Citrus Sinensis ID: 003008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------86
Protein Sequence
MLAASTIPSIHYNTKLPYIHHLVLNTTSEPRTRKPAAAVSSFRYNYNNHHHGLFFFKPSTYAVGTVRARAGNGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNLPV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHcccccccHHHHHcccccccccHHHccccccccccHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHcHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEcccccEEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHccEEEEccccccccEEEEEEccccccccccccccccccccHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHcccHHHHcccccccccccccccHHHHcccHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHEEEccccccHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHccHccccccHHHEccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHcccHHcHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mlaastipsihyntklpyiHHLVlnttseprtrkpaaaVSSFRYnynnhhhglfffkpstyavgtvraragngdgasdaipqqsssvdikeisgssstfgdSYVALFVQMLgldydpldREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEeitglltrpsltsevkEQSMCTLwnlsvdkkhrlkiantDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEeglvpvpmvgadayksfrpelhswpslpdgteiertsqgpskfganELLLglnvsdknanideAKMNAMVGRSRQHFLVRIGaiesedgrkpqsefpidrqltllpwIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRildpskemkskfydipvngsekgldaaesldpsieLTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKaledtdsdiegrqpekyaLDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLsclsgpdqdfenpinMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEgvvdstravaseggifPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNLPV
Flexible Loop (DISEMBL)
mlaastipsihyntklpyIHHLVLnttseprtrKPAAAVSSFRYNYNNHHHGLFFFKPSTYAVGTVRARAgngdgasdaipqqsssvdIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEeitglltrpsltsevKEQSMCTLWNlsvdkkhrlkiaNTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAiesedgrkpqsefPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEaegvvhplvnTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVsetttsygkvldSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKAledtdsdieGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLsqrpqwtralrllrnlpv
Low Complexity Region (SEG)
MLAASTIPSIHYNTKLPYIHHLVLNTTSEPRTRKPAAAVSSFRYNYNNHHHGLFFFKPSTYAVGTVRARAGNGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNllrsessaaceaaagllrsISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEderaiaraaesiadisiNEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNLPV
Disordered region (IsUnstruct)
******IPSIHYNTKLPYIHHLVLNTT*********AAVSSFRYNYNNHHHGLFFFKPSTYAVGTVR*******************************FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPEL*************************ELLLGLNV**************MVGRSRQHFLVRIGAI***********FPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD********FYDI******************IELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQ*****************YALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLL*****
Disordered Region (DISOPRED)
*******PSIHYNTKLPYIHHLV**********************************************************************************LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSE***************TGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVL******TRALRLLRNLPV
Disordered Region (DISEMBL)
MLAASTIPSIHYNTKLPYIHHLVLNTTSEPRTRKPAAAVSSFRYNYNNHHHGLFFFKPSTYAVGTVRARAGNGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNLPV
Disordered Region (DISPRO)
****STIPSIHYNTKLPYIHHLVLNTTSEPRTRKPAAAVSSFRYNYNNHHHGLFFFKPSTYAVGTVRARAGNGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNLP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAASTIPSIHYNTKLPYIHHLVLNTTSEPRTRKPAAAVSSFRYNYNNHHHGLFFFKPSTYAVGTVRARAGNGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNLPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	858	2.2.26 [Sep-21-2011]
Q5VRH9	611	U-box domain-containing p	no	no	0.202	0.284	0.295	6e-09
Q9SNC6	660	U-box domain-containing p	no	no	0.174	0.227	0.301	3e-08
O22193	826	U-box domain-containing p	no	no	0.196	0.204	0.308	1e-07
O22161	930	Protein ARABIDILLO 1 OS=A	no	no	0.196	0.181	0.298	3e-07
Q8GUG9	612	U-box domain-containing p	no	no	0.255	0.357	0.273	8e-07
Q8VZ40	632	U-box domain-containing p	no	no	0.228	0.310	0.278	5e-06
Q9M224	928	Protein ARABIDILLO 2 OS=A	no	no	0.181	0.168	0.295	1e-05
Q681N2	660	U-box domain-containing p	no	no	0.155	0.201	0.304	2e-05
Q9ZV31	654	U-box domain-containing p	no	no	0.104	0.137	0.340	4e-05
Q6C5Y8	573	Vacuolar protein 8 OS=Yar	yes	no	0.156	0.233	0.286	4e-05

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 9/183 (4%)

Query: 136 KCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YRDLVAECGAIEEITG 194
           K  DY    +G ++L +N LRS +     AAAG +R ++  NV  R  +AE GAI  +  
Sbjct: 316 KSSDY--DHAGLVSL-MNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVN 372

Query: 195 LLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVL 254
           LL+  S     +E ++  L NLS+ + ++  I ++  +P +++ L+  +M+ +E A   L
Sbjct: 373 LLS--SSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATL 430

Query: 255 ANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEE 314
            +L++   N   +  AG IP L  LL    +GS   +K+A  A+  L      ++  ++ 
Sbjct: 431 FSLSVVDENKVTIGAAGAIPPLINLL---CDGSPRGKKDAATAIFNLCIYQGNKVRAVKA 487

Query: 315 GLV 317
           G+V
Sbjct: 488 GIV 490

Possesses E3 ubiquitin-protein ligase in vitro.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 6/156 (3%)

Query: 165 AAAGLLRSISSINV-YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR 223
           +AAG +R ++  N   R  +AE GAI  + GLL+ P   S ++E S+  L NLS+ + ++
Sbjct: 371 SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPD--SRIQEHSVTALLNLSICENNK 428

Query: 224 LKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN 283
             I +   +P +++ L+  +M+ +E A   L +L++   N   +   G IP L +LL   
Sbjct: 429 GAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLN-- 486

Query: 284 VEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPV 319
            EG++  +K+A  AL  L      +   I  G++P 
Sbjct: 487 -EGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPT 521

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 145 SGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSE 204
           SG I L V LL S  SA  E A   L ++S  +  +  +A+ GAIE +  +L   S  SE
Sbjct: 582 SGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGS--SE 639

Query: 205 VKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH 264
            KE S  TL++LSV +++++KI  +  +  L+  L +   + K+ A   L NL++ + N 
Sbjct: 640 AKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENK 699

Query: 265 NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPV 319
            ++V++G +  L  L+    + +  +  +A   L  LA     R  I +EG +P+
Sbjct: 700 AMIVQSGAVRYLIDLM----DPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPL 750

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 141 IMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPS 200
           + Q +G +   V L +S      + AAG L ++S  +  R+ ++  G +E +  L    S
Sbjct: 605 VGQEAGALEALVQLTKSPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALAQSCS 664

Query: 201 LTSE-VKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259
             S  ++E++   LW LSV + + + I     +P LI     E   V E A G L NLA 
Sbjct: 665 NASTGLQERAAGALWGLSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALWNLAF 724

Query: 260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIEL--AKDDYYRILI 311
           +  N   +VE G +P L  L  ++V  SK+ R  A  AL  +   + D Y ++I
Sbjct: 725 NPGNALRIVEEGGVPALVHLCSSSV--SKMARFMAALALAYMFDGRMDEYALMI 776

Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 92  ISGSSSTFGD-SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCID--YIMQFSGCI 148
           I+G +   GD S +   VQ L       DR  AV  +   S   K+  D   ++  +G I
Sbjct: 320 INGRTKNSGDMSVIRALVQRLS-SRSTEDRRNAVSEIRSLS---KRSTDNRILIAEAGAI 375

Query: 149 NLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQ 208
            + VNLL SE  A  E A   + ++S     ++L+   GA+  I  +L   + T E +E 
Sbjct: 376 PVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLR--AGTMEAREN 433

Query: 209 SMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILV 268
           +  TL++LS+  ++++ I  +  +P L+  LE+   + K+ A   L NL +   N    V
Sbjct: 434 AAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAV 493

Query: 269 EAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVP 318
            AG++  L  +L  +     V   EA   L  LA +   +  I++   +P
Sbjct: 494 RAGIVTALVKMLSDSTRHRMV--DEALTILSVLANNQDAKSAIVKANTLP 541

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 80  IPQQSSSVDIKEISGSSSTFGD-SYVALFVQMLGLDYDPLDREQAVEA--LWKYSLGGKK 136
           +PQ   S    +I GSSS+  D ++V   ++ L        R  A E   L K ++  + 
Sbjct: 322 LPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRV 381

Query: 137 CIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLL 196
           CI      +G I L V LL S      E +   L ++S     +  + + GAI +I  +L
Sbjct: 382 CIAE----AGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVL 437

Query: 197 TRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256
              S+  E +E +  TL++LSV  ++++ I     +  LI  LE+   + K+ A   + N
Sbjct: 438 KNGSM--EARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFN 495

Query: 257 LALSKSNHNILVEAGVIPKLAMLLK 281
           L + + N +  V+ G++  L  LLK
Sbjct: 496 LCIYQGNKSRAVKGGIVDPLTRLLK 520

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9M224|ADLO2_ARATH Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 141 IMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPS 200
           + Q +G +   V L +S      + AAG L +++  +  R+ +A  G +E +  L    S
Sbjct: 596 VGQEAGALEALVQLTQSPHEGVKQEAAGALWNLAFDDKNRESIAAFGGVEALVALAKSSS 655

Query: 201 LTSE-VKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259
             S  ++E+    LW LSV + + + I +   +P LI  +  E   V E A G L NL+ 
Sbjct: 656 NASTGLQERVAGALWGLSVSEANSIAIGHEGGIPPLIALVRSEAEDVHETAAGALWNLSF 715

Query: 260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNAL 298
           +  N   +VE G +  L  L  ++V  SK+ R  A  AL
Sbjct: 716 NPGNALRIVEEGGVVALVQLCSSSV--SKMARFMAALAL 752

Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).

Arabidopsis thaliana (taxid: 3702)

>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSL 239
           R L+A  GAI  +  LL+ P   S ++E ++ TL NLS+D+ ++  I+N   +P +I+ L
Sbjct: 414 RVLIANAGAIPLLVQLLSYPD--SGIQENAVTTLLNLSIDEVNKKLISNEGAIPNIIEIL 471

Query: 240 EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI 299
           E+ N + +E +   L +L++   N   +  +  IP L  LL+    G+   +K+A  AL 
Sbjct: 472 ENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQ---HGTLRGKKDALTALF 528

Query: 300 ELAKDDYYRILIIEEGLV 317
            L+ +   +   I+ G+V
Sbjct: 529 NLSLNSANKGRAIDAGIV 546

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTR-AVASEGGIFPLVKLIEEGSNRA 805
           A+P ++  ++  S EARE A   L    S  V+D  +  + + G I PLV L+ EGS R 
Sbjct: 441 AVPGIVHVLQKGSMEARENAAATL---FSLSVIDENKVTIGAAGAIPPLVTLLSEGSQRG 497

Query: 806 VEAGLAILYNLSMDSENHSAIIAAGAVPALRRIV 839
            +     L+NL +   N    + AG VP L R++
Sbjct: 498 KKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLL 531

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6C5Y8|VAC8_YARLI Vacuolar protein 8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=VAC8 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVK 206
           C+   + LL++       AA+  L +++  N  + L+ E G  E +   +  P++  EV+
Sbjct: 109 CLEPVLLLLQNTDPDIQRAASAALGNLAVNNENKVLIVEMGGFEPLIRQMMSPNV--EVQ 166

Query: 207 EQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNI 266
             ++  + NL+  + ++ KIA +  L  L K  + ++M+V+  A G L N+  S  N   
Sbjct: 167 CNAVGCITNLATHEANKSKIARSGALLPLTKLAKSKDMRVQRNATGALLNMTHSDQNRQE 226

Query: 267 LVEAGVIPKLAMLLKA 282
           LV AG IP L  LL +
Sbjct: 227 LVNAGAIPILVSLLSS 242

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	858
297737669	816	unnamed protein product [Vitis vinifera]	0.909	0.955	0.716	0.0
225424303	869	PREDICTED: uncharacterized protein LOC10	0.961	0.949	0.642	0.0
255573736	765	conserved hypothetical protein [Ricinus	0.869	0.975	0.674	0.0
224099507	804	predicted protein [Populus trichocarpa]	0.900	0.961	0.682	0.0
449527795	821	PREDICTED: uncharacterized protein LOC10	0.917	0.958	0.633	0.0
449464810	821	PREDICTED: uncharacterized protein LOC10	0.917	0.958	0.632	0.0
356529058	825	PREDICTED: uncharacterized protein LOC10	0.921	0.958	0.629	0.0
356521127	805	PREDICTED: uncharacterized protein LOC10	0.893	0.952	0.609	0.0
357438777	826	U-box domain-containing protein [Medicag	0.884	0.918	0.621	0.0
30688260	834	armadillo/beta-catenin-like repeat-conta	0.877	0.902	0.617	0.0

>gi|297737669|emb|CBI26870.3| unnamed protein product [Vitis vinifera]

 Score = 1107 bits (2862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/790 (71%), Positives = 675/790 (85%), Gaps = 10/790 (1%)

Query: 70  AGNGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWK 129
           A +GD +S  + Q     D   I+ SS + GD YVALFV+MLGLD DPLDREQAV ALWK
Sbjct: 34  ALHGDASSHLLLQ-----DRNTINSSSPSLGDGYVALFVRMLGLDNDPLDREQAVVALWK 88

Query: 130 YSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAI 189
           YSLGGK+ ID IMQF GC+NLTVNLL+S+SS+ CEAAAGLLR I+SIN++R+ VAE GAI
Sbjct: 89  YSLGGKQYIDAIMQFRGCLNLTVNLLKSDSSSTCEAAAGLLREIASINLHRESVAESGAI 148

Query: 190 EEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEA 249
           EEITGLL   SLTSEVKEQS+CTLWNLSVD+K R+KIANTD+LPL+I+SLEDE++KVKEA
Sbjct: 149 EEITGLLRHSSLTSEVKEQSICTLWNLSVDEKLRMKIANTDLLPLVIRSLEDEDIKVKEA 208

Query: 250 AGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRI 309
           AGGVLANLALS S H+I+VEAGVIPKLA LL+ +VEGSKVI+KEARNAL+ELAKD+Y RI
Sbjct: 209 AGGVLANLALSTSLHSIMVEAGVIPKLAKLLRIDVEGSKVIKKEARNALLELAKDEYNRI 268

Query: 310 LIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSD 369
           LI+EEGLV VPM+GA AYK+  P L+SWPSLPDGT+IE++S+ PSK+GA+ELLLGLN+ D
Sbjct: 269 LIVEEGLVIVPMIGAAAYKALTPGLYSWPSLPDGTKIEQSSKAPSKYGASELLLGLNIDD 328

Query: 370 KNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVL 429
           KNA ID++K+NA+VGR++Q FL RIGAIE ED RK QS     ++ TLLPW+DGVARLVL
Sbjct: 329 KNAEIDKSKINAVVGRTQQQFLARIGAIEVEDERKSQS-VSTSQRFTLLPWMDGVARLVL 387

Query: 430 ILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALER 489
           ILGLEDE AI+RAAESIAD SINEHMR+ FKEAGA+K+LV+LLDH++D+VR A T ALER
Sbjct: 388 ILGLEDELAISRAAESIADASINEHMRISFKEAGAMKHLVRLLDHNNDSVRFAVTCALER 447

Query: 490 LSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPV 549
           LSVS  +CQ++EAEGV++PL+N LK+   SE+LMEKTLDIL RILDP KEMKSKFY+ PV
Sbjct: 448 LSVSNSICQLIEAEGVIYPLLNALKHSGTSETLMEKTLDILARILDPGKEMKSKFYEGPV 507

Query: 550 NGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGK-VLDSVFIGRMIGIMKTSYPDLQ 608
           NGS+KGL+A    D +I+  GN+ E AVS++TT  GK V+DS  I  ++ I+KT  P+LQ
Sbjct: 508 NGSKKGLNAMGRPDATIQFVGNMDETAVSKSTT--GKDVMDSAIIACLVEILKTPSPNLQ 565

Query: 609 RKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEA 668
           RKA+SILEF+TII+P +DTI+S DIESGL+A+FQQK L+DT+SD+  ++PE +AL +EEA
Sbjct: 566 RKASSILEFLTIIEPHLDTILSVDIESGLEAVFQQKILDDTESDMGDQRPELHALKVEEA 625

Query: 669 SLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLS 728
            LAISA +RLLTKLLD  QF QTIN+  F KLLRK L+SN+PLH KDWVAACLVKLS LS
Sbjct: 626 GLAISAASRLLTKLLDFVQFRQTINAARFTKLLRKTLRSNIPLHNKDWVAACLVKLSSLS 685

Query: 729 GPDQDFENPINMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVAS 787
           GP+QDF++P+N+EVTLYE +PRL+EQIK SFS EA+EAAVIELNRIISEGVVDSTRAVA+
Sbjct: 686 GPNQDFDDPVNLEVTLYETVPRLVEQIKTSFSPEAQEAAVIELNRIISEGVVDSTRAVAA 745

Query: 788 EGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWT 847
           EGGIFPLVK+IEEGS RAVEA LAILYN+SMDSENHSAIIAAGA+PALRRIVLSQ PQW 
Sbjct: 746 EGGIFPLVKVIEEGSERAVEAALAILYNISMDSENHSAIIAAGAIPALRRIVLSQGPQWM 805

Query: 848 RALRLLRNLP 857
           RAL LLR LP
Sbjct: 806 RALHLLRTLP 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424303|ref|XP_002280941.1| PREDICTED: uncharacterized protein LOC100255981 [Vitis vinifera]

 Score = 1066 bits (2756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/896 (64%), Positives = 691/896 (77%), Gaps = 71/896 (7%)

Query: 4   ASTIPSIHYNTKLPYIH-----HLVLNTTSEPRTRKPAAAVSSFRYNYNNHHHGLFFFKP 58
           ASTIP  H+  K+   H     HL +      RTR+   A  SF   + +H      F  
Sbjct: 2   ASTIPP-HFKFKVWNNHPHPNTHLDVIAVRPTRTRRSPTA--SFCSTHQHHLLHHHIFNH 58

Query: 59  STYAVGTVRAR-AGNGDGASDA-------------------IPQQSSSV----------- 87
            + ++ TV  R +G+G G  DA                   +P + S +           
Sbjct: 59  KSSSIRTVLTRVSGDGGGIVDAASQQSASAVSSELFFLLMFMPLRPSGLVIPRFPGFSGW 118

Query: 88  -----DIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIM 142
                D   I+ SS + GD YVALFV+MLGLD DPLDREQAV ALWKYSLGGK+ ID IM
Sbjct: 119 EFGIWDRNTINSSSPSLGDGYVALFVRMLGLDNDPLDREQAVVALWKYSLGGKQYIDAIM 178

Query: 143 QFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLT 202
           QF GC+NLTVNLL+S+SS+ CEAAAGLLR I+SIN++R+ VAE GAIEEITGLL   SLT
Sbjct: 179 QFRGCLNLTVNLLKSDSSSTCEAAAGLLREIASINLHRESVAESGAIEEITGLLRHSSLT 238

Query: 203 SEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS 262
           SEVKEQS+CTLWNLSVD+K R+KIANTD+LPL+I+SLEDE++KVKEAAGGVLANLALS S
Sbjct: 239 SEVKEQSICTLWNLSVDEKLRMKIANTDLLPLVIRSLEDEDIKVKEAAGGVLANLALSTS 298

Query: 263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMV 322
            H+I+VEAGVIPKLA LL+ +VEGSKVI+KEARNAL+ELAKD+Y RILI+EEGLV VPM+
Sbjct: 299 LHSIMVEAGVIPKLAKLLRIDVEGSKVIKKEARNALLELAKDEYNRILIVEEGLVIVPMI 358

Query: 323 GADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAM 382
           GA AYK+  P L+SWPSLPDGT+IE++S+ PSK+GA+ELLLGLN+ DKNA ID++K+NA+
Sbjct: 359 GAAAYKALTPGLYSWPSLPDGTKIEQSSKAPSKYGASELLLGLNIDDKNAEIDKSKINAV 418

Query: 383 VGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARA 442
           VGR++Q FL RIGAIE ED RK QS     ++ TLLPW+DGVARLVLILGLEDE AI+RA
Sbjct: 419 VGRTQQQFLARIGAIEVEDERKSQS-VSTSQRFTLLPWMDGVARLVLILGLEDELAISRA 477

Query: 443 AESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502
           AESIAD SINEHMR+ FKEAGA+K+LV+LLDH++D+VR A T ALERLSVS  +CQ++EA
Sbjct: 478 AESIADASINEHMRISFKEAGAMKHLVRLLDHNNDSVRFAVTCALERLSVSNSICQLIEA 537

Query: 503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESL 562
           EGV++PL+N LK+   SE+LMEKTLDIL RILDP KEMKSKFY+ PVNGS+KGL+A    
Sbjct: 538 EGVIYPLLNALKHSGTSETLMEKTLDILARILDPGKEMKSKFYEGPVNGSKKGLNAMGRK 597

Query: 563 DPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID 622
           D                       V+DS  I  ++ I+KT  P+LQRKA+SILEF+TII+
Sbjct: 598 D-----------------------VMDSAIIACLVEILKTPSPNLQRKASSILEFLTIIE 634

Query: 623 PSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKL 682
           P +DTI+S DIESGL+A+FQQK L+  +SD+  ++PE +AL +EEA LAISA +RLLTKL
Sbjct: 635 PHLDTILSVDIESGLEAVFQQKILD--ESDMGDQRPELHALKVEEAGLAISAASRLLTKL 692

Query: 683 LDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEV 742
           LD  QF QTIN+  F KLLRK L+SN+PLH KDWVAACLVKLS LSGP+QDF++P+N+EV
Sbjct: 693 LDFVQFRQTINAARFTKLLRKTLRSNIPLHNKDWVAACLVKLSSLSGPNQDFDDPVNLEV 752

Query: 743 TLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEG 801
           TLYE +PRL+EQIK SFS EA+EAAVIELNRIISEGVVDSTRAVA+EGGIFPLVK+IEEG
Sbjct: 753 TLYETVPRLVEQIKTSFSPEAQEAAVIELNRIISEGVVDSTRAVAAEGGIFPLVKVIEEG 812

Query: 802 SNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNLP 857
           S RAVEA LAILYN+SMDSENHSAIIAAGA+PALRRIVLSQ PQW RAL LLR LP
Sbjct: 813 SERAVEAALAILYNISMDSENHSAIIAAGAIPALRRIVLSQGPQWMRALHLLRTLP 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573736|ref|XP_002527789.1| conserved hypothetical protein [Ricinus communis] gi|223532824|gb|EEF34599.1| conserved hypothetical protein [Ricinus communis]

 Score = 1045 bits (2703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/764 (67%), Positives = 621/764 (81%), Gaps = 18/764 (2%)

Query: 110 MLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGL 169
           MLGLD DPLDREQAVEALWKYSLGGKKC+D IMQF GC+NL +NLL+S+SS+ CEAAAGL
Sbjct: 1   MLGLDNDPLDREQAVEALWKYSLGGKKCVDNIMQFQGCVNLIINLLKSDSSSTCEAAAGL 60

Query: 170 LRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANT 229
           LRSI+S+N+YRD+VAE GA+EEITGLL +PSLTSEVKEQS+C LWNLSVD+K R+KI N+
Sbjct: 61  LRSIASVNLYRDVVAESGAVEEITGLLCQPSLTSEVKEQSICALWNLSVDEKIRVKITNS 120

Query: 230 DILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGS-K 288
           DILP+LIK+LEDE+++VKEAAGGVLANLAL+ SNHN +VEAG+IPKLA+LLKA++E   K
Sbjct: 121 DILPVLIKALEDEDIRVKEAAGGVLANLALTVSNHNTMVEAGLIPKLAVLLKADIEDEYK 180

Query: 289 VIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIER 348
           VIRKEARNAL+ELAK++YYRIL+I+EGLVPVP++GA AYKS+ P LH+WP+LPDG +IER
Sbjct: 181 VIRKEARNALVELAKNEYYRILVIDEGLVPVPLIGATAYKSYTPALHAWPTLPDGMKIER 240

Query: 349 TSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSE 408
           TS+GPS+FGA++LLLGLN+ DKN NI++AKM A++GRS+Q FL R G+IE ED +  Q+E
Sbjct: 241 TSKGPSRFGASDLLLGLNIDDKNTNIEDAKMKAIIGRSKQQFLARSGSIEVEDAKSSQTE 300

Query: 409 FPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYL 468
           F   RQ T+LPW+DGVARLVLIL LEDE A++RAA SIAD SINEHMR  FKEAGAIK+L
Sbjct: 301 FSASRQFTILPWVDGVARLVLILELEDESALSRAANSIADASINEHMRNSFKEAGAIKHL 360

Query: 469 VKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLD 528
           V+LL H +DAVRLA   ALERLS S  VCQI+EAEGV+ PL++ LKN +  E +MEK L+
Sbjct: 361 VRLLYHKNDAVRLAVIGALERLSASNTVCQIIEAEGVISPLIDLLKNSETLEIMMEKALN 420

Query: 529 ILGRILDPSKEMKSK---------------FYDIPVNGSEKGLDAAESLDPSIELTGNVI 573
           +L RILDPSKEMKSK               FY+ PVNGS++GLD    LD S  LT  + 
Sbjct: 421 VLNRILDPSKEMKSKFVFRYRLTRYDDVFQFYNGPVNGSKRGLDLTRDLDSSSGLTTKID 480

Query: 574 EAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADI 633
           E ++S+  T    +LDS  I R++ I+K S  +LQRK A+++EF+ + D +MD IIS+DI
Sbjct: 481 EMSMSKINTRQ-DLLDSSVIARLVEILKHSSSNLQRKVATVIEFLALNDANMDLIISSDI 539

Query: 634 ESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTIN 693
           E GL A+FQQ  + + DSDIE +QPE YAL +EE  LAISA +RLLT LLDS QF +  N
Sbjct: 540 EYGLAAVFQQTVMSELDSDIENQQPELYALQVEETGLAISAASRLLTVLLDSDQFSRAAN 599

Query: 694 STHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIE 753
           + HF KLLRKILKSN+PLHYK+WVAACLVKLS   GP   FE+PIN EVTLYE IPRLIE
Sbjct: 600 AHHFTKLLRKILKSNIPLHYKNWVAACLVKLSSQYGPSLQFEDPINTEVTLYETIPRLIE 659

Query: 754 QIKS-FSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAI 812
           QIKS F  E +EAA +ELNRIIS+G VD+  AVAS GGIFPLVKLIE GS R VEA ++I
Sbjct: 660 QIKSTFFPEVQEAAAVELNRIISDGGVDAIPAVASSGGIFPLVKLIEGGSERTVEAAMSI 719

Query: 813 LYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNL 856
           LYN+SMDSENHSAIIAAGAVPALR+IVLSQ+PQW +AL LLR L
Sbjct: 720 LYNMSMDSENHSAIIAAGAVPALRKIVLSQKPQWNQALHLLRTL 763

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099507|ref|XP_002311511.1| predicted protein [Populus trichocarpa] gi|222851331|gb|EEE88878.1| predicted protein [Populus trichocarpa]

 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/778 (68%), Positives = 639/778 (82%), Gaps = 5/778 (0%)

Query: 84  SSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQ 143
           S + +I++   SSS+F D+YVALFV+MLGLD DPLDREQA+ ALW+YSLGGKKCID IMQ
Sbjct: 27  SPAKNIEDSKCSSSSFSDNYVALFVRMLGLDNDPLDREQAIVALWQYSLGGKKCIDNIMQ 86

Query: 144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTS 203
           F GCINL VNLL+SE S+ACEA+AGLLRSISS+NVYRD+VAE GAIEEIT LL++PSLT 
Sbjct: 87  FQGCINLIVNLLQSELSSACEASAGLLRSISSVNVYRDVVAESGAIEEITRLLSQPSLTP 146

Query: 204 EVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN 263
           +V EQS+C LWNLSVD+K R+KIAN D+LPLLIKSL+DE+++VKEAAGGVLANL L+ SN
Sbjct: 147 QVMEQSICILWNLSVDEKLRVKIANPDVLPLLIKSLKDEDIRVKEAAGGVLANLTLTHSN 206

Query: 264 HNILVEAGVIPKLAMLLKANV-EGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMV 322
           HNI+VEAGVIPKLA  LK+ V E SKVIRKEARNAL+EL K+ YYRIL++EEGLV VP++
Sbjct: 207 HNIMVEAGVIPKLANFLKSAVDEESKVIRKEARNALVELCKNQYYRILVMEEGLVLVPLI 266

Query: 323 GADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAM 382
           GA AY+SF P LHSWPSLPDG++IE T +GPS+FGA+ELLLGLN+ DKNAN++EAKM A+
Sbjct: 267 GAAAYRSFIPALHSWPSLPDGSKIEHTFKGPSRFGASELLLGLNIDDKNANLEEAKMKAI 326

Query: 383 VGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARA 442
           +GRS+Q FL R GAIE ED +  QS     RQ T+LPWIDGVARLVLIL LEDE AI RA
Sbjct: 327 IGRSKQQFLARTGAIEVEDTKLSQSGSSKTRQFTVLPWIDGVARLVLILELEDESAICRA 386

Query: 443 AESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502
           AESIAD SINEH+R  FKEAGA+K L++LLDH++DA+RLA   ALE+LS+S  VC+ +EA
Sbjct: 387 AESIADASINEHLRNSFKEAGAVKNLIQLLDHNNDAIRLAAVGALEKLSISNAVCETIEA 446

Query: 503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESL 562
           EGV+ PL+N LKN ++SES+MEK L++L RILDP++EMK KFYD PVNG +K LDAA   
Sbjct: 447 EGVMAPLINILKNSEMSESMMEKALNLLSRILDPNREMKLKFYDGPVNGFKKELDAARGD 506

Query: 563 DPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID 622
           D S  L+  V E   S+T T    VLD   + R++ ++K   P+LQRKAAS+LEF+ I D
Sbjct: 507 DASTGLSRKVDEMLKSKTNTRR-DVLDLDVVARLVDMLKHPSPELQRKAASVLEFVAISD 565

Query: 623 PSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKL 682
            SMDT+ISA+IESGL AIFQQ  L + +SD + +Q E +A+ +EE  LAIS+ +RLLTKL
Sbjct: 566 SSMDTVISANIESGLLAIFQQIELNELESDDDSQQTEIHAVQVEEVGLAISSASRLLTKL 625

Query: 683 LDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQ--DFENPINM 740
           LD + F   IN + F KLLRKILKSN+PL YKDW AACLVKL  L GP    +FENPINM
Sbjct: 626 LDLELFRHNINPSLFTKLLRKILKSNIPLQYKDWTAACLVKLGSLYGPTPILEFENPINM 685

Query: 741 EVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIE 799
           EVTLYE IPRLI+Q++ SFS EA+E AV+ELNRIISEG+VD+TRAVAS+GGIFPLVKLIE
Sbjct: 686 EVTLYEKIPRLIDQMRSSFSLEAQETAVLELNRIISEGMVDATRAVASDGGIFPLVKLIE 745

Query: 800 EGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNLP 857
            GS RAVEA + ILYNLSMD+ENH+AI+AAGAVPALRRI+LS+R QW RALRLLRNLP
Sbjct: 746 GGSERAVEAAICILYNLSMDNENHAAILAAGAVPALRRIILSERSQWKRALRLLRNLP 803

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527795|ref|XP_004170895.1| PREDICTED: uncharacterized protein LOC101224597 [Cucumis sativus]

 Score = 1016 bits (2627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/829 (63%), Positives = 643/829 (77%), Gaps = 42/829 (5%)

Query: 30  PRTRKPAAAVSSFRYNYNNHHHGLFFFKPSTYAVGTVRARAGNGDGASDAIPQQSSSVDI 89
           P+   P+  +   R++ ++    L F + S+             DG  D+   QS++ DI
Sbjct: 33  PKPTHPSLFLCRLRFSSDSLSKRLVFRRVSS-------------DGGGDSSQHQSATPDI 79

Query: 90  KEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCIN 149
           K++   SS+ G SYVALFV+MLGLD DPLDREQA+ ALWKYSLGGKK ID IMQF GCIN
Sbjct: 80  KDVQNDSSSVGHSYVALFVRMLGLDNDPLDREQAIIALWKYSLGGKKHIDAIMQFPGCIN 139

Query: 150 LTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQS 209
           L VNLLRSES   CEAAAGLLRSIS +N+YR+ VAE GAIEEITGLL +PSLT EVKEQS
Sbjct: 140 LAVNLLRSESIPTCEAAAGLLRSISQVNLYRESVAESGAIEEITGLLCQPSLTPEVKEQS 199

Query: 210 MCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVE 269
           +C LWNLSVD+K R+KIANTDILPLL K+L+DENMKVKEAAGGVLANLALS  NH ++VE
Sbjct: 200 ICVLWNLSVDEKLRIKIANTDILPLLSKNLDDENMKVKEAAGGVLANLALSPCNHGVIVE 259

Query: 270 AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKS 329
           +G+I KLA  LKA  + SK++RKEARNAL+EL+KD YYRIL+IEEGLVPVP++GA AYKS
Sbjct: 260 SGLITKLAYQLKAEADSSKIMRKEARNALLELSKDGYYRILVIEEGLVPVPILGAAAYKS 319

Query: 330 FRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQH 389
           FRP LHSWP LPDG EIE++++ PS++GA++LLLGLNV DKNANI+E K+NA+VGR++Q 
Sbjct: 320 FRPGLHSWPRLPDGIEIEQSTK-PSRYGASQLLLGLNV-DKNANIEERKINAIVGRTQQQ 377

Query: 390 FLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADI 449
           FL RIGAIE ED +  QSE      LTLLPWIDGVARLVLIL LED+ AI RAA SIAD 
Sbjct: 378 FLARIGAIEIEDLKDSQSESSSRNHLTLLPWIDGVARLVLILELEDDNAITRAAVSIADA 437

Query: 450 SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPL 509
           SINEHMR+ FKEAGAIKYLVK LD+++D+V+ A   ALERLS+S  VCQ +E EG + PL
Sbjct: 438 SINEHMRISFKEAGAIKYLVKFLDYTNDSVKWAAVQALERLSISNVVCQAIENEGALGPL 497

Query: 510 VNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELT 569
           ++ LK   I E++MEKTL+IL RILDPSKEMKSKFY  PVNGS+ G  +  + + SI   
Sbjct: 498 LSILKFSGIPENVMEKTLNILSRILDPSKEMKSKFYSGPVNGSQGGQHSEGNFEASIR-- 555

Query: 570 GNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTII 629
                            VLD+  + R + I+ TS P+L++KAASILEF++I+DPSM+ I 
Sbjct: 556 ---------------KDVLDAGVVSRFVEILNTSSPNLKQKAASILEFVSIMDPSMELID 600

Query: 630 SADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFC 689
             +I+  L+ ++       TDSD E  QPE+YAL++EEA LAISA +RLLTKLLDS++F 
Sbjct: 601 PVEID--LNFVY-------TDSDGEVWQPERYALEVEEAGLAISAASRLLTKLLDSEKFS 651

Query: 690 QTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIP 749
             INSTHF KLLR++LKS++P+++KDW+AACL+KLS +   + DF +PINMEVTLYE IP
Sbjct: 652 NKINSTHFTKLLRRVLKSDIPINHKDWIAACLIKLSSVLTLNTDFGDPINMEVTLYETIP 711

Query: 750 RLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEA 808
           RLIEQ++ SFS E +E+AV+ELNRI+SEG+V++TRAVAS+GGIFPLVKLI+EGS RAVEA
Sbjct: 712 RLIEQMQSSFSLEVQESAVVELNRIVSEGIVNATRAVASKGGIFPLVKLIDEGSERAVEA 771

Query: 809 GLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNLP 857
            LAILYNLSMDSENH AI+AAGAVPALRRI LSQR QW +AL LLR LP
Sbjct: 772 ALAILYNLSMDSENHPAIVAAGAVPALRRIALSQRVQWQQALYLLRTLP 820

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464810|ref|XP_004150122.1| PREDICTED: uncharacterized protein LOC101220075 [Cucumis sativus]

 Score = 1013 bits (2619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/829 (63%), Positives = 642/829 (77%), Gaps = 42/829 (5%)

Query: 30  PRTRKPAAAVSSFRYNYNNHHHGLFFFKPSTYAVGTVRARAGNGDGASDAIPQQSSSVDI 89
           P+   P+  +   R++ ++    L F + S+             DG  D+   QS++ DI
Sbjct: 33  PKPTHPSLFLCRLRFSSDSLSKRLVFRRVSS-------------DGGGDSSQHQSATPDI 79

Query: 90  KEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCIN 149
           K++   SS+ G SYVALFV+MLGL  DPLDREQA+ ALWKYSLGGKK ID IMQF GCIN
Sbjct: 80  KDVQNDSSSVGHSYVALFVRMLGLANDPLDREQAIIALWKYSLGGKKHIDAIMQFPGCIN 139

Query: 150 LTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQS 209
           L VNLLRSES   CEAAAGLLRSIS +N+YR+ VAE GAIEEITGLL +PSLT EVKEQS
Sbjct: 140 LAVNLLRSESIPTCEAAAGLLRSISQVNLYRESVAESGAIEEITGLLCQPSLTPEVKEQS 199

Query: 210 MCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVE 269
           +C LWNLSVD+K R+KIANTDILPLL K+L+DENMKVKEAAGGVLANLALS  NH ++VE
Sbjct: 200 ICVLWNLSVDEKLRIKIANTDILPLLSKNLDDENMKVKEAAGGVLANLALSPCNHGVIVE 259

Query: 270 AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKS 329
           +G+I KLA  LKA  + SK++RKEARNAL+EL+KD YYRIL+IEEGLVPVP++GA AYKS
Sbjct: 260 SGLITKLAYQLKAEADSSKIMRKEARNALLELSKDGYYRILVIEEGLVPVPILGAAAYKS 319

Query: 330 FRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQH 389
           FRP LHSWP LPDG EIE++++ PS++GA++LLLGLNV DKNANI+E K+NA+VGR++Q 
Sbjct: 320 FRPGLHSWPRLPDGIEIEQSTK-PSRYGASQLLLGLNV-DKNANIEERKINAIVGRTQQQ 377

Query: 390 FLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADI 449
           FL RIGAIE ED +  QSE      LTLLPWIDGVARLVLIL LED+ AI RAA SIAD 
Sbjct: 378 FLARIGAIEIEDLKDSQSESSSRNHLTLLPWIDGVARLVLILELEDDNAITRAAVSIADA 437

Query: 450 SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPL 509
           SINEHMR+ FKEAGAIKYLVK LD+++D+V+ A   ALERLS+S  VCQ +E EG + PL
Sbjct: 438 SINEHMRISFKEAGAIKYLVKFLDYTNDSVKWAAVQALERLSISNVVCQAIENEGALGPL 497

Query: 510 VNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELT 569
           ++ LK   I E++MEKTL+IL RILDPSKEMKSKFY  PVNGS+ G  +  + + SI   
Sbjct: 498 LSILKFSGIPENVMEKTLNILSRILDPSKEMKSKFYSGPVNGSQGGQHSEGNFEASIR-- 555

Query: 570 GNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTII 629
                            VLD+  + R + I+ TS P+L++KAASILEF++I+DPSM+ I 
Sbjct: 556 ---------------KDVLDAGVVSRFVEILNTSSPNLKQKAASILEFVSIMDPSMELID 600

Query: 630 SADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFC 689
             +I+  L+ ++       TDSD E  QPE+YAL++EEA LAISA +RLLTKLLDS++F 
Sbjct: 601 PVEID--LNFVY-------TDSDGEVWQPERYALEVEEAGLAISAASRLLTKLLDSEKFS 651

Query: 690 QTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIP 749
             INSTHF KLLR++LKS++P+++KDW+AACL+KLS +   + DF +PINMEVTLYE IP
Sbjct: 652 NKINSTHFTKLLRRVLKSDIPINHKDWIAACLIKLSSVLTLNTDFGDPINMEVTLYETIP 711

Query: 750 RLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEA 808
           RLIEQ++ SFS E +E+AV+ELNRI+SEG+V++TRAVAS+GGIFPLVKLI+EGS RAVEA
Sbjct: 712 RLIEQMQSSFSLEVQESAVVELNRIVSEGIVNATRAVASKGGIFPLVKLIDEGSERAVEA 771

Query: 809 GLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRALRLLRNLP 857
            LAILYNLSMDSENH AI+AAGAVPALRRI LSQR QW +AL LLR LP
Sbjct: 772 ALAILYNLSMDSENHPAIVAAGAVPALRRIALSQRVQWQQALYLLRTLP 820

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529058|ref|XP_003533114.1| PREDICTED: uncharacterized protein LOC100793128 [Glycine max]

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/804 (62%), Positives = 622/804 (77%), Gaps = 13/804 (1%)

Query: 54  FFFKPSTYAVGTVRARAGNGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGL 113
            F K ++      RA     DG  DA    +S+ +I  ++ SSS  GD YVALFV+MLGL
Sbjct: 32  LFPKSNSKLAFVARASGNARDGTVDA----TSAPEIDAVTSSSSGLGDGYVALFVRMLGL 87

Query: 114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSI 173
           D DPLDREQA+ ALWKYSLGGKKCID +MQF GCINL VNLLRSESS+ACEAAAGLLRS+
Sbjct: 88  DRDPLDREQAIVALWKYSLGGKKCIDTLMQFPGCINLVVNLLRSESSSACEAAAGLLRSL 147

Query: 174 SSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILP 233
           SS+N+YR+ VA+ GAIEEI  LL + SL  EVKEQS+  LWNLSVD+K  +KI+ T+ILP
Sbjct: 148 SSVNLYRNSVADSGAIEEINRLLRQSSLAPEVKEQSLSALWNLSVDEKLCIKISKTEILP 207

Query: 234 LLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKE 293
           L IK L DE++KVKEAAGG+LANLALS+ NH+I+VEAGVIPKLA  L +N+EGSKVIRKE
Sbjct: 208 LAIKYLGDEDIKVKEAAGGILANLALSRVNHDIMVEAGVIPKLAKFLTSNLEGSKVIRKE 267

Query: 294 ARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGP 353
           ARNAL+EL KD Y+RIL+IEEGLVPVP++ A A+KSF P LH WP+LPDGTEIERTS+ P
Sbjct: 268 ARNALLELVKDKYHRILVIEEGLVPVPLIDAAAFKSFTPGLHLWPTLPDGTEIERTSRLP 327

Query: 354 SKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDR 413
           S++GA+ELLLGLNV DKNAN++EAK+NA+VGR++Q FL R+GA+E E+   P SE   D 
Sbjct: 328 SRYGASELLLGLNVDDKNANLEEAKVNAIVGRTQQQFLARVGALEMEEKTMPHSECSNDL 387

Query: 414 QLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD 473
           + TLLPW+DGVARLVLIL LED+ AI +AAESIA   INEHMR+ F+EAGAIK+LV+LL+
Sbjct: 388 RFTLLPWMDGVARLVLILELEDKSAIIKAAESIATACINEHMRIAFREAGAIKHLVRLLN 447

Query: 474 HSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRI 533
              +AV+LA T ALERLSVS  VC+++EAEGV+ PLV+ LK  +I+ +++EK+L+IL RI
Sbjct: 448 CDDNAVQLAATQALERLSVSNIVCRVIEAEGVLGPLVSILKCSEIAGTIVEKSLNILARI 507

Query: 534 LDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFI 593
           LDPSKEM+ K YD P N SEK    A+    S   +    E  VS+T T    +LDSVFI
Sbjct: 508 LDPSKEMQLKSYDGPANESEKAFGGAKGDCVSTGFSST--EQTVSQTYTR-NDILDSVFI 564

Query: 594 GRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDI 653
             ++ I+K+  P LQ KAA++LEF+ + DP++  IIS DIESGL++ FQQK L+ +    
Sbjct: 565 AHLVEILKSFPPSLQEKAATVLEFVALTDPTLAPIISLDIESGLNSAFQQKILKIS---- 620

Query: 654 EGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHY 713
           E +  E YA++ EEA  AISA +RLLT+LLD +QFC  INS  FI LLR IL+S++PLH 
Sbjct: 621 EDQFSEAYAIEFEEAGFAISAASRLLTRLLDCEQFCHKINSLQFIDLLRGILRSSIPLHN 680

Query: 714 KDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNR 772
           K+WVAACLVKLS LSG       PIN+E+TLYE IPRL+EQI+ SFS EA+E AV+ELNR
Sbjct: 681 KEWVAACLVKLSSLSGSIASL-YPINVEITLYETIPRLLEQIRTSFSPEAQETAVVELNR 739

Query: 773 IISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAV 832
           IISEGVVDST A+ S+  I+ LV LIEEGS+RAVEA LAILYNLSMDSENHSA++AAGAV
Sbjct: 740 IISEGVVDSTEAIISDEAIYSLVNLIEEGSDRAVEASLAILYNLSMDSENHSALVAAGAV 799

Query: 833 PALRRIVLSQRPQWTRALRLLRNL 856
             L+RIVL+ R  W RAL LLR L
Sbjct: 800 QVLKRIVLANRTHWERALLLLRTL 823

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521127|ref|XP_003529209.1| PREDICTED: uncharacterized protein LOC100810447 [Glycine max]

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/804 (60%), Positives = 606/804 (75%), Gaps = 37/804 (4%)

Query: 54  FFFKPSTYAVGTVRARAGNGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGL 113
            F K ++      RA     DGA DA    +S + I  ++ +SS   D YVALFV+MLG+
Sbjct: 36  LFPKSNSKLAFVARANGNARDGAVDA----TSPLGIDAVTSTSSGLSDGYVALFVRMLGI 91

Query: 114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSI 173
           D DPLDREQA+ ALWKYSLGGKKCID +MQF GCINL VNLLRSES++ACEAAAGLLRS+
Sbjct: 92  DRDPLDREQAIVALWKYSLGGKKCIDTLMQFPGCINLVVNLLRSESNSACEAAAGLLRSL 151

Query: 174 SSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILP 233
           SS+N+YR+ VA+ GAIEE+  LL + SL SEVKEQS+ TLWNLSVD+K  +KI+ T+ILP
Sbjct: 152 SSVNLYRNSVADSGAIEELNRLLRQSSLASEVKEQSLSTLWNLSVDEKLCIKISKTEILP 211

Query: 234 LLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKE 293
           L I+ L+DE++KVKEA+GG+LANLA S+ NHNI+VEAGVIPKLA  L +N+EGS V+RK 
Sbjct: 212 LAIRYLDDEDIKVKEASGGILANLASSRVNHNIMVEAGVIPKLAKFLTSNLEGSNVLRKV 271

Query: 294 ARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGP 353
            RNAL+EL KD YY IL+IEEGLVPVP++ A A+KSF P +H WP LPDGTEIERTS+ P
Sbjct: 272 TRNALLELVKDKYYSILVIEEGLVPVPLIDAAAFKSFTPGIHLWPMLPDGTEIERTSRQP 331

Query: 354 SKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDR 413
           S++GA+ELLLGLN+ DKNAN++EAK+NA+VGR++Q FL R+GA+E E    P SE   D+
Sbjct: 332 SRYGASELLLGLNIDDKNANLEEAKVNAIVGRTQQQFLARVGALEMEQKTMPHSECSNDQ 391

Query: 414 QLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD 473
           + TLLPW+DGVARLVLIL LED  AI +AAESIA   INEHMR+ F+EAGAIK+LV+LL+
Sbjct: 392 RFTLLPWMDGVARLVLILELEDRFAIIKAAESIATACINEHMRIAFREAGAIKHLVRLLN 451

Query: 474 HSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRI 533
              ++V+LA T ALERLSVS  VC+++EAEGV+ PLV+ LK  +I+ +++EK+L+IL RI
Sbjct: 452 CDDNSVQLAATQALERLSVSNIVCRVIEAEGVLGPLVSILKCSEIAGTILEKSLNILARI 511

Query: 534 LDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFI 593
           LDPSK M+ KFYD PVNGSEK                                +LDSVFI
Sbjct: 512 LDPSKVMQLKFYDGPVNGSEKPF---------------------------RNDILDSVFI 544

Query: 594 GRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDI 653
             ++ IMK+S P LQ KAA++LEF+ + DP++  II  DIESGL++ FQQK L+ +    
Sbjct: 545 AHLVEIMKSSPPSLQEKAATVLEFVALTDPTLAPIIFLDIESGLNSAFQQKILKIS---- 600

Query: 654 EGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHY 713
           E +  E YA++ EEA LAI+A +RLLT+LLD +QF   INS+ FI LLR IL+S +PLH 
Sbjct: 601 EDQFSEAYAIEFEEAGLAIAAASRLLTRLLDHEQFRHKINSSQFIDLLRGILRSCIPLHN 660

Query: 714 KDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNR 772
           K WVA CLVKLS LSG       PIN+EVTLYE IPRL+EQIK SFS EA+E AV+ELNR
Sbjct: 661 KKWVATCLVKLSSLSGSITSL-YPINVEVTLYETIPRLLEQIKTSFSPEAQETAVVELNR 719

Query: 773 IISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAV 832
           IISEGVVD T A+ S+  I+ LV LIEEGS+RAVEA LAILYNLSMDSENHSA++AAGAV
Sbjct: 720 IISEGVVDYTEAIISDEAIYSLVNLIEEGSDRAVEASLAILYNLSMDSENHSALVAAGAV 779

Query: 833 PALRRIVLSQRPQWTRALRLLRNL 856
             L+R VL+ RP W RAL LLR L
Sbjct: 780 QVLKRSVLANRPHWERALLLLRIL 803

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438777|ref|XP_003589665.1| U-box domain-containing protein [Medicago truncatula] gi|355478713|gb|AES59916.1| U-box domain-containing protein [Medicago truncatula]

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/789 (62%), Positives = 610/789 (77%), Gaps = 30/789 (3%)

Query: 71  GNGDGASDAIPQQSSSVDIKEI-SGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWK 129
            NG       P   +S +I E+ S SSS FGDSYVALFV+MLGLD+DPLDREQA+  LW+
Sbjct: 63  NNGHSDHSTAP---ASPEIDEVESESSSDFGDSYVALFVRMLGLDHDPLDREQAIITLWQ 119

Query: 130 YSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAI 189
           YSLGGKK ID IMQF GCINL VNLLR+ESS+ACEAAAGLL+S+SSI+ YR+ VA+ GAI
Sbjct: 120 YSLGGKKYIDNIMQFPGCINLVVNLLRAESSSACEAAAGLLQSLSSIDQYRNSVADSGAI 179

Query: 190 EEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEA 249
           EEI  LLT+ SL SEVK QS+  LWNLSVD+K R+KIA +D+L L +K L+DE+MKVKEA
Sbjct: 180 EEINRLLTQSSLASEVKVQSLNMLWNLSVDEKLRVKIAKSDLLLLAMKYLDDEDMKVKEA 239

Query: 250 AGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRI 309
           AGG+LANLALS  NH+++VEAGVIPKLA  L    E S+VIRKEARNAL+EL KDDYYRI
Sbjct: 240 AGGILANLALSHVNHDMMVEAGVIPKLAKFLPYESEVSRVIRKEARNALLELVKDDYYRI 299

Query: 310 LIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSD 369
           L+IEEGLVPVP++GA AYKS+ P  +  P+ PDGTEIERT   PS+FGA ELL+GLNV D
Sbjct: 300 LVIEEGLVPVPLIGAAAYKSYNPRSYEAPAFPDGTEIERTYDKPSRFGAAELLIGLNV-D 358

Query: 370 KNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDR-QLTLLPWIDGVARLV 428
            NAN+DEAK+NA++G+++Q FLVR+GAIE E+    +SE   D+ +LTLL WIDGVARLV
Sbjct: 359 NNANVDEAKVNAIIGQTQQQFLVRVGAIEMEET-STRSECSDDQPRLTLLHWIDGVARLV 417

Query: 429 LILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALE 488
           LIL LED+ AI RAAESIA   INEHMR+ FKEAGA+++LV+LL  + +AV+LA T ALE
Sbjct: 418 LILELEDKSAIVRAAESIASACINEHMRIAFKEAGAVRHLVRLLSWNDNAVQLAATQALE 477

Query: 489 RLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP 548
           +LS S  VC+++E EG + PLV+ LK  D++ ++ EK+L++L +ILDP+KEM+ KF    
Sbjct: 478 KLSASNVVCRVIETEGGLAPLVSILKCSDVAGAIAEKSLNVLAQILDPNKEMQLKF---- 533

Query: 549 VNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQ 608
            NGS+K  D A+  D S EL+    E AVS+T      +L+SVF  R++ I+K+  P LQ
Sbjct: 534 -NGSKKAFDGAD--DGSKELSST--EQAVSKTNPR-SDILNSVFTARLVEILKSFLPSLQ 587

Query: 609 RKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEA 668
            KAAS+LEF+ +IDP++  IIS DIE           + +T  D+E +    YA+++EEA
Sbjct: 588 EKAASVLEFVALIDPTLSPIISVDIE-----------IAETKFDVEDQFSAAYAIELEEA 636

Query: 669 SLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLS 728
            LAISA +RLLT+LLDSKQF + IN +HFI  LRKILK+++PL  KDWVAACLVKLS LS
Sbjct: 637 GLAISAASRLLTRLLDSKQFREKINVSHFIDTLRKILKTHIPLRSKDWVAACLVKLSSLS 696

Query: 729 GPDQDFENPINMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVAS 787
           G D    NPIN++VTLY+ IPRL+EQIK SFS EARE AV+EL+RI+SEGVVDST  + S
Sbjct: 697 GYDTS-TNPINVDVTLYDTIPRLVEQIKTSFSLEAREKAVVELSRIVSEGVVDSTEHIIS 755

Query: 788 EGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWT 847
           EG ++ LVKLIEEG+ R +EA L ILYNLSMDSENHSA++AAGAVPALRRIVLS++PQW 
Sbjct: 756 EGAVYSLVKLIEEGNERGIEASLKILYNLSMDSENHSALLAAGAVPALRRIVLSEKPQWQ 815

Query: 848 RALRLLRNL 856
           RAL LLR+L
Sbjct: 816 RALHLLRSL 824

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688260|ref|NP_173731.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|25083231|gb|AAN72053.1| unknown protein [Arabidopsis thaliana] gi|31711764|gb|AAP68238.1| At1g23180 [Arabidopsis thaliana] gi|110742235|dbj|BAE99044.1| hypothetical protein [Arabidopsis thaliana] gi|332192231|gb|AEE30352.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/798 (61%), Positives = 610/798 (76%), Gaps = 45/798 (5%)

Query: 69  RAGNGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALW 128
           R+ +G+  SD   +    V     S SSS  GDSYV LFV MLGLD DPLDREQA+E LW
Sbjct: 74  RSNSGETGSDTTLKDGEEVR----SESSSGVGDSYVGLFVGMLGLDNDPLDREQAIETLW 129

Query: 129 KYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGA 188
           KYSLGGKKCID IMQF GC+NL VNLL+SESS+ACEAAAGL+RSI+S+N+YR+ VAE GA
Sbjct: 130 KYSLGGKKCIDAIMQFHGCLNLIVNLLKSESSSACEAAAGLIRSIASVNLYRESVAESGA 189

Query: 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKE 248
           +EEIT LL+RPSL + VKEQ +C LWNL+VD++ R K+A+ DIL LLI  LED+++ VKE
Sbjct: 190 LEEITALLSRPSLATVVKEQCICALWNLTVDEEIREKVADFDILRLLISFLEDDDVNVKE 249

Query: 249 AAGGVLANLALSKSNHNILVEAGVIPKLAMLLKA-NVE--GSKVIRKEARNALIELAKDD 305
           AAGGVLANLALS+S H ILVE GVIPKLA LLKA N E  GSKVIRKEARN L+ELAKD+
Sbjct: 250 AAGGVLANLALSRSTHKILVEVGVIPKLAKLLKADNTENKGSKVIRKEARNVLLELAKDE 309

Query: 306 YYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGL 365
           YYRIL+IEEG+VP+P++GADAYKSFRP+L+SWPSLPDG  IE+T++ PS+FGA+ELLLGL
Sbjct: 310 YYRILVIEEGVVPIPIIGADAYKSFRPDLYSWPSLPDGINIEQTAKAPSRFGASELLLGL 369

Query: 366 NVSDKNA-NIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFP-IDRQLTLLPWIDG 423
           NV DKN  ++DEAKM A+VGR+ Q FL RIGAIE E  ++ +SE P   +QLTLLP +DG
Sbjct: 370 NV-DKNVDDVDEAKMKAIVGRTNQQFLARIGAIEFE--KEIKSEGPGKSQQLTLLPCVDG 426

Query: 424 VARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLL-DHSSDAVRLA 482
           VARLVLILGL DE A  RAAESIAD SINE MR+ F EAGA+K LV+LL +++ + V+L 
Sbjct: 427 VARLVLILGLADELAATRAAESIADASINEDMRVSFMEAGAVKPLVQLLANNNKETVKLP 486

Query: 483 TTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKS 542
              AL+ LS+SR VCQ +EAEG V  L+N LK  +IS ++ E  LDI+  ILDPSKEM+S
Sbjct: 487 VIRALKNLSLSRTVCQRIEAEGAVWFLINLLKQPEISLNVTEHVLDIIAHILDPSKEMES 546

Query: 543 KFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKT 602
           KFY+ PVNGS+                             S  +VLD+    R++ I KT
Sbjct: 547 KFYEGPVNGSK---------------------------ADSRKEVLDAAVFSRLVQIAKT 579

Query: 603 SYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYA 662
           + P+L R A S++EF  I +P+MDTIIS DI + LD   +QK LE+ +++ E  +  K+ 
Sbjct: 580 ASPNLLRNAISVIEFGIISNPNMDTIISKDITTVLDLALRQKVLEEPENEAEELE--KHL 637

Query: 663 LDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLV 722
           L +EEA L ISA +RLLTKLLDS+ F QTI++  FI+L+RKIL+S++PLHYKDWVAACLV
Sbjct: 638 LKLEEAGLTISAASRLLTKLLDSESFRQTIDTAVFIELVRKILRSSLPLHYKDWVAACLV 697

Query: 723 KLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSS--EAREAAVIELNRIISEGVVD 780
           KL+ LS P Q   NPIN+EVTLY+ IP L+EQ+ SFSS  E +EAAV+ELN+I+SEGV +
Sbjct: 698 KLTALSSPSQSLNNPINLEVTLYKTIPSLVEQM-SFSSSPETKEAAVLELNKIVSEGVPE 756

Query: 781 STRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVL 840
           S + +AS+GGI PLVKL+EE + R VEA L++LYNL+MDSENH+AII AGAVP LRRIV+
Sbjct: 757 SIQTLASQGGIEPLVKLLEERNERCVEASLSVLYNLTMDSENHTAIIRAGAVPVLRRIVM 816

Query: 841 SQRPQWTRALRLLRNLPV 858
           SQRPQW +ALRLLRNLPV
Sbjct: 817 SQRPQWEKALRLLRNLPV 834

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	858
TAIR|locus:2201205	834	AT1G23180 "AT1G23180" [Arabido	0.571	0.587	0.593	1.8e-142
TAIR|locus:2096687	355	AT3G01400 [Arabidopsis thalian	0.157	0.380	0.285	1.7e-09
TAIR|locus:2205866	2114	AT1G44120 [Arabidopsis thalian	0.115	0.046	0.333	4.6e-09
TAIR|locus:2204700	2136	AT1G77460 "AT1G77460" [Arabido	0.142	0.057	0.357	6.4e-09
TAIR|locus:2178818	357	AT5G58680 "AT5G58680" [Arabido	0.155	0.372	0.267	4.8e-08
TAIR|locus:2130699	472	AT4G16490 "AT4G16490" [Arabido	0.233	0.423	0.248	3.3e-05
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.171	0.234	0.264	1.5e-07
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.269	0.365	0.255	2.2e-07
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.155	0.217	0.275	2.3e-07
CGD|CAL0001835	585	VAC8 [Candida albicans (taxid:	0.163	0.239	0.268	3.4e-07

TAIR|locus:2201205 AT1G23180 "AT1G23180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
 Identities = 299/504 (59%), Positives = 365/504 (72%)

Query:    69 RAGNGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALW 128
             R+ +G+  SD   +    V     S SSS  GDSYV LFV MLGLD DPLDREQA+E LW
Sbjct:    74 RSNSGETGSDTTLKDGEEVR----SESSSGVGDSYVGLFVGMLGLDNDPLDREQAIETLW 129

Query:   129 KYSLGGKKCIDYIMQFSGCINLTVNXXXXXXXXXXXXXXXXXXXISSINVYRDLVAECGA 188
             KYSLGGKKCID IMQF GC+NL VN                   I+S+N+YR+ VAE GA
Sbjct:   130 KYSLGGKKCIDAIMQFHGCLNLIVNLLKSESSSACEAAAGLIRSIASVNLYRESVAESGA 189

Query:   189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKE 248
             +EEIT LL+RPSL + VKEQ +C LWNL+VD++ R K+A+ DIL LLI  LED+++ VKE
Sbjct:   190 LEEITALLSRPSLATVVKEQCICALWNLTVDEEIREKVADFDILRLLISFLEDDDVNVKE 249

Query:   249 AAGGVLANLALSKSNHNILVEAGVIPKLAMLLKA-NVE--GSKVIRKEARNALIELAKDD 305
             AAGGVLANLALS+S H ILVE GVIPKLA LLKA N E  GSKVIRKEARN L+ELAKD+
Sbjct:   250 AAGGVLANLALSRSTHKILVEVGVIPKLAKLLKADNTENKGSKVIRKEARNVLLELAKDE 309

Query:   306 YYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGL 365
             YYRIL+IEEG+VP+P++GADAYKSFRP+L+SWPSLPDG  IE+T++ PS+FGA+ELLLGL
Sbjct:   310 YYRILVIEEGVVPIPIIGADAYKSFRPDLYSWPSLPDGINIEQTAKAPSRFGASELLLGL 369

Query:   366 NVSDKNAN-IDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFP-IDRQLTLLPWIDG 423
             NV DKN + +DEAKM A+VGR+ Q FL RIGAIE E  ++ +SE P   +QLTLLP +DG
Sbjct:   370 NV-DKNVDDVDEAKMKAIVGRTNQQFLARIGAIEFE--KEIKSEGPGKSQQLTLLPCVDG 426

Query:   424 VARLVLILGLEXXXXXXXXXXXXXXXXXNEHMRMLFKEAGAIKYLVKLL-DHSSDAVRLA 482
             VARLVLILGL                  NE MR+ F EAGA+K LV+LL +++ + V+L 
Sbjct:   427 VARLVLILGLADELAATRAAESIADASINEDMRVSFMEAGAVKPLVQLLANNNKETVKLP 486

Query:   483 TTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKS 542
                AL+ LS+SR VCQ +EAEG V  L+N LK  +IS ++ E  LDI+  ILDPSKEM+S
Sbjct:   487 VIRALKNLSLSRTVCQRIEAEGAVWFLINLLKQPEISLNVTEHVLDIIAHILDPSKEMES 546

Query:   543 KFYDIPVNGSEKGLDAAESLDPSI 566
             KFY+ PVNGS K     E LD ++
Sbjct:   547 KFYEGPVNGS-KADSRKEVLDAAV 569

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 40/140 (28%), Positives = 74/140 (52%)

Query:   180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSL 239
             ++ +A  GAI+ +   L   + T+  KE + C L  LS  +++++ I  +  +PLL+  L
Sbjct:   139 KESIASSGAIKPLVRALKMGTPTA--KENAACALLRLSQIEENKVAIGRSGAIPLLVNLL 196

Query:   240 EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI 299
             E    + K+ A   L +L  +K N    V++G++  L  L+ A+  GS ++ K A    +
Sbjct:   197 ETGGFRAKKDASTALYSLCSAKENKIRAVQSGIMKPLVELM-ADF-GSNMVDKSAFVMSL 254

Query:   300 ELAKDDYYRILIIEEGLVPV 319
              ++  +  +  I+EEG VPV
Sbjct:   255 LMSVPES-KPAIVEEGGVPV 273

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205866 AT1G44120 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 4.6e-09, Sum P(3) = 4.6e-09
 Identities = 34/102 (33%), Positives = 56/102 (54%)

Query:   746 EAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEG-SNR 804
             E I  LI  +   SSE  +   +E   I+++ V +S  AV S GGI PL++++E G S +
Sbjct:   447 EGIQILIPYL-GLSSEQHQELSVEFLAILTDNVEESRWAVTSAGGIPPLLQILETGVSQK 505

Query:   805 AVEAGLAILYNLSMDSEN-HSAIIAAGAVPALRRIVLSQRPQ 845
             A +  + ++ NL   SE     +  AGA+PAL  ++ +  P+
Sbjct:   506 AKDDAVRVILNLCCHSEEIRLCVEKAGAIPALLGLLKNGGPK 547

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2204700 AT1G77460 "AT1G77460" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
 Identities = 49/137 (35%), Positives = 72/137 (52%)

Query:   726 CLSGPDQDFENPINMEVTLYEAIPRL--IEQIKSF---SSEAREAAVIELNRIISEGVVD 780
             CLSG   D       +V ++EAI +   I+   SF   SSE  +   +E+ +I++  V D
Sbjct:   452 CLSGLCHD-------KVGIWEAIGKREGIQLFISFLGLSSEQHQEYAVEMLKILTAQVDD 504

Query:   781 STRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSEN-HSAIIAAGAVPALRRIV 839
             S  AV + GGI PLV+L+E GS +A E    IL+NL   SE     +  AG +PA   ++
Sbjct:   505 SKWAVTAAGGIPPLVQLLETGSQKAKEDAACILWNLCCHSEEIRDCVERAGGIPAFLWLL 564

Query:   840 LSQRP--QWTRALRLLR 854
              +  P  Q T A  L++
Sbjct:   565 KTGGPNSQETSAKTLVK 581

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178818 AT5G58680 "AT5G58680" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
 Identities = 38/142 (26%), Positives = 73/142 (51%)

Query:   180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSL 239
             ++++   GA++ +   L   + T+  KE + C L  LS  +++++ I  +  +PLL+  L
Sbjct:   137 KEMIVSSGAVKPLVNALRLGTPTT--KENAACALLRLSQVEENKITIGRSGAIPLLVNLL 194

Query:   240 EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEA--RNA 297
             E+   + K+ A   L +L  +  N    VE+G++  L  L+  + E S ++ K A   N 
Sbjct:   195 ENGGFRAKKDASTALYSLCSTNENKTRAVESGIMKPLVELM-IDFE-SDMVDKSAFVMNL 252

Query:   298 LIELAKDDYYRILIIEEGLVPV 319
             L+   +    +  ++EEG VPV
Sbjct:   253 LMSAPES---KPAVVEEGGVPV 271

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR|locus:2130699 AT4G16490 "AT4G16490" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 52/209 (24%), Positives = 90/209 (43%)

Query:   116 DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNXXXXXXXXXXXXXXXXXXXISS 175
             DP  +E AV AL   SL  +     ++   G I   V                    ++ 
Sbjct:   238 DPWTQEHAVTALLNLSLHDQN--KAVIAAGGAIKSLVWVLKTGTETSKQNAACALLSLAL 295

Query:   176 INVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLL 235
             +   +  +  CGAI  +  LL   S     K+ ++ TL+ L   ++++ +      +  L
Sbjct:   296 LEENKGSIGACGAIPPLVSLLLNGSCRG--KKDALTTLYKLCTLQQNKERAVTAGAVKPL 353

Query:   236 IKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEAR 295
             +  + +E   + E A  VL++LA        +VE G I   A L++A  +GS   ++ A 
Sbjct:   354 VDLVAEEGTGMAEKAMVVLSSLAAIDDGKEAIVEEGGI---AALVEAIEDGSVKGKEFAI 410

Query:   296 NALIELAKDDYY-RILIIEEGLVPVPMVG 323
               L++L  D    R L++ EG +P P+VG
Sbjct:   411 LTLLQLCSDSVRNRGLLVREGAIP-PLVG 438

GO:0008150 "biological_process" evidence=ND

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 41/155 (26%), Positives = 78/155 (50%)

Query:   179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIK 237
             +RDL  +  AI  +   L+  S+  E +  ++  + +LS     +R+ IA    +P+L+K
Sbjct:   333 FRDLSGDMSAIRALVCKLSSQSI--EDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVK 390

Query:   238 SL-EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARN 296
              L  D + + +E A   + NL++ + N  +++ AG +  + ++L+A   GS   R+ A  
Sbjct:   391 LLTSDGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRA---GSMEARENAAA 447

Query:   297 ALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFR 331
              L  L+  D  +I+I   G + + +V    Y S R
Sbjct:   448 TLFSLSLADENKIIIGASGAI-MALVDLLQYGSVR 481

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
 Identities = 62/243 (25%), Positives = 104/243 (42%)

Query:    80 IPQQSSSVDIKEISGSSSTFGD-SYVALFVQMLGLDYDPLDREQAVEA--LWKYSLGGKK 136
             +PQ   S    +I GSSS+  D ++V   ++ L        R  A E   L K ++  + 
Sbjct:   322 LPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRV 381

Query:   137 CIDYIMQFSGCINLTVNXXXXXXXXXXXXXXXXXXXISSINVYRDLVAECGAIEEITGLL 196
             CI      +G I L V                    +S     +  + + GAI +I  +L
Sbjct:   382 CIAE----AGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVL 437

Query:   197 TRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256
                S+  E +E +  TL++LSV  ++++ I     +  LI  LE+   + K+ A   + N
Sbjct:   438 KNGSM--EARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFN 495

Query:   257 LALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGL 316
             L + + N +  V+ G++  L  LLK +  G  V   EA   L  L+ +   +  I E   
Sbjct:   496 LCIYQGNKSRAVKGGIVDPLTRLLK-DAGGGMV--DEALAILAILSTNQEGKTAIAEAES 552

Query:   317 VPV 319
             +PV
Sbjct:   553 IPV 555

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 136 (52.9 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
 Identities = 38/138 (27%), Positives = 71/138 (51%)

Query:   180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSL 239
             R  +AE GAI  +  LL+  S     +E ++  L NLS+ + ++  I ++  +P +++ L
Sbjct:   358 RICIAEAGAIPLLVNLLS--SSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVL 415

Query:   240 EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI 299
             +  +M+ +E A   L +L++   N   +  AG IP L  LL    +GS   +K+A  A+ 
Sbjct:   416 KTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLL---CDGSPRGKKDAATAIF 472

Query:   300 ELAKDDYYRILIIEEGLV 317
              L      ++  ++ G+V
Sbjct:   473 NLCIYQGNKVRAVKAGIV 490

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

CGD|CAL0001835 VAC8 [Candida albicans (taxid:5476)]

 Score = 114 (45.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
 Identities = 40/149 (26%), Positives = 76/149 (51%)

Query:   228 NTDIL-PLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVI-PKLAMLLKANVE 285
             N D+L P+LI  L+  + +V+ AA G L NLA++  N  ++VE G + P +  ++  N+E
Sbjct:    85 NRDVLEPILIL-LQSADSEVQRAACGALGNLAVNTENKILIVEMGGLEPLIRQMMSTNIE 143

Query:   286 GSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTE 345
                 ++  A   +  LA  D  +  I + G + +P+      K  R + ++  +L + T 
Sbjct:   144 ----VQCNAVGCITNLATQDDNKSKIAKSGAL-IPLTKLAKSKDIRVQRNATGALLNMTH 198

Query:   346 IERTSQGPSKFGANELLLGLNVSDKNANI 374
                  Q     GA  +L+ L +S+++A++
Sbjct:   199 SGENRQELVNAGAVPVLVSL-LSNEDADV 226

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IEA

GO:0071561 "nucleus-vacuole junction" evidence=IEA

GO:0043495 "protein anchor" evidence=IEA

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071562 "nucleus-vacuole junction assembly" evidence=IEA

GO:0071255 "CVT vesicle assembly" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	858
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-10
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-08
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-06
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	3e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-04
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	4e-04
cd13394	597	cd13394, Syo1_like, Fungal symportin 1 (syo1) and	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 145 SGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YRDLVAECGAIEEITGLLTRPSLTS 203
           +G +   V+LL S        AA  L ++S+ N      V E G +  +  LL       
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE-- 63

Query: 204 EVKEQSMCTLWNLSVDKKH-RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258
           EV + ++  L NL+   +  +L +     +P L+  L+  N  +++ A G L+NLA
Sbjct: 64  EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSL 239
           + V + G +  +  LL+       V+ ++   L NLS  +  +   +     LP L++ L
Sbjct: 1   EAVIQAGGLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL 58

Query: 240 EDENMKVKEAAGGVLANLALSKSNHNILV-EAGVIPKLAMLLKANVEGSKVIRKEARNAL 298
           + E+ +V +AA   L NLA    ++ ++V EAG +PKL  LL ++ E    I+K A  AL
Sbjct: 59  KSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNED---IQKNATGAL 115

Query: 299 IELA 302
             LA
Sbjct: 116 SNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 59.0 bits (143), Expect = 1e-08
 Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 759 SSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSM 818
           SSE ++   + L  I+++ V +S  A+ + GGI PLV+L+E GS +A E    +L+NL  
Sbjct: 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCC 517

Query: 819 DSENHSAII-AAGAVPAL 835
            SE+  A + +AGAVPAL
Sbjct: 518 HSEDIRACVESAGAVPAL 535

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 741 EVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEE 800
            V     +P L+  + S     +  A   L   +S G  D+ +AV   GG+  LV+L++ 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWAL-SNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 801 GSNRAVEAGLAILYNLSMDSENHS-AIIAAGAVPALRRIVLSQRPQWTR-ALRLLRNL 856
                V+A L  L NL+   E++   ++ AG VP L  ++ S      + A   L NL
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   V +L    + + + +A  AL   S G    I  +++ +G +   V LL+SE     
Sbjct: 9   LPALVSLLSSSDENV-QREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVV 66

Query: 164 EAAAGLLRSISSINV-YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS 217
           +AA   LR++++     + +V E G + ++  LL   +   ++++ +   L NL+
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNE--DIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 29/205 (14%)

Query: 118 LDREQAVEALWKYSL---GGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSIS 174
            D E  V+A W  S    G  + I  ++   G     V LL  ES+     A   LRS+ 
Sbjct: 255 RDPEVLVDACWAISYLSDGPNEKIQAVLD-VGIPGRLVELLSHESAKIQTPA---LRSVG 310

Query: 175 SINVYRDL----VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK-IANT 229
           +I    D     +  CGA++    LL+ P     +++++  T+ N++     +++ + + 
Sbjct: 311 NIVTGSDDQTQVIINCGALKAFRSLLSSPK--ENIRKEACWTISNITAGNTEQIQAVIDA 368

Query: 230 DILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH----NILVEAGVIPKLAMLLKANVE 285
           +++P LI  L     K+K+ A   ++N      N       LV  G I  L  LL     
Sbjct: 369 NLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDV--- 425

Query: 286 GSKVIRKEARNALIELAKDDYYRIL 310
                     N +IE+A D    IL
Sbjct: 426 --------VDNKIIEVALDAIENIL 442

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 422 DGVARLVLILGLEDERAIARAAESIADISIN-EHMRMLFKEAGAIKYLVKLLDHSSDAVR 480
            G+  LV +L   DE     AA +++++S           EAG +  LV+LL    + V 
Sbjct: 7   GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVV 66

Query: 481 LATTHALERLSVSRGVC-QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRI 533
            A   AL  L+        I+   G V  LVN L     +E + +     L  +
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD--SSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 213 LWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGV 272
           L NL+ D K  LK+   +I+ LL+K+L+ +N ++       L  L++   N N + E G+
Sbjct: 269 LLNLAEDIKVELKMRRKNIVALLVKALDRDNSELLILVVSFLKKLSIFDENKNEMEENGI 328

Query: 273 IPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVP--VPMVGADAYK 328
           I KL  L     E    +       L  L+ D   R  ++  GL+P  V ++  D + 
Sbjct: 329 IEKLLKLFPCQHED---LLNITLRLLFNLSFDTGLRPKMVNGGLLPKLVSLLDNDNHH 383

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

>gnl|CDD|240521 cd13394, Syo1_like, Fungal symportin 1 (syo1) and similar proteins

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 442 AAESIADISINEHMRMLFKEAGAIKYLV-KLLDHSSDAVRLATTHALERLSVSRG--VCQ 498
           A  +I+++  +  MR L  +   ++ L+ +LLD S+  V +    AL  L++  G  VC 
Sbjct: 57  ALGAISNLIEDPSMRKLLLKEKLVQILIERLLDDSNTEVVVEAFGALRNLAIEEGYDVCV 116

Query: 499 IMEAEGVVHPLVNTLKNLDISESL 522
            +  + ++ PL   LK   IS SL
Sbjct: 117 HLWRKDILTPLEALLKK--ISSSL 138

This family of eukaryotic proteins includes Saccharomyces cerevisiae Ydl063c and Chaetomium thermophilum Syo1, which mediate the co-import of two ribosomal proteins, Rpl5 and Rpl11 (which both interact with 5S rRNA) into the nucleus. Import precedes their association with rRNA and subsequent ribosome assembly in the nucleolus. The primary structure of syo1 is a mixture of Armadillo- (ARM, N-terminal part of syo1) and HEAT-repeats (C-terminal part of syo1). Length = 597

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	858
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.97
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.97
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.91
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.86
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.83
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.76
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.71
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.68
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.61
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.6
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.57
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.56
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.46
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.46
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.46
PRK09687	280	putative lyase; Provisional	99.45
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.4
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.4
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.34
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.34
PRK09687	280	putative lyase; Provisional	99.26
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.25
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.25
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.21
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.19
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.18
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.14
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.1
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.1
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.04
PTZ00429	746	beta-adaptin; Provisional	98.95
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.93
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.73
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.72
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.69
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.63
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.63
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.61
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.57
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.57
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.54
PTZ00429	746	beta-adaptin; Provisional	98.52
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.52
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.5
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.43
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.41
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.39
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.35
TIGR02270	410	conserved hypothetical protein. Members are found	98.31
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.25
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.22
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.17
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.14
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.13
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.13
TIGR02270	410	conserved hypothetical protein. Members are found	98.08
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.04
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.02
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.99
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.89
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.86
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.82
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.79
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.73
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.71
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.7
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.66
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.66
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.62
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.58
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.55
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.5
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.47
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.46
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.44
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.43
PF05536	543	Neurochondrin: Neurochondrin	97.37
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.35
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.33
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.33
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.29
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.22
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.2
PF05536	543	Neurochondrin: Neurochondrin	97.19
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.13
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.08
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.08
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.03
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.0
KOG0567	289	consensus HEAT repeat-containing protein [General	96.9
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.9
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.88
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.85
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.79
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.78
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.63
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	96.62
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.57
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	96.47
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.32
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.32
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.28
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.27
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.26
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.23
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.23
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.16
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.16
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.15
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.02
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	95.91
COG5369	743	Uncharacterized conserved protein [Function unknow	95.85
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.81
COG5369	743	Uncharacterized conserved protein [Function unknow	95.72
KOG1242	569	consensus Protein containing adaptin N-terminal re	95.7
KOG0567	289	consensus HEAT repeat-containing protein [General	95.66
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.52
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.44
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	95.4
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.2
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.06
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	94.89
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.6
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	94.45
COG5096	757	Vesicle coat complex, various subunits [Intracellu	94.43
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.25
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.15
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.78
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.77
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.72
PRK14707	2710	hypothetical protein; Provisional	93.46
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	93.45
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	93.19
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.09
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	93.0
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	92.84
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	92.79
PF05004	309	IFRD: Interferon-related developmental regulator (	92.62
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.59
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.58
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.47
PF05004	309	IFRD: Interferon-related developmental regulator (	92.04
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	91.91
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	91.56
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.04
KOG3036	293	consensus Protein involved in cell differentiation	90.87
KOG2062	929	consensus 26S proteasome regulatory complex, subun	90.68
KOG3036	293	consensus Protein involved in cell differentiation	90.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	90.6
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	90.37
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	90.25
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	90.19
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	88.26
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	88.21
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	88.03
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	87.89
COG5116	926	RPN2 26S proteasome regulatory complex component [	87.62
PF08045	257	CDC14: Cell division control protein 14, SIN compo	87.43
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	86.81
KOG2032	533	consensus Uncharacterized conserved protein [Funct	86.07
KOG2025	892	consensus Chromosome condensation complex Condensi	85.99
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	85.77
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	85.52
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	85.4
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	85.08
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	84.68
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	84.01
PF07814	361	WAPL: Wings apart-like protein regulation of heter	83.92
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	83.71
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	83.66
PRK14707	2710	hypothetical protein; Provisional	83.54
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	82.76
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	82.6
KOG2062	929	consensus 26S proteasome regulatory complex, subun	82.5
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	82.07
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	82.04
KOG0414	1251	consensus Chromosome condensation complex Condensi	81.88
KOG0414	1251	consensus Chromosome condensation complex Condensi	81.52
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	80.47
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	80.28
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	80.14

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=8.4e-52  Score=505.49  Aligned_cols=684  Identities=18%  Similarity=0.153  Sum_probs=512.9

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc---
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN---  177 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~---  177 (858)
                      .|++|.|+.+|. +.+..+|.+++.+|.+++.++.+ +..++ ..|++|+|+.+|++++.+.|+.|+++|++|+.+.   
T Consensus        57 aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~~e~n-k~~Iv-~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D  133 (2102)
T PLN03200         57 SQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCKEEDL-RVKVL-LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSD  133 (2102)
T ss_pred             cCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCHHH-HHHHH-HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchh
Confidence            899999999997 88889999999999999998765 45666 6999999999999999999999999999999863   


Q ss_pred             hhHHH-HHhcCcHHHHHHHhcCCCC-CHHHHHHHHHHHHHhccCcchH-HHHHhCCCHHHHHHHHccCCHHHHHHHHHHH
Q 003008          178 VYRDL-VAECGAIEEITGLLTRPSL-TSEVKEQSMCTLWNLSVDKKHR-LKIANTDILPLLIKSLEDENMKVKEAAGGVL  254 (858)
Q Consensus       178 ~~~~~-i~~~g~i~~Lv~lL~~~~~-~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L  254 (858)
                      .++.. ++..|+||.|+.++++++. +..+++.++.+|+|||.+++++ ..+++.|+++.|+.+|+++++..+..|+++|
T Consensus       134 ~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aL  213 (2102)
T PLN03200        134 HVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLL  213 (2102)
T ss_pred             hhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            35544 5579999999999998731 2346678899999999998886 4567999999999999999999999999999


Q ss_pred             HHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCc
Q 003008          255 ANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRP  332 (858)
Q Consensus       255 ~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~  332 (858)
                      .+++.. ++.+..+++.|+||.|+++|++++  .+.+|+.|+++|+|+|. +++++..+++.|+++ +|++++.  .+  
T Consensus       214 a~Lass~ee~~~aVIeaGaVP~LV~LL~sg~--~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp-~LI~lL~--sp--  286 (2102)
T PLN03200        214 ARLMMAFESSISKVLDAGAVKQLLKLLGQGN--EVSVRAEAAGALEALSSQSKEAKQAIADAGGIP-ALINATV--AP--  286 (2102)
T ss_pred             HHHHcCChHHHHHHHHCCCHHHHHHHHccCC--ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH-HHHHHHh--Cc--
Confidence            988866 568889999999999999998753  33589999999999999 589999999999999 6999741  10  


Q ss_pred             cCCCCCCCCCcchhhcc-cCCchhhHHHHHHhccCCCCCCccchHHHHhhhhh-----hhhhhHHHHhhcccccCCCCCC
Q 003008          333 ELHSWPSLPDGTEIERT-SQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVG-----RSRQHFLVRIGAIESEDGRKPQ  406 (858)
Q Consensus       333 ~l~~~~~~~~~~~~~~~-~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~-----~~~~~~L~~~~~~~~~~~~~~~  406 (858)
                               . .+.++. .....+..++|+|.|++.+...      .+..+..     ++..+.....+.+...   ...
T Consensus       287 ---------~-~e~~~~~~~~~Lqe~AvwALsNIcgg~~~------ll~~L~~ll~s~rd~~~~ada~gALayl---l~l  347 (2102)
T PLN03200        287 ---------S-KEFMQGEFAQALQENAMGALANICGGMSA------LILYLGELSESPRSPAPIADTLGALAYA---LMV  347 (2102)
T ss_pred             ---------c-hhhhccccchHHHHHHHHHHHHHhCCchh------hHHHHHHhhcccchHHHHHHHHhhHHHH---HHh
Confidence                     0 000011 1113356699999999865311      0111100     0000000000000000   000


Q ss_pred             CCCCcccccccccccccHHHHHHHhCCCCHHH-HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHH
Q 003008          407 SEFPIDRQLTLLPWIDGVARLVLILGLEDERA-IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH  485 (858)
Q Consensus       407 l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v-~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~  485 (858)
                      +..+.... ..+....+.+.|+.+++++++.. +..+..+|..+..++..++.+.+.++++.|+.||...+.++|..+++
T Consensus       348 ~d~~~~~~-~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~  426 (2102)
T PLN03200        348 FDSSAEST-RAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR  426 (2102)
T ss_pred             cCCchhhh-hhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence            00011111 11111236789999999987764 88999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCCh
Q 003008          486 ALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDP  564 (858)
Q Consensus       486 aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~  564 (858)
                      +|++|+. +.+.++.+.+.|+++.|+.+|..++  ..+++.++++|++++..  ....+..+.+.|++|+|+++|.+++.
T Consensus       427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s--~~iQ~~A~~~L~nLa~~--ndenr~aIieaGaIP~LV~LL~s~~~  502 (2102)
T PLN03200        427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSS--EQQQEYAVALLAILTDE--VDESKWAITAAGGIPPLVQLLETGSQ  502 (2102)
T ss_pred             HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence            9999997 6888999999999999999999554  88999999999999873  22355678899999999999999999


Q ss_pred             hHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHh
Q 003008          565 SIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQ  643 (858)
Q Consensus       565 ~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~  643 (858)
                      +++.+|+ +|.|++.+.......+.+.|++|+|+++|++++...|..|+++|.++..+.+....          ..++  
T Consensus       503 ~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I----------~~Lv--  570 (2102)
T PLN03200        503 KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI----------SQLT--  570 (2102)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH----------HHHH--
Confidence            9999999 99999976544315566889999999999999999999999999999876544311          2222  


Q ss_pred             hhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhc----ccchHHHHHHHHHHhhccCCCchhhHHHH
Q 003008          644 KALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQ----TINSTHFIKLLRKILKSNVPLHYKDWVAA  719 (858)
Q Consensus       644 ~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  719 (858)
                      .++...+..         .         .....+.+.+++......+    ......++..+..++++. ....+.....
T Consensus       571 ~LLlsdd~~---------~---------~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~  631 (2102)
T PLN03200        571 ALLLGDLPE---------S---------KVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAAS  631 (2102)
T ss_pred             HHhcCCChh---------H---------HHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHH
Confidence            222222110         0         0000111111211111000    000112223333333322 1122333444


Q ss_pred             HHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhh
Q 003008          720 CLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIE  799 (858)
Q Consensus       720 ~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~  799 (858)
                      ++..+..       .+...+..+.+.|+++|++.+|++++.++++.|++||.||+.....++...+++.|+|++|+++|.
T Consensus       632 iLsnL~a-------~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~  704 (2102)
T PLN03200        632 VLADIFS-------SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK  704 (2102)
T ss_pred             HHHHHhc-------CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh
Confidence            5555443       112334446689999999999999999999999999999998665545568899999999999999


Q ss_pred             cCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008          800 EGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL  856 (858)
Q Consensus       800 ~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l  856 (858)
                      +++.+++..|+.+|.|++.+++.+..+.+.|+++.|+++++++++.. +.|.++|.+|
T Consensus       705 ~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L  762 (2102)
T PLN03200        705 SSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL  762 (2102)
T ss_pred             CCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 8888888665

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=4.7e-49  Score=481.50  Aligned_cols=633  Identities=18%  Similarity=0.170  Sum_probs=480.9

Q ss_pred             ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCC--cccHHHHHHhcCcHHHHHHHHccCC---HHHHHHHHHHHHH
Q 003008           98 TFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGG--KKCIDYIMQFSGCINLTVNLLRSES---SAACEAAAGLLRS  172 (858)
Q Consensus        98 ~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~--~~~~~~ii~~~g~i~~Li~lL~~~~---~~~~~~a~~aL~n  172 (858)
                      +...|++|.|+.+|+ +.+++.|..|+++|.+++.+.  ++.+..++...|++|.|+.++++++   ..+++.++.+|+|
T Consensus        95 Iv~~GaIppLV~LL~-sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~n  173 (2102)
T PLN03200         95 VLLGGCIPPLLSLLK-SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRN  173 (2102)
T ss_pred             HHHcCChHHHHHHHH-CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            446899999999998 778899999999999999875  4333355657999999999999874   3456778999999


Q ss_pred             hhcCchhH-HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccC-CHHHHHH
Q 003008          173 ISSINVYR-DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDE-NMKVKEA  249 (858)
Q Consensus       173 Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~  249 (858)
                      |+...+++ ..+++.|++|.++.+|+++  ++..++.|+++|.+++.+ ++.+..+++.|+||.|+++|+++ ++.++++
T Consensus       174 Ls~~~en~~~~IIeaGaVp~LV~LLsS~--d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~  251 (2102)
T PLN03200        174 LCGSTDGFWSATLEAGGVDILVKLLSSG--NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAE  251 (2102)
T ss_pred             HhcCccchHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHH
Confidence            99988765 5678999999999999997  999999999999998865 56899999999999999999875 5689999


Q ss_pred             HHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCC------CCHHHHHHHHHHHHHHhcCh-h-------------hH
Q 003008          250 AGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVE------GSKVIRKEARNALIELAKDD-Y-------------YR  308 (858)
Q Consensus       250 a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~------~~~~~~~~a~~aL~nl~~~~-~-------------~~  308 (858)
                      |+|+|.||+.. ++.+..+++.|+++.|++++.+.+.      ....++++|.++|.|+|.+- .             ..
T Consensus       252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~  331 (2102)
T PLN03200        252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSP  331 (2102)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchH
Confidence            99999999986 6788899999999999999975331      12346899999999999852 1             11


Q ss_pred             HHH-HHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchh----hHHHHHHhccCCCCCCccchHHHHhhhh
Q 003008          309 ILI-IEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSK----FGANELLLGLNVSDKNANIDEAKMNAMV  383 (858)
Q Consensus       309 ~~i-~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~a~~aL~nL~~~~~~~~i~~~~~~~li  383 (858)
                      ..+ ...|++. +++.++.                      .+....+    ..+.|+|.+|..+.+...+.+...+++-
T Consensus       332 ~~~ada~gALa-yll~l~d----------------------~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa  388 (2102)
T PLN03200        332 APIADTLGALA-YALMVFD----------------------SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA  388 (2102)
T ss_pred             HHHHHHHhhHH-HHHHhcC----------------------CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH
Confidence            111 2245555 3444310                      0000111    1256778888765532222333333321


Q ss_pred             hhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHc
Q 003008          384 GRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEA  462 (858)
Q Consensus       384 ~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~  462 (858)
                      .      +  .              +++... +.+...++++.||.||...+.++|.+++++|++++ ++++.++.+.+.
T Consensus       389 s------l--~--------------gN~~l~-~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~  445 (2102)
T PLN03200        389 S------L--Y--------------GNAYLS-RKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR  445 (2102)
T ss_pred             H------h--c--------------CChHHH-HHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            1      0  0              111111 23334568999999999999999999999999977 668889999999


Q ss_pred             CcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc
Q 003008          463 GAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK  541 (858)
Q Consensus       463 g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  541 (858)
                      |+++.|+.+|.+++..+|+.++++|+|++. +++++..+.++|+||+|+.+|..++  ..+++.|+|+|+|++..  +..
T Consensus       446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~--~~iqeeAawAL~NLa~~--~~q  521 (2102)
T PLN03200        446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS--QKAKEDSATVLWNLCCH--SED  521 (2102)
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhCC--cHH
Confidence            999999999999999999999999999997 7788999999999999999998554  89999999999999972  222


Q ss_pred             cccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccc-------------------------------------h
Q 003008          542 SKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTT-------------------------------------S  583 (858)
Q Consensus       542 ~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~-------------------------------------~  583 (858)
                      .+..+...|++++|+++|.+.+++.+..++ +|+++....+.                                     +
T Consensus       522 ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~  601 (2102)
T PLN03200        522 IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV  601 (2102)
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence            333455789999999999999999999999 99988532111                                     0


Q ss_pred             hhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch-HHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccc
Q 003008          584 YGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSM-DTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYA  662 (858)
Q Consensus       584 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~  662 (858)
                      .+.+...|+++.|+++|++++..+++.|+++|.++..+.... ..+   ...+++..++                     
T Consensus       602 ~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~av---v~agaIpPLV---------------------  657 (2102)
T PLN03200        602 REGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESL---ATDEIINPCI---------------------  657 (2102)
T ss_pred             HHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHH---HHcCCHHHHH---------------------
Confidence            011224689999999999999999999999999998866543 333   1223333333                     


Q ss_pred             hhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhh
Q 003008          663 LDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEV  742 (858)
Q Consensus       663 l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i  742 (858)
                                        .++.......                       +.+...+|..+.....      ......+
T Consensus       658 ------------------~LLss~~~~v-----------------------~keAA~AL~nL~~~~~------~~q~~~~  690 (2102)
T PLN03200        658 ------------------KLLTNNTEAV-----------------------ATQSARALAALSRSIK------ENRKVSY  690 (2102)
T ss_pred             ------------------HHHhcCChHH-----------------------HHHHHHHHHHHHhCCC------HHHHHHH
Confidence                              3333222111                       1112222222221000      1111224


Q ss_pred             hhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCcc-
Q 003008          743 TLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSE-  821 (858)
Q Consensus       743 ~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~-  821 (858)
                      ...|++++|+++|++.+.++++.|+.||.|++...  +....+.+.|+|++|+++|+++++++|+.|+++|.+|....+ 
T Consensus       691 v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~--e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~  768 (2102)
T PLN03200        691 AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP--EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPV  768 (2102)
T ss_pred             HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc--hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCCh
Confidence            57899999999999999999999999999998655  356688899999999999999999999999999999987643 


Q ss_pred             ---chHHHHHcCchHHHHHhhhcCChhH---HHHHHHHhcC
Q 003008          822 ---NHSAIIAAGAVPALRRIVLSQRPQW---TRALRLLRNL  856 (858)
Q Consensus       822 ---~~~~i~~~g~v~~L~~ll~~~~~~~---~~al~~l~~l  856 (858)
                         ....+...|++.+|+.++.+.|.+.   ..|++.|..+
T Consensus       769 ~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l  809 (2102)
T PLN03200        769 DDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALL  809 (2102)
T ss_pred             hHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence               5567889999999999999999988   4588877655

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-34  Score=286.41  Aligned_cols=403  Identities=17%  Similarity=0.224  Sum_probs=347.8

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY  179 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~  179 (858)
                      .......+.-+++ +.|+.++..+..+++|++-+.+++  ..+.+.+++..|+.-+..+..+++.++++++.||+..+++
T Consensus        83 sres~epvl~llq-s~d~~Iq~aa~~alGnlAVn~enk--~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~n  159 (550)
T KOG4224|consen   83 SRESNEPVLALLQ-SCDKCIQCAAGEALGNLAVNMENK--GLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSN  159 (550)
T ss_pred             hhhhhhHHHHHHh-CcchhhhhhhhhhhccceeccCCc--eEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccc
Confidence            3445566788887 899999999999999999988875  3444899999999988888889999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008          180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL  259 (858)
Q Consensus       180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~  259 (858)
                      |..|...|++.++.++-++.  +..+++++..+|.|+....++|..++..|++|.|+.++++++++++.+|+.++.|++.
T Consensus       160 k~kiA~sGaL~pltrLaksk--dirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV  237 (550)
T KOG4224|consen  160 KVKIARSGALEPLTRLAKSK--DIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV  237 (550)
T ss_pred             hhhhhhccchhhhHhhcccc--hhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence            99999999999999988887  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCchHHHHhCC--CHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCC
Q 003008          260 SKSNHNILVEAG--VIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSW  337 (858)
Q Consensus       260 ~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~  337 (858)
                      +...|..+.+.+  .++.||++++.+   +++++..|..+|.|++.+++++..++++|++|. +++++            
T Consensus       238 d~~~Rk~Laqaep~lv~~Lv~Lmd~~---s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~-lv~Ll------------  301 (550)
T KOG4224|consen  238 DRRARKILAQAEPKLVPALVDLMDDG---SDKVKCQAGLALRNLASDTEYQREIVEAGSLPL-LVELL------------  301 (550)
T ss_pred             hHHHHHHHHhcccchHHHHHHHHhCC---ChHHHHHHHHHHhhhcccchhhhHHHhcCCchH-HHHHH------------
Confidence            999999999988  899999999887   455899999999999999999999999999995 99863            


Q ss_pred             CCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccc
Q 003008          338 PSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL  417 (858)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~  417 (858)
                                +.+..+.....+.+++|++.+                                                 
T Consensus       302 ----------qs~~~plilasVaCIrnisih-------------------------------------------------  322 (550)
T KOG4224|consen  302 ----------QSPMGPLILASVACIRNISIH-------------------------------------------------  322 (550)
T ss_pred             ----------hCcchhHHHHHHHHHhhcccc-------------------------------------------------
Confidence                      221112233333444444433                                                 


Q ss_pred             ccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCc-HHHHHHHHHHHHHhhc-Chh
Q 003008          418 LPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSS-DAVRLATTHALERLSV-SRG  495 (858)
Q Consensus       418 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~-~~v~~~a~~aL~~Ls~-~~~  495 (858)
                                                         +-+...++++|.+.+|+.+|+.++ .+++..|...|+||+. ++.
T Consensus       323 -----------------------------------plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~  367 (550)
T KOG4224|consen  323 -----------------------------------PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH  367 (550)
T ss_pred             -----------------------------------cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence                                               334444567999999999999776 7799999999999998 788


Q ss_pred             HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHH
Q 003008          496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIE  574 (858)
Q Consensus       496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~  574 (858)
                      ++..+.++|+||.++.++.+..  .++|.....|++.|+.   ....|..+.+.|.++.|+..+.+.+.+++-|+. ++.
T Consensus       368 n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal---~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~  442 (550)
T KOG4224|consen  368 NVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLAL---NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALI  442 (550)
T ss_pred             hhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHh---ccccHHHHhhcCCcceeecccCccchhhcccHHHHHH
Confidence            8999999999999999999555  8999999999999988   555677888999999999999999999999999 999


Q ss_pred             HhhccccchhhhHhhc------cchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008          575 AAVSETTTSYGKVLDS------VFIGRMIGIMKTSYPDLQRKAASILEFITIIDP  623 (858)
Q Consensus       575 ~L~~~~~~~~~~i~~~------g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~  623 (858)
                      |++++.+.. ..++++      |.-..|++++.|++..++.-+.|++..|..+.+
T Consensus       443 Nlss~v~~Y-arviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  443 NLSSDVEHY-ARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             hhhhhhHHH-HHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence            999877665 556553      334479999999999999999999999987544

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-32  Score=272.82  Aligned_cols=371  Identities=19%  Similarity=0.205  Sum_probs=329.7

Q ss_pred             hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchH
Q 003008          144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR  223 (858)
Q Consensus       144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~  223 (858)
                      ......++..++++.++.++..+..+++|++.+.+++..|++.+++.+|+.-+.++  ..+++..++.+++||+..+++|
T Consensus        83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd--~vevqcnaVgCitnLaT~d~nk  160 (550)
T KOG4224|consen   83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD--GVEVQCNAVGCITNLATFDSNK  160 (550)
T ss_pred             hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC--CcEEEeeehhhhhhhhccccch
Confidence            45677888899999999999999999999999999999999999999988877776  7889999999999999889999


Q ss_pred             HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008          224 LKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK  303 (858)
Q Consensus       224 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~  303 (858)
                      ..+...|++.+|+++-++.+..++.++.++|.|++...++|..++.+|++|.||+++++++.   .+|..+..++.|++.
T Consensus       161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~---dvqyycttaisnIaV  237 (550)
T KOG4224|consen  161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL---DVQYYCTTAISNIAV  237 (550)
T ss_pred             hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh---hHHHHHHHHhhhhhh
Confidence            99999999999999889999999999999999999999999999999999999999998743   388999999999998


Q ss_pred             ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhh
Q 003008          304 DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMV  383 (858)
Q Consensus       304 ~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li  383 (858)
                      +..+|+.+++.|  |                                                                 
T Consensus       238 d~~~Rk~Laqae--p-----------------------------------------------------------------  250 (550)
T KOG4224|consen  238 DRRARKILAQAE--P-----------------------------------------------------------------  250 (550)
T ss_pred             hHHHHHHHHhcc--c-----------------------------------------------------------------
Confidence            877776665554  0                                                                 


Q ss_pred             hhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 003008          384 GRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAG  463 (858)
Q Consensus       384 ~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g  463 (858)
                                                            ..++.|+.+..+++++++..|..+|.+++...+++..++++|
T Consensus       251 --------------------------------------~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag  292 (550)
T KOG4224|consen  251 --------------------------------------KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAG  292 (550)
T ss_pred             --------------------------------------chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcC
Confidence                                                  034556667777888899999999999999999999999999


Q ss_pred             cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccc
Q 003008          464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSK  543 (858)
Q Consensus       464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  543 (858)
                      ++|.|+.||+++.-......+.++.|++-++-+...+.++|.+.+|+.+|.. .+++++|.+|..+|+||+..  ...++
T Consensus       293 ~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~-~dnEeiqchAvstLrnLAas--se~n~  369 (550)
T KOG4224|consen  293 SLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRA-GDNEEIQCHAVSTLRNLAAS--SEHNV  369 (550)
T ss_pred             CchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhc-CCchhhhhhHHHHHHHHhhh--hhhhh
Confidence            9999999999988777888899999999999999999999999999999984 44578999999999999973  34566


Q ss_pred             cccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008          544 FYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID  622 (858)
Q Consensus       544 ~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~  622 (858)
                      ..|.++|+++.++.++.+...+++.... |+..|+..+..+ ..+.+.|.+|.|+..+.+.+.+++-.++.+|.|++.+.
T Consensus       370 ~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k-~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v  448 (550)
T KOG4224|consen  370 SVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK-EALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV  448 (550)
T ss_pred             HHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH-HHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence            7899999999999999998888888777 888888777777 99999999999999999999999999999999998766


Q ss_pred             cchHHH
Q 003008          623 PSMDTI  628 (858)
Q Consensus       623 ~~~~~~  628 (858)
                      ++-..+
T Consensus       449 ~~Yarv  454 (550)
T KOG4224|consen  449 EHYARV  454 (550)
T ss_pred             HHHHHH
Confidence            655444

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-30  Score=281.49  Aligned_cols=381  Identities=22%  Similarity=0.279  Sum_probs=308.2

Q ss_pred             CCcccccCCCcccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHH
Q 003008           87 VDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAA  166 (858)
Q Consensus        87 ~~~~~~~~~~~~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a  166 (858)
                      |+++...      ..|.+|.||..|+...++.+|..|+|+|.|+|+++..+.+.++ +.|++|.++.++.+++..++++|
T Consensus       100 ppi~~vi------~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv-~agavp~fi~Ll~s~~~~v~eQa  172 (514)
T KOG0166|consen  100 PPIDEVI------QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV-DAGAVPIFIQLLSSPSADVREQA  172 (514)
T ss_pred             CCHHHHH------HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc-cCCchHHHHHHhcCCcHHHHHHH
Confidence            5555543      3699999999997466689999999999999999888754555 89999999999999999999999


Q ss_pred             HHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCH-HHHHHHHHHHHHhccCcchHHH-HHhCCCHHHHHHHHccCC
Q 003008          167 AGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTS-EVKEQSMCTLWNLSVDKKHRLK-IANTDILPLLIKSLEDEN  243 (858)
Q Consensus       167 ~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~-~~~~~a~~~L~nLs~~~~~~~~-i~~~g~i~~Lv~ll~~~~  243 (858)
                      +|+|+|++.+. .+|+.+.+.|++++|+.++...  ++ ...+.++|+|.|||.+...... -.-..++|.|..++++.|
T Consensus       173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~--~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D  250 (514)
T KOG0166|consen  173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS--DKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTD  250 (514)
T ss_pred             HHHHhccccCChHHHHHHHhhcchHHHHHHhccc--cchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC
Confidence            99999999876 6999999999999999999987  44 7889999999999987644333 234678999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCccccc
Q 003008          244 MKVKEAAGGVLANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPM  321 (858)
Q Consensus       244 ~~~~~~a~~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~L  321 (858)
                      +++...|+|+|++|+.++..+. .+++.|+++.||++|.+.+.   .++..|++++.|++. ++...+.+++.|+++. |
T Consensus       251 ~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~---~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~-l  326 (514)
T KOG0166|consen  251 EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP---KVVTPALRAIGNIVTGSDEQTQVVINSGALPV-L  326 (514)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc---ccccHHHhhccceeeccHHHHHHHHhcChHHH-H
Confidence            9999999999999998865555 77999999999999987543   366788888888877 4555566677776663 4


Q ss_pred             ccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccC
Q 003008          322 VGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESED  401 (858)
Q Consensus       322 v~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~  401 (858)
                      ..                                                                              
T Consensus       327 ~~------------------------------------------------------------------------------  328 (514)
T KOG0166|consen  327 SN------------------------------------------------------------------------------  328 (514)
T ss_pred             HH------------------------------------------------------------------------------
Confidence            33                                                                              


Q ss_pred             CCCCCCCCCcccccccccccccHHHHHHHhC-CCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHH
Q 003008          402 GRKPQSEFPIDRQLTLLPWIDGVARLVLILG-LEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAV  479 (858)
Q Consensus       402 ~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v  479 (858)
                                                  ++. ++...++.+|||++.| .+++.+..++++++|.+|.|+.+|++.+.++
T Consensus       329 ----------------------------ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~  380 (514)
T KOG0166|consen  329 ----------------------------LLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDI  380 (514)
T ss_pred             ----------------------------HhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHH
Confidence                                        222 3344588899999999 5689999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHH
Q 003008          480 RLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLD  557 (858)
Q Consensus       480 ~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~  557 (858)
                      |..|+||+.|++.  .++.-..+++.|.|+++.++|...+  ..+...+..+|.++...+......              
T Consensus       381 rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D--~~ii~v~Ld~l~nil~~~e~~~~~--------------  444 (514)
T KOG0166|consen  381 RKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD--VKIILVALDGLENILKVGEAEKNR--------------  444 (514)
T ss_pred             HHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC--hHHHHHHHHHHHHHHHHHHHhccc--------------
Confidence            9999999999987  6777889999999999999997555  555667777777776522111000              


Q ss_pred             hhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008          558 AAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP  623 (858)
Q Consensus       558 ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~  623 (858)
                                          ...... ..|.+.||+..+-.|-.+++.+|-..|..++......++
T Consensus       445 --------------------~~n~~~-~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~  489 (514)
T KOG0166|consen  445 --------------------GTNPLA-IMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEED  489 (514)
T ss_pred             --------------------cccHHH-HHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Confidence                                000111 567788999999888899999999999999988766543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.97  E-value=8.9e-31  Score=260.08  Aligned_cols=388  Identities=20%  Similarity=0.239  Sum_probs=299.3

Q ss_pred             cCCCCCcccccCCCcccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHH
Q 003008           83 QSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAA  162 (858)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~  162 (858)
                      ..+.|+++.+      .+.|.+|.|++++......-.+..|+|+|.|++++...+. +++.++|++|.++++|.+++.++
T Consensus       101 ~E~~PPIq~V------IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT-kvVvd~~AVPlfiqlL~s~~~~V  173 (526)
T COG5064         101 KETSPPIQPV------IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT-KVVVDAGAVPLFIQLLSSTEDDV  173 (526)
T ss_pred             cccCCCchhH------HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce-EEEEeCCchHHHHHHHcCchHHH
Confidence            3445666555      4699999999999524333568899999999999998875 55669999999999999999999


Q ss_pred             HHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc---hHHHHHhCCCHHHHHHH
Q 003008          163 CEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK---HRLKIANTDILPLLIKS  238 (858)
Q Consensus       163 ~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~---~~~~i~~~g~i~~Lv~l  238 (858)
                      +++++|+|+|++.+. .+|+.+.+.|++++++.++.+..-+..+.+.+.|+|.|||....   .-..+  ...+|.|.++
T Consensus       174 ~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KL  251 (526)
T COG5064         174 REQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKL  251 (526)
T ss_pred             HHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHH
Confidence            999999999999976 59999999999999999888762245889999999999996532   23333  3368999999


Q ss_pred             HccCCHHHHHHHHHHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCC
Q 003008          239 LEDENMKVKEAAGGVLANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGL  316 (858)
Q Consensus       239 l~~~~~~~~~~a~~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~  316 (858)
                      +.+.++++...|+|++..|+..+..+. ++++.|..+.||++|.+++..   ++..+++.+.|+... +...        
T Consensus       252 iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~---iqtPalR~vGNIVTG~D~QT--------  320 (526)
T COG5064         252 IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAK---IQTPALRSVGNIVTGSDDQT--------  320 (526)
T ss_pred             HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccc---ccCHHHHhhcCeeecCccce--------
Confidence            999999999999999999999876555 789999999999999876322   455555554444432 1111        


Q ss_pred             cccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhc
Q 003008          317 VPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGA  396 (858)
Q Consensus       317 v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~  396 (858)
                                                                                                      
T Consensus       321 --------------------------------------------------------------------------------  320 (526)
T COG5064         321 --------------------------------------------------------------------------------  320 (526)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCC
Q 003008          397 IESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHS  475 (858)
Q Consensus       397 ~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~  475 (858)
                                         +.+..-|+++.+..+|+++.+.++..+||++.| .+++.+..+++++.+.+|+|+++|++.
T Consensus       321 -------------------qviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a  381 (526)
T COG5064         321 -------------------QVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA  381 (526)
T ss_pred             -------------------ehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH
Confidence                               122222355556667788888899999999999 568999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhc----ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcC
Q 003008          476 SDAVRLATTHALERLSV----SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNG  551 (858)
Q Consensus       476 ~~~v~~~a~~aL~~Ls~----~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~  551 (858)
                      +-.++..|+||+.|.++    -|+.-+.++..|.|.+|-++|.-.+  ..+-+-+..++.|+...|+....         
T Consensus       382 e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d--Nkiiev~LD~~eniLk~Ge~d~~---------  450 (526)
T COG5064         382 EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD--NKIIEVALDAIENILKVGEQDRL---------  450 (526)
T ss_pred             HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC--ccchhhhHHHHHHHHhhhhHHHH---------
Confidence            99999999999999987    3677788899999999999998544  34455567777777763321110         


Q ss_pred             cHHHHHhhcCCChhHHHHHHHHHHhhccccchhhh-HhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008          552 SEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGK-VLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS  624 (858)
Q Consensus       552 i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~-i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~  624 (858)
                             ..-                 ...+.+.. +.++|++..+-.+-.+.+.++-.+|-.++.......+.
T Consensus       451 -------~~~-----------------~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~  500 (526)
T COG5064         451 -------RYG-----------------KNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA  500 (526)
T ss_pred             -------hcc-----------------CCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence                   000                 00111133 44589999999999999999999999888777654433

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.97  E-value=8.2e-31  Score=260.32  Aligned_cols=367  Identities=20%  Similarity=0.233  Sum_probs=290.1

Q ss_pred             ccccccccHHHHHHHh-CCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-
Q 003008          416 TLLPWIDGVARLVLIL-GLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-  492 (858)
Q Consensus       416 ~~l~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-  492 (858)
                      +.+...|++|.+++++ +....-.+-.|+|+|.|++ ++....+.++++|++|.+++||.+++.+|+++++|||+|++. 
T Consensus       108 q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD  187 (526)
T COG5064         108 QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD  187 (526)
T ss_pred             hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC
Confidence            5566778999999999 4555667789999999955 666666777899999999999999999999999999999999 


Q ss_pred             ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-
Q 003008          493 SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-  571 (858)
Q Consensus       493 ~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-  571 (858)
                      ++.+|..+.+.|++.+++.++.++..+..+.+.++|+|+||+. |+.+...+..+ ...+|.|.+|+.+.|+++...|+ 
T Consensus       188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR-GknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~W  265 (526)
T COG5064         188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR-GKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACW  265 (526)
T ss_pred             chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC-CCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHH
Confidence            7889999999999999999998666557888999999999998 33443332211 34689999999999999999999 


Q ss_pred             HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCC
Q 003008          572 VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDS  651 (858)
Q Consensus       572 ~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~  651 (858)
                      ++.+|+......++.+++.|..+.|+++|.+++..+|..|++.++|+..+++....++           +          
T Consensus       266 AiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqvi-----------I----------  324 (526)
T COG5064         266 AISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVI-----------I----------  324 (526)
T ss_pred             HHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehh-----------e----------
Confidence            9999998777666899999999999999999999999999999999999887766541           1          


Q ss_pred             CcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCC
Q 003008          652 DIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPD  731 (858)
Q Consensus       652 ~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~  731 (858)
                                          ..|....+..|++..+.  .+....|+..      +++..+..                 
T Consensus       325 --------------------~~G~L~a~~~lLs~~ke--~irKEaCWTi------SNITAGnt-----------------  359 (526)
T COG5064         325 --------------------NCGALKAFRSLLSSPKE--NIRKEACWTI------SNITAGNT-----------------  359 (526)
T ss_pred             --------------------ecccHHHHHHHhcChhh--hhhhhhheee------cccccCCH-----------------
Confidence                                11222233334443322  1222223221      23322222                 


Q ss_pred             CCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcC--cchhhHHHHhcCCchHHHHHhhcCChHHHHHH
Q 003008          732 QDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEG--VVDSTRAVASEGGIFPLVKLIEEGSNRAVEAG  809 (858)
Q Consensus       732 ~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a  809 (858)
                          +.++ .+.+++.+|+|+.+|.+.+..+++.||||+.|.++++  .+|..+++++.|.|.||+.+|.-.+.++-+.+
T Consensus       360 ----eqiq-avid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~  434 (526)
T COG5064         360 ----EQIQ-AVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA  434 (526)
T ss_pred             ----HHHH-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence                2222 2448889999999999999999999999999998864  35788899999999999999998888888888


Q ss_pred             HHHHHhhhcCcc-----------chHHHH-HcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008          810 LAILYNLSMDSE-----------NHSAII-AAGAVPALRRIVLSQRPQW-TRALRLLRN  855 (858)
Q Consensus       810 ~~aL~nL~~~~~-----------~~~~i~-~~g~v~~L~~ll~~~~~~~-~~al~~l~~  855 (858)
                      +.++.|+....+           ....++ ++|.+..+..+..+.+... ++|+..+.+
T Consensus       435 LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~  493 (526)
T COG5064         435 LDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEK  493 (526)
T ss_pred             HHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHH
Confidence            999988864322           123444 5999999999999999988 999987754

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.5e-30  Score=274.99  Aligned_cols=364  Identities=19%  Similarity=0.216  Sum_probs=292.2

Q ss_pred             cccccHHHHHHHhC-CCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-Chh
Q 003008          419 PWIDGVARLVLILG-LEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRG  495 (858)
Q Consensus       419 ~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~  495 (858)
                      .+.|.++.+|..|. ..++.++..|+|+|.| .+++.+..+.++++|+++.++.|+.+++.+|+++|+|||+|++. ++.
T Consensus       106 i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~  185 (514)
T KOG0166|consen  106 IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD  185 (514)
T ss_pred             HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence            33479999999997 4569999999999999 55788889999999999999999999999999999999999999 799


Q ss_pred             HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHH
Q 003008          496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIE  574 (858)
Q Consensus       496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~  574 (858)
                      +|..+.+.|++++|+.++..+. .....+.++|+|+|||... ++.... -.-...+|.|..++.+.|+++...++ ++.
T Consensus       186 ~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsNlcrgk-~P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls  262 (514)
T KOG0166|consen  186 CRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSNLCRGK-NPSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALS  262 (514)
T ss_pred             HHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHHHHcCC-CCCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            9999999999999999998443 3578889999999999843 222211 11235688999999999999999999 999


Q ss_pred             HhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcC
Q 003008          575 AAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIE  654 (858)
Q Consensus       575 ~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~  654 (858)
                      +|.......++.+++.|.+|.|+++|.+....++..|+++++|++.+++.....+-                        
T Consensus       263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi------------------------  318 (514)
T KOG0166|consen  263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI------------------------  318 (514)
T ss_pred             HHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH------------------------
Confidence            99977766668999999999999999999999999999999999998887766521                        


Q ss_pred             CCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCC
Q 003008          655 GRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDF  734 (858)
Q Consensus       655 ~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  734 (858)
                                       ..+..+.+..++.-.. ...+....|+..      +++..+..                    
T Consensus       319 -----------------~~~~L~~l~~ll~~s~-~~~ikkEAcW~i------SNItAG~~--------------------  354 (514)
T KOG0166|consen  319 -----------------NSGALPVLSNLLSSSP-KESIKKEACWTI------SNITAGNQ--------------------  354 (514)
T ss_pred             -----------------hcChHHHHHHHhccCc-chhHHHHHHHHH------HHhhcCCH--------------------
Confidence                             1112223333332100 011222233322      22222222                    


Q ss_pred             CccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHH
Q 003008          735 ENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILY  814 (858)
Q Consensus       735 ~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~  814 (858)
                       ..++ .+.++|.+|.|+++|.+++..+|++|+||++|++.++..++..++++.|.|++++.+|.-.+.+....++.+|.
T Consensus       355 -~qiq-aVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~  432 (514)
T KOG0166|consen  355 -EQIQ-AVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLE  432 (514)
T ss_pred             -HHHH-HHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHH
Confidence             2222 24588999999999999999999999999999999999889999999999999999998888889899999999


Q ss_pred             hhhcCc---------cchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008          815 NLSMDS---------ENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRN  855 (858)
Q Consensus       815 nL~~~~---------~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~  855 (858)
                      ||....         .....|.++|.+..+..|..+++.+. ++|+..+.+
T Consensus       433 nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~  483 (514)
T KOG0166|consen  433 NILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDT  483 (514)
T ss_pred             HHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHH
Confidence            996432         23346889999999999999999888 999988764

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=7.8e-24  Score=242.16  Aligned_cols=394  Identities=19%  Similarity=0.270  Sum_probs=314.9

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 003008          106 LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE  185 (858)
Q Consensus       106 ~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~  185 (858)
                      ++-.++. ..+ .....+...|.|++.+....  ..|.+.|+++.|+++|.+++.+....++..|.+||...+|+..|.+
T Consensus       254 k~~~l~~-kQe-qLlrv~~~lLlNLAed~~ve--~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~  329 (708)
T PF05804_consen  254 KLQTLIR-KQE-QLLRVAFYLLLNLAEDPRVE--LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE  329 (708)
T ss_pred             HHHHHHH-HHH-HHHHHHHHHHHHHhcChHHH--HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3444444 333 34446778899999988764  4455899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchH
Q 003008          186 CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHN  265 (858)
Q Consensus       186 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~  265 (858)
                      .|+|++|++++.++  +...+..++++|+|||++++.|..+++.|++|.|+.+|.++  ..+..++.+|++|+.++++|.
T Consensus       330 ~giV~kL~kLl~s~--~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~  405 (708)
T PF05804_consen  330 SGIVEKLLKLLPSE--NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARS  405 (708)
T ss_pred             cCCHHHHHHHhcCC--CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHH
Confidence            99999999999998  89999999999999999999999999999999999999865  466789999999999999999


Q ss_pred             HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcch
Q 003008          266 ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTE  345 (858)
Q Consensus       266 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~  345 (858)
                      .+...+++|.+++++-.+++  +.+...+...+.||+.++.|.+.+++.|+++. |++.+                    
T Consensus       406 ~f~~TdcIp~L~~~Ll~~~~--~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~-L~~ra--------------------  462 (708)
T PF05804_consen  406 MFAYTDCIPQLMQMLLENSE--EEVQLELIALLINLALNKRNAQLMCEGNGLQS-LMKRA--------------------  462 (708)
T ss_pred             HHhhcchHHHHHHHHHhCCC--ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHH-HHHHH--------------------
Confidence            99999999999997655432  22555778899999999999999999999994 88852                    


Q ss_pred             hhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHH
Q 003008          346 IERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVA  425 (858)
Q Consensus       346 ~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~  425 (858)
                       ++..+    .-....++|++.++..-   +..+                                         .+.+.
T Consensus       463 -~~~~D----~lLlKlIRNiS~h~~~~---k~~f-----------------------------------------~~~i~  493 (708)
T PF05804_consen  463 -LKTRD----PLLLKLIRNISQHDGPL---KELF-----------------------------------------VDFIG  493 (708)
T ss_pred             -Hhccc----HHHHHHHHHHHhcCchH---HHHH-----------------------------------------HHHHH
Confidence             12111    11345678887765210   0000                                         12455


Q ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCC--cHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008          426 RLVLILGL-EDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHS--SDAVRLATTHALERLSVSRGVCQIME  501 (858)
Q Consensus       426 ~Lv~lL~~-~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~l~  501 (858)
                      .|+..+.. ++++....+.++|+|+.. +.+....+.+.+.+|.|.++|..+  .+++...++..++.++.++.+...+.
T Consensus       494 ~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~  573 (708)
T PF05804_consen  494 DLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLA  573 (708)
T ss_pred             HHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            56666654 467889999999999774 445555566789999999999765  37899999999999999999999999


Q ss_pred             HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhcccc
Q 003008          502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETT  581 (858)
Q Consensus       502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~  581 (858)
                      +.|.++.|+.+|+...+|+++.-....++..+..                                           +..
T Consensus       574 ~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~-------------------------------------------h~~  610 (708)
T PF05804_consen  574 KSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF-------------------------------------------HEE  610 (708)
T ss_pred             hCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc-------------------------------------------ChH
Confidence            9999999999999777677666666665555554                                           444


Q ss_pred             chhhhH-hhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008          582 TSYGKV-LDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP  623 (858)
Q Consensus       582 ~~~~~i-~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~  623 (858)
                      +| ..+ .+.+.+..|+.++.+.|++|++.|-.+|.-++..++
T Consensus       611 tr-~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  611 TR-EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             HH-HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence            55 444 346777889999999999999999999888876554

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.91  E-value=1.6e-21  Score=223.28  Aligned_cols=346  Identities=18%  Similarity=0.187  Sum_probs=279.6

Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc
Q 003008          161 AACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE  240 (858)
Q Consensus       161 ~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~  240 (858)
                      .....+...|.||+.+..+...+...|+|+.|+++|.+.  +.++...+++.|.+||..++||..+.+.|++++|++++.
T Consensus       264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~--n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~  341 (708)
T PF05804_consen  264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE--NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP  341 (708)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence            344467888999999999999999999999999999988  999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccc
Q 003008          241 DENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVP  320 (858)
Q Consensus       241 ~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~  320 (858)
                      +++.+++..++++|.||+.+++.|..+++.|++|.|+.+|..++     .+..+..+|+|+|.++++|..+...++++. 
T Consensus       342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~-----~~~val~iLy~LS~dd~~r~~f~~TdcIp~-  415 (708)
T PF05804_consen  342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN-----FREVALKILYNLSMDDEARSMFAYTDCIPQ-  415 (708)
T ss_pred             CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc-----hHHHHHHHHHHhccCHhhHHHHhhcchHHH-
Confidence            99999999999999999999999999999999999999997532     566899999999999998888877787773 


Q ss_pred             cccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhccccc
Q 003008          321 MVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESE  400 (858)
Q Consensus       321 Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~  400 (858)
                      +++++                                                                           
T Consensus       416 L~~~L---------------------------------------------------------------------------  420 (708)
T PF05804_consen  416 LMQML---------------------------------------------------------------------------  420 (708)
T ss_pred             HHHHH---------------------------------------------------------------------------
Confidence            66542                                                                           


Q ss_pred             CCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHH
Q 003008          401 DGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVR  480 (858)
Q Consensus       401 ~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~  480 (858)
                                                    +..+++.+...+...+.|++.++++.+.+.+.|+++.|+...-...+.+ 
T Consensus       421 ------------------------------l~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l-  469 (708)
T PF05804_consen  421 ------------------------------LENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL-  469 (708)
T ss_pred             ------------------------------HhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH-
Confidence                                          0111222333456677788888888888888899999998764433322 


Q ss_pred             HHHHHHHHHhhcCh-hHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhh
Q 003008          481 LATTHALERLSVSR-GVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAA  559 (858)
Q Consensus       481 ~~a~~aL~~Ls~~~-~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll  559 (858)
                        ....+.|++.++ ..+..+.  +.|..|+.++...+ +++....+.++|+||..++.  .....+.+.+.+|++.++|
T Consensus       470 --LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~-~ee~~vE~LGiLaNL~~~~l--d~~~ll~~~~llp~L~~~L  542 (708)
T PF05804_consen  470 --LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGD-SEEFVVECLGILANLTIPDL--DWAQLLQEYNLLPWLKDLL  542 (708)
T ss_pred             --HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCC-cHHHHHHHHHHHHhcccCCc--CHHHHHHhCCHHHHHHHHh
Confidence              335899999965 5566554  47888889887544 67888999999999987543  3333344568899999999


Q ss_pred             cCC--ChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcC--CCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008          560 ESL--DPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKT--SYPDLQRKAASILEFITIIDPSMDTI  628 (858)
Q Consensus       560 ~s~--d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~~~~  628 (858)
                      ...  ++++...++ .+..++.+.... ..+.+.|.++.|+.+|++  +|.++..+.+.+++++..+++.+..+
T Consensus       543 ~~g~~~dDl~LE~Vi~~gtla~d~~~A-~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~l  615 (708)
T PF05804_consen  543 KPGASEDDLLLEVVILLGTLASDPECA-PLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVL  615 (708)
T ss_pred             CCCCCChHHHHHHHHHHHHHHCCHHHH-HHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHH
Confidence            753  457888888 778888888877 888899999999999975  56678888888888877766665544

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.86  E-value=1.4e-20  Score=215.96  Aligned_cols=350  Identities=19%  Similarity=0.237  Sum_probs=258.7

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC---CHHHHHHHHHHHHHhhcCc-h---
Q 003008          106 LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE---SSAACEAAAGLLRSISSIN-V---  178 (858)
Q Consensus       106 ~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~---~~~~~~~a~~aL~nLs~~~-~---  178 (858)
                      .++.+|. +.|   ++...+.++.++.+.+.|  .+|+..|+++.|+++|.-.   +.+.+..|-.+|+||.++. +   
T Consensus       201 sllsml~-t~D---~ee~ar~fLemSss~esC--aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr  274 (2195)
T KOG2122|consen  201 SLLSMLG-TDD---EEEMARTFLEMSSSPESC--AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR  274 (2195)
T ss_pred             HHhhhcc-cCC---HHHHHHHHHHhccCchhh--HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh
Confidence            5667776 656   777788999999999998  5788899999999999654   5678888999999997643 3   


Q ss_pred             hHHHHHhcCcHHHHHH-------HhcCC-C----CCHHHHH-HHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC---
Q 003008          179 YRDLVAECGAIEEITG-------LLTRP-S----LTSEVKE-QSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE---  242 (858)
Q Consensus       179 ~~~~i~~~g~i~~Lv~-------lL~~~-~----~~~~~~~-~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~---  242 (858)
                      .|+.+.-..++..+..       ++... +    ...+-+. .|+.+|..+++++++|..+.+.|++.++.+|+...   
T Consensus       275 ~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~m  354 (2195)
T KOG2122|consen  275 GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEM  354 (2195)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3444433333332222       22221 1    1122333 78899999999999999999999999999987532   


Q ss_pred             ---------CHHHHHHHHHHHHHHcCCcC-chHHH-HhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC--hhhHH
Q 003008          243 ---------NMKVKEAAGGVLANLALSKS-NHNIL-VEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD--DYYRI  309 (858)
Q Consensus       243 ---------~~~~~~~a~~~L~nL~~~~~-~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~--~~~~~  309 (858)
                               ...++.++..+|.||++++. +|..+ ...|+++.+|..|.+.+   ..+.+..+.+|.||++.  ...++
T Consensus       355 hgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p---eeL~QV~AsvLRNLSWRAD~nmKk  431 (2195)
T KOG2122|consen  355 HGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP---EELLQVYASVLRNLSWRADSNMKK  431 (2195)
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh---HHHHHHHHHHHHhccccccccHHH
Confidence                     23689999999999999864 55555 56799999999998764   34888999999999994  45567


Q ss_pred             HHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCcc---c-hHHHHhhhhhh
Q 003008          310 LIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNAN---I-DEAKMNAMVGR  385 (858)
Q Consensus       310 ~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~---i-~~~~~~~li~~  385 (858)
                      .+.+.|-+.. |+..                     .++..++.+++..+.|||||+.+....+   + ..+++.-|++ 
T Consensus       432 vLrE~GsVta-La~~---------------------al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg-  488 (2195)
T KOG2122|consen  432 VLRETGSVTA-LAAC---------------------ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVG-  488 (2195)
T ss_pred             HHHhhhhHHH-HHHH---------------------HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHh-
Confidence            7778898885 7775                     4566667899999999999987764333   1 2233333433 


Q ss_pred             hhhhHHHHhhcccccCCCCCC-------------CCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-C
Q 003008          386 SRQHFLVRIGAIESEDGRKPQ-------------SEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-I  451 (858)
Q Consensus       386 ~~~~~L~~~~~~~~~~~~~~~-------------l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~  451 (858)
                              .-+++-....++.             +....++.-+++...+++..|++.|++.+-.++.++|++|||++ .
T Consensus       489 --------~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR  560 (2195)
T KOG2122|consen  489 --------TLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR  560 (2195)
T ss_pred             --------hccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC
Confidence                    1111101111111             11122222145566679999999999999999999999999965 8


Q ss_pred             ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChh
Q 003008          452 NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRG  495 (858)
Q Consensus       452 ~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~  495 (858)
                      +++.++.+++.|+|+.|.+|+++++..+.+.++.+|.||..++.
T Consensus       561 ~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  561 SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999987653

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.83  E-value=1.2e-18  Score=194.49  Aligned_cols=425  Identities=20%  Similarity=0.214  Sum_probs=305.2

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc---
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN---  177 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~---  177 (858)
                      .=-+|..+.+|. +.++.+|.+|...+..++..+...+ ..+++.|+|+.|+.+|.+.+.+++.+|+++|+||....   
T Consensus       232 d~~lpe~i~mL~-~q~~~~qsnaaaylQHlcfgd~~ik-~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~  309 (717)
T KOG1048|consen  232 DPTLPEVISMLM-SQDPSVQSNAAAYLQHLCFGDNKIK-SRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD  309 (717)
T ss_pred             ccccHHHHHHHh-ccChhhhHHHHHHHHHHHhhhHHHH-HHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc
Confidence            345788999998 8888999999999999999877654 56678999999999999999999999999999998743   


Q ss_pred             hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC--------------C
Q 003008          178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE--------------N  243 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--------------~  243 (858)
                      +|+-.|.+.++|+.++++|+... |.++++..+.+||||+.+|..|..++... +..|..-+-.+              +
T Consensus       310 ~NKlai~~~~Gv~~l~~~Lr~t~-D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~  387 (717)
T KOG1048|consen  310 SNKLAIKELNGVPTLVRLLRHTQ-DDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAED  387 (717)
T ss_pred             ccchhhhhcCChHHHHHHHHhhc-chHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCccccccc
Confidence            48999999999999999999742 99999999999999999988888887653 66666554321              2


Q ss_pred             HHHHHHHHHHHHHHcC-CcCchHHHHh-CCCHHHHHHHHccC---CCCCHHHHHHHHHHHHHHhcC------hhhHHHHH
Q 003008          244 MKVKEAAGGVLANLAL-SKSNHNILVE-AGVIPKLAMLLKAN---VEGSKVIRKEARNALIELAKD------DYYRILII  312 (858)
Q Consensus       244 ~~~~~~a~~~L~nL~~-~~~~~~~i~~-~g~i~~Lv~ll~~~---~~~~~~~~~~a~~aL~nl~~~------~~~~~~i~  312 (858)
                      .++..+++++|.|++. ..+.|..+.+ .|.|..|+..+++.   +..+....++++.+|.||+..      +..+....
T Consensus       388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~  467 (717)
T KOG1048|consen  388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA  467 (717)
T ss_pred             ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence            4678899999999988 6788888876 47799999988731   111223568999999999973      12222222


Q ss_pred             HcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCC-CCCccchHHHHhhhhhhhhhhHH
Q 003008          313 EEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVS-DKNANIDEAKMNAMVGRSRQHFL  391 (858)
Q Consensus       313 ~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~-~~~~~i~~~~~~~li~~~~~~~L  391 (858)
                      +.+...  .++-             +..+.|                 ++..-... +.+                    
T Consensus       468 ~~~~~~--~~~~-------------~~~~~g-----------------cf~~k~~k~~~~--------------------  495 (717)
T KOG1048|consen  468 NIARLP--GVGP-------------PAESVG-----------------CFGFKKRKSDDN--------------------  495 (717)
T ss_pred             cccccc--cCCC-------------cccccc-----------------cccchhhhchhc--------------------
Confidence            222222  1110             000000                 00000000 000                    


Q ss_pred             HHhhcccccCCCCCCCCCCcccccccccccc-cHHHHHHHh-CCCCHHHHHHHHHHHHHhcC-----ChhhHHHH-HHcC
Q 003008          392 VRIGAIESEDGRKPQSEFPIDRQLTLLPWID-GVARLVLIL-GLEDERAIARAAESIADISI-----NEHMRMLF-KEAG  463 (858)
Q Consensus       392 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~~-----~~~~~~~l-~~~g  463 (858)
                        .+..     -..+-...+..  ..+.|.. ++..-+.|| .+.+..+.+.++++|.|++.     ....+..+ .++.
T Consensus       496 --~~~~-----~~pe~~~~pkG--~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kek  566 (717)
T KOG1048|consen  496 --CDDL-----PIPERATAPKG--SEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEK  566 (717)
T ss_pred             --cccc-----CCcccccCCCC--ceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhcc
Confidence              0000     00000001111  2233444 566544444 46688999999999999542     33455556 6899


Q ss_pred             cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCc----cHHHHHHHHHHHHHhcCCCcc
Q 003008          464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI----SESLMEKTLDILGRILDPSKE  539 (858)
Q Consensus       464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~----~~~~~~~a~~~L~~l~~~~~~  539 (858)
                      +.++|+.||+.+++.|.+.++.+|.||+.+..++..|. .++++.|+..|..+..    ++++...++.+|.|+...  +
T Consensus       567 gl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~--~  643 (717)
T KOG1048|consen  567 GLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK--N  643 (717)
T ss_pred             CccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH--h
Confidence            99999999999999999999999999999999999988 6799999999975432    467778888999999852  4


Q ss_pred             cccccccccCcCcHHHHHhhcCC-ChhHHHHHH-HHHHhhccccchhhhHhhccchh
Q 003008          540 MKSKFYDIPVNGSEKGLDAAESL-DPSIELTGN-VIEAAVSETTTSYGKVLDSVFIG  594 (858)
Q Consensus       540 ~~~~~~i~~~~~i~~Li~ll~s~-d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~  594 (858)
                      ..+...+.+.+|++.|+.+..+. ++.+.+.+. .+..|-+..+.+ ......|.-+
T Consensus       644 ~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh-~~~kk~g~~q  699 (717)
T KOG1048|consen  644 VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH-FKLKKKGFKQ  699 (717)
T ss_pred             HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh-hhHhhhhhHH
Confidence            55556678889999999998874 456777777 888887777766 5555555543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.76  E-value=4.4e-17  Score=182.07  Aligned_cols=421  Identities=16%  Similarity=0.168  Sum_probs=291.1

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc---Ccch
Q 003008          147 CINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV---DKKH  222 (858)
Q Consensus       147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~---~~~~  222 (858)
                      -+|..+.+|.+.++.++-+|+.-|..++..+ ..+..+.+.|+|+.||.++.+.  +.++++.|+++|.||.+   +++|
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhcccCCccc
Confidence            3677889999999999999999999999976 5888999999999999999999  99999999999999984   3468


Q ss_pred             HHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccC-C----CC------CHHH
Q 003008          223 RLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN-V----EG------SKVI  290 (858)
Q Consensus       223 ~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~-~----~~------~~~~  290 (858)
                      +..|.+.++|+.++++|+. .|.++++....+|+||++++..+..++. .+++.|-..+-.. +    +.      ...+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v  390 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTV  390 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCccccccccee
Confidence            9999999999999999997 5899999999999999999888887766 3444444422111 1    11      1235


Q ss_pred             HHHHHHHHHHHhc-ChhhHHHHHHc-CCcccccccccccccCCccCCCCCCCCCcchhhcc--cCCchhhHHHHHHhccC
Q 003008          291 RKEARNALIELAK-DDYYRILIIEE-GLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERT--SQGPSKFGANELLLGLN  366 (858)
Q Consensus       291 ~~~a~~aL~nl~~-~~~~~~~i~~~-g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~a~~aL~nL~  366 (858)
                      -.++..+|.|++. ..+.|+++.++ |.|.. |+-.+.  .                .+..  .+.....+|+..|+||+
T Consensus       391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIda-L~~~iq--~----------------~i~~~~~d~K~VENcvCilRNLS  451 (717)
T KOG1048|consen  391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDA-LLFSIQ--T----------------AIQKSDLDSKSVENCVCILRNLS  451 (717)
T ss_pred             eehhhhhhccccchhHHHHHHHhhccchHHH-HHHHHH--H----------------HHHhccccchhHHHHHHHHhhcC
Confidence            5689999999999 78899999996 55664 665421  0                1111  12356777999999997


Q ss_pred             CCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHH
Q 003008          367 VSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESI  446 (858)
Q Consensus       367 ~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL  446 (858)
                      ..-. .++....-         +.+...+......       . +.             .-+..+.....+ ....+..+
T Consensus       452 Yrl~-~Evp~~~~---------~~~~~~~~~~~~~-------~-~~-------------~~~gcf~~k~~k-~~~~~~~~  499 (717)
T KOG1048|consen  452 YRLE-AEVPPKYR---------QVLANIARLPGVG-------P-PA-------------ESVGCFGFKKRK-SDDNCDDL  499 (717)
T ss_pred             chhh-hhcCHhhh---------hHhhcccccccCC-------C-cc-------------cccccccchhhh-chhccccc
Confidence            5432 11111111         0111111000000       0 00             000000000000 00000000


Q ss_pred             HH--hcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhc-C----hhHHHHH-HHcCChHHHHHhhcCCC
Q 003008          447 AD--ISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSV-S----RGVCQIM-EAEGVVHPLVNTLKNLD  517 (858)
Q Consensus       447 ~~--l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~-~----~~~~~~l-~~~g~i~~Li~lL~~~~  517 (858)
                      --  .+..+..-.-++...+|.+-..||. +.++...++++.||.||+. .    ...+..+ .++.+++.|+.+|+..+
T Consensus       500 ~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~  579 (717)
T KOG1048|consen  500 PIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDD  579 (717)
T ss_pred             CCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCC
Confidence            00  1112222222444556666555554 5568999999999999987 2    2335544 78899999999999544


Q ss_pred             ccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCC------hhHHHHHH-HHHHhhc-cccchhhhHhh
Q 003008          518 ISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLD------PSIELTGN-VIEAAVS-ETTTSYGKVLD  589 (858)
Q Consensus       518 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d------~~v~~~a~-~l~~L~~-~~~~~~~~i~~  589 (858)
                        ..+.+.++.+|.||+.   +..++..|. ..+++.|++.|-...      .++....| .+.+++. +..+. ..+.+
T Consensus       580 --~~vv~s~a~~LrNls~---d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nA-kdl~~  652 (717)
T KOG1048|consen  580 --SDVVRSAAGALRNLSR---DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNA-KDLLE  652 (717)
T ss_pred             --chHHHHHHHHHhhhcc---Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHH-HHHHh
Confidence              7788899999999999   888887666 889999999986543      35666666 8888884 44555 88999


Q ss_pred             ccchhHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008          590 SVFIGRMIGIMKT-SYPDLQRKAASILEFITIIDPSMDTI  628 (858)
Q Consensus       590 ~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~  628 (858)
                      .++++.|+-+.++ .++.+.+.|...|..|-...+.+..+
T Consensus       653 ~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~  692 (717)
T KOG1048|consen  653 IKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKL  692 (717)
T ss_pred             ccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            9999999999876 45578889999999998777666655

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=1.3e-15  Score=152.52  Aligned_cols=361  Identities=14%  Similarity=0.133  Sum_probs=272.0

Q ss_pred             HHHHHHHHHHhccCc--c--hHHHHHhCCCHHHHHHHHc---cCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHH
Q 003008          206 KEQSMCTLWNLSVDK--K--HRLKIANTDILPLLIKSLE---DENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAM  278 (858)
Q Consensus       206 ~~~a~~~L~nLs~~~--~--~~~~i~~~g~i~~Lv~ll~---~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~  278 (858)
                      .+.....|.+|+...  +  +|..-.+.|..+.++.++.   +++..+...++.+|..++   ..+..+.++.++..++.
T Consensus        76 ~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt---~~qpdl~da~g~~vvv~  152 (461)
T KOG4199|consen   76 LEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLT---HKQPDLFDAEAMAVVLK  152 (461)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh---cCCcchhccccHHHHHH
Confidence            344567777777311  1  1222237788888777754   346667777777777665   44557888899999999


Q ss_pred             HHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhH
Q 003008          279 LLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFG  357 (858)
Q Consensus       279 ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  357 (858)
                      +|....++ ..+.......+..-|. ++.||+.+++.++.+ .+.+.                     +.+.++..+.++
T Consensus       153 lL~~~~~~-~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~-Li~~~---------------------l~~~gk~~~VRe  209 (461)
T KOG4199|consen  153 LLALKVES-EEVTLLTLQWLQKACIMHEVNRQLFMELKILE-LILQV---------------------LNREGKTRTVRE  209 (461)
T ss_pred             HHhcccch-HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH-HHHHH---------------------HcccCccHHHHH
Confidence            98765443 3355666677777776 899999999999999 36554                     345555568888


Q ss_pred             HHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCC-CCH
Q 003008          358 ANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGL-EDE  436 (858)
Q Consensus       358 a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~  436 (858)
                      ..|+++.+..+++.+.....+-                                 ..-+.+..++++..|++.+.- -++
T Consensus       210 l~~a~r~l~~dDDiRV~fg~ah---------------------------------~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  210 LYDAIRALLTDDDIRVVFGQAH---------------------------------GHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HHHHHHHhcCCCceeeecchhh---------------------------------HHHHHHHHhhhHHHHHHHHHccCCc
Confidence            9999999987775433111100                                 001334456678888888865 468


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCc-HHHH---HHHHHHHHHhhcChhHHHHHHHcCChHHHHHh
Q 003008          437 RAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSS-DAVR---LATTHALERLSVSRGVCQIMEAEGVVHPLVNT  512 (858)
Q Consensus       437 ~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~-~~v~---~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~l  512 (858)
                      .+....+.+|..++-.++.++.+.+.||+..|+.++.+.+ ..+|   +.++..|..|+.+++++..|++.|+.+.++.+
T Consensus       257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l  336 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITL  336 (461)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHH
Confidence            8999999999999999999999999999999999998744 4444   67888999999999999999999999999998


Q ss_pred             hcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC-C-ChhHHHHHH-HHHHhhccccchhhhHhh
Q 003008          513 LKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES-L-DPSIELTGN-VIEAAVSETTTSYGKVLD  589 (858)
Q Consensus       513 L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s-~-d~~v~~~a~-~l~~L~~~~~~~~~~i~~  589 (858)
                      +....+++.+.+.++.+++-++..+++..  ..+++.|+-...+..|+. | ...+++++| .|+|++...... ..++=
T Consensus       337 ~~~h~~~p~Vi~~~~a~i~~l~LR~pdhs--a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~-~~~~l  413 (461)
T KOG4199|consen  337 ALRHSDDPLVIQEVMAIISILCLRSPDHS--AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN-RTILL  413 (461)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHhcCcchH--HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc-cchHH
Confidence            87778889999999999999987444443  457788888889999885 3 368999999 999998777666 45555


Q ss_pred             ccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008          590 SVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTI  628 (858)
Q Consensus       590 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~  628 (858)
                      ..|++.|+.--.+.++.....+-.+|+.|-++...++.-
T Consensus       414 ~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~w  452 (461)
T KOG4199|consen  414 ANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEW  452 (461)
T ss_pred             hccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHh
Confidence            566799998888888888888889999987776665543

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=2.1e-14  Score=149.84  Aligned_cols=382  Identities=14%  Similarity=0.200  Sum_probs=284.8

Q ss_pred             HHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCC
Q 003008          121 EQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPS  200 (858)
Q Consensus       121 ~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~  200 (858)
                      .-|+..|.|++.+...  +.-|+..+.+..|++.|..++.+........|..|+...+|+..+.+.|.|..|+++.... 
T Consensus       281 rva~ylLlNlAed~~~--ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~-  357 (791)
T KOG1222|consen  281 RVAVYLLLNLAEDISV--ELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ-  357 (791)
T ss_pred             HHHHHHHHHHhhhhhH--HHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC-
Confidence            3467788999987653  4667788999999999999998888888999999999999999999999999999999998 


Q ss_pred             CCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHH
Q 003008          201 LTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL  280 (858)
Q Consensus       201 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll  280 (858)
                       +++.+...+..|.|||++...|.+++..|.+|.|+.++.++.  -...|+..|..++.++..+..+....+|+.+.+.+
T Consensus       358 -h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v  434 (791)
T KOG1222|consen  358 -HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV  434 (791)
T ss_pred             -CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence             999999999999999999999999999999999999998764  33568889999999999999999889999999965


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHH
Q 003008          281 KANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANE  360 (858)
Q Consensus       281 ~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~  360 (858)
                      -++... + +.......-.|+|.+..|.+.+++..++.. |++.. +++.++                     .   ...
T Consensus       435 ~~~~~~-~-vdl~lia~ciNl~lnkRNaQlvceGqgL~~-LM~ra-~k~~D~---------------------l---LmK  486 (791)
T KOG1222|consen  435 LSGTGS-E-VDLALIALCINLCLNKRNAQLVCEGQGLDL-LMERA-IKSRDL---------------------L---LMK  486 (791)
T ss_pred             HhcCCc-e-ecHHHHHHHHHHHhccccceEEecCcchHH-HHHHH-hcccch---------------------H---HHH
Confidence            444332 1 222333344799999999999999888884 77742 111111                     0   233


Q ss_pred             HHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhC-CCCHHHH
Q 003008          361 LLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILG-LEDERAI  439 (858)
Q Consensus       361 aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~  439 (858)
                      .++|++.++.       +.+       -+|+-.                              +..|...++ .+++...
T Consensus       487 ~vRniSqHeg-------~tq-------n~Fidy------------------------------vgdLa~i~~nd~~E~F~  522 (791)
T KOG1222|consen  487 VVRNISQHEG-------ATQ-------NMFIDY------------------------------VGDLAGIAKNDNSESFG  522 (791)
T ss_pred             HHHHhhhccc-------hHH-------HHHHHH------------------------------HHHHHHHhhcCchHHHH
Confidence            4677776652       111       111211                              222333333 4556677


Q ss_pred             HHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCC--cHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCC
Q 003008          440 ARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHS--SDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNL  516 (858)
Q Consensus       440 ~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~  516 (858)
                      ..|.++|+|+.- .-+..+.+.+...||.+-..|..+  ..+++...+.+++.++....+...+..+|.|+.++.+|+..
T Consensus       523 ~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~  602 (791)
T KOG1222|consen  523 LECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQAC  602 (791)
T ss_pred             HHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhh
Confidence            899999999775 445566667899999999988754  37788889999999999999999999999999999999865


Q ss_pred             CccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHh-hccchhH
Q 003008          517 DISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVL-DSVFIGR  595 (858)
Q Consensus       517 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~-~~g~i~~  595 (858)
                      .++++...........+.                                           .+..+| ..|+ +...-..
T Consensus       603 QeDDEfV~QiiyVF~Q~l-------------------------------------------~He~tr-~~miket~~~Ay  638 (791)
T KOG1222|consen  603 QEDDEFVVQIIYVFLQFL-------------------------------------------KHELTR-RLMIKETALGAY  638 (791)
T ss_pred             cccchHHHHHHHHHHHHH-------------------------------------------HHHHHH-HHHHhhccchHH
Confidence            555544332222222221                                           122233 3333 3344457


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008          596 MIGIMKTSYPDLQRKAASILEFITIIDPS  624 (858)
Q Consensus       596 L~~lL~s~~~~v~~~a~~~L~~l~~~~~~  624 (858)
                      |+.++.+.+.+++.-|-.+|--++..+..
T Consensus       639 lIDLMHDkN~eiRkVCDn~LdIiae~d~E  667 (791)
T KOG1222|consen  639 LIDLMHDKNAEIRKVCDNALDIIAEHDKE  667 (791)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence            88999999999999888888888765543

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.61  E-value=8.1e-14  Score=144.05  Aligned_cols=438  Identities=16%  Similarity=0.074  Sum_probs=289.8

Q ss_pred             HHHHHHHHHHHHcccCCcccHHHHHH---hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHH
Q 003008          118 LDREQAVEALWKYSLGGKKCIDYIMQ---FSGCINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEIT  193 (858)
Q Consensus       118 ~~~~~a~~~L~~la~~~~~~~~~ii~---~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv  193 (858)
                      .++.....++...+.++.. +..+++   +++.+..|.+...+++.++.+++.++|+|++..+ ++|.++.+.||-..++
T Consensus        57 tv~~~qssC~A~~sk~ev~-r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivi  135 (604)
T KOG4500|consen   57 TVYLFQSSCLADRSKNEVE-RSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVI  135 (604)
T ss_pred             hhhhhhHHHHHHHhhhHHH-HHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehH
Confidence            4556666677777754443 233331   3667777777778888999999999999999855 8999999999977777


Q ss_pred             HHhcCCC--CC---HHHHHHHHHHHHHhc-cCcchHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHHcCCc-C-c
Q 003008          194 GLLTRPS--LT---SEVKEQSMCTLWNLS-VDKKHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGVLANLALSK-S-N  263 (858)
Q Consensus       194 ~lL~~~~--~~---~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~~-~-~  263 (858)
                      ++|+...  ++   .+...-+...|.|-. .+++.+.++.+.|.++.|...+.-+  +....+.......||..-. + .
T Consensus       136 d~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~  215 (604)
T KOG4500|consen  136 DVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEML  215 (604)
T ss_pred             hhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhh
Confidence            7776531  12   355556778888876 4556799999999999999887544  5555666666666664321 2 2


Q ss_pred             hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCc
Q 003008          264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDG  343 (858)
Q Consensus       264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~  343 (858)
                      .....+......+++++.+-..  +..++-+..+|.-.+.++..+-.+++.|.+.. ++++.                  
T Consensus       216 ~~~~~d~sl~~~l~~ll~~~v~--~d~~eM~feila~~aend~Vkl~la~~gl~e~-~~~lv------------------  274 (604)
T KOG4500|consen  216 YPFCKDCSLVFMLLQLLPSMVR--EDIDEMIFEILAKAAENDLVKLSLAQNGLLED-SIDLV------------------  274 (604)
T ss_pred             hhhhccchHHHHHHHHHHHhhc--cchhhHHHHHHHHHhcCcceeeehhhcchHHH-HHHHH------------------
Confidence            2333444556677777755322  12667788888888888888888888887774 77753                  


Q ss_pred             chhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccc-
Q 003008          344 TEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWID-  422 (858)
Q Consensus       344 ~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-  422 (858)
                          ++.+..+.+.-..++....++             ++.      +.-.|...                .+.+...+ 
T Consensus       275 ----~~~k~~t~k~d~~~l~k~~~e-------------l~v------llltGDeS----------------Mq~L~~~p~  315 (604)
T KOG4500|consen  275 ----RNMKDFTKKTDMLNLFKRIAE-------------LDV------LLLTGDES----------------MQKLHADPQ  315 (604)
T ss_pred             ----HhcccccchHHHHHHHHhhhh-------------Hhh------hhhcCchH----------------HHHHhcCcH
Confidence                110000001101111111100             000      11122100                01111122 


Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcC-----CcHHHHHHHHHHHHHhhcChhHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDH-----SSDAVRLATTHALERLSVSRGVC  497 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~-----~~~~v~~~a~~aL~~Ls~~~~~~  497 (858)
                      .+..++.++.|.|...+..++-+++|+++++.++..+++.|.+..|+.+|..     ++..++.+++.||+|+.-.-.++
T Consensus       316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk  395 (604)
T KOG4500|consen  316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK  395 (604)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence            6778899999999999999999999999999999999999999999998853     45778899999999999988899


Q ss_pred             HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCCh-hHHHHHH-HHHH
Q 003008          498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDP-SIELTGN-VIEA  575 (858)
Q Consensus       498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~-~v~~~a~-~l~~  575 (858)
                      ..+..+|..+.++..++...  +.+.-.-..+++-+-.. .++-.....-...-++.|+.--+++|- .+..... .+..
T Consensus       396 a~~~~aGvteaIL~~lk~~~--ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~  472 (604)
T KOG4500|consen  396 AHFAPAGVTEAILLQLKLAS--PPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLG  472 (604)
T ss_pred             hhccccchHHHHHHHHHhcC--CcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHH
Confidence            99999999999999988544  33333333444433321 011111001111235556666666663 3555555 6666


Q ss_pred             hhccccch--hhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          576 AVSETTTS--YGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       576 L~~~~~~~--~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                      ++.+....  +..+-+.|+|..++..+.+.+...|..|+-+|.-++
T Consensus       473 lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~  518 (604)
T KOG4500|consen  473 LIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE  518 (604)
T ss_pred             HHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence            66553321  255667899999999999999999999988887664

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.60  E-value=5.7e-14  Score=143.69  Aligned_cols=199  Identities=21%  Similarity=0.185  Sum_probs=174.1

Q ss_pred             ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc
Q 003008           98 TFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN  177 (858)
Q Consensus        98 ~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~  177 (858)
                      ..+.+.+++|+.+|+.+.||.++..+..++++.+.++.++  .++++.|+++.+..+|.++++.+++.|+++|.|++.+.
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq--~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQ--DIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND   85 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHH--HHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence            3678889999999997789999999999999999988874  67889999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008          178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL  257 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL  257 (858)
                      +++..|..  .++.+++...+.+.+..++..++++|.||+..++++..+.  +.++.++.+|.+|+..++.+++++|.||
T Consensus        86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            99998865  4888888666554588999999999999999988877774  4799999999999999999999999999


Q ss_pred             cCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008          258 ALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD  304 (858)
Q Consensus       258 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~  304 (858)
                      +.++.....+..+++++.++.++....  .......++....|+..+
T Consensus       162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~--~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  162 SENPDMTRELLSAQVLSSFLSLFNSSE--SKENLLRVLTFFENINEN  206 (254)
T ss_pred             ccCHHHHHHHHhccchhHHHHHHccCC--ccHHHHHHHHHHHHHHHh
Confidence            999999888888899999999997643  233556777777777654

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=7.7e-13  Score=132.98  Aligned_cols=329  Identities=15%  Similarity=0.161  Sum_probs=252.7

Q ss_pred             hcCcHHHHHHHH---ccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cC
Q 003008          144 FSGCINLTVNLL---RSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VD  219 (858)
Q Consensus       144 ~~g~i~~Li~lL---~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~  219 (858)
                      ..|..+.++-++   .+++......++.+|..+...   +..+.++.+...++++|....++.++.......+..-| .+
T Consensus       102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~---qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h  178 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHK---QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH  178 (461)
T ss_pred             cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcC---CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence            345555554444   455666777787777777653   33466777889999988876556777777777777766 56


Q ss_pred             cchHHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHcCCcCch----------HHHHhCCCHHHHHHHHccCCCCCH
Q 003008          220 KKHRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLALSKSNH----------NILVEAGVIPKLAMLLKANVEGSK  288 (858)
Q Consensus       220 ~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~nL~~~~~~~----------~~i~~~g~i~~Lv~ll~~~~~~~~  288 (858)
                      +-||+.+++.+.++.+.+.|.. +...+.+...|++.-|...++.|          ..|.+.|++..|++.++.+-+  |
T Consensus       179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d--p  256 (461)
T KOG4199|consen  179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID--P  256 (461)
T ss_pred             HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC--c
Confidence            6789999999999999866654 45568888999999998877544          356777889999999988764  3


Q ss_pred             HHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCC
Q 003008          289 VIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVS  368 (858)
Q Consensus       289 ~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~  368 (858)
                      ...-....+|..|+.+.+.++.|.+.||+.. |+++++                                          
T Consensus       257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~t-l~~~i~------------------------------------------  293 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRDEICKSIAESGGLDT-LLRCID------------------------------------------  293 (461)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHccCHHH-HHHHHh------------------------------------------
Confidence            3556788899999999999999999999995 777521                                          


Q ss_pred             CCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003008          369 DKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIAD  448 (858)
Q Consensus       369 ~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~  448 (858)
                      +.|                                                 +.+           ..+....++..|..
T Consensus       294 d~n-------------------------------------------------~~~-----------~r~l~k~~lslLra  313 (461)
T KOG4199|consen  294 DSN-------------------------------------------------EQG-----------NRTLAKTCLSLLRA  313 (461)
T ss_pred             hhc-------------------------------------------------hhh-----------HHHHHHHHHHHHHH
Confidence            000                                                 000           11234467788888


Q ss_pred             hcCChhhHHHHHHcCcHHHHHHhhc--CCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHH
Q 003008          449 ISINEHMRMLFKEAGAIKYLVKLLD--HSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEK  525 (858)
Q Consensus       449 l~~~~~~~~~l~~~g~i~~Lv~LL~--~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~  525 (858)
                      +++++.++..+++.|+.+.++.++.  +.++.|.++++.++..|+. .|++...+++.|+-...++.++.......+|+.
T Consensus       314 lAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrn  393 (461)
T KOG4199|consen  314 LAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRN  393 (461)
T ss_pred             HhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHH
Confidence            9999999999999999999999874  4569999999999999998 899999999999999999999987777889999


Q ss_pred             HHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccch
Q 003008          526 TLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTS  583 (858)
Q Consensus       526 a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~  583 (858)
                      +++.+.|+...+.+.   ..++=..|++.|+..-.+.+++....+. +|+-|-.+...|
T Consensus       394 ac~~IRNiv~rs~~~---~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lr  449 (461)
T KOG4199|consen  394 ACNMIRNIVVRSAEN---RTILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLR  449 (461)
T ss_pred             HHHHHHHHHHhhhhc---cchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhH
Confidence            999999998744322   2344578999999999999988888887 777776555444

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.56  E-value=1e-13  Score=160.61  Aligned_cols=349  Identities=16%  Similarity=0.168  Sum_probs=250.5

Q ss_pred             HHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCC-CHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHH----
Q 003008          165 AAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSL-TSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKS----  238 (858)
Q Consensus       165 ~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~l----  238 (858)
                      ..++.+..++.+.+....+...|++|.|+++|-.+.+ +.+.+..|-.+|.|+-.. ++.+..=.+..++..|=++    
T Consensus       213 e~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC  292 (2195)
T KOG2122|consen  213 EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYC  292 (2195)
T ss_pred             HHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHH
Confidence            3456677888888888889999999999999987642 567888999999999643 3333333333333333221    


Q ss_pred             ------HccC--------CHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHcc-----CCC----CCHHHHHHHH
Q 003008          239 ------LEDE--------NMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKA-----NVE----GSKVIRKEAR  295 (858)
Q Consensus       239 ------l~~~--------~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~-----~~~----~~~~~~~~a~  295 (858)
                            +..+        +..-.-.|+.+|..++++.+.|..+.+-|+++.+-+|+.-     ++.    ....+++++.
T Consensus       293 ~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~  372 (2195)
T KOG2122|consen  293 ETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAG  372 (2195)
T ss_pred             HHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence                  2211        1223347889999999999999999999999888887653     111    1235899999


Q ss_pred             HHHHHHhc-ChhhHHHHHHc-CCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCcc
Q 003008          296 NALIELAK-DDYYRILIIEE-GLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNAN  373 (858)
Q Consensus       296 ~aL~nl~~-~~~~~~~i~~~-g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~  373 (858)
                      .+|-||.. +..|+..++.. |.+.. +|..+                      ........+..+..|+||+...+.. 
T Consensus       373 MALTNLTFGDv~NKa~LCs~rgfMea-vVAQL----------------------~s~peeL~QV~AsvLRNLSWRAD~n-  428 (2195)
T KOG2122|consen  373 MALTNLTFGDVANKATLCSQRGFMEA-VVAQL----------------------ISAPEELLQVYASVLRNLSWRADSN-  428 (2195)
T ss_pred             HHhhccccccccchhhhhhhhhHHHH-HHHHH----------------------hcChHHHHHHHHHHHHhcccccccc-
Confidence            99999999 66789888886 44554 66643                      1112244555788999998655321 


Q ss_pred             chHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHH-HhCCCCHHHHHHHHHHHHHhc-C
Q 003008          374 IDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVL-ILGLEDERAIARAAESIADIS-I  451 (858)
Q Consensus       374 i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~~l~-~  451 (858)
                           +..++.                                   ..|-+..|+. -+....+......+.+|||++ +
T Consensus       429 -----mKkvLr-----------------------------------E~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH  468 (2195)
T KOG2122|consen  429 -----MKKVLR-----------------------------------ETGSVTALAACALRNKKESTLKAVLSALWNLSAH  468 (2195)
T ss_pred             -----HHHHHH-----------------------------------hhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence                 111100                                   0011111221 123344556778899999965 7


Q ss_pred             ChhhHHHHHH-cCcHHHHHHhhcCC----cHHHHHHHHHHHHHhhc----ChhHHHHHHHcCChHHHHHhhcCCCccHHH
Q 003008          452 NEHMRMLFKE-AGAIKYLVKLLDHS----SDAVRLATTHALERLSV----SRGVCQIMEAEGVVHPLVNTLKNLDISESL  522 (858)
Q Consensus       452 ~~~~~~~l~~-~g~i~~Lv~LL~~~----~~~v~~~a~~aL~~Ls~----~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~  522 (858)
                      +.+|+..|-. -|++..|+.+|+.+    ...+.+.+.++|.|+++    ...+|+.+.+.+++..|++.|++.+  ..+
T Consensus       469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S--LTi  546 (2195)
T KOG2122|consen  469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHS--LTI  546 (2195)
T ss_pred             ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcc--eEE
Confidence            8899888885 79999999999865    36788999999999987    6788999999999999999999544  667


Q ss_pred             HHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcC
Q 003008          523 MEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKT  602 (858)
Q Consensus       523 ~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s  602 (858)
                      .-+++.+||||+.                                          .+.+.+ +.+++.|+++.|..|+.+
T Consensus       547 VSNaCGTLWNLSA------------------------------------------R~p~DQ-q~LwD~gAv~mLrnLIhS  583 (2195)
T KOG2122|consen  547 VSNACGTLWNLSA------------------------------------------RSPEDQ-QMLWDDGAVPMLRNLIHS  583 (2195)
T ss_pred             eecchhhhhhhhc------------------------------------------CCHHHH-HHHHhcccHHHHHHHHhh
Confidence            7789999999987                                          223344 778889999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCC
Q 003008          603 SYPDLQRKAASILEFITIID  622 (858)
Q Consensus       603 ~~~~v~~~a~~~L~~l~~~~  622 (858)
                      .+..|-+-++.+|.|+....
T Consensus       584 KhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  584 KHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhhHHHHHHHHhcCC
Confidence            99888888888898887655

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.46  E-value=2.5e-12  Score=131.60  Aligned_cols=174  Identities=22%  Similarity=0.314  Sum_probs=153.8

Q ss_pred             HHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC
Q 003008          141 IMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD  219 (858)
Q Consensus       141 ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~  219 (858)
                      ++ +.+-+..|+.+|+.. ++.+++.+..++.|.+..+.++..|.+.|+++.+..+|..+  ++.+++.|+++|.|++.+
T Consensus         8 ~l-~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nls~~   84 (254)
T PF04826_consen    8 IL-EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNALNNLSVN   84 (254)
T ss_pred             Cc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHHHHhcCCC
Confidence            45 678889999999864 89999999999999999999999999999999999999998  999999999999999999


Q ss_pred             cchHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHH
Q 003008          220 KKHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNA  297 (858)
Q Consensus       220 ~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~a  297 (858)
                      .+++..+-  ..++.+++.+.+.  +..++..++++|.||+..++.+..+.  +.++.++.+|.+|+.   ..+..++++
T Consensus        85 ~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~---~~k~~vLk~  157 (254)
T PF04826_consen   85 DENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSE---KTKVQVLKV  157 (254)
T ss_pred             hhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCCh---HHHHHHHHH
Confidence            99988874  3678887765554  77899999999999998888877775  479999999998854   488899999


Q ss_pred             HHHHhcChhhHHHHHHcCCccccccccc
Q 003008          298 LIELAKDDYYRILIIEEGLVPVPMVGAD  325 (858)
Q Consensus       298 L~nl~~~~~~~~~i~~~g~v~~~Lv~ll  325 (858)
                      |.||+.++.+...++.+.++.. |+.++
T Consensus       158 L~nLS~np~~~~~Ll~~q~~~~-~~~Lf  184 (254)
T PF04826_consen  158 LVNLSENPDMTRELLSAQVLSS-FLSLF  184 (254)
T ss_pred             HHHhccCHHHHHHHHhccchhH-HHHHH
Confidence            9999999999999999999984 88874

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.46  E-value=2.1e-11  Score=126.42  Aligned_cols=408  Identities=13%  Similarity=0.090  Sum_probs=271.5

Q ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC----C---HHHHHHHHHHHH
Q 003008           99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE----S---SAACEAAAGLLR  171 (858)
Q Consensus        99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~----~---~~~~~~a~~aL~  171 (858)
                      ...|.+..|..... |+|.++-.++.++|+|++.++...+..+. +.||-..+++.|+..    +   .+.-..+.+.|.
T Consensus        84 I~a~~le~Lrq~ps-S~d~ev~~Q~~RaLgNiCydn~E~R~a~~-~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~  161 (604)
T KOG4500|consen   84 IDAEALELLRQTPS-SPDTEVHEQCFRALGNICYDNNENRAAFF-NLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH  161 (604)
T ss_pred             hHHHHHHHHHhCCC-CCcccHHHHHHHHHhhhhccCchhHHHHH-hcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence            46778888888886 77888999999999999998888766666 799977777777643    2   344445778888


Q ss_pred             HhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-Ccch-HHHHHhCCCHHHHHHHHccC-CHHHH
Q 003008          172 SISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKH-RLKIANTDILPLLIKSLEDE-NMKVK  247 (858)
Q Consensus       172 nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~-~~~i~~~g~i~~Lv~ll~~~-~~~~~  247 (858)
                      |-..+. +.|..+++.|+++.|..++--+-.+....+.......||.. -.++ .....+....-.+++++.+- .+++.
T Consensus       162 Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~  241 (604)
T KOG4500|consen  162 NYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDID  241 (604)
T ss_pred             HhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchh
Confidence            887654 69999999999999998766442266777777777777653 2233 44444666677788888765 67889


Q ss_pred             HHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHH-----HHHHHHHHHHHHhcChhhHHHHHHcC-Cccccc
Q 003008          248 EAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKV-----IRKEARNALIELAKDDYYRILIIEEG-LVPVPM  321 (858)
Q Consensus       248 ~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~-----~~~~a~~aL~nl~~~~~~~~~i~~~g-~v~~~L  321 (858)
                      +.+...|...+.++..+..+.++|.++.++.+++.....+..     .-..++....-+...++.-..+..-+ .+. .+
T Consensus       242 eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~-~~  320 (604)
T KOG4500|consen  242 EMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLD-FL  320 (604)
T ss_pred             hHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHH-HH
Confidence            999999999999999999999999999999999873332211     11112222222222233333333333 333 24


Q ss_pred             ccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCcc--chHHHHhhhhhhhhhhHHHHhhcccc
Q 003008          322 VGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNAN--IDEAKMNAMVGRSRQHFLVRIGAIES  399 (858)
Q Consensus       322 v~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~--i~~~~~~~li~~~~~~~L~~~~~~~~  399 (858)
                      +.                      ++++.+.+.+.....++.|++..++++.  ++...++                   
T Consensus       321 ~s----------------------w~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~n-------------------  359 (604)
T KOG4500|consen  321 ES----------------------WFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLN-------------------  359 (604)
T ss_pred             HH----------------------HhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHH-------------------
Confidence            43                      3344444566667788899987775432  2323333                   


Q ss_pred             cCCCCCCCCCCcccccccccccccHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcC
Q 003008          400 EDGRKPQSEFPIDRQLTLLPWIDGVARLVLILG-----LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDH  474 (858)
Q Consensus       400 ~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~  474 (858)
                                                .|+..|.     +++-+.|..++.+|.|+..--.++..+..+|.++.+...++.
T Consensus       360 --------------------------kL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~  413 (604)
T KOG4500|consen  360 --------------------------KLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKL  413 (604)
T ss_pred             --------------------------HHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHh
Confidence                                      3333332     346678899999999998888899999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhhcChh-HHHHH-HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCc
Q 003008          475 SSDAVRLATTHALERLSVSRG-VCQIM-EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGS  552 (858)
Q Consensus       475 ~~~~v~~~a~~aL~~Ls~~~~-~~~~l-~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i  552 (858)
                      ..+.|...-.+.|..+-...+ ....+ ..-..+..|+.--++++. ..+--..-..+..+-..++...--..+..+||+
T Consensus       414 ~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~-aGv~gESnRll~~lIkHs~~kdv~~tvpksg~i  492 (604)
T KOG4500|consen  414 ASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDF-AGVAGESNRLLLGLIKHSKYKDVILTVPKSGGI  492 (604)
T ss_pred             cCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCcc-chhhhhhhHHHHHHHHhhHhhhhHhhccccccH
Confidence            999998887777776655433 22222 222345555555554442 122223333444443311111111245667899


Q ss_pred             HHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008          553 EKGLDAAESLDPSIELTGN-VIEAAV  577 (858)
Q Consensus       553 ~~Li~ll~s~d~~v~~~a~-~l~~L~  577 (858)
                      +..++.+.+.+...+-.++ +++.+.
T Consensus       493 k~~Vsm~t~~hi~mqnEalVal~~~~  518 (604)
T KOG4500|consen  493 KEKVSMFTKNHINMQNEALVALLSTE  518 (604)
T ss_pred             HHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence            9999999988888887777 666543

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=2.7e-10  Score=119.60  Aligned_cols=273  Identities=19%  Similarity=0.222  Sum_probs=197.4

Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCC
Q 003008          164 EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDEN  243 (858)
Q Consensus       164 ~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~  243 (858)
                      ..|+-.|.|++.+-..-..+.....+..||+.|...  +.+........|..||..++||..+.+.|.+..|++++...+
T Consensus       281 rva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~--n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h  358 (791)
T KOG1222|consen  281 RVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRS--NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH  358 (791)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHccc--chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence            356777888888776667777888899999999987  888888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCccccccc
Q 003008          244 MKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVG  323 (858)
Q Consensus       244 ~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~  323 (858)
                      ++++...+..|.|++.+...|..++..|.+|.|+.++.+.+     -...|...|.+++.+++.+....-...++. +++
T Consensus       359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~-----~~~iA~~~lYh~S~dD~~K~MfayTdci~~-lmk  432 (791)
T KOG1222|consen  359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT-----KHGIALNMLYHLSCDDDAKAMFAYTDCIKL-LMK  432 (791)
T ss_pred             HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc-----cchhhhhhhhhhccCcHHHHHHHHHHHHHH-HHH
Confidence            99999999999999999999999999999999999997643     234689999999999988888888888884 666


Q ss_pred             ccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHH-hccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCC
Q 003008          324 ADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELL-LGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDG  402 (858)
Q Consensus       324 ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL-~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~  402 (858)
                      .+                    +..+++ .+-. ++-++ .|++.+..|.++                            
T Consensus       433 ~v--------------------~~~~~~-~vdl-~lia~ciNl~lnkRNaQl----------------------------  462 (791)
T KOG1222|consen  433 DV--------------------LSGTGS-EVDL-ALIALCINLCLNKRNAQL----------------------------  462 (791)
T ss_pred             HH--------------------HhcCCc-eecH-HHHHHHHHHHhccccceE----------------------------
Confidence            42                    001111 1111 22222 255544444331                            


Q ss_pred             CCCCCCCCcccccccccccc-cHHHHHHH-hCCCCHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHhhcCCc-HH
Q 003008          403 RKPQSEFPIDRQLTLLPWID-GVARLVLI-LGLEDERAIARAAESIADISINEH-MRMLFKEAGAIKYLVKLLDHSS-DA  478 (858)
Q Consensus       403 ~~~~l~~~~~~~~~~l~~~~-~i~~Lv~l-L~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~g~i~~Lv~LL~~~~-~~  478 (858)
                                      .-+| ++..|... +++.|. ...+   .+.|++.++. .+..++  ..|.-|...++..+ ..
T Consensus       463 ----------------vceGqgL~~LM~ra~k~~D~-lLmK---~vRniSqHeg~tqn~Fi--dyvgdLa~i~~nd~~E~  520 (791)
T KOG1222|consen  463 ----------------VCEGQGLDLLMERAIKSRDL-LLMK---VVRNISQHEGATQNMFI--DYVGDLAGIAKNDNSES  520 (791)
T ss_pred             ----------------EecCcchHHHHHHHhcccch-HHHH---HHHHhhhccchHHHHHH--HHHHHHHHHhhcCchHH
Confidence                            1122 44444433 222222 2223   3344444333 333333  34666777776544 66


Q ss_pred             HHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCC
Q 003008          479 VRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNL  516 (858)
Q Consensus       479 v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~  516 (858)
                      .-..|.+.|+||.- +-++...+.....+|.+-..|+..
T Consensus       521 F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pg  559 (791)
T KOG1222|consen  521 FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPG  559 (791)
T ss_pred             HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCC
Confidence            77888899999987 677888888899999999888743

>PRK09687 putative lyase; Provisional

Probab=99.45  E-value=9.2e-12  Score=130.63  Aligned_cols=162  Identities=14%  Similarity=0.086  Sum_probs=120.0

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA  502 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~  502 (858)
                      -++.|..+|.+++..++..++++|..+..          ....+.+..+++++++.+|..++++|+.|......     .
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~   88 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q   88 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence            46788999999999999999999998765          56788899999999999999999999999753211     1


Q ss_pred             cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcccc
Q 003008          503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETT  581 (858)
Q Consensus       503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~  581 (858)
                      ...++.|..++. .+.+..++..++.+|+++......+       ....+..+...+.++++.|+..++ +|..+     
T Consensus        89 ~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~~~~~-------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-----  155 (280)
T PRK09687         89 DNVFNILNNLAL-EDKSACVRASAINATGHRCKKNPLY-------SPKIVEQSQITAFDKSTNVRFAVAFALSVI-----  155 (280)
T ss_pred             HHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccccccc-------chHHHHHHHHHhhCCCHHHHHHHHHHHhcc-----
Confidence            235677776643 3445899999999999986522111       112345566777778888888877 66433     


Q ss_pred             chhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008          582 TSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFI  618 (858)
Q Consensus       582 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l  618 (858)
                            .+...++.|+.+|++.++.|+..|+.+|+.+
T Consensus       156 ------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        156 ------NDEAAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             ------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence                  1233678888888888888888888777665

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.40  E-value=1.3e-09  Score=124.62  Aligned_cols=388  Identities=15%  Similarity=0.131  Sum_probs=271.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-hHHHH
Q 003008          105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YRDLV  183 (858)
Q Consensus       105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~~~~i  183 (858)
                      +.+.+.|+ +.+.+....++.+|..+-.....  ..+  ..+..+.|...|.++++.+|..+++.|.++..+++ ....+
T Consensus        41 ~~lf~~L~-~~~~e~v~~~~~iL~~~l~~~~~--~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLN-TSNREQVELICDILKRLLSALSP--DSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHh-hcChHHHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            44777787 66656666666677666553332  223  37888999999999999999999999999988765 45666


Q ss_pred             HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-C
Q 003008          184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-S  262 (858)
Q Consensus       184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-~  262 (858)
                      .+.+.++.++.++.++  +..+...|+.+|.+++.++.....+...+.+..|..++..++..+|..+..++.+++... +
T Consensus       116 ~~~~l~~~i~~~L~~~--d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDP--DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCC--cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence            7799999999999998  999999999999999998888778888888999999999888889999999999998764 5


Q ss_pred             chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCC
Q 003008          263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPD  342 (858)
Q Consensus       263 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~  342 (858)
                      ....+.+.|.++.++..+++.   ...++.+++..|..|+..+.+...+.+.|+++. |++++.....+|.+.       
T Consensus       194 ~~~~~~~sgll~~ll~eL~~d---DiLvqlnalell~~La~~~~g~~yL~~~gi~~~-L~~~l~~~~~dp~~~-------  262 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSD---DILVQLNALELLSELAETPHGLQYLEQQGIFDK-LSNLLQDSEEDPRLS-------  262 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCc---cHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHH-HHHHHhccccCCccc-------
Confidence            555777889999999999763   455889999999999999999999999999995 888753222211000       


Q ss_pred             cchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccc
Q 003008          343 GTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWID  422 (858)
Q Consensus       343 ~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  422 (858)
                              . -.........++++....                 ++++                        ..  ...
T Consensus       263 --------~-~~l~g~~~f~g~la~~~~-----------------~~v~------------------------~~--~p~  290 (503)
T PF10508_consen  263 --------S-LLLPGRMKFFGNLARVSP-----------------QEVL------------------------EL--YPA  290 (503)
T ss_pred             --------c-hhhhhHHHHHHHHHhcCh-----------------HHHH------------------------HH--HHH
Confidence                    0 000001112222221000                 0000                        00  012


Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHH-HHc-Cc----HHHHHHhhcCCcHHHHHHHHHHHHHhhcChhH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLF-KEA-GA----IKYLVKLLDHSSDAVRLATTHALERLSVSRGV  496 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l-~~~-g~----i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~  496 (858)
                      .+..+..++.+.|+..+..|..+++.++.+.+.+..+ ... +.    +........++..++|..+..+|.++-.....
T Consensus       291 ~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~  370 (503)
T PF10508_consen  291 FLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD  370 (503)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence            4556678889999999999999999999999999888 433 23    44445556677789999999999998542110


Q ss_pred             HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcH-HHHHhhcCCChhHHHHHH-HHH
Q 003008          497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSE-KGLDAAESLDPSIELTGN-VIE  574 (858)
Q Consensus       497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~-~Li~ll~s~d~~v~~~a~-~l~  574 (858)
                                          ..+.++....-.....+..              +... .++++++.|=||++..+. .+.
T Consensus       371 --------------------~~~~~i~~~~~~w~~~~~~--------------~~~~~~l~~~~~qPF~elr~a~~~~l~  416 (503)
T PF10508_consen  371 --------------------RQDNDILSITESWYESLSG--------------SPLSNLLMSLLKQPFPELRCAAYRLLQ  416 (503)
T ss_pred             --------------------CchHHHHHHHHHHHHHhcC--------------CchHHHHHHHhcCCchHHHHHHHHHHH
Confidence                                0001111111111111221              0112 566667666689999998 888


Q ss_pred             HhhccccchhhhHhhccchhHHHHhh
Q 003008          575 AAVSETTTSYGKVLDSVFIGRMIGIM  600 (858)
Q Consensus       575 ~L~~~~~~~~~~i~~~g~i~~L~~lL  600 (858)
                      .++...... ..+...++   +++++
T Consensus       417 ~l~~~~Wg~-~~i~~~~g---fie~l  438 (503)
T PF10508_consen  417 ALAAQPWGQ-REICSSPG---FIEYL  438 (503)
T ss_pred             HHhcCHHHH-HHHHhCcc---HHhhh
Confidence            888888777 66766544   44554

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.40  E-value=1.5e-10  Score=141.85  Aligned_cols=279  Identities=20%  Similarity=0.161  Sum_probs=206.7

Q ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch
Q 003008           99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV  178 (858)
Q Consensus        99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~  178 (858)
                      .+.+.++.|+..|+ ++|+.+|..|+..|..+.            ..+.++.|+..|.++++.+|..|+.+|..+.... 
T Consensus       618 l~~~~~~~L~~~L~-D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-  683 (897)
T PRK13800        618 LDAPSVAELAPYLA-DPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-  683 (897)
T ss_pred             ccchhHHHHHHHhc-CCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-
Confidence            37788899999998 999999999999998653            2456788999999999999999999998885321 


Q ss_pred             hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008          179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA  258 (858)
Q Consensus       179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~  258 (858)
                              ...+.|...|.++  ++.++..++.+|..+..           +....|++.|.++++.++..|+.+|..+.
T Consensus       684 --------~~~~~L~~~L~~~--d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~  742 (897)
T PRK13800        684 --------PPAPALRDHLGSP--DPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD  742 (897)
T ss_pred             --------CchHHHHHHhcCC--CHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence                    1236777888887  99999999999988652           22456788999999999999999998752


Q ss_pred             CCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCC
Q 003008          259 LSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWP  338 (858)
Q Consensus       259 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~  338 (858)
                                   ..+.|..++...   .+.+|..++.+|..+.....        ..++ .|..++             
T Consensus       743 -------------~~~~l~~~l~D~---~~~VR~~aa~aL~~~~~~~~--------~~~~-~L~~ll-------------  784 (897)
T PRK13800        743 -------------DVESVAGAATDE---NREVRIAVAKGLATLGAGGA--------PAGD-AVRALT-------------  784 (897)
T ss_pred             -------------CcHHHHHHhcCC---CHHHHHHHHHHHHHhccccc--------hhHH-HHHHHh-------------
Confidence                         234566777554   46699999999998875321        1133 244432             


Q ss_pred             CCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccc
Q 003008          339 SLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLL  418 (858)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l  418 (858)
                               ...+..++..++.+|.++....                                                 
T Consensus       785 ---------~D~d~~VR~aA~~aLg~~g~~~-------------------------------------------------  806 (897)
T PRK13800        785 ---------GDPDPLVRAAALAALAELGCPP-------------------------------------------------  806 (897)
T ss_pred             ---------cCCCHHHHHHHHHHHHhcCCcc-------------------------------------------------
Confidence                     1112133333555555442111                                                 


Q ss_pred             cccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHH
Q 003008          419 PWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQ  498 (858)
Q Consensus       419 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~  498 (858)
                         .....++..|+++++.++..|+.+|+.+..          ..+++.|+.+|++++..||..|+.+|+.+..++.   
T Consensus       807 ---~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~---  870 (897)
T PRK13800        807 ---DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPA---  870 (897)
T ss_pred             ---hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHH---
Confidence               023457788899999999999999998765          4578999999999999999999999999743333   


Q ss_pred             HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHH
Q 003008          499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGR  532 (858)
Q Consensus       499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~  532 (858)
                            ..+.|...+.+.  +..++..|..+|..
T Consensus       871 ------a~~~L~~al~D~--d~~Vr~~A~~aL~~  896 (897)
T PRK13800        871 ------ARDALTTALTDS--DADVRAYARRALAH  896 (897)
T ss_pred             ------HHHHHHHHHhCC--CHHHHHHHHHHHhh
Confidence                  366777788744  58899999888753

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.34  E-value=1e-09  Score=125.60  Aligned_cols=345  Identities=16%  Similarity=0.176  Sum_probs=244.2

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhH
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYR  180 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~  180 (858)
                      .+..+.|...|. .+++.+|..+++.|.+++.+++... .++.+.+.++.++..+.+++.++...|+.+|.+|+..+...
T Consensus        76 ~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~-~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~  153 (503)
T PF10508_consen   76 PQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAA-QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL  153 (503)
T ss_pred             HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHH-HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH
Confidence            566677888887 7888999999999999998777643 45558999999999999999999999999999999988877


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008          181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL  259 (858)
Q Consensus       181 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~  259 (858)
                      ..+...+.+..|..++...  +..++..+..++.+++. +++....+...|.++.++..+.++|.-++..++.+|..|+.
T Consensus       154 ~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~  231 (503)
T PF10508_consen  154 EQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE  231 (503)
T ss_pred             HHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence            8888888899999999987  88889999999999985 45667777789999999999999998999999999999999


Q ss_pred             CcCchHHHHhCCCHHHHHHHHccCCCCC--HH-HHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCC
Q 003008          260 SKSNHNILVEAGVIPKLAMLLKANVEGS--KV-IRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELH  335 (858)
Q Consensus       260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~--~~-~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~  335 (858)
                      .+.+...+.+.|+++.|+.++....++.  .. .--.......+++.. +....     +..+. +++.+.         
T Consensus       232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~-----~~~p~-~~~~l~---------  296 (503)
T PF10508_consen  232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVL-----ELYPA-FLERLF---------  296 (503)
T ss_pred             ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHH-----HHHHH-HHHHHH---------
Confidence            9999999999999999999997654432  11 111233556666663 22111     12222 222210         


Q ss_pred             CCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc
Q 003008          336 SWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL  415 (858)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~  415 (858)
                               ..+...+...+..|..++..++....       +-..+.        ...+.                   
T Consensus       297 ---------~~~~s~d~~~~~~A~dtlg~igst~~-------G~~~L~--------~~~~~-------------------  333 (503)
T PF10508_consen  297 ---------SMLESQDPTIREVAFDTLGQIGSTVE-------GKQLLL--------QKQGP-------------------  333 (503)
T ss_pred             ---------HHhCCCChhHHHHHHHHHHHHhCCHH-------HHHHHH--------hhcch-------------------
Confidence                     01122232344447778887754331       111110        00000                   


Q ss_pred             ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCh-------hhHHHHH---HcCcHH-HHHHhhcCCcHHHHHH
Q 003008          416 TLLPWIDGVARLVLILGLEDERAIARAAESIADI--SINE-------HMRMLFK---EAGAIK-YLVKLLDHSSDAVRLA  482 (858)
Q Consensus       416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l--~~~~-------~~~~~l~---~~g~i~-~Lv~LL~~~~~~v~~~  482 (858)
                         .....+..+-....++..+++..+..++.++  ...+       ......+   ..+-.. .+..+++.+-+++|..
T Consensus       334 ---~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a  410 (503)
T PF10508_consen  334 ---AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCA  410 (503)
T ss_pred             ---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHH
Confidence               0011344555566677788888899998885  2322       1122222   233444 7788998888999999


Q ss_pred             HHHHHHHhhcChhHHHHHHHc-CChHHHH
Q 003008          483 TTHALERLSVSRGVCQIMEAE-GVVHPLV  510 (858)
Q Consensus       483 a~~aL~~Ls~~~~~~~~l~~~-g~i~~Li  510 (858)
                      +...|..|+..+-..+.+... |.+..|+
T Consensus       411 ~~~~l~~l~~~~Wg~~~i~~~~gfie~ll  439 (503)
T PF10508_consen  411 AYRLLQALAAQPWGQREICSSPGFIEYLL  439 (503)
T ss_pred             HHHHHHHHhcCHHHHHHHHhCccHHhhhc
Confidence            999999999976665556554 4444444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.34  E-value=2.9e-10  Score=139.31  Aligned_cols=273  Identities=17%  Similarity=0.125  Sum_probs=196.1

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA  502 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~  502 (858)
                      .++.|+.+|.++++.+|..|+.+|+....          .++++.|+.+|+++++.||..|+.+|..+....        
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--------  683 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL--------  683 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--------
Confidence            67889999999999999999999999754          568999999999999999999999998885321        


Q ss_pred             cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcccc
Q 003008          503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETT  581 (858)
Q Consensus       503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~  581 (858)
                       ...+.|...|.++  ++.++..+..+|..+...              ....++..+.++|+.++..++ +|..+     
T Consensus       684 -~~~~~L~~~L~~~--d~~VR~~A~~aL~~~~~~--------------~~~~l~~~L~D~d~~VR~~Av~aL~~~-----  741 (897)
T PRK13800        684 -PPAPALRDHLGSP--DPVVRAAALDVLRALRAG--------------DAALFAAALGDPDHRVRIEAVRALVSV-----  741 (897)
T ss_pred             -CchHHHHHHhcCC--CHHHHHHHHHHHHhhccC--------------CHHHHHHHhcCCCHHHHHHHHHHHhcc-----
Confidence             1235677788743  488999999888887531              134678899999999999988 65532     


Q ss_pred             chhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCcc
Q 003008          582 TSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKY  661 (858)
Q Consensus       582 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~  661 (858)
                               +..+.|..++.++++.|+..++.+|..+.......           +..|.  .++.+.+.          
T Consensus       742 ---------~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~-----------~~~L~--~ll~D~d~----------  789 (897)
T PRK13800        742 ---------DDVESVAGAATDENREVRIAVAKGLATLGAGGAPA-----------GDAVR--ALTGDPDP----------  789 (897)
T ss_pred             ---------cCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchh-----------HHHHH--HHhcCCCH----------
Confidence                     23456788999999999999999998885432211           01111  12222111          


Q ss_pred             chhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhh
Q 003008          662 ALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINME  741 (858)
Q Consensus       662 ~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  741 (858)
                                                      ..                  +......|..+.          .     
T Consensus       790 --------------------------------~V------------------R~aA~~aLg~~g----------~-----  804 (897)
T PRK13800        790 --------------------------------LV------------------RAAALAALAELG----------C-----  804 (897)
T ss_pred             --------------------------------HH------------------HHHHHHHHHhcC----------C-----
Confidence                                            00                  000111111110          0     


Q ss_pred             hhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCcc
Q 003008          742 VTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSE  821 (858)
Q Consensus       742 i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~  821 (858)
                        ....++.++..|.++++.||..|+.+|..+....            .+++|+.+|++++..||..|+.+|..+..++.
T Consensus       805 --~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~------------a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~  870 (897)
T PRK13800        805 --PPDDVAAATAALRASAWQVRQGAARALAGAAADV------------AVPALVEALTDPHLDVRKAAVLALTRWPGDPA  870 (897)
T ss_pred             --cchhHHHHHHHhcCCChHHHHHHHHHHHhccccc------------hHHHHHHHhcCCCHHHHHHHHHHHhccCCCHH
Confidence              0113467888999999999999999998764333            34999999999999999999999988732222


Q ss_pred             chHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008          822 NHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRN  855 (858)
Q Consensus       822 ~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~  855 (858)
                               +.+.|..++.+.++.+ ..|..+|+.
T Consensus       871 ---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        871 ---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             ---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence                     3568889999999999 777777763

>PRK09687 putative lyase; Provisional

Probab=99.26  E-value=5.4e-10  Score=117.31  Aligned_cols=254  Identities=16%  Similarity=0.119  Sum_probs=186.0

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003008          147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKI  226 (858)
Q Consensus       147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i  226 (858)
                      -++.|+.+|.+.+..+|..++++|..+...          .+++.+..++.++  ++.++..++++|+.|-..+..    
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~----------~~~~~l~~ll~~~--d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ----------DVFRLAIELCSSK--NPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc----------hHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCccc----
Confidence            467889999999999999999999988643          3578888899888  999999999999998654432    


Q ss_pred             HhCCCHHHHHHH-HccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh
Q 003008          227 ANTDILPLLIKS-LEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD  305 (858)
Q Consensus       227 ~~~g~i~~Lv~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~  305 (858)
                       ..-.++.|..+ ++++++.|+..++.+|.+++......    ...+++.+...+.+.   ...+|..++.+|..+... 
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~---~~~VR~~a~~aLg~~~~~-  158 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDK---STNVRFAVAFALSVINDE-  158 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCC---CHHHHHHHHHHHhccCCH-
Confidence             22356778777 66779999999999999986433211    112344555666543   455899999998766421 


Q ss_pred             hhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhh
Q 003008          306 YYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGR  385 (858)
Q Consensus       306 ~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~  385 (858)
                               .+++ .|+.++                      ...+..+++.++.+|..+..+.                
T Consensus       159 ---------~ai~-~L~~~L----------------------~d~~~~VR~~A~~aLg~~~~~~----------------  190 (280)
T PRK09687        159 ---------AAIP-LLINLL----------------------KDPNGDVRNWAAFALNSNKYDN----------------  190 (280)
T ss_pred             ---------HHHH-HHHHHh----------------------cCCCHHHHHHHHHHHhcCCCCC----------------
Confidence                     1345 366653                      1112245555777776662211                


Q ss_pred             hhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcH
Q 003008          386 SRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAI  465 (858)
Q Consensus       386 ~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i  465 (858)
                                                         ...++.|+.+|.+++++|+..|+++|+.+..          ..++
T Consensus       191 -----------------------------------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av  225 (280)
T PRK09687        191 -----------------------------------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVL  225 (280)
T ss_pred             -----------------------------------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHH
Confidence                                               1256778899999999999999999999765          5689


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHH
Q 003008          466 KYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILG  531 (858)
Q Consensus       466 ~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~  531 (858)
                      +.|+..|.+++  ++..++.+|+++...          .++|.|..++.... |..++..+.++|.
T Consensus       226 ~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~-d~~v~~~a~~a~~  278 (280)
T PRK09687        226 SVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFD-DNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence            99999999876  678899999999852          36899999997333 5888888877764

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.25  E-value=3.5e-09  Score=116.37  Aligned_cols=465  Identities=16%  Similarity=0.095  Sum_probs=284.6

Q ss_pred             cccCCCcHHHHHHHhcCCCCH--HHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHh
Q 003008           97 STFGDSYVALFVQMLGLDYDP--LDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSES-SAACEAAAGLLRSI  173 (858)
Q Consensus        97 ~~~~~g~i~~lv~lL~~s~d~--~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~-~~~~~~a~~aL~nL  173 (858)
                      ...+.|+++.+..+++ ..|.  ..+......+..+...+...+..+. +.+.++.|.++|.+.+ ..+++..++.++++
T Consensus        46 ~~ik~GAv~~Ll~L~s-~e~~s~~~k~~~~~llns~f~~eqd~v~svL-~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~I  123 (678)
T KOG1293|consen   46 TNIKLGAVELLLALLS-LEDGSTELKNGFAVLLNSLFLGEQDKVDSVL-RIIELLKLLQLLSESDSLNVLEKTLRCLRTI  123 (678)
T ss_pred             hhhhhcchHHHHhhcc-ccCCchhhhhhHHHHHHhHHhhccchHHHHH-HHhhHHHHHHHhcCcchHhHHHHHHHHHHHH
Confidence            3467899999999996 5543  4444455555666666665566666 7999999999999988 77888999999999


Q ss_pred             hcCch---hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHH
Q 003008          174 SSINV---YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAA  250 (858)
Q Consensus       174 s~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a  250 (858)
                      -....   .....-....++.+..++..+  .....+.-+....++|+..+++..+...|..+.+.-++...+...|..|
T Consensus       124 fet~~~q~~~~s~~~~sIi~~~s~l~s~~--lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~Rlaa  201 (678)
T KOG1293|consen  124 FETSKYQDKKMSLHLKSIIVKFSLLYSIE--LKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAA  201 (678)
T ss_pred             HhcccccccchhhhHHHHHHHHHHHHhhh--hhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHH
Confidence            66543   333333344566666666644  6677777778888889888888888899999998888877788999999


Q ss_pred             HHHHH---HHcCCcCch-H----HHHhCCCHHH-HHH-HHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccc
Q 003008          251 GGVLA---NLALSKSNH-N----ILVEAGVIPK-LAM-LLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVP  320 (858)
Q Consensus       251 ~~~L~---nL~~~~~~~-~----~i~~~g~i~~-Lv~-ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~  320 (858)
                      ..+++   ++..+++.. .    .+...|..+. .+. +++++...   .+..++.+|..+..-..+..          +
T Consensus       202 L~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s---~~l~sl~cl~~~~~~s~~~d----------~  268 (678)
T KOG1293|consen  202 LLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS---ERLRSLECLVPYLRKSFNYD----------P  268 (678)
T ss_pred             HHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc---HHHHHHHHHHHHHhcccccc----------c
Confidence            99999   777665332 2    2344555542 444 56555332   34566666666654211110          1


Q ss_pred             cccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhccccc
Q 003008          321 MVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESE  400 (858)
Q Consensus       321 Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~  400 (858)
                      +.-..   .+         .+-|.+      .-.++.+. .+.|-   +.-...+....  +-+     .+++...    
T Consensus       269 l~~~~---~~---------~dmgd~------~i~q~~~i-~l~~~---P~~s~l~~~~~--l~c-----~~a~~~s----  315 (678)
T KOG1293|consen  269 LPWWF---IF---------FDMGDS------LIVQYNCI-VLMND---PGLSTLDHTNV--LFC-----ILARFAS----  315 (678)
T ss_pred             cccce---ee---------ccCchH------HHHHHhhh-eeecC---Cceeehhhhhh--hHH-----HHHHHHH----
Confidence            11100   00         000000      00000000 00000   00000000000  000     0000000    


Q ss_pred             CCCCCCCCCCcccccccccccccHHHHHHHh------CCCCHHHHHHHHH---HHHHhcC--ChhhHHHHHHcCcHHHHH
Q 003008          401 DGRKPQSEFPIDRQLTLLPWIDGVARLVLIL------GLEDERAIARAAE---SIADISI--NEHMRMLFKEAGAIKYLV  469 (858)
Q Consensus       401 ~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL------~~~~~~v~~~a~~---aL~~l~~--~~~~~~~l~~~g~i~~Lv  469 (858)
                                 +.+ ..-..+...+..++++      ...+++.+.-++.   .+...+.  .-..++.+.+.-....+.
T Consensus       316 -----------klq-~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~  383 (678)
T KOG1293|consen  316 -----------KLQ-LPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLM  383 (678)
T ss_pred             -----------hhh-hHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHc
Confidence                       000 0000001222222222      1223333222111   1111221  234455566555556666


Q ss_pred             HhhcCCcHHHHHHHHHHHHHhhcC-hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc-cccccc
Q 003008          470 KLLDHSSDAVRLATTHALERLSVS-RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK-SKFYDI  547 (858)
Q Consensus       470 ~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~i~  547 (858)
                      .+....+.+++.+++.++.+++.+ ...|.-+....++.+|++++.+|+  ..++..+.++|+|+.-   ++. .|..+.
T Consensus       384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~--~~i~~~~lgai~NlVm---efs~~kskfl  458 (678)
T KOG1293|consen  384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPE--IMIMGITLGAICNLVM---EFSNLKSKFL  458 (678)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcc--hhHHHHHHHHHHHHHh---hcccHHHHHH
Confidence            666677889999999999999873 555666777789999999998777  7888899999999987   555 455688


Q ss_pred             cCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccc-hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 003008          548 PVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTT-SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSM  625 (858)
Q Consensus       548 ~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~-~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~  625 (858)
                      ..||++.+.+++.++|+.++.++. +++++....+. ++......-....++.+.+++++.||+.|...|+|+.++....
T Consensus       459 ~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s  538 (678)
T KOG1293|consen  459 RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS  538 (678)
T ss_pred             HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence            899999999999999999999999 99998754332 2133333333467888999999999999999999999876544


Q ss_pred             HHH
Q 003008          626 DTI  628 (858)
Q Consensus       626 ~~~  628 (858)
                      ..+
T Consensus       539 vdf  541 (678)
T KOG1293|consen  539 VDF  541 (678)
T ss_pred             HHH
Confidence            333

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.25  E-value=4.4e-08  Score=114.69  Aligned_cols=500  Identities=20%  Similarity=0.188  Sum_probs=292.5

Q ss_pred             HHHHHHhcCCC--CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHH
Q 003008          105 ALFVQMLGLDY--DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDL  182 (858)
Q Consensus       105 ~~lv~lL~~s~--d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~  182 (858)
                      ..+.+.++ +.  +...+..++.-|..+...+.+     +  ..+.+.+++++.+.+.+.+.-+--++..+...++....
T Consensus         7 ~el~~~~~-~~~~~~~~~~~~l~kli~~~~~G~~-----~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~   78 (526)
T PF01602_consen    7 QELAKILN-SFKIDISKKKEALKKLIYLMMLGYD-----I--SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLI   78 (526)
T ss_dssp             HHHHHHHH-CSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHH
T ss_pred             HHHHHHHh-cCCCCHHHHHHHHHHHHHHHHcCCC-----C--chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHH
Confidence            34556665 44  556666666666555543333     1  35667788888888988888777777777765543222


Q ss_pred             HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcC
Q 003008          183 VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS  262 (858)
Q Consensus       183 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~  262 (858)
                      +    ++..+.+=|.++  ++.++..|+++|.+++. ++-...     .++.+.+++.++++.+|..|+.++..+.....
T Consensus        79 l----~~n~l~kdl~~~--n~~~~~lAL~~l~~i~~-~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p  146 (526)
T PF01602_consen   79 L----IINSLQKDLNSP--NPYIRGLALRTLSNIRT-PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDP  146 (526)
T ss_dssp             H----HHHHHHHHHCSS--SHHHHHHHHHHHHHH-S-HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH
T ss_pred             H----HHHHHHHhhcCC--CHHHHHHHHhhhhhhcc-cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCH
Confidence            2    467777778887  99999999999999883 222222     36788888999999999999999998875422


Q ss_pred             chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCC
Q 003008          263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPD  342 (858)
Q Consensus       263 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~  342 (858)
                      .  .+... .++.+.+++.+.   .+.++..|+.++..+-.+++...     ..++                        
T Consensus       147 ~--~~~~~-~~~~l~~lL~d~---~~~V~~~a~~~l~~i~~~~~~~~-----~~~~------------------------  191 (526)
T PF01602_consen  147 D--LVEDE-LIPKLKQLLSDK---DPSVVSAALSLLSEIKCNDDSYK-----SLIP------------------------  191 (526)
T ss_dssp             C--CHHGG-HHHHHHHHTTHS---SHHHHHHHHHHHHHHHCTHHHHT-----THHH------------------------
T ss_pred             H--HHHHH-HHHHHhhhccCC---cchhHHHHHHHHHHHccCcchhh-----hhHH------------------------
Confidence            1  11222 577888888554   35577777777777711111000     0000                        


Q ss_pred             cchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccc
Q 003008          343 GTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWID  422 (858)
Q Consensus       343 ~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  422 (858)
                                                                                                     .
T Consensus       192 -------------------------------------------------------------------------------~  192 (526)
T PF01602_consen  192 -------------------------------------------------------------------------------K  192 (526)
T ss_dssp             -------------------------------------------------------------------------------H
T ss_pred             -------------------------------------------------------------------------------H
Confidence                                                                                           0


Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME  501 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~  501 (858)
                      .+..|..++...++..+....+.|...+. .++....   ...++.+..++++.++.|...|+.++..+..++.     .
T Consensus       193 ~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~  264 (526)
T PF01602_consen  193 LIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----L  264 (526)
T ss_dssp             HHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----H
T ss_pred             HHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----H
Confidence            12223344455666677777777776543 2222211   4566777777777777777777777777776544     2


Q ss_pred             HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc-CCChhHHHHHH-HHHHhhcc
Q 003008          502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE-SLDPSIELTGN-VIEAAVSE  579 (858)
Q Consensus       502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~-s~d~~v~~~a~-~l~~L~~~  579 (858)
                      -..+++.|..++.+++  ..++..+..+|..++..   ..  ..+.   .....+..+. ++|+.++..++ .+..++..
T Consensus       265 ~~~~~~~L~~lL~s~~--~nvr~~~L~~L~~l~~~---~~--~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  265 LQKAINPLIKLLSSSD--PNVRYIALDSLSQLAQS---NP--PAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             HHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHCCH---CH--HHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             HHhhHHHHHHHhhccc--chhehhHHHHHHHhhcc---cc--hhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence            2235677777776333  66777777777777762   10  0111   1222233334 67788888888 77777654


Q ss_pred             ccchhhhHhhccchhHHHHhh-cCCCHHHHHHHHHHHHHhhcCCcc-hHHHHhhchHHHHHHHHHhhhccCCCCCcCCCC
Q 003008          580 TTTSYGKVLDSVFIGRMIGIM-KTSYPDLQRKAASILEFITIIDPS-MDTIISADIESGLDAIFQQKALEDTDSDIEGRQ  657 (858)
Q Consensus       580 ~~~~~~~i~~~g~i~~L~~lL-~s~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~  657 (858)
                      ....       ..++.|...+ ...+++++..++..+..++..... ...+        +..++  +             
T Consensus       335 ~n~~-------~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~--------v~~l~--~-------------  384 (526)
T PF01602_consen  335 SNVK-------EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWY--------VDTLL--K-------------  384 (526)
T ss_dssp             HHHH-------HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHH--------HHHHH--H-------------
T ss_pred             cchh-------hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHH--------HHHHH--H-------------
Confidence            4433       2467778888 455888999999999888753321 1111        22222  1             


Q ss_pred             CCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCcc
Q 003008          658 PEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENP  737 (858)
Q Consensus       658 ~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  737 (858)
                                              ++.....   .-...++..+..++.. .|                         +.
T Consensus       385 ------------------------ll~~~~~---~~~~~~~~~i~~ll~~-~~-------------------------~~  411 (526)
T PF01602_consen  385 ------------------------LLEISGD---YVSNEIINVIRDLLSN-NP-------------------------EL  411 (526)
T ss_dssp             ------------------------HHHCTGG---GCHCHHHHHHHHHHHH-ST-------------------------TT
T ss_pred             ------------------------hhhhccc---cccchHHHHHHHHhhc-Ch-------------------------hh
Confidence                                    1111110   0111122222222210 00                         00


Q ss_pred             chhhhhhhcchHHHHHHhc-cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008          738 INMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL  816 (858)
Q Consensus       738 ~~~~i~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL  816 (858)
                            ...++..+++.+. ..+++++..++|.++.......  +..  .-...++.+++.....++.+|...+.++..+
T Consensus       412 ------~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~--~~~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl  481 (526)
T PF01602_consen  412 ------REKILKKLIELLEDISSPEALAAAIWILGEYGELIE--NTE--SAPDILRSLIENFIEESPEVKLQILTALAKL  481 (526)
T ss_dssp             ------HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT--TTT--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCccc--ccc--cHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence                  1235788888887 6888999999999988654321  100  0011124444445566788999999999998


Q ss_pred             hcCcc---chHHHHHcCchHHHHHhhh--cCChhH-HHHHHHHh
Q 003008          817 SMDSE---NHSAIIAAGAVPALRRIVL--SQRPQW-TRALRLLR  854 (858)
Q Consensus       817 ~~~~~---~~~~i~~~g~v~~L~~ll~--~~~~~~-~~al~~l~  854 (858)
                      ....+   ...     -+...+..+..  +.++++ ++|...++
T Consensus       482 ~~~~~~~~~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~  520 (526)
T PF01602_consen  482 FKRNPENEVQN-----EILQFLLSLATEDSSDPEVRDRAREYLR  520 (526)
T ss_dssp             HHHSCSTTHHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred             HhhCCchhhHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            65433   222     23557777777  889999 88887554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.21  E-value=9.9e-09  Score=112.88  Aligned_cols=449  Identities=15%  Similarity=0.088  Sum_probs=262.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCc-hhHH
Q 003008          105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSIN-VYRD  181 (858)
Q Consensus       105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~-~~~~  181 (858)
                      ..+..++  ..|++....++.-..|++.+...++..++ +.|+++.+..+++..  .++.....+.++..+...+ +...
T Consensus        13 ~~l~~L~--~~dpe~lvrai~~~kN~vig~~~~K~~~i-k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~   89 (678)
T KOG1293|consen   13 DLLYRLL--HLDPEQLVRAIYMSKNLVIGFTDNKETNI-KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVD   89 (678)
T ss_pred             HHHHhhh--cCCHHHHHHHHHHhcchhhcCCCccchhh-hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHH
Confidence            3344454  57778888899999999887777666677 799999999998765  4556656777777776654 6888


Q ss_pred             HHHhcCcHHHHHHHhcCCCCC-HHHHHHHHHHHHHhccCcch---HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008          182 LVAECGAIEEITGLLTRPSLT-SEVKEQSMCTLWNLSVDKKH---RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL  257 (858)
Q Consensus       182 ~i~~~g~i~~Lv~lL~~~~~~-~~~~~~a~~~L~nLs~~~~~---~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL  257 (858)
                      .+.+.+.++.|.+++...  | ..+++.+++.+.++-.....   ....-....+..+.-+...+.+.....-+-...++
T Consensus        90 svL~~~~ll~Ll~LLs~s--D~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~  167 (678)
T KOG1293|consen   90 SVLRIIELLKLLQLLSES--DSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHL  167 (678)
T ss_pred             HHHHHhhHHHHHHHhcCc--chHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccc
Confidence            899999999999999998  7 67889999999998655433   23332444455554444435555556666666777


Q ss_pred             cCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHH---HHhcCh-hhHH----HHHHcCCccc-ccccccccc
Q 003008          258 ALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI---ELAKDD-YYRI----LIIEEGLVPV-PMVGADAYK  328 (858)
Q Consensus       258 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~---nl~~~~-~~~~----~i~~~g~v~~-~Lv~ll~~~  328 (858)
                      +...+.+..+..+|+.+.+.-++...   +-..|..|...+.   ++..++ ....    ...+.|..+. ..-+     
T Consensus       168 s~~~~hq~Il~Na~i~ekI~~l~~~~---s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~r-----  239 (678)
T KOG1293|consen  168 SSTKDHQLILCNAGILEKINILLMYL---SSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTR-----  239 (678)
T ss_pred             cccchhhheeccccchhhHHHHHHhh---hHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhh-----
Confidence            77787777888889888887776543   2237778888887   555543 2221    1222333321 0111     


Q ss_pred             cCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCC
Q 003008          329 SFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSE  408 (858)
Q Consensus       329 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~  408 (858)
                                       +.+..+...+-.++.++.+.                          .+.+..           
T Consensus       240 -----------------L~k~~~~s~~l~sl~cl~~~--------------------------~~~s~~-----------  265 (678)
T KOG1293|consen  240 -----------------LLKDPDFSERLRSLECLVPY--------------------------LRKSFN-----------  265 (678)
T ss_pred             -----------------hhhCCCccHHHHHHHHHHHH--------------------------Hhcccc-----------
Confidence                             11111111121222223222                          111100           


Q ss_pred             CCccccccc-cccccc-----HHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcC------C
Q 003008          409 FPIDRQLTL-LPWIDG-----VARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDH------S  475 (858)
Q Consensus       409 ~~~~~~~~~-l~~~~~-----i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~------~  475 (858)
                        .+..+.. +..+.+     .-..+.+...|-......++..-+..+ .-+..+....+...++.+..++.-      .
T Consensus       266 --~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~  343 (678)
T KOG1293|consen  266 --YDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAAS  343 (678)
T ss_pred             --ccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhc
Confidence              0000000 000000     000111112221111122222222222 223344455566666666666542      2


Q ss_pred             cHHHHHHHH---HHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc-cccccccC
Q 003008          476 SDAVRLATT---HALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK-SKFYDIPV  549 (858)
Q Consensus       476 ~~~v~~~a~---~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~i~~~  549 (858)
                      .++.+.-++   ..+...+.  .-.+++.+.+.-....+..+.  +..|......++.|+.+++..   .. .+...-..
T Consensus       344 ~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~--~~kd~~~~aaa~l~~~s~srs---V~aL~tg~~~~  418 (678)
T KOG1293|consen  344 DEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLP--PIKDHDFVAAALLCLKSFSRS---VSALRTGLKRN  418 (678)
T ss_pred             chhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccc--ccccHHHHHHHHHHHHHHHHH---HHHHHcCCccc
Confidence            222222211   12222222  123344444433333333333  344577788888888777651   11 11113446


Q ss_pred             cCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH
Q 003008          550 NGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDT  627 (858)
Q Consensus       550 ~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~  627 (858)
                      ++..+++.++..++..+...++ +|+|++-++.+-+..+++.|+|..+...+.+.++..+..++|+|+++..+.+....
T Consensus       419 dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k  497 (678)
T KOG1293|consen  419 DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK  497 (678)
T ss_pred             hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence            7899999999888888888888 99999876655448899999999999999999999999999999998766655443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.19  E-value=2.8e-09  Score=116.21  Aligned_cols=348  Identities=13%  Similarity=0.116  Sum_probs=233.3

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHh----cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQF----SGCINLTVNLLRSESSAACEAAAGLLRSISSI  176 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~----~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~  176 (858)
                      ...+..++++|+.....++..+.+.-+..+....+.....+...    .+....++.+|..++.-+...++..|..|...
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence            56778899999766777888888888888887766654344421    35678889999999989999999999999643


Q ss_pred             c-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHH
Q 003008          177 N-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGV  253 (858)
Q Consensus       177 ~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~  253 (858)
                      . .........-...-+...++++. +...+..++.+|.+|...+..|..+.+.++++.|+.+|+..  +..++.+++-+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            2 21111110112344556666542 56778888999999999999999999888999999999864  45788999999


Q ss_pred             HHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-------hhHHHHHHcCCcccccccccc
Q 003008          254 LANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD-------YYRILIIEEGLVPVPMVGADA  326 (858)
Q Consensus       254 L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-------~~~~~i~~~g~v~~~Lv~ll~  326 (858)
                      ++-|++.++....+.+.+.|+.|+++++...  -+++.+-++.+|.||...+       .....+++.|..+  +++.+.
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~--KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~--~l~~L~  286 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKEST--KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK--TLQSLE  286 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH--HHHHHh
Confidence            9999999887777777899999999997642  2457788999999999832       2445778888777  455442


Q ss_pred             cccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHH--HHhhcccccCCCC
Q 003008          327 YKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFL--VRIGAIESEDGRK  404 (858)
Q Consensus       327 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L--~~~~~~~~~~~~~  404 (858)
                      .+.++.                    +...+....|...-         +..++.+-.  =.++.  +.+|..+      
T Consensus       287 ~rk~~D--------------------edL~edl~~L~e~L---------~~~~k~lts--fD~Y~~El~sg~L~------  329 (429)
T cd00256         287 QRKYDD--------------------EDLTDDLKFLTEEL---------KNSVQDLSS--FDEYKSELRSGRLH------  329 (429)
T ss_pred             cCCCCc--------------------HHHHHHHHHHHHHH---------HHHHHHcCC--HHHHHHHHhcCCcc------
Confidence            222211                    11111111111100         000000000  00000  0111000      


Q ss_pred             CCCCCCccccc-----ccccccc--cHHHHHHHh-CCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCC
Q 003008          405 PQSEFPIDRQL-----TLLPWID--GVARLVLIL-GLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHS  475 (858)
Q Consensus       405 ~~l~~~~~~~~-----~~l~~~~--~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~  475 (858)
                       =.-.+.+..|     ..+-..+  .++.|+.+| ++.|+.+..-||.=++... ..|+.|..+-+.|+=..++.|+.++
T Consensus       330 -WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~  408 (429)
T cd00256         330 -WSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE  408 (429)
T ss_pred             -CCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC
Confidence             0000111112     1111222  678899999 4678899999999999955 6788888888999999999999999


Q ss_pred             cHHHHHHHHHHHHHhh
Q 003008          476 SDAVRLATTHALERLS  491 (858)
Q Consensus       476 ~~~v~~~a~~aL~~Ls  491 (858)
                      +++||.+|..|+..|-
T Consensus       409 d~~Vr~eAL~avQklm  424 (429)
T cd00256         409 DPNVRYEALLAVQKLM  424 (429)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999998774

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.18  E-value=4.8e-10  Score=102.66  Aligned_cols=114  Identities=27%  Similarity=0.355  Sum_probs=105.7

Q ss_pred             hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc-
Q 003008          144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSI-NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK-  221 (858)
Q Consensus       144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~-  221 (858)
                      +.|+++.+++++.+++...+..++++|.+++.. ++.+..+.+.|+++.++++++++  ++.++..++++|+||+.++. 
T Consensus         5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcHH
Confidence            799999999999999999999999999999987 57888899999999999999997  99999999999999998774 


Q ss_pred             hHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008          222 HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL  259 (858)
Q Consensus       222 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~  259 (858)
                      .+..+.+.|+++.|++++..++.++++.++++|.+|+.
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            56777789999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.14  E-value=1.9e-09  Score=117.46  Aligned_cols=313  Identities=15%  Similarity=0.098  Sum_probs=208.6

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHh-cCChhhHHHHHHcCcHHHHHHhhcCC-cHHHHHHHHHHHHHhhcChhHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADI-SINEHMRMLFKEAGAIKYLVKLLDHS-SDAVRLATTHALERLSVSRGVCQIM  500 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l-~~~~~~~~~l~~~g~i~~Lv~LL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~l  500 (858)
                      ...+++.+|+.+|..++..++..|..+ +............-....|...+++. +...+..++.+|..|...++.|..+
T Consensus       102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f  181 (429)
T cd00256         102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF  181 (429)
T ss_pred             chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence            567788899999999999999999994 43333222111122445666777654 4777888889999999999999999


Q ss_pred             HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccc
Q 003008          501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSET  580 (858)
Q Consensus       501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~  580 (858)
                      .+.++++.|+.+|+....+.+++..+..|+|-++..   ..                                       
T Consensus       182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~---~~---------------------------------------  219 (429)
T cd00256         182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN---PH---------------------------------------  219 (429)
T ss_pred             HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc---HH---------------------------------------
Confidence            999999999999985444678999999999999871   11                                       


Q ss_pred             cchhhhHhhccchhHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcc---hHHHHhhchHHHHHHHHHhhhccCCCCCcCCC
Q 003008          581 TTSYGKVLDSVFIGRMIGIMKTS-YPDLQRKAASILEFITIIDPS---MDTIISADIESGLDAIFQQKALEDTDSDIEGR  656 (858)
Q Consensus       581 ~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~  656 (858)
                       .. ..+.+.+.|+.|+++++.. -..+.+-++.+|.|+...+..   ...+...-...|+..++  ..|....|++++.
T Consensus       220 -~~-~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l--~~L~~rk~~DedL  295 (429)
T cd00256         220 -AA-EVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTL--QSLEQRKYDDEDL  295 (429)
T ss_pred             -HH-HhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHH--HHHhcCCCCcHHH
Confidence             11 3334467889999999754 456889999999999874321   11111111333566666  7788888877766


Q ss_pred             CCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCc--hhhHHHHHHHhhcccCCCCCCC
Q 003008          657 QPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLH--YKDWVAACLVKLSCLSGPDQDF  734 (858)
Q Consensus       657 ~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~  734 (858)
                      .+|+..+.-        .-......+-+|+++.......        .+ .+.|.+  .+-|.+.+ .++          
T Consensus       296 ~edl~~L~e--------~L~~~~k~ltsfD~Y~~El~sg--------~L-~WSp~H~se~FW~EN~-~kf----------  347 (429)
T cd00256         296 TDDLKFLTE--------ELKNSVQDLSSFDEYKSELRSG--------RL-HWSPVHKSEKFWRENA-DRL----------  347 (429)
T ss_pred             HHHHHHHHH--------HHHHHHHHcCCHHHHHHHHhcC--------Cc-cCCCCCCCchHHHHHH-HHH----------
Confidence            555444211        0112223445565553221111        11 133333  23332221 011          


Q ss_pred             CccchhhhhhhcchHHHHHHhc-cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHH
Q 003008          735 ENPINMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAIL  813 (858)
Q Consensus       735 ~~~~~~~i~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL  813 (858)
                          .  .-+...+..|+++|. +.++.+..-||.=++.++...+. ....+-+.|+=..+++++++++++||..|+.|+
T Consensus       348 ----~--~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~av  420 (429)
T cd00256         348 ----N--EKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAV  420 (429)
T ss_pred             ----H--hcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence                0  012345789999995 77888888899999998877754 555677889988899999999999999999998


Q ss_pred             Hhh
Q 003008          814 YNL  816 (858)
Q Consensus       814 ~nL  816 (858)
                      -.|
T Consensus       421 Qkl  423 (429)
T cd00256         421 QKL  423 (429)
T ss_pred             HHH
Confidence            654

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.10  E-value=1.6e-09  Score=99.26  Aligned_cols=117  Identities=32%  Similarity=0.430  Sum_probs=104.4

Q ss_pred             HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008          182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS  260 (858)
Q Consensus       182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~  260 (858)
                      .+.+.|+++.++++++++  ++.+++.++++|.+++.+ ++.+..+.+.|+++.+++++.++++.++..++++|.|++..
T Consensus         2 ~~~~~~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS--DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHcCChHHHHHHHHcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence            467889999999999998  899999999999999987 77888889999999999999999999999999999999988


Q ss_pred             cC-chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008          261 KS-NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK  303 (858)
Q Consensus       261 ~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~  303 (858)
                      .. .+..+.+.|+++.|++++..+   ...+++.+..+|++|+.
T Consensus        80 ~~~~~~~~~~~g~l~~l~~~l~~~---~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          80 PEDNKLIVLEAGGVPKLVNLLDSS---NEDIQKNATGALSNLAS  120 (120)
T ss_pred             cHHHHHHHHHCCChHHHHHHHhcC---CHHHHHHHHHHHHHhhC
Confidence            64 455678889999999999775   34588999999999973

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.10  E-value=1e-07  Score=111.63  Aligned_cols=396  Identities=16%  Similarity=0.160  Sum_probs=236.0

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD  181 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~  181 (858)
                      -+.+.+++++. +.|...+.-+..++..+...+...  .++    ++..+.+-|.++++.++..|+++|.++... +..+
T Consensus        42 ~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~--~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-~~~~  113 (526)
T PF01602_consen   42 FLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPEL--LIL----IINSLQKDLNSPNPYIRGLALRTLSNIRTP-EMAE  113 (526)
T ss_dssp             STHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHH--HHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-HHHH
T ss_pred             hHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhH--HHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhccc-chhh
Confidence            45567888887 888888888877777777655541  222    567777888999999999999999998843 3222


Q ss_pred             HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008          182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS  260 (858)
Q Consensus       182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~  260 (858)
                      .     .++.+.+++.++  ++.+|+.|+.++..+... ++.   +... .++.+.+++.+.++.++..|+.++..+...
T Consensus       114 ~-----l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~  182 (526)
T PF01602_consen  114 P-----LIPDVIKLLSDP--SPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCN  182 (526)
T ss_dssp             H-----HHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCT
T ss_pred             H-----HHHHHHHHhcCC--chHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccC
Confidence            2     478889999998  999999999999998743 332   1122 589999999999999999999999999111


Q ss_pred             cCchHHHHhCCCHHHHHHHHccC-CCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCC
Q 003008          261 KSNHNILVEAGVIPKLAMLLKAN-VEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWP  338 (858)
Q Consensus       261 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~  338 (858)
                      +.  . ..  ..++.++..|..- ...++-.+..+++.|..++.. +.....   ...+. .+..++             
T Consensus       183 ~~--~-~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~-~l~~~l-------------  240 (526)
T PF01602_consen  183 DD--S-YK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIE-PLLNLL-------------  240 (526)
T ss_dssp             HH--H-HT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHH-HHHHHH-------------
T ss_pred             cc--h-hh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHH-HHHHHh-------------
Confidence            11  1 00  3344444433210 112455777777777777763 332211   11222 133321             


Q ss_pred             CCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccc
Q 003008          339 SLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLL  418 (858)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l  418 (858)
                               +..+..+..+++.++..+....                                              .  
T Consensus       241 ---------~s~~~~V~~e~~~~i~~l~~~~----------------------------------------------~--  263 (526)
T PF01602_consen  241 ---------QSSSPSVVYEAIRLIIKLSPSP----------------------------------------------E--  263 (526)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHSSSH----------------------------------------------H--
T ss_pred             ---------hccccHHHHHHHHHHHHhhcch----------------------------------------------H--
Confidence                     1111233444444444432111                                              0  


Q ss_pred             cccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHH
Q 003008          419 PWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQ  498 (858)
Q Consensus       419 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~  498 (858)
                      ....++++|+.+|.++++.++..++..|..++...  ...+.  ..-..+..+..+++..+|..+...|.+++.... ..
T Consensus       264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n-~~  338 (526)
T PF01602_consen  264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESN-VK  338 (526)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH-HH
T ss_pred             HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccc-hh
Confidence            11225677888888888888888888888866433  11222  222223333347778888888888888885332 22


Q ss_pred             HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008          499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAV  577 (858)
Q Consensus       499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~  577 (858)
                      .     .++.|...+... .+.++++.+...+..++.   ......    .-.++.+++++...+..+...+. .+.++.
T Consensus       339 ~-----Il~eL~~~l~~~-~d~~~~~~~i~~I~~la~---~~~~~~----~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll  405 (526)
T PF01602_consen  339 E-----ILDELLKYLSEL-SDPDFRRELIKAIGDLAE---KFPPDA----EWYVDTLLKLLEISGDYVSNEIINVIRDLL  405 (526)
T ss_dssp             H-----HHHHHHHHHHHC---HHHHHHHHHHHHHHHH---HHGSSH----HHHHHHHHHHHHCTGGGCHCHHHHHHHHHH
T ss_pred             h-----HHHHHHHHHHhc-cchhhhhhHHHHHHHHHh---ccCchH----HHHHHHHHHhhhhccccccchHHHHHHHHh
Confidence            2     356666666322 236688888888877775   221110    11356677777766555555555 566555


Q ss_pred             ccccchhhhHhhccchhHHHHhhcC-CCHHHHHHHHHHHHHh
Q 003008          578 SETTTSYGKVLDSVFIGRMIGIMKT-SYPDLQRKAASILEFI  618 (858)
Q Consensus       578 ~~~~~~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l  618 (858)
                      ......     ....+..|++++.+ .++.+...++|+++..
T Consensus       406 ~~~~~~-----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy  442 (526)
T PF01602_consen  406 SNNPEL-----REKILKKLIELLEDISSPEALAAAIWILGEY  442 (526)
T ss_dssp             HHSTTT-----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHH
T ss_pred             hcChhh-----hHHHHHHHHHHHHHhhHHHHHHHHHhhhccc
Confidence            433221     01235566666654 4555666666666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=1.3e-07  Score=110.86  Aligned_cols=459  Identities=16%  Similarity=0.138  Sum_probs=255.8

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc-h
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN-V  178 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~-~  178 (858)
                      ...++.|..++.++.|+++|.-|+--++++...-......-. +.-.-..|+....++ .+.+|..-+.++..++.+. +
T Consensus        35 ~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~-~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~  113 (1075)
T KOG2171|consen   35 EPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV-QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLP  113 (1075)
T ss_pred             cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence            337888999998788999999988788877654222211222 233345555555544 6778888999999998865 2


Q ss_pred             hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch--HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008          179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH--RLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN  256 (858)
Q Consensus       179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n  256 (858)
                      .    ...+.++.|.+..+++  ++..++.|..+|+++...-++  +..+  ....+.+.+.+..++..++..+++++..
T Consensus       114 e----~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~vr~~a~rA~~a  185 (1075)
T KOG2171|consen  114 E----KWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSPVRVAAVRALGA  185 (1075)
T ss_pred             c----chHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence            2    3456789999999998  999999999999999754333  3322  1234455555666655599999999998


Q ss_pred             HcCCc-CchHHHHhC-CCHHHHHHHHcc----CCCCCHHHHHHHHHHHHHHhcC-hhh--------------------HH
Q 003008          257 LALSK-SNHNILVEA-GVIPKLAMLLKA----NVEGSKVIRKEARNALIELAKD-DYY--------------------RI  309 (858)
Q Consensus       257 L~~~~-~~~~~i~~~-g~i~~Lv~ll~~----~~~~~~~~~~~a~~aL~nl~~~-~~~--------------------~~  309 (858)
                      ++... .++...... ..+|.++..+..    ++++   .-..+..+|-.+... +..                    ..
T Consensus       186 ~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~---~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~  262 (1075)
T KOG2171|consen  186 FAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDD---AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELE  262 (1075)
T ss_pred             HHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchH---HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccccc
Confidence            87654 333322221 235555554432    2211   112333333333321 110                    11


Q ss_pred             HHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhc----cCCCC--CCcc-chHH--HHh
Q 003008          310 LIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLG----LNVSD--KNAN-IDEA--KMN  380 (858)
Q Consensus       310 ~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~n----L~~~~--~~~~-i~~~--~~~  380 (858)
                      ..++.-++. .++.+..+            -|.   ..|... +-.....-.+..    +..++  .|.+ .++.  ..+
T Consensus       263 ~~~R~~ALe-~ivs~~e~------------Ap~---~~k~~~-~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~  325 (1075)
T KOG2171|consen  263 NSIRHLALE-FLVSLSEY------------APA---MCKKLA-LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETP  325 (1075)
T ss_pred             HHHHHHHHH-HHHHHHHh------------hHH---Hhhhch-hhhccHHHHHHHhcCCcccchhhccccccccccccCc
Confidence            112222222 13322100            000   111111 111111111212    21110  0100 1111  111


Q ss_pred             hhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHH
Q 003008          381 AMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLF  459 (858)
Q Consensus       381 ~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l  459 (858)
                      ..++   .+.+-|...           .-+++..     -.-.++.+-.+|.++++.-|..+..+|+-++ ++.+.-...
T Consensus       326 ~~~A---~~~lDrlA~-----------~L~g~~v-----~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~  386 (1075)
T KOG2171|consen  326 YRAA---EQALDRLAL-----------HLGGKQV-----LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN  386 (1075)
T ss_pred             HHHH---HHHHHHHHh-----------cCChhhe-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            1111   111222210           0011111     0113455667889999999999999999965 666655443


Q ss_pred             HHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCC
Q 003008          460 KEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPS  537 (858)
Q Consensus       460 ~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~  537 (858)
                      . ...++..+..|.++++.||.+|+.|++-++.  .++..+. ..+-.++.|+..+. ......++.+|+.++-|++..+
T Consensus       387 l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld-~~~~~rV~ahAa~al~nf~E~~  463 (1075)
T KOG2171|consen  387 L-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLD-STQNVRVQAHAAAALVNFSEEC  463 (1075)
T ss_pred             H-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhc-ccCchHHHHHHHHHHHHHHHhC
Confidence            3 5678888999999999999999999999998  3443333 34456778888887 4445789999999999998722


Q ss_pred             cccccccccccC--cCcH-HHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhh--ccchhHHHHhhcCCC-HHHHHH
Q 003008          538 KEMKSKFYDIPV--NGSE-KGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLD--SVFIGRMIGIMKTSY-PDLQRK  610 (858)
Q Consensus       538 ~~~~~~~~i~~~--~~i~-~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~--~g~i~~L~~lL~s~~-~~v~~~  610 (858)
                         . +..+.+.  +.+. .+..++.++.+.++..++ +|...+...+.   .+..  .-.+|.|..+|.+.+ .+.+..
T Consensus       464 ---~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~---~F~pY~d~~Mp~L~~~L~n~~~~d~r~L  536 (1075)
T KOG2171|consen  464 ---D-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE---KFIPYFDRLMPLLKNFLQNADDKDLREL  536 (1075)
T ss_pred             ---c-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh---hhHhHHHHHHHHHHHHHhCCCchhhHHH
Confidence               2 1111111  1222 233355667788888888 88776643332   2222  235688888887655 344333


Q ss_pred             HHHHHHH
Q 003008          611 AASILEF  617 (858)
Q Consensus       611 a~~~L~~  617 (858)
                      ..+++.+
T Consensus       537 rgktmEc  543 (1075)
T KOG2171|consen  537 RGKTMEC  543 (1075)
T ss_pred             HhhHHHH
Confidence            3333333

>PTZ00429 beta-adaptin; Provisional

Probab=98.95  E-value=3.7e-05  Score=90.76  Aligned_cols=400  Identities=14%  Similarity=0.094  Sum_probs=249.9

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHH-HHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVE-ALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY  179 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~-~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~  179 (858)
                      .|-+..|-+.|. +.+...+..+++ .+..++.+.+.        ....+.+++++.+.+.+.|.-..-.|.+.+..++.
T Consensus        31 kge~~ELr~~L~-s~~~~~kk~alKkvIa~mt~G~Dv--------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe  101 (746)
T PTZ00429         31 RGEGAELQNDLN-GTDSYRKKAAVKRIIANMTMGRDV--------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE  101 (746)
T ss_pred             cchHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCCc--------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH
Confidence            566777888887 766666666665 55666665442        23456777889999999999888888888774432


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008          180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL  259 (858)
Q Consensus       180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~  259 (858)
                      ...+    ++..+.+=+.++  |+.++-.|+++|+++-...     +++ -.++++.+.+.+.++-||..|+-++.++..
T Consensus       102 lalL----aINtl~KDl~d~--Np~IRaLALRtLs~Ir~~~-----i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~  169 (746)
T PTZ00429        102 KALL----AVNTFLQDTTNS--SPVVRALAVRTMMCIRVSS-----VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFH  169 (746)
T ss_pred             HHHH----HHHHHHHHcCCC--CHHHHHHHHHHHHcCCcHH-----HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            2222    477888888887  9999999999998865522     211 235677788888999999999999999976


Q ss_pred             CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCC
Q 003008          260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPS  339 (858)
Q Consensus       260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~  339 (858)
                      .+.  ..+.+.|.++.|.++|...   .+.+..+|+.+|..++.....+-. ...+.+.. |+..+              
T Consensus       170 ~~p--elv~~~~~~~~L~~LL~D~---dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~-Ll~~L--------------  228 (746)
T PTZ00429        170 DDM--QLFYQQDFKKDLVELLNDN---NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNR-LVYHL--------------  228 (746)
T ss_pred             hCc--ccccccchHHHHHHHhcCC---CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHH-HHHHh--------------
Confidence            433  2334567888999988654   445888999999999864221111 11111221 22211              


Q ss_pred             CCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccc
Q 003008          340 LPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLP  419 (858)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~  419 (858)
                              ...+.+.+.....+|....-.+                                          +.   .  
T Consensus       229 --------~e~~EW~Qi~IL~lL~~y~P~~------------------------------------------~~---e--  253 (746)
T PTZ00429        229 --------PECNEWGQLYILELLAAQRPSD------------------------------------------KE---S--  253 (746)
T ss_pred             --------hcCChHHHHHHHHHHHhcCCCC------------------------------------------cH---H--
Confidence                    0111133333333332210000                                          00   0  


Q ss_pred             ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--hhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhH
Q 003008          420 WIDGVARLVLILGLEDERAIARAAESIADISIN--EHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGV  496 (858)
Q Consensus       420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~  496 (858)
                      ....+..+...|++.++.|...|++++.++...  ++....+. .....+|+.|+ ++++++|..+...+.-+.. .+  
T Consensus       254 ~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P--  329 (746)
T PTZ00429        254 AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIFP--  329 (746)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCH--
Confidence            012566677888999999999999999997643  22222211 22346777775 5678899998888777765 32  


Q ss_pred             HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008          497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEA  575 (858)
Q Consensus       497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~  575 (858)
                       ..+...  +..+.-.   .+++..++.....+|..++..   ....      ..+.-|..+..+.|.+....++ ++..
T Consensus       330 -~lf~~~--~~~Ff~~---~~Dp~yIK~~KLeIL~~Lane---~Nv~------~IL~EL~eYa~d~D~ef~r~aIrAIg~  394 (746)
T PTZ00429        330 -NLLRTN--LDSFYVR---YSDPPFVKLEKLRLLLKLVTP---SVAP------EILKELAEYASGVDMVFVVEVVRAIAS  394 (746)
T ss_pred             -HHHHHH--HHhhhcc---cCCcHHHHHHHHHHHHHHcCc---ccHH------HHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence             222221  2222222   334456899999999999872   1111      1245666777778888888888 8888


Q ss_pred             hhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008          576 AVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID  622 (858)
Q Consensus       576 L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~  622 (858)
                      ++......     -...+..|+++++.... +...++.++.++....
T Consensus       395 lA~k~~~~-----a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrky  435 (746)
T PTZ00429        395 LAIKVDSV-----APDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKY  435 (746)
T ss_pred             HHHhChHH-----HHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHC
Confidence            87543321     12356778888876544 3445677776665433

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=9.1e-06  Score=95.70  Aligned_cols=259  Identities=12%  Similarity=0.132  Sum_probs=165.3

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc------Cc
Q 003008          147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV------DK  220 (858)
Q Consensus       147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~------~~  220 (858)
                      .+..|+.-|.+.|.++|.+|-.+|.++.....         .++.|..++.... +++++-.|+-.++.|+.      +.
T Consensus         5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~-~p~~Rq~aaVl~Rkl~~~~w~~l~~   74 (1075)
T KOG2171|consen    5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSA-DPQVRQLAAVLLRKLLTKHWSRLSA   74 (1075)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhcCCH
Confidence            34566677777888889999999998877553         6889999988864 99999999988888863      33


Q ss_pred             chHHHHHhCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 003008          221 KHRLKIANTDILPLLIKSL-EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI  299 (858)
Q Consensus       221 ~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~  299 (858)
                      +.|..|     -..|+..+ +...+.++..-+.+++.++.+.-.-   -..+.++.|.+..++++.   ..|+.|..+|+
T Consensus        75 e~~~si-----ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~---~~rE~al~il~  143 (1075)
T KOG2171|consen   75 EVQQSI-----KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNP---SLRESALLILS  143 (1075)
T ss_pred             HHHHHH-----HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCc---chhHHHHHHHH
Confidence            344444     23455554 4457889999999999998764222   334556677777766643   38889988888


Q ss_pred             HHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHH
Q 003008          300 ELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM  379 (858)
Q Consensus       300 nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~  379 (858)
                      .+...=.+.            +..+                                                      +
T Consensus       144 s~~~~~~~~------------~~~~------------------------------------------------------~  157 (1075)
T KOG2171|consen  144 SLPETFGNT------------LQPH------------------------------------------------------L  157 (1075)
T ss_pred             hhhhhhccc------------cchh------------------------------------------------------H
Confidence            776420000            0000                                                      0


Q ss_pred             hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CC---hhh
Q 003008          380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-IN---EHM  455 (858)
Q Consensus       380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~---~~~  455 (858)
                      ..                                         ..+-+.+-+.+++..++..+++++.... ..   ...
T Consensus       158 ~~-----------------------------------------l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~  196 (1075)
T KOG2171|consen  158 DD-----------------------------------------LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE  196 (1075)
T ss_pred             HH-----------------------------------------HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence            00                                         1111222334444448888888888843 22   222


Q ss_pred             HHHHHH--cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhH-HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHH
Q 003008          456 RMLFKE--AGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGV-CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILG  531 (858)
Q Consensus       456 ~~~l~~--~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~-~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~  531 (858)
                      +..+..  .+.+..+-..+..++.+.-..+..+|..+.. .+.. +..+.  ..|...+.+..+.+-++.+|..|..+|.
T Consensus       197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~iv  274 (1075)
T KOG2171|consen  197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLV  274 (1075)
T ss_pred             HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            333322  2344444455666777778888888888887 3443 33333  2456666677767777889999999988


Q ss_pred             HhcC
Q 003008          532 RILD  535 (858)
Q Consensus       532 ~l~~  535 (858)
                      .++.
T Consensus       275 s~~e  278 (1075)
T KOG2171|consen  275 SLSE  278 (1075)
T ss_pred             HHHH
Confidence            8876

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=9.3e-06  Score=89.59  Aligned_cols=429  Identities=16%  Similarity=0.106  Sum_probs=230.5

Q ss_pred             CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh--HHHHHh---cCc
Q 003008          114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY--RDLVAE---CGA  188 (858)
Q Consensus       114 s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~--~~~i~~---~g~  188 (858)
                      +.++-+|...-..+.-+++...-+    . -..++|.|..+|.+.+...++-|..+|..++.+...  ......   .-.
T Consensus       101 d~~~lIr~tvGivITTI~s~~~~~----~-wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~m  175 (885)
T KOG2023|consen  101 DASPLIRATVGIVITTIASTGGLQ----H-WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIM  175 (885)
T ss_pred             CchHHHHhhhhheeeeeecccccc----c-chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHh
Confidence            445444544333344444433322    1 256899999999999999999999999999886531  111111   125


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHH
Q 003008          189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILV  268 (858)
Q Consensus       189 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~  268 (858)
                      +|.++++.+++  +|.++.+|+.++-..-......-...-...++.|..+-..+++++|.+.+.+|..|......|..=-
T Consensus       176 ipkfl~f~~h~--spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph  253 (885)
T KOG2023|consen  176 IPKFLQFFKHP--SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH  253 (885)
T ss_pred             HHHHHHHHhCC--ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc
Confidence            89999999998  9999999999886654433222222234567788888888899999999999999875543332111


Q ss_pred             hCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHH--cCCcccccccccccccCCccCCCCCCCCCcchh
Q 003008          269 EAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIE--EGLVPVPMVGADAYKSFRPELHSWPSLPDGTEI  346 (858)
Q Consensus       269 ~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~--~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~  346 (858)
                      -.+.++-+++.-+..   .+.+--.|+.....++..+..+..+..  ...+|. |++=+.|.+.+..|            
T Consensus       254 l~~IveyML~~tqd~---dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPv-Ll~~M~Ysd~D~~L------------  317 (885)
T KOG2023|consen  254 LDNIVEYMLQRTQDV---DENVALEACEFWLALAEQPICKEVLQPYLDKLIPV-LLSGMVYSDDDIIL------------  317 (885)
T ss_pred             hHHHHHHHHHHccCc---chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH-HHccCccccccHHH------------
Confidence            123344444443333   344667888888888888754444433  345554 55544444443321            


Q ss_pred             hcccCCchhhHHHHHHhccCCCCCCcc-chHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHH
Q 003008          347 ERTSQGPSKFGANELLLGLNVSDKNAN-IDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVA  425 (858)
Q Consensus       347 ~~~~~~~~~~~a~~aL~nL~~~~~~~~-i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~  425 (858)
                                      .+ ..+++... -.+.-+++=...++++....... + +|+.  +-+...++            
T Consensus       318 ----------------L~-~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~-~-eDdd--dDe~DDdD------------  364 (885)
T KOG2023|consen  318 ----------------LK-NNEEDESVPDREEDIKPRFHKSKEHGNGEDAD-D-EDDD--DDEDDDDD------------  364 (885)
T ss_pred             ----------------hc-CccccccCCchhhhccchhhhchhccCccccc-c-cccc--cccccccc------------
Confidence                            11 00110000 01111111111010000000000 0 0000  00000000            


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHc--
Q 003008          426 RLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAE--  503 (858)
Q Consensus       426 ~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~--  503 (858)
                            ...+..+|...+.+|--++.-  .+..+. .-..|.|-..|.++.-.+|+.++.||+.++.  .+-+-+...  
T Consensus       365 ------~~~dWNLRkCSAAaLDVLanv--f~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE--GcM~g~~p~Lp  433 (885)
T KOG2023|consen  365 ------AFSDWNLRKCSAAALDVLANV--FGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAE--GCMQGFVPHLP  433 (885)
T ss_pred             ------ccccccHhhccHHHHHHHHHh--hHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHH--HHhhhcccchH
Confidence                  012345666555555544320  000011 2245556666778889999999999999984  111112211  


Q ss_pred             CChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccc
Q 003008          504 GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTT  582 (858)
Q Consensus       504 g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~  582 (858)
                      ..||.|+.+|.  +..+-+|.-++|+|+..+.--........+  ...+..+++.+-+.+..|+..|| ++..+-.+...
T Consensus       434 eLip~l~~~L~--DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~  509 (885)
T KOG2023|consen  434 ELIPFLLSLLD--DKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE  509 (885)
T ss_pred             HHHHHHHHHhc--cCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc
Confidence            24677788887  444888999999998876410000010011  01244455556678899999999 77665433222


Q ss_pred             hhhhHhhccchhHHHHhhc----------CCCHHHHHHHHHHHHHhhcC
Q 003008          583 SYGKVLDSVFIGRMIGIMK----------TSYPDLQRKAASILEFITII  621 (858)
Q Consensus       583 ~~~~i~~~g~i~~L~~lL~----------s~~~~v~~~a~~~L~~l~~~  621 (858)
                      .        .+|.|-.+|.          ..|-.|..-|.++|+.-..+
T Consensus       510 e--------LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~  550 (885)
T KOG2023|consen  510 E--------LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH  550 (885)
T ss_pred             h--------hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence            1        2333333332          34555666777777765533

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.72  E-value=8.9e-08  Score=103.26  Aligned_cols=220  Identities=19%  Similarity=0.111  Sum_probs=159.7

Q ss_pred             CCcHHHHHHHhcCC-CCHHHHHHHHHHHHHcccCCcccHHHHHHh------cCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 003008          101 DSYVALFVQMLGLD-YDPLDREQAVEALWKYSLGGKKCIDYIMQF------SGCINLTVNLLRSESSAACEAAAGLLRSI  173 (858)
Q Consensus       101 ~g~i~~lv~lL~~s-~d~~~~~~a~~~L~~la~~~~~~~~~ii~~------~g~i~~Li~lL~~~~~~~~~~a~~aL~nL  173 (858)
                      .+....++++|+.. ++.++..+.+..+..+..+..... .++.+      .....++++++.++|..++..|+..|..|
T Consensus        54 ~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~-~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   54 DQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRV-ELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL  132 (312)
T ss_dssp             --------HHHHHH---HHHHHHHHHHHHHHHH-SSSSH-HHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            45566777877644 677899999999999988777654 34423      22688899999999999999999999999


Q ss_pred             hcCchhHHHHHhcCcHHHHHHHhcCCC--CCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHH-----ccC--CH
Q 003008          174 SSINVYRDLVAECGAIEEITGLLTRPS--LTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSL-----EDE--NM  244 (858)
Q Consensus       174 s~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll-----~~~--~~  244 (858)
                      ....+.+..-...+.++.++..+++..  .+...+..++.+|.+|...++.|..+.+.|+++.|+.++     ..+  +.
T Consensus       133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~  212 (312)
T PF03224_consen  133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI  212 (312)
T ss_dssp             HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred             HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence            776554443333566788888877632  134566889999999999999999999999999999999     222  55


Q ss_pred             HHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChh--hHHHHHHcCCcccccc
Q 003008          245 KVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY--YRILIIEEGLVPVPMV  322 (858)
Q Consensus       245 ~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~--~~~~i~~~g~v~~~Lv  322 (858)
                      .++.+++-++|-|+.+++....+.+.+.++.|+++++...  -+++.+-+..+|.||...+.  +...|+..|+++  ++
T Consensus       213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~--KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~--~l  288 (312)
T PF03224_consen  213 QLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI--KEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLK--TL  288 (312)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHH--HH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc--cchHHHHHHHHHHHHHhccHHHHHHHHHHccHHH--HH
Confidence            7889999999999999999999999999999999998753  45688899999999999654  899999999888  34


Q ss_pred             ccc
Q 003008          323 GAD  325 (858)
Q Consensus       323 ~ll  325 (858)
                      +.+
T Consensus       289 ~~L  291 (312)
T PF03224_consen  289 QNL  291 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.69  E-value=1.1e-06  Score=92.62  Aligned_cols=352  Identities=14%  Similarity=0.110  Sum_probs=225.6

Q ss_pred             cHHHHHHHhCCCC-HHHHHHHHHHHHHhcCChhhHHHHHH-------cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcCh
Q 003008          423 GVARLVLILGLED-ERAIARAAESIADISINEHMRMLFKE-------AGAIKYLVKLLDHSSDAVRLATTHALERLSVSR  494 (858)
Q Consensus       423 ~i~~Lv~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~l~~-------~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~  494 (858)
                      .+.+++.+++..+ ++....+...+..+-..+..+..++.       .-.-++.+++|...+.-+.....+.+..++...
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g  145 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG  145 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence            6778888887654 55566666666664443444443331       222556788998888888888888888887632


Q ss_pred             hHHHHHHHcCC-hHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCC--ChhHHHHHH
Q 003008          495 GVCQIMEAEGV-VHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESL--DPSIELTGN  571 (858)
Q Consensus       495 ~~~~~l~~~g~-i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~--d~~v~~~a~  571 (858)
                      ..+....+... ...|...+. ++++......+..||..+..   ....+..+...+|+..++..+.+.  +-.++...+
T Consensus       146 ~~~~~~~e~~~~~~~l~~~l~-~~~~~~~~~~~~rcLQ~ll~---~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  146 NCKMELSELDVYKGFLKEQLQ-SSTNNDYIQFAARCLQTLLR---VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             cccccchHHHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHhc---CcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            22211111111 223444555 33456677889999999998   666777788899999999988543  456677777


Q ss_pred             -HHHHhhccccchhhhHhhccchhHHHHhhcCCCH-HHHHHHHHHHHHhhcCCcchHHH---HhhchHHHHHHHHHhhhc
Q 003008          572 -VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYP-DLQRKAASILEFITIIDPSMDTI---ISADIESGLDAIFQQKAL  646 (858)
Q Consensus       572 -~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~-~v~~~a~~~L~~l~~~~~~~~~~---~~~~~~~gl~~l~~~~iL  646 (858)
                       |+.-|..++... +.+...+.|+.|.+++++... .|-+-++.++.|+...++.+...   .......++.+.+  ..|
T Consensus       222 fciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l--~~L  298 (442)
T KOG2759|consen  222 FCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTL--QSL  298 (442)
T ss_pred             HHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHH--HHH
Confidence             888887777666 777778999999999986654 58889999999998877533222   1111222233333  567


Q ss_pred             cCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchh--hHHHHHHHhh
Q 003008          647 EDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYK--DWVAACLVKL  724 (858)
Q Consensus       647 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~l~~l  724 (858)
                      ....|++|+..+|+..|.        ..-......|.+|+++.......        .+ .+.|.+.+  -|-+.+    
T Consensus       299 ~~rkysDEDL~~di~~L~--------e~L~~svq~LsSFDeY~sEl~sG--------~L-~WSP~Hk~e~FW~eNa----  357 (442)
T KOG2759|consen  299 EERKYSDEDLVDDIEFLT--------EKLKNSVQDLSSFDEYKSELRSG--------RL-EWSPVHKSEKFWRENA----  357 (442)
T ss_pred             HhcCCCcHHHHHHHHHHH--------HHHHHHHHhhccHHHHHHHHHhC--------Cc-CCCccccccchHHHhH----
Confidence            788888877655544431        11122334456666653221111        11 12232211  111100    


Q ss_pred             cccCCCCCCCCccchhhhhhhcchHHHHHHhc-cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCCh
Q 003008          725 SCLSGPDQDFENPINMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSN  803 (858)
Q Consensus       725 ~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~  803 (858)
                                   .+-..-....+..|+.+|+ +.++.+..-||.-+.......+. ....+-+-||=+.++++|+++++
T Consensus       358 -------------~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-gk~vv~k~ggKe~vM~Llnh~d~  423 (442)
T KOG2759|consen  358 -------------DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-GKAVVEKYGGKERVMNLLNHEDP  423 (442)
T ss_pred             -------------HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-HhHHHHHhchHHHHHHHhcCCCc
Confidence                         0000012346889999998 66688888899888888776665 66678889999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 003008          804 RAVEAGLAILYNL  816 (858)
Q Consensus       804 ~v~~~a~~aL~nL  816 (858)
                      +||-+|+.|+-.|
T Consensus       424 ~Vry~ALlavQ~l  436 (442)
T KOG2759|consen  424 EVRYHALLAVQKL  436 (442)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999988654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=5.3e-06  Score=93.81  Aligned_cols=396  Identities=15%  Similarity=0.071  Sum_probs=240.8

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCchhH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-ESSAACEAAAGLLRSISSINVYR  180 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~~~~  180 (858)
                      -.+|.|+.+|+.-.+.++...|+++|.+|+.--+... .++++.++||.|+.-|.. .-.++.++++.+|..|+..  .-
T Consensus       211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~-a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~  287 (1051)
T KOG0168|consen  211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS-AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HP  287 (1051)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh-heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--cc
Confidence            4578899999856688999999999999986433322 455689999999887754 4567889999999999874  45


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008          181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA  258 (858)
Q Consensus       181 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~  258 (858)
                      .+|.++|++...+..+.-.  ...+++.|+.+-.|.|..  ++.-..++  ..+|.|..+|...+....+.++-++..++
T Consensus       288 ~AiL~AG~l~a~LsylDFF--Si~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~  363 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFF--SIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIA  363 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            6789999999999998877  788999999999999843  33334443  35899999999999999999999999997


Q ss_pred             CCc---CchH-HHHhCCCHHHHHHHHccCCCC-CHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCc
Q 003008          259 LSK---SNHN-ILVEAGVIPKLAMLLKANVEG-SKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRP  332 (858)
Q Consensus       259 ~~~---~~~~-~i~~~g~i~~Lv~ll~~~~~~-~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~  332 (858)
                      ..-   ..+. .+...|.|....+|+.-.... +........+.|.-||.+ +-....+.+.++... |-.++.-.+..+
T Consensus       364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~-L~~il~g~s~s~  442 (1051)
T KOG0168|consen  364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADT-LKRILQGYSKSA  442 (1051)
T ss_pred             HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHH-HHHHHhccCcCc
Confidence            652   2333 678889999999887543111 111344667788888885 777788888887775 666642222211


Q ss_pred             cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCcc---chHHHHhhhhh----------------hhhhhHHHH
Q 003008          333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNAN---IDEAKMNAMVG----------------RSRQHFLVR  393 (858)
Q Consensus       333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~---i~~~~~~~li~----------------~~~~~~L~~  393 (858)
                      .       ....+.+-. ....++.....+..|........   ++.--+..++.                .+-+....|
T Consensus       443 n-------as~~~~l~r-~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~r  514 (1051)
T KOG0168|consen  443 N-------ASLHELLSR-SPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSR  514 (1051)
T ss_pred             c-------ccccccccc-CcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhh
Confidence            1       000001100 01222222222222211100000   00000000000                000000111


Q ss_pred             hhcccccCCC-CC----CCCCCccc--------ccccccccccHHHHHHHhCC-CCHHHHHHHHHHHHHh-c-CChhhHH
Q 003008          394 IGAIESEDGR-KP----QSEFPIDR--------QLTLLPWIDGVARLVLILGL-EDERAIARAAESIADI-S-INEHMRM  457 (858)
Q Consensus       394 ~~~~~~~~~~-~~----~l~~~~~~--------~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l-~-~~~~~~~  457 (858)
                      .-.-..++.. .+    .+..+++.        .++.. ..+.+|.|++..++ -++.|+.+|..+|..+ + .+.+.-.
T Consensus       515 i~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F-~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~  593 (1051)
T KOG0168|consen  515 IIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSF-GKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIG  593 (1051)
T ss_pred             hhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHH-HHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHH
Confidence            0000000000 00    01111111        00111 12367888888865 5899999999999993 2 3455444


Q ss_pred             H-HHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhc
Q 003008          458 L-FKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLK  514 (858)
Q Consensus       458 ~-l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~  514 (858)
                      . +.+...-..|-..|.+++..|.-.|....-.|..  .+..-..++++|++..+-+|..
T Consensus       594 slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  594 SLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            4 4455556677788888887777666666555555  3344567788888888877765

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.63  E-value=2e-06  Score=90.78  Aligned_cols=271  Identities=18%  Similarity=0.142  Sum_probs=195.4

Q ss_pred             HHHHhcCcHHHHHHHHccCCHHH--HHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc
Q 003008          140 YIMQFSGCINLTVNLLRSESSAA--CEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS  217 (858)
Q Consensus       140 ~ii~~~g~i~~Li~lL~~~~~~~--~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs  217 (858)
                      ..++..|+++.|++++.+++.+.  |..|++.|-.+.. .+|++.++.-| +..++.+.+.. +.++..+..+.+|.++-
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~-e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKER-EPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhc-CcHHHHHHHHHHHHHHh
Confidence            34567899999999999987654  8889999988754 36777777765 45555555443 26788999999999998


Q ss_pred             cCc-chHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHH
Q 003008          218 VDK-KHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS--KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEA  294 (858)
Q Consensus       218 ~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a  294 (858)
                      .+. +.+..++..|++..++-..+..+|.+...|+-+|.|++..  .+.+..+++..+.++|.-+-.+.   .+..+.+|
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk---Del~R~~A  327 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK---DELLRLHA  327 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch---HHHHHHHH
Confidence            654 5689999999999999999999999999999999999864  46777899999999999887654   34588899


Q ss_pred             HHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccc
Q 003008          295 RNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANI  374 (858)
Q Consensus       295 ~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i  374 (858)
                      +.+.+.++.+.+....+.+.|-+.  ||+=+ +          ..+                           ++     
T Consensus       328 ClAV~vlat~KE~E~~VrkS~Tla--LVEPl-v----------a~~---------------------------DP-----  362 (832)
T KOG3678|consen  328 CLAVAVLATNKEVEREVRKSGTLA--LVEPL-V----------ASL---------------------------DP-----  362 (832)
T ss_pred             HHHHhhhhhhhhhhHHHhhccchh--hhhhh-h----------hcc---------------------------Cc-----
Confidence            999999999887777777777666  45421 0          000                           11     


Q ss_pred             hHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHH-hc-CC
Q 003008          375 DEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIAD-IS-IN  452 (858)
Q Consensus       375 ~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~-~~  452 (858)
                        +            .++|...    +             +..=.-.+.++.|+.||.+...+.+..++-.++. .+ ++
T Consensus       363 --~------------~FARD~h----d-------------~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs  411 (832)
T KOG3678|consen  363 --G------------RFARDAH----D-------------YAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS  411 (832)
T ss_pred             --c------------hhhhhhh----h-------------hhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH
Confidence              0            0222110    0             0000012267889999988777777666655555 33 45


Q ss_pred             hhhHHHHH-HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008          453 EHMRMLFK-EAGAIKYLVKLLDHSSDAVRLATTHALERLSV  492 (858)
Q Consensus       453 ~~~~~~l~-~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~  492 (858)
                      .+++..++ +-|+|+.|-.+.++++..-...|-.+|.-+..
T Consensus       412 ~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  412 LQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             hccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            56666555 78999999999998876666677777776654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=4.8e-06  Score=94.13  Aligned_cols=193  Identities=16%  Similarity=0.058  Sum_probs=151.1

Q ss_pred             cHHHHHHHhCCC-CHHHHHHHHHHHHH-hc-CChhhHHHHHHcCcHHHHHHhhcCCc-HHHHHHHHHHHHHhhc-ChhHH
Q 003008          423 GVARLVLILGLE-DERAIARAAESIAD-IS-INEHMRMLFKEAGAIKYLVKLLDHSS-DAVRLATTHALERLSV-SRGVC  497 (858)
Q Consensus       423 ~i~~Lv~lL~~~-~~~v~~~a~~aL~~-l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~-~~v~~~a~~aL~~Ls~-~~~~~  497 (858)
                      -+..|+.-|... |+..|.+++.=|+. +. .+++.-..|--.-.+|.|+.||++++ .++...|+.||.+|+. .|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            456677777665 88888888888888 44 56666555556778999999999875 9999999999999998 78888


Q ss_pred             HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008          498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA  576 (858)
Q Consensus       498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L  576 (858)
                      ..++++++||.|+.-|. .-+-.++-|.+..+|-.+++   +..  ..+...|++...+.++.--...+++.|+ ...|+
T Consensus       248 a~vV~~~aIPvl~~kL~-~IeyiDvAEQ~LqALE~iSR---~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~  321 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLL-TIEYIDVAEQSLQALEKISR---RHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANC  321 (1051)
T ss_pred             heeecccchHHHHHhhh-hhhhhHHHHHHHHHHHHHHh---hcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987665 23336788889999999987   322  3577889999999998877788899998 77777


Q ss_pred             hccccc--hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008          577 VSETTT--SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS  624 (858)
Q Consensus       577 ~~~~~~--~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~  624 (858)
                      +..-..  . ..+  ...+|.|..+|+..+....+.++-++..++.+-.+
T Consensus       322 Cksi~sd~f-~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h  368 (1051)
T KOG0168|consen  322 CKSIRSDEF-HFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH  368 (1051)
T ss_pred             HhcCCCccc-hHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence            743222  2 233  35789999999999998888888888888765443

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.57  E-value=1.1e-05  Score=85.29  Aligned_cols=301  Identities=18%  Similarity=0.218  Sum_probs=198.2

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCc----HHHHHHHHcc-CCHHHHHHHHHHHHHhhcCch
Q 003008          104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGC----INLTVNLLRS-ESSAACEAAAGLLRSISSINV  178 (858)
Q Consensus       104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~----i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~~  178 (858)
                      -..++++|. ..|.-+...+.+++..++......    + +.+-    ...|...+.+ .+.+.+..|+++|..+...++
T Consensus       116 ~~~fl~ll~-r~d~~iv~~~~~Ils~la~~g~~~----~-~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e  189 (442)
T KOG2759|consen  116 WLSFLNLLN-RQDTFIVEMSFRILSKLACFGNCK----M-ELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE  189 (442)
T ss_pred             hHHHHHHHh-cCChHHHHHHHHHHHHHHHhcccc----c-cchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc
Confidence            345677776 666666666777777777654422    1 1112    2223344444 466777789999999999999


Q ss_pred             hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 003008          179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANL  257 (858)
Q Consensus       179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL  257 (858)
                      +|..++...++..++..+.+.-.+-+++.+..-+++-|+.++...+.+...+.|+.|.+++++. .++|.+-++.++.|+
T Consensus       190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl  269 (442)
T KOG2759|consen  190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL  269 (442)
T ss_pred             hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999884332477899999999999999998888888889999999999987 567889999999999


Q ss_pred             cCCcCc-------hHHHHhCCCHHHHHHHHccCCCCCHHHH-------HHHHHHHHHHhcChhhHHHHHHcCCccccccc
Q 003008          258 ALSKSN-------HNILVEAGVIPKLAMLLKANVEGSKVIR-------KEARNALIELAKDDYYRILIIEEGLVPVPMVG  323 (858)
Q Consensus       258 ~~~~~~-------~~~i~~~g~i~~Lv~ll~~~~~~~~~~~-------~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~  323 (858)
                      ....+.       ...++..++.+.+-.+...+-+ .+.+.       +.--.-...||..+++...+...-.-+.    
T Consensus       270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkys-DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WS----  344 (442)
T KOG2759|consen  270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYS-DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWS----  344 (442)
T ss_pred             hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCC----
Confidence            876532       2345655554444444433322 22222       2222222333333333333322111110    


Q ss_pred             ccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCC
Q 003008          324 ADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGR  403 (858)
Q Consensus       324 ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~  403 (858)
                                    |.+.       ..+          +|           .+.             ..+..        
T Consensus       345 --------------P~Hk-------~e~----------FW-----------~eN-------------a~rln--------  361 (442)
T KOG2759|consen  345 --------------PVHK-------SEK----------FW-----------REN-------------ADRLN--------  361 (442)
T ss_pred             --------------cccc-------ccc----------hH-----------HHh-------------HHHHh--------
Confidence                          0000       000          11           000             00000        


Q ss_pred             CCCCCCCcccccccccccccHHHHHHHhCCC-CHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHH
Q 003008          404 KPQSEFPIDRQLTLLPWIDGVARLVLILGLE-DERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRL  481 (858)
Q Consensus       404 ~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~  481 (858)
                              ++.      -..++.|+.+|... |+.+...||.=++. .-..|+.+..+.+.||=+.+++|+++++++||.
T Consensus       362 --------enn------yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry  427 (442)
T KOG2759|consen  362 --------ENN------YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRY  427 (442)
T ss_pred             --------hcc------HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHH
Confidence                    000      01567888999754 58889999999999 668999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 003008          482 ATTHALERLSV  492 (858)
Q Consensus       482 ~a~~aL~~Ls~  492 (858)
                      +|..|+..|-.
T Consensus       428 ~ALlavQ~lm~  438 (442)
T KOG2759|consen  428 HALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHh
Confidence            99999887653

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=0.00027  Score=79.89  Aligned_cols=347  Identities=14%  Similarity=0.083  Sum_probs=231.3

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCc
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSIN  177 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~  177 (858)
                      +...|++|++.+.++.=.+.|..|++.|..++..   . +..+ -.-|+++|+..|+.+  |++....++.++.++..++
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk---Y-R~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d   94 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---Y-REEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD   94 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---H-HHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence            4677899999987566667899999999988862   2 2334 367889999999876  8888888999999996644


Q ss_pred             h-------hH----------HH-HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cchHHHHH-hCCCHHHHH
Q 003008          178 V-------YR----------DL-VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIA-NTDILPLLI  236 (858)
Q Consensus       178 ~-------~~----------~~-i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~-~~g~i~~Lv  236 (858)
                      +       -+          +. |...+-|..|+..+...  |-.++.++...|.+|-.+  .+.+..+. .--+|..|+
T Consensus        95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm  172 (970)
T KOG0946|consen   95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM  172 (970)
T ss_pred             cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence            2       11          22 23377899999999988  999999999999998543  34555555 567899999


Q ss_pred             HHHccCCHHHHHHHHHHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHhc-ChhhHHHHHH
Q 003008          237 KSLEDENMKVKEAAGGVLANLALSKSNHN-ILVEAGVIPKLAMLLKANV-EGSKVIRKEARNALIELAK-DDYYRILIIE  313 (858)
Q Consensus       237 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~-~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~  313 (858)
                      .+|+...+.+|-.+.-.|..|+.+...-. .+.-..+...|..++..+. .+.-.+.+.|+..|-||-. |..|+....+
T Consensus       173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE  252 (970)
T KOG0946|consen  173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE  252 (970)
T ss_pred             HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence            99999988899999999999998765544 4555688999999887643 2233477899999999998 6789999999


Q ss_pred             cCCcccccccccccccCCccCCCCCCCCCcchhhc--ccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHH
Q 003008          314 EGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIER--TSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFL  391 (858)
Q Consensus       314 ~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L  391 (858)
                      .+.++. |..++.          ++.+.+| +...  .........++.+++.+. .+.|..-.....+           
T Consensus       253 ~~~i~r-L~klL~----------~f~~~d~-Ev~~W~~Qrv~Nv~~~Lqivr~lV-sP~Nt~~~~~q~q-----------  308 (970)
T KOG0946|consen  253 GSYIPR-LLKLLS----------VFEFGDG-EVFGWSTQRVQNVIEALQIVRSLV-SPGNTSSITHQNQ-----------  308 (970)
T ss_pred             cccHHH-HHhhcC----------cccccCc-ccccccHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHH-----------
Confidence            999995 887652          1222222 0000  000011112333333332 1212110000110           


Q ss_pred             HHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCC--CHHHHHHHHHHHHH-hcCChhhHHHHHHcCc----
Q 003008          392 VRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLE--DERAIARAAESIAD-ISINEHMRMLFKEAGA----  464 (858)
Q Consensus       392 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~----  464 (858)
                                              ..+...+.+..|..++-++  ..+|+..+.-++++ .-++..++..+.+..+    
T Consensus       309 ------------------------k~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~  364 (970)
T KOG0946|consen  309 ------------------------KALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIP  364 (970)
T ss_pred             ------------------------HHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCC
Confidence                                    1222233667777777766  46788888888888 5567777777764322    


Q ss_pred             ------HHHHHHhhcC-CcHHHHHHHHHHHHHhhc-ChhHHHHHH
Q 003008          465 ------IKYLVKLLDH-SSDAVRLATTHALERLSV-SRGVCQIME  501 (858)
Q Consensus       465 ------i~~Lv~LL~~-~~~~v~~~a~~aL~~Ls~-~~~~~~~l~  501 (858)
                            +-.++.+..+ .....|.++..++..... +.+....+.
T Consensus       365 ~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l  409 (970)
T KOG0946|consen  365 NPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFL  409 (970)
T ss_pred             CCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence                  1122233333 347888888888888776 555544443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=0.00016  Score=83.33  Aligned_cols=111  Identities=15%  Similarity=0.148  Sum_probs=94.4

Q ss_pred             cHHHHHHHhC-CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008          423 GVARLVLILG-LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME  501 (858)
Q Consensus       423 ~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~  501 (858)
                      ..+-+..++. ..++.++.-|...+..+..+.+....+.+.|.+..|+.+|++ -+..|+.+...|..|+++++....-.
T Consensus      1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred             ccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            4455555554 467899999999999998999999999999999999998854 57899999999999999999988888


Q ss_pred             HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                      +.|++..+.+++- .++.++++..++..|+.+..
T Consensus      1851 ~hg~l~yil~~~c-~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1851 EHGGLMYILSILC-LTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             hcCchhhhhHHHh-ccCcHHHHHHHHHHHHHhhh
Confidence            9999999988886 45568889999999999876

>PTZ00429 beta-adaptin; Provisional

Probab=98.52  E-value=0.00023  Score=84.17  Aligned_cols=176  Identities=15%  Similarity=0.056  Sum_probs=122.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 003008          104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLV  183 (858)
Q Consensus       104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i  183 (858)
                      .+.+++++. ++|..+|.-....|.+.+......  .++    ++..|.+-+.+.++.+|-.|+++|.+|-..+     +
T Consensus        70 F~dVvk~~~-S~d~elKKLvYLYL~~ya~~~pel--alL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i  137 (746)
T PTZ00429         70 FVDVVKLAP-STDLELKKLVYLYVLSTARLQPEK--ALL----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----V  137 (746)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHcccChHH--HHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----H
Confidence            455666776 778888888877888887644432  222    4677788888899999999988888775532     2


Q ss_pred             HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCc
Q 003008          184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN  263 (858)
Q Consensus       184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~  263 (858)
                      .+. .++.+.+.+.+.  ++.+++.|+.++.++-..+.  ..+.+.|.++.|.++|.+.++.+...|+.+|..+......
T Consensus       138 ~e~-l~~~lkk~L~D~--~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~  212 (746)
T PTZ00429        138 LEY-TLEPLRRAVADP--DPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE  212 (746)
T ss_pred             HHH-HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence            221 467778888887  99999999999999864332  2344678899999999999999999999999999765433


Q ss_pred             hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 003008          264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIE  300 (858)
Q Consensus       264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~n  300 (858)
                      +..+ ..+.+..|+..+...++.   .|-..+.+|..
T Consensus       213 ~l~l-~~~~~~~Ll~~L~e~~EW---~Qi~IL~lL~~  245 (746)
T PTZ00429        213 KIES-SNEWVNRLVYHLPECNEW---GQLYILELLAA  245 (746)
T ss_pred             hhHH-HHHHHHHHHHHhhcCChH---HHHHHHHHHHh
Confidence            2222 224455666666544332   44555555543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=3.6e-05  Score=78.00  Aligned_cols=292  Identities=20%  Similarity=0.199  Sum_probs=193.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHH-HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 003008          105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIM-QFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLV  183 (858)
Q Consensus       105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii-~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i  183 (858)
                      -.++++|. +..|.+|..|+..+..+... ..+  .+. -+.-.++.+.+++....+  -+.|+.+|.|++.....|..+
T Consensus         6 ~elv~ll~-~~sP~v~~~AV~~l~~lt~~-~~~--~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l   79 (353)
T KOG2973|consen    6 VELVELLH-SLSPPVRKAAVEHLLGLTGR-GLQ--SLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL   79 (353)
T ss_pred             HHHHHHhc-cCChHHHHHHHHHHhhcccc-chh--hhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence            45788997 88999999999999998876 221  121 123467888889888766  556999999999999888888


Q ss_pred             HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH---h----CCCHHHHHHHHccC-CH-HHHHHHHHHH
Q 003008          184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA---N----TDILPLLIKSLEDE-NM-KVKEAAGGVL  254 (858)
Q Consensus       184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~---~----~g~i~~Lv~ll~~~-~~-~~~~~a~~~L  254 (858)
                      .+. .+..++..+-.+  ........+.+|.||+..++....+.   .    .|.++........+ +. .-..+.+-.+
T Consensus        80 l~~-~~k~l~~~~~~p--~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf  156 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDP--QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF  156 (353)
T ss_pred             HHH-HHHHHHHHhcCc--ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence            877 677777777665  45566778899999998887644433   1    33333333333333 21 3456788899


Q ss_pred             HHHcCCcCchHHHHhCCCH--HHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCc
Q 003008          255 ANLALSKSNHNILVEAGVI--PKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRP  332 (858)
Q Consensus       255 ~nL~~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~  332 (858)
                      .||+....+|..+.+...+  +.|+. +.+  .++..-+...++.|.|+|.+..+...+.+. .+. .|.-+        
T Consensus       157 ~nls~~~~gR~l~~~~k~~p~~kll~-ft~--~~s~vRr~GvagtlkN~cFd~~~h~~lL~e-~~~-lLp~i--------  223 (353)
T KOG2973|consen  157 ANLSQFEAGRKLLLEPKRFPDQKLLP-FTS--EDSQVRRGGVAGTLKNCCFDAKLHEVLLDE-SIN-LLPAI--------  223 (353)
T ss_pred             HHHhhhhhhhhHhcchhhhhHhhhhc-ccc--cchhhhccchHHHHHhhhccchhHHHHhcc-hHH-HHHHH--------
Confidence            9999999999988766532  22222 222  234445567899999999988877777663 233 13322        


Q ss_pred             cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcc
Q 003008          333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPID  412 (858)
Q Consensus       333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~  412 (858)
                                                   |.-++...   ++.+.-+..+-                             
T Consensus       224 -----------------------------LlPlagpe---e~sEEdm~~LP-----------------------------  242 (353)
T KOG2973|consen  224 -----------------------------LLPLAGPE---ELSEEDMAKLP-----------------------------  242 (353)
T ss_pred             -----------------------------HhhcCCcc---ccCHHHHhcCC-----------------------------
Confidence                                         22232111   12222221111                             


Q ss_pred             cccccccccccHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHH
Q 003008          413 RQLTLLPWIDGVARLVLIL-----GLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHA  486 (858)
Q Consensus       413 ~~~~~l~~~~~i~~Lv~lL-----~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~a  486 (858)
                                   .=+++|     ..+|+.++..-..+|.-++.+...|+.++..|+-+.|-.+=+ .+++++++.+-..
T Consensus       243 -------------~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~v  309 (353)
T KOG2973|consen  243 -------------VELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQV  309 (353)
T ss_pred             -------------HhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHH
Confidence                         111222     246889999999999999999999999998887666655433 3568888887666


Q ss_pred             HHHhhc
Q 003008          487 LERLSV  492 (858)
Q Consensus       487 L~~Ls~  492 (858)
                      ..-|..
T Consensus       310 vq~Lv~  315 (353)
T KOG2973|consen  310 VQMLVR  315 (353)
T ss_pred             HHHHHh
Confidence            555554

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.50  E-value=0.00074  Score=77.86  Aligned_cols=409  Identities=16%  Similarity=0.134  Sum_probs=236.0

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc--hh
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN--VY  179 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~--~~  179 (858)
                      ..++.+++.|+  ++ -.|..|++++..++...-.- +..-.-..+++.+..+++......+.....++..|..+-  ..
T Consensus       611 ~~L~il~eRl~--nE-iTRl~AvkAlt~Ia~S~l~i-~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~  686 (1233)
T KOG1824|consen  611 RTLPILLERLG--NE-ITRLTAVKALTLIAMSPLDI-DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSI  686 (1233)
T ss_pred             HHHHHHHHHHh--ch-hHHHHHHHHHHHHHhcccee-ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34555666664  33 46889999999998765542 212112567888999998887777777777777775432  22


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008          180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL  259 (858)
Q Consensus       180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~  259 (858)
                      .....+. ++..+..++...  +..+...|...|..+.........-...-.++.++.+++++-  ++-.+..++.++- 
T Consensus       687 ~~~~~e~-vL~el~~Lises--dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f-  760 (1233)
T KOG1824|consen  687 PAELLEA-VLVELPPLISES--DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFF-  760 (1233)
T ss_pred             cHHHHHH-HHHHhhhhhhHH--HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHH-
Confidence            3333322 345555566665  778888899999999877766665667778999999999873  3444444444331 


Q ss_pred             CcCchHHHHh---CCC-HHHHHHHHccCCCCCHH--HHHH----HHHHHHHHhc-Ch-hhHHHHHHcCCccccccccccc
Q 003008          260 SKSNHNILVE---AGV-IPKLAMLLKANVEGSKV--IRKE----ARNALIELAK-DD-YYRILIIEEGLVPVPMVGADAY  327 (858)
Q Consensus       260 ~~~~~~~i~~---~g~-i~~Lv~ll~~~~~~~~~--~~~~----a~~aL~nl~~-~~-~~~~~i~~~g~v~~~Lv~ll~~  327 (858)
                           .+++.   .+. ...|+.++.....+...  +-+.    .+.+..-|+. .+ +++...      . .|+.-   
T Consensus       761 -----~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a------~-kl~~~---  825 (1233)
T KOG1824|consen  761 -----QALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLA------T-KLIQD---  825 (1233)
T ss_pred             -----HHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHH------H-HHHHH---
Confidence                 11111   111 45666666543221100  1111    2222222222 11 111110      0 01110   


Q ss_pred             ccCCccCCCCCCCCCcchhhcccC--CchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCC
Q 003008          328 KSFRPELHSWPSLPDGTEIERTSQ--GPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKP  405 (858)
Q Consensus       328 ~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~  405 (858)
                                         +++++  ...+.-|...|..+..+.                                    
T Consensus       826 -------------------~~s~~s~~~ikvfa~LslGElgr~~------------------------------------  850 (1233)
T KOG1824|consen  826 -------------------LQSPKSSDSIKVFALLSLGELGRRK------------------------------------  850 (1233)
T ss_pred             -------------------HhCCCCchhHHHHHHhhhhhhccCC------------------------------------
Confidence                               00000  011111222222221111                                    


Q ss_pred             CCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHH
Q 003008          406 QSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATT  484 (858)
Q Consensus       406 ~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~  484 (858)
                                ...+..+.-..+++-+++++++++..|+.||++++. +-+        ..+|.++....+.. .-|+--.
T Consensus       851 ----------~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil~qi~sqp-k~QyLLL  911 (1233)
T KOG1824|consen  851 ----------DLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFILEQIESQP-KRQYLLL  911 (1233)
T ss_pred             ----------CCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHHHHHhcch-HhHHHHH
Confidence                      112222334467788999999999999999999663 332        35777777775543 2233223


Q ss_pred             HHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCC--CccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc
Q 003008          485 HALERLSV--SRGVCQIMEAEGVVHPLVNTLKNL--DISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE  560 (858)
Q Consensus       485 ~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~  560 (858)
                      ..|...-.  +.+   .  -.-.++.++.+|...  ...+..|...+.||+.|..          +.+..-+|.|-.++.
T Consensus       912 hSlkevi~~~svd---~--~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l----------~epesLlpkL~~~~~  976 (1233)
T KOG1824|consen  912 HSLKEVIVSASVD---G--LKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL----------IEPESLLPKLKLLLR  976 (1233)
T ss_pred             HHHHHHHHHhccc---h--hhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh----------CChHHHHHHHHHHhc
Confidence            33322211  111   0  112456666665432  2235578889999999987          233345788888999


Q ss_pred             CCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 003008          561 SLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSM  625 (858)
Q Consensus       561 s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~  625 (858)
                      |+++..+..++ ++.+.+.+.... -.......|...+.++++++.+|++.|+.++...+.+.+..
T Consensus       977 S~a~~~rs~vvsavKfsisd~p~~-id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen  977 SEASNTRSSVVSAVKFSISDQPQP-IDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred             CCCcchhhhhhheeeeeecCCCCc-cCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhH
Confidence            99998888888 887777665444 23333455678889999999999999999999988876654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.43  E-value=2.4e-06  Score=92.21  Aligned_cols=176  Identities=20%  Similarity=0.253  Sum_probs=135.6

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC----CHHHHHHHHHHHHHhhcCch
Q 003008          103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE----SSAACEAAAGLLRSISSINV  178 (858)
Q Consensus       103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~----~~~~~~~a~~aL~nLs~~~~  178 (858)
                      ....|++++. .+|..++..|+..|..+........ ... ..+.++.+++.+++.    +.+.+..++.+|.+|...++
T Consensus       106 ~~~~fl~ll~-~~D~~i~~~a~~iLt~Ll~~~~~~~-~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~  182 (312)
T PF03224_consen  106 PYSPFLKLLD-RNDSFIQLKAAFILTSLLSQGPKRS-EKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE  182 (312)
T ss_dssp             -HHHHHHH-S--SSHHHHHHHHHHHHHHHTSTTT---HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH
T ss_pred             hHHHHHHHhc-CCCHHHHHHHHHHHHHHHHcCCccc-cch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch
Confidence            5677888887 7899999999999999987766542 221 246778888888763    44566889999999999999


Q ss_pred             hHHHHHhcCcHHHHHHHh-----cCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHH
Q 003008          179 YRDLVAECGAIEEITGLL-----TRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGG  252 (858)
Q Consensus       179 ~~~~i~~~g~i~~Lv~lL-----~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~  252 (858)
                      +|..+.+.|+++.+..++     .+...+.+++.+++-++|-||++++....+...+.++.|+.+++.. .+++.+-++.
T Consensus       183 ~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la  262 (312)
T PF03224_consen  183 YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLA  262 (312)
T ss_dssp             HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHH
Confidence            999999999999999999     2222367899999999999999999999999999999999999876 7789999999


Q ss_pred             HHHHHcCCcC--chHHHHhCCCHHHHHHHHc
Q 003008          253 VLANLALSKS--NHNILVEAGVIPKLAMLLK  281 (858)
Q Consensus       253 ~L~nL~~~~~--~~~~i~~~g~i~~Lv~ll~  281 (858)
                      +|.||...+.  +...++..|+++.+-.+..
T Consensus       263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            9999998765  6677787666555444443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=9.9e-06  Score=84.55  Aligned_cols=185  Identities=11%  Similarity=0.075  Sum_probs=148.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHH
Q 003008          433 LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVN  511 (858)
Q Consensus       433 ~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~  511 (858)
                      +.+.+-+..|..-|..+..+-++...++..|+..+|+.++++.+..+|..|++.++.++. +|.....+.+.|+.+.|+.
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            346677888888888888888899999999999999999999999999999999999999 7999999999999999999


Q ss_pred             hhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCC--ChhHHHHHH-HHHHhhccccchhhhHh
Q 003008          512 TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESL--DPSIELTGN-VIEAAVSETTTSYGKVL  588 (858)
Q Consensus       512 lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~--d~~v~~~a~-~l~~L~~~~~~~~~~i~  588 (858)
                      ++. .+.+..++..|..+++.+-.+.  ......+...+|+..|+..+.++  ++..++.++ .+..+.+....-...+.
T Consensus       174 ~ls-~~~~~~~r~kaL~AissLIRn~--~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  174 ILS-SDDPNTVRTKALFAISSLIRNN--KPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHc-cCCCchHHHHHHHHHHHHHhcC--cHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            998 6667888899999999888732  22333456678999999999995  455666677 77777765554424455


Q ss_pred             hccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008          589 DSVFIGRMIGIMKTSYPDLQRKAASILEFITI  620 (858)
Q Consensus       589 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~  620 (858)
                      ..+....+..+..+.+.++.+.++.++..+..
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            56666667777778888888888877765543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.39  E-value=3.5e-05  Score=81.61  Aligned_cols=273  Identities=14%  Similarity=0.117  Sum_probs=185.7

Q ss_pred             HHHHHhCCCHHHHHHHHccCCH--HHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 003008          223 RLKIANTDILPLLIKSLEDENM--KVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIE  300 (858)
Q Consensus       223 ~~~i~~~g~i~~Lv~ll~~~~~--~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~n  300 (858)
                      +..|...|++..|++++..++.  .++.+|.+.|..+.. .+++..+...| +..++.+-+..  ..+..++..+..|.|
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~--e~~e~aR~~~~il~~  248 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKER--EPVELARSVAGILEH  248 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhc--CcHHHHHHHHHHHHH
Confidence            4567788999999999999854  468899999987753 45677676655 44444444321  245578889999999


Q ss_pred             HhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHH
Q 003008          301 LAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM  379 (858)
Q Consensus       301 l~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~  379 (858)
                      |..+ ++....+++.|++.. ++-.                                                       
T Consensus       249 mFKHSeet~~~Lvaa~~lD~-vl~~-------------------------------------------------------  272 (832)
T KOG3678|consen  249 MFKHSEETCQRLVAAGGLDA-VLYW-------------------------------------------------------  272 (832)
T ss_pred             HhhhhHHHHHHHHhhcccch-heee-------------------------------------------------------
Confidence            9985 577788888888885 3221                                                       


Q ss_pred             hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc--CChhhHH
Q 003008          380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS--INEHMRM  457 (858)
Q Consensus       380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~--~~~~~~~  457 (858)
                                                                         ++..++.+...|+-+|+|+.  ...+.+.
T Consensus       273 ---------------------------------------------------~rRt~P~lLRH~ALAL~N~~L~~~~a~qr  301 (832)
T KOG3678|consen  273 ---------------------------------------------------CRRTDPALLRHCALALGNCALHGGQAVQR  301 (832)
T ss_pred             ---------------------------------------------------cccCCHHHHHHHHHHhhhhhhhchhHHHH
Confidence                                                               11123456667888888843  5677888


Q ss_pred             HHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCC
Q 003008          458 LFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPS  537 (858)
Q Consensus       458 ~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~  537 (858)
                      .+++..+-+.|.-|-.+.++-.|..|+.+.+.|+.+.+....+.+.|.+..+--++...+ +...           +.  
T Consensus       302 rmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~D-P~~F-----------AR--  367 (832)
T KOG3678|consen  302 RMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLD-PGRF-----------AR--  367 (832)
T ss_pred             HHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccC-cchh-----------hh--
Confidence            899999999999999899999999999999999999998888999887654444444222 1111           11  


Q ss_pred             cccccccccccCcCcHHHHHhhcCCChhHHHHHH---HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHH
Q 003008          538 KEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN---VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASI  614 (858)
Q Consensus       538 ~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~---~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~  614 (858)
                       +...-.+-...+.++.|+-+|.|.-.+.+-.+.   +...-+...++....+-+-|+|+.|-++.+|.+......|-.+
T Consensus       368 -D~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseA  446 (832)
T KOG3678|consen  368 -DAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEA  446 (832)
T ss_pred             -hhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence             110000011123466777788766555554443   2223334445553566788999999999999888777777777


Q ss_pred             HHHhhcC
Q 003008          615 LEFITII  621 (858)
Q Consensus       615 L~~l~~~  621 (858)
                      |..+-..
T Consensus       447 LtviGEE  453 (832)
T KOG3678|consen  447 LTVIGEE  453 (832)
T ss_pred             HHHhccc
Confidence            7766443

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.35  E-value=5.7e-06  Score=73.20  Aligned_cols=129  Identities=17%  Similarity=0.164  Sum_probs=109.4

Q ss_pred             CcHHHHHHHH-ccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHH
Q 003008          146 GCINLTVNLL-RSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRL  224 (858)
Q Consensus       146 g~i~~Li~lL-~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~  224 (858)
                      +-+..|+.-. ...+.+.+++...-|.|.+.++-|-..+.+..++...++.|..+  |...++.+...|||+|.++.++.
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~--ne~LvefgIgglCNlC~d~~n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ--NELLVEFGIGGLCNLCLDKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc--cHHHHHHhHHHHHhhccChHHHH
Confidence            3344555444 34588999999999999999999999999999999999999998  99999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHH
Q 003008          225 KIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLL  280 (858)
Q Consensus       225 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll  280 (858)
                      .|++++++|.++..+.++.....-.++.+|..|+... ..+..+..    |++|..+
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v  146 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV  146 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence            9999999999999999998888999999999998764 44555544    4555544

>TIGR02270 conserved hypothetical protein

Probab=98.31  E-value=9.8e-05  Score=81.53  Aligned_cols=149  Identities=14%  Similarity=0.038  Sum_probs=114.8

Q ss_pred             cHHHHHHHh-CCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008          423 GVARLVLIL-GLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME  501 (858)
Q Consensus       423 ~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~  501 (858)
                      +++.++..| ..++.++...++.++.....          ..++..|+..|.+.++.|+..++.+|+.+-.         
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~---------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG---------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc---------
Confidence            688899999 46778887777776654322          2248999999999999999999999987653         


Q ss_pred             HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008          502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET  580 (858)
Q Consensus       502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~  580 (858)
                       .+..+.|+.+|.+.+  +.++..+..++.....              +..+.++.+++++|+.++..++ ++..+-   
T Consensus       116 -~~a~~~L~~~L~~~~--p~vR~aal~al~~r~~--------------~~~~~L~~~L~d~d~~Vra~A~raLG~l~---  175 (410)
T TIGR02270       116 -RQAEPWLEPLLAASE--PPGRAIGLAALGAHRH--------------DPGPALEAALTHEDALVRAAALRALGELP---  175 (410)
T ss_pred             -hHHHHHHHHHhcCCC--hHHHHHHHHHHHhhcc--------------ChHHHHHHHhcCCCHHHHHHHHHHHHhhc---
Confidence             345788889997444  7788777766655332              1367899999999999999998 776543   


Q ss_pred             cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008          581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFI  618 (858)
Q Consensus       581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l  618 (858)
                              ....++.|...+.+.++.|+..|+..+..+
T Consensus       176 --------~~~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       176 --------RRLSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             --------cccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence                    234567888999999999999999999766

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=6.1e-05  Score=78.75  Aligned_cols=184  Identities=18%  Similarity=0.202  Sum_probs=145.3

Q ss_pred             CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHH
Q 003008          114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEI  192 (858)
Q Consensus       114 s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~L  192 (858)
                      +.+++.+..|..-|..++.+-++. ..++ ..|++..++..+.+++.++|+.|++.|...+.++ ..+..+.+.|+++.|
T Consensus        94 s~~le~ke~ald~Le~lve~iDnA-ndl~-~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNA-NDLI-SLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhH-HhHh-hccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            457788888998898888776663 4677 6999999999999999999999999999999876 599999999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHhccCc-chHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHHcCCc-CchHHHH
Q 003008          193 TGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGVLANLALSK-SNHNILV  268 (858)
Q Consensus       193 v~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~~-~~~~~i~  268 (858)
                      +..+.+.. +..++..|+-+++.|-.+. .....+...++...|...+.++  +...+..++..+.+|.... ..+..+.
T Consensus       172 l~~ls~~~-~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  172 LKILSSDD-PNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHHHccCC-CchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            99999762 5566788999999988665 4677788888899999999995  6678899999999998754 3333444


Q ss_pred             hCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008          269 EAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK  303 (858)
Q Consensus       269 ~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~  303 (858)
                      ..|....++.+..+....   +.+.+..++..+..
T Consensus       251 ~~~f~~~~~~l~~~l~~~---~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFE---VNEAALTALLSLLS  282 (342)
T ss_pred             HhhhhHHHHHHhhccchh---hhHHHHHHHHHHHH
Confidence            455555555565554322   67788877776665

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.22  E-value=1.4e-05  Score=70.79  Aligned_cols=124  Identities=15%  Similarity=0.136  Sum_probs=108.6

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhH
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYR  180 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~  180 (858)
                      -+.+..|++-.....+.+.+++...-|.|++.++.+.  .++++.++++.++..|...+....+.+.+.|+|++-++.+.
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Ny--s~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~   92 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINY--SHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA   92 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchH--HHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence            5677788887765677788999998999999998885  56678999999999999999999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc-hHHHHHh
Q 003008          181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK-HRLKIAN  228 (858)
Q Consensus       181 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~  228 (858)
                      ..|.+++++|.++..+.++  ...+...++.+|..|+..+. .+..+..
T Consensus        93 ~~I~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~~~Rt~r~ell~  139 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVLSSP--PEITVHSAALFLQLLEFGERTERDELLS  139 (173)
T ss_pred             HHHHHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence            9999999999999999998  88899999999999997653 4666643

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.00042  Score=70.50  Aligned_cols=291  Identities=19%  Similarity=0.172  Sum_probs=187.8

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003008          149 NLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA  227 (858)
Q Consensus       149 ~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~  227 (858)
                      -.++.++.+.++.++..|+.-|.+++.. ..+..... .-.++.+.+++...  .+  .+.|+.+|.|++-++..+..+.
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            4578899999999999999999888766 33333322 44678899999876  55  7789999999999999888888


Q ss_pred             hCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHH---Hh----CCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 003008          228 NTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNIL---VE----AGVIPKLAMLLKANVEGSKVIRKEARNALIE  300 (858)
Q Consensus       228 ~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i---~~----~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~n  300 (858)
                      +. .++.++.++..+....-...+..|.|++..++....+   ..    .|.+...+.....+... ..--.+.+.++.|
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~-~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNA-YAEFHYLAPVFAN  158 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccccc-ccchhHHHHHHHH
Confidence            77 8888888888886678889999999999987655533   12    45555555566554331 1234578889999


Q ss_pred             HhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhh-HHHHHHhccCCCCCCccchHHHH
Q 003008          301 LAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKF-GANELLLGLNVSDKNANIDEAKM  379 (858)
Q Consensus       301 l~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~a~~aL~nL~~~~~~~~i~~~~~  379 (858)
                      ++..+..|.-+.+...++  .-.++.++++            ++        ..++ +.+++|.|++.+..++       
T Consensus       159 ls~~~~gR~l~~~~k~~p--~~kll~ft~~------------~s--------~vRr~GvagtlkN~cFd~~~h-------  209 (353)
T KOG2973|consen  159 LSQFEAGRKLLLEPKRFP--DQKLLPFTSE------------DS--------QVRRGGVAGTLKNCCFDAKLH-------  209 (353)
T ss_pred             HhhhhhhhhHhcchhhhh--Hhhhhccccc------------ch--------hhhccchHHHHHhhhccchhH-------
Confidence            999988888887776444  2222111111            11        1122 2677788776543110       


Q ss_pred             hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHH
Q 003008          380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLF  459 (858)
Q Consensus       380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l  459 (858)
                                                                      -.+|+ +...+.   +..|.=+++.++.-..=
T Consensus       210 ------------------------------------------------~~lL~-e~~~lL---p~iLlPlagpee~sEEd  237 (353)
T KOG2973|consen  210 ------------------------------------------------EVLLD-ESINLL---PAILLPLAGPEELSEED  237 (353)
T ss_pred             ------------------------------------------------HHHhc-chHHHH---HHHHhhcCCccccCHHH
Confidence                                                            01121 111111   12222244422211111


Q ss_pred             HHcCcHHHHHHhhc-----CCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHH
Q 003008          460 KEAGAIKYLVKLLD-----HSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDIL  530 (858)
Q Consensus       460 ~~~g~i~~Lv~LL~-----~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L  530 (858)
                      . .+.-.-| ++|.     .+++++|..-..+|.-|+.....|+.++..|+.+.+ .-+....+++++++.+-...
T Consensus       238 m-~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpil-RElhk~e~ded~~~ace~vv  310 (353)
T KOG2973|consen  238 M-AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPIL-RELHKWEEDEDIREACEQVV  310 (353)
T ss_pred             H-hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHH-HHHhcCCCcHHHHHHHHHHH
Confidence            1 2333333 6665     357999999999999999999999999887776555 45554666777776554443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.00098  Score=75.59  Aligned_cols=283  Identities=20%  Similarity=0.227  Sum_probs=191.6

Q ss_pred             cCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc--
Q 003008          145 SGCINLTVNLLRSE-SSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK--  221 (858)
Q Consensus       145 ~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~--  221 (858)
                      ...|+.|+..+.+. =.+-|+.|+++|..+|.  .+|..+... |+++++..|+..-+|+++..+++.+++++..+++  
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            44678888887665 45668889999998775  678777766 5689999888766799999999999999976553  


Q ss_pred             -----hH-----------HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--cCchHHH-HhCCCHHHHHHHHcc
Q 003008          222 -----HR-----------LKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS--KSNHNIL-VEAGVIPKLAMLLKA  282 (858)
Q Consensus       222 -----~~-----------~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~i-~~~g~i~~Lv~ll~~  282 (858)
                           .+           ..|-..+-|..|+..+...+-.+|.++...|.++-.+  .+.+..+ .-.-+|..|+.+|+.
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence                 12           1233677888999999999999999999999999665  4556655 445789999999976


Q ss_pred             CCCCCHHHHHHHHHHHHHHhcChhhHHHH-HHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHH
Q 003008          283 NVEGSKVIRKEARNALIELAKDDYYRILI-IEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANEL  361 (858)
Q Consensus       283 ~~~~~~~~~~~a~~aL~nl~~~~~~~~~i-~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~a  361 (858)
                      ..   +.+|-.+...|..|..+..+.+.+ +=++++.. |..++                      +             
T Consensus       178 sr---E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFer-LfsII----------------------e-------------  218 (970)
T KOG0946|consen  178 SR---EPIRNEAILLLSELVKDNSSIQKLVAFENAFER-LFSII----------------------E-------------  218 (970)
T ss_pred             hh---hhhchhHHHHHHHHHccCchHHHHHHHHHHHHH-HHHHH----------------------H-------------
Confidence            42   337778888888888754333332 22333332 33321                      0             


Q ss_pred             HhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHH
Q 003008          362 LLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIAR  441 (858)
Q Consensus       362 L~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~  441 (858)
                            ..                                                    |+         .+..-|...
T Consensus       219 ------eE----------------------------------------------------Gg---------~dGgIVveD  231 (970)
T KOG0946|consen  219 ------EE----------------------------------------------------GG---------LDGGIVVED  231 (970)
T ss_pred             ------hc----------------------------------------------------CC---------CCCcchHHH
Confidence                  00                                                    00         000113345


Q ss_pred             HHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCC---c------HHHH-HH---HHHHHHHhhc-------ChhHHHHH
Q 003008          442 AAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHS---S------DAVR-LA---TTHALERLSV-------SRGVCQIM  500 (858)
Q Consensus       442 a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~---~------~~v~-~~---a~~aL~~Ls~-------~~~~~~~l  500 (858)
                      |...|-| +-.+..++..|.+.+-||.|.++|...   +      ..-| .+   +..++..+..       ...+.+.+
T Consensus       232 CL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l  311 (970)
T KOG0946|consen  232 CLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKAL  311 (970)
T ss_pred             HHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            5555566 446777888899999999999988632   1      1112 12   2233333332       12345688


Q ss_pred             HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCC
Q 003008          501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDP  536 (858)
Q Consensus       501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~  536 (858)
                      ...+++..|..++.++.-+.+++..+..++++..+.
T Consensus       312 ~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRg  347 (970)
T KOG0946|consen  312 VSSHLLDVLCTILMHPGVPADILTESIITVAEVVRG  347 (970)
T ss_pred             HHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHh
Confidence            889999999998887767788888888888877653

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.0033  Score=71.35  Aligned_cols=356  Identities=13%  Similarity=0.094  Sum_probs=192.4

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHH----ccCCH-HHHHHHHHHHHHhhcCchhHHHH
Q 003008          109 QMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLL----RSESS-AACEAAAGLLRSISSINVYRDLV  183 (858)
Q Consensus       109 ~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL----~~~~~-~~~~~a~~aL~nLs~~~~~~~~i  183 (858)
                      .-|+ ++.|.....|..++..++..+--        .+..|.|+..|    ..+.+ .+++.++.+|+-++.+-+.....
T Consensus        97 ~tL~-~~ep~~~s~Aaq~va~IA~~ElP--------~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~  167 (859)
T KOG1241|consen   97 RTLG-SPEPRRPSSAAQCVAAIACIELP--------QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLE  167 (859)
T ss_pred             HHcC-CCCCCccchHHHHHHHHHHhhCc--------hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHH
Confidence            3454 55555555555566555542221        23445555554    33333 58899999999999865544333


Q ss_pred             Hh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcch-HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008          184 AE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKH-RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS  260 (858)
Q Consensus       184 ~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~  260 (858)
                      -. ..++-.++.-++...-+..++..|+.+|.|-- +...| ....-..=.+...++...+++.+++..|..+|..+..-
T Consensus       168 ~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L  247 (859)
T KOG1241|consen  168 QQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL  247 (859)
T ss_pred             HHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH
Confidence            33 33556666644433227789999999999843 22222 11111122355667778888999999999999888643


Q ss_pred             -cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhh----HHHHHHcCCcccccccccccccCCccCC
Q 003008          261 -KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYY----RILIIEEGLVPVPMVGADAYKSFRPELH  335 (858)
Q Consensus       261 -~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~----~~~i~~~g~v~~~Lv~ll~~~~~~~~l~  335 (858)
                       .+.-..-.+......-+.-+++.+   +.+.-.+...=+++|..+-.    -....+.|..|.  ...           
T Consensus       248 yY~~m~~yM~~alfaitl~amks~~---deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~--~~~-----------  311 (859)
T KOG1241|consen  248 YYEFMEPYMEQALFAITLAAMKSDN---DEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPS--SKY-----------  311 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch--hhH-----------
Confidence             222222222223344455565542   33555666655667653211    122233332210  000           


Q ss_pred             CCCCCCCcchhhcccCCchhhHHHHHHhcc-CCCCCC-----ccchH--HHHhhhhhhhhhhHHHHhhcccccCCCCCCC
Q 003008          336 SWPSLPDGTEIERTSQGPSKFGANELLLGL-NVSDKN-----ANIDE--AKMNAMVGRSRQHFLVRIGAIESEDGRKPQS  407 (858)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL-~~~~~~-----~~i~~--~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l  407 (858)
                                ..+    ......+-.|.++ ...+++     ..+..  +.+-        +.+++.-.    |      
T Consensus       312 ----------fa~----~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL--------~l~A~~~~----D------  359 (859)
T KOG1241|consen  312 ----------FAR----QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCL--------MLFAQCVG----D------  359 (859)
T ss_pred             ----------HHH----HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHH--------HHHHHHhc----c------
Confidence                      000    0001111111111 111111     11111  1111        11222210    0      


Q ss_pred             CCCcccccccccccccHHHHH-HHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHH
Q 003008          408 EFPIDRQLTLLPWIDGVARLV-LILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH  485 (858)
Q Consensus       408 ~~~~~~~~~~l~~~~~i~~Lv-~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~  485 (858)
                              ..++   .+-+++ +-++++|..-+..|+.+++. +-+-++.+-.-+..+++|.++.++.+++-.++..++|
T Consensus       360 --------~Iv~---~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAw  428 (859)
T KOG1241|consen  360 --------DIVP---HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAW  428 (859)
T ss_pred             --------cchh---hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHH
Confidence                    1111   222333 36778999999999999999 4444455555556889999999999888999999999


Q ss_pred             HHHHhhc-ChhHH-HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          486 ALERLSV-SRGVC-QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       486 aL~~Ls~-~~~~~-~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                      +|+.++. .++.+ ........++.++.-|. .+  +-+-..++|++.+|+.
T Consensus       429 tlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-De--Prva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  429 TLGRIADFLPEAIINQELLQSKLSALLEGLN-DE--PRVASNVCWAFISLAE  477 (859)
T ss_pred             HHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hC--chHHHHHHHHHHHHHH
Confidence            9999997 34322 22223344555555555 22  5677788888888874

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.13  E-value=5.5e-06  Score=59.40  Aligned_cols=41  Identities=29%  Similarity=0.349  Sum_probs=38.7

Q ss_pred             ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008          452 NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV  492 (858)
Q Consensus       452 ~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~  492 (858)
                      ++++++.+++.|++++|+++|+++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>TIGR02270 conserved hypothetical protein

Probab=98.08  E-value=0.0014  Score=72.56  Aligned_cols=245  Identities=17%  Similarity=0.100  Sum_probs=166.4

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY  179 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~  179 (858)
                      +..+++.++..|..+++..++..++.++.  ..+          ...++..|+..|.+.++.++..++.+|..+-.    
T Consensus        52 G~~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~----------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----  115 (410)
T TIGR02270        52 GKAATELLVSALAEADEPGRVACAALALL--AQE----------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG----  115 (410)
T ss_pred             hHhHHHHHHHHHhhCCChhHHHHHHHHHh--ccC----------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----
Confidence            45678888888853566666665554443  111          11237889999999999999999999986543    


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008          180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL  259 (858)
Q Consensus       180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~  259 (858)
                            .++.+.|+.+|++.  ++.++..++.++..           ......+.+..+|++.++.++..++++|..+- 
T Consensus       116 ------~~a~~~L~~~L~~~--~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~-  175 (410)
T TIGR02270       116 ------RQAEPWLEPLLAAS--EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELP-  175 (410)
T ss_pred             ------hHHHHHHHHHhcCC--ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhc-
Confidence                  24678899999887  99999888877765           11234678999999999999999999998764 


Q ss_pred             CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCC
Q 003008          260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPS  339 (858)
Q Consensus       260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~  339 (858)
                               ....++.|...+.+.   .+.++..|+.+|..+.. +.-         +. ++..+.  ..          
T Consensus       176 ---------~~~a~~~L~~al~d~---~~~VR~aA~~al~~lG~-~~A---------~~-~l~~~~--~~----------  220 (410)
T TIGR02270       176 ---------RRLSESTLRLYLRDS---DPEVRFAALEAGLLAGS-RLA---------WG-VCRRFQ--VL----------  220 (410)
T ss_pred             ---------cccchHHHHHHHcCC---CHHHHHHHHHHHHHcCC-HhH---------HH-HHHHHH--hc----------
Confidence                     235567777777664   45689999998876643 221         11 122210  00          


Q ss_pred             CCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccc
Q 003008          340 LPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLP  419 (858)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~  419 (858)
                               . ..+....+..++...                             +                        
T Consensus       221 ---------~-g~~~~~~l~~~lal~-----------------------------~------------------------  237 (410)
T TIGR02270       221 ---------E-GGPHRQRLLVLLAVA-----------------------------G------------------------  237 (410)
T ss_pred             ---------c-CccHHHHHHHHHHhC-----------------------------C------------------------
Confidence                     0 000011111111111                             0                        


Q ss_pred             ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008          420 WIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV  492 (858)
Q Consensus       420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~  492 (858)
                      ....+..|..++++++  ++..++.+|+.+..          ..+++.|+.++..+.  +++.|..++..++.
T Consensus       238 ~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       238 GPDAQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLITG  296 (410)
T ss_pred             chhHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence            0125677888887654  89999999999777          679999999997654  99999999999997

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.04  E-value=0.013  Score=68.02  Aligned_cols=112  Identities=20%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             CCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcC
Q 003008          710 PLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEG  789 (858)
Q Consensus       710 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g  789 (858)
                      .++.+.-++.|+.+|...+.               ..-+|.|=..+.++.+.+|.-+..|..-...+.+. -. -.....
T Consensus       945 eegtR~vvAECLGkL~l~ep---------------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~-~i-d~~lk~ 1007 (1233)
T KOG1824|consen  945 EEGTRNVVAECLGKLVLIEP---------------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQ-PI-DPLLKQ 1007 (1233)
T ss_pred             hhhhHHHHHHHhhhHHhCCh---------------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCC-cc-CHHHHH
Confidence            34456678889988764332               12478888888999999998888777543333332 11 222233


Q ss_pred             CchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcC
Q 003008          790 GIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQ  842 (858)
Q Consensus       790 ~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~  842 (858)
                      -|.....++++++.+||+.|+.++...+.+.+...    .+.+|.|+.++-++
T Consensus      1008 ~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI----rDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 1008 QIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI----RDLLPELLPLLYSE 1056 (1233)
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH----HHHHHHHHHHHHHh
Confidence            34566788999999999999999988887765432    24456666555444

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.00064  Score=75.59  Aligned_cols=409  Identities=16%  Similarity=0.108  Sum_probs=220.7

Q ss_pred             CcccCCCcHHHHHHHhcC---CCCHHHHHHHHHHHHHcccCCcccHHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003008           96 SSTFGDSYVALFVQMLGL---DYDPLDREQAVEALWKYSLGGKKCIDYIMQF-SGCINLTVNLLRSESSAACEAAAGLLR  171 (858)
Q Consensus        96 ~~~~~~g~i~~lv~lL~~---s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~-~g~i~~Li~lL~~~~~~~~~~a~~aL~  171 (858)
                      +.+++...++.++.+|+.   ++++.+|+.++-+|+.+|.+.-.   -.+.. ...+|-|+.+|.+..+-+|.-++|+|.
T Consensus       383 anvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLs  459 (885)
T KOG2023|consen  383 ANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLS  459 (885)
T ss_pred             HHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHh
Confidence            356677777776665531   57889999999999999874322   22210 125788888889999999999999999


Q ss_pred             HhhcC--chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH--hCCCHHHHHHHHcc---CCH
Q 003008          172 SISSI--NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA--NTDILPLLIKSLED---ENM  244 (858)
Q Consensus       172 nLs~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~---~~~  244 (858)
                      ..+.-  .+.+..... .++..|+..+=..  +..+++.|+.++..+-.+-.  ..++  -.-.+..|+..+..   .+-
T Consensus       460 Rys~wv~~~~~~~~f~-pvL~~ll~~llD~--NK~VQEAAcsAfAtleE~A~--~eLVp~l~~IL~~l~~af~kYQ~KNL  534 (885)
T KOG2023|consen  460 RYSKWVVQDSRDEYFK-PVLEGLLRRLLDS--NKKVQEAACSAFATLEEEAG--EELVPYLEYILDQLVFAFGKYQKKNL  534 (885)
T ss_pred             hhhhhHhcCChHhhhH-HHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHhhcce
Confidence            88752  222322221 1233333333344  89999999999877643211  1111  12223444444433   244


Q ss_pred             HHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccc
Q 003008          245 KVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGA  324 (858)
Q Consensus       245 ~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~l  324 (858)
                      -+...|.++|+.=+...-++.+.++ -.+|+|++-...-+++.+. .-.-+.+|..++.       ....|..|  ... 
T Consensus       535 lILYDAIgtlAdsvg~~Ln~~~Yiq-iLmPPLi~KW~~lsd~DKd-LfPLLEClSsia~-------AL~~gF~P--~~~-  602 (885)
T KOG2023|consen  535 LILYDAIGTLADSVGHALNKPAYIQ-ILMPPLIEKWELLSDSDKD-LFPLLECLSSIAS-------ALGVGFLP--YAQ-  602 (885)
T ss_pred             ehHHHHHHHHHHHHHHhcCcHHHHH-HhccHHHHHHHhcCcccch-HHHHHHHHHHHHH-------HHhccccc--cCH-
Confidence            5778888888887766666665544 3578888733221212221 1123333333332       23334333  111 


Q ss_pred             cccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHh-------ccCCCCCCccchHH----HHhhhhhhhhhhHHHH
Q 003008          325 DAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLL-------GLNVSDKNANIDEA----KMNAMVGRSRQHFLVR  393 (858)
Q Consensus       325 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~-------nL~~~~~~~~i~~~----~~~~li~~~~~~~L~~  393 (858)
                                                  ++-..|...|.       ....++.-...+..    .+.-+-+      |+.
T Consensus       603 ----------------------------~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SG------Lae  648 (885)
T KOG2023|consen  603 ----------------------------PVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSG------LAE  648 (885)
T ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhH------HHH
Confidence                                        11111222222       11111100000000    0000000      110


Q ss_pred             hhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhh
Q 003008          394 IGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLL  472 (858)
Q Consensus       394 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL  472 (858)
                      -            +   ....-..+.+.+...-+..-+.++-++||+.|...|+.++. +.+.. .-.-+..++.|..=+
T Consensus       649 g------------L---g~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v-~p~~~~fl~~lg~Nl  712 (885)
T KOG2023|consen  649 G------------L---GSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHV-IPNLADFLPILGANL  712 (885)
T ss_pred             H------------h---hhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHhhcC
Confidence            0            0   00000223334455556667788899999999999999653 22211 111234455555556


Q ss_pred             cCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCc
Q 003008          473 DHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVN  550 (858)
Q Consensus       473 ~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~  550 (858)
                      ..++..+..+|+||++.++.  ..+.+..+.  ..+..|+..++.+..+..+.+..+.+++.|....++....  -.+..
T Consensus       713 ~~~~isv~nNA~WAiGeia~k~g~~~~~~v~--~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp--~l~~f  788 (885)
T KOG2023|consen  713 NPENISVCNNAIWAIGEIALKMGLKMKQYVS--PVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAP--HLDSF  788 (885)
T ss_pred             ChhhchHHHHHHHHHHHHHHHhchhhhhHHH--HHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcch--hHHHH
Confidence            66678899999999999996  333333322  3566777788878888899999999999998744433221  11111


Q ss_pred             CcHHHHHhhcCCChhHHHHHH-HHHHhhc
Q 003008          551 GSEKGLDAAESLDPSIELTGN-VIEAAVS  578 (858)
Q Consensus       551 ~i~~Li~ll~s~d~~v~~~a~-~l~~L~~  578 (858)
                      .-|+..++=.-.|.+-+.+|. .+|+++.
T Consensus       789 ~~pWc~sl~~i~DneEK~sAFrG~c~mi~  817 (885)
T KOG2023|consen  789 MRPWCTSLRNIDDNEEKESAFRGLCNMIN  817 (885)
T ss_pred             HHHHHHHhcccccchhHHHHHHHHHHhee
Confidence            222333333334555555666 6777654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.0024  Score=72.52  Aligned_cols=410  Identities=15%  Similarity=0.128  Sum_probs=233.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 003008          105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVA  184 (858)
Q Consensus       105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~  184 (858)
                      .-|..||. |.....+..|.+-+..+-....+     +  +...|..++...+.+.+++...-.-|..-+....+-..+ 
T Consensus        38 ~dL~~lLd-Snkd~~KleAmKRIia~iA~G~d-----v--S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-  108 (968)
T KOG1060|consen   38 DDLKQLLD-SNKDSLKLEAMKRIIALIAKGKD-----V--SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-  108 (968)
T ss_pred             HHHHHHHh-ccccHHHHHHHHHHHHHHhcCCc-----H--HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-
Confidence            45888998 65446677777666555443333     1  345688899999999999987766666666655443332 


Q ss_pred             hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-Cc
Q 003008          185 ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-SN  263 (858)
Q Consensus       185 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-~~  263 (858)
                         -|..+-+-|+.+  |+.++-.|+++|..+      |..++.-=.+-++-++.....+-+|..|+.++-.|-.-+ +.
T Consensus       109 ---SIntfQk~L~Dp--N~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~  177 (968)
T KOG1060|consen  109 ---SINTFQKALKDP--NQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ  177 (968)
T ss_pred             ---eHHHHHhhhcCC--cHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence               366777788888  999998888887543      222222112233444556778899999999999997654 44


Q ss_pred             hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCc
Q 003008          264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDG  343 (858)
Q Consensus       264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~  343 (858)
                      +..+.+     .+-.+|...   ++.+.-.|+.+.-.+|-+.  -+           |+.                    
T Consensus       178 k~qL~e-----~I~~LLaD~---splVvgsAv~AF~evCPer--ld-----------LIH--------------------  216 (968)
T KOG1060|consen  178 KDQLEE-----VIKKLLADR---SPLVVGSAVMAFEEVCPER--LD-----------LIH--------------------  216 (968)
T ss_pred             HHHHHH-----HHHHHhcCC---CCcchhHHHHHHHHhchhH--HH-----------Hhh--------------------
Confidence            434432     444466543   4446667777776666431  10           110                    


Q ss_pred             chhhcccCCchhhHHHHHHhccCCCCCCccchHHH----HhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc----
Q 003008          344 TEIERTSQGPSKFGANELLLGLNVSDKNANIDEAK----MNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL----  415 (858)
Q Consensus       344 ~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~----~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~----  415 (858)
                                   .-...||++-.+.     ++.+    ++.++. ...+.|.+........+.-. ..++..+.+    
T Consensus       217 -------------knyrklC~ll~dv-----deWgQvvlI~mL~R-YAR~~l~~P~~~~~~~e~n~-~~~~~~~~~~~~~  276 (968)
T KOG1060|consen  217 -------------KNYRKLCRLLPDV-----DEWGQVVLINMLTR-YARHQLPDPTVVDSSLEDNG-RSCNLKDKYNEIR  276 (968)
T ss_pred             -------------HHHHHHHhhccch-----hhhhHHHHHHHHHH-HHHhcCCCccccccccccCc-ccccccccccccC
Confidence                         0011133332221     1111    111111 00001111100000000000 000000000    


Q ss_pred             ccccccccHH----HHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhh
Q 003008          416 TLLPWIDGVA----RLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLS  491 (858)
Q Consensus       416 ~~l~~~~~i~----~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls  491 (858)
                      ..+.....+.    ..-.+|.+.++.+...+|++.++++-..+.      .+.++.|+.||+++ ..+|......+..++
T Consensus       277 ~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s  349 (968)
T KOG1060|consen  277 TPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSN-REVQYVVLQNIATIS  349 (968)
T ss_pred             CCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcC-CcchhhhHHHHHHHH
Confidence            1112122333    334577889999999999999998754333      34688999998764 566666555555555


Q ss_pred             c-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHH
Q 003008          492 V-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTG  570 (858)
Q Consensus       492 ~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a  570 (858)
                      . .+.    +    .-|.+-...-.+.++..++..-..+|.+|...+   ..      ...++-+..+..+.|.++...+
T Consensus       350 ~~~~~----l----F~P~lKsFfv~ssDp~~vk~lKleiLs~La~es---ni------~~ILrE~q~YI~s~d~~faa~a  412 (968)
T KOG1060|consen  350 IKRPT----L----FEPHLKSFFVRSSDPTQVKILKLEILSNLANES---NI------SEILRELQTYIKSSDRSFAAAA  412 (968)
T ss_pred             hcchh----h----hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc---cH------HHHHHHHHHHHhcCchhHHHHH
Confidence            3 111    1    234444444446666778888888899998722   11      1135566777888887655555


Q ss_pred             H-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008          571 N-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS  624 (858)
Q Consensus       571 ~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~  624 (858)
                      + +|..++.....     +..-.+.-|+.++++++..|...++..+..|.+.++.
T Consensus       413 V~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~  462 (968)
T KOG1060|consen  413 VKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA  462 (968)
T ss_pred             HHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence            5 77666543222     1233567799999999999999999999999876553

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.0052  Score=71.53  Aligned_cols=347  Identities=16%  Similarity=0.153  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHcccCCc------ccHHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHH
Q 003008          120 REQAVEALWKYSLGGK------KCIDYIMQFSGCINLTVNLLRS-ESSAACEAAAGLLRSISSINVYRDLVAECGAIEEI  192 (858)
Q Consensus       120 ~~~a~~~L~~la~~~~------~~~~~ii~~~g~i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~L  192 (858)
                      ..-++.+|.|+...+.      +....   --|..+.++..++. +++.++..|+..+..+..+.++-..|++.|.+..|
T Consensus      1742 v~m~LtAL~Nli~~nPdlasvfgSe~~---lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEIL---LIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHhhCcchhhhccchhh---hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHH
Confidence            4557888888876655      22112   24677788887765 47788888999999999899999999999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc-cCCHHHHHHHHHHHHHHcCCc--CchHH--H
Q 003008          193 TGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE-DENMKVKEAAGGVLANLALSK--SNHNI--L  267 (858)
Q Consensus       193 v~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~nL~~~~--~~~~~--i  267 (858)
                      +.+|.+   -|..+..++.+|+.|+++++.-..-.+.|++.-+..++- +.++..+.+++..|..|..++  ..|..  +
T Consensus      1819 L~lLHS---~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1819 LTLLHS---QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHhc---ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            999987   578999999999999999987666667777777777764 447889999999999998764  22221  1


Q ss_pred             Hh----------CCCHHHHHHHHccCCCCCH-----HHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCc
Q 003008          268 VE----------AGVIPKLAMLLKANVEGSK-----VIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRP  332 (858)
Q Consensus       268 ~~----------~g~i~~Lv~ll~~~~~~~~-----~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~  332 (858)
                      ++          ....+..|.++...++..+     ..+......+..+..+      +.+..--. |-++.        
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~------~y~~QQk~-p~~~W-------- 1960 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGK------LYEQQQKD-PTVKW-------- 1960 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHH------HHHHhccC-Ccccc--------
Confidence            11          1233666666654433211     1112222222222211      00000000 11111        


Q ss_pred             cCCCCCCCCCcch----------------------hhcccCCchhhHHHHHHh-ccCCCCCCccchHHHHhhhhhhhhhh
Q 003008          333 ELHSWPSLPDGTE----------------------IERTSQGPSKFGANELLL-GLNVSDKNANIDEAKMNAMVGRSRQH  389 (858)
Q Consensus       333 ~l~~~~~~~~~~~----------------------~~~~~~~~~~~~a~~aL~-nL~~~~~~~~i~~~~~~~li~~~~~~  389 (858)
                         -++....|..                      .+|+.+ .-..+.+.-+. .++.........+--..++++     
T Consensus      1961 ---~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk-~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~----- 2031 (2235)
T KOG1789|consen 1961 ---NTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPK-LFLTELLEKVLELMSRPTPEQHELDLLTKAFVE----- 2031 (2235)
T ss_pred             ---cCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHH-HHHHHHHHHHHHHhcCCCcccchhHHHHHHHHH-----
Confidence               0000000000                      011111 00011111111 111111111111101112222     


Q ss_pred             HHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHH
Q 003008          390 FLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLV  469 (858)
Q Consensus       390 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv  469 (858)
                       |.|..               |.- -+.++.-|.+|.++.-....+..+-..|.+.|..++.+.-...++.....+..++
T Consensus      2032 -L~r~h---------------P~L-ADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m 2094 (2235)
T KOG1789|consen 2032 -LVRHH---------------PNL-ADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIM 2094 (2235)
T ss_pred             -HHHhC---------------cch-hhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhH
Confidence             33322               110 1445556788888888777666666889999999999999999999988888899


Q ss_pred             HhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhc
Q 003008          470 KLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLK  514 (858)
Q Consensus       470 ~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~  514 (858)
                      ..+...- ...--|+.+|..+..  ..+......+.|.+|.|+.+|.
T Consensus      2095 ~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2095 KSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred             HHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhc
Confidence            8886543 333367788888876  3555667778999999999997

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.89  E-value=4.6e-05  Score=65.21  Aligned_cols=87  Identities=26%  Similarity=0.371  Sum_probs=72.1

Q ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008          424 VARLVLIL-GLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA  502 (858)
Q Consensus       424 i~~Lv~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~  502 (858)
                      ++.|+..| +++++.++..++++|+++..          ..+++.|+.+++++++.||..|+++|+.+.          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            46788888 89999999999999996543          357999999999999999999999999885          2


Q ss_pred             cCChHHHHHhhcCCCccHHHHHHHHHHHH
Q 003008          503 EGVVHPLVNTLKNLDISESLMEKTLDILG  531 (858)
Q Consensus       503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~  531 (858)
                      ...++.|..++.++ .+..++..+..+|+
T Consensus        61 ~~~~~~L~~~l~~~-~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDD-DDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CcHHHHHHHHhhcC
Confidence            34789999999843 45777888888774

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.00046  Score=75.38  Aligned_cols=320  Identities=16%  Similarity=0.122  Sum_probs=182.8

Q ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHH
Q 003008          421 IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIM  500 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l  500 (858)
                      ++.+++.+.-+++.|..++..||..|+|+++-........-...-..|.++..+.+..|+..| ..|-.+-+     +.+
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLik-----dIV  156 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIK-----DIV  156 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHH-----Hhc
Confidence            347888889999999999999999999976533333333334456677777777777776554 33333322     111


Q ss_pred             HHc---CChHHHHHhhcC--CCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHH
Q 003008          501 EAE---GVVHPLVNTLKN--LDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIE  574 (858)
Q Consensus       501 ~~~---g~i~~Li~lL~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~  574 (858)
                      .+.   =-++.++.+|+.  ...++..|.....-|..+-.   .+..+..-.-...++.|...|+++.++++..+- ++.
T Consensus       157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds---~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~  233 (675)
T KOG0212|consen  157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS---VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS  233 (675)
T ss_pred             cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc---CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            111   124444444432  12236677776665555533   111111111123467788999999999986665 666


Q ss_pred             HhhccccchhhhH-hhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCc
Q 003008          575 AAVSETTTSYGKV-LDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDI  653 (858)
Q Consensus       575 ~L~~~~~~~~~~i-~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~  653 (858)
                      +...+-.+. ... .-...++.++.-+.++++.+|..|+..+.....-.+..-..                         
T Consensus       234 ~fL~eI~s~-P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~-------------------------  287 (675)
T KOG0212|consen  234 EFLAEIRSS-PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL-------------------------  287 (675)
T ss_pred             HHHHHHhcC-ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh-------------------------
Confidence            655433332 222 23456788999999999999999988776665433221111                         


Q ss_pred             CCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCC
Q 003008          654 EGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQD  733 (858)
Q Consensus       654 ~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~  733 (858)
                                          ...+.+..++....+.... ..+..+.+               +-..+.++.+...    
T Consensus       288 --------------------~~s~il~~iLpc~s~~e~~-~i~~~a~~---------------~n~~l~~l~s~~~----  327 (675)
T KOG0212|consen  288 --------------------YLSGILTAILPCLSDTEEM-SIKEYAQM---------------VNGLLLKLVSSER----  327 (675)
T ss_pred             --------------------hhhhhhhhcccCCCCCccc-cHHHHHHH---------------HHHHHHHHHhhhh----
Confidence                                1111122222221111000 00111100               0001111111100    


Q ss_pred             CCccchhhhhhhc-chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHH
Q 003008          734 FENPINMEVTLYE-AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAI  812 (858)
Q Consensus       734 ~~~~~~~~i~~~~-~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~a  812 (858)
                          .+..+ +.| .+..+.+.+.++..++|.++..=+..|....+  +.-........+.|+.-|++.+++|...++..
T Consensus       328 ----~~~~i-d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p--~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~l  400 (675)
T KOG0212|consen  328 ----LKEEI-DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP--GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSL  400 (675)
T ss_pred             ----hcccc-chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc--chhhhhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence                01011 322 36666678889999999999887777655443  23344556667888999999999999999999


Q ss_pred             HHhhhcCccc
Q 003008          813 LYNLSMDSEN  822 (858)
Q Consensus       813 L~nL~~~~~~  822 (858)
                      |.+++.++..
T Consensus       401 la~i~~s~~~  410 (675)
T KOG0212|consen  401 LASICSSSNS  410 (675)
T ss_pred             HHHHhcCccc
Confidence            9999988665

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.82  E-value=2.7e-05  Score=55.82  Aligned_cols=41  Identities=27%  Similarity=0.375  Sum_probs=38.2

Q ss_pred             CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008          219 DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL  259 (858)
Q Consensus       219 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~  259 (858)
                      +++++..+++.|++++|+++|+++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.79  E-value=0.0031  Score=69.04  Aligned_cols=155  Identities=26%  Similarity=0.299  Sum_probs=122.1

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA  502 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~  502 (858)
                      .+..++.++.+++..++..++..++....          .-+++.|..++.+.++.+|..|+.+|+.+..          
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------  103 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD----------  103 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------
Confidence            67888999999999999999999888665          5689999999999999999999999988774          


Q ss_pred             cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhH------------HHHH
Q 003008          503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSI------------ELTG  570 (858)
Q Consensus       503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v------------~~~a  570 (858)
                      ...++.|+.++.. +.+..++..+..+|..+..             ...+.+++..+.+.+..+            +..+
T Consensus       104 ~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~-------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         104 PEAVPPLVELLEN-DENEGVRAAAARALGKLGD-------------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCc-------------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence            2358899999983 4558899999999999877             234888888888766332            2222


Q ss_pred             H-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008          571 N-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID  622 (858)
Q Consensus       571 ~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~  622 (858)
                      . .+           ..+-+...++.+..++.+.+..++..|..+|..+....
T Consensus       170 ~~~l-----------~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         170 AEAL-----------GELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             HHHH-----------HHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence            2 11           22333456788999999999999999999998886654

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.0017  Score=71.14  Aligned_cols=357  Identities=15%  Similarity=0.110  Sum_probs=208.6

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-h
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-Y  179 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~  179 (858)
                      ++.++.++.-++ +.|..+|.+|...|.|++......+  +.-.......+.++-.+.+..++. ++..|-.+-.+-. -
T Consensus        83 ~~iv~Pv~~cf~-D~d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte  158 (675)
T KOG0212|consen   83 EKIVPPVLNCFS-DQDSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTE  158 (675)
T ss_pred             HHhhHHHHHhcc-CccceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccc
Confidence            566777888886 8888999999999999986544321  111123344455555555555554 6666665544321 1


Q ss_pred             HH-HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008          180 RD-LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA  258 (858)
Q Consensus       180 ~~-~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~  258 (858)
                      +. .+--.+.||.|-+-+..-  ++.++...+.-|.-|=..++-...---...++-|+.+|.+.+++++..+-.+|.++-
T Consensus       159 ~~~tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  159 SASTFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             cccccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            11 222244577777777776  888998888888777655543322223456778899999999999988777776653


Q ss_pred             CCcCchHHH-HhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCC
Q 003008          259 LSKSNHNIL-VEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSW  337 (858)
Q Consensus       259 ~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~  337 (858)
                      ..-.+.... --...++.++.-+.+.   .+.++..|..-+..+..-+...-...-.|++..                  
T Consensus       237 ~eI~s~P~s~d~~~~i~vlv~~l~ss---~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~------------------  295 (675)
T KOG0212|consen  237 AEIRSSPSSMDYDDMINVLVPHLQSS---EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTA------------------  295 (675)
T ss_pred             HHHhcCccccCcccchhhccccccCC---cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhh------------------
Confidence            221122221 2234577888877654   344777776665555543221111111221111                  


Q ss_pred             CCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHH--HHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc
Q 003008          338 PSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEA--KMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL  415 (858)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~--~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~  415 (858)
                                              +..+..+.++..+.+.  .++.       +.+...+....+               
T Consensus       296 ------------------------iLpc~s~~e~~~i~~~a~~~n~-------~l~~l~s~~~~~---------------  329 (675)
T KOG0212|consen  296 ------------------------ILPCLSDTEEMSIKEYAQMVNG-------LLLKLVSSERLK---------------  329 (675)
T ss_pred             ------------------------cccCCCCCccccHHHHHHHHHH-------HHHHHHhhhhhc---------------
Confidence                                    1111111111001111  0010       012222211111               


Q ss_pred             ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChh
Q 003008          416 TLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRG  495 (858)
Q Consensus       416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~  495 (858)
                      ..+-....+..|..++.++..+.+..+..-+..+-....++........-+.|..-|++.+++|...+...+.+++.+++
T Consensus       330 ~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  330 EEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             cccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence            11222337788889999999999999999888877666666666677888899999999999999999999999999655


Q ss_pred             HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                      .+...   ..+..|+.+..  ++...+...+..++..+|.
T Consensus       410 ~~~~~---~fl~sLL~~f~--e~~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  410 SPNLR---KFLLSLLEMFK--EDTKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             cccHH---HHHHHHHHHHh--hhhHHHHhhhhHHHHHHHH
Confidence            43210   12334444444  2234455567666666664

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.01  Score=67.58  Aligned_cols=370  Identities=15%  Similarity=0.098  Sum_probs=205.6

Q ss_pred             CCCcHHHHHHHhcC-C-----CCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 003008          100 GDSYVALFVQMLGL-D-----YDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSI  173 (858)
Q Consensus       100 ~~g~i~~lv~lL~~-s-----~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nL  173 (858)
                      -.+.+|.|+++|.. +     +|+..-..|..+|.-++.-   +.+.|+  .-++|-+=+-+++++-.-|+.|+.+++.+
T Consensus       317 ~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv--~~Vl~Fiee~i~~pdwr~reaavmAFGSI  391 (859)
T KOG1241|consen  317 LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIV--PHVLPFIEENIQNPDWRNREAAVMAFGSI  391 (859)
T ss_pred             HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccch--hhhHHHHHHhcCCcchhhhhHHHHHHHhh
Confidence            35778889998842 2     2234445555566555532   123454  24454444577888889999999999998


Q ss_pred             hcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchH-HHHHhCCCHHHHHHHHccCCHHHHHHH
Q 003008          174 SSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHR-LKIANTDILPLLIKSLEDENMKVKEAA  250 (858)
Q Consensus       174 s~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~a  250 (858)
                      -..+ +.+..-...+++|.++.++.++  ...++..++|+|+.++.. ++.+ ...-..+.++.+++-|.+ .|.+..++
T Consensus       392 l~gp~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~  468 (859)
T KOG1241|consen  392 LEGPEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNV  468 (859)
T ss_pred             hcCCchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHH
Confidence            7765 3555555577899999999977  888889999999999854 3222 222235556666666655 57899999


Q ss_pred             HHHHHHHcCC-----cCc-hHHHHhCCCHHHHHH-HH---ccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCccc
Q 003008          251 GGVLANLALS-----KSN-HNILVEAGVIPKLAM-LL---KANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPV  319 (858)
Q Consensus       251 ~~~L~nL~~~-----~~~-~~~i~~~g~i~~Lv~-ll---~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~  319 (858)
                      +|++.+|+..     .++ ...... ...+.++. |+   ...+.....+|..|-.+|..+..+ ++....++..=....
T Consensus       469 CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i  547 (859)
T KOG1241|consen  469 CWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI  547 (859)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            9999999732     111 111221 22333333 33   221112234777888889888874 444433322111110


Q ss_pred             ccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHh-ccCCCCCCccchHHHHhhhhhhhhhhHHHHhhccc
Q 003008          320 PMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLL-GLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIE  398 (858)
Q Consensus       320 ~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~-nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~  398 (858)
                       +.++                               .++..  . -++..+.   ..-..++.+++...|..+.+.+.  
T Consensus       548 -l~kl-------------------------------~q~i~--~~~l~~~dr---~q~~eLQs~Lc~~Lq~i~rk~~~--  588 (859)
T KOG1241|consen  548 -LEKL-------------------------------DQTIS--SQILSLADR---AQLNELQSLLCNTLQSIIRKVGS--  588 (859)
T ss_pred             -HHHH-------------------------------HHHHH--HHhccHhhH---HHHHHHHHHHHHHHHHHHHHccc--
Confidence             1111                               00000  0 0110110   00012233333222222333331  


Q ss_pred             ccCCCCCCCCCCcccccccccc-cccHHHHHHHhCC-CCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhh-cCC
Q 003008          399 SEDGRKPQSEFPIDRQLTLLPW-IDGVARLVLILGL-EDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLL-DHS  475 (858)
Q Consensus       399 ~~~~~~~~l~~~~~~~~~~l~~-~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL-~~~  475 (858)
                                       +.... +..+..++.++++ .+..+.+.|..+++.+..+-..+..-.-....|.|..-| +..
T Consensus       589 -----------------~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~  651 (859)
T KOG1241|consen  589 -----------------DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ  651 (859)
T ss_pred             -----------------cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch
Confidence                             01111 2266778888888 445566777777776543333333333455677777767 444


Q ss_pred             cHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhc
Q 003008          476 SDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRIL  534 (858)
Q Consensus       476 ~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~  534 (858)
                      +..|-..+++..+.|+..-+-.-...-.+.+..|++.|.++..+-.+|-...++.+.++
T Consensus       652 e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIA  710 (859)
T KOG1241|consen  652 EYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIA  710 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHH
Confidence            56777788888888886211111112234677888888876655566666666655554

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.70  E-value=0.0061  Score=66.75  Aligned_cols=157  Identities=22%  Similarity=0.263  Sum_probs=123.9

Q ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhcChhHHHH
Q 003008          421 IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSVSRGVCQI  499 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~  499 (858)
                      +..++.+..++.+.++.++..|+.+|+.+..          ..+++.|+.++. +++..+|..++++|+.+..       
T Consensus        73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------  135 (335)
T COG1413          73 EEAVPLLRELLSDEDPRVRDAAADALGELGD----------PEAVPPLVELLENDENEGVRAAAARALGKLGD-------  135 (335)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------
Confidence            3488999999999999999999999999766          568999999998 6889999999999999874       


Q ss_pred             HHHcCChHHHHHhhcCCC----------ccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHH
Q 003008          500 MEAEGVVHPLVNTLKNLD----------ISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELT  569 (858)
Q Consensus       500 l~~~g~i~~Li~lL~~~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~  569 (858)
                         ...+.+++..+.+..          ....++..+...|..+..             ...++.++..+.+.+..++..
T Consensus       136 ---~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-------------~~~~~~l~~~l~~~~~~vr~~  199 (335)
T COG1413         136 ---ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD-------------PEAIPLLIELLEDEDADVRRA  199 (335)
T ss_pred             ---hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-------------hhhhHHHHHHHhCchHHHHHH
Confidence               234778888887433          112466667777777765             335888999999999999988


Q ss_pred             HH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          570 GN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       570 a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                      +. ++..+..+.         ....+.+...+++.+..++..++..|+.+-
T Consensus       200 Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~  241 (335)
T COG1413         200 AASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIG  241 (335)
T ss_pred             HHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence            88 776554433         134578888999999999999988887764

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.054  Score=55.73  Aligned_cols=165  Identities=12%  Similarity=0.168  Sum_probs=123.0

Q ss_pred             CCHHHHHHHHHHHHHcccCCccc-HHH--HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHH
Q 003008          115 YDPLDREQAVEALWKYSLGGKKC-IDY--IMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEE  191 (858)
Q Consensus       115 ~d~~~~~~a~~~L~~la~~~~~~-~~~--ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~  191 (858)
                      +|..++.-++..++.+..+.+.+ +..  .+...|.++.++...-.+++++...|...+..|+..++.-..|.+......
T Consensus        94 ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDd  173 (524)
T KOG4413|consen   94 DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDD  173 (524)
T ss_pred             CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCCh
Confidence            45567777777777776654421 112  224789999999999999999999999999999999988888887766654


Q ss_pred             H--HHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHcCCcCchHHH
Q 003008          192 I--TGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNIL  267 (858)
Q Consensus       192 L--v~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~i  267 (858)
                      +  ..+....  +.-.+......+..++ ..+......-..|.+..|..=++. .+.-++..+......|+....++..+
T Consensus       174 lhlrnlaakc--ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefl  251 (524)
T KOG4413|consen  174 LHLRNLAAKC--NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFL  251 (524)
T ss_pred             HHHhHHHhhh--hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhc
Confidence            4  3333333  5566667777777775 556556666678888877777766 46678889999999999999999999


Q ss_pred             HhCCCHHHHHHHHc
Q 003008          268 VEAGVIPKLAMLLK  281 (858)
Q Consensus       268 ~~~g~i~~Lv~ll~  281 (858)
                      .+.|.|..+-....
T Consensus       252 aQeglIdlicnIIs  265 (524)
T KOG4413|consen  252 AQEGLIDLICNIIS  265 (524)
T ss_pred             chhhHHHHHHHHhh
Confidence            99898888777764

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.66  E-value=0.03  Score=61.43  Aligned_cols=171  Identities=12%  Similarity=0.024  Sum_probs=123.5

Q ss_pred             CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHH
Q 003008          451 INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDIL  530 (858)
Q Consensus       451 ~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L  530 (858)
                      .+++.+..+.-....+.+..++-+++.+||..+..+++-+..+.+.-+.+.+.+.--.++.-|........-|+.|.+.+
T Consensus        13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkli   92 (371)
T PF14664_consen   13 RHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLI   92 (371)
T ss_pred             hCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHH
Confidence            34444444444445555554444555999999999999999988888888888765556665654444566788888888


Q ss_pred             HHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHH
Q 003008          531 GRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQR  609 (858)
Q Consensus       531 ~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~  609 (858)
                      ..+..-.    ......+.+.+..++...++++...+..++ .++.++--..   +.+..+||+..|++.+-++...+.+
T Consensus        93 R~~l~~~----~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~  165 (371)
T PF14664_consen   93 RAFLEIK----KGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISE  165 (371)
T ss_pred             HHHHHhc----CCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHH
Confidence            8776521    111234566788899999988777777777 8887764443   4578899999999999887767888


Q ss_pred             HHHHHHHHhhcCCcchHHH
Q 003008          610 KAASILEFITIIDPSMDTI  628 (858)
Q Consensus       610 ~a~~~L~~l~~~~~~~~~~  628 (858)
                      ..+.++-.+...+..+.-+
T Consensus       166 ~l~~~lL~lLd~p~tR~yl  184 (371)
T PF14664_consen  166 SLLDTLLYLLDSPRTRKYL  184 (371)
T ss_pred             HHHHHHHHHhCCcchhhhh
Confidence            8889998888887777655

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.62  E-value=0.22  Score=56.81  Aligned_cols=149  Identities=13%  Similarity=0.157  Sum_probs=92.4

Q ss_pred             cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHH---HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc
Q 003008          464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVC---QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM  540 (858)
Q Consensus       464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~---~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~  540 (858)
                      .+..+...|+++++.+|++|+..++.++.--..+   +.+...|.  .|...|.  ++.+++.-....++..+... ...
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylg--eeypEvLgsILgAikaI~nv-igm  874 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLG--EEYPEVLGSILGAIKAIVNV-IGM  874 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcC--cccHHHHHHHHHHHHHHHHh-ccc
Confidence            4566677899999999999999999888632222   22333332  2344554  33455555544444443320 000


Q ss_pred             ccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhc---cccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHH
Q 003008          541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVS---ETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILE  616 (858)
Q Consensus       541 ~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~---~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~  616 (858)
                       .|..=--.+.+|.|.-.|++.+..++.|++ .+..++.   +..+..+.|+   .---|+++|.+.+.++++.|..+++
T Consensus       875 -~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG  950 (1172)
T KOG0213|consen  875 -TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFG  950 (1172)
T ss_pred             -cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             000001135688888899999999999998 5555542   2222113332   2235889999999999999999999


Q ss_pred             HhhcC
Q 003008          617 FITII  621 (858)
Q Consensus       617 ~l~~~  621 (858)
                      +++..
T Consensus       951 ~Iaka  955 (1172)
T KOG0213|consen  951 YIAKA  955 (1172)
T ss_pred             HHHHh
Confidence            99853

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.58  E-value=0.00029  Score=60.23  Aligned_cols=84  Identities=20%  Similarity=0.290  Sum_probs=66.6

Q ss_pred             hHHHHHHh-ccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHH
Q 003008          748 IPRLIEQI-KSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAI  826 (858)
Q Consensus       748 i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i  826 (858)
                      |+.|++.| +++++.+|..|+.+|+++-..            ..++.|+++++++++.||..|+.+|..+.         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDP------------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH------------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899988 799999999999999865322            23599999999999999999999999873         


Q ss_pred             HHcCchHHHHHhhhcCChhH--HHHHHHH
Q 003008          827 IAAGAVPALRRIVLSQRPQW--TRALRLL  853 (858)
Q Consensus       827 ~~~g~v~~L~~ll~~~~~~~--~~al~~l  853 (858)
                       ...+++.|.+++.+.+...  ..|..+|
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence             3346789999887765444  6666665

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.012  Score=60.45  Aligned_cols=206  Identities=13%  Similarity=0.123  Sum_probs=146.5

Q ss_pred             ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHH--HHhhcCCcHHHHHHHHHHHHHhhc-ChhH
Q 003008          420 WIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYL--VKLLDHSSDAVRLATTHALERLSV-SRGV  496 (858)
Q Consensus       420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~L--v~LL~~~~~~v~~~a~~aL~~Ls~-~~~~  496 (858)
                      +.+..+.++..+..+|.++-..|...+..++..+..-..+++......+  .+|--..+.-+|......+..+.+ +++.
T Consensus       126 NaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpes  205 (524)
T KOG4413|consen  126 NAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPES  205 (524)
T ss_pred             hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHH
Confidence            3457788888899999999999999999999999988888888877654  444445566677777788888877 8888


Q ss_pred             HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC--CChhHHHHHH-HH
Q 003008          497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES--LDPSIELTGN-VI  573 (858)
Q Consensus       497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s--~d~~v~~~a~-~l  573 (858)
                      .....+.|.+..|..=++ +.+|.-+...+......|..   ....+..+.+.|.+..+.+.+..  .||--+..++ ..
T Consensus       206 aneckkSGLldlLeaElk-GteDtLVianciElvteLae---teHgreflaQeglIdlicnIIsGadsdPfekfralmgf  281 (524)
T KOG4413|consen  206 ANECKKSGLLDLLEAELK-GTEDTLVIANCIELVTELAE---TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGF  281 (524)
T ss_pred             HhHhhhhhHHHHHHHHhc-CCcceeehhhHHHHHHHHHH---HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHH
Confidence            888899999999988888 55566677777777777776   44445555556666666666653  4565556555 33


Q ss_pred             HHhhccc----cchhhhHhhc--cchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHh
Q 003008          574 EAAVSET----TTSYGKVLDS--VFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIIS  630 (858)
Q Consensus       574 ~~L~~~~----~~~~~~i~~~--g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~  630 (858)
                      ..+....    ... +.+.+.  -.|...++...+.+++.+..|..+++.+-.+.+....+.+
T Consensus       282 gkffgkeaimdvse-eaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllk  343 (524)
T KOG4413|consen  282 GKFFGKEAIMDVSE-EAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLK  343 (524)
T ss_pred             HHHhcchHHhhcCH-HHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhc
Confidence            3222211    111 223222  3455566777889999999999999999887777666643

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.50  E-value=0.011  Score=66.84  Aligned_cols=180  Identities=12%  Similarity=0.095  Sum_probs=118.5

Q ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-Chhh---HHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhH
Q 003008          421 IDGVARLVLILGLEDERAIARAAESIADISI-NEHM---RMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGV  496 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~---~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~  496 (858)
                      .+.+|.|..+|++.+++++.++...++.++. .++.   |+-+.   ..--|+.+|++.+.++|++|...++-++.-   
T Consensus       882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iaka---  955 (1172)
T KOG0213|consen  882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKA---  955 (1172)
T ss_pred             hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHh---
Confidence            4578899999999999999999999999764 4442   22221   233578889999999999999999998851   


Q ss_pred             HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008          497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEA  575 (858)
Q Consensus       497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~  575 (858)
                         +--+.++..|++-|+..+  -+.+...+.+++-.+..+         .+...+|.|++--..++..|+...+ +++.
T Consensus       956 ---IGPqdVLatLlnnLkvqe--Rq~RvcTtvaIaIVaE~c---------~pFtVLPalmneYrtPe~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen  956 ---IGPQDVLATLLNNLKVQE--RQNRVCTTVAIAIVAETC---------GPFTVLPALMNEYRTPEANVQNGVLKALSF 1021 (1172)
T ss_pred             ---cCHHHHHHHHHhcchHHH--HHhchhhhhhhhhhhhhc---------CchhhhHHHHhhccCchhHHHHhHHHHHHH
Confidence               111223444444444111  222333444444444422         2233577777766667778887777 8888


Q ss_pred             hhccccch-hhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008          576 AVSETTTS-YGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID  622 (858)
Q Consensus       576 L~~~~~~~-~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~  622 (858)
                      +.+.-... +.-+  .-..|.|-..|-+.+..-+..|..++..++.+.
T Consensus      1022 ~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             HHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence            87533221 0112  345678888888999999999999999998764

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.038  Score=62.11  Aligned_cols=341  Identities=14%  Similarity=0.077  Sum_probs=191.1

Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHH
Q 003008          146 GCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK  225 (858)
Q Consensus       146 g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~  225 (858)
                      ..+..++.-+..+++.+++....+|..+....+....   .-..+.+.+++..+  +..-+..++..++.+..+. .-..
T Consensus        96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~~--~~~~~~~aa~~~ag~v~g~-~i~~  169 (569)
T KOG1242|consen   96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTST--KIAERAGAAYGLAGLVNGL-GIES  169 (569)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhccc--cHHHHhhhhHHHHHHHcCc-HHhh
Confidence            3556677777778888888777777666443221111   11356777788866  7777777888877776544 3344


Q ss_pred             HHhCCCHHHHHHHHccCCHHHHHH-HHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008          226 IANTDILPLLIKSLEDENMKVKEA-AGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD  304 (858)
Q Consensus       226 i~~~g~i~~Lv~ll~~~~~~~~~~-a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~  304 (858)
                      +.+.+.+..|.+..+.......+. +.-+....+..-.   ...+.+.++.+..+|.+-.+..+.+|+.|..+...+-..
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~  246 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC  246 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh
Confidence            556777778877777664433332 2222221111100   223445556666655443333344444443332211110


Q ss_pred             hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhh
Q 003008          305 DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVG  384 (858)
Q Consensus       305 ~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~  384 (858)
                             ....+++.                                                                 
T Consensus       247 -------~~~~aVK~-----------------------------------------------------------------  254 (569)
T KOG1242|consen  247 -------LSAYAVKL-----------------------------------------------------------------  254 (569)
T ss_pred             -------cCcchhhH-----------------------------------------------------------------
Confidence                   01111111                                                                 


Q ss_pred             hhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCc
Q 003008          385 RSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGA  464 (858)
Q Consensus       385 ~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~  464 (858)
                                                            .+++++.-+....+..+..++..|+.+..+...+-.......
T Consensus       255 --------------------------------------llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~i  296 (569)
T KOG1242|consen  255 --------------------------------------LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDL  296 (569)
T ss_pred             --------------------------------------hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHh
Confidence                                                  122222222222445566677777776666666666677889


Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccc
Q 003008          465 IKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKF  544 (858)
Q Consensus       465 i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  544 (858)
                      ||.|..-|.+.++++|.++..++.+++.--++....   -.+|.|++.+.+++.  .    .-.|+..|..+.  +  . 
T Consensus       297 iP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~--~----~~e~~~~L~~tt--F--V-  362 (569)
T KOG1242|consen  297 IPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSC--Y----TPECLDSLGATT--F--V-  362 (569)
T ss_pred             hHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCccc--c----hHHHHHhhccee--e--e-
Confidence            999999999999999999999999998844433321   147888888886661  1    223344444311  0  0 


Q ss_pred             ccccCcC----cHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhh--ccchhHHHHhhcCCCHHHHHHHHHHHHH
Q 003008          545 YDIPVNG----SEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLD--SVFIGRMIGIMKTSYPDLQRKAASILEF  617 (858)
Q Consensus       545 ~i~~~~~----i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~  617 (858)
                      ...+.-.    +|.+.+-+...+.+.++.++ .+.|++.--+.. ..+..  -..+|.|-..+.+..|+++..++++|+.
T Consensus       363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp-~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~  441 (569)
T KOG1242|consen  363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP-KDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGA  441 (569)
T ss_pred             eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH-HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Confidence            0111112    33444445555666777777 888887543222 22211  1234555555566789999999999977


Q ss_pred             hhc
Q 003008          618 ITI  620 (858)
Q Consensus       618 l~~  620 (858)
                      +..
T Consensus       442 l~e  444 (569)
T KOG1242|consen  442 LLE  444 (569)
T ss_pred             HHH
Confidence            643

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.46  E-value=0.059  Score=59.11  Aligned_cols=170  Identities=14%  Similarity=0.088  Sum_probs=128.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCchhHH
Q 003008          104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSINVYRD  181 (858)
Q Consensus       104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~~~~~  181 (858)
                      .+.+..++= +++..+|..+.++++.+..+...- +.+. +.+.--.++..|..+  +...|++|....+.+..-+....
T Consensus        27 ~~~i~~~lL-~~~~~vraa~yRilRy~i~d~~~l-~~~~-~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~  103 (371)
T PF14664_consen   27 GERIQCMLL-SDSKEVRAAGYRILRYLISDEESL-QILL-KLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK  103 (371)
T ss_pred             HHHHHHHHC-CCcHHHHHHHHHHHHHHHcCHHHH-HHHH-HcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence            344444332 445899999999999998877763 3444 677766677777665  56789999999988865432221


Q ss_pred             HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc
Q 003008          182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK  261 (858)
Q Consensus       182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~  261 (858)
                      . .-.|++..++.+..+.  +...+..|..+|+.++..+  -..+.+.||++.|++.+.++..++.+..+.++..+-..+
T Consensus       104 ~-~~~~vvralvaiae~~--~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  104 E-IPRGVVRALVAIAEHE--DDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP  178 (371)
T ss_pred             c-CCHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence            1 2456789999999997  8899999999999999643  245668999999999998887678899999999999999


Q ss_pred             CchHHHHhCCCHHHHHHHHc
Q 003008          262 SNHNILVEAGVIPKLAMLLK  281 (858)
Q Consensus       262 ~~~~~i~~~g~i~~Lv~ll~  281 (858)
                      ..|..+...--++.++.-+.
T Consensus       179 ~tR~yl~~~~dL~~l~apft  198 (371)
T PF14664_consen  179 RTRKYLRPGFDLESLLAPFT  198 (371)
T ss_pred             chhhhhcCCccHHHHHHhhh
Confidence            98887765444777776553

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.18  Score=58.02  Aligned_cols=143  Identities=17%  Similarity=0.136  Sum_probs=88.1

Q ss_pred             HHHHHHccCCHHHHHHHHH-HHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHh
Q 003008          150 LTVNLLRSESSAACEAAAG-LLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIAN  228 (858)
Q Consensus       150 ~Li~lL~~~~~~~~~~a~~-aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~  228 (858)
                      -|.++|.+..+..+..|+. .+.-++.+.+...      ..|.+|+...+.  ++++++..---|..-+-.+.+-..+  
T Consensus        39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVask--n~EVKkLVyvYLlrYAEeqpdLALL--  108 (968)
T KOG1060|consen   39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASK--NIEVKKLVYVYLLRYAEEQPDLALL--  108 (968)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhcc--CHHHHHHHHHHHHHHhhcCCCceee--
Confidence            4566777765555544544 4444466555222      468888888887  8999887766665555444333222  


Q ss_pred             CCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-Chhh
Q 003008          229 TDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYY  307 (858)
Q Consensus       229 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~  307 (858)
                        -|..+-+-|+.+++.+|..|+++|..+      |..++.-=.+-.+-+..   .+-++.+|..|+.|+-.|=. +++.
T Consensus       109 --SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~---~D~s~yVRk~AA~AIpKLYsLd~e~  177 (968)
T KOG1060|consen  109 --SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAV---TDPSPYVRKTAAHAIPKLYSLDPEQ  177 (968)
T ss_pred             --eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHh---cCCcHHHHHHHHHhhHHHhcCChhh
Confidence              355666778999999999999998765      33222211111222222   23367799999999988876 5666


Q ss_pred             HHHHHH
Q 003008          308 RILIIE  313 (858)
Q Consensus       308 ~~~i~~  313 (858)
                      +.++.+
T Consensus       178 k~qL~e  183 (968)
T KOG1060|consen  178 KDQLEE  183 (968)
T ss_pred             HHHHHH
Confidence            555443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.039  Score=63.46  Aligned_cols=301  Identities=15%  Similarity=0.118  Sum_probs=176.0

Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccccc
Q 003008          467 YLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYD  546 (858)
Q Consensus       467 ~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i  546 (858)
                      .|.+=|++.+.-++-.|..+|++++..+-.|.      ..|.+..+++.++  +.+++.|+.|...+-...  +..    
T Consensus       111 slknDL~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~--~~irKKA~Lca~r~irK~--P~l----  176 (866)
T KOG1062|consen  111 SLKNDLNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRD--PYIRKKAALCAVRFIRKV--PDL----  176 (866)
T ss_pred             HHHhhccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCC--HHHHHHHHHHHHHHHHcC--chH----
Confidence            34445678888899999999999986433222      4677778888555  889999999998887621  111    


Q ss_pred             ccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhc---------------CCCHHHHHH
Q 003008          547 IPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMK---------------TSYPDLQRK  610 (858)
Q Consensus       547 ~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~---------------s~~~~v~~~  610 (858)
                       ...-++...++|.+.+..|...++ .+..++...........+  ..+.++..|+               -++|-+|..
T Consensus       177 -~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~  253 (866)
T KOG1062|consen  177 -VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR  253 (866)
T ss_pred             -HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH
Confidence             122366777888888888887777 444454332111122333  4555666654               146789999


Q ss_pred             HHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhc
Q 003008          611 AASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQ  690 (858)
Q Consensus       611 a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~  690 (858)
                      .++.|+-+-++++.....|        ..++. ++..+++.+-    +         .+..++  -.++..+++...++ 
T Consensus       254 iLrlLriLGq~d~daSd~M--------~DiLa-qvatntdssk----N---------~GnAIL--YE~V~TI~~I~~~~-  308 (866)
T KOG1062|consen  254 ILRLLRILGQNDADASDLM--------NDILA-QVATNTDSSK----N---------AGNAIL--YECVRTIMDIRSNS-  308 (866)
T ss_pred             HHHHHHHhcCCCccHHHHH--------HHHHH-HHHhcccccc----c---------chhHHH--HHHHHHHHhccCCc-
Confidence            9999999888765544332        12220 2222222200    0         000000  11222233322211 


Q ss_pred             ccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCC--------------CCCCCccchhhhhhhcchHHHHHHhc
Q 003008          691 TINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGP--------------DQDFENPINMEVTLYEAIPRLIEQIK  756 (858)
Q Consensus       691 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~--------------~~~~~~~~~~~i~~~~~i~~Lv~lL~  756 (858)
                                           +.+.-...++.+++...+-              ........++       =..++..|+
T Consensus       309 ---------------------~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-------r~tIleCL~  360 (866)
T KOG1062|consen  309 ---------------------GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-------RSTILECLK  360 (866)
T ss_pred             ---------------------hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-------HHHHHHHhc
Confidence                                 1122334455555443331              0111111111       246788899


Q ss_pred             cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC--ccch-------H---
Q 003008          757 SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD--SENH-------S---  824 (858)
Q Consensus       757 ~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~--~~~~-------~---  824 (858)
                      +++..+|..|..-+-.|+..+   |.+.|+     ..|+..|...+++.+..++.-+.-++..  +..+       .   
T Consensus       361 DpD~SIkrralELs~~lvn~~---Nv~~mv-----~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~  432 (866)
T KOG1062|consen  361 DPDVSIKRRALELSYALVNES---NVRVMV-----KELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLK  432 (866)
T ss_pred             CCcHHHHHHHHHHHHHHhccc---cHHHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence            999999999999887766443   566666     6788889888999998888877777643  2221       1   


Q ss_pred             ---HHHHcCchHHHHHhhhcCChh
Q 003008          825 ---AIIAAGAVPALRRIVLSQRPQ  845 (858)
Q Consensus       825 ---~i~~~g~v~~L~~ll~~~~~~  845 (858)
                         ..+...++..++.++.+.-++
T Consensus       433 ~aG~~V~~dv~~nll~LIa~~~~e  456 (866)
T KOG1062|consen  433 TAGDFVNDDVVNNLLRLIANAFQE  456 (866)
T ss_pred             hcccccchhhHHHHHHHHhcCCcc
Confidence               133445888888888777443

>PF05536 Neurochondrin: Neurochondrin

Probab=97.37  E-value=0.0025  Score=73.49  Aligned_cols=154  Identities=20%  Similarity=0.200  Sum_probs=123.9

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHhhcCch----hHHHHHhcCcHHHHHHHhcCCC-----CCHHHHHHHHHHHHHhc
Q 003008          147 CINLTVNLLRSESSAACEAAAGLLRSISSINV----YRDLVAECGAIEEITGLLTRPS-----LTSEVKEQSMCTLWNLS  217 (858)
Q Consensus       147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~----~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~~~a~~~L~nLs  217 (858)
                      .+...+.+|+..+++.|-.++..+.++..+.+    .++.+.++=+.+-+-+||++++     .....+..++.+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            45677889999998888888888889877554    3456777667788888999843     13466778999999999


Q ss_pred             cCcchHHHHHhCCCHHHHHHHHccCCH-HHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHH
Q 003008          218 VDKKHRLKIANTDILPLLIKSLEDENM-KVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARN  296 (858)
Q Consensus       218 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~  296 (858)
                      ..++....---.+.||.|++.+.+.+. .+...|..+|..++..++++..+++.|+++.|.+.+.++    +...+.+..
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~----~~~~E~Al~  161 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ----SFQMEIALN  161 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC----cchHHHHHH
Confidence            977654322235679999999988866 899999999999999999999999999999999998773    236789999


Q ss_pred             HHHHHhcC
Q 003008          297 ALIELAKD  304 (858)
Q Consensus       297 aL~nl~~~  304 (858)
                      +|.+++..
T Consensus       162 lL~~Lls~  169 (543)
T PF05536_consen  162 LLLNLLSR  169 (543)
T ss_pred             HHHHHHHh
Confidence            99998864

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.35  E-value=0.39  Score=53.32  Aligned_cols=353  Identities=14%  Similarity=0.075  Sum_probs=190.5

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHH----ccCCH-HHHHHHHHHHHHhhcCchhHHH
Q 003008          108 VQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLL----RSESS-AACEAAAGLLRSISSINVYRDL  182 (858)
Q Consensus       108 v~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL----~~~~~-~~~~~a~~aL~nLs~~~~~~~~  182 (858)
                      ..-|+ +++|..-..|...+..++..+-.        .|..|.|...+    -.+.+ ..+..++.++++.+...+....
T Consensus       100 l~aL~-s~epr~~~~Aaql~aaIA~~Elp--------~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~l  170 (858)
T COG5215         100 LRALK-SPEPRFCTMAAQLLAAIARMELP--------NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDL  170 (858)
T ss_pred             HHHhc-CCccHHHHHHHHHHHHHHHhhCc--------cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHH
Confidence            34565 67776666677777766643221        34444444444    34433 4677789999999887655555


Q ss_pred             HHhcCcH-HHHHH-HhcCCCCCHHHHHHHHHHHHHhc-c------CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHH
Q 003008          183 VAECGAI-EEITG-LLTRPSLTSEVKEQSMCTLWNLS-V------DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGV  253 (858)
Q Consensus       183 i~~~g~i-~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs-~------~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~  253 (858)
                      +...++| -.++. .++.++ +..++..++.+|.+-+ .      ++++|.-     .+...++..+.++.+++..+..|
T Consensus       171 i~~sN~il~aiv~ga~k~et-~~avRLaaL~aL~dsl~fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgC  244 (858)
T COG5215         171 IQMSNVILFAIVMGALKNET-TSAVRLAALKALMDSLMFVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGC  244 (858)
T ss_pred             HHHhhHHHHHHHHhhcccCc-hHHHHHHHHHHHHHHHHHHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHH
Confidence            5554433 33443 556654 7788889999999833 2      1222222     24455666778899999999999


Q ss_pred             HHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCc
Q 003008          254 LANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRP  332 (858)
Q Consensus       254 L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~  332 (858)
                      |..+-.- ...-....+.-........+++.++.   +.-.+...-.-+|.. ++-..+...-.-..|+-+         
T Consensus       245 l~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~---va~qavEfWsticeE-eid~~~e~~~~pe~p~qn---------  311 (858)
T COG5215         245 LNKIMMLYYKFMQSYMENALAALTGRFMKSQNDE---VAIQAVEFWSTICEE-EIDGEMEDKYLPEVPAQN---------  311 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchH---HHHHHHHHHHHHHHH-HhhhHHHHhhcccCchhh---------
Confidence            9777432 11111222222222333345544322   333444332233322 111111111000000000         


Q ss_pred             cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcc
Q 003008          333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPID  412 (858)
Q Consensus       333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~  412 (858)
                                                                              +.++|.                  
T Consensus       312 --------------------------------------------------------~~fa~a------------------  317 (858)
T COG5215         312 --------------------------------------------------------HGFARA------------------  317 (858)
T ss_pred             --------------------------------------------------------cchHHH------------------
Confidence                                                                    001111                  


Q ss_pred             cccccccccccHHHHHHHhCC-------CCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHH
Q 003008          413 RQLTLLPWIDGVARLVLILGL-------EDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH  485 (858)
Q Consensus       413 ~~~~~l~~~~~i~~Lv~lL~~-------~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~  485 (858)
                            ...+++|.|+.||..       ++..+-..|..+|.-.+...  ...+.+. .....-+=+++++..-|+.+++
T Consensus       318 ------av~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--gd~i~~p-Vl~FvEqni~~~~w~nreaavm  388 (858)
T COG5215         318 ------AVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--GDKIMRP-VLGFVEQNIRSESWANREAAVM  388 (858)
T ss_pred             ------HHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--hhHhHHH-HHHHHHHhccCchhhhHHHHHH
Confidence                  112356667777654       23345566666665533210  0111111 3333444567888899999999


Q ss_pred             HHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc---
Q 003008          486 ALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE---  560 (858)
Q Consensus       486 aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~---  560 (858)
                      |++.+-.  +...+..++. .++|.+..++.++.  -.++..++||+..++..   .  ...|-+.+-++..++...   
T Consensus       389 AfGSvm~gp~~~~lT~~V~-qalp~i~n~m~D~~--l~vk~ttAwc~g~iad~---v--a~~i~p~~Hl~~~vsa~liGl  460 (858)
T COG5215         389 AFGSVMHGPCEDCLTKIVP-QALPGIENEMSDSC--LWVKSTTAWCFGAIADH---V--AMIISPCGHLVLEVSASLIGL  460 (858)
T ss_pred             HhhhhhcCccHHHHHhhHH-hhhHHHHHhcccce--eehhhHHHHHHHHHHHH---H--HHhcCccccccHHHHHHHhhh
Confidence            9999876  3444555543 57888888887555  78899999999998861   1  112334444554443322   


Q ss_pred             CCChhHHHHHH-HHHHhhcc
Q 003008          561 SLDPSIELTGN-VIEAAVSE  579 (858)
Q Consensus       561 s~d~~v~~~a~-~l~~L~~~  579 (858)
                      .++|-+..+++ ...|++.+
T Consensus       461 ~D~p~~~~ncsw~~~nlv~h  480 (858)
T COG5215         461 MDCPFRSINCSWRKENLVDH  480 (858)
T ss_pred             hccchHHhhhHHHHHhHHHh
Confidence            24577777777 88888754

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.045  Score=62.96  Aligned_cols=284  Identities=12%  Similarity=0.105  Sum_probs=166.8

Q ss_pred             ccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHH
Q 003008          156 RSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLL  235 (858)
Q Consensus       156 ~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L  235 (858)
                      ++++.-+.-.|+.+|++++..+-.|+      ..|.+.+++++.  ++.+++.|+.++..+-.......    +..++..
T Consensus       117 ~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~--~~~irKKA~Lca~r~irK~P~l~----e~f~~~~  184 (866)
T KOG1062|consen  117 NSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHR--DPYIRKKAALCAVRFIRKVPDLV----EHFVIAF  184 (866)
T ss_pred             cCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCC--CHHHHHHHHHHHHHHHHcCchHH----HHhhHHH
Confidence            44455666678888888876554443      457888899998  99999998888777653322211    2245666


Q ss_pred             HHHHccCCHHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHccCC------------CCCHHHHHHHHHHHHHHh
Q 003008          236 IKSLEDENMKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLKANV------------EGSKVIRKEARNALIELA  302 (858)
Q Consensus       236 v~ll~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~------------~~~~~~~~~a~~aL~nl~  302 (858)
                      .++|.+.+..+....+..+..++... +.-..+.+  .++.||..|++-.            -..|-+|-..++.|.-|.
T Consensus       185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG  262 (866)
T KOG1062|consen  185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG  262 (866)
T ss_pred             HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence            77787777788888888888887653 32223333  6677777665311            013557777788887777


Q ss_pred             cC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhh
Q 003008          303 KD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNA  381 (858)
Q Consensus       303 ~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~  381 (858)
                      .+ ++..+.|.+-      |-+.+             ...+.+   ++.---+.++|+.++.-+-.+..   +..     
T Consensus       263 q~d~daSd~M~Di------Laqva-------------tntdss---kN~GnAILYE~V~TI~~I~~~~~---Lrv-----  312 (866)
T KOG1062|consen  263 QNDADASDLMNDI------LAQVA-------------TNTDSS---KNAGNAILYECVRTIMDIRSNSG---LRV-----  312 (866)
T ss_pred             CCCccHHHHHHHH------HHHHH-------------hccccc---ccchhHHHHHHHHHHHhccCCch---HHH-----
Confidence            74 3333333221      22221             000000   11111344555555554421110   100     


Q ss_pred             hhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHH
Q 003008          382 MVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKE  461 (858)
Q Consensus       382 li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~  461 (858)
                                                              -++.-|-.+|.++|..++..|...|...-..++....   
T Consensus       313 ----------------------------------------lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq---  349 (866)
T KOG1062|consen  313 ----------------------------------------LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ---  349 (866)
T ss_pred             ----------------------------------------HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH---
Confidence                                                    1344455677777777787788887774332221110   


Q ss_pred             cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          462 AGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                       .=-..++.+|++++..+|+.|...+..|......+..      +..|+..|...  +++.+...+.-+..++.
T Consensus       350 -rHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~m------v~eLl~fL~~~--d~~~k~~~as~I~~laE  414 (866)
T KOG1062|consen  350 -RHRSTILECLKDPDVSIKRRALELSYALVNESNVRVM------VKELLEFLESS--DEDFKADIASKIAELAE  414 (866)
T ss_pred             -HHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHH------HHHHHHHHHhc--cHHHHHHHHHHHHHHHH
Confidence             0123467889999999999999998888864443332      45577777744  47778777777766665

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.34  Score=55.90  Aligned_cols=63  Identities=17%  Similarity=0.165  Sum_probs=42.2

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhh
Q 003008          749 PRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLS  817 (858)
Q Consensus       749 ~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~  817 (858)
                      ..+.+..-=.+.-+|.+|..||+++......      ......-.|.+.+.+.++++|..|..+|.++.
T Consensus       469 r~iyNRviLEn~ivRaaAv~alaKfg~~~~~------l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  469 RFIYNRVILENAIVRAAAVSALAKFGAQDVV------LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC------ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            3333444446677899999999988743322      11112234567888999999999999998886

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.29  E-value=0.11  Score=59.15  Aligned_cols=184  Identities=14%  Similarity=0.141  Sum_probs=124.3

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hh
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN-VY  179 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~  179 (858)
                      ...-+-++.||+ ++.|-+|..|+..|..+...-..    .+  ..+.|.|..-|.++|+.++-.|+..++.|+.-+ .+
T Consensus       143 RDLa~Dv~tLL~-sskpYvRKkAIl~lykvFLkYPe----Al--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn  215 (877)
T KOG1059|consen  143 RDLADDVFTLLN-SSKPYVRKKAILLLYKVFLKYPE----AL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN  215 (877)
T ss_pred             HHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHhhhH----hH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence            344456888997 78889999999999887653322    23  478899999999999999999999999998844 33


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCC-HHHHHHHHHHHH--
Q 003008          180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDEN-MKVKEAAGGVLA--  255 (858)
Q Consensus       180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~a~~~L~--  255 (858)
                      --.     .-|.+.++|-+.+ |-.+.........+|+-- |....     ..+++|..++.+.. ..+...|..++.  
T Consensus       216 yL~-----LAP~ffkllttSs-NNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~  284 (877)
T KOG1059|consen  216 YLQ-----LAPLFYKLLVTSS-NNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAV  284 (877)
T ss_pred             ccc-----ccHHHHHHHhccC-CCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence            322     3588888887754 667777788888888743 33332     34789999998763 345555555554  


Q ss_pred             HHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-Chh
Q 003008          256 NLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDY  306 (858)
Q Consensus       256 nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~  306 (858)
                      +++.+-....+-++ -+++.|-.++...   .+.++..++.++..+.. |+.
T Consensus       285 s~s~g~~d~~asiq-LCvqKLr~fieds---DqNLKYlgLlam~KI~ktHp~  332 (877)
T KOG1059|consen  285 SMSSGMSDHSASIQ-LCVQKLRIFIEDS---DQNLKYLGLLAMSKILKTHPK  332 (877)
T ss_pred             hhccCCCCcHHHHH-HHHHHHhhhhhcC---CccHHHHHHHHHHHHhhhCHH
Confidence            33333222222222 2456666666543   34588888888888887 554

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.073  Score=57.15  Aligned_cols=267  Identities=15%  Similarity=0.184  Sum_probs=180.6

Q ss_pred             HHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc------ch----HHHHHhCCCHHHH
Q 003008          166 AAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK------KH----RLKIANTDILPLL  235 (858)
Q Consensus       166 a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~------~~----~~~i~~~g~i~~L  235 (858)
                      ...-++-+|.-++-=..+++..+++.|++||.+.  |..+....+..|..|...+      +.    -..+++.+.++.|
T Consensus       104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHe--NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHE--NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCC--CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            4445677787777777889999999999999998  9999999999999998421      11    3456688899999


Q ss_pred             HHHHccCCHHHH------HHHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-hh
Q 003008          236 IKSLEDENMKVK------EAAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD-YY  307 (858)
Q Consensus       236 v~ll~~~~~~~~------~~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-~~  307 (858)
                      ++-+..-++.+.      ..++..+-|+... ++....+++.|.+.+|+.-+..... ....+..|..+|.-+-.+. ++
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~-f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAA-FDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccC-cchhHHHHHHHHHHHhccCchh
Confidence            988876554444      4566677777654 5566677888999999985543322 2225678888888887753 46


Q ss_pred             HHHHHHcCCccccccccc-ccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhh
Q 003008          308 RILIIEEGLVPVPMVGAD-AYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRS  386 (858)
Q Consensus       308 ~~~i~~~g~v~~~Lv~ll-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~  386 (858)
                      +..+....|+.. |++-+ .|+..                                     ++                 
T Consensus       261 ~~~~~~l~GiD~-lL~~la~yk~~-------------------------------------dP-----------------  285 (536)
T KOG2734|consen  261 RKLLGPLDGIDV-LLRQLAVYKRH-------------------------------------DP-----------------  285 (536)
T ss_pred             hhhhcCcccHHH-HHhhcchhhcc-------------------------------------CC-----------------
Confidence            666666666663 33311 00000                                     00                 


Q ss_pred             hhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHH
Q 003008          387 RQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIK  466 (858)
Q Consensus       387 ~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~  466 (858)
                                               .                   +.+..+.-++-..+|+.+-..++++..+....+++
T Consensus       286 -------------------------~-------------------~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq  321 (536)
T KOG2734|consen  286 -------------------------A-------------------TVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ  321 (536)
T ss_pred             -------------------------C-------------------CcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH
Confidence                                     0                   00122334455566666666788899999888888


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHhhcC---hhHHHHHHHcCChHHHHHhhcC-C-------CccHHHHHHHHHHHHHhcC
Q 003008          467 YLVKLLDHSSDAVRLATTHALERLSVS---RGVCQIMEAEGVVHPLVNTLKN-L-------DISESLMEKTLDILGRILD  535 (858)
Q Consensus       467 ~Lv~LL~~~~~~v~~~a~~aL~~Ls~~---~~~~~~l~~~g~i~~Li~lL~~-~-------~~~~~~~~~a~~~L~~l~~  535 (858)
                      ...-+++. ....|..+..+|-....+   .+++..+++.+|+..+..+... |       ....+.-++.+..|+.+..
T Consensus       322 Lm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  322 LMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            66666655 566677888888887763   3678889999999988876541 1       1235566677888877766

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.20  E-value=0.00083  Score=47.88  Aligned_cols=40  Identities=28%  Similarity=0.379  Sum_probs=36.7

Q ss_pred             hhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008          453 EHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV  492 (858)
Q Consensus       453 ~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~  492 (858)
                      ++++..+++.|+++.|+.++.++++++++.++++|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4578889999999999999999999999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF05536 Neurochondrin: Neurochondrin

Probab=97.19  E-value=0.013  Score=67.80  Aligned_cols=155  Identities=14%  Similarity=0.097  Sum_probs=120.1

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCccc---HHHHHHhcCcHHHHHHHHccC-------CHHHHHHHHHHHH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKC---IDYIMQFSGCINLTVNLLRSE-------SSAACEAAAGLLR  171 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~---~~~ii~~~g~i~~Li~lL~~~-------~~~~~~~a~~aL~  171 (858)
                      -.+.+.+.+|+ +.+..-|.-++..+.++...++..   ++.+. +.=+.+-+-++|+++       ....+..|+..|.
T Consensus         5 ~~l~~c~~lL~-~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~-~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    5 ASLEKCLSLLK-SADDTERFAGLLLVTKLLDADDEDSQTRRRVF-EAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             HHHHHHHHHhc-cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHH-HhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            45778899998 666466777777778887755521   12344 566678888888873       3566777999999


Q ss_pred             HhhcCchh--HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHH
Q 003008          172 SISSINVY--RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEA  249 (858)
Q Consensus       172 nLs~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~  249 (858)
                      .++..++.  -..++.  -||.|++++...+ +..+...|..+|..++.+++++..+.+.|+++.|++.+.+ .+...+.
T Consensus        83 ~f~~~~~~a~~~~~~~--~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~  158 (543)
T PF05536_consen   83 AFCRDPELASSPQMVS--RIPLLLEILSSSS-DLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEI  158 (543)
T ss_pred             HHcCChhhhcCHHHHH--HHHHHHHHHHcCC-chhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHH
Confidence            99987653  344554  4999999998873 3489999999999999999999999999999999999988 5577899


Q ss_pred             HHHHHHHHcCCcC
Q 003008          250 AGGVLANLALSKS  262 (858)
Q Consensus       250 a~~~L~nL~~~~~  262 (858)
                      ++.+|.++.....
T Consensus       159 Al~lL~~Lls~~~  171 (543)
T PF05536_consen  159 ALNLLLNLLSRLG  171 (543)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999876533

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.13  E-value=0.055  Score=55.62  Aligned_cols=255  Identities=16%  Similarity=0.148  Sum_probs=158.8

Q ss_pred             HHccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH-hCCC
Q 003008          154 LLRSESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA-NTDI  231 (858)
Q Consensus       154 lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~  231 (858)
                      +++.-++..|..|+.+|.++....+.|..+-. ...-..++++++..-++.+++.+.+-+++-|+.++...+.+- ....
T Consensus       157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl  236 (432)
T COG5231         157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL  236 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            33444677889999999999999888887654 446678889988765578999999999999999987764444 3456


Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHcCCc--CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC----
Q 003008          232 LPLLIKSLEDE-NMKVKEAAGGVLANLALSK--SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD----  304 (858)
Q Consensus       232 i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~----  304 (858)
                      +.-|+++++.. .+.+.+.++.++.|++.-.  ..-..+.-.|-+.+-|+.|....-..+.++...-..=..|-.+    
T Consensus       237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            77888888876 5678899999999998721  1112233345455555654332211222222211111111110    


Q ss_pred             ---hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhh
Q 003008          305 ---DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNA  381 (858)
Q Consensus       305 ---~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~  381 (858)
                         +.... =.+.|.+.     .            -+.+.+       .+          .|.-            -+  
T Consensus       317 ~~fD~Y~~-ELdsg~l~-----w------------Sp~H~~-------~d----------FWs~------------N~--  347 (432)
T COG5231         317 CIFDNYLN-ELDSGRLE-----W------------SPYHHK-------KD----------FWST------------NL--  347 (432)
T ss_pred             hHHHHHHH-HHhhCccc-----C------------CCcccc-------cC----------chhh------------hH--
Confidence               00000 01111100     0            000000       00          0000            00  


Q ss_pred             hhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccc--ccHHHHHHHhCCCCHH-HHHHHHHHHHH-hcCChhhHH
Q 003008          382 MVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWI--DGVARLVLILGLEDER-AIARAAESIAD-ISINEHMRM  457 (858)
Q Consensus       382 li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~--~~i~~Lv~lL~~~~~~-v~~~a~~aL~~-l~~~~~~~~  457 (858)
                                                        +.+...  ..++.|..++++..+. ....||.=++. .-..|+.+.
T Consensus       348 ----------------------------------d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~  393 (432)
T COG5231         348 ----------------------------------DMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA  393 (432)
T ss_pred             ----------------------------------HHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence                                              000101  1567788888877665 56677887887 557899999


Q ss_pred             HHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhh
Q 003008          458 LFKEAGAIKYLVKLLDHSSDAVRLATTHALERLS  491 (858)
Q Consensus       458 ~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls  491 (858)
                      .+...|+-+.+++|++|++++|+..|..|+..+-
T Consensus       394 vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         394 VLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            9999999999999999999999999999987764

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.024  Score=60.74  Aligned_cols=222  Identities=16%  Similarity=0.189  Sum_probs=155.9

Q ss_pred             ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC------Chh----hHHHHHHcCcHHHHHHhhcCCcHHHHH----
Q 003008          416 TLLPWIDGVARLVLILGLEDERAIARAAESIADISI------NEH----MRMLFKEAGAIKYLVKLLDHSSDAVRL----  481 (858)
Q Consensus       416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~------~~~----~~~~l~~~g~i~~Lv~LL~~~~~~v~~----  481 (858)
                      ..+..-++++.|+.||++++.+|-......|..+..      +.+    ...++++.+.++.|++-+..=+..+++    
T Consensus       119 p~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~g  198 (536)
T KOG2734|consen  119 PILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADG  198 (536)
T ss_pred             HHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhh
Confidence            344445699999999999999999999999998764      222    345677889999998877654444443    


Q ss_pred             --HHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHh
Q 003008          482 --ATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDA  558 (858)
Q Consensus       482 --~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~l  558 (858)
                        +....+-|+.. .++....+++.|.+..|+.-+.....-+.-+..+..+|+-+..++.+  ++....+-+|+..+++-
T Consensus       199 v~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e--~~~~~~~l~GiD~lL~~  276 (536)
T KOG2734|consen  199 VHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDE--NRKLLGPLDGIDVLLRQ  276 (536)
T ss_pred             hHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCch--hhhhhcCcccHHHHHhh
Confidence              44556677776 67888888888888887774443322244566788888888875533  55567888999999877


Q ss_pred             hc---CCCh------hHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008          559 AE---SLDP------SIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTI  628 (858)
Q Consensus       559 l~---s~d~------~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~  628 (858)
                      +.   ..||      +...|-. +||.+.....++ ..+....|++...-.++. ....+..++++|-....+++.....
T Consensus       277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C  354 (536)
T KOG2734|consen  277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNC  354 (536)
T ss_pred             cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHH
Confidence            63   2332      3344555 899998888998 888888887665545554 4445666788888888777644333


Q ss_pred             HhhchHHHHHHHH
Q 003008          629 ISADIESGLDAIF  641 (858)
Q Consensus       629 ~~~~~~~gl~~l~  641 (858)
                      .+-.+..|+.++|
T Consensus       355 ~kfVe~lGLrtiF  367 (536)
T KOG2734|consen  355 NKFVEILGLRTIF  367 (536)
T ss_pred             HHHHHHHhHHHHH
Confidence            3336778888888

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.08  E-value=0.0013  Score=46.90  Aligned_cols=40  Identities=25%  Similarity=0.387  Sum_probs=36.6

Q ss_pred             cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008          220 KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL  259 (858)
Q Consensus       220 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~  259 (858)
                      ++++..+++.|+++.|++++.+++++++..++++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4478889999999999999999999999999999999974

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.4  Score=54.59  Aligned_cols=168  Identities=15%  Similarity=0.110  Sum_probs=106.1

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSVSRGVCQIME  501 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~l~  501 (858)
                      ++..|-.+|.+.+..+|.-|...++.++.++.....+...  .+.++..|+ ..+..+|+.|+-.|..++. .++.+.| 
T Consensus       330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD-~~Nak~I-  405 (938)
T KOG1077|consen  330 AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD-VSNAKQI-  405 (938)
T ss_pred             HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-hhhHHHH-
Confidence            5667788889999999999999999987777766666655  788888888 6779999999999999985 3333333 


Q ss_pred             HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhcccc
Q 003008          502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETT  581 (858)
Q Consensus       502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~  581 (858)
                          +..+++.|..  .+..+|+....=.+-|+.   .+.......    +...++|+.               ++.   
T Consensus       406 ----V~elLqYL~t--Ad~sireeivlKvAILaE---KyAtDy~Wy----VdviLqLir---------------iag---  454 (938)
T KOG1077|consen  406 ----VAELLQYLET--ADYSIREEIVLKVAILAE---KYATDYSWY----VDVILQLIR---------------IAG---  454 (938)
T ss_pred             ----HHHHHHHHhh--cchHHHHHHHHHHHHHHH---HhcCCcchh----HHHHHHHHH---------------Hhc---
Confidence                3456666653  336777765554444544   222110000    111222221               111   


Q ss_pred             chhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHh
Q 003008          582 TSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIIS  630 (858)
Q Consensus       582 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~  630 (858)
                          ...+.+.+..++++.- .++++|.+|+..+....+.....+.|++
T Consensus       455 ----d~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~mVK  498 (938)
T KOG1077|consen  455 ----DYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHENMVK  498 (938)
T ss_pred             ----ccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence                1222344455555543 3567888888888877777777777743

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.00  E-value=0.0017  Score=49.88  Aligned_cols=55  Identities=24%  Similarity=0.193  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 003008          436 ERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERL  490 (858)
Q Consensus       436 ~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~L  490 (858)
                      +.+|..|+++|++++........-.....++.|+.+|.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999775444444446688999999999999999999999999875

...

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.90  E-value=0.086  Score=53.09  Aligned_cols=59  Identities=24%  Similarity=0.204  Sum_probs=49.0

Q ss_pred             cchHHHHHHhc--cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008          746 EAIPRLIEQIK--SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL  816 (858)
Q Consensus       746 ~~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL  816 (858)
                      -+||.|...|.  ..++-||..|+.||..++...            .++.|.+++.+..+-|++.|..+|-.+
T Consensus       218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~------------~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIADED------------CVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH------------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            36899998775  788999999999998876543            348889999999999999999998554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.90  E-value=0.017  Score=67.86  Aligned_cols=204  Identities=11%  Similarity=0.101  Sum_probs=156.9

Q ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcC-C--cHHHHHHHHHHHHHhhc-Chh
Q 003008          421 IDGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDH-S--SDAVRLATTHALERLSV-SRG  495 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~-~--~~~v~~~a~~aL~~Ls~-~~~  495 (858)
                      -|..|..++||+++-.+++.--+-+.+. ++-++..+..+++.++-.+.+..|.. .  +++-|..|+..|..+.. ..-
T Consensus       511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l  590 (1387)
T KOG1517|consen  511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL  590 (1387)
T ss_pred             cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence            4678889999999999998888777777 77778888889999998888888876 3  26889999999999998 455


Q ss_pred             HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc-cccccccCcCcHHHHHhhcCCChhHHHHHH-HH
Q 003008          496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK-SKFYDIPVNGSEKGLDAAESLDPSIELTGN-VI  573 (858)
Q Consensus       496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l  573 (858)
                      .++...+.+.+...+..|.++. ..-++...+.||+.|=.   ++. .++.-.+.++.+.|+.+|+++-|+|+..++ +|
T Consensus       591 GQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~---d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFAL  666 (1387)
T KOG1517|consen  591 GQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWE---DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFAL  666 (1387)
T ss_pred             hHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhh---hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHH
Confidence            5677778888888888888542 47789999999999977   443 455556678899999999999999999999 98


Q ss_pred             HHhhcc----ccchhhhH------------hhccch---hHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008          574 EAAVSE----TTTSYGKV------------LDSVFI---GRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTI  628 (858)
Q Consensus       574 ~~L~~~----~~~~~~~i------------~~~g~i---~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~  628 (858)
                      ..+...    .+.+...+            .+.-.+   -.++.+++++.+.++...+-+|.....+....-..
T Consensus       667 gtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~  740 (1387)
T KOG1517|consen  667 GTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKV  740 (1387)
T ss_pred             HHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHH
Confidence            887653    22221111            121112   36778889999999999888888887766554444

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.58  Score=53.56  Aligned_cols=179  Identities=13%  Similarity=0.117  Sum_probs=113.6

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhc-ChhHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSV-SRGVCQI  499 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~-~~~~~~~  499 (858)
                      ..|.|++-|.++|+.|+..|...++.++ .+|.+-     ...-|.+.++|. +.+--+-......+++|+. .|...+.
T Consensus       182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-----L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK  256 (877)
T KOG1059|consen  182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-----LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK  256 (877)
T ss_pred             hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc-----ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh
Confidence            6777888888888888888888888866 456543     334566677764 3445566666777777776 4544333


Q ss_pred             HHHcCChHHHHHhhcCCCccHHHHHHHHHHHH--HhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008          500 MEAEGVVHPLVNTLKNLDISESLMEKTLDILG--RILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA  576 (858)
Q Consensus       500 l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~--~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L  576 (858)
                           .+++|..++.+.. -..+...+..|+.  +++....+......+    .+..|--++.++|+..+.-++ +++-+
T Consensus       257 -----Lieplt~li~sT~-AmSLlYECvNTVVa~s~s~g~~d~~asiqL----CvqKLr~fiedsDqNLKYlgLlam~KI  326 (877)
T KOG1059|consen  257 -----LIEPITELMESTV-AMSLLYECVNTVVAVSMSSGMSDHSASIQL----CVQKLRIFIEDSDQNLKYLGLLAMSKI  326 (877)
T ss_pred             -----hhhHHHHHHHhhH-HHHHHHHHHHHheeehhccCCCCcHHHHHH----HHHHHhhhhhcCCccHHHHHHHHHHHH
Confidence                 5788888887332 2334444444432  333311111111111    245566678889999999998 88777


Q ss_pred             hccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008          577 VSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII  621 (858)
Q Consensus       577 ~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~  621 (858)
                      ...+..   .+..  .-..+++.|.+.++.|+.+|+..|+.+...
T Consensus       327 ~ktHp~---~Vqa--~kdlIlrcL~DkD~SIRlrALdLl~gmVsk  366 (877)
T KOG1059|consen  327 LKTHPK---AVQA--HKDLILRCLDDKDESIRLRALDLLYGMVSK  366 (877)
T ss_pred             hhhCHH---HHHH--hHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence            643331   2222  225688999999999999999999988653

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.85  E-value=1.5  Score=52.26  Aligned_cols=572  Identities=14%  Similarity=0.102  Sum_probs=280.6

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHH
Q 003008          103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDL  182 (858)
Q Consensus       103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~  182 (858)
                      .+..+.+-+. ..|...+.+..+-+.+++........    ..-.+|.+-+.+ .+..++...++.-++++......+..
T Consensus        83 ~ia~l~~e~~-~~di~~r~~~~~~l~~~a~~~~~~~t----r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~  156 (759)
T KOG0211|consen   83 PIAVLIDELS-NTDIQLRLNSGRKLSNLALALGVERT----RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEY  156 (759)
T ss_pred             cHHHHhhccC-chhhhhhhhhhccccchhhhcccchh----hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhH
Confidence            3455666665 55656677788888777764333211    134556666666 66777887777777776554221111


Q ss_pred             HHhcCcH-HHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHhCCCHHHHHHHHccCCH-HHHHHHHHHHHHHcC
Q 003008          183 VAECGAI-EEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENM-KVKEAAGGVLANLAL  259 (858)
Q Consensus       183 i~~~g~i-~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~nL~~  259 (858)
                         .+.+ +++-.+....  ...+++.++..|...+. .++....   . .+-+++..+..++. ..+..+++....+..
T Consensus       157 ---~~~ll~~le~l~~~e--et~vr~k~ve~l~~v~~~~~~~~~~---~-~lv~l~~~l~~~d~~~sr~sacglf~~~~~  227 (759)
T KOG0211|consen  157 ---AHMLLPPLELLATVE--ETGVREKAVESLLKVAVGLPKEKLR---E-HLVPLLKRLATGDWFQSRLSACGLFGKLYV  227 (759)
T ss_pred             ---HHHhhHHHHhhhHHH--HHHHHHHHHHHHHHHHHhcChHHHH---H-HHHHHHHHccchhhhhcchhhhhhhHHhcc
Confidence               1122 2332233222  34567778877777653 3322110   1 12233333333311 123344444444433


Q ss_pred             CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCC
Q 003008          260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPS  339 (858)
Q Consensus       260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~  339 (858)
                      .-..  ..++.. +.+++.-+-  .+..+.++..++.-+.+++.--..  ..+..+.++. ++++.              
T Consensus       228 ~~~~--~~vk~e-lr~~~~~lc--~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~-~~~L~--------------  285 (759)
T KOG0211|consen  228 SLPD--DAVKRE-LRPIVQSLC--QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPT-LIQLL--------------  285 (759)
T ss_pred             CCCh--HHHHHH-HHHHHHhhc--cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHH-Hhhhh--------------
Confidence            2221  111111 223333332  223556777777777777653221  5555566663 55542              


Q ss_pred             CCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccc
Q 003008          340 LPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLP  419 (858)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~  419 (858)
                              +.....                    +.+++++.++.      +.....             .+.+     .
T Consensus       286 --------~Ddqds--------------------Vr~~a~~~~~~------l~~l~~-------------~~~d-----~  313 (759)
T KOG0211|consen  286 --------RDDQDS--------------------VREAAVESLVS------LLDLLD-------------DDDD-----V  313 (759)
T ss_pred             --------hcchhh--------------------HHHHHHHHHHH------HHHhcC-------------Cchh-----h
Confidence                    000001                    22222222222      111100             0000     0


Q ss_pred             ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHH
Q 003008          420 WIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVC  497 (858)
Q Consensus       420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~  497 (858)
                      .....+.++...++++..++.......+.++..=..  ....-..+++...++++...+++.+.+.-...++.  +.+.+
T Consensus       314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~  391 (759)
T KOG0211|consen  314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY  391 (759)
T ss_pred             hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence            122667788888888888887777666664421000  11123457788888888888888888777777665  44455


Q ss_pred             HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008          498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA  576 (858)
Q Consensus       498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L  576 (858)
                      ..+.....+|.+..++.++.  ..++...+.-+..+....   . +. -.-..-.+.++..+++.+++|+.+.. .+..+
T Consensus       392 ~~i~~~~ilp~~~~lv~d~~--~~vr~a~a~~~~~~~p~~---~-k~-~ti~~llp~~~~~l~de~~~V~lnli~~ls~~  464 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLVLDNA--LHVRSALASVITGLSPIL---P-KE-RTISELLPLLIGNLKDEDPIVRLNLIDKLSLL  464 (759)
T ss_pred             cccchhhhhHHHHHHHhccc--chHHHHHhccccccCccC---C-cC-cCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence            55666666788888887554  666665555444443311   1 10 01123467788889999999999887 55444


Q ss_pred             hccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCC
Q 003008          577 VSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGR  656 (858)
Q Consensus       577 ~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~  656 (858)
                      -......--.......+|.+..+-......++....+.+-.++..-.  ..+..   . -+..+.. ..+.+..+     
T Consensus       465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~---~-~~~~l~~-~~l~d~v~-----  532 (759)
T KOG0211|consen  465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFD---E-KLAELLR-TWLPDHVY-----  532 (759)
T ss_pred             HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhh---H-HHHHHHH-hhhhhhHH-----
Confidence            32211110222333456666666666656666666666666654332  11100   0 0111110 00011000     


Q ss_pred             CCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCC--CchhhHHHHHHHhhcccCCCCCCC
Q 003008          657 QPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVP--LHYKDWVAACLVKLSCLSGPDQDF  734 (858)
Q Consensus       657 ~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~  734 (858)
                                  .. .-+....+..+...-. .   .... .....+++.....  .-.+.....++..+.         
T Consensus       533 ------------~I-r~~aa~~l~~l~~~~G-~---~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la---------  585 (759)
T KOG0211|consen  533 ------------SI-REAAARNLPALVETFG-S---EWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELA---------  585 (759)
T ss_pred             ------------HH-HHHHHHHhHHHHHHhC-c---chhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHH---------
Confidence                        00 0011111111111000 0   0000 0001111111000  111222233333222         


Q ss_pred             CccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHH
Q 003008          735 ENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILY  814 (858)
Q Consensus       735 ~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~  814 (858)
                       +..+..++....+|++.++..+..++||..++.-|..+...=.    ....+.-..|.+..+.++++.++|..|..++.
T Consensus       586 -~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~----~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~  660 (759)
T KOG0211|consen  586 -EVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD----ESVRDEEVLPLLETLSSDQELDVRYRAILAFG  660 (759)
T ss_pred             -HHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc----hHHHHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence             3344445566678899999999999999999999987653211    14444445566667778888889988877765


Q ss_pred             hh
Q 003008          815 NL  816 (858)
Q Consensus       815 nL  816 (858)
                      -+
T Consensus       661 ~i  662 (759)
T KOG0211|consen  661 SI  662 (759)
T ss_pred             HH
Confidence            54

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.091  Score=60.52  Aligned_cols=400  Identities=18%  Similarity=0.124  Sum_probs=213.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh-HHHH
Q 003008          105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY-RDLV  183 (858)
Q Consensus       105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~-~~~i  183 (858)
                      ..+.+.++ +.++.+|..++....++-..+..    ...+.|.++.|-.++.++++.+..+|+.+|..|...+.+ -...
T Consensus       124 ~Pl~~~l~-d~~~yvRktaa~~vakl~~~~~~----~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~  198 (734)
T KOG1061|consen  124 DPLLKCLK-DDDPYVRKTAAVCVAKLFDIDPD----LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE  198 (734)
T ss_pred             HHHHHhcc-CCChhHHHHHHHHHHHhhcCChh----hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence            34556676 78889999888777777654432    344799999999999999999999999999999765432 1111


Q ss_pred             HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCc
Q 003008          184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN  263 (858)
Q Consensus       184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~  263 (858)
                      ...-.+..++..+...  +...+...+.+|.+-.-.+. +...   ..+..+...|.+.+..+.-.+...+.++...-..
T Consensus       199 l~~~~~~~lL~al~ec--~EW~qi~IL~~l~~y~p~d~-~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~  272 (734)
T KOG1061|consen  199 LNPQLINKLLEALNEC--TEWGQIFILDCLAEYVPKDS-REAE---DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ  272 (734)
T ss_pred             ccHHHHHHHHHHHHHh--hhhhHHHHHHHHHhcCCCCc-hhHH---HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence            1111234444444443  44444444444444332222 1111   2244556667777777777777777777654333


Q ss_pred             hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCc
Q 003008          264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDG  343 (858)
Q Consensus       264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~  343 (858)
                      .........-++|+.++...+    ..+..   +|.|+..--..+..+.....-. ++++   |.++.            
T Consensus       273 ~~~~~~~K~~~pl~tlls~~~----e~qyv---aLrNi~lil~~~p~~~~~~~~~-Ff~k---ynDPi------------  329 (734)
T KOG1061|consen  273 VNELLFKKVAPPLVTLLSSES----EIQYV---ALRNINLILQKRPEILKVEIKV-FFCK---YNDPI------------  329 (734)
T ss_pred             HHHHHHHHhcccceeeecccc----hhhHH---HHhhHHHHHHhChHHHHhHhHe-eeee---cCCch------------
Confidence            333334466788888886653    13323   3444432111111122222222 2333   11110            


Q ss_pred             chhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccccc
Q 003008          344 TEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDG  423 (858)
Q Consensus       344 ~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  423 (858)
                               .++..-...+..++.+..        +        +|                                 .
T Consensus       330 ---------YvK~eKleil~~la~~~n--------l--------~q---------------------------------v  351 (734)
T KOG1061|consen  330 ---------YVKLEKLEILIELANDAN--------L--------AQ---------------------------------V  351 (734)
T ss_pred             ---------hhHHHHHHHHHHHhhHhH--------H--------HH---------------------------------H
Confidence                     111111222222221110        0        00                                 2


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHH
Q 003008          424 VARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEA  502 (858)
Q Consensus       424 i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~  502 (858)
                      +..|...-..-|.+...++.+++++++..-+..     .+.|..|+.++...-.-+.+.+...+..+.. .|..-+.++ 
T Consensus       352 l~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv-  425 (734)
T KOG1061|consen  352 LAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVV-  425 (734)
T ss_pred             HHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhh-
Confidence            223333444457778889999999976432222     6789999999998777777778888888776 444323322 


Q ss_pred             cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhh-ccc
Q 003008          503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAV-SET  580 (858)
Q Consensus       503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~-~~~  580 (858)
                          +.+-.-+. +-.+++.|..-.|+|+.-+.   ....-.     .-+..+++-..+...+|+..-+ +.-.+. ...
T Consensus       426 ----~~l~~~~~-sl~epeak~amiWilg~y~~---~i~~a~-----elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p  492 (734)
T KOG1061|consen  426 ----AILCENLD-SLQEPEAKAALIWILGEYAE---RIENAL-----ELLESFLENFKDETAEVQLELLTAAIKLFLKKP  492 (734)
T ss_pred             ----hhhccccc-ccCChHHHHHHHHHHhhhhh---ccCcHH-----HHHHHHHhhcccchHHHHHHHHHHHHHHHhcCC
Confidence                22222222 22346677777777777665   211110     1234445555556667776655 333322 111


Q ss_pred             cchhhhHhhccchhHHHHhh--cCCCHHHHHHHHHHHHHhhcC
Q 003008          581 TTSYGKVLDSVFIGRMIGIM--KTSYPDLQRKAASILEFITII  621 (858)
Q Consensus       581 ~~~~~~i~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~~l~~~  621 (858)
                      ... +.+     +..++...  .+.+++++..+..-=+.++.+
T Consensus       493 ~~t-q~~-----l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~  529 (734)
T KOG1061|consen  493 TET-QEL-----LQGVLPLATADTDNPDLRDRGLIYWRLLSED  529 (734)
T ss_pred             ccH-HHH-----HHHHHhhhhccccChhhhhhHHHHHHHhhcC
Confidence            121 222     22233332  356777877777666666533

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.78  E-value=0.0054  Score=53.03  Aligned_cols=66  Identities=21%  Similarity=0.213  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHh
Q 003008          163 CEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIAN  228 (858)
Q Consensus       163 ~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~  228 (858)
                      +...++.|.||+... .+++.+.+.|+||.++....-.+.+|-+++.|..++.||+. +++|+..|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            456788999998865 79999999999999999877666699999999999999994 5678877763

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.63  E-value=0.12  Score=58.53  Aligned_cols=138  Identities=14%  Similarity=0.073  Sum_probs=102.1

Q ss_pred             HHHHHHHhhcCchhHHHHHhcCcHHHHHHHh---------cCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHH
Q 003008          166 AAGLLRSISSINVYRDLVAECGAIEEITGLL---------TRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLL  235 (858)
Q Consensus       166 a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL---------~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L  235 (858)
                      |+.+|+-++.++.+.+.+....++..|.++-         ... .++.+...|+++|+|+-.+ +..|...++.|+.+.+
T Consensus         1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~-~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFES-PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccC-CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            3567788888877777777777778887765         222 3788999999999998755 5578888899999999


Q ss_pred             HHHHccC-----CHHHHHHHHHHHHHHcCC-cCchHHHHhC-CCHHHHHHHHccCC----C----------CCHHHHHHH
Q 003008          236 IKSLEDE-----NMKVKEAAGGVLANLALS-KSNHNILVEA-GVIPKLAMLLKANV----E----------GSKVIRKEA  294 (858)
Q Consensus       236 v~ll~~~-----~~~~~~~a~~~L~nL~~~-~~~~~~i~~~-g~i~~Lv~ll~~~~----~----------~~~~~~~~a  294 (858)
                      ++.|+..     +.++.....+.|.-++.. ...+..+++. +++..++..+...-    .          ........+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999887     778999999999999875 5667666654 67777777553211    0          012234567


Q ss_pred             HHHHHHHhcC
Q 003008          295 RNALIELAKD  304 (858)
Q Consensus       295 ~~aL~nl~~~  304 (858)
                      ++.+.|+..+
T Consensus       160 LKllFNit~~  169 (446)
T PF10165_consen  160 LKLLFNITLH  169 (446)
T ss_pred             HHHHHHhhhc
Confidence            8888998774

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.34  Score=55.17  Aligned_cols=103  Identities=14%  Similarity=0.150  Sum_probs=71.2

Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccc
Q 003008          465 IKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKF  544 (858)
Q Consensus       465 i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  544 (858)
                      +..+.+=|.+.++....-|..+++|+.+ .+.++.+.     +-+-.+|.+++..+.++..++.||..|...+++..   
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~-re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~---  183 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGS-REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---  183 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhcc-HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---
Confidence            3444455666778888888899999875 33344433     23346777778778899999999999988544332   


Q ss_pred             ccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhc
Q 003008          545 YDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVS  578 (858)
Q Consensus       545 ~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~  578 (858)
                        -..++...++.+|.+.+-.+...+. .+..++.
T Consensus       184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk  216 (938)
T KOG1077|consen  184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK  216 (938)
T ss_pred             --ChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence              2245677899999988877777666 5555553

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.57  E-value=0.0042  Score=47.64  Aligned_cols=55  Identities=22%  Similarity=0.218  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 003008          117 PLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSI  173 (858)
Q Consensus       117 ~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nL  173 (858)
                      |.+|..|+++|++++..........  ...+++.|+.+|+++++.+|..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~--~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPY--LPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHH--HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            5689999999999887766543333  378999999999999999999999999875

...

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=96.47  E-value=2.1  Score=47.89  Aligned_cols=378  Identities=12%  Similarity=0.033  Sum_probs=201.0

Q ss_pred             CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhc-Cch-hHHHHHh--cC
Q 003008          114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISS-INV-YRDLVAE--CG  187 (858)
Q Consensus       114 s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~-~~~-~~~~i~~--~g  187 (858)
                      ++|+.+|..+=.-|.+++.++-.   .++      ..+++.|-+.  +++.|..|.-+|.|=-. +++ -+....+  .|
T Consensus        16 spD~n~rl~aE~ql~~l~~~dF~---qf~------~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~   86 (858)
T COG5215          16 SPDPNARLRAEAQLLELQSGDFE---QFI------SLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLG   86 (858)
T ss_pred             CCCCCccccHHHHHHHhccccHH---HHH------HHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc
Confidence            57777888888888888875432   222      3556666443  66778877777777532 222 2222111  12


Q ss_pred             c-------HH-HHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHc
Q 003008          188 A-------IE-EITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLA  258 (858)
Q Consensus       188 ~-------i~-~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~  258 (858)
                      .       |. ..+..|.++  .|..-..|+.++..++..+-....  =.|.+..++.....+ ....+..++.++.+.+
T Consensus        87 ~~~E~k~qvK~~al~aL~s~--epr~~~~Aaql~aaIA~~Elp~~~--wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c  162 (858)
T COG5215          87 MRHESKEQVKGMALRALKSP--EPRFCTMAAQLLAAIARMELPNSL--WPGLMEEMVRNVGDEQPVSGKCESLGICGYHC  162 (858)
T ss_pred             CCHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHhhCcccc--chHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence            1       22 224466666  777777777777776643210000  023344455555444 3467889999999998


Q ss_pred             CCcCchHHHHhCCC-HHHHHH-HHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCC
Q 003008          259 LSKSNHNILVEAGV-IPKLAM-LLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHS  336 (858)
Q Consensus       259 ~~~~~~~~i~~~g~-i~~Lv~-ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~  336 (858)
                      ........+....+ +-.++. -++.++  +..+|..++.+|.+-+..  .+..+..++-.. .                
T Consensus       163 es~~Pe~li~~sN~il~aiv~ga~k~et--~~avRLaaL~aL~dsl~f--v~~nf~~E~erN-y----------------  221 (858)
T COG5215         163 ESEAPEDLIQMSNVILFAIVMGALKNET--TSAVRLAALKALMDSLMF--VQGNFCYEEERN-Y----------------  221 (858)
T ss_pred             hccCHHHHHHHhhHHHHHHHHhhcccCc--hHHHHHHHHHHHHHHHHH--HHHhhcchhhhc-h----------------
Confidence            77655443333333 233333 333332  444666666666552210  000000000000 0                


Q ss_pred             CCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccc
Q 003008          337 WPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLT  416 (858)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~  416 (858)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (858)
T COG5215         222 --------------------------------------------------------------------------------  221 (858)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-h
Q 003008          417 LLPWIDGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS-R  494 (858)
Q Consensus       417 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~  494 (858)
                            .+....+.-+.+|.+++..|.++|.. +.-+-+.-+...+.-.-..+.+.+++.+++|..+++.--..++.. -
T Consensus       222 ------~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEei  295 (858)
T COG5215         222 ------FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEI  295 (858)
T ss_pred             ------hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence                  11111222356677888888888888 333444444455555556667788888888888877654444431 1


Q ss_pred             hHHHHH-------------H---HcCChHHHHHhhcCCCc----cH-HHHHHHHHHHHHhcCCCcccccccccccCcCcH
Q 003008          495 GVCQIM-------------E---AEGVVHPLVNTLKNLDI----SE-SLMEKTLDILGRILDPSKEMKSKFYDIPVNGSE  553 (858)
Q Consensus       495 ~~~~~l-------------~---~~g~i~~Li~lL~~~~~----~~-~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~  553 (858)
                      +..-.+             .   -.+++|.|+.+|....+    |+ .+...|..||--++....+          ..+.
T Consensus       296 d~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----------~i~~  365 (858)
T COG5215         296 DGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----------KIMR  365 (858)
T ss_pred             hhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh----------HhHH
Confidence            110000             0   12378999999975222    12 2445677777666651111          1233


Q ss_pred             HHHHh----hcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008          554 KGLDA----AESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII  621 (858)
Q Consensus       554 ~Li~l----l~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~  621 (858)
                      +.+..    +.+++-.-+..+. ++..........+..-+-...+|.+.....++.--+...++|+++.++..
T Consensus       366 pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence            33333    3444433344455 66655544332212223345677787777766667888899999999753

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.32  E-value=0.057  Score=60.05  Aligned_cols=182  Identities=13%  Similarity=0.112  Sum_probs=119.4

Q ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-Chhh---HHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhH
Q 003008          421 IDGVARLVLILGLEDERAIARAAESIADISI-NEHM---RMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGV  496 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~---~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~  496 (858)
                      .+.+|.|..+|++.+.+++.+....++.++. .++.   |+-+.   .--.|+.+|.+.+.++|++|...++-++.-   
T Consensus       687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a---  760 (975)
T COG5181         687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA---  760 (975)
T ss_pred             hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh---
Confidence            4578899999999999999999999999764 3332   22121   233578889999999999999999998851   


Q ss_pred             HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008          497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEA  575 (858)
Q Consensus       497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~  575 (858)
                         +--+.++..|++-|+..+  -+.+...+.+++-.+.         .-.+...+|.+++--..++..|+...+ +++.
T Consensus       761 ---iGPqdvL~~LlnnLkvqe--Rq~RvctsvaI~iVae---------~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~f  826 (975)
T COG5181         761 ---IGPQDVLDILLNNLKVQE--RQQRVCTSVAISIVAE---------YCGPFSVLPTLMSDYETPEANVQNGVLKAMCF  826 (975)
T ss_pred             ---cCHHHHHHHHHhcchHHH--HHhhhhhhhhhhhhHh---------hcCchhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence               111223444444444111  2233333344444443         112344577777777777788887777 8888


Q ss_pred             hhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008          576 AVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP  623 (858)
Q Consensus       576 L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~  623 (858)
                      +.+.-... ..=.-.-..|.|-..|.+.++.-+..|..++..++.+..
T Consensus       827 mFeyig~~-s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         827 MFEYIGQA-SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             HHHHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence            87543222 111113456778888899999999999999999987743

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.32  E-value=0.066  Score=63.16  Aligned_cols=202  Identities=16%  Similarity=0.058  Sum_probs=146.4

Q ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC---CHHHHHHHHHHHHHhhc
Q 003008           99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE---SSAACEAAAGLLRSISS  175 (858)
Q Consensus        99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~---~~~~~~~a~~aL~nLs~  175 (858)
                      ..-|..|-+++||+ |+-.+.|---+.+=.++-.-+.+|...++ +.++-.-+++.|.++   +++.|.-|+..|..+..
T Consensus       509 LsVGIFPYVLKLLQ-S~a~ELrpiLVFIWAKILAvD~SCQ~dLv-Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~  586 (1387)
T KOG1517|consen  509 LSVGIFPYVLKLLQ-SSARELRPILVFIWAKILAVDPSCQADLV-KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR  586 (1387)
T ss_pred             hccchHHHHHHHhc-cchHhhhhhHHHHHHHHHhcCchhHHHHH-hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc
Confidence            35688999999998 77656665544444454444466655666 465555566666652   56888889999999987


Q ss_pred             Cc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHH
Q 003008          176 IN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGV  253 (858)
Q Consensus       176 ~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~  253 (858)
                      +- -.++...+.+.|..-++.|++++ .+-.+.-++-+|+.|= ..++.|..-++.++.+.|+.+|+++.++||..|..+
T Consensus       587 nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA  665 (1387)
T KOG1517|consen  587 NFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA  665 (1387)
T ss_pred             ccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence            64 58888899999998899999853 6778888888888884 566778888899999999999999999999999999


Q ss_pred             HHHHcCCc----CchHH------------H-HhCCCHH---HHHHHHccCCCCCHHHHHHHHHHHHHHhcChh
Q 003008          254 LANLALSK----SNHNI------------L-VEAGVIP---KLAMLLKANVEGSKVIRKEARNALIELAKDDY  306 (858)
Q Consensus       254 L~nL~~~~----~~~~~------------i-~~~g~i~---~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~  306 (858)
                      |..+-.+.    +.+..            + +|.-...   .++.+++.+   ++.++...+-+|.++.....
T Consensus       666 Lgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg---splvr~ev~v~ls~~~~g~~  735 (1387)
T KOG1517|consen  666 LGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG---SPLVRTEVVVALSHFVVGYV  735 (1387)
T ss_pred             HHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc---chHHHHHHHHHHHHHHHhhH
Confidence            99987642    11111            1 2222222   455555544   67788888889998887433

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.28  E-value=0.028  Score=57.73  Aligned_cols=180  Identities=14%  Similarity=0.142  Sum_probs=109.3

Q ss_pred             CCCCHHHHHHHHHHHHHhc-CC--hhhHHHHHH--cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHHHcC
Q 003008          432 GLEDERAIARAAESIADIS-IN--EHMRMLFKE--AGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIMEAEG  504 (858)
Q Consensus       432 ~~~~~~v~~~a~~aL~~l~-~~--~~~~~~l~~--~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~~~g  504 (858)
                      .+.+++.+..+..-|..+. .+  ......+.+  ...+..+...+.+....+...|+.++..|+..  ......  -..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--ADI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HHH
Confidence            6678899999999998843 33  233333332  25567777888777788999999999999872  222222  223


Q ss_pred             ChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcC-cHHHHHhhcCCChhHHHHHH-HHHHhhcccc-
Q 003008          505 VVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNG-SEKGLDAAESLDPSIELTGN-VIEAAVSETT-  581 (858)
Q Consensus       505 ~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~-i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~-  581 (858)
                      .+|.|+..+.++.  ..+++.+..+|..+....   ..     .... .+.+...+.+.++.++..++ .+..++.... 
T Consensus        95 ~l~~Ll~~~~~~~--~~i~~~a~~~L~~i~~~~---~~-----~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~  164 (228)
T PF12348_consen   95 LLPPLLKKLGDSK--KFIREAANNALDAIIESC---SY-----SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS  164 (228)
T ss_dssp             HHHHHHHGGG-----HHHHHHHHHHHHHHHTTS----H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHcccc--HHHHHHHHHHHHHHHHHC---Cc-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence            6788888888544  789999999999998721   10     1112 45566677888999999988 7777664433 


Q ss_pred             chhhhHhh----ccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008          582 TSYGKVLD----SVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS  624 (858)
Q Consensus       582 ~~~~~i~~----~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~  624 (858)
                      .. ..+..    ...++.+...+.+.+++++..|-.++..+...-+.
T Consensus       165 ~~-~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  165 DS-SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             hH-hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            11 22222    23567888889999999999999999888654333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.27  E-value=0.018  Score=49.91  Aligned_cols=69  Identities=22%  Similarity=0.210  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcC
Q 003008          246 VKEAAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEG  315 (858)
Q Consensus       246 ~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g  315 (858)
                      .+....++|+||++. +.++..+++.|++|.+++...- ++..|.+++.|..++.||+. +++|+..|.+..
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i-D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~   72 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI-DDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE   72 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC-CcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence            456788999999975 6888899999999999998765 44578899999999999999 789998887654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.26  E-value=0.33  Score=50.18  Aligned_cols=105  Identities=13%  Similarity=0.191  Sum_probs=76.9

Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcC-cHHHHHHhhcCC--cHHHHHHHHHHHHHhhcChhHHHHHHHc-CC
Q 003008          430 ILGLEDERAIARAAESIADISINEHMRMLFKEAG-AIKYLVKLLDHS--SDAVRLATTHALERLSVSRGVCQIMEAE-GV  505 (858)
Q Consensus       430 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g-~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~l~~~-g~  505 (858)
                      +++.-++-.+..|..++.++...++.|..++.++ .-..++.+++..  ..++|.+...++|-++.++.+.+.+-+. ..
T Consensus       157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl  236 (432)
T COG5231         157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL  236 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3334455578889999999999999999988655 445677777653  4789999999999999988887655543 45


Q ss_pred             hHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          506 VHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       506 i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                      +..|+++.+ ....+.+-+.++.++.|++.
T Consensus       237 i~dli~iVk-~~~keKV~Rlc~~Iv~n~~d  265 (432)
T COG5231         237 INDLIAIVK-ERAKEKVLRLCCGIVANVLD  265 (432)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            667777777 33345556667777777776

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.23  E-value=0.05  Score=55.81  Aligned_cols=181  Identities=18%  Similarity=0.171  Sum_probs=109.2

Q ss_pred             CCCHHHHHHHHHHHHHcccCC--cccHHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCcH
Q 003008          114 DYDPLDREQAVEALWKYSLGG--KKCIDYIMQF-SGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YRDLVAECGAI  189 (858)
Q Consensus       114 s~d~~~~~~a~~~L~~la~~~--~~~~~~ii~~-~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~~~~i~~~g~i  189 (858)
                      +.|++.|..++..|..+..+.  ......++.. ...+..++..+.+....+...|+.++..|+..-. .-.... ...+
T Consensus        18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~l   96 (228)
T PF12348_consen   18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DILL   96 (228)
T ss_dssp             -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHH
Confidence            679999999999999888766  1111222210 1344566666666666777788999988876432 122222 2368


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcC-chHHHH
Q 003008          190 EEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS-NHNILV  268 (858)
Q Consensus       190 ~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~-~~~~i~  268 (858)
                      |.|++.+.+.  +..++..|..+|..+..+-.....+    .++.+...+.+.++.++..++..|..+...-. ....+-
T Consensus        97 ~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   97 PPLLKKLGDS--KKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHccc--cHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            9999999987  8899999999999988655411111    14566667788899999999999999865433 222221


Q ss_pred             h----CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008          269 E----AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD  304 (858)
Q Consensus       269 ~----~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~  304 (858)
                      .    ...++.+...+...   .+.+|+.|..+++.+...
T Consensus       171 ~~~~~~~l~~~l~~~l~D~---~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDA---DPEVREAARECLWALYSH  207 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHH
Confidence            1    23566677777654   566999999999999774

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.23  Score=57.31  Aligned_cols=190  Identities=17%  Similarity=0.118  Sum_probs=117.2

Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHH
Q 003008          422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIM  500 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l  500 (858)
                      ....++...+++.++.++..++-.+.++-.  ...+.+.+.|.++.|-.++.+.++.|..+|+.+|..+.. +++.-...
T Consensus       121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~  198 (734)
T KOG1061|consen  121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE  198 (734)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence            367789999999999999999888888543  223456679999999999999999999999999999987 33211111


Q ss_pred             HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcc
Q 003008          501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSE  579 (858)
Q Consensus       501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~  579 (858)
                      ...-.+..++..+.  +..+.-+.....++.+-..       +...--...+..+...+.+.++.+...+. .+.++...
T Consensus       199 l~~~~~~~lL~al~--ec~EW~qi~IL~~l~~y~p-------~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~  269 (734)
T KOG1061|consen  199 LNPQLINKLLEALN--ECTEWGQIFILDCLAEYVP-------KDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKY  269 (734)
T ss_pred             ccHHHHHHHHHHHH--HhhhhhHHHHHHHHHhcCC-------CCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence            11111222233332  1112222222222222221       10000012344555667777788888888 77776654


Q ss_pred             ccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008          580 TTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS  624 (858)
Q Consensus       580 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~  624 (858)
                      .... ....-....++|+.++++.. ++|..+++=+..+....+.
T Consensus       270 ~~~~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~  312 (734)
T KOG1061|consen  270 LKQV-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE  312 (734)
T ss_pred             HHHH-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH
Confidence            4433 33333455688898888887 8888888777766654443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.16  E-value=0.014  Score=50.43  Aligned_cols=92  Identities=17%  Similarity=0.137  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcC
Q 003008          763 REAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQ  842 (858)
Q Consensus       763 ~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~  842 (858)
                      |..+..+|+..+..-.. . ..-.-...++|++..+.|++.+||..|..+|+|+++.-...-.-.=..++..|.++..++
T Consensus         3 R~ggli~Laa~ai~l~~-~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGK-D-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchH-h-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            44555566555433222 1 122223456999999999999999999999999986533221112357889999999999


Q ss_pred             ChhHHHHHHHHhcC
Q 003008          843 RPQWTRALRLLRNL  856 (858)
Q Consensus       843 ~~~~~~al~~l~~l  856 (858)
                      ++.++.+...|.++
T Consensus        81 d~~Vr~~a~~Ld~l   94 (97)
T PF12755_consen   81 DENVRSAAELLDRL   94 (97)
T ss_pred             chhHHHHHHHHHHH
Confidence            99998887877654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.25  Score=55.81  Aligned_cols=99  Identities=15%  Similarity=0.083  Sum_probs=72.9

Q ss_pred             hhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCcc
Q 003008          742 VTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSE  821 (858)
Q Consensus       742 i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~  821 (858)
                      +..+|+.-.+|.-|+++-.+||++|...++.|+..++. -.     ..++.-|+..++|..+.||..|..+|..++.+-.
T Consensus       369 iI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~  442 (823)
T KOG2259|consen  369 IIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-FA-----VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA  442 (823)
T ss_pred             cccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-cH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe
Confidence            44678888899999999999999999999999887665 22     2234678889999999999999999988877644


Q ss_pred             chHHHHHcCchHHHHHhhhcCChhHHHHHH
Q 003008          822 NHSAIIAAGAVPALRRIVLSQRPQWTRALR  851 (858)
Q Consensus       822 ~~~~i~~~g~v~~L~~ll~~~~~~~~~al~  851 (858)
                      .+..     -++.+++-+.+.++.+.+++.
T Consensus       443 i~ee-----ql~~il~~L~D~s~dvRe~l~  467 (823)
T KOG2259|consen  443 IREE-----QLRQILESLEDRSVDVREALR  467 (823)
T ss_pred             ecHH-----HHHHHHHHHHhcCHHHHHHHH
Confidence            4332     245666666666666644433

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.15  E-value=0.47  Score=56.34  Aligned_cols=414  Identities=15%  Similarity=0.068  Sum_probs=208.9

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCc
Q 003008          109 QMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGA  188 (858)
Q Consensus       109 ~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~  188 (858)
                      ++.+ +..+.+|..+..-+++++..-..   .+. ..+.++.++.+..++.+.+|+.|...+.++...-+...... .-.
T Consensus       244 ~lc~-d~~~~Vr~~~a~~l~~~a~~~~~---~~~-~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~-~~~  317 (759)
T KOG0211|consen  244 SLCQ-DDTPMVRRAVASNLGNIAKVLES---EIV-KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVV-KSL  317 (759)
T ss_pred             hhcc-ccchhhHHHHHhhhHHHHHHHHH---HHH-HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhh-hhh
Confidence            3443 55666777777777777654433   233 57888888888888888888888777777754211110111 124


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--cCchHH
Q 003008          189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS--KSNHNI  266 (858)
Q Consensus       189 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~  266 (858)
                      .+.+++....+  +..++.........|+..=+.  ....---+++...+++....+.+...+.-...++..  .++...
T Consensus       318 ~~~l~~~~~d~--~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~  393 (759)
T KOG0211|consen  318 TESLVQAVEDG--SWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPN  393 (759)
T ss_pred             hHHHHHHhcCh--hHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccc
Confidence            56777777766  666666666665555421111  111122345555556555555555555555554432  233444


Q ss_pred             HHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcch
Q 003008          267 LVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTE  345 (858)
Q Consensus       267 i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~  345 (858)
                      +...-.+|.+-.+....+   +.++...+....++.- .+       ....+. ++..+                     
T Consensus       394 i~~~~ilp~~~~lv~d~~---~~vr~a~a~~~~~~~p~~~-------k~~ti~-~llp~---------------------  441 (759)
T KOG0211|consen  394 IPDSSILPEVQVLVLDNA---LHVRSALASVITGLSPILP-------KERTIS-ELLPL---------------------  441 (759)
T ss_pred             cchhhhhHHHHHHHhccc---chHHHHHhccccccCccCC-------cCcCcc-ccChh---------------------
Confidence            444444555555443321   1122222221111110 00       000111 01100                     


Q ss_pred             hhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHH
Q 003008          346 IERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVA  425 (858)
Q Consensus       346 ~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~  425 (858)
                                     .+.++. +. ...+....+..         +...      +       ...+..--....+..++
T Consensus       442 ---------------~~~~l~-de-~~~V~lnli~~---------ls~~------~-------~v~~v~g~~~~s~slLp  482 (759)
T KOG0211|consen  442 ---------------LIGNLK-DE-DPIVRLNLIDK---------LSLL------E-------EVNDVIGISTVSNSLLP  482 (759)
T ss_pred             ---------------hhhhcc-hh-hHHHHHhhHHH---------HHHH------H-------hccCcccchhhhhhhhh
Confidence                           000110 00 00000000000         0000      0       00000001112233566


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHc
Q 003008          426 RLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAE  503 (858)
Q Consensus       426 ~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~  503 (858)
                      .++.+-....+.++.+..+.+..++....  ..+++...-+.+...+.+....+|+.|+..+..++.  ..++.    ..
T Consensus       483 ~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~----~~  556 (759)
T KOG0211|consen  483 AIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA----RL  556 (759)
T ss_pred             hhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh----HH
Confidence            67777666677888888888877554222  334444455556666767778999999988888875  21111    11


Q ss_pred             CChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccc
Q 003008          504 GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTT  582 (858)
Q Consensus       504 g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~  582 (858)
                      ..++.++....+++  -..|....-++..++.-     ....+....-++.+..+..++.++|+.+++ .+.....--. 
T Consensus       557 ~~i~k~L~~~~q~~--y~~R~t~l~si~~la~v-----~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~-  628 (759)
T KOG0211|consen  557 EEIPKLLAMDLQDN--YLVRMTTLFSIHELAEV-----LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD-  628 (759)
T ss_pred             HhhHHHHHHhcCcc--cchhhHHHHHHHHHHHH-----hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc-
Confidence            23565655555332  33444444444333320     001233345588899999999999999998 6655443222 


Q ss_pred             hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          583 SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       583 ~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                        ....+....|.+..+.++.+.+++..|..++..+.
T Consensus       629 --~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~  663 (759)
T KOG0211|consen  629 --ESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE  663 (759)
T ss_pred             --hHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence              23445556677777778888888888777776653

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.02  E-value=0.045  Score=61.52  Aligned_cols=181  Identities=14%  Similarity=0.153  Sum_probs=106.0

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-C--h----h
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-S--R----G  495 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~--~----~  495 (858)
                      .+..|..+.++.|..++..|+.+|..++..-...     .-.....+.+++++..+||..|+.+++-.+. .  +    .
T Consensus       199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            5555888999999999999999988866422221     2235677889999999999999766665553 1  1    1


Q ss_pred             HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccc----cc----------------ccccCcCcHHH
Q 003008          496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKS----KF----------------YDIPVNGSEKG  555 (858)
Q Consensus       496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~----------------~i~~~~~i~~L  555 (858)
                      ....+.+ .+...+-..+.+.+  -.++..|...|+.+-.-+.+.-.    |.                .....|+|..-
T Consensus       274 ~e~kl~D-~aF~~vC~~v~D~s--l~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG  350 (823)
T KOG2259|consen  274 EEEKLKD-AAFSSVCRAVRDRS--LSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG  350 (823)
T ss_pred             hhhhhHH-HHHHHHHHHHhcCc--eeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence            1111211 23445555666444  56777777777665542211100    00                00001111000


Q ss_pred             HHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008          556 LDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS  624 (858)
Q Consensus       556 i~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~  624 (858)
                      -+.    +.++-..        .+++.. ..++.+|+-..++.-|+++..+|++.|+..+..|+.+.+.
T Consensus       351 k~~----~advpse--------e~d~~~-~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~  406 (823)
T KOG2259|consen  351 KEW----NADVPSE--------EDDEEE-ESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG  406 (823)
T ss_pred             ccc----cccCchh--------hccccc-cccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC
Confidence            000    0000000        011122 4578888888999999999999999999999999886654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=95.91  E-value=0.29  Score=55.40  Aligned_cols=158  Identities=17%  Similarity=0.110  Sum_probs=106.2

Q ss_pred             cCCCcHHHHHHHh---------cCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-----CHHHHH
Q 003008           99 FGDSYVALFVQML---------GLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-----SSAACE  164 (858)
Q Consensus        99 ~~~g~i~~lv~lL---------~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-----~~~~~~  164 (858)
                      ....++..|..+-         ..+.++++...|+++|+|+-......+ .+..+.|..+.++..|+..     +.++..
T Consensus        19 ~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR-~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~F   97 (446)
T PF10165_consen   19 FTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSAR-QIFVDLGLAEKLCERLKNYSDSSQPSDVEF   97 (446)
T ss_pred             ccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHH-HHHHHcCcHHHHHHHHHcccccCCChhHHH
Confidence            3455566666644         225678999999999999999888754 4555899999999999877     678888


Q ss_pred             HHHHHHHHhhc-CchhHHHHHh-cCcHHHHHHHhcCC---------------CCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003008          165 AAAGLLRSISS-INVYRDLVAE-CGAIEEITGLLTRP---------------SLTSEVKEQSMCTLWNLSVDKKHRLKIA  227 (858)
Q Consensus       165 ~a~~aL~nLs~-~~~~~~~i~~-~g~i~~Lv~lL~~~---------------~~~~~~~~~a~~~L~nLs~~~~~~~~i~  227 (858)
                      ...+.|.-++. ..+.+..+.+ .+++..++..|...               +.+......+++++.|+..+......--
T Consensus        98 l~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~  177 (446)
T PF10165_consen   98 LDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEE  177 (446)
T ss_pred             HHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchh
Confidence            88898888865 4466766665 67887776644321               0134556678999999975433222112


Q ss_pred             hCCCHHHHHHHHccC---------CHHHHHHHHHHHHHH
Q 003008          228 NTDILPLLIKSLEDE---------NMKVKEAAGGVLANL  257 (858)
Q Consensus       228 ~~g~i~~Lv~ll~~~---------~~~~~~~a~~~L~nL  257 (858)
                      ....++.|+.++..-         .......+..+|.|+
T Consensus       178 ~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl  216 (446)
T PF10165_consen  178 FSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL  216 (446)
T ss_pred             hhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence            344555555554311         235677778888877

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.03  Score=61.31  Aligned_cols=136  Identities=13%  Similarity=0.087  Sum_probs=109.3

Q ss_pred             HHHHHHHHhhcCc---hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch-HHHHHhCCCHHHHHHHHc
Q 003008          165 AAAGLLRSISSIN---VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH-RLKIANTDILPLLIKSLE  240 (858)
Q Consensus       165 ~a~~aL~nLs~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~  240 (858)
                      .+++.+.-.+...   --|..+.+..+.++|+++|..+  +..+..-+...++|+-..-++ +..+.+.|.+..|+.++.
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P--eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~  483 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP--EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM  483 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc--cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence            3555555444443   3688888999999999999987  777778889999998765554 888889999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHcCCcCch--HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh
Q 003008          241 DENMKVKEAAGGVLANLALSKSNH--NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD  305 (858)
Q Consensus       241 ~~~~~~~~~a~~~L~nL~~~~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~  305 (858)
                      +.+..++....|.|+++-++.+.-  ..+...-++..++++.+.+.  . .+++.+..+|.|+..+.
T Consensus       484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc--~-~vq~q~lQilrNftc~~  547 (743)
T COG5369         484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC--F-KVQHQVLQILRNFTCDT  547 (743)
T ss_pred             cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc--c-ccHHHHHHHHHhccccc
Confidence            888899999999999999886544  35677778899999986542  2 38899999999998864

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.81  E-value=4.3  Score=45.51  Aligned_cols=68  Identities=22%  Similarity=0.166  Sum_probs=47.3

Q ss_pred             cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                      ..|.|-.+|++.-..|...++.++..++... .-..+.+ ..+..|-.+|+.+.  ...|-.|..+|..++.
T Consensus       265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~-~~vs~L~~fL~s~r--v~~rFsA~Riln~lam  332 (898)
T COG5240         265 LRPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVD-QTVSSLRTFLKSTR--VVLRFSAMRILNQLAM  332 (898)
T ss_pred             HHHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHH-HHHHHHHHHHhcch--HHHHHHHHHHHHHHHh
Confidence            5677788888888999999998888877511 0111111 24566666777444  7778889999999987

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=95.72  E-value=0.064  Score=58.84  Aligned_cols=166  Identities=13%  Similarity=0.110  Sum_probs=120.7

Q ss_pred             hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch
Q 003008          144 FSGCINLTVNLLRSESSAACEAAAGLLRSISS-INVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH  222 (858)
Q Consensus       144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~  222 (858)
                      +...+..|+++|..++..+.--+...++|+.. .+.-+..+.+.|.|..|+.++.+.  |...+....|.|+.+-.++++
T Consensus       429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK--DdaLqans~wvlrHlmyncq~  506 (743)
T COG5369         429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK--DDALQANSEWVLRHLMYNCQK  506 (743)
T ss_pred             ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc--hhhhhhcchhhhhhhhhcCcc
Confidence            45678999999999877777778888999865 456788899999999999999987  889999999999999866544


Q ss_pred             --HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc----CchHHHHhCC----CHHHHHHHHccCCCCCHHHHH
Q 003008          223 --RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK----SNHNILVEAG----VIPKLAMLLKANVEGSKVIRK  292 (858)
Q Consensus       223 --~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~----~~~~~i~~~g----~i~~Lv~ll~~~~~~~~~~~~  292 (858)
                        +-+....-++..++.+...+.-.++.++.-.|.|++.+.    ..+..+.+.-    ....|++.++..+   |...+
T Consensus       507 ~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~n---p~~i~  583 (743)
T COG5369         507 NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENN---PMEIL  583 (743)
T ss_pred             hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcC---chhhh
Confidence              666667778999999999999999999999999998742    2333333322    2345555555432   22333


Q ss_pred             HHHHHHHHHhc-ChhhHHHHHHc
Q 003008          293 EARNALIELAK-DDYYRILIIEE  314 (858)
Q Consensus       293 ~a~~aL~nl~~-~~~~~~~i~~~  314 (858)
                      ..+-.|.+++. ++.-+..+.+.
T Consensus       584 ~~~yilv~~aa~d~~l~~~V~~q  606 (743)
T COG5369         584 EGCYILVRNAACDDTLDYIVQSQ  606 (743)
T ss_pred             hhHHHHHHHHhccchHHHHHHhH
Confidence            44556666666 44444444443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=95.70  E-value=0.93  Score=51.33  Aligned_cols=188  Identities=15%  Similarity=0.038  Sum_probs=110.2

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHH-HHHHHHHhhcChhHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLA-TTHALERLSVSRGVCQIME  501 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~-a~~aL~~Ls~~~~~~~~l~  501 (858)
                      ..+-+.+++++.+-.-+..+++.++.+..+ .....+.+.+.+..|...+.+.+...++. +..+......+-.   ...
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g-~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~  210 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLVNG-LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPF  210 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHHcC-cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCC
Confidence            667788889988888899999998885542 22345566788888888888776554443 3333222222000   011


Q ss_pred             HcCChHHHHHhhcC-CCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcc
Q 003008          502 AEGVVHPLVNTLKN-LDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSE  579 (858)
Q Consensus       502 ~~g~i~~Li~lL~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~  579 (858)
                      +-+.++.+-.++.. ++....+|+.+..+...+...-.....+      ..++.++.-+....=..+..++ .+..+...
T Consensus       211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK------~llpsll~~l~~~kWrtK~aslellg~m~~~  284 (569)
T KOG1242|consen  211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK------LLLPSLLGSLLEAKWRTKMASLELLGAMADC  284 (569)
T ss_pred             CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            22334444444432 2334677777666655444300011111      1133333333322223344555 66666655


Q ss_pred             ccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008          580 TTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII  621 (858)
Q Consensus       580 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~  621 (858)
                      ...+ -.......+|.+.+.|-+..++++..+..+|.++..-
T Consensus       285 ap~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv  325 (569)
T KOG1242|consen  285 APKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV  325 (569)
T ss_pred             chHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            5555 5566678899999999999999999999999887653

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=95.66  E-value=1.9  Score=43.71  Aligned_cols=100  Identities=17%  Similarity=0.150  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCc
Q 003008          439 IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI  518 (858)
Q Consensus       439 ~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~  518 (858)
                      +..|.-.|.|+..          ..+|..|+.=+..++.-.|..++.+|+.|-+..          .||.|...|.+..+
T Consensus       173 Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E  232 (289)
T KOG0567|consen  173 RYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETE  232 (289)
T ss_pred             HHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhc
Confidence            3455555555544          345666777777777778888888887776422          47778877777777


Q ss_pred             cHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008          519 SESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN  571 (858)
Q Consensus       519 ~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~  571 (858)
                      .+.+|..|+.+|+.++.             ...++.|.+++.++++-++..+.
T Consensus       233 ~pMVRhEaAeALGaIa~-------------e~~~~vL~e~~~D~~~vv~esc~  272 (289)
T KOG0567|consen  233 HPMVRHEAAEALGAIAD-------------EDCVEVLKEYLGDEERVVRESCE  272 (289)
T ss_pred             chHHHHHHHHHHHhhcC-------------HHHHHHHHHHcCCcHHHHHHHHH
Confidence            77788888888888776             22466777777776666666555

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.52  E-value=0.15  Score=59.75  Aligned_cols=66  Identities=15%  Similarity=0.167  Sum_probs=47.6

Q ss_pred             chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008          747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL  816 (858)
Q Consensus       747 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL  816 (858)
                      .++++.+++.++++.||+.|+.|+.++..-.    .....+.|.+..+..++.+.++.|...|..+|..+
T Consensus       128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~ld----~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i  193 (757)
T COG5096         128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRLD----KDLYHELGLIDILKELVADSDPIVIANALASLAEI  193 (757)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhcC----HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence            5677777778888888888888887775332    23555667777777777788888877777777665

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.44  E-value=0.042  Score=48.92  Aligned_cols=70  Identities=23%  Similarity=0.368  Sum_probs=59.8

Q ss_pred             cHHHHHHHh-CCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008          423 GVARLVLIL-GLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV  492 (858)
Q Consensus       423 ~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~  492 (858)
                      .+..|+.+| .+.|+.+..-||.=|+.+. ..|+.|..+-+.|+-..++.|+.+++++||..|..|+..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            788999999 5668889999999999944 678888888899999999999999999999999999887753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=5.2  Score=50.10  Aligned_cols=109  Identities=19%  Similarity=0.074  Sum_probs=66.0

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA  502 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~  502 (858)
                      .+|.|..+=-+|+..||.....+...+-.++.....-.-.....-|+.-|.+....||+.++.||..|-..++.-+... 
T Consensus       999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e- 1077 (1702)
T KOG0915|consen  999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE- 1077 (1702)
T ss_pred             hhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH-
Confidence            5677777778899988876655544455443433333334456666666778889999999999999988544333222 


Q ss_pred             cCChHHHHHhh-cC-CCccHHHHHHHHHH---HHHhc
Q 003008          503 EGVVHPLVNTL-KN-LDISESLMEKTLDI---LGRIL  534 (858)
Q Consensus       503 ~g~i~~Li~lL-~~-~~~~~~~~~~a~~~---L~~l~  534 (858)
                        -+|.++..+ +. .+..+.+|+.+..+   |+.++
T Consensus      1078 --~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1078 --KLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              234444322 21 13346677765544   44444

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.20  E-value=0.26  Score=46.34  Aligned_cols=124  Identities=14%  Similarity=0.163  Sum_probs=92.1

Q ss_pred             HHHHHHcCChHHHHHhhcCCCc----cHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC--CChhHHHHH
Q 003008          497 CQIMEAEGVVHPLVNTLKNLDI----SESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES--LDPSIELTG  570 (858)
Q Consensus       497 ~~~l~~~g~i~~Li~lL~~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s--~d~~v~~~a  570 (858)
                      ...+.+.||+..|+.++.++..    .......+..++..|.+.|.   ..+...+..-+...+++.+.  .|+.+...+
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~---vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~s   80 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI---VSWDTLSDSFIKKIASYVNSSAMDASILQRS   80 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc---CchhhccHHHHHHHHHHHccccccchHHHHH
Confidence            3467788999999999987664    24566677888888887432   22333333445666666664  368888888


Q ss_pred             H-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008          571 N-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP  623 (858)
Q Consensus       571 ~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~  623 (858)
                      + .+.+++..+...+..+.+.-.++.|+..|+..++++|.++...+..|-...+
T Consensus        81 LaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   81 LAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            8 8888887776643777777789999999999999999999999998876543

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.06  E-value=0.13  Score=50.57  Aligned_cols=121  Identities=16%  Similarity=0.180  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHh----------------cCcHHHHHHHhcCCC----CCHHHHHHHHHHHHHhccCc
Q 003008          161 AACEAAAGLLRSISSINVYRDLVAE----------------CGAIEEITGLLTRPS----LTSEVKEQSMCTLWNLSVDK  220 (858)
Q Consensus       161 ~~~~~a~~aL~nLs~~~~~~~~i~~----------------~g~i~~Lv~lL~~~~----~~~~~~~~a~~~L~nLs~~~  220 (858)
                      .....++..|.||+..+.....+.+                ...+..|++++..+.    ....-..+.+.+|.|++..+
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~   89 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP   89 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence            3455678888888887765554433                225778888665521    13345678999999999999


Q ss_pred             chHHHHHh--CCC--HHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhC---CCHHHHHHHHc
Q 003008          221 KHRLKIAN--TDI--LPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEA---GVIPKLAMLLK  281 (858)
Q Consensus       221 ~~~~~i~~--~g~--i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~---g~i~~Lv~ll~  281 (858)
                      +.|..+..  .+.  +..|+..+.+.+.--|.-++.++.|+|...+....+...   +.+|.|+--|.
T Consensus        90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            99999983  344  667777778887777889999999999998888776553   34555555443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=94.89  E-value=0.56  Score=44.21  Aligned_cols=129  Identities=13%  Similarity=0.146  Sum_probs=96.0

Q ss_pred             HHHHhcCcHHHHHHHhcCCCC----CHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHHH
Q 003008          181 DLVAECGAIEEITGLLTRPSL----TSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGVL  254 (858)
Q Consensus       181 ~~i~~~g~i~~Lv~lL~~~~~----~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L  254 (858)
                      ..+...||+..|+++++++..    ..++..+++.++.+|=.+.-.-........|..++..+...  +..+...|+..|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            456678899999999998842    24778888999988877665555666777888888888765  678999999999


Q ss_pred             HHHcCCcCchHHHHhCCC-HHHHHHHHccCCCCCHHHHHHHHHHHHHHhc--ChhhHHHHH
Q 003008          255 ANLALSKSNHNILVEAGV-IPKLAMLLKANVEGSKVIRKEARNALIELAK--DDYYRILII  312 (858)
Q Consensus       255 ~nL~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~--~~~~~~~i~  312 (858)
                      -++..++......++..+ ++.|+..|+..   .+.++.++...+-.|..  +++.|+.+.
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~---~~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS---NQEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            999998877666666555 99999999874   34577777766655544  344454443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.60  E-value=1.7  Score=44.33  Aligned_cols=196  Identities=19%  Similarity=0.130  Sum_probs=131.6

Q ss_pred             CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-------C--CH---HHHHHHHHHHHHhhcCchhHHHH
Q 003008          116 DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-------E--SS---AACEAAAGLLRSISSINVYRDLV  183 (858)
Q Consensus       116 d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-------~--~~---~~~~~a~~aL~nLs~~~~~~~~i  183 (858)
                      +++.|+.|+..|..--..-++-.-.+....|.+..|++=.-+       +  +.   .-..+|...|..++.+++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            456799998888766544333323445567888777665532       1  12   22335777778889999999999


Q ss_pred             HhcCcHHHHHHHhcCCCCC---HHHHHHHHHHHHHhccCcc--hHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008          184 AECGAIEEITGLLTRPSLT---SEVKEQSMCTLWNLSVDKK--HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA  258 (858)
Q Consensus       184 ~~~g~i~~Lv~lL~~~~~~---~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~  258 (858)
                      .++...--|..+|+..+.+   ...+-.++++++.|...++  .-..+.+...+|..++.+..|++-.+.-|..++..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            9998877777777765322   3467778899999876443  3556668899999999999999888899999999887


Q ss_pred             CCcCchHHHH-------h-CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHH
Q 003008          259 LSKSNHNILV-------E-AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIE  313 (858)
Q Consensus       259 ~~~~~~~~i~-------~-~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~  313 (858)
                      .++.+-..+.       . ..++..+|.-+...  .++.+-++..++-..|+.++..|..+..
T Consensus       168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~--pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQ--PSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccC--CChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            6654322221       1 23455666644332  2667888999999999999999988876

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.45  E-value=3.2  Score=48.10  Aligned_cols=165  Identities=13%  Similarity=0.074  Sum_probs=92.1

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHH
Q 003008          431 LGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLV  510 (858)
Q Consensus       431 L~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li  510 (858)
                      |++|++.+|-...+.|+.+-. ++.     -...+|.+...|.|.+.-||++|..|+..+-...+   .+..  -.|.|+
T Consensus       108 LQHPNEyiRG~TLRFLckLkE-~EL-----lepl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~p--DapeLi  176 (948)
T KOG1058|consen  108 LQHPNEYIRGSTLRFLCKLKE-PEL-----LEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLIP--DAPELI  176 (948)
T ss_pred             ccCchHhhcchhhhhhhhcCc-HHH-----hhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhcC--ChHHHH
Confidence            678899999999998888643 221     13456666778899999999999999888765311   1110  123344


Q ss_pred             H-hhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc---CCChhHHHHHH-HHHHhhccccchhh
Q 003008          511 N-TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE---SLDPSIELTGN-VIEAAVSETTTSYG  585 (858)
Q Consensus       511 ~-lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~---s~d~~v~~~a~-~l~~L~~~~~~~~~  585 (858)
                      . .|. .+.++..++.|-..|...-.   +.          ++.++.....   +-++..+...+ .|+.-+...     
T Consensus       177 ~~fL~-~e~DpsCkRNAFi~L~~~D~---Er----------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~-----  237 (948)
T KOG1058|consen  177 ESFLL-TEQDPSCKRNAFLMLFTTDP---ER----------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN-----  237 (948)
T ss_pred             HHHHH-hccCchhHHHHHHHHHhcCH---HH----------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC-----
Confidence            3 232 45557777776655544322   11          1222222211   11233333333 332222111     


Q ss_pred             hHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 003008          586 KVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSM  625 (858)
Q Consensus       586 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~  625 (858)
                      .-.+..-|..+..+|.+.++.+...|+.+|-.++.++...
T Consensus       238 p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~al  277 (948)
T KOG1058|consen  238 PAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTAL  277 (948)
T ss_pred             HHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHH
Confidence            1112335677777887777777777777777776655443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=94.43  E-value=0.77  Score=54.15  Aligned_cols=167  Identities=14%  Similarity=0.080  Sum_probs=114.5

Q ss_pred             hCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHH
Q 003008          431 LGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPL  509 (858)
Q Consensus       431 L~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~L  509 (858)
                      +.+.+...+..|.+-+-. +...++.      .-..+.+++...+.+.++++-.-.-|.+.+........+    ++..+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti   97 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI   97 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence            455556666655554444 5543332      224455566666778899988888888888733212111    35666


Q ss_pred             HHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHh
Q 003008          510 VNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVL  588 (858)
Q Consensus       510 i~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~  588 (858)
                      ..=+.+++  +.+|-.|..+++.+-.+.         .-...++++.+++.++++.|+++|+ |+..+.+-..   ....
T Consensus        98 ~kDl~d~N--~~iR~~AlR~ls~l~~~e---------l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~  163 (757)
T COG5096          98 QKDLQDPN--EEIRGFALRTLSLLRVKE---------LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYH  163 (757)
T ss_pred             HhhccCCC--HHHHHHHHHHHHhcChHH---------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhh
Confidence            66677565  889999998888776511         1123477888899999999999999 8888865443   3466


Q ss_pred             hccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008          589 DSVFIGRMIGIMKTSYPDLQRKAASILEFITII  621 (858)
Q Consensus       589 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~  621 (858)
                      +.|.+..+..++.+.+|.+...|+.+|..+-..
T Consensus       164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         164 ELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            778888888888999999999999998887443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.25  E-value=3.7  Score=46.35  Aligned_cols=257  Identities=11%  Similarity=0.056  Sum_probs=143.3

Q ss_pred             cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC---cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCch
Q 003008          188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD---KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH  264 (858)
Q Consensus       188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~---~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~  264 (858)
                      .|...+.+|++.  .|.++..|+.+...|+.-   ...-..+...|  -.|.+-|....+++.-..+.++..+......+
T Consensus       605 ivStiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         605 IVSTILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence            356667789998  889999998887777521   11223333444  34667777788888888888887776554333


Q ss_pred             H-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hh---hHHHHHHc-CCcccccccccccccCCccCCCCC
Q 003008          265 N-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DY---YRILIIEE-GLVPVPMVGADAYKSFRPELHSWP  338 (858)
Q Consensus       265 ~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~---~~~~i~~~-g~v~~~Lv~ll~~~~~~~~l~~~~  338 (858)
                      . .=--.|.+|.|.-.|++.   .+.++.+....+..+|.+ ++   -|+.|+=+ +     |++.+             
T Consensus       681 ~mqpPi~~ilP~ltPILrnk---h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfe-----Lvd~L-------------  739 (975)
T COG5181         681 SMQPPISGILPSLTPILRNK---HQKVVANTIALVGTICMNSPEYIGVREWMRICFE-----LVDSL-------------  739 (975)
T ss_pred             ccCCchhhccccccHhhhhh---hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHH-----HHHHH-------------
Confidence            2 111247889999999876   344777888888888874 32   23333322 2     44432             


Q ss_pred             CCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccc
Q 003008          339 SLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLL  418 (858)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l  418 (858)
                               .+-++..+..|..++.-++..-...++-..-++.+-.+.+||-.+..-.+.+..+     .+.+       
T Consensus       740 ---------ks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae-----~cgp-------  798 (975)
T COG5181         740 ---------KSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAE-----YCGP-------  798 (975)
T ss_pred             ---------HHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHh-----hcCc-------
Confidence                     1111133333444444332111101111111222222223332222211111000     0000       


Q ss_pred             cccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC--ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcCh
Q 003008          419 PWIDGVARLVLILGLEDERAIARAAESIADISI--NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSR  494 (858)
Q Consensus       419 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~  494 (858)
                        -.++|+|+.=-..++..+|.-..++++.+-.  ....+..+  .-..|.|-+-|.+.++.-|+.|...+..|+.+.
T Consensus       799 --fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         799 --FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             --hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence              1266777777778889999988888887321  11222222  234566777888899999999999999998753

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.15  E-value=0.31  Score=47.97  Aligned_cols=93  Identities=15%  Similarity=0.185  Sum_probs=69.5

Q ss_pred             CcHHHHHHHHccC------CHHHHHHHHHHHHHhhcCchhHHHHHh--cCc--HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 003008          146 GCINLTVNLLRSE------SSAACEAAAGLLRSISSINVYRDLVAE--CGA--IEEITGLLTRPSLTSEVKEQSMCTLWN  215 (858)
Q Consensus       146 g~i~~Li~lL~~~------~~~~~~~a~~aL~nLs~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~~~a~~~L~n  215 (858)
                      ..+..|+.....+      ...-....+..+.|++..++.|..+.+  .+.  +..|+.+..+.  +..-+..++.+|.|
T Consensus        52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrN  129 (192)
T PF04063_consen   52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRN  129 (192)
T ss_pred             HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHH
Confidence            3577777777652      234455688999999999999999987  344  67788888887  88888999999999


Q ss_pred             hccCcchHHHHHh---CCCHHHHHHHHc
Q 003008          216 LSVDKKHRLKIAN---TDILPLLIKSLE  240 (858)
Q Consensus       216 Ls~~~~~~~~i~~---~g~i~~Lv~ll~  240 (858)
                      +|++.+....+..   .+.+|.|+--|.
T Consensus       130 ccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen  130 CCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             hhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            9999887666664   345555554444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.78  E-value=0.68  Score=47.48  Aligned_cols=97  Identities=21%  Similarity=0.219  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcC-CcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhc
Q 003008          438 AIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDH-SSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLK  514 (858)
Q Consensus       438 v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~-~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~  514 (858)
                      ....|.+.|..++ -++..+..+.+..+++.|+++|.. ..+.++.++..+|..+-. ++.+...+.+.+|+..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            4556778888855 689999999999999999999954 568999999888877765 8999999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHHHhc
Q 003008          515 NLDISESLMEKTLDILGRIL  534 (858)
Q Consensus       515 ~~~~~~~~~~~a~~~L~~l~  534 (858)
                      +.+.+.+++-.+...|.-..
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             cccccHHHhHHHHHHHHHHH
Confidence            88888888888887765443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.77  E-value=0.11  Score=34.39  Aligned_cols=28  Identities=32%  Similarity=0.409  Sum_probs=24.6

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003008          748 IPRLIEQIKSFSSEAREAAVIELNRIIS  775 (858)
Q Consensus       748 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~  775 (858)
                      +|.+++++++++++||.+|+.+|.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999998763

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.72  E-value=0.085  Score=34.88  Aligned_cols=29  Identities=17%  Similarity=0.193  Sum_probs=25.1

Q ss_pred             chHHHHHhhcCChHHHHHHHHHHHhhhcC
Q 003008          791 IFPLVKLIEEGSNRAVEAGLAILYNLSMD  819 (858)
Q Consensus       791 i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~  819 (858)
                      +|.++++++|++++||..|+.+|.+++.+
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            58899999999999999999999988653

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PRK14707 hypothetical protein; Provisional

Probab=93.46  E-value=34  Score=44.88  Aligned_cols=210  Identities=11%  Similarity=0.064  Sum_probs=114.4

Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHH-HHHHHHHHHHHhhcChhHHHH
Q 003008          422 DGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDA-VRLATTHALERLSVSRGVCQI  499 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~-v~~~a~~aL~~Ls~~~~~~~~  499 (858)
                      ++-..|-.+-+-++..+-..++.+|.. ++++.+.++.+--.+....|-.+-+=++.. .+..+-.....|+..++.++.
T Consensus       416 ~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a  495 (2710)
T PRK14707        416 GVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKA  495 (2710)
T ss_pred             hHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhh
Confidence            355566677788999999999999999 888888888777666555555555545544 444555555666767888888


Q ss_pred             HHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhh-cCCChhHHHHHH-HHHHhh
Q 003008          500 MEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAA-ESLDPSIELTGN-VIEAAV  577 (858)
Q Consensus       500 l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll-~s~d~~v~~~a~-~l~~L~  577 (858)
                      +.-.++...|-.+-+-++ .....+.+.++-..+..   +......+. ...+..+++-+ +.++.+....+. .|..+.
T Consensus       496 ~~~q~~~~~L~aLSK~Pd-~~~c~~A~~~lA~rl~~---~~~l~~~~~-~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l  570 (2710)
T PRK14707        496 LKPQEVVIALHSLSKWPD-TPICAEAASALAERVVD---ELQLRKAFD-AHQVVNTLKALSKWPDKQLCAVAASGLAERL  570 (2710)
T ss_pred             cCHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHhcc---chhhhhhhh-hHHHHHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence            777666666666666444 34444555555555554   111111111 11223333333 345555555555 444433


Q ss_pred             ccccchhhhHhhccchhHHHHhhcC-CCHH-HHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHH
Q 003008          578 SETTTSYGKVLDSVFIGRMIGIMKT-SYPD-LQRKAASILEFITIIDPSMDTIISADIESGLDAIF  641 (858)
Q Consensus       578 ~~~~~~~~~i~~~g~i~~L~~lL~s-~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~  641 (858)
                      .+.... ..-.+.-.+..++..|+. ++.. -+..+.++-..+...++.+..+    ...++..++
T Consensus       571 ~~~~~~-~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l----~~q~lan~l  631 (2710)
T PRK14707        571 ADEPQL-PKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKEL----DPVDVTNVL  631 (2710)
T ss_pred             hcchhh-HHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhc----cHHHHHHHH
Confidence            322222 333445556777777754 3333 3333334444444433332333    344444444

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.45  E-value=8.7  Score=44.70  Aligned_cols=139  Identities=16%  Similarity=0.101  Sum_probs=83.1

Q ss_pred             cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhc-----C----CCccHHHHHHHHHHHHH
Q 003008          462 AGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLK-----N----LDISESLMEKTLDILGR  532 (858)
Q Consensus       462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~-----~----~~~~~~~~~~a~~~L~~  532 (858)
                      .|.+--++..|++++-+||..+......|..+..          +..++.+|+     .    .+.....|.....++..
T Consensus       316 ~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~  385 (948)
T KOG1058|consen  316 QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHA  385 (948)
T ss_pred             HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Confidence            4556667788899999999998888777776443          222222221     1    22234567777777777


Q ss_pred             hcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcccc-chhhhHhhccchhHHHHhhc-CCCHHHHH
Q 003008          533 ILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETT-TSYGKVLDSVFIGRMIGIMK-TSYPDLQR  609 (858)
Q Consensus       533 l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~-~~~~~i~~~g~i~~L~~lL~-s~~~~v~~  609 (858)
                      .+.   .+.    -.....++.+++.+++.++......+ -+....+... .|      ...|..|++-+. -..+.+-+
T Consensus       386 cav---~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------~~ii~~l~~~~~~irS~ki~r  452 (948)
T KOG1058|consen  386 CAV---KFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------ASIIEKLLETFPQIRSSKICR  452 (948)
T ss_pred             Hhh---cCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------HHHHHHHHHhhhhhcccccch
Confidence            766   222    23345688999999988876655555 4444443322 22      223344444432 24556778


Q ss_pred             HHHHHHHHhhcCCc
Q 003008          610 KAASILEFITIIDP  623 (858)
Q Consensus       610 ~a~~~L~~l~~~~~  623 (858)
                      .|+|+++-......
T Consensus       453 galwi~GeYce~~~  466 (948)
T KOG1058|consen  453 GALWILGEYCEGLS  466 (948)
T ss_pred             hHHHHHHHHHhhhH
Confidence            88888887765544

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=93.19  E-value=4.3  Score=45.53  Aligned_cols=57  Identities=12%  Similarity=0.033  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch
Q 003008          118 LDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV  178 (858)
Q Consensus       118 ~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~  178 (858)
                      -+...+++.++.++..+-..  ..+  ...+..|-.+|++.....|-.|.+.|..|++..+
T Consensus       279 mV~lE~Ar~v~~~~~~nv~~--~~~--~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P  335 (898)
T COG5240         279 MVFLEAARAVCALSEENVGS--QFV--DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP  335 (898)
T ss_pred             hhhHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence            57788888888887755331  333  4577888888999888899999999999988543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.09  E-value=4.4  Score=49.49  Aligned_cols=250  Identities=18%  Similarity=0.203  Sum_probs=142.2

Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC----cCch
Q 003008          189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS----KSNH  264 (858)
Q Consensus       189 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~----~~~~  264 (858)
                      ++.+...++.- .....+..|+..|..||..-+.-.++  .-.+|-++.++.....+||..|+.+|..+-..    +..-
T Consensus       424 vs~lts~IR~l-k~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d  500 (1431)
T KOG1240|consen  424 VSVLTSCIRAL-KTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD  500 (1431)
T ss_pred             HHHHHHHHHhh-hcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence            45555555553 25678899999999998432222222  44689999999999999999999999887532    2222


Q ss_pred             HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChh----hHHHHHHcCCcccccccccccccCCccCCCCCCC
Q 003008          265 NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY----YRILIIEEGLVPVPMVGADAYKSFRPELHSWPSL  340 (858)
Q Consensus       265 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~----~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~  340 (858)
                      ..+.-+=.+|.|-.++...+  ...++-.-+..|.-|+....    .-..+...|.... ...      +          
T Consensus       501 aniF~eYlfP~L~~l~~d~~--~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~-~ns------e----------  561 (1431)
T KOG1240|consen  501 ANIFPEYLFPHLNHLLNDSS--AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLND-PNS------E----------  561 (1431)
T ss_pred             chhhHhhhhhhhHhhhccCc--cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccC-ccc------c----------
Confidence            23333455677777775532  22244455566666654211    1111122221110 000      0          


Q ss_pred             CCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccc
Q 003008          341 PDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPW  420 (858)
Q Consensus       341 ~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~  420 (858)
                         .                 .     ...   --+....+++.                                    
T Consensus       562 ---t-----------------~-----~~~---~~~~~~~~L~~------------------------------------  577 (1431)
T KOG1240|consen  562 ---T-----------------A-----PEQ---NYNTELQALHH------------------------------------  577 (1431)
T ss_pred             ---c-----------------c-----ccc---ccchHHHHHHH------------------------------------
Confidence               0                 0     000   00001111111                                    


Q ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHc----CcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhH
Q 003008          421 IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEA----GAIKYLVKLLDHSSDAVRLATTHALERLSVSRGV  496 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~----g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~  496 (858)
                       .+-...+.||.++++-|++.-...|.-+|.      .+...    =.++.|+..|.+.+..+|-+=...+.-++..-..
T Consensus       578 -~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~  650 (1431)
T KOG1240|consen  578 -TVEQMVSSLLSDSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW  650 (1431)
T ss_pred             -HHHHHHHHHHcCCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee
Confidence             112234567777777888877777776553      12222    2588999999999888887655555444331111


Q ss_pred             HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                      |  -++++.+|.|.+-|.+++  +-|...|..+|.-|+.
T Consensus       651 r--s~seyllPLl~Q~ltD~E--E~Viv~aL~~ls~Lik  685 (1431)
T KOG1240|consen  651 R--SVSEYLLPLLQQGLTDGE--EAVIVSALGSLSILIK  685 (1431)
T ss_pred             e--eHHHHHHHHHHHhccCcc--hhhHHHHHHHHHHHHH
Confidence            1  124567888888898776  6777788888887776

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=93.00  E-value=28  Score=42.53  Aligned_cols=150  Identities=16%  Similarity=0.175  Sum_probs=89.0

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhhcCchh
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSES-SAACEAAAGLLRSISSINVY  179 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~-~~~~~~a~~aL~nLs~~~~~  179 (858)
                      ++.+..|++.|+ +.|..+|..|++.++.++.--+.   ...  ..+|...+.++...+ +..-..++-+|..|+..---
T Consensus       340 E~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp~---~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL  413 (1133)
T KOG1943|consen  340 EFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLPP---ELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL  413 (1133)
T ss_pred             HHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCcH---HHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence            467777788886 78889999999999999876552   222  456677777655443 55555788888888764311


Q ss_pred             HHHHHhcCcHHHHHHHhcCC------CCCHHHHHHHHHHHHHhccCcch---HHHHHhCCCHHHHHHHHccCCHHHHHHH
Q 003008          180 RDLVAECGAIEEITGLLTRP------SLTSEVKEQSMCTLWNLSVDKKH---RLKIANTDILPLLIKSLEDENMKVKEAA  250 (858)
Q Consensus       180 ~~~i~~~g~i~~Lv~lL~~~------~~~~~~~~~a~~~L~nLs~~~~~---~~~i~~~g~i~~Lv~ll~~~~~~~~~~a  250 (858)
                      ..... ..++|.+++-|.-.      +....++..|+-+.|.++..-+.   +. +.+.=.-..|+..+-+++-.+|..|
T Consensus       414 lps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAA  491 (1133)
T KOG1943|consen  414 LPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAA  491 (1133)
T ss_pred             chHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHH
Confidence            11111 12355555543311      01345788888888888743221   22 2211111123333445566789999


Q ss_pred             HHHHHHHc
Q 003008          251 GGVLANLA  258 (858)
Q Consensus       251 ~~~L~nL~  258 (858)
                      ..++....
T Consensus       492 sAAlqE~V  499 (1133)
T KOG1943|consen  492 SAALQENV  499 (1133)
T ss_pred             HHHHHHHh
Confidence            99987654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=92.84  E-value=2.5  Score=51.45  Aligned_cols=108  Identities=17%  Similarity=0.083  Sum_probs=72.3

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA  502 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~  502 (858)
                      .++.|+.+|++.|+.+|..=...+..++..--  ..-++++.+|.|.+-|.+..+.|...|..+|..|....-.++..+.
T Consensus       618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~  695 (1431)
T KOG1240|consen  618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK  695 (1431)
T ss_pred             hHHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH
Confidence            67788999999988888776666665332111  0113467788888889999999999999888888864333332221


Q ss_pred             cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                       ..++...-+|-.|+  ..+|..++..+.....
T Consensus       696 -~i~~~v~PlL~hPN--~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  696 -DILQDVLPLLCHPN--LWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             -HHHHhhhhheeCch--HHHHHHHHHHHHHHHh
Confidence             13344444555566  7889988888776654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=92.79  E-value=30  Score=42.30  Aligned_cols=111  Identities=14%  Similarity=0.062  Sum_probs=71.4

Q ss_pred             cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc
Q 003008          462 AGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM  540 (858)
Q Consensus       462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~  540 (858)
                      ++.++.|..-|++.+..||-.|+.-++.++. .|  .. +. ..+|...++++. +-+++..-.-++.+|+.++..|.-.
T Consensus       340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~-La-d~vi~svid~~~-p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PE-LA-DQVIGSVIDLFN-PAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HH-HH-HHHHHHHHHhcC-cCCchhHHHHHHHHHHHHHhcCCcc
Confidence            5788889999999999999999999999998 33  11 11 135677777665 5555666778899999998754322


Q ss_pred             ccccccccCcCcHHHHHhhcCCC--------hhHHHHHH-HHHHhhcccc
Q 003008          541 KSKFYDIPVNGSEKGLDAAESLD--------PSIELTGN-VIEAAVSETT  581 (858)
Q Consensus       541 ~~~~~i~~~~~i~~Li~ll~s~d--------~~v~~~a~-~l~~L~~~~~  581 (858)
                      ..+.    ...++.++.-+.-++        ..++..|| .+..+...+.
T Consensus       415 ps~l----~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays  460 (1133)
T KOG1943|consen  415 PSLL----EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYS  460 (1133)
T ss_pred             hHHH----HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCC
Confidence            2111    123444444443322        35666676 6655554443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=92.62  E-value=7.3  Score=41.82  Aligned_cols=190  Identities=12%  Similarity=0.064  Sum_probs=109.0

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHH---HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC---hhH
Q 003008          424 VARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFK---EAGAIKYLVKLLDHSSDAVRLATTHALERLSVS---RGV  496 (858)
Q Consensus       424 i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~---~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~---~~~  496 (858)
                      +...+..+.......|..+...+.+ +....-  ..++   ..-.+..+.+.++.+..+-+..|+.+++-++-.   .+.
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~--~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL--PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence            4455666777778999999999999 433211  1222   234577778888877766666777777776552   122


Q ss_pred             HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCC-cccccccccccCcCcH--HHHHhhcC----------CC
Q 003008          497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPS-KEMKSKFYDIPVNGSE--KGLDAAES----------LD  563 (858)
Q Consensus       497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~i~~~~~i~--~Li~ll~s----------~d  563 (858)
                      ...+.+ ...|.|...+.+++....++..++.||+-++.-+ .+...-...  -..+.  +.....++          ++
T Consensus       123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDD  199 (309)
T ss_pred             HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCc
Confidence            333333 3678888899877666667777777776654311 011100000  00112  11111121          12


Q ss_pred             hhHHHHHH-HHHHhhccccc-hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          564 PSIELTGN-VIEAAVSETTT-SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       564 ~~v~~~a~-~l~~L~~~~~~-~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                      +.+...|+ +-..|+..-.. ...... ...+|.|..+|.+.+.+||..|-.+|+-|.
T Consensus       200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            34555555 44444322221 102111 346899999999999999999999888774

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.59  E-value=0.69  Score=40.05  Aligned_cols=69  Identities=17%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHh
Q 003008          462 AGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRI  533 (858)
Q Consensus       462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l  533 (858)
                      ...+++++..+.+++..||..|+.+|.|++........-.-....+.|..++.+++  +.++..| ..|-++
T Consensus        26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d--~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD--ENVRSAA-ELLDRL   94 (97)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--hhHHHHH-HHHHHH
Confidence            45799999999999999999999999999973221111112345667777887665  6666554 444443

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.58  E-value=0.3  Score=43.61  Aligned_cols=71  Identities=13%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             hcchHHHHHHhc-cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008          745 YEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL  816 (858)
Q Consensus       745 ~~~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL  816 (858)
                      ...+..|+++|. +.++.+..-||.=|+.++...+. ....+-+.|+-..+++++++++++||..|+.++..|
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            346899999995 77888888899999998877654 444666788888888999999999999999998554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.47  E-value=0.63  Score=37.72  Aligned_cols=67  Identities=18%  Similarity=0.187  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcC-CcHHHHHHHHHHHHHhhcChhHHHHHHHcCC
Q 003008          439 IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDH-SSDAVRLATTHALERLSVSRGVCQIMEAEGV  505 (858)
Q Consensus       439 ~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~  505 (858)
                      +..|.+++++++.++.....+.+.+.++.++++..+ +...+|-.|..+|+-++...+..+.+.+.|.
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            467899999998888888888889999999999875 4589999999999999999998888887764

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=92.04  E-value=11  Score=40.36  Aligned_cols=108  Identities=24%  Similarity=0.244  Sum_probs=65.3

Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH--hCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC---cCchH
Q 003008          191 EITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA--NTDILPLLIKSLEDENMKVKEAAGGVLANLALS---KSNHN  265 (858)
Q Consensus       191 ~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~---~~~~~  265 (858)
                      ..+..+...  ....|+.++..+.++....-....+.  ....+..+.+.++.+..+-+..|+.++.-++-.   .....
T Consensus        47 ~~Id~l~eK--~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   47 EAIDLLTEK--SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHhc--CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            334444444  56777777777777653322212221  233567888889988776677787877777654   23344


Q ss_pred             HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 003008          266 ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELA  302 (858)
Q Consensus       266 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~  302 (858)
                      .+.+ ...|.|...+..++. ....+..++.+|.-++
T Consensus       125 ei~~-~~~~~L~~~l~d~s~-~~~~R~~~~~aLai~~  159 (309)
T PF05004_consen  125 EIFE-ELKPVLKRILTDSSA-SPKARAACLEALAICT  159 (309)
T ss_pred             HHHH-HHHHHHHHHHhCCcc-chHHHHHHHHHHHHHH
Confidence            5544 567888888876643 3445556666666655

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=91.91  E-value=2.4  Score=41.54  Aligned_cols=92  Identities=18%  Similarity=0.192  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcH-HHHHH
Q 003008          116 DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAI-EEITG  194 (858)
Q Consensus       116 d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i-~~Lv~  194 (858)
                      |+.+|.+++.+++.++..-++    ++  ...++.+...|+++++.+|..|+..|..|...+-.+    -.|-+ ..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~----~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN----LV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH----HH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence            467999999999999875443    33  567899999999999999999999999997654211    12333 77788


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHhccC
Q 003008          195 LLTRPSLTSEVKEQSMCTLWNLSVD  219 (858)
Q Consensus       195 lL~~~~~~~~~~~~a~~~L~nLs~~  219 (858)
                      ++.++  +++++..|...+..+...
T Consensus        71 ~l~D~--~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDE--NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCC--CHHHHHHHHHHHHHHHHh
Confidence            88887  999999999999888765

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=91.56  E-value=0.91  Score=44.46  Aligned_cols=88  Identities=13%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHh
Q 003008          759 SSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRI  838 (858)
Q Consensus       759 ~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~l  838 (858)
                      ++.+|.+++.+++-|+...+. ....     .++.+...|+|+++.||+.|+.+|..|...+-.+.   +...+..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~-~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN-LVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH-HHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHH
Confidence            578999999999998876654 2222     24788899999999999999999999987654432   11223677788


Q ss_pred             hhcCChhH-HHHHHHHhc
Q 003008          839 VLSQRPQW-TRALRLLRN  855 (858)
Q Consensus       839 l~~~~~~~-~~al~~l~~  855 (858)
                      +.++++.+ ..|...+..
T Consensus        72 l~D~~~~Ir~~A~~~~~e   89 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSE   89 (178)
T ss_pred             HcCCCHHHHHHHHHHHHH
Confidence            88999988 555555443

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.04  E-value=4.1  Score=44.67  Aligned_cols=130  Identities=17%  Similarity=0.150  Sum_probs=100.0

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhhcCch----hHHHHHhcCcHHHHHHHhcCCC---C--CHHHHHHHHHHHHHhccCc
Q 003008          150 LTVNLLRSESSAACEAAAGLLRSISSINV----YRDLVAECGAIEEITGLLTRPS---L--TSEVKEQSMCTLWNLSVDK  220 (858)
Q Consensus       150 ~Li~lL~~~~~~~~~~a~~aL~nLs~~~~----~~~~i~~~g~i~~Lv~lL~~~~---~--~~~~~~~a~~~L~nLs~~~  220 (858)
                      .+..++...+++.+-.|+-..-.+..+++    +|+.+.++=|.+-+-+++.+.+   +  +...+..+..+|.-+|..+
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35667777788888888888888887654    7888999888898888888653   1  2244556778888889888


Q ss_pred             ch--HHHHHhCCCHHHHHHHHccC-CHH------HHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHc
Q 003008          221 KH--RLKIANTDILPLLIKSLEDE-NMK------VKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLK  281 (858)
Q Consensus       221 ~~--~~~i~~~g~i~~Lv~ll~~~-~~~------~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~  281 (858)
                      +.  ...++  ..||.|.+.+..+ +++      +.+.+-.+|..++..+.+...++..|+++.+-++-.
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence            64  34443  4589999998765 444      789999999999999999999999999999997643

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.87  E-value=20  Score=36.28  Aligned_cols=206  Identities=17%  Similarity=0.084  Sum_probs=134.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC------------CHHHHHHHHHHHH
Q 003008          104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE------------SSAACEAAAGLLR  171 (858)
Q Consensus       104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~------------~~~~~~~a~~aL~  171 (858)
                      +..++--+. ++  ..++.++..|..--..-..-...+....|....+++-.-..            ...-..++...|.
T Consensus        28 ~~~~i~~l~-~~--p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQ  104 (293)
T KOG3036|consen   28 AYQLILSLV-SP--PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQ  104 (293)
T ss_pred             hhhHHHHhh-CC--chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHH
Confidence            444444443 33  35777776665543322221224445556655555443211            2233446888888


Q ss_pred             HhhcCchhHHHHHhcCcHHHHHHHhcCCC---CCHHHHHHHHHHHHHhccCcc--hHHHHHhCCCHHHHHHHHccCCHHH
Q 003008          172 SISSINVYRDLVAECGAIEEITGLLTRPS---LTSEVKEQSMCTLWNLSVDKK--HRLKIANTDILPLLIKSLEDENMKV  246 (858)
Q Consensus       172 nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~  246 (858)
                      .++.+++.|..+.++..---+-.+|...+   -....+..+++++..|-.+++  .-..+...+.+|..++.+..|++..
T Consensus       105 cvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelS  184 (293)
T KOG3036|consen  105 CVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELS  184 (293)
T ss_pred             HHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHH
Confidence            88999999999999876555555665432   145678889999999986553  3455568899999999999999999


Q ss_pred             HHHHHHHHHHHcCCcCchHHHHh--------CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHc
Q 003008          247 KEAAGGVLANLALSKSNHNILVE--------AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEE  314 (858)
Q Consensus       247 ~~~a~~~L~nL~~~~~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~  314 (858)
                      +.-|+.++..+-.++.+-.-+.+        +-.+..+|..+.+.  .+..+-.++.++..+|+.++..|..+..+
T Consensus       185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~--ps~RllKhviRcYlrLsdnprar~aL~~c  258 (293)
T KOG3036|consen  185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM--PSPRLLKHVIRCYLRLSDNPRARAALRSC  258 (293)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence            99999999999877765432221        12345555544332  25667889999999999999877766443

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=90.68  E-value=2.2  Score=49.19  Aligned_cols=152  Identities=14%  Similarity=0.049  Sum_probs=94.7

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHh-hcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHc
Q 003008          427 LVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKL-LDHSSDAVRLATTHALERLSV-SRGVCQIMEAE  503 (858)
Q Consensus       427 Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~L-L~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~  503 (858)
                      +-+++.+.|+-+|....-+++. -+++..       .++|..|++. .++.+++||++|+.+|+-++. +++        
T Consensus       524 I~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------  588 (929)
T KOG2062|consen  524 IKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------  588 (929)
T ss_pred             HHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------
Confidence            3466777888888877777766 233322       4678888887 677889999999999999887 554        


Q ss_pred             CChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh-hcccc
Q 003008          504 GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA-VSETT  581 (858)
Q Consensus       504 g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L-~~~~~  581 (858)
                       .++..+.+|. .+.++.+|.-++.+|.-.|...   ..+      ..+..|-.+++++..-|+..|+ ++.-+ ++..+
T Consensus       589 -~~~s~V~lLs-es~N~HVRyGaA~ALGIaCAGt---G~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~  657 (929)
T KOG2062|consen  589 -QLPSTVSLLS-ESYNPHVRYGAAMALGIACAGT---GLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTE  657 (929)
T ss_pred             -hchHHHHHHh-hhcChhhhhhHHHHHhhhhcCC---CcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence             4677778887 4446899999999999888721   111      1122333334444455777777 55433 23222


Q ss_pred             chhhhHhhccchhHHHHhhcCCCHH
Q 003008          582 TSYGKVLDSVFIGRMIGIMKTSYPD  606 (858)
Q Consensus       582 ~~~~~i~~~g~i~~L~~lL~s~~~~  606 (858)
                      .-+..+  .+..+.+.+++.+...+
T Consensus       658 ~~~pkv--~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  658 QLCPKV--NGFRKQLEKVINDKHED  680 (929)
T ss_pred             ccCchH--HHHHHHHHHHhhhhhhH
Confidence            111222  23445566666554443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.65  E-value=7.7  Score=39.08  Aligned_cols=110  Identities=12%  Similarity=0.090  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHH-------h-cC
Q 003008          116 DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVA-------E-CG  187 (858)
Q Consensus       116 d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~-------~-~g  187 (858)
                      ....|..++.+++.+...++..+-..+-..++||..++.+..+++..+..|..++..+-.++..-.-+-       . .-
T Consensus       138 fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~  217 (293)
T KOG3036|consen  138 FEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVAL  217 (293)
T ss_pred             hHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHH
Confidence            346788899999988865553333344479999999999999999999999999999877664322211       1 12


Q ss_pred             cHHHHHH-HhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003008          188 AIEEITG-LLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA  227 (858)
Q Consensus       188 ~i~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~  227 (858)
                      .+..++. +.+.+  ++...+++.++..+||.++..|..+.
T Consensus       218 ~L~kmv~~l~~~p--s~RllKhviRcYlrLsdnprar~aL~  256 (293)
T KOG3036|consen  218 VLGKMVFQLVSMP--SPRLLKHVIRCYLRLSDNPRARAALR  256 (293)
T ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3344444 55555  89999999999999999998877775

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=90.60  E-value=3.6  Score=48.31  Aligned_cols=34  Identities=9%  Similarity=0.197  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHhcChhhHHHHHHcCCcccccccc
Q 003008          290 IRKEARNALIELAKDDYYRILIIEEGLVPVPMVGA  324 (858)
Q Consensus       290 ~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~l  324 (858)
                      +.-.+...|+.|+.+..-....++.|||.. |..+
T Consensus       369 l~~~~~k~~~~l~~h~kfa~~fv~~~gi~k-ll~v  402 (1516)
T KOG1832|consen  369 LLPDVMKLICALAAHRKFAAMFVERRGILK-LLAV  402 (1516)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHhhhhHH-HhcC
Confidence            445678888888888888899999999995 7764

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=90.37  E-value=11  Score=40.88  Aligned_cols=164  Identities=10%  Similarity=0.062  Sum_probs=103.8

Q ss_pred             HHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-Chh-----HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHH
Q 003008          459 FKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRG-----VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGR  532 (858)
Q Consensus       459 l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~-----~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~  532 (858)
                      +...+.+..|+..|..-+-+.|..++....++-. ...     ....+.+.  .|.++..|-.+.+.+++--.+...|..
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhcCccccchHHHHHHH
Confidence            4457899999999999899999999999999976 222     23334322  233333332233334455556666666


Q ss_pred             hcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcc-ccchhhhHhhc---cchhHHHHhhcCCCHHH
Q 003008          533 ILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSE-TTTSYGKVLDS---VFIGRMIGIMKTSYPDL  607 (858)
Q Consensus       533 l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~-~~~~~~~i~~~---g~i~~L~~lL~s~~~~v  607 (858)
                      +..   .......+.....+..+.+....++=++...|. .+..+... ...- ......   ..+.....||.++|-..
T Consensus       150 c~k---~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~-a~fl~~n~d~ff~~~~~Ll~s~NYvt  225 (335)
T PF08569_consen  150 CIK---HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLV-AEFLSNNYDRFFQKYNKLLESSNYVT  225 (335)
T ss_dssp             HTT---SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHH-HHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred             HHh---hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHccCCCeEe
Confidence            665   333333455555666788888888888888887 66665432 2222 233222   34567788899999999


Q ss_pred             HHHHHHHHHHhhcCCcchHHH
Q 003008          608 QRKAASILEFITIIDPSMDTI  628 (858)
Q Consensus       608 ~~~a~~~L~~l~~~~~~~~~~  628 (858)
                      ++.++..|+.+..+..+...+
T Consensus       226 krqslkLL~ellldr~n~~vm  246 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSNFNVM  246 (335)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHH
T ss_pred             ehhhHHHHHHHHHchhHHHHH
Confidence            999999998887766655544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.25  E-value=1.8  Score=50.54  Aligned_cols=195  Identities=14%  Similarity=0.084  Sum_probs=126.6

Q ss_pred             ccccccccHHHHHHHhCCCCHHHHHHHHHHHH-HhcCChhhHHHHHHcCcHHHHHHhhcCCcH-HHHHHHHHHHHHhhc-
Q 003008          416 TLLPWIDGVARLVLILGLEDERAIARAAESIA-DISINEHMRMLFKEAGAIKYLVKLLDHSSD-AVRLATTHALERLSV-  492 (858)
Q Consensus       416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~-~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~-~v~~~a~~aL~~Ls~-  492 (858)
                      ......|+...|+.|..-..+..+.....+|. .+....+ +    ....++++..+++.... .-...+..++.||++ 
T Consensus       498 ~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~  572 (748)
T KOG4151|consen  498 AKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEALTNLASI  572 (748)
T ss_pred             CccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCc
Confidence            34555678888888877777777777777777 2221100 0    13356666666654432 234678899999998 


Q ss_pred             ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccccccc-CcCcHHHHHhhcCCChhHHHHHH
Q 003008          493 SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP-VNGSEKGLDAAESLDPSIELTGN  571 (858)
Q Consensus       493 ~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~-~~~i~~Li~ll~s~d~~v~~~a~  571 (858)
                      +...|+.+.+.-+++.+-.++.  ++.+..|..++.++.||.-.  +......+++ ..+++....++...+......++
T Consensus       573 s~s~r~~i~ke~~~~~ie~~~~--ee~~~lqraa~e~~~NLl~~--~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a  648 (748)
T KOG4151|consen  573 SESDRQKILKEKALGKIEELMT--EENPALQRAALESIINLLWS--PLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA  648 (748)
T ss_pred             chhhHHHHHHHhcchhhHHHhh--cccHHHHHHHHHHHHHHHhh--HHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence            6777888999988888777776  44488899999999999862  2333344555 45666666666655555555555


Q ss_pred             -HHHHhhccccchhh-hHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          572 -VIEAAVSETTTSYG-KVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       572 -~l~~L~~~~~~~~~-~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                       ++..+.....+.|. ...-..+...++.++.+++.++|...+....|+.
T Consensus       649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~  698 (748)
T KOG4151|consen  649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF  698 (748)
T ss_pred             ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence             43333333333223 2233466778889999999999999888777753

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=90.19  E-value=6.2  Score=44.19  Aligned_cols=155  Identities=14%  Similarity=0.164  Sum_probs=111.3

Q ss_pred             cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCc--cHHHHHHHHHHHHHhcCCCcccc
Q 003008          464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI--SESLMEKTLDILGRILDPSKEMK  541 (858)
Q Consensus       464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~--~~~~~~~a~~~L~~l~~~~~~~~  541 (858)
                      ....+...+.+++..-+..+..-|..++.+......+.+..++..|..++.+...  ..++......+++.+...+.   
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv---  160 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV---  160 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce---
Confidence            3566778888888888888999999999999999999999999999999986553  34555555666666655322   


Q ss_pred             cccccccCcCcHHHHHhhcC--CChhHHHHHH-HHHHhhcccc-chhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHH
Q 003008          542 SKFYDIPVNGSEKGLDAAES--LDPSIELTGN-VIEAAVSETT-TSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEF  617 (858)
Q Consensus       542 ~~~~i~~~~~i~~Li~ll~s--~d~~v~~~a~-~l~~L~~~~~-~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~  617 (858)
                      ..+...+..++.....+.+-  .+..+...|+ .+.++..... .+ +.+.+.--+..|+..++.++..++.+|...+..
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~-~~v~eev~i~~li~hlq~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLR-QLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHH-HHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            22223333445444455432  3455666677 6777765444 45 778888889999999999999999999988888


Q ss_pred             hhcCC
Q 003008          618 ITIID  622 (858)
Q Consensus       618 l~~~~  622 (858)
                      +....
T Consensus       240 l~~~a  244 (713)
T KOG2999|consen  240 LFRKA  244 (713)
T ss_pred             HHhhC
Confidence            86543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=88.26  E-value=1.9  Score=34.95  Aligned_cols=67  Identities=15%  Similarity=0.133  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCC
Q 003008          163 CEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD  230 (858)
Q Consensus       163 ~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g  230 (858)
                      ...|+|++++++..+..-..+.+.+.++.++++....+ ...+|--|..+|.-++.+.+....+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            34699999999998877777778899999999988753 67888889999999999998888777665

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=88.21  E-value=21  Score=42.47  Aligned_cols=158  Identities=11%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             HHHHcCcHHHHHHhhcCC--------cHHHHHHHHHHHHHhhcChhHHHHHHHc--------CChHHHHHhhc-C-CCcc
Q 003008          458 LFKEAGAIKYLVKLLDHS--------SDAVRLATTHALERLSVSRGVCQIMEAE--------GVVHPLVNTLK-N-LDIS  519 (858)
Q Consensus       458 ~l~~~g~i~~Lv~LL~~~--------~~~v~~~a~~aL~~Ls~~~~~~~~l~~~--------g~i~~Li~lL~-~-~~~~  519 (858)
                      -+...+++..++.+..-+        -.+..+.|...|..+..-|+.+..+..+        .||..|++.-. . ...+
T Consensus       596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D  675 (1516)
T KOG1832|consen  596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD  675 (1516)
T ss_pred             HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence            355567777777776532        2355566677777777777777766543        25555544322 1 2226


Q ss_pred             HHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC--CChhHHHHH---H-HHHHhhccccchhhhHhhccch
Q 003008          520 ESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES--LDPSIELTG---N-VIEAAVSETTTSYGKVLDSVFI  593 (858)
Q Consensus       520 ~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s--~d~~v~~~a---~-~l~~L~~~~~~~~~~i~~~g~i  593 (858)
                      ++++..|..+|-|+..+  ++.++         +..+.-..+  .++.....+   . .|.+-.  .+.. ..++...||
T Consensus       676 pei~~~AL~vIincVc~--pp~~r---------~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l--~~mw-~~Vr~ndGI  741 (1516)
T KOG1832|consen  676 PEIIQPALNVIINCVCP--PPTTR---------PSTIVAVGSQSGDRRIFLGAGTKSAKLEQVL--RQMW-EAVRGNDGI  741 (1516)
T ss_pred             HHHHHHHHhhhheeecC--CCCcc---------hhhhhhccccCCCccccccCCCchHHHHHHH--HHHH-HHHhcCccH
Confidence            89999999999998763  22222         222222222  222211110   0 111111  1122 556778999


Q ss_pred             hHHHHhhcCCCH-----HHHHHHHHHHHHhhcCCcchHHHH
Q 003008          594 GRMIGIMKTSYP-----DLQRKAASILEFITIIDPSMDTII  629 (858)
Q Consensus       594 ~~L~~lL~s~~~-----~v~~~a~~~L~~l~~~~~~~~~~~  629 (858)
                      ..|+.||+-.+|     -++..|+.+|..|+.++..+..+.
T Consensus       742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIlt  782 (1516)
T KOG1832|consen  742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILT  782 (1516)
T ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHH
Confidence            999999986544     489999999999999888776653

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=88.03  E-value=5.6  Score=42.56  Aligned_cols=170  Identities=17%  Similarity=0.149  Sum_probs=109.0

Q ss_pred             CcHHHHH-HHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC--ch
Q 003008          102 SYVALFV-QMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI--NV  178 (858)
Q Consensus       102 g~i~~lv-~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~--~~  178 (858)
                      +.+..|+ .-++ +.|+.+|..++++|+-.+.-+...      ....++.+...++.++++++..|+.++..+...  .+
T Consensus        26 ~ll~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~~~------a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~   98 (298)
T PF12719_consen   26 SLLDSLILPAVQ-SSDPAVRELALKCLGLCCLLDKEL------AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID   98 (298)
T ss_pred             HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence            4455555 4666 788899999999999888765532      134567888888888999999999999988542  22


Q ss_pred             hHHH-------HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC----CHHHH
Q 003008          179 YRDL-------VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE----NMKVK  247 (858)
Q Consensus       179 ~~~~-------i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~  247 (858)
                      .-..       ......+..+.+.+.+.  +++++..++..++.|-..+....   ....+..|+-+.-++    +..++
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~Lr  173 (298)
T PF12719_consen   99 IFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLR  173 (298)
T ss_pred             hccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHH
Confidence            1111       22245677888889887  99999999999998764433221   112233443333222    34555


Q ss_pred             HHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccC
Q 003008          248 EAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN  283 (858)
Q Consensus       248 ~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~  283 (858)
                      ..-...+-..+..............++.+-.+.+..
T Consensus       174 Q~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  174 QCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            555555555565554334444556777777777654

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=87.89  E-value=64  Score=39.22  Aligned_cols=180  Identities=18%  Similarity=0.216  Sum_probs=104.9

Q ss_pred             HHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhc----CCC--CCHHHHHHH
Q 003008          141 IMQFSGCINLTVNLLRSE-----SSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLT----RPS--LTSEVKEQS  209 (858)
Q Consensus       141 ii~~~g~i~~Li~lL~~~-----~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~----~~~--~~~~~~~~a  209 (858)
                      ++.+.|++..++.++.+-     +.+.....+..|...++-+.||+.+.+.|+++.|+..++    ...  ..+.+.+..
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            455899999999999753     345555677777777888899999999999999988664    320  014555554


Q ss_pred             HHHHHHhccC---cchHHH--HHhCC--------CHHHHHHHHccC----CHHHHHHHHHHHHHHcCCcCchH-HHHhCC
Q 003008          210 MCTLWNLSVD---KKHRLK--IANTD--------ILPLLIKSLEDE----NMKVKEAAGGVLANLALSKSNHN-ILVEAG  271 (858)
Q Consensus       210 ~~~L~nLs~~---~~~~~~--i~~~g--------~i~~Lv~ll~~~----~~~~~~~a~~~L~nL~~~~~~~~-~i~~~g  271 (858)
                      +.++--|...   ......  .....        .+..|++.+.++    ++.+....+++|-+|+++...+. .+++. 
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-  270 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-  270 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence            4444443211   111100  01111        255666666554    68899999999999999876554 33331 


Q ss_pred             CHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-------hhhHHHHHHcCCcccccccc
Q 003008          272 VIPKLAMLLKANVEGSKVIRKEARNALIELAKD-------DYYRILIIEEGLVPVPMVGA  324 (858)
Q Consensus       272 ~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-------~~~~~~i~~~g~v~~~Lv~l  324 (858)
                       ..+.+.+=+-.....+. -...+..++.++..       ..-|..+++.|.+.. .++.
T Consensus       271 -F~p~l~f~~~D~~~~~~-~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~-a~~Y  327 (802)
T PF13764_consen  271 -FKPYLDFDKFDEEHSPD-EQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQD-AIDY  327 (802)
T ss_pred             -HHHhcChhhcccccCch-HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHH-HHHH
Confidence             12222211111111111 12335555555542       244677888887774 6654

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=87.62  E-value=3.6  Score=46.01  Aligned_cols=125  Identities=13%  Similarity=0.037  Sum_probs=86.5

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHh-hcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcC
Q 003008          427 LVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKL-LDHSSDAVRLATTHALERLSVSRGVCQIMEAEG  504 (858)
Q Consensus       427 Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~L-L~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g  504 (858)
                      +-+|+.+.|+..+...+-+++. -+++..       .|+|..|++. .++.+++||++|+.||+-++..+        ..
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~  585 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RD  585 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cc
Confidence            4467778888888877777766 233222       5788888887 67888999999999999988732        23


Q ss_pred             ChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008          505 VVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA  576 (858)
Q Consensus       505 ~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L  576 (858)
                      .++..+++|.. +.+..++...+.+|.-.|....+         .-.+..|-.|+.+.+.-|+..|+ ++.-+
T Consensus       586 ~lv~tvelLs~-shN~hVR~g~AvaLGiacag~G~---------~~a~diL~~L~~D~~dfVRQ~AmIa~~mI  648 (926)
T COG5116         586 LLVGTVELLSE-SHNFHVRAGVAVALGIACAGTGD---------KVATDILEALMYDTNDFVRQSAMIAVGMI  648 (926)
T ss_pred             hhhHHHHHhhh-ccchhhhhhhHHHhhhhhcCCcc---------HHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence            67777788874 34578888888888877762211         11345566667777777788777 55443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=87.43  E-value=6.7  Score=40.40  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHHHHHhCCCHHHHHHHH
Q 003008          162 ACEAAAGLLRSISS-INVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRLKIANTDILPLLIKSL  239 (858)
Q Consensus       162 ~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll  239 (858)
                      ....|+..|.-++- +++.|.......++..++.+|... ..+.++..++.+|..+- .++.|...+-+.+|+..++.++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~-~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS-NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC-CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            34557788888876 557899999999999999999553 26788888888887765 6678888888999999999999


Q ss_pred             ccC--CHHHHHHHHHHHHHH
Q 003008          240 EDE--NMKVKEAAGGVLANL  257 (858)
Q Consensus       240 ~~~--~~~~~~~a~~~L~nL  257 (858)
                      ++.  +.+++..+...|.-.
T Consensus       186 k~~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             ccccccHHHhHHHHHHHHHH
Confidence            877  667777777766544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=86.81  E-value=14  Score=40.75  Aligned_cols=66  Identities=11%  Similarity=0.022  Sum_probs=45.1

Q ss_pred             ccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhh-cCChHHHHHHHHHHHhhhcCcc
Q 003008          756 KSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIE-EGSNRAVEAGLAILYNLSMDSE  821 (858)
Q Consensus       756 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~nL~~~~~  821 (858)
                      -..+..||-++|-|+.||+.....+-...=+.....+.|+.++. ..|.+||..|+.+|..-...+.
T Consensus       540 ~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~  606 (728)
T KOG4535|consen  540 TEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ  606 (728)
T ss_pred             cccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence            46678899999999999987654311111122333466677775 4688999999999977765543

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.07  E-value=34  Score=38.20  Aligned_cols=148  Identities=11%  Similarity=0.039  Sum_probs=83.6

Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHhhcC-hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccc
Q 003008          466 KYLVKLLDHSSDAVRLATTHALERLSVS-RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKF  544 (858)
Q Consensus       466 ~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  544 (858)
                      ..|..-.++++..+|..|+..|+|++.. |+-+... ..-.+..++.-|-++.. .+|+-.+..+|..+..   ......
T Consensus       261 ~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~---~~~~~~  335 (533)
T KOG2032|consen  261 LSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLE---KASNDD  335 (533)
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHH---hhhhcc
Confidence            3344445567789999999999999984 3322222 22245556655554443 7788888888877765   111110


Q ss_pred             -ccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchh-hhHhh--ccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008          545 -YDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSY-GKVLD--SVFIGRMIGIMKTSYPDLQRKAASILEFI  618 (858)
Q Consensus       545 -~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~-~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~l  618 (858)
                       .-+..+....+..+..+.+++.+.++. ....|..-..... ..+.+  .+...+++--+.++++.+-..|-..+..+
T Consensus       336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c  414 (533)
T KOG2032|consen  336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTC  414 (533)
T ss_pred             hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhc
Confidence             011123344566778888999999888 5555542111110 12221  12334555556788887766555554443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=85.99  E-value=8.9  Score=44.38  Aligned_cols=105  Identities=18%  Similarity=0.042  Sum_probs=74.4

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA  502 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~  502 (858)
                      .+..++.-..+++..|+..+|..|..+..+.......+-.+..+.|..-+.+..+.||.+|+.||..+-.++..-    +
T Consensus        86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de----e  161 (892)
T KOG2025|consen   86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE----E  161 (892)
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----c
Confidence            455566667889999999999999997764443333444566777777777888999999999999997522110    2


Q ss_pred             cCChHHHHHhhcCCCccHHHHHHHHHHHHH
Q 003008          503 EGVVHPLVNTLKNLDISESLMEKTLDILGR  532 (858)
Q Consensus       503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~  532 (858)
                      ..++..+..+++ .+.++++++.+..++.+
T Consensus       162 ~~v~n~l~~liq-nDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  162 CPVVNLLKDLIQ-NDPSDEVRRAALSNISV  190 (892)
T ss_pred             ccHHHHHHHHHh-cCCcHHHHHHHHHhhcc
Confidence            235667777777 55568999887665543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=85.77  E-value=2.8  Score=40.08  Aligned_cols=104  Identities=13%  Similarity=0.083  Sum_probs=75.2

Q ss_pred             HHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHH-HcCcHHHHHHhhc--CCcHHHHHHHHHHHHHhhcChhHHHHHHHcC
Q 003008          429 LILGLEDERAIARAAESIAD-ISINEHMRMLFK-EAGAIKYLVKLLD--HSSDAVRLATTHALERLSVSRGVCQIMEAEG  504 (858)
Q Consensus       429 ~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~-~~g~i~~Lv~LL~--~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g  504 (858)
                      .++..++.+-...+..++.. +-..++....++ ..|.++.+..+..  .++..++..++.+|..-+.+..+|..+.+ .
T Consensus        50 ~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~  128 (157)
T PF11701_consen   50 SLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-N  128 (157)
T ss_dssp             HHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-H
T ss_pred             HHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-H
Confidence            33444444456677778877 446677666666 6888999999998  77899999999999888878887777766 4


Q ss_pred             ChHHHHHhhcCCCccHHHHHHHHHHHHHh
Q 003008          505 VVHPLVNTLKNLDISESLMEKTLDILGRI  533 (858)
Q Consensus       505 ~i~~Li~lL~~~~~~~~~~~~a~~~L~~l  533 (858)
                      +++.|..+++.++++..++..|+.+|..+
T Consensus       129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen  129 YVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             CHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            78999999974443333788888887653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=85.52  E-value=1.1  Score=48.86  Aligned_cols=180  Identities=22%  Similarity=0.103  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc----CchhHHHHHh--cC-cHHH
Q 003008          119 DREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISS----INVYRDLVAE--CG-AIEE  191 (858)
Q Consensus       119 ~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~----~~~~~~~i~~--~g-~i~~  191 (858)
                      ++..|++++.-+..++....+.+. -.++...+...+.+..-..|+.++|++.||+.    +-++-+...+  .| .+..
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~f-v~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~  485 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIF-VADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK  485 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHH-HHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence            455677777777777766555555 36777788888888888889999999999964    1122221111  11 1333


Q ss_pred             HHHHhc-CCCCCHHHHHHHHHHHHHhccCc----chHHHHHhCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHcCCcCchH
Q 003008          192 ITGLLT-RPSLTSEVKEQSMCTLWNLSVDK----KHRLKIANTDILPLLIKSL-EDENMKVKEAAGGVLANLALSKSNHN  265 (858)
Q Consensus       192 Lv~lL~-~~~~~~~~~~~a~~~L~nLs~~~----~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~  265 (858)
                      +.+... ..-++..++..+.++|+|+..--    +.-......|.+..+.... -.+...++=+++-++.||.+++..+.
T Consensus       486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l  565 (728)
T KOG4535|consen  486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL  565 (728)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence            333211 11135678899999999987321    1111112244444443332 23366799999999999999876543


Q ss_pred             H-HHhC-CCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008          266 I-LVEA-GVIPKLAMLLKANVEGSKVIRKEARNALIEL  301 (858)
Q Consensus       266 ~-i~~~-g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl  301 (858)
                      + ..-+ .+.+.|..++.+..+ .+ +|..|+.+|.--
T Consensus       566 q~~~wA~~~F~~L~~Lv~~~~N-FK-VRi~AA~aL~vp  601 (728)
T KOG4535|consen  566 QTAPWASQAFNALTSLVTSCKN-FK-VRIRAAAALSVP  601 (728)
T ss_pred             cCCCchHHHHHHHHHHHHHhcc-ce-EeehhhhhhcCC
Confidence            2 2222 246777777765432 22 555666665433

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=85.40  E-value=5.3  Score=40.89  Aligned_cols=144  Identities=15%  Similarity=0.085  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCc-----HHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHH
Q 003008          439 IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSS-----DAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVN  511 (858)
Q Consensus       439 ~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~-----~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~  511 (858)
                      ..+|...+..++.+++.|..+.++...-.|..+|+..+     +.+|-.+.+.++.|.+  +++....+.+.+.+|..+.
T Consensus        67 VcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr  146 (262)
T PF04078_consen   67 VCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR  146 (262)
T ss_dssp             HHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence            34555555557889999999999999888888886543     5688899999999998  6788889999999999999


Q ss_pred             hhcCCCccHHHHHHHHHHHHHhcCCCccccccccccc--------CcCcHHHH-HhhcCCChhHHHHHH-HHHHhhcccc
Q 003008          512 TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP--------VNGSEKGL-DAAESLDPSIELTGN-VIEAAVSETT  581 (858)
Q Consensus       512 lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~--------~~~i~~Li-~ll~s~d~~v~~~a~-~l~~L~~~~~  581 (858)
                      .+..++  +..|..|+-++..+..   +...-.++..        ...+...+ .+...+++.+.+..+ |...|+.+..
T Consensus       147 ~me~Gs--elSKtvAtfIlqKIL~---dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  147 IMEFGS--ELSKTVATFILQKILL---DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHHHS---HHHHHHHHHHHHHHHH---SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             HHHhcc--HHHHHHHHHHHHHHHc---chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            998665  6666677777666544   1110000000        11222222 334456677777777 7777777777


Q ss_pred             chhhhHh
Q 003008          582 TSYGKVL  588 (858)
Q Consensus       582 ~~~~~i~  588 (858)
                      .+ ..+.
T Consensus       222 ar-~aL~  227 (262)
T PF04078_consen  222 AR-EALR  227 (262)
T ss_dssp             HH-HHHH
T ss_pred             HH-HHHH
Confidence            66 5554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=85.08  E-value=3.8  Score=39.09  Aligned_cols=144  Identities=18%  Similarity=0.155  Sum_probs=90.1

Q ss_pred             HHHHHHHHc--cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHH
Q 003008          148 INLTVNLLR--SESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRL  224 (858)
Q Consensus       148 i~~Li~lL~--~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~  224 (858)
                      ++.++..|.  ...+++|..+.-++..+-  +..+....+. .-+.+-.++..+  +.+....+..++..|- ..++...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~-~~~~i~~~~~~~--~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEK-ISDFIESLLDEG--EMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHCCH--HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHH-HHHHHHHHHccc--cchhHHHHHHHHHHHhCCCHHHHH
Confidence            344555554  346677877877777762  3233333221 123333355554  3335555677777764 4455444


Q ss_pred             HHH-hCCCHHHHHHHHc--cCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHH-HHHHHHHHHH
Q 003008          225 KIA-NTDILPLLIKSLE--DENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKV-IRKEARNALI  299 (858)
Q Consensus       225 ~i~-~~g~i~~Lv~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~-~~~~a~~aL~  299 (858)
                      .+. ..|.++.++.++.  ..+..++..++++|..-|.+..+|..+.+ .++++|-++++...+  +. ++..|+-+|+
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~--~~~ir~~A~v~L~  155 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKD--DSEIRVLAAVGLC  155 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC---HH-CHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccc--hHHHHHHHHHHHh
Confidence            444 8899999999998  67888999999999888888888877776 557899999865432  22 4455555554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=84.68  E-value=50  Score=36.53  Aligned_cols=96  Identities=16%  Similarity=0.142  Sum_probs=75.0

Q ss_pred             CCCHHHHHHHHccC---CHHHHHHHHHHHHHHcCCcC-chHHHHhCCCHHHHHHHHc-cCCCCCHHHHHHHHHHHHHHhc
Q 003008          229 TDILPLLIKSLEDE---NMKVKEAAGGVLANLALSKS-NHNILVEAGVIPKLAMLLK-ANVEGSKVIRKEARNALIELAK  303 (858)
Q Consensus       229 ~g~i~~Lv~ll~~~---~~~~~~~a~~~L~nL~~~~~-~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~~~a~~aL~nl~~  303 (858)
                      ...+..|-..++..   .+.+...|+.++..+-.++. +-..+.++|.++.+++.+. .+...+..+-...-.+|..+|-
T Consensus       105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL  184 (379)
T PF06025_consen  105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL  184 (379)
T ss_pred             hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence            33455566666655   57899999999999988754 4447888999999999887 5554455566677788999999


Q ss_pred             ChhhHHHHHHcCCccccccccc
Q 003008          304 DDYYRILIIEEGLVPVPMVGAD  325 (858)
Q Consensus       304 ~~~~~~~i~~~g~v~~~Lv~ll  325 (858)
                      |....+.+.+.+.+.. +++++
T Consensus       185 N~~Gl~~~~~~~~l~~-~f~if  205 (379)
T PF06025_consen  185 NNRGLEKVKSSNPLDK-LFEIF  205 (379)
T ss_pred             CHHHHHHHHhcChHHH-HHHHh
Confidence            9999999999999995 88874

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.01  E-value=5  Score=47.07  Aligned_cols=174  Identities=16%  Similarity=0.113  Sum_probs=120.4

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-hH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YR  180 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~~  180 (858)
                      ..++.+.+.+..+....-...++.++.|+++.+++.+.+++ +.-+++.+-.++..+++..+..++..+.||..++. +.
T Consensus       541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~-ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e  619 (748)
T KOG4151|consen  541 EVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKIL-KEKALGKIEELMTEENPALQRAALESIINLLWSPLLYE  619 (748)
T ss_pred             hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHH-HHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHH
Confidence            34455555554122223346789999999998887777877 46666777777888899999999999999998875 77


Q ss_pred             HHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-chHH-HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008          181 DLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRL-KIANTDILPLLIKSLEDENMKVKEAAGGVLANL  257 (858)
Q Consensus       181 ~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL  257 (858)
                      ..+++ ...++.....+...  +..+...+++++.-+.... .++. ......+...++.++.+++.+++-..+....|+
T Consensus       620 ~si~e~~~~l~~w~~~~e~~--~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~  697 (748)
T KOG4151|consen  620 RSIVEYKDRLKLWNLNLEVA--DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL  697 (748)
T ss_pred             HHhhccccCchHHHHHHHhh--hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence            77777 56677777777665  7778888888888555443 3444 333566788899999999999998888888875


Q ss_pred             cCCc-CchHHHHhCCCHHHHHH
Q 003008          258 ALSK-SNHNILVEAGVIPKLAM  278 (858)
Q Consensus       258 ~~~~-~~~~~i~~~g~i~~Lv~  278 (858)
                      .... +....+.+...++.+..
T Consensus       698 ~~~~~ei~~~~~~~~~~~~l~~  719 (748)
T KOG4151|consen  698 FEALFEIAEKIFETEVMELLSG  719 (748)
T ss_pred             HHHHHHHHHHhccchHHHHHHH
Confidence            4332 22223444444444443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=83.92  E-value=68  Score=35.32  Aligned_cols=92  Identities=15%  Similarity=0.163  Sum_probs=59.5

Q ss_pred             HHHHHHhhc-CCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHH-hcCCCccccc
Q 003008          465 IKYLVKLLD-HSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGR-ILDPSKEMKS  542 (858)
Q Consensus       465 i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~~  542 (858)
                      |..+..=+. +....+|+.++.-|+.-+.+++.|..+..+|.+..++..+.+..+++ .-..++.++.. ++.   +...
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~-~~~l~~a~i~~~l~~---d~~~   98 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDD-ILALATAAILYVLSR---DGLN   98 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchH-HHHHHHHHHHHHHcc---CCcc
Confidence            555555555 34578899998888888889999999999999999999997544333 44444445444 443   2222


Q ss_pred             ccccccCcCcHHHHHhhc
Q 003008          543 KFYDIPVNGSEKGLDAAE  560 (858)
Q Consensus       543 ~~~i~~~~~i~~Li~ll~  560 (858)
                      ...+........++.++.
T Consensus        99 ~~l~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen   99 MHLLLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhhhhchhHHHHHHHHhc
Confidence            222223334445567766

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=83.71  E-value=2.7  Score=42.21  Aligned_cols=80  Identities=21%  Similarity=0.183  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCc-------HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch--HHHHHhCCCH
Q 003008          162 ACEAAAGLLRSISSINVYRDLVAECGA-------IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH--RLKIANTDIL  232 (858)
Q Consensus       162 ~~~~a~~aL~nLs~~~~~~~~i~~~g~-------i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i  232 (858)
                      -|+.|+.+|+.|+..+.|.+.+...+-       +..|++++... +++..++.|..+|.||+..++.  +..-.+.++|
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~-e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMR-EDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            477799999999998888887766553       45566677665 4889999999999999977754  3444488999


Q ss_pred             HHHHHHHccC
Q 003008          233 PLLIKSLEDE  242 (858)
Q Consensus       233 ~~Lv~ll~~~  242 (858)
                      ..|+..+...
T Consensus       219 ~~Li~FiE~a  228 (257)
T PF12031_consen  219 SHLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999998665

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=83.66  E-value=73  Score=34.82  Aligned_cols=142  Identities=19%  Similarity=0.084  Sum_probs=81.4

Q ss_pred             chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc----------cCCHHH
Q 003008          177 NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE----------DENMKV  246 (858)
Q Consensus       177 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~----------~~~~~~  246 (858)
                      .++|..+.     ..+++.|..+. -+..+..++.++.-||.+...-..+....-+..|+.+-+          ..+..+
T Consensus        40 ~d~r~eL~-----e~i~~Vle~~~-p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~v  113 (532)
T KOG4464|consen   40 SDDRKELG-----ERIFEVLENGE-PLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHV  113 (532)
T ss_pred             hhhHHHHH-----HHHHHHHhcCC-CchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHH
Confidence            34455543     45666666651 234556678888888876554333332222344444421          124578


Q ss_pred             HHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHccCCC--CCHHHHHHHHHHHHHHhc-ChhhHHH-HHHcCCccccc
Q 003008          247 KEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLKANVE--GSKVIRKEARNALIELAK-DDYYRIL-IIEEGLVPVPM  321 (858)
Q Consensus       247 ~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~~a~~aL~nl~~-~~~~~~~-i~~~g~v~~~L  321 (858)
                      ...+.++|.|+..+. ..|....+......+.+.+...-+  ....++-.=.+.|.-+.. .++.|.+ +.+.+|++ ++
T Consensus       114 i~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~-~l  192 (532)
T KOG4464|consen  114 IMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE-LL  192 (532)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH-HH
Confidence            899999999999875 455566666666566654422111  011123344556666665 5566655 57789999 58


Q ss_pred             cccc
Q 003008          322 VGAD  325 (858)
Q Consensus       322 v~ll  325 (858)
                      .+++
T Consensus       193 t~~l  196 (532)
T KOG4464|consen  193 TNWL  196 (532)
T ss_pred             HHHh
Confidence            8875

>PRK14707 hypothetical protein; Provisional

Probab=83.54  E-value=1.7e+02  Score=39.06  Aligned_cols=352  Identities=16%  Similarity=0.067  Sum_probs=171.8

Q ss_pred             cHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHH-HhcCCCCCHHHHHHHHHHHHHhccCcchH
Q 003008          147 CINLTVNLLRS--ESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITG-LLTRPSLTSEVKEQSMCTLWNLSVDKKHR  223 (858)
Q Consensus       147 ~i~~Li~lL~~--~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs~~~~~~  223 (858)
                      -+..+++-.+.  ++..++..+...-..++..+..+..+-.. +|..++. +-+.+ +++..+..+...-..|+..+..+
T Consensus       164 ~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~q-~ia~~lNa~sKWp-~~~~c~~aa~~la~~l~~~~~l~  241 (2710)
T PRK14707        164 NISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAMDAQ-GVATVLNALCKWP-DTPDCGNAVSALAERLADESRLR  241 (2710)
T ss_pred             cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhcccchH-HHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCcHHHH
Confidence            35555555543  35555554444445555655555555334 4555555 44454 35555544443334455555555


Q ss_pred             HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHH-HHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 003008          224 LKIANTDILPLLIKSLEDENMKVKEAAGGVLA-NLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELA  302 (858)
Q Consensus       224 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~-nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~  302 (858)
                      ..+-.+|.-..|-.+-+=++......++..|. .++....-+..+-. ..+...+.-|+.-.+ .+..+..+...-..|.
T Consensus       242 ~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwpd-~~vc~~Aa~~la~rl~  319 (2710)
T PRK14707        242 NELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDP-INVTQALNALSKWAD-LPVCAEAAIALAERLA  319 (2710)
T ss_pred             HhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCCC-chHHHHHHHHHHHHHh
Confidence            55555554445544444455555555555554 33333333333221 112222222221111 2222222322223333


Q ss_pred             cChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhh
Q 003008          303 KDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAM  382 (858)
Q Consensus       303 ~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~l  382 (858)
                      .+++.++.                                          ...+.+..+|-.|+.-+++..+.++++ .+
T Consensus       320 ~d~~l~~~------------------------------------------~~~~~~~~~LNalsKWpd~~~C~~Aa~-~L  356 (2710)
T PRK14707        320 DDPELCKA------------------------------------------LNARGLSTALNALSKWPDNPVCAAAVS-AL  356 (2710)
T ss_pred             ccHhhhhc------------------------------------------cchHHHHHHHHHhhcCCCchhHHHHHH-HH
Confidence            33331111                                          122234445555666665555444432 11


Q ss_pred             hhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHH
Q 003008          383 VGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKE  461 (858)
Q Consensus       383 i~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~  461 (858)
                      ..        +...             .+. ..+.+...++-..|-.+-+-++..+-..|+.+|.. +..+++.++.+-.
T Consensus       357 A~--------rl~~-------------d~~-l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~  414 (2710)
T PRK14707        357 AE--------RLVA-------------DPE-LRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP  414 (2710)
T ss_pred             HH--------Hhcc-------------CHh-hhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch
Confidence            11        1110             000 01222223344455566677899999999999999 7888888888776


Q ss_pred             cCcHHHHHHhhcCCcHHHHHHHHHHHHH-hhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc
Q 003008          462 AGAIKYLVKLLDHSSDAVRLATTHALER-LSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM  540 (858)
Q Consensus       462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~  540 (858)
                      .|.-..|-.|.+=++..+-..++.+|.. ++.+.+.++.+--.++...|-.+-+ -.+++.....+......|..   +.
T Consensus       415 Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSK-WPd~p~c~~aa~~La~~l~~---~~  490 (2710)
T PRK14707        415 QGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSK-WPDTPICGQTASALAARLAH---ER  490 (2710)
T ss_pred             hhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhcc---cH
Confidence            6655555556666676666666666654 4557888877766664444444444 33345555544444555665   33


Q ss_pred             ccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008          541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGN  571 (858)
Q Consensus       541 ~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~  571 (858)
                      .....+.+.+....|-.|-+-+|......++
T Consensus       491 ~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~  521 (2710)
T PRK14707        491 RLRKALKPQEVVIALHSLSKWPDTPICAEAA  521 (2710)
T ss_pred             HHHhhcCHHHHHHHHHHhhcCCCcHHHHHHH
Confidence            3332333333333344444445555444444

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=82.76  E-value=31  Score=36.80  Aligned_cols=163  Identities=19%  Similarity=0.212  Sum_probs=102.8

Q ss_pred             CcHHHHH-HHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cch
Q 003008          146 GCINLTV-NLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKH  222 (858)
Q Consensus       146 g~i~~Li-~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~  222 (858)
                      +.+..|+ ..+++.++.+|+.++.+|+-.+.-+.   .+.. ..++.+...++.+  ++.++..|+.++.-+...  .+.
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKD--DEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCchh
Confidence            5555555 67788999999999999998877543   1111 1367788877666  899999999999987531  111


Q ss_pred             HH-------HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHH-HccCCCCCHHHHHHH
Q 003008          223 RL-------KIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAML-LKANVEGSKVIRKEA  294 (858)
Q Consensus       223 ~~-------~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~~~~~~~~a  294 (858)
                      -.       .......++.+.+.+.+.+++++..++..++.|-..+....   ....+..|+-+ +...+.+.+.+++.-
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence            11       12234567778888888899999999999999866543322   12333444443 333333334455444


Q ss_pred             HHHHHHHhcC-hhhHHHHHHcCCcc
Q 003008          295 RNALIELAKD-DYYRILIIEEGLVP  318 (858)
Q Consensus       295 ~~aL~nl~~~-~~~~~~i~~~g~v~  318 (858)
                      .-.+-..|.. +.++ ..+..+.++
T Consensus       177 ~~Ffp~y~~s~~~~Q-~~l~~~f~~  200 (298)
T PF12719_consen  177 SVFFPVYASSSPENQ-ERLAEAFLP  200 (298)
T ss_pred             HHHHHHHHcCCHHHH-HHHHHHHHH
Confidence            4445556664 4454 455555555

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=82.60  E-value=14  Score=36.34  Aligned_cols=111  Identities=20%  Similarity=0.237  Sum_probs=74.9

Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHH-hhcCc-hhHHHHHhcCcHHHHHHHhcCCC-------CCHHHHHHHHHHHHHh
Q 003008          146 GCINLTVNLLRSESSAACEAAAGLLRS-ISSIN-VYRDLVAECGAIEEITGLLTRPS-------LTSEVKEQSMCTLWNL  216 (858)
Q Consensus       146 g~i~~Li~lL~~~~~~~~~~a~~aL~n-Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~-------~~~~~~~~a~~~L~nL  216 (858)
                      .....+++.+.+......  .+..|.. |-..+ ..-..+++.||+..|+++|..-.       .+......++.+|..+
T Consensus        66 ~~p~~~i~~L~~~~~~~~--~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTSK--ILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HHH--HHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccHH--HHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            345566777766644321  1111211 11222 45666778899999998776321       2457788899999999


Q ss_pred             ccCcchHHHHH-hCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008          217 SVDKKHRLKIA-NTDILPLLIKSLEDENMKVKEAAGGVLANLA  258 (858)
Q Consensus       217 s~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~  258 (858)
                      ..+..+...+. ..+++..|+..|.+++..++..++..|..+|
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            98887766666 6889999999999999999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=82.50  E-value=11  Score=43.79  Aligned_cols=87  Identities=17%  Similarity=0.069  Sum_probs=53.1

Q ss_pred             ccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHH
Q 003008          156 RSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLL  235 (858)
Q Consensus       156 ~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L  235 (858)
                      ++.++++|+.|+.+|+.+...++.        ..|..|++|... -|+-++..++.+|+-.|.+..++..+   ..+++|
T Consensus       565 sD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi---~lLepl  632 (929)
T KOG2062|consen  565 SDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAI---NLLEPL  632 (929)
T ss_pred             cccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHH---HHHhhh
Confidence            455777777777777776654432        256667766543 27888888888888877777666655   122222


Q ss_pred             HHHHccCCHHHHHHHHHHHHHH
Q 003008          236 IKSLEDENMKVKEAAGGVLANL  257 (858)
Q Consensus       236 v~ll~~~~~~~~~~a~~~L~nL  257 (858)
                         .+.+..-+|.-|+-++.-+
T Consensus       633 ---~~D~~~fVRQgAlIa~amI  651 (929)
T KOG2062|consen  633 ---TSDPVDFVRQGALIALAMI  651 (929)
T ss_pred             ---hcChHHHHHHHHHHHHHHH
Confidence               3333444666666666554

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=82.07  E-value=18  Score=40.06  Aligned_cols=128  Identities=9%  Similarity=0.122  Sum_probs=91.4

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcccCCc---ccHHHHHHhcCcHHHHHHHHccC-------CHHHHHHHHHHHHHhhcC
Q 003008          107 FVQMLGLDYDPLDREQAVEALWKYSLGGK---KCIDYIMQFSGCINLTVNLLRSE-------SSAACEAAAGLLRSISSI  176 (858)
Q Consensus       107 lv~lL~~s~d~~~~~~a~~~L~~la~~~~---~~~~~ii~~~g~i~~Li~lL~~~-------~~~~~~~a~~aL~nLs~~  176 (858)
                      +..+++ ......|..|+....++..+.+   ..++.+. +.-+.+-+-+++++.       +.-.+..+...|.-.+..
T Consensus        16 ~~~L~~-~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vf-eAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   16 CLKLLK-GKRDEERFAALLLVTKFVKNDDIVALNKKLVF-EAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             HHHHhc-ccChHHHHHHHHHHHHHhcccchhhhhhhhHH-HHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            667776 4433567777777777766443   1233466 677778888888654       233455577777777777


Q ss_pred             ch--hHHHHHhcCcHHHHHHHhcCCCCCHH------HHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHH
Q 003008          177 NV--YRDLVAECGAIEEITGLLTRPSLTSE------VKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSL  239 (858)
Q Consensus       177 ~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~------~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll  239 (858)
                      ++  ....|++  .||.|.+.+.... |+.      +.+.+-.+|+..+..+.....+...|+++.+.++-
T Consensus        94 pElAsh~~~v~--~IP~llev~~~~~-d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y  161 (698)
T KOG2611|consen   94 PELASHEEMVS--RIPLLLEVMSKGI-DTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMY  161 (698)
T ss_pred             hhhccCHHHHH--hhhHHHHHHHhcC-CCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHH
Confidence            65  4445554  4999999988763 333      78889999999999999999999999999998773

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=82.04  E-value=5.3  Score=39.28  Aligned_cols=111  Identities=12%  Similarity=0.106  Sum_probs=74.2

Q ss_pred             CCcHHHHHHHhcCCCCHH-HHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc---------CCHHHHHHHHHHH
Q 003008          101 DSYVALFVQMLGLDYDPL-DREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS---------ESSAACEAAAGLL  170 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~-~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~---------~~~~~~~~a~~aL  170 (858)
                      ......+++.|. +.... .....+.+...-  .+..=.+.++ +.||+..|+..|..         .+......++.+|
T Consensus        65 ~~~p~~~i~~L~-~~~~~~~~L~~L~v~Lrt--~~~~Wv~~Fl-~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl  140 (187)
T PF06371_consen   65 KSSPEWYIKKLK-SRPSTSKILKSLRVSLRT--NPISWVQEFL-ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL  140 (187)
T ss_dssp             CHHHHHHHHHHT-TT--HHHHHHHHHHHHHH--S-HHHHHHH--HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHH-ccCccHHHHHHHHHHhcc--CCchHHHHhc-cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence            445566888776 43322 222233222221  1212134566 68999999999843         2456777799999


Q ss_pred             HHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc
Q 003008          171 RSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS  217 (858)
Q Consensus       171 ~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs  217 (858)
                      +.|..+......+.. .+++..++..|.++  ++.++..++.+|..+|
T Consensus       141 kal~n~~~G~~~v~~~~~~v~~i~~~L~s~--~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  141 KALMNTKYGLEAVLSHPDSVNLIALSLDSP--NIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHTSSHHHHHHHHCSSSHHHHHHHT--TT--SHHHHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHcCcHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence            999888877777777 88999999999988  9999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.88  E-value=8.2  Score=47.25  Aligned_cols=142  Identities=15%  Similarity=0.126  Sum_probs=103.3

Q ss_pred             CcHHHHHHhhc----CCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCC
Q 003008          463 GAIKYLVKLLD----HSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPS  537 (858)
Q Consensus       463 g~i~~Lv~LL~----~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~  537 (858)
                      ...|.++.+++    ..+++++.+|.-||+.+.. +.+.+..     .+|.|+..+.. +.++.+|.++..+++.++.  
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimek-sp~p~IRsN~VvalgDlav--  990 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEK-SPSPRIRSNLVVALGDLAV--  990 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhc-CCCceeeecchheccchhh--
Confidence            35666777774    4579999999999999976 5554433     57889998873 3347888888888888775  


Q ss_pred             cccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHH
Q 003008          538 KEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILE  616 (858)
Q Consensus       538 ~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~  616 (858)
                       .+.+-.    .-.-+.|...|.+++++++++|. .+.+|+....     |.-.|-++-+...+.++++.|...|-..+.
T Consensus       991 -~fpnli----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen  991 -RFPNLI----EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred             -hccccc----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence             222110    12345677888899999999999 9999876543     223578888999999999999888886666


Q ss_pred             HhhcCC
Q 003008          617 FITIID  622 (858)
Q Consensus       617 ~l~~~~  622 (858)
                      -|+...
T Consensus      1061 Els~k~ 1066 (1251)
T KOG0414|consen 1061 ELSSKG 1066 (1251)
T ss_pred             Hhhhcc
Confidence            665543

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.52  E-value=7.5  Score=47.56  Aligned_cols=130  Identities=15%  Similarity=0.103  Sum_probs=94.1

Q ss_pred             cHHHHHHHhC----CCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhc-Chh
Q 003008          423 GVARLVLILG----LEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSV-SRG  495 (858)
Q Consensus       423 ~i~~Lv~lL~----~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~-~~~  495 (858)
                      ..|-++...+    ..++++|..|.-+|+. ++.+.+.+     ....|.|+..+. ++++.+|.+++.+++-++- .+.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            4555666663    3689999999999999 55555544     456899999887 8889999999999999986 333


Q ss_pred             HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008          496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN  571 (858)
Q Consensus       496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~  571 (858)
                      ..+.     .-+.|..-|++.  +..+|+.|...|.+|-..+       .+--.|-+.....++.+++++++--|-
T Consensus       995 lie~-----~T~~Ly~rL~D~--~~~vRkta~lvlshLILnd-------miKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen  995 LIEP-----WTEHLYRRLRDE--SPSVRKTALLVLSHLILND-------MIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred             ccch-----hhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhh-------hhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence            2111     234566667744  4999999999999987622       233356677788888888888766554

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=80.47  E-value=40  Score=36.57  Aligned_cols=200  Identities=16%  Similarity=0.205  Sum_probs=139.0

Q ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCccc-----HHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008           99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKC-----IDYIMQF-SGCINLTVNLLRSESSAACEAAAGLLRS  172 (858)
Q Consensus        99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~-----~~~ii~~-~g~i~~Li~lL~~~~~~~~~~a~~aL~n  172 (858)
                      ...+.+..|+..|. .-+.+.|..++....++-....+.     .+.+... ...+..|+.--.  ++++...+-..|+.
T Consensus        73 ~~~dll~~Li~~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRe  149 (335)
T PF08569_consen   73 YRSDLLYLLIRNLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHTHHHHHHHTGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHH
Confidence            45678888888886 667788888888877776543222     2233322 223333333222  56677778888999


Q ss_pred             hhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHh-ccCcchHHHHHhC---CCHHHHHHHHccCCHHHHH
Q 003008          173 ISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNL-SVDKKHRLKIANT---DILPLLIKSLEDENMKVKE  248 (858)
Q Consensus       173 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nL-s~~~~~~~~i~~~---g~i~~Lv~ll~~~~~~~~~  248 (858)
                      ....+...+.+.....+..+.+....+  +=++.-.|..++..+ ..++..-......   ..+....++|.+++--.+.
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~--~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr  227 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLP--NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR  227 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCC--ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence            998888788888888899999999988  888998999999885 5666554444433   3455778889999999999


Q ss_pred             HHHHHHHHHcCCcCchHHH---Hh-CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChh
Q 003008          249 AAGGVLANLALSKSNHNIL---VE-AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY  306 (858)
Q Consensus       249 ~a~~~L~nL~~~~~~~~~i---~~-~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~  306 (858)
                      +++..|..|-.+..+...+   +. ..-+..++.+|++.   ++.+|-.|-.+.--...+|.
T Consensus       228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~---sk~Iq~eAFhvFKvFVANp~  286 (335)
T PF08569_consen  228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK---SKNIQFEAFHVFKVFVANPN  286 (335)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHH-SS
T ss_pred             hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc---chhhhHHHHHHHHHHHhCCC
Confidence            9999999999888776643   22 23477777788764   67799999988888877754

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=80.28  E-value=1.1e+02  Score=34.51  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             hhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHh-cCCchHHHHHhhcCChHHHHHHHHHHHhhhcCc
Q 003008          744 LYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVAS-EGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDS  820 (858)
Q Consensus       744 ~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~  820 (858)
                      -...+|.|++-.+..+.+.+.....||+++...-+. .. .+-+ ...+|.|++.|+.++.+++..++.+|..+..+.
T Consensus       321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~-~v-l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK-SV-LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH-HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            345688999888877777999999999998764432 22 2222 345677789999999999999999999988775

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=80.14  E-value=4.1  Score=46.70  Aligned_cols=68  Identities=19%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSIS  174 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs  174 (858)
                      ...++..+++|+. +.|..+|.+|++.|-.++.++....      ..++..|+++|.++++.....+-.+|..|-
T Consensus        57 ~~~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v------~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll  124 (556)
T PF05918_consen   57 QEEAINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHV------SKVADVLVQLLQTDDPVELDAVKNSLMSLL  124 (556)
T ss_dssp             HHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-H------HHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHH------hHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            4556666777776 6677777777777777776544322      234466677777666655555555555553

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	858
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		3e-05
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		3e-05
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		5e-05
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		5e-05
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		5e-05
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		5e-05
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		5e-05
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		5e-05
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		5e-05
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		5e-05
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		5e-05
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		5e-05
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		5e-05
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		6e-05
3bct_A	470	The Armadillo Repeat Region From Murine Beta-Cateni		3e-04

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQDAEMAQNAVR 485
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 486 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 545
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI--RGLNTIPL 597

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 349
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 350 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 409
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 461

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 298 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 356
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 357 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 416
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 417 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 468

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 279 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 337
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 338 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 397
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 398 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 449

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 297 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 355
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 356 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 415
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 416 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 467

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 296 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 354
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 355 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 414
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 415 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 466

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 295 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 353
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 354 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 413
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 414 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 465

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 296 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 354
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 355 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 414
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 415 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 466

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 292 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 350
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 351 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 410
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 411 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 462

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 352
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 464

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 279 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 337
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 338 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 397
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 398 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 449

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 281 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 339
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 340 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 399
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 400 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 451

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 283 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 341
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 342 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 401
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 402 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 453

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++  +V + G IE +   + R     ++ E ++C L +L+  +    ++A   + 
Sbjct: 292 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 350
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 351 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 410
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG ++  I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 411 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 462

>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 470

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
           + N Y++   V + G IE +   + R     ++ E ++C L +L+  +    + A   + 
Sbjct: 236 TCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEXAQNAVR 294
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
               LP+++K L    +  + +A  G++ NLAL  +NH  L E G IP+L  LL      
Sbjct: 295 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 354
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
                      +  VEG +   I +    AL  LA+D + RI+I   GL  +P+
Sbjct: 355 TQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 406

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	858
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-39
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-30
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-24
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-24
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-22
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-17
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-17
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-14
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-38
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-24
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-24
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-18
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-17
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-15
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-15
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-36
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-25
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-25
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-23
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-22
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-19
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-16
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-15
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-10
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-27
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-20
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-19
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-18
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-11
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-09
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-09
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-26
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-23
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-19
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-11
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-10
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-10
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-09
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-06
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-05
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-24
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-20
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-10
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-10
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-06
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-05
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-05
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-05
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-23
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-18
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-14
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-13
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-12
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-22
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	9e-18
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-09
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-09
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-11
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-11
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-21
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-19
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-18
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-16
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-12
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-08
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-21
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-19
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-19
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-12
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-09
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-12
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-17
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-14
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-12
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-09
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-13
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-04
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	8e-07
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-04
3grl_A	651	General vesicular transport factor P115; vesicle t	7e-04

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  151 bits (382), Expect = 9e-39
 Identities = 69/451 (15%), Positives = 151/451 (33%), Gaps = 46/451 (10%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   V+MLG          A+  L    L  +     +   +G +   V LL   +    
Sbjct: 103 IPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFL 160

Query: 164 EAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
                 L+ ++  N   + ++   G  + +  ++   +   ++   +   L  LSV   +
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSN 219

Query: 223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKA 282
           +  I     +  L   L D + ++ +     L N  LS +        G++  L  LL +
Sbjct: 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN--LSDAATKQEGMEGLLGTLVQLLGS 277

Query: 283 NVEGSKVIRKEARNALIELAKDDY-YRILIIEEGLVPVPMVGADAYKSFRPELHSWPSL- 340
                  +   A   L  L  ++Y  ++++ + G +   +V        R ++       
Sbjct: 278 ---DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE-ALVRTVLRAGDREDITEPAICA 333

Query: 341 -----PDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM----NAMVGRSRQHFL 391
                    E E             +++ L     +  + +A +    N  +  +    L
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 393

Query: 392 VRIGAIE---------SEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARA 442
              GAI           +D ++  S               G  +   + G+  E  +   
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTS--------------MGGTQQQFVEGVRMEEIVEGC 439

Query: 443 AESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502
             ++  ++ + H R++ +    I   V+LL    + ++      L  L+  +   + +EA
Sbjct: 440 TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 499

Query: 503 EGVVHPLVNTLKNLDISESLMEKTLDILGRI 533
           EG   PL   L + +  E +      +L R+
Sbjct: 500 EGATAPLTELLHSRN--EGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  123 bits (311), Expect = 9e-30
 Identities = 69/405 (17%), Positives = 145/405 (35%), Gaps = 37/405 (9%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   V +L             + L   + G ++    I+  SG     VN++R+ +    
Sbjct: 145 LQKMVALLNKTNVKF-LAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKL 202

Query: 164 -EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
               + +L+ +S  +  +  + E G ++ +   LT PS    + +  + TL NLS     
Sbjct: 203 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS--QRLVQNCLWTLRNLSDAATK 260

Query: 223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLLK 281
           +  +    +L  L++ L  +++ V   A G+L+NL   +  N  ++ + G I  L   + 
Sbjct: 261 QEGMEG--LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 282 ANVEGSKVIRKEARNALIELA----KDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSW 337
                 + I + A  AL  L     + +  +  +     +P  +V      S  P + + 
Sbjct: 319 RA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP-VVVKLLHPPSHWPLIKAT 376

Query: 338 PSLPDGTEIERTSQGPS------KFGANELLLGL-----NVSDKNANIDEAKMNAMVGRS 386
             L     I   +  P+      + GA   L+ L       + +  ++   +   + G  
Sbjct: 377 VGL-----IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431

Query: 387 RQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESI 446
            +  +           R   +   I          + +   V +L    E     AA  +
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGL-------NTIPLFVQLLYSPIENIQRVAAGVL 484

Query: 447 ADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLS 491
            +++ ++      +  GA   L +LL   ++ V       L R+S
Sbjct: 485 CELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  107 bits (269), Expect = 2e-24
 Identities = 35/219 (15%), Positives = 81/219 (36%), Gaps = 9/219 (4%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +    ++L  + D +   +A   + + S         IM+    ++  V  +++ +    
Sbjct: 19  IPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHA-IMRSPQMVSAIVRTMQNTNDVET 76

Query: 164 -EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-K 221
               AG L ++S        + + G I  +  +L  P     V   ++ TL NL + +  
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEG 134

Query: 222 HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLL 280
            ++ +     L  ++  L   N+K        L  LA  ++ +  I++ +G    L  ++
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 281 KANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPV 319
           +      + +       L  L+     +  I+E G +  
Sbjct: 195 RTY--TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  106 bits (266), Expect = 4e-24
 Identities = 77/460 (16%), Positives = 159/460 (34%), Gaps = 59/460 (12%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481
           G+  LV +LG   +  +  A  ++ ++ +  E  +M  + AG ++ +V LL+ ++     
Sbjct: 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161

Query: 482 ATTHALERLSVSRGVCQ-IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540
            TT  L+ L+      + I+ A G    LVN ++     E L+  T  +L ++L      
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVL-KVLSVCSSN 219

Query: 541 KSKFYDIPVNGSEKGLDAAESL--DPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIG 598
           K    +        G+ A      DPS  L  N +    + +  +  +      +G ++ 
Sbjct: 220 KPAIVE------AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 273

Query: 599 IMKTSYPDLQRKAASILEFITIIDPS-MDTIISADIESGLDAIFQQKALEDTDSDIEGRQ 657
           ++ +   ++   AA IL  +T  +      +       G++A+ +         D E   
Sbjct: 274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG---GIEALVR---TVLRAGDREDIT 327

Query: 658 PEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWV 717
                   E A  A+     L ++  +++     +   + + ++ K+L            
Sbjct: 328 --------EPAICALR---HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376

Query: 718 AACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEG 777
              +  L+    P           +    AIPRL++ +     + +    +   +     
Sbjct: 377 VGLIRNLAL--CPANH------APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428

Query: 778 VV--------------------DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLS 817
            V                     +   +     I   V+L+             +L  L+
Sbjct: 429 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488

Query: 818 MDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
            D E   AI A GA   L  ++ S+     T A  +L  +
Sbjct: 489 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  102 bits (255), Expect = 1e-22
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 7/176 (3%)

Query: 146 GCINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSE 204
             I     LL  E       AA ++  +S        ++     +  I   +   +   E
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-E 75

Query: 205 VKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH 264
               +  TL NLS  ++  L I  +  +P L+K L      V   A   L NL L +   
Sbjct: 76  TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 265 NILV-EAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD-YYRILIIEEGLVP 318
            + V  AG + K+  LL    + +        + L  LA  +   +++I+  G   
Sbjct: 136 KMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 86.0 bits (213), Expect = 1e-17
 Identities = 66/422 (15%), Positives = 136/422 (32%), Gaps = 86/422 (20%)

Query: 422 DGVARLVLILGLEDERAIAR-AAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVR 480
             V+ +V  +   ++   AR  A ++ ++S +    +   ++G I  LVK+L    D+V 
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 481 LATTHALERLSVSRGVCQIMEAE-GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539
                 L  L + +   ++     G +  +V  L   +     +  T D L  +   ++E
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQE 176

Query: 540 MKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGI 599
            K                 +      + +                              +
Sbjct: 177 SKLIILA------------SGGPQALVNI------------------------------M 194

Query: 600 MKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPE 659
              +Y  L    + +L+ +++   +   I+ A     L        L D    +      
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL-----GLHLTDPSQRL------ 243

Query: 660 KYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAA 719
                ++     +   +   TK                +  L ++L S+   +     A 
Sbjct: 244 -----VQNCLWTLRNLSDAATKQ---------EGMEGLLGTLVQLLGSDDI-NVVTCAAG 288

Query: 720 CLVKLSCLSGPDQDFENPINM-EVTLYEAIPRLIEQIKSFSS--EAREAAVIELNRIISE 776
            L  L+C         N  N   V     I  L+  +       +  E A+  L  + S 
Sbjct: 289 ILSNLTC--------NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340

Query: 777 G--VVDSTRAVASEGGIFPLVKLIEEGSNRAV-EAGLAILYNLSMDSENHSAIIAAGAVP 833
                 +  AV    G+  +VKL+   S+  + +A + ++ NL++   NH+ +   GA+P
Sbjct: 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 400

Query: 834 AL 835
            L
Sbjct: 401 RL 402

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 83.7 bits (207), Expect = 6e-17
 Identities = 64/444 (14%), Positives = 128/444 (28%), Gaps = 88/444 (19%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISINEHM-RMLFKEAGAIKYLVKLLDHSSDA-VR 480
            +  L  +L  ED+  + +AA  +  +S  E     + +    +  +V+ + +++D    
Sbjct: 18  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 481 LATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540
             T   L  LS  R     +   G +  LV  L +    +S++   +  L  +L   +  
Sbjct: 78  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGA 135

Query: 541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIM 600
           K                              V  A                 + +M+ ++
Sbjct: 136 KMA----------------------------VRLAGG---------------LQKMVALL 152

Query: 601 KTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEK 660
             +           L+ +   +     II A    G  A+                    
Sbjct: 153 NKTNVKFLAITTDCLQILAYGNQESKLIILA--SGGPQALVNI----------------- 193

Query: 661 YALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAAC 720
             +        +   +R+L  L         I     ++ L   L               
Sbjct: 194 --MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL-VQNCLWT 250

Query: 721 LVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVD 780
           L  LS              ME      +  L++ + S        A   L   ++     
Sbjct: 251 LRNLS------DAATKQEGME----GLLGTLVQLLGSDDINVVTCAAGIL-SNLTCNNYK 299

Query: 781 STRAVASEGGIFPLVKLIEEGSNRA--VEAGLAILYNLSMDSENH----SAIIAAGAVPA 834
           +   V   GGI  LV+ +    +R    E  +  L +L+   +      +A+     +P 
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359

Query: 835 LRRIVLS--QRPQWTRALRLLRNL 856
           + +++      P     + L+RNL
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNL 383

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 79.8 bits (197), Expect = 1e-15
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 9/150 (6%)

Query: 176 INVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIAN-TDILPL 234
           IN   D      AI E+T LL        V  ++   +  LS  +  R  I     ++  
Sbjct: 6   INYQDDAELATRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 63

Query: 235 LIKSLEDEN-MKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKE 293
           +++++++ N ++      G L NL+  +     + ++G IP L  +L +       +   
Sbjct: 64  IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS---PVDSVLFY 120

Query: 294 ARNALIELAKD-DYYRILIIEEGLVPVPMV 322
           A   L  L    +  ++ +   G +   MV
Sbjct: 121 AITTLHNLLLHQEGAKMAVRLAGGLQ-KMV 149

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 57/425 (13%), Positives = 132/425 (31%), Gaps = 67/425 (15%)

Query: 422 DGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSD-AV 479
            G+ ++V +L   + + +A   + +  ++  N+  +++   +G  + LV ++   +   +
Sbjct: 143 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 202

Query: 480 RLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539
              T+  L+ LSV       +   G +  L   L +    + L++  L  L  + D    
Sbjct: 203 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS--QRLVQNCLWTLRNLSD---- 256

Query: 540 MKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTT-----SYGKVLDSVFIG 594
                       + K       L   ++L G+     V+         +     + + + 
Sbjct: 257 -----------AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305

Query: 595 RMIGI--------MKTSYPDLQRKAASILEFITIIDPSMDTIISADIESG-LDAIFQQKA 645
           ++ GI              D+   A   L  +T      +   +A      L  +   K 
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV--KL 363

Query: 646 LEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKIL 705
           L                  + +A++       L+  L         +     I  L ++L
Sbjct: 364 LHPPSHWP-----------LIKATVG------LIRNLALCPANHAPLREQGAIPRLVQLL 406

Query: 706 KSNVPLHYKDWVAACLVKLSCLSGPDQDF------------ENPINMEVTLYE-AIPRLI 752
                   +        +        ++              +  N  V      IP  +
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV 466

Query: 753 EQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAI 812
           + + S     +  A   L  +  +   ++  A+ +EG   PL +L+   +        A+
Sbjct: 467 QLLYSPIENIQRVAAGVLCELAQDK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524

Query: 813 LYNLS 817
           L+ +S
Sbjct: 525 LFRMS 529

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  152 bits (385), Expect = 1e-38
 Identities = 70/467 (14%), Positives = 155/467 (33%), Gaps = 46/467 (9%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   V+MLG          A+  L    L  +     +   +G +   V LL   +    
Sbjct: 100 IPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFL 157

Query: 164 EAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
                 L+ ++  N   + ++   G  + +  ++   +    +   +   L  LSV   +
Sbjct: 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCSSN 216

Query: 223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKA 282
           +  I     +  L   L D + ++ +     L N  LS +        G++  L  LL +
Sbjct: 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN--LSDAATKQEGMEGLLGTLVQLLGS 274

Query: 283 NVEGSKVIRKEARNALIELAKDDY-YRILIIEEGLVPVPMVGADAYKSFRPELHS----- 336
                  +   A   L  L  ++Y  ++++ + G +   +V        R ++       
Sbjct: 275 ---DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE-ALVRTVLRAGDREDITEPAICA 330

Query: 337 -WPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM----NAMVGRSRQHFL 391
                    E E             +++ L     +  + +A +    N  +  +    L
Sbjct: 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 390

Query: 392 VRIGAIE---------SEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARA 442
              GAI           +D ++  S               G  +   + G+  E  +   
Sbjct: 391 REQGAIPRLVQLLVRAHQDTQRRTS--------------MGGTQQQFVEGVRMEEIVEGC 436

Query: 443 AESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502
             ++  ++ + H R++ +    I   V+LL    + ++      L  L+  +   + +EA
Sbjct: 437 TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 496

Query: 503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPV 549
           EG   PL   L + +  E +      +L R+ +   +   K   + +
Sbjct: 497 EGATAPLTELLHSRN--EGVATYAAAVLFRMSEDKPQDYKKRLSVEL 541

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  108 bits (270), Expect = 2e-24
 Identities = 36/219 (16%), Positives = 81/219 (36%), Gaps = 9/219 (4%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +    ++L  D D +   +A   + + S         IM+    ++  V  +++ +    
Sbjct: 16  IPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHA-IMRSPQMVSAIVRTMQNTNDVET 73

Query: 164 -EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-K 221
               AG L ++S        + + G I  +  +L  P     V   ++ TL NL + +  
Sbjct: 74  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEG 131

Query: 222 HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLL 280
            ++ +     L  ++  L   N+K        L  LA  ++ +  I++ +G    L  ++
Sbjct: 132 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 191

Query: 281 KANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPV 319
           +      + +       L  L+     +  I+E G +  
Sbjct: 192 RTY--TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 228

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  106 bits (265), Expect = 8e-24
 Identities = 80/461 (17%), Positives = 162/461 (35%), Gaps = 61/461 (13%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISIN-EHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481
           G+  LV +LG   +  +  A  ++ ++ ++ E  +M  + AG ++ +V LL+ ++     
Sbjct: 99  GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 158

Query: 482 ATTHALERLSVSRGVCQ-IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540
            TT  L+ L+      + I+ A G    LVN ++     E L+  T  +L ++L      
Sbjct: 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVL-KVLSVCSSN 216

Query: 541 KSKFYDIPVNGSEKGLDAAESL--DPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIG 598
           K    +        G+ A      DPS  L  N +    + +  +  +      +G ++ 
Sbjct: 217 KPAIVE------AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 270

Query: 599 IMKTSYPDLQRKAASILEFITIIDPS-MDTIISADIESGLDAIFQQKALEDTDSDIEGRQ 657
           ++ +   ++   AA IL  +T  +      +       G++A+ +         D E   
Sbjct: 271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG---GIEALVR---TVLRAGDREDIT 324

Query: 658 PEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWV 717
                   E A  A+     L ++  +++     +   + + ++ K+L            
Sbjct: 325 --------EPAICALRH---LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373

Query: 718 AACLVKLSCLSGPDQDFENPINM-EVTLYEAIPRLIEQIKSFSSEAREAAVIEL------ 770
              +  L+           P N   +    AIPRL++ +     + +    +        
Sbjct: 374 VGLIRNLAL---------CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 424

Query: 771 ----NRIISEGVV----------DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816
                  I EG             +   +     I   V+L+             +L  L
Sbjct: 425 EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 484

Query: 817 SMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
           + D E   AI A GA   L  ++ S+     T A  +L  +
Sbjct: 485 AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  100 bits (251), Expect = 4e-22
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 146 GCINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSE 204
             I     LL  E       AA ++  +S        ++     +  I   + + +   E
Sbjct: 14  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM-QNTNDVE 72

Query: 205 VKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH 264
               +  TL NLS  ++  L I  +  +P L+K L      V   A   L NL L +   
Sbjct: 73  TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 132

Query: 265 NILV-EAGVIPKLAMLLKANVEGSKVIRKEARNALIELA-KDDYYRILIIEEGLVP 318
            + V  AG + K+  LL    + +        + L  LA  +   +++I+  G   
Sbjct: 133 KMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 185

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 86.9 bits (215), Expect = 9e-18
 Identities = 64/444 (14%), Positives = 129/444 (29%), Gaps = 88/444 (19%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISINEHM-RMLFKEAGAIKYLVKLLDHSSDA-VR 480
            +  L  +L  ED+  + +AA  +  +S  E     + +    +  +V+ + +++D    
Sbjct: 15  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 481 LATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540
             T   L  LS  R     +   G +  LV  L +    +S++   +  L  +L   +  
Sbjct: 75  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGA 132

Query: 541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIM 600
           K                              V  A                 + +M+ ++
Sbjct: 133 KMA----------------------------VRLAGG---------------LQKMVALL 149

Query: 601 KTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEK 660
             +           L+ +   +     II A    G  A+                    
Sbjct: 150 NKTNVKFLAITTDCLQILAYGNQESKLIILA--SGGPQALVNI----------------- 190

Query: 661 YALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAAC 720
             +        +   +R+L  L         I     ++ L   L           V  C
Sbjct: 191 --MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ----RLVQNC 244

Query: 721 LVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVD 780
           L  L  LS            +  +   +  L++ + S        A   L   ++     
Sbjct: 245 LWTLRNLSDAATK-------QEGMEGLLGTLVQLLGSDDINVVTCAAGIL-SNLTCNNYK 296

Query: 781 STRAVASEGGIFPLVKLIEEGSNR--AVEAGLAILYNLSMDSENHS----AIIAAGAVPA 834
           +   V   GGI  LV+ +    +R    E  +  L +L+   +       A+     +P 
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356

Query: 835 LRRIVLSQRPQWTR--ALRLLRNL 856
           + +++            + L+RNL
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNL 380

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 86.9 bits (215), Expect = 1e-17
 Identities = 65/421 (15%), Positives = 136/421 (32%), Gaps = 86/421 (20%)

Query: 423 GVARLVLILGLEDERAIAR-AAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481
            V+ +V  +   ++   AR  A ++ ++S +    +   ++G I  LVK+L    D+V  
Sbjct: 57  MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLF 116

Query: 482 ATTHALERLSVSRGVCQIMEAE-GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540
                L  L + +   ++     G +  +V  L   +     +  T D L  +   ++E 
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQES 174

Query: 541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIM 600
           K                 +      + +                              + 
Sbjct: 175 KLIILA------------SGGPQALVNI------------------------------MR 192

Query: 601 KTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEK 660
             +Y  L    + +L+ +++   +   I+ A     L        L D    +       
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL-----GLHLTDPSQRL------- 240

Query: 661 YALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAAC 720
               ++     +            S    +       +  L ++L S+   +     A  
Sbjct: 241 ----VQNCLWTLRNL---------SDAATKQEGMEGLLGTLVQLLGSDDI-NVVTCAAGI 286

Query: 721 LVKLSCLSGPDQDFENPINME-VTLYEAIPRLIEQIKSFSS--EAREAAVIELNRIIS-- 775
           L  L+C         N  N   V     I  L+  +       +  E A+  L  + S  
Sbjct: 287 LSNLTC--------NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 338

Query: 776 EGVVDSTRAVASEGGIFPLVKLIEEGSNRAV-EAGLAILYNLSMDSENHSAIIAAGAVPA 834
           +    +  AV    G+  +VKL+   S+  + +A + ++ NL++   NH+ +   GA+P 
Sbjct: 339 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 398

Query: 835 L 835
           L
Sbjct: 399 L 399

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 176 INVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIAN-TDILPL 234
           IN   D      AI E+T LL        V  ++   +  LS  +  R  I     ++  
Sbjct: 3   INYQDDAELATRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 60

Query: 235 LIKSLEDEN-MKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKE 293
           +++++++ N ++      G L NL+  +     + ++G IP L  +L +       +   
Sbjct: 61  IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS---PVDSVLFY 117

Query: 294 ARNALIELAK-DDYYRILIIEEGLVPV 319
           A   L  L    +  ++ +   G +  
Sbjct: 118 AITTLHNLLLHQEGAKMAVRLAGGLQK 144

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 61/465 (13%), Positives = 141/465 (30%), Gaps = 70/465 (15%)

Query: 423 GVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDA-VR 480
           G+ ++V +L   + + +A   + +  ++  N+  +++   +G  + LV ++   +   + 
Sbjct: 141 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 200

Query: 481 LATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540
             T+  L+ LSV       +   G +  L   L +    + L++  L  L  + D     
Sbjct: 201 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS--QRLVQNCLWTLRNLSD----- 253

Query: 541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTT-----SYGKVLDSVFIGR 595
                      + K       L   ++L G+     V+         +     + + + +
Sbjct: 254 ----------AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 303

Query: 596 MIGI--------MKTSYPDLQRKAASILEFITIIDPSMDTIISADIESG-LDAIFQQKAL 646
           + GI              D+   A   L  +T      +   +A      L  + +   L
Sbjct: 304 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK--LL 361

Query: 647 EDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILK 706
                             + +A++       L+  L         +     I  L ++L 
Sbjct: 362 HPPSHWP-----------LIKATVG------LIRNLALCPANHAPLREQGAIPRLVQLLV 404

Query: 707 SNVPLHYKDWVAACLVKLSCLSGPDQDF------------ENPINMEVTLYE-AIPRLIE 753
                  +        +        ++              +  N  V      IP  ++
Sbjct: 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 464

Query: 754 QIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAIL 813
            + S     +  A   L  +  +   ++  A+ +EG   PL +L+   +        A+L
Sbjct: 465 LLYSPIENIQRVAAGVLCELAQDK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522

Query: 814 YNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTR-ALRLLRNLP 857
           + +S D           +V     +  ++   W   A   L    
Sbjct: 523 FRMSEDKPQD--YKKRLSVELTSSLFRTEPMAWNETADLGLDIGA 565

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 780 DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIA-AGAVPALRRI 838
               A  +   I  L KL+ +     V     +++ LS    +  AI+     V A+ R 
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 839 VLSQRPQWTR--ALRLLRNL 856
           + +     T       L NL
Sbjct: 65  MQNTNDVETARCTAGTLHNL 84

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  146 bits (369), Expect = 3e-36
 Identities = 71/463 (15%), Positives = 159/463 (34%), Gaps = 32/463 (6%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   V MLG          A+  L    L  +     +   +G +   V LL   +    
Sbjct: 236 IPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFL 293

Query: 164 EAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
                 L+ ++  N   + ++   G  + +  ++   +   ++   +   L  LSV   +
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSN 352

Query: 223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKA 282
           +  I     +  L   L D + ++ +     L N  LS +        G++  L  LL +
Sbjct: 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN--LSDAATKQEGMEGLLGTLVQLLGS 410

Query: 283 NVEGSKVIRKEARNALIELAKDDY-YRILIIEEGLVPVPMVGADAYKSFRPE-------- 333
                  +   A   L  L  ++Y  ++++ + G +   +V        R +        
Sbjct: 411 ---DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE-ALVRTVLRAGDREDITEPAICA 466

Query: 334 LHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEA----KMNAMVGRSRQH 389
           L    S     E+ + +          +++ L     +  + +A      N  +  +   
Sbjct: 467 LRHLTSRHQDAEMAQNAVRLH--YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 524

Query: 390 FLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADI 449
            L   GAI        ++     R+ ++     G  +   + G+  E  +     ++  +
Sbjct: 525 PLREQGAIPRLVQLLVRAHQDTQRRTSM-----GGTQQQFVEGVRMEEIVEACTGALHIL 579

Query: 450 SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPL 509
           + + H R++ +    I   V+LL    + ++      L  L+  +   + +EAEG   PL
Sbjct: 580 ARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 639

Query: 510 VNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGS 552
              L + +  E +      +L R+ +   +   K   + +  S
Sbjct: 640 TELLHSRN--EGVATYAAAVLFRMSEDKPQDYKKRLSVELTSS 680

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  111 bits (278), Expect = 3e-25
 Identities = 80/461 (17%), Positives = 164/461 (35%), Gaps = 61/461 (13%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISIN-EHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481
           G+  LV +LG   +  +  A  ++ ++ ++ E  +M  + AG ++ +V LL+ ++     
Sbjct: 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 294

Query: 482 ATTHALERLSVSRGVCQIMEAE-GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540
            TT  L+ L+      +++    G    LVN ++     E L+  T  +L ++L      
Sbjct: 295 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVL-KVLSVCSSN 352

Query: 541 KSKFYDIPVNGSEKGLDAAESL--DPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIG 598
           K    +        G+ A      DPS  L  N +    + +  +  +      +G ++ 
Sbjct: 353 KPAIVE------AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 406

Query: 599 IMKTSYPDLQRKAASILEFITIIDPS-MDTIISADIESGLDAIFQQKALEDTDSDIEGRQ 657
           ++ +   ++   AA IL  +T  +      +       G++A+ +         DI    
Sbjct: 407 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG---GIEALVRTVLRAGDREDI---- 459

Query: 658 PEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWV 717
                   E A  A+     L ++  D++     +   + + ++ K+L            
Sbjct: 460 -------TEPAICALRH---LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509

Query: 718 AACLVKLSCLSGPDQDFENPINME-VTLYEAIPRLIEQIKSFSSEA-REAAVIELNRIIS 775
              +  L+           P N   +    AIPRL++ +     +  R  ++    +   
Sbjct: 510 VGLIRNLAL---------CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 560

Query: 776 EGV-------------------VDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816
           EGV                   + +   +     I   V+L+             +L  L
Sbjct: 561 EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620

Query: 817 SMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
           + D E   AI A GA   L  ++ S+     T A  +L  +
Sbjct: 621 AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  110 bits (277), Expect = 4e-25
 Identities = 34/219 (15%), Positives = 82/219 (37%), Gaps = 9/219 (4%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +    ++L  + D +   +A   + + S         IM+    ++  V  +++ +    
Sbjct: 152 IPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHA-IMRSPQMVSAIVRTMQNTNDVET 209

Query: 164 -EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
               +G L ++S        + + G I  +  +L  P     V   ++ TL NL + ++ 
Sbjct: 210 ARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPV--DSVLFHAITTLHNLLLHQEG 267

Query: 223 -RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLL 280
            ++ +     L  ++  L   N+K        L  LA  ++ +  I++ +G    L  ++
Sbjct: 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 327

Query: 281 KANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPV 319
           +      + +       L  L+     +  I+E G +  
Sbjct: 328 RTY--TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 364

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  105 bits (263), Expect = 2e-23
 Identities = 42/219 (19%), Positives = 82/219 (37%), Gaps = 12/219 (5%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           V+  V+ +    D          L   S   ++ +  I + SG I   VN+L S   +  
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFK-SGGIPALVNMLGSPVDSVL 251

Query: 164 EAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKK 221
             A   L ++       +  V   G ++++  LL + +   +    +   L  L+  +++
Sbjct: 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQE 309

Query: 222 HRLKIANTDILPLLIKSLEDENM-KVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL 280
            +L I  +     L+  +      K+      VL  L++  SN   +VEAG +  L + L
Sbjct: 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369

Query: 281 KANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPV 319
                 S+ + +     L  L+     +     EGL+  
Sbjct: 370 TD---PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGT 403

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  100 bits (250), Expect = 7e-22
 Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 146 GCINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSE 204
             I     LL  E       AA ++  +S        ++     +  I   +   +   E
Sbjct: 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVE 208

Query: 205 VKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH 264
               +  TL NLS  ++  L I  +  +P L+  L      V   A   L NL L +   
Sbjct: 209 TARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268

Query: 265 NILV-EAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVP 318
            + V  AG + K+  LL    + +        + L  LA  +   +++I+  G   
Sbjct: 269 KMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 321

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 92.8 bits (230), Expect = 2e-19
 Identities = 72/465 (15%), Positives = 156/465 (33%), Gaps = 66/465 (14%)

Query: 422 DGVARLVLILGLEDERAIAR-AAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVR 480
             V+ +V  +   ++   AR  + ++ ++S +    +   ++G I  LV +L    D+V 
Sbjct: 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVL 251

Query: 481 LATTHALERLSVSRGVCQIMEAE-GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539
                 L  L + +   ++     G +  +V  L   +     +  T D L  +   ++E
Sbjct: 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQE 309

Query: 540 MKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAA-----VSETTTSYGKVLDSVFIG 594
            K          +  G  A  ++  +      +   +     +S  +++   ++++  + 
Sbjct: 310 SKLII------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 363

Query: 595 RMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIE 654
            +   +      L +     L  +     S        +E  L  + Q   L   D ++ 
Sbjct: 364 ALGLHLTDPSQRLVQNCLWTLRNL-----SDAATKQEGMEGLLGTLVQ--LLGSDDINV- 415

Query: 655 GRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYK 714
                     +  A+  +S     LT   ++ +    +     I+ L + +        +
Sbjct: 416 ----------VTCAAGILSN----LTC--NNYKNKMMVCQVGGIEALVRTVLRAGDR--E 457

Query: 715 DWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRII 774
           D     +  L  L+   QD E   N  V L+  +P +++ +   S      A + L R +
Sbjct: 458 DITEPAICALRHLTSRHQDAEMAQN-AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516

Query: 775 SEGVVDSTRAVASEGGIFPLVKLIEEGSNRA----------------------VEAGLAI 812
           +     +   +  +G I  LV+L+                             VEA    
Sbjct: 517 ALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGA 575

Query: 813 LYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTR-ALRLLRNL 856
           L+ L+ D  N   I     +P   +++ S      R A  +L  L
Sbjct: 576 LHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 83.5 bits (206), Expect = 1e-16
 Identities = 66/445 (14%), Positives = 137/445 (30%), Gaps = 90/445 (20%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISINEHMRM-LFKEAGAIKYLVKLLDHSSDA-VR 480
            +  L  +L  ED+  + +AA  +  +S  E  R  + +    +  +V+ + +++D    
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 210

Query: 481 LATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540
             T+  L  LS  R     +   G +  LVN L +    +S++   +  L  +L   +  
Sbjct: 211 RCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPV--DSVLFHAITTLHNLLLHQEGA 268

Query: 541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIM 600
           K                              V  A                 + +M+ ++
Sbjct: 269 KMA----------------------------VRLAGG---------------LQKMVALL 285

Query: 601 KTSYPDLQRKAASILEFITIIDP-SMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPE 659
             +           L+ +   +  S   I+++    G  A+                   
Sbjct: 286 NKTNVKFLAITTDCLQILAYGNQESKLIILASG---GPQALVNI---------------- 326

Query: 660 KYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAA 719
              +        +   +R+L  L         I     ++ L   L           V  
Sbjct: 327 ---MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ----RLVQN 379

Query: 720 CLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVV 779
           CL  L  LS            +  +   +  L++ + S        A   L   ++    
Sbjct: 380 CLWTLRNLSDAATK-------QEGMEGLLGTLVQLLGSDDINVVTCAAGIL-SNLTCNNY 431

Query: 780 DSTRAVASEGGIFPLVKLIEEGSNRA--VEAGLAILYNLSMDSENH----SAIIAAGAVP 833
            +   V   GGI  LV+ +    +R    E  +  L +L+   ++     +A+     +P
Sbjct: 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP 491

Query: 834 ALRRIVLS--QRPQWTRALRLLRNL 856
            + +++      P     + L+RNL
Sbjct: 492 VVVKLLHPPSHWPLIKATVGLIRNL 516

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 79.3 bits (195), Expect = 3e-15
 Identities = 58/446 (13%), Positives = 139/446 (31%), Gaps = 58/446 (13%)

Query: 422 DGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDA-V 479
            G+ ++V +L   + + +A   + +  ++  N+  +++   +G  + LV ++   +   +
Sbjct: 276 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 335

Query: 480 RLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539
              T+  L+ LSV       +   G +  L   L   D S+ L++  L  L  + D + +
Sbjct: 336 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT--DPSQRLVQNCLWTLRNLSDAATK 393

Query: 540 MKSKFYDIPV------NGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFI 593
            +     +        +     +  A            ++         +   V     I
Sbjct: 394 QEGMEGLLGTLVQLLGSDDINVVTCA----------AGILSNLTCNNYKNKMMVCQVGGI 443

Query: 594 GRMIGIM--KTSYPDLQRKAASILEFITIIDPSMDTIISADIESG-LDAIFQQKALEDTD 650
             ++  +       D+   A   L  +T      +   +A      L  +   K L    
Sbjct: 444 EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV--KLLHPPS 501

Query: 651 SDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVP 710
                         + +A++       L+  L         +     I  L ++L     
Sbjct: 502 HWP-----------LIKATVG------LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 544

Query: 711 LHYKDWVAACLVKLSCLSGPDQDF------------ENPINMEVTLYE-AIPRLIEQIKS 757
              +        +        ++              +  N  V      IP  ++ + S
Sbjct: 545 DTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYS 604

Query: 758 FSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLS 817
                +  A   L  +  +   ++  A+ +EG   PL +L+   +        A+L+ +S
Sbjct: 605 PIENIQRVAAGVLCELAQDK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662

Query: 818 MDS-ENHSAIIAAGAVPALRRIVLSQ 842
            D  +++   ++     +L R     
Sbjct: 663 EDKPQDYKKRLSVELTSSLFRTEPMT 688

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 70.1 bits (171), Expect = 2e-12
 Identities = 30/184 (16%), Positives = 48/184 (26%), Gaps = 26/184 (14%)

Query: 116 DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESS--------------- 160
                 +A   L +           + +  G I   V LL                    
Sbjct: 501 SHWPLIKATVGLIRNLALCPANHAPLRE-QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 559

Query: 161 -------AACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTL 213
                     EA  G L  ++     R ++     I     LL  P     ++  +   L
Sbjct: 560 VEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI--ENIQRVAAGVL 617

Query: 214 WNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNI-LVEAGV 272
             L+ DK+    I        L + L   N  V   A  VL  ++  K       +   +
Sbjct: 618 CELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVEL 677

Query: 273 IPKL 276
              L
Sbjct: 678 TSSL 681

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 62.7 bits (152), Expect = 3e-10
 Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 6/149 (4%)

Query: 174 SSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA--NTDI 231
               ++ + + E   I         P+    + E S   L +  V+  +    A   T  
Sbjct: 93  VRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQM-LKHAVVNLINYQDDAELATRA 151

Query: 232 LPLLIKSLEDENMKVKEAAGGVLANLALSKSN-HNILVEAGVIPKLAMLLKANVEGSKVI 290
           +P L K L DE+  V   A  ++  L+  +++ H I+    ++  +   ++         
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVET 209

Query: 291 RKEARNALIELAKDDYYRILIIEEGLVPV 319
            +     L  L+      + I + G +P 
Sbjct: 210 ARCTSGTLHNLSHHREGLLAIFKSGGIPA 238

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 11/118 (9%)

Query: 742 VTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEG 801
                A P  ++++   S   + A V  +N            A  +   I  L KL+ + 
Sbjct: 111 TQFDSAHPTNVQRLAEPSQMLKHAVVNLINY--------QDDAELATRAIPELTKLLNDE 162

Query: 802 SNRAVEAGLAILYNLS-MDSENHSAIIAAGAVPALRRIVLSQRPQWTR--ALRLLRNL 856
               V     +++ LS  ++  H+ + +   V A+ R + +     T       L NL
Sbjct: 163 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  113 bits (285), Expect = 2e-27
 Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 17/224 (7%)

Query: 109 QMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAG 168
            +    Y    R  A  AL   + G       +    GC+   V  L+SES    +  A 
Sbjct: 90  GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 149

Query: 169 LLRSISSI--NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLK 225
           +LR++S       +  + E G+++ +              +  +  LWNLS    +++  
Sbjct: 150 VLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKAD 208

Query: 226 IANTD-----ILPLLIKSLEDENMKVKEAAGGVLANL----ALSKSNHNILVEAGVIPKL 276
           I   D     ++  L    +   + + E+ GG+L N+    A ++ +  IL E   +  L
Sbjct: 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 268

Query: 277 AMLLKANVEGSKVIRKEARNALIEL-AKDDYYRILIIEEGLVPV 319
              LK+    S  I   A   L  L A++   +  + + G V +
Sbjct: 269 LQHLKS---HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM 309

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 91.8 bits (228), Expect = 5e-20
 Identities = 40/212 (18%), Positives = 80/212 (37%), Gaps = 14/212 (6%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   V  L  + + L ++     L   S          ++  G +   +         + 
Sbjct: 129 MRALVAQLKSESEDL-QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 187

Query: 164 -EAAAGLLRSISSIN--VYRDLVAECGAIEEITGLLTRP--SLTSEVKEQSMCTLWNLS- 217
            ++    L ++S+       D+ A  GA+  + G LT    + T  + E     L N+S 
Sbjct: 188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247

Query: 218 ---VDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL-ALSKSNHNILVEAGVI 273
               ++ HR  +   + L  L++ L+  ++ +   A G L NL A +  +   L + G +
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307

Query: 274 PKLAMLLKANVEGSKVIRKEARNALIELAKDD 305
             L  L+ +     K+I   +  AL  L  + 
Sbjct: 308 SMLKNLIHS---KHKMIAMGSAAALRNLMANR 336

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 89.5 bits (222), Expect = 3e-19
 Identities = 30/201 (14%), Positives = 66/201 (32%), Gaps = 17/201 (8%)

Query: 134 GKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEIT 193
            + C ++       ++   N + +        A  +L  +S    +R  + E G ++ I 
Sbjct: 20  CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIA 79

Query: 194 GLLTRPSLT---------SEVKEQSMCTLWNLSV--DKKHRLKIANTDILPLLIKSLEDE 242
            LL                 ++  +   L NL+           +    +  L+  L+ E
Sbjct: 80  ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 139

Query: 243 NMKVKEAAGGVLANLALSKSNHN--ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIE 300
           +  +++    VL NL+     ++   L E G +  L           +   K   +AL  
Sbjct: 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV--KKESTLKSVLSALWN 197

Query: 301 LAK--DDYYRILIIEEGLVPV 319
           L+    +    +   +G +  
Sbjct: 198 LSAHCTENKADICAVDGALAF 218

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 85.7 bits (212), Expect = 5e-18
 Identities = 34/180 (18%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 108 VQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLL----RSESSAAC 163
           ++           +  + ALW  S    +    I    G +   V  L    ++ + A  
Sbjct: 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 235

Query: 164 EAAAGLLRSISSI----NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV- 218
           E+  G+LR++SS+      +R ++ E   ++ +   L   SL   +   +  TLWNLS  
Sbjct: 236 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL--TIVSNACGTLWNLSAR 293

Query: 219 DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH----NILVEAGVIP 274
           + K +  + +   + +L   +  ++  +   +   L NL  ++       NI+     +P
Sbjct: 294 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 63.7 bits (155), Expect = 7e-11
 Identities = 50/322 (15%), Positives = 104/322 (32%), Gaps = 51/322 (15%)

Query: 219 DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAM 278
           +     + A+   +      +          A  VL  L+  + + + + E G +  +A 
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80

Query: 279 LLKANVEGSKV--------IRKEARNALIELAKDD--YYRILIIEEGLVPVPMVGADAYK 328
           LL+ + E   +        +R+ A  AL  L   D      L   +G +   +V     K
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR-ALV--AQLK 137

Query: 329 SFRPELH----------SWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAK 378
           S   +L           SW +  +  +  R        G+ + L+   +  K  +  ++ 
Sbjct: 138 SESEDLQQVIASVLRNLSWRADVNSKKTLREV------GSVKALMECALEVKKESTLKSV 191

Query: 379 MNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERA 438
           ++A          +   +    + +       I      L ++  V  L           
Sbjct: 192 LSA----------LWNLSAHCTENKA-----DICAVDGALAFL--VGTLTYRSQTNTLAI 234

Query: 439 IARAAESIADIS----INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-S 493
           I      + ++S     NE  R + +E   ++ L++ L   S  +       L  LS  +
Sbjct: 235 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 294

Query: 494 RGVCQIMEAEGVVHPLVNTLKN 515
               + +   G V  L N + +
Sbjct: 295 PKDQEALWDMGAVSMLKNLIHS 316

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 14/175 (8%)

Query: 690 QTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIP 749
           +T+     +K L +             V + L  LS     ++     I     +  A+ 
Sbjct: 164 KTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA---DI---CAVDGALA 217

Query: 750 RLIE----QIKSFSSEAREAAVIELNRIISEGVVDS--TRAVASEGGIFPLVKLIEEGSN 803
            L+     + ++ +    E+    L  + S    +    + +     +  L++ ++  S 
Sbjct: 218 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277

Query: 804 RAVEAGLAILYNLSM-DSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL 856
             V      L+NLS  + ++  A+   GAV  L+ ++ S+       +   LRNL
Sbjct: 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 26/197 (13%)

Query: 677 RLLTKLLDSKQFCQTINSTHF--IKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDF 734
            LL ++    + C      H   +   +  + + V  H        L+KLS       D 
Sbjct: 11  HLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVE-HQICPAVCVLMKLS------FDE 63

Query: 735 ENPINMEVTLYEAIPRLIEQIKS-----------FSSEAREAAVIELNRIISEGVVDSTR 783
           E+     +     +  + E ++            +S   R  A + L  +    V +   
Sbjct: 64  EHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121

Query: 784 AVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSM--DSENHSAIIAAGAVPALRRIVLS 841
             + +G +  LV  ++  S    +   ++L NLS   D  +   +   G+V AL    L 
Sbjct: 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 181

Query: 842 QRPQWTR--ALRLLRNL 856
            + + T    L  L NL
Sbjct: 182 VKKESTLKSVLSALWNL 198

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 10/141 (7%)

Query: 698 IKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKS 757
           +  L    ++N  L   +     L  +S L   ++D    +         +  L++ +KS
Sbjct: 220 VGTLTYRSQTNT-LAIIESGGGILRNVSSLIATNEDHRQILREN----NCLQTLLQHLKS 274

Query: 758 FSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLS 817
            S      A   L   +S        A+   G +  L  LI            A L NL 
Sbjct: 275 HSLTIVSNACGTL-WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333

Query: 818 MDSENH----SAIIAAGAVPA 834
            +        + +    ++P+
Sbjct: 334 ANRPAKYKDANIMSPGSSLPS 354

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 763 REAAVIE-LNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSE 821
               ++  L +I +          A E G+      +       +   + +L  LS D E
Sbjct: 5   HHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 822 NHSAIIAAGAVPAL 835
           +  A+   G + A+
Sbjct: 65  HRHAMNELGGLQAI 78

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 422 DGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVR 480
           + +  L+  L       ++ A  ++ ++S  N   +    + GA+  L  L+      + 
Sbjct: 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 322

Query: 481 LATTHALERLSVSR----GVCQIMEAEGVV 506
           + +  AL  L  +R        IM     +
Sbjct: 323 MGSAAALRNLMANRPAKYKDANIMSPGSSL 352

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 11/99 (11%), Positives = 20/99 (20%), Gaps = 1/99 (1%)

Query: 431 LGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERL 490
           +G      +    E I                  +      +    +         L +L
Sbjct: 1   MGHHHHHHMLHLLEQIRAYC-ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 59

Query: 491 SVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDI 529
           S        M   G +  +   L+       L      I
Sbjct: 60  SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSI 98

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  108 bits (272), Expect = 1e-26
 Identities = 46/220 (20%), Positives = 95/220 (43%), Gaps = 11/220 (5%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +    Q L    D  ++  A     +    G + I  ++  +G +   V LL S +    
Sbjct: 14  LPQMTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLSSPNEQIL 71

Query: 164 EAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KK 221
           + A   L +I+S        V + GA+  +  LL+ P+   ++ ++++  L N++    +
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNE 129

Query: 222 HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLL 280
               + +   LP L++ L   N ++ + A   L+N+A   +     +++AG +P L  LL
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189

Query: 281 KANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPV 319
                 ++ I +EA  AL  +A   +  +  + E G +  
Sbjct: 190 S---SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK 226

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 10/203 (4%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   VQ+L    +    ++A+ AL   + GG + I  ++  +G +   V LL S +    
Sbjct: 56  LPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQIL 113

Query: 164 EAAAGLLRSISSINVY-RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
           + A   L +I+S        V + GA+  +  LL+ P    ++ ++++  L N++     
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNE 171

Query: 223 RLK-IANTDILPLLIKSLEDENMKVKEAAGGVLANLA-LSKSNHNILVEAGVIPKLAMLL 280
           +++ + +   LP L++ L   N ++ + A   L+N+A         + EAG + KL  L 
Sbjct: 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231

Query: 281 KANVEGSKVIRKEARNALIELAK 303
                 ++ I+KEA+ AL +L  
Sbjct: 232 S---HENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 10/186 (5%)

Query: 138 IDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YRDLVAECGAIEEITGLL 196
             +       +      L S+      +A      I S        V + GA+  +  LL
Sbjct: 5   HHHHHH-GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 197 TRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLA 255
           + P+   ++ ++++  L N++    +    + +   LP L++ L   N ++ + A   L+
Sbjct: 64  SSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121

Query: 256 NLAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRI-LIIE 313
           N+A         +++AG +P L  LL      ++ I +EA  AL  +A     +I  +I+
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVID 178

Query: 314 EGLVPV 319
            G +P 
Sbjct: 179 AGALPA 184

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 11/161 (6%)

Query: 698 IKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKS 757
           +  + + L S+     +        ++           N     V    A+P L++ + S
Sbjct: 14  LPQMTQQLNSDDM-QEQLSATRKFSQIL-------SDGNEQIQAVIDAGALPALVQLLSS 65

Query: 758 FSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLS 817
            + +  + A+  L+ I + G  +  +AV   G +  LV+L+   + + ++  L  L N++
Sbjct: 66  PNEQILQEALWALSNI-ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 818 MDSENH-SAIIAAGAVPALRRIVLSQRPQWTR-ALRLLRNL 856
                   A+I AGA+PAL +++ S   Q  + AL  L N+
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806
           A+P L++ + S + +  + A+  L   I+ G  +  +AV   G +  LV+L+   + + +
Sbjct: 139 ALPALVQLLSSPNEQILQEALWAL-SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197

Query: 807 EAGLAILYNLSMDS-ENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
           +  L  L N++    E   A+  AGA+  L ++   +  +    A   L  L
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 746 EAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRA 805
             +P++ +Q+ S   + + +A  + ++I+S+G  +  +AV   G +  LV+L+   + + 
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQI 70

Query: 806 VEAGLAILYNLSMDSENH-SAIIAAGAVPALRRIVLSQRP----QWTRALRLL 853
           ++  L  L N++        A+I AGA+PAL +++ S       +   AL  +
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 14/185 (7%)

Query: 676 ARLLTKLLD-SKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDF 734
            R  +++L    +  Q +     +  L ++L S             L  ++         
Sbjct: 33  TRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIAS-------- 83

Query: 735 ENPIN-MEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFP 793
                   V    A+P L++ + S + +  + A+  L   I+ G  +  +AV   G +  
Sbjct: 84  GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL-SNIASGGNEQIQAVIDAGALPA 142

Query: 794 LVKLIEEGSNRAVEAGLAILYNLSMDSENH-SAIIAAGAVPALRRIVLSQRPQ-WTRALR 851
           LV+L+   + + ++  L  L N++        A+I AGA+PAL +++ S   Q    AL 
Sbjct: 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 202

Query: 852 LLRNL 856
            L N+
Sbjct: 203 ALSNI 207

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 21/115 (18%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 422 DGVARLVLILGLEDERAIARAAESIADISIN--EHMRMLFKEAGAIKYLVKLLDHSSDAV 479
             +  LV +L   +E+ +  A  ++++I+    E ++ +  +AGA+  LV+LL   ++ +
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALVQLLSSPNEQI 196

Query: 480 RLATTHALERLS-VSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRI 533
                 AL  ++       Q ++  G +  L         +E + ++  + L ++
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--HENEKIQKEAQEALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 422 DGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVR 480
             +  LV +L   +E+ +  A  ++++I+           +AGA+  LV+LL   ++ + 
Sbjct: 96  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155

Query: 481 LATTHALERLSVSRGVCQIMEAE-GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539
                AL  ++           + G +  LV  L + +  E ++++ L  L  I     E
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNE 213

Query: 540 MK 541
            K
Sbjct: 214 QK 215

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 423 GVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481
            +  LV +L   +E+ +  A  ++++I+      +   KEAGA++ L +L  H ++ ++ 
Sbjct: 181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQK 240

Query: 482 ATTHALERLS 491
               ALE+L 
Sbjct: 241 EAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 427 LVLILGLEDERAIARAAESIADI-SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH 485
           +   L  +D +    A    + I S          +AGA+  LV+LL   ++ +      
Sbjct: 17  MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76

Query: 486 ALERLSV-SRGVCQIMEAEGVVHPLVNTLKN 515
           AL  ++       Q +   G +  LV  L +
Sbjct: 77  ALSNIASGGNEQIQAVIDAGALPALVQLLSS 107

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 15/152 (9%)

Query: 666 EEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLS 725
           +EA  A+S  A          +  Q +     +  L ++L S             L  ++
Sbjct: 114 QEALWALSNIAS------GGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIA 166

Query: 726 CLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAV 785
                           V    A+P L++ + S + +  + A+  L+ I + G  +  +AV
Sbjct: 167 SGGNEQIQA-------VIDAGALPALVQLLSSPNEQILQEALWALSNI-ASGGNEQKQAV 218

Query: 786 ASEGGIFPLVKLIEEGSNRAVEAGLAILYNLS 817
              G +  L +L    + +  +     L  L 
Sbjct: 219 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 99.6 bits (249), Expect = 7e-24
 Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 10/203 (4%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   VQ L    D  + + A+  L + + GG + I  ++  +G +   V LL S +    
Sbjct: 14  LPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVID-AGALPALVQLLSSPNEQIL 71

Query: 164 EAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KK 221
           + A   L +I+S        V + GA+  +  LL+ P+   ++ ++++  L N++    +
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNE 129

Query: 222 HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLL 280
               + +   LP L++ L   N ++ + A   L+N+A         + EAG + KL  L 
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189

Query: 281 KANVEGSKVIRKEARNALIELAK 303
                 ++ I+KEA+ AL +L  
Sbjct: 190 S---HENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 89.6 bits (223), Expect = 2e-20
 Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 9/178 (5%)

Query: 145 SGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YRDLVAECGAIEEITGLLTRPSLTS 203
              +   V  L S      ++A   L  I+S        V + GA+  +  LL+ P+   
Sbjct: 11  GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN--E 68

Query: 204 EVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL-SK 261
           ++ ++++  L N++    +    + +   LP L++ L   N ++ + A   L+N+A    
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128

Query: 262 SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVP 318
                +++AG +P L  LL      ++ I +EA  AL  +A   +  +  + E G + 
Sbjct: 129 EQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 27/143 (18%), Positives = 59/143 (41%), Gaps = 8/143 (5%)

Query: 180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKS 238
                    + ++   L  P    +  + ++  L  ++    +    + +   LP L++ 
Sbjct: 5   HHHHHHGSELPQMVQQLNSPDQ--QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62

Query: 239 LEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKANVEGSKVIRKEARNA 297
           L   N ++ + A   L+N+A   +     +++AG +P L  LL      ++ I +EA  A
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWA 119

Query: 298 LIELAKD-DYYRILIIEEGLVPV 319
           L  +A   +     +I+ G +P 
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPA 142

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806
           A+P L++ + S + +  + A+  L   I+ G  +  +AV   G +  LV+L+   + + +
Sbjct: 55  ALPALVQLLSSPNEQILQEALWAL-SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113

Query: 807 EAGLAILYNLSMDS-ENHSAIIAAGAVPALRRIVLSQRPQWTR-ALRLLRNL 856
           +  L  L N++    E   A+I AGA+PAL +++ S   Q  + AL  L N+
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806
            +P++++Q+ S   +  ++A+ +L   I+ G  +  +AV   G +  LV+L+   + + +
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKL-SQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 807 EAGLAILYNLSMDSENHS-AIIAAGAVPALRRIVLSQRP 844
           +  L  L N++        A+I AGA+PAL +++ S   
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 110

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806
           A+P L++ + S + +  + A+  L   I+ G  +  +AV   G +  LV+L+   + + +
Sbjct: 97  ALPALVQLLSSPNEQILQEALWAL-SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155

Query: 807 EAGLAILYNLSMDSENH-SAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
           +  L  L N++        A+  AGA+  L ++   +  +    A   L  L
Sbjct: 156 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 220 KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNI--LVEAGVIPKLA 277
           +       +   LP +++ L   + +  ++A   L+ +A S  N  I  +++AG +P L 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIA-SGGNEQIQAVIDAGALPALV 60

Query: 278 MLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVP 318
            LL      ++ I +EA  AL  +A   +     +I+ G +P
Sbjct: 61  QLLS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481
            + ++V  L   D++ +  A   ++ I+           +AGA+  LV+LL   ++ +  
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 482 ATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKN 515
               AL  ++       Q +   G +  LV  L +
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 107

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 422 DGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVR 480
             +  LV +L   +E+ +  A  ++++I+           +AGA+  LV+LL   ++ + 
Sbjct: 96  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155

Query: 481 LATTHALERL-SVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRI 533
                AL  + S      Q ++  G +  L         +E + ++  + L ++
Sbjct: 156 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481
            +  LV +L   +E+ +  A  ++++I+           +AGA+  LV+LL   ++ +  
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114

Query: 482 ATTHALERLSVSRGVC-QIMEAEGVVHPLVNTLKNLDI 518
               AL  ++       Q +   G +  LV  L + + 
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 152

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481
            +  LV +L   +E+ +  A  ++++I+      +   KEAGA++ L +L  H ++ ++ 
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQK 198

Query: 482 ATTHALERLS 491
               ALE+L 
Sbjct: 199 EAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 784 AVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLS-MDSENHSAIIAAGAVPALRRIVLSQ 842
                  +  +V+ +     + +++ L  L  ++   +E   A+I AGA+PAL +++ S 
Sbjct: 7   HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP 66

Query: 843 RPQW-TRALRLLRNL 856
             Q    AL  L N+
Sbjct: 67  NEQILQEALWALSNI 81

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806
           A+P L++ + S + +  + A+  L+ I + G  +  +AV   G +  L +L    + +  
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNI-ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 197

Query: 807 EAGLAILYNLS 817
           +     L  L 
Sbjct: 198 KEAQEALEKLQ 208

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  102 bits (256), Expect = 4e-23
 Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 9/220 (4%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           VA FV+ L    +   + ++   L   + G       ++Q +G + + + LL SE     
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLSSEFEDVQ 124

Query: 164 EAAAGLLRSISSINV-YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
           E A   L +I+  +   RD V +C  +  +  L ++ +    +   ++  L NL   K  
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN-RLTMTRNAVWALSNLCRGKSP 183

Query: 223 RLKIANT-DILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLL 280
             + A     L +L   L   +  V   A   L+ L+   ++    +++AGV  +L  LL
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL 243

Query: 281 KANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPV 319
                    +   A  A+  +   DD    +I+    +  
Sbjct: 244 M---HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQS 280

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 88.0 bits (218), Expect = 2e-18
 Identities = 62/393 (15%), Positives = 128/393 (32%), Gaps = 68/393 (17%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESS-AA 162
           V +F+++L  +++ + +EQAV AL   +     C DY++     +   + L   ++    
Sbjct: 109 VPIFIELLSSEFEDV-QEQAVWALGNIAGDSTMCRDYVLD-CNILPPLLQLFSKQNRLTM 166

Query: 163 CEAAAGLLRSISSINVYR-DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDK 220
              A   L ++        +       +  ++ LL      ++V   +   L  LS    
Sbjct: 167 TRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF--VSDTDVLADACWALSYLSDGPN 224

Query: 221 KHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAML 279
                + +  +   L++ L   + KV   A   + N+         +++    +  L  L
Sbjct: 225 DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL 284

Query: 280 LKANVEGSKVIRKEARNALIELAKDDYYRI-LIIEEGLVPVPMVGADAYKSFRPELHSWP 338
           L       + I+KEA   +  +   +  +I  +I+  + P  ++                
Sbjct: 285 LS---SPKESIKKEACWTISNITAGNRAQIQTVIDANIFP-ALI---------------- 324

Query: 339 SLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIE 398
                  I +T++  ++  A   +           I               +LV +G I+
Sbjct: 325 ------SILQTAEFRTRKEAAWAITNATSGGSAEQIK--------------YLVELGCIK 364

Query: 399 SEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISIN--EHMR 456
                             LL  +D     V + GLE    I R  E  A  +        
Sbjct: 365 P--------------LCDLLTVMDSKIVQVALNGLE---NILRLGEQEAKRNGTGINPYC 407

Query: 457 MLFKEAGAIKYLVKLLDHSSDAVRLATTHALER 489
            L +EA  +  +  L  H +  +       +E 
Sbjct: 408 ALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 9/185 (4%)

Query: 141 IMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN---VYRDLVAECGAIEEITGLLT 197
           +       +  + ++ S+S     +A    R + S        ++++  G +      L 
Sbjct: 15  MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK 74

Query: 198 RPSLTSEVKEQSMCTLWNLSVDKKHRLK-IANTDILPLLIKSLEDENMKVKEAAGGVLAN 256
           R      ++ +S   L N++     + + +     +P+ I+ L  E   V+E A   L N
Sbjct: 75  RKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGN 133

Query: 257 LAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILII-EE 314
           +A  S    + +++  ++P L  L     +    + + A  AL  L +            
Sbjct: 134 IAGDSTMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191

Query: 315 GLVPV 319
             + V
Sbjct: 192 PCLNV 196

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 71.1 bits (174), Expect = 5e-13
 Identities = 65/446 (14%), Positives = 137/446 (30%), Gaps = 62/446 (13%)

Query: 412 DRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEH---MRMLFKEAGAIKYL 468
              + + P     + ++ ++  +       A +    +   E    +  +    G +   
Sbjct: 10  INNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARF 69

Query: 469 VKLLDHSSDA-VRLATTHALERL-SVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKT 526
           V+ L    +  ++  +   L  + S +    +I+   G V   +  L +    E + E+ 
Sbjct: 70  VEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF--EDVQEQA 127

Query: 527 LDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTT---- 582
           +  LG I   S   +    D               L P ++L        ++        
Sbjct: 128 VWALGNIAGDSTMCRDYVLD------------CNILPPLLQLFSKQNRLTMTRNAVWALS 175

Query: 583 --SYGK------VLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIE 634
               GK         S  +  +  ++  S  D+   A   L +++         +   I+
Sbjct: 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV---ID 232

Query: 635 SG-LDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTIN 693
           +G    + +   L   D  +           +  A  A+                 Q I 
Sbjct: 233 AGVCRRLVE--LLMHNDYKV-----------VSPALRAVGNIVT------GDDIQTQVIL 273

Query: 694 STHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIE 753
           +   ++ L  +L S      K+   AC   +S ++  ++         V      P LI 
Sbjct: 274 NCSALQSLLHLLSSPKESIKKE---ACWT-ISNITAGNRA----QIQTVIDANIFPALIS 325

Query: 754 QIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAIL 813
            +++     R+ A   +    S G  +  + +   G I PL  L+    ++ V+  L  L
Sbjct: 326 ILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGL 385

Query: 814 YNLSMDSENHSAIIAAGAVPALRRIV 839
            N+    E  +     G  P    I 
Sbjct: 386 ENILRLGEQEAKRNGTGINPYCALIE 411

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 47/267 (17%), Positives = 91/267 (34%), Gaps = 32/267 (11%)

Query: 593 IGRMIGIMKTS-YPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDS 651
           + R +  +K      LQ ++A +L  I   +     I+   I++G   IF +  L     
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIV---IQAGAVPIFIE-LLSSEFE 121

Query: 652 DIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPL 711
           D++           E+A  A+   A       DS      +   + +  L ++      L
Sbjct: 122 DVQ-----------EQAVWALGNIAG------DSTMCRDYVLDCNILPPLLQLFSKQNRL 164

Query: 712 HYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELN 771
                    L  L     P  +F         +   +  L   +    ++    A   L 
Sbjct: 165 TMTRNAVWALSNLCRGKSPPPEF-------AKVSPCLNVLSWLLFVSDTDVLADACWAL- 216

Query: 772 RIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHS-AIIAAG 830
             +S+G  D  +AV   G    LV+L+     + V   L  + N+    +  +  I+   
Sbjct: 217 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS 276

Query: 831 AVPALRRIVLSQRP-QWTRALRLLRNL 856
           A+ +L  ++ S +      A   + N+
Sbjct: 277 ALQSLLHLLSSPKESIKKEACWTISNI 303

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAV-ASEGGIFPLVKLIEEGSNRA 805
               +IE I S S E + +A  +  +++S+        V ++ G +   V+ ++   N  
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 806 V--EAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
           +  E+   +    S +S     +I AGAVP    ++ S+      +A+  L N+
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 16/112 (14%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 212 TLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN---HNILV 268
            +        +        I   +I+ +  ++ + + +A      L   + N     ++ 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 269 EAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPV 319
             GV+ +    LK   + +  ++ E+   L  +A  +     ++I+ G VP+
Sbjct: 62  TPGVVARFVEFLKR--KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPI 111

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 47/279 (16%), Positives = 90/279 (32%), Gaps = 46/279 (16%)

Query: 422 DGVARLVLILGLEDERAIAR-AAESIADISINEHMRMLF-KEAGAIKYLVKLLDHSSDAV 479
           + +  L+ +   ++   + R A  +++++   +     F K +  +  L  LL  S   V
Sbjct: 149 NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDV 208

Query: 480 RLATTHALERLS-VSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSK 538
                 AL  LS       Q +   GV   LV  L        ++   L  +G I+    
Sbjct: 209 LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKVVSPALRAVGNIVTGDD 266

Query: 539 EMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-----VIEAA------VSETTTSYGKV 587
                  +              +L   + L  +       EA        +        V
Sbjct: 267 IQTQVILN------------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 314

Query: 588 LDSVFIGRMIGIMKTSYPDLQRKAASILEFIT---------------IIDPSMDTIISAD 632
           +D+     +I I++T+    +++AA  +   T                I P  D +   D
Sbjct: 315 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374

Query: 633 ---IESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEA 668
              ++  L+ +     L + ++   G     Y   IEEA
Sbjct: 375 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  100 bits (251), Expect = 2e-22
 Identities = 70/392 (17%), Positives = 141/392 (35%), Gaps = 20/392 (5%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           V   V+ +  +   + + +A  AL   + G       ++  +  + L + LL + S    
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLYTGSVEVK 190

Query: 164 EAAAGLLRSISSINV-YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
           E A   L +++  +  YRD V +C A+E I GL         +   +  TL NL   KK 
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--SLIRTATWTLSNLCRGKKP 248

Query: 223 RLKIANT-DILPLLIKSLEDENMKVKEAAGGVLANLA-LSKSNHNILVEAGVIPKLAMLL 280
           +   +     LP L K +   + +    A   ++ L+   +     +++  +  +L  LL
Sbjct: 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 308

Query: 281 KANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPV-PMVGADAYKSFRPELHSWP 338
                 S +++  A  A+  +   +D    ++I  G++P   ++ +   ++ + E   W 
Sbjct: 309 S---HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA-CWT 364

Query: 339 SLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIE 398
                       Q          L+ L    +     EA                 G   
Sbjct: 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS-------NASSGGLQR 417

Query: 399 SEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRML 458
            +  R   S+  I     LL   D     V +  LE+   +  A +    ++INE+    
Sbjct: 418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADF- 476

Query: 459 FKEAGAIKYLVKLLDHSSDAVRLATTHALERL 490
            ++AG ++ +     + +D +       +E  
Sbjct: 477 IEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 86.6 bits (214), Expect = 9e-18
 Identities = 77/445 (17%), Positives = 154/445 (34%), Gaps = 58/445 (13%)

Query: 143 QFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYR--DLVAECGAIEEITGLLTRPS 200
           Q    +      L S+      +A    R I S       D+V + G +  +   +    
Sbjct: 84  QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143

Query: 201 LTSEVKEQSMCTLWNL-SVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259
               ++ ++   L N+ S        + + D +PL I+ L   +++VKE A   L N+A 
Sbjct: 144 -PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202

Query: 260 -SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRI-LIIEEGLV 317
            S    + +++   +  +  L          + + A   L  L +    +    +    +
Sbjct: 203 DSTDYRDYVLQCNAMEPILGLFN---SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 259

Query: 318 PV---------PMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVS 368
           P               DA  +          L DG   +   Q        + L+ L +S
Sbjct: 260 PTLAKLIYSMDTETLVDACWAIS-------YLSDGP--QEAIQAVIDVRIPKRLVEL-LS 309

Query: 369 DKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLV 428
            ++  +            +   L  +G I + +    Q++  I+           +  L 
Sbjct: 310 HESTLV------------QTPALRAVGNIVTGNDL--QTQVVINA--------GVLPALR 347

Query: 429 LILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHAL 487
           L+L    E     A  +I++I+  N        +A  I  LVKLL+ +    +     A+
Sbjct: 348 LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 407

Query: 488 ERLSV----SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSK 543
              S        + + + ++G + PL + L+  D    ++E TLD L  IL    E   +
Sbjct: 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD--NRIIEVTLDALENIL-KMGEADKE 464

Query: 544 FYDIPVNGSEKGLDAAESLDPSIEL 568
              + +N +   ++ A  ++     
Sbjct: 465 ARGLNINENADFIEKAGGMEKIFNC 489

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 60.8 bits (147), Expect = 1e-09
 Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 32/260 (12%)

Query: 587 VLDSVFIGRMIGIMKTS-YPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKA 645
           V+ +  + R++  M+ +    LQ +AA  L  I     +   ++   +++    +F Q  
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV---VDADAVPLFIQL- 181

Query: 646 LEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKIL 705
           L     ++            E+A  A+   A       DS  +   +   + ++ +  + 
Sbjct: 182 LYTGSVEV-----------KEQAIWALGNVAG------DSTDYRDYVLQCNAMEPILGLF 224

Query: 706 KSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREA 765
            SN            L  L     P  D+         + +A+P L + I S  +E    
Sbjct: 225 NSN-KPSLIRTATWTLSNLCRGKKPQPDWS-------VVSQALPTLAKLIYSMDTETLVD 276

Query: 766 AVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHS- 824
           A   +   +S+G  ++ +AV        LV+L+   S       L  + N+   ++  + 
Sbjct: 277 ACWAI-SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335

Query: 825 AIIAAGAVPALRRIVLSQRP 844
            +I AG +PALR ++ S + 
Sbjct: 336 VVINAGVLPALRLLLSSPKE 355

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 58.1 bits (140), Expect = 7e-09
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 735 ENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPL 794
             P    V     +PRL+E ++    E  +         I+ G    T+ V     +   
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178

Query: 795 VKLIEEGSNRAVEAGLAILYNLSMDS-ENHSAIIAAGAVPALRRIVLSQRPQWTR-ALRL 852
           ++L+  GS    E  +  L N++ DS +    ++   A+  +  +  S +P   R A   
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238

Query: 853 LRNL 856
           L NL
Sbjct: 239 LSNL 242

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 71/435 (16%), Positives = 139/435 (31%), Gaps = 65/435 (14%)

Query: 442 AAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQI-- 499
            ++   + S++   +   +    +  + + L+      +L+ T    ++        I  
Sbjct: 66  DSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDV 125

Query: 500 MEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAA 559
           +   GVV  LV  ++     E L  +    L  I   +        D            A
Sbjct: 126 VIQAGVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVD------------A 172

Query: 560 ESLDPSIEL----TGNVIEAAVS-------ETTTSYGKVLDSVFIGRMIGIMKTSYPDLQ 608
           +++   I+L    +  V E A+        ++T     VL    +  ++G+  ++ P L 
Sbjct: 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLI 232

Query: 609 RKAASILEFITI-IDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEE 667
           R A   L  +     P  D  + +     L  +     +   D++            + +
Sbjct: 233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL-----IYSMDTET-----------LVD 276

Query: 668 ASLAISAGARLLTKLLD-SKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSC 726
           A  AIS        L D  ++  Q +      K L ++L     L         +  +  
Sbjct: 277 ACWAIS-------YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP-ALRAVGNI-V 327

Query: 727 LSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVA 786
                Q         V     +P L   + S     ++ A   ++ I + G  +  +AV 
Sbjct: 328 TGNDLQT------QVVINAGVLPALRLLLSSPKENIKKEACWTISNITA-GNTEQIQAVI 380

Query: 787 SEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAA----GAVPALRRIVLSQ 842
               I PLVKL+E    +  +     + N S        II      G +  L  ++   
Sbjct: 381 DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA 440

Query: 843 RPQ-WTRALRLLRNL 856
             +     L  L N+
Sbjct: 441 DNRIIEVTLDALENI 455

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =   99 bits (248), Expect = 3e-22
 Identities = 46/413 (11%), Positives = 129/413 (31%), Gaps = 21/413 (5%)

Query: 152 VNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSM 210
           V  L S+        A  ++     +   +  V + G I ++  LL  P+    V++ + 
Sbjct: 8   VQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN--QNVQQAAA 65

Query: 211 CTLWNLSV-DKKHRLKIANTDILPLLIKSL-EDENMKVKEAAGGVLANLALSKSNHNILV 268
             L NL      ++L+    + +   +  L    N ++++   G+L NL+ +      L+
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 269 EAGVIPKLAMLLKANVEGSKVIRKEARN------------ALIELAKDDYYRILIIEEGL 316
              +      ++             +R              L  L+  D  R  +     
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185

Query: 317 VPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDE 376
           +   ++                S+ +   +                  L  + +NA  ++
Sbjct: 186 LIDSLMAYVQNCVAASRCDD-KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244

Query: 377 AKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDE 436
           +       +S +           E+   P+    +     +  +++ + +      LE  
Sbjct: 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304

Query: 437 RAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGV 496
               +   +   +  +   +++  +   +  + +LL   +  V  +    L  +S    +
Sbjct: 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364

Query: 497 CQIMEAEGV---VHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYD 546
            ++M  +        L +   N   SE ++      +  ++    ++  +++ 
Sbjct: 365 HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS 417

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 79.1 bits (194), Expect = 1e-15
 Identities = 54/457 (11%), Positives = 131/457 (28%), Gaps = 37/457 (8%)

Query: 424 VARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLA 482
           + + V  L  +DE+  A  A  I      +E  +    + G I  LV LL   +  V+ A
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 483 TTHALERLSVSRGVCQI-MEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK 541
              AL  L       ++    +  +   V+ L+    +E   + T  +    L  + E+K
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWN--LSSTDELK 121

Query: 542 SKFYD-----------IPVNGSEKGLDAAESLDPSIELTGNVIEA--AVSETTTSYGKVL 588
            +              IP +G   G           E+  N       +S        + 
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 589 DSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALED 648
           +   +   +     +     R     +E    +  ++   + A++ +    +        
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 649 TDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSN 708
           T+    G    K    +             L +   + +    +  +  I+    ++   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCP------LPEEETNPKGSGWLYHSDAIRTYLNLMGK- 294

Query: 709 VPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVI 768
                    A      +  +           +     + +P++   ++S +S+   +   
Sbjct: 295 -SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGAS 353

Query: 769 ELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNR------AVEAGLAILYNLSMDS-E 821
            L+ +           V        + +L+   +         + +    + NL     +
Sbjct: 354 LLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ 410

Query: 822 NHSAIIAAGAVPALRRIVLSQRPQWTR--ALRLLRNL 856
                 ++  +  +  +  S         A  LL ++
Sbjct: 411 LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 71.4 bits (174), Expect = 5e-13
 Identities = 60/454 (13%), Positives = 138/454 (30%), Gaps = 41/454 (9%)

Query: 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVK 247
           I +    L+      + +      + +    D+  + ++     +  L+  L   N  V+
Sbjct: 4   IPKAVQYLSSQD--EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 248 EAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY 306
           +AA G L NL   S +N         I +   LL+    G+  I+K+    L  L+  D 
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT--GNAEIQKQLTGLLWNLSSTDE 119

Query: 307 YRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLN 366
            +  +I + L  +       +  +     +        E+           A   L  L+
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN--------ATGCLRNLS 171

Query: 367 VSDKN--ANIDEAK--------MNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLT 416
            +D       + +         +   V  SR         +        + +  +  +  
Sbjct: 172 SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR 231

Query: 417 LLPW-----IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKL 471
            L +         +         D+         + +   N         + AI+  + L
Sbjct: 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291

Query: 472 LDHSS-DAVRLATTHALERLSVSRGV------CQIMEAEGVVHPLVNTLKNLDISESLME 524
           +  S  DA   A   AL+ L+ S+G+        I   E  +  +   L++ +    ++ 
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN--SDVVR 349

Query: 525 KTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSY 584
               +L  +       +     +    +        +   S ++  +      +   +  
Sbjct: 350 SGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409

Query: 585 ---GKVLDSVFIGRMIGIMKTSYPDLQRKAASIL 615
               +   S  +  +I + ++S      +AA +L
Sbjct: 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 48/433 (11%), Positives = 116/433 (26%), Gaps = 69/433 (15%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   V +L    +   ++ A  AL               + +G       L R+ ++   
Sbjct: 46  ICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 164 EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLT--------------SEVKEQS 209
           +   GLL ++SS +  ++ +    A+  +   +  P                  EV   +
Sbjct: 105 KQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163

Query: 210 MCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVE 269
              L NLS     R  + N   L   + +     +         + N      N +  ++
Sbjct: 164 TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLD 223

Query: 270 AGVIPKLAMLLKANVEGSKVIRKEARNALI-ELAKDDYYRILIIEEGLVPVPMVGADAYK 328
           A V  +   L                 +   +   ++ Y   + EE   P          
Sbjct: 224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283

Query: 329 SFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQ 388
           + R  L+                         L+              A  N    +   
Sbjct: 284 AIRTYLN-------------------------LMGKSKKDATLEACAGALQNLTASKGLM 318

Query: 389 HFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIAD 448
              +       E G                        +  +L   +   +   A  +++
Sbjct: 319 SSGMSQLIGLKEKGLPQ---------------------IARLLQSGNSDVVRSGASLLSN 357

Query: 449 ISINEHMRMLFKEAGAIKYLVKLLDHS-----SDAVRLATTHALERLSV-SRGVCQIMEA 502
           +S +  +  +       +    L  H+     S+ +  +  + +  L      + +   +
Sbjct: 358 MSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS 417

Query: 503 EGVVHPLVNTLKN 515
             +++ ++N  ++
Sbjct: 418 SSMLNNIINLCRS 430

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 64.9 bits (157), Expect = 5e-11
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 9/176 (5%)

Query: 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYI----MQFSGCINLTVNLLR 156
              +  ++ ++G        E    AL   +         +          +     LL+
Sbjct: 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ 341

Query: 157 SESSAACEAAAGLLRSISSINVYRDLVAECG---AIEEITGLLTRPSLTSEVKEQSMCTL 213
           S +S    + A LL ++S   +   ++           +T      S + ++   +  T+
Sbjct: 342 SGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401

Query: 214 WNLSV-DKKHRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNIL 267
            NL     +   +  ++ +L  +I       + K  EAA  +L+++  SK    +L
Sbjct: 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 61.0 bits (147), Expect = 8e-10
 Identities = 28/182 (15%), Positives = 63/182 (34%), Gaps = 18/182 (9%)

Query: 136 KCIDYIMQFSGCINLTVNLLR-SESSAACEAAAGLLRSISSIN------VYRDLVAECGA 188
           K   ++      I   +NL+  S+  A  EA AG L+++++        + + +  +   
Sbjct: 274 KGSGWLYHSD-AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332

Query: 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIK-----SLEDEN 243
           + +I  LL   +  S+V       L N+S        + N     +             +
Sbjct: 333 LPQIARLLQSGN--SDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNS 390

Query: 244 MKVKEAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELA 302
             +  +A   + NL             + ++  +  L +++   S    + AR  L ++ 
Sbjct: 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS--ASPKAAEAARLLLSDMW 448

Query: 303 KD 304
             
Sbjct: 449 SS 450

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 53/436 (12%), Positives = 145/436 (33%), Gaps = 55/436 (12%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDA-VR 480
           G+ +LV +L   ++     AA ++ ++   +   ++  +    I+  V LL  + +A ++
Sbjct: 45  GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 481 LATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540
              T  L  LS +  + + + A+ +   L + +  +       +   ++   ++DP    
Sbjct: 105 KQLTGLLWNLSSTDELKEELIADALP-VLADRV--IIPFSGWCDGNSNMSREVVDP---- 157

Query: 541 KSKFYDIPVNGSE--KGLDAAESLDPSIELTGNVIEAAVS-ETTTSYGKVLDSVFIGRMI 597
                ++  N +   + L +A++   ++     +I++ ++           D   +   +
Sbjct: 158 -----EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212

Query: 598 GIMKTSYPDLQRKAASILEFITIIDPSMDTIISA-----DIESGLDAIFQQKALEDTDSD 652
            ++      L  +  +    +     +  T  S+     +    +        L + +++
Sbjct: 213 CVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272

Query: 653 IEGRQPEKYALDIE---------------EASLAISAGARLLTKLLDSKQFCQTINSTHF 697
            +G     ++  I                EA             L+ S            
Sbjct: 273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332

Query: 698 IKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKS 757
           +  + ++L+S          A+ L  +S          +P+   V   +  P +   + S
Sbjct: 333 LPQIARLLQSGNS-DVVRSGASLLSNMSR---------HPLLHRVMGNQVFPEVTRLLTS 382

Query: 758 F------SSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIE-EGSNRAVEAGL 810
                  S +   +A   +  +++       +   S   +  ++ L     S +A EA  
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441

Query: 811 AILYNLSMDSENHSAI 826
            +L ++    E    +
Sbjct: 442 LLLSDMWSSKELQGVL 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 98.1 bits (244), Expect = 1e-21
 Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 17/217 (7%)

Query: 116 DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISS 175
               R  A  AL   + G       +    GC+   V  L+SES    +  A +LR++S 
Sbjct: 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 272

Query: 176 I--NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV--DKKHRLKIANTDI 231
                 +  + E G+++ +              +  +  LWNLS    +      A    
Sbjct: 273 RADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGA 331

Query: 232 LPLLIKSLEDEN----MKVKEAAGGVLANL----ALSKSNHNILVEAGVIPKLAMLLKAN 283
           L  L+ +L   +    + + E+ GG+L N+    A ++ +  IL E   +  L   LK+ 
Sbjct: 332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS- 390

Query: 284 VEGSKVIRKEARNALIEL-AKDDYYRILIIEEGLVPV 319
              S  I   A   L  L A++   +  + + G V +
Sbjct: 391 --HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM 425

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 91.2 bits (226), Expect = 2e-19
 Identities = 40/212 (18%), Positives = 80/212 (37%), Gaps = 14/212 (6%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   V  L  + + L ++     L   S          ++  G +   +         + 
Sbjct: 245 MRALVAQLKSESEDL-QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 303

Query: 164 -EAAAGLLRSISSIN--VYRDLVAECGAIEEITGLLTRP--SLTSEVKEQSMCTLWNLS- 217
            ++    L ++S+       D+ A  GA+  + G LT    + T  + E     L N+S 
Sbjct: 304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363

Query: 218 ---VDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL-ALSKSNHNILVEAGVI 273
               ++ HR  +   + L  L++ L+  ++ +   A G L NL A +  +   L + G +
Sbjct: 364 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 423

Query: 274 PKLAMLLKANVEGSKVIRKEARNALIELAKDD 305
             L  L+ +     K+I   +  AL  L  + 
Sbjct: 424 SMLKNLIHS---KHKMIAMGSAAALRNLMANR 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 86.9 bits (215), Expect = 5e-18
 Identities = 30/165 (18%), Positives = 65/165 (39%), Gaps = 11/165 (6%)

Query: 108 VQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLL----RSESSAAC 163
           ++           +  + ALW  S    +    I    G +   V  L    ++ + A  
Sbjct: 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 351

Query: 164 EAAAGLLRSISSI----NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV- 218
           E+  G+LR++SS+      +R ++ E   ++ +   L   S    +   +  TLWNLS  
Sbjct: 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS--LTIVSNACGTLWNLSAR 409

Query: 219 DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN 263
           + K +  + +   + +L   +  ++  +   +   L NL  ++  
Sbjct: 410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 81.2 bits (200), Expect = 4e-16
 Identities = 70/437 (16%), Positives = 133/437 (30%), Gaps = 90/437 (20%)

Query: 119 DREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE------------SSAACEAA 166
           D++     L   S     CI   M+ SGC+ L + LL               S  A   A
Sbjct: 45  DKDDMSRTLLAMSSSQDSCI--SMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102

Query: 167 AGLLRSISSINVYRDLVAECGAIEEITGLLTR-----------------------PSLTS 203
           +  L +I               +  +   +                         P+   
Sbjct: 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVE 162

Query: 204 EVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIK-----------SLEDENMKVKEAAGG 252
                ++C L  LS D++HR  +     L  + +           + +  ++ ++  AG 
Sbjct: 163 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222

Query: 253 VLANLALSKSNHNILV--EAGVIPKLAMLLKANVEGSKVIRKEARNALIELA--KDDYYR 308
            L NL      +   +    G +  L   LK+    S+ +++   + L  L+   D   +
Sbjct: 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKS---ESEDLQQVIASVLRNLSWRADVNSK 279

Query: 309 ILIIEEGLVPVPMVGADAYKSFRPELH----------SWPSLPDGTEIERTSQGPSKFGA 358
             + E G   V  +   A +  +              S     +  +I          GA
Sbjct: 280 KTLREVGS--VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD------GA 331

Query: 359 NELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLL 418
              L+G        N      +   G  R    V      +ED R+            +L
Sbjct: 332 LAFLVGTLTYRSQTNTLAIIESG-GGILRN---VSSLIATNEDHRQ------------IL 375

Query: 419 PWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSD 477
              + +  L+  L       ++ A  ++ ++S  N   +    + GA+  L  L+     
Sbjct: 376 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 435

Query: 478 AVRLATTHALERLSVSR 494
            + + +  AL  L  +R
Sbjct: 436 MIAMGSAAALRNLMANR 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 67.3 bits (164), Expect = 9e-12
 Identities = 71/456 (15%), Positives = 150/456 (32%), Gaps = 58/456 (12%)

Query: 421 IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD------- 473
           ++ V  L+ +LG  D+  ++R   ++   S ++   +  +++G +  L++LL        
Sbjct: 31  VEMVYSLLSMLGTHDKDDMSRTLLAM---SSSQDSCISMRQSGCLPLLIQLLHGNDKDSV 87

Query: 474 -----HSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLD 528
                  S   R   + AL  +  S+   +    E  V  L+  +      E+  E    
Sbjct: 88  LLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQI--RAYCETCWEWQEA 145

Query: 529 ILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVL 588
               +      M +             +     L    E    + E    +        L
Sbjct: 146 HEPGMDQDKNPMPAPVEHQ----ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE----L 197

Query: 589 DSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALED 648
             V               L+R A   L  +T  D +    + +  +  + A+  Q  L+ 
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM-KGCMRALVAQ--LKS 254

Query: 649 TDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSN 708
              D++           +  +  +    R L+   D     +T+     +K L +     
Sbjct: 255 ESEDLQ-----------QVIASVL----RNLSWRAD-VNSKKTLREVGSVKALMECALEV 298

Query: 709 VPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIE----QIKSFSSEARE 764
                   V + L  LS         EN  ++   +  A+  L+     + ++ +    E
Sbjct: 299 KKESTLKSVLSALWNLSAHCT-----ENKADI-CAVDGALAFLVGTLTYRSQTNTLAIIE 352

Query: 765 AAVIELNRIISEGVVDS--TRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSM-DSE 821
           +    L  + S    +    + +     +  L++ ++  S   V      L+NLS  + +
Sbjct: 353 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 412

Query: 822 NHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL 856
           +  A+   GAV  L+ ++ S+       +   LRNL
Sbjct: 413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 58.0 bits (140), Expect = 7e-09
 Identities = 63/413 (15%), Positives = 129/413 (31%), Gaps = 62/413 (15%)

Query: 227 ANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVE- 285
              +++  L+  L       K+     L  ++ S+ +   + ++G +P L  LL  N + 
Sbjct: 29  TKVEMVYSLLSMLG---THDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKD 85

Query: 286 --------GSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHS- 336
                   GSK  R  A  AL  +            E  V   +    AY     E    
Sbjct: 86  SVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145

Query: 337 -WPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIG 395
             P +                 A  +L+ L+  +++                +H +  +G
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH----------------RHAMNELG 189

Query: 396 AIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISIN--E 453
            ++            I   L +   + G+                 A  ++ +++     
Sbjct: 190 GLQ-----------AIAELLQVDCEMYGLTN-----DHYSITLRRYAGMALTNLTFGDVA 233

Query: 454 HMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVC--QIMEAEGVVHPLVN 511
           +   L    G ++ LV  L   S+ ++      L  LS    V   + +   G V  L+ 
Sbjct: 234 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293

Query: 512 TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGL------DAAESLDPS 565
               +   ES ++  L  L  +     E K+      V+G+   L       +  +    
Sbjct: 294 CALEVK-KESTLKSVLSALWNLSAHCTENKADI--CAVDGALAFLVGTLTYRSQTNTLAI 350

Query: 566 IELTGNVIEAAVSETTTSYG---KVLDSVFIGRMIGIMKTSYPDLQRKAASIL 615
           IE  G ++    S   T+      + ++  +  ++  +K+    +   A   L
Sbjct: 351 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 57.7 bits (139), Expect = 9e-09
 Identities = 31/212 (14%), Positives = 66/212 (31%), Gaps = 45/212 (21%)

Query: 153 NLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAI----------EEITGLLTRPSLT 202
           +LL    +   +  +  L ++SS       + + G +          ++ + LL     +
Sbjct: 36  SLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGS 95

Query: 203 SEVKEQSMCTLWNLS-------------------------VDKKHRLKIANTDILPLLIK 237
            E + ++   L N+                           +     + A+   +     
Sbjct: 96  KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKN 155

Query: 238 SLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVE--------GSKV 289
            +          A  VL  L+  + + + + E G +  +A LL+ + E         S  
Sbjct: 156 PMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 290 IRKEARNALIELAKDD--YYRILIIEEGLVPV 319
           +R+ A  AL  L   D      L   +G +  
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRA 247

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 54.6 bits (131), Expect = 8e-08
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 8/128 (6%)

Query: 104 VALFVQMLGLDYDPLD---REQAVEALWKYSLGGKKCIDYIMQF--SGCINLTVNLLRSE 158
           +A  V  L            E     L   S       D+      + C+   +  L+S 
Sbjct: 332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 391

Query: 159 SSAACEAAAGLLRSISSINV-YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS 217
           S      A G L ++S+ N   ++ + + GA+  +  L+        +   S   L NL 
Sbjct: 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH--KMIAMGSAAALRNLM 449

Query: 218 VDKKHRLK 225
            ++  + K
Sbjct: 450 ANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 4/126 (3%)

Query: 698 IKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTL-YEAIPRLIEQIK 756
           +  L   L      +    + +    L  +S       N  + ++      +  L++ +K
Sbjct: 332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVS--SLIATNEDHRQILRENNCLQTLLQHLK 389

Query: 757 SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816
           S S      A   L   +S        A+   G +  L  LI            A L NL
Sbjct: 390 SHSLTIVSNACGTL-WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448

Query: 817 SMDSEN 822
             +   
Sbjct: 449 MANRPA 454

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 42/281 (14%), Positives = 89/281 (31%), Gaps = 48/281 (17%)

Query: 248 EAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYY 307
             + G++   +  +   ++  +  ++  L  +L  +       + +    L+ ++     
Sbjct: 9   HHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHD------KDDMSRTLLAMSSSQDS 62

Query: 308 RILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNV 367
            I + + G +P  ++          +L                   ++  A+  L     
Sbjct: 63  CISMRQSGCLP-LLI----------QLLHGNDKDSVLLGNSRGSKEARARASAAL----- 106

Query: 368 SDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARL 427
                NI  ++ +   GR     L  +  I +        E   + Q    P +D     
Sbjct: 107 ----HNIIHSQPDDKRGRREIRVLHLLEQIRA------YCETCWEWQEAHEPGMDQDKN- 155

Query: 428 VLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLL-----------DHSS 476
              +    E  I  A   +  +S +E  R    E G ++ + +LL           DH S
Sbjct: 156 --PMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS 213

Query: 477 DAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLKN 515
             +R     AL  L+         +   +G +  LV  LK+
Sbjct: 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 254

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 96.9 bits (240), Expect = 6e-21
 Identities = 67/464 (14%), Positives = 157/464 (33%), Gaps = 54/464 (11%)

Query: 156 RSESSAACEAAAGLLRSISSI--NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTL 213
           +   +   +   G L S+ S+              + E+  +L        VK  +   L
Sbjct: 15  QYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLD--AVKSNAAAYL 72

Query: 214 WNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHN--ILVEA 270
            +L   + K +  +     +P+L+  L+    +V   A G L N++  +   N   +   
Sbjct: 73  QHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC 132

Query: 271 GVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPV----------- 319
             +P L  LL+        + +     L  L+  D  ++ I++  L  +           
Sbjct: 133 DGVPALVRLLRKA--RDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGW 190

Query: 320 PMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKF-------GANELLLGLNVSDKNA 372
                +  K    E  S  +   G     +S+            G  + L+ +  ++   
Sbjct: 191 EREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ 250

Query: 373 NIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPI--------DRQLTLLPWIDGV 424
              ++K+        ++   ++     +  R  ++   +         R   LL   + V
Sbjct: 251 KDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVV 310

Query: 425 ARLVLILGL-EDERAIARAAESIADISINEH-----MRMLFKEAGAIKYLVKLLDHSSDA 478
              + +L   +    +  +A +I ++          +R   ++  A+  +  LL +  + 
Sbjct: 311 RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHER 370

Query: 479 VRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNL------DISESLMEKTLDILGR 532
           V  A + AL  L+V     +++  +  +  LV  L         + SE  +   L+ +  
Sbjct: 371 VVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429

Query: 533 ILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAA 576
           ++  + E   K  +       +G++    ++ S   +   + AA
Sbjct: 430 VIAENLEAAKKLRE------TQGIEKLVLINKSGNRSEKEVRAA 467

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 88.5 bits (218), Expect = 3e-18
 Identities = 74/462 (16%), Positives = 141/462 (30%), Gaps = 65/462 (14%)

Query: 89  IKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCI 148
           +++       +    +   + MLG   D + +  A   L        K    + +    I
Sbjct: 35  LRKGGPPPPNWRQPELPEVIAMLGFRLDAV-KSNAAAYLQHLCYRNDKVKTDVRK-LKGI 92

Query: 149 NLTVNLLRSESSAACEAAAGLLR--SISSINVYRDLVAECGAIEEITGLLTRPSLTSEVK 206
            + V LL          A G L+  S       +  +  C  +  +  LL R +   ++ 
Sbjct: 93  PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL-RKARDMDLT 151

Query: 207 EQSMCTLWNLSVDKKHRLKIANTDILPLL-----------------IKSLEDENMKVKEA 249
           E    TLWNLS     +++I +  +  L                   K    E   V   
Sbjct: 152 EVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTN 211

Query: 250 AGGVLANLALSKSNHNILV--EAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYY 307
             G L N++  +S     +    G++  L  +++A +       K   N +  L      
Sbjct: 212 TAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN---- 267

Query: 308 RILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNV 367
                    +   +           E     +   GT   R  +   +     + + L  
Sbjct: 268 ---------LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 368 SDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARL 427
             K   I EA   A+        L           R    +               ++ +
Sbjct: 319 ESKTPAILEASAGAI------QNLCAGRWTYGRYIRSALRQ------------EKALSAI 360

Query: 428 VLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLL---------DHSSDA 478
             +L  E ER +  A+ ++ +++++   + L     AI  LVK L         + S D 
Sbjct: 361 ADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDT 419

Query: 479 VRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISE 520
           V        E ++ +    + +     +  LV   K+ + SE
Sbjct: 420 VISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 73.1 bits (178), Expect = 2e-13
 Identities = 65/453 (14%), Positives = 146/453 (32%), Gaps = 46/453 (10%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481
            +  ++ +LG   +   + AA  +  +   N+ ++   ++   I  LV LLDH    V L
Sbjct: 49  ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108

Query: 482 ATTHALERLSVSR--GVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539
               AL+ +S  R       ++    V  LV  L+       L E     L   L     
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTL-WNLSSHDS 166

Query: 540 MKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGI 599
           +K +  D           A  +L   + +  +  E   +E         +SV       +
Sbjct: 167 IKMEIVD----------HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCL 216

Query: 600 MKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKA---LEDTDSDIEGR 656
              S    + +     E   ++D  +  + +   +   D+   +     L +    +   
Sbjct: 217 RNVSSERSEARRKLR-ECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275

Query: 657 QPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDW 716
            P+         ++A + G           +  + +     +++   +LK +      + 
Sbjct: 276 IPQAERYQEAAPNVANNTGT-------SPARGYELLFQPEVVRIYISLLKESKTPAILEA 328

Query: 717 VAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISE 776
            A  +  L         +   I   +   +A+  + + + +      +AA   L R ++ 
Sbjct: 329 SAGAIQNLCAGRWTYGRY---IRSALRQEKALSAIADLLTNEHERVVKAASGAL-RNLAV 384

Query: 777 GVVDSTRAVASEGGIFPLVKLIEEG--------SNRAVEAGLAILYNLSMDS-ENHSAII 827
                 + +  +  I  LVK +  G        S   V + L  +  +  ++ E    + 
Sbjct: 385 D--ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR 442

Query: 828 AAGAVPALRRIVLSQRPQWTRALR----LLRNL 856
               +  L  I      +  + +R    +L+ +
Sbjct: 443 ETQGIEKLVLI-NKSGNRSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 67.3 bits (163), Expect = 1e-11
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 13/212 (6%)

Query: 72  NGDGASDAIPQQSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYS 131
             +   +A P  +++       G    F    V +++ +L     P   E +  A+    
Sbjct: 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337

Query: 132 LGGKKCIDYI---MQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGA 188
            G      YI   ++    ++   +LL +E     +AA+G LR+++     ++L+    A
Sbjct: 338 AGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIG-KHA 396

Query: 189 IEEITGLLTRPS------LTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLED 241
           I  +   L           + +     + T+  +   + +   K+  T  +  L+   + 
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKS 456

Query: 242 ENM--KVKEAAGGVLANLALSKSNHNILVEAG 271
            N   K   AA  VL  +   K     L + G
Sbjct: 457 GNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 64.2 bits (155), Expect = 1e-10
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 113 LDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRS 172
           +      +E A            +  + + Q          L  S++ A  EA+AG +++
Sbjct: 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQN 335

Query: 173 ISSINVY-----RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA 227
           + +         R  + +  A+  I  LLT       V + +   L NL+VD +++  I 
Sbjct: 336 LCAGRWTYGRYIRSALRQEKALSAIADLLTNEH--ERVVKAASGALRNLAVDARNKELIG 393

Query: 228 NTDILPLLIK-------SLEDENMKVKEAAGGVLANLAL-SKSNHNILVEAGVIPKLAML 279
              I  L+         S  + +     +    +  +   +      L E   I KL ++
Sbjct: 394 KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLI 453

Query: 280 LKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGL 316
            K+     K   + A   L  +      R  + +EG 
Sbjct: 454 NKSGNRSEKE-VRAAALVLQTIWGYKELRKPLEKEGW 489

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 62.7 bits (151), Expect = 3e-10
 Identities = 59/435 (13%), Positives = 126/435 (28%), Gaps = 78/435 (17%)

Query: 440 ARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSR-GVCQ 498
            R + +  D                +  ++ +L    DAV+      L+ L      V  
Sbjct: 25  ERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKT 84

Query: 499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDA 558
            +     +  LV  L +    + +       L + +   ++  +K      +G       
Sbjct: 85  DVRKLKGIPVLVGLLDHPK--KEVHLGACGAL-KNISFGRDQDNKIAIKNCDG------- 134

Query: 559 AESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTS-YPDLQRKAASILEF 617
                                             +  ++ +++ +   DL       L  
Sbjct: 135 ----------------------------------VPALVRLLRKARDMDLTEVITGTLWN 160

Query: 618 ITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGAR 677
           ++  D     I+    +  L A+  +  +  +  + E  +  K      E+ L  +AG  
Sbjct: 161 LSSHDSIKMEIV----DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCL 216

Query: 678 LLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDW--VAACLVKLSCLSGPDQD-- 733
                  S+   +       +  L  I+++ +     D   V  C+  L  LS       
Sbjct: 217 RNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI 276

Query: 734 ------------------FENPINME-VTLYEAIPRLIEQIKSFSSEA-REAAVIELNRI 773
                                    E +   E +   I  +K   + A  EA+   +  +
Sbjct: 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNL 336

Query: 774 ISEGVVDST---RAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAG 830
            +           A+  E  +  +  L+     R V+A    L NL++D+ N   +I   
Sbjct: 337 CAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKH 395

Query: 831 AVPALRRIVLSQRPQ 845
           A+P L + +   +  
Sbjct: 396 AIPNLVKNLPGGQQN 410

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 61.9 bits (149), Expect = 6e-10
 Identities = 62/423 (14%), Positives = 142/423 (33%), Gaps = 40/423 (9%)

Query: 423 GVARLVLILGLEDERAIARAAESIADISI--NEHMRMLFKEAGAIKYLVKLLDHSSDA-V 479
           G+  LV +L    +     A  ++ +IS   ++  ++  K    +  LV+LL  + D  +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 480 RLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539
               T  L  LS    +   +    + H L + +     S    E   D   R ++    
Sbjct: 151 TEVITGTLWNLSSHDSIKMEIVDHAL-HALTDEVIIPH-SGWEREPNEDCKPRHIEWESV 208

Query: 540 MKSKFYDIPV--NGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMI 597
           + +    +    +   +        D  ++    +++A + +  +    V + V + R +
Sbjct: 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268

Query: 598 GIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQ 657
                       +     E      P++          G + +FQ + +    S +   +
Sbjct: 269 -------SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL---K 318

Query: 658 PEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWV 717
             K    +E ++ AI        +    +     +     +  +  +L +          
Sbjct: 319 ESKTPAILEASAGAIQNLCA--GRWTYGRYIRSALRQEKALSAIADLLTNEHE-RVVKAA 375

Query: 718 AACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKS--------FSSEAREAAVIE 769
           +  L  L+          +  N E+    AIP L++ +          FS +   + +  
Sbjct: 376 SGALRNLAV---------DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNT 426

Query: 770 LNRIISEGVVDSTRAVASEGGIFPLVKLIEEG--SNRAVEAGLAILYNLSMDSENHSAII 827
           +N +I+   +++ + +    GI  LV + + G  S + V A   +L  +    E    + 
Sbjct: 427 INEVIA-ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE 485

Query: 828 AAG 830
             G
Sbjct: 486 KEG 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 91.6 bits (227), Expect = 2e-19
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 11/223 (4%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +  FV  LG       + ++  AL   + G  +    ++   G I   ++LL S  +   
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLASPHAHIS 160

Query: 164 EAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
           E A   L +I+     +RDLV + GAI+ +  LL  P L++          W LS   ++
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 223 RLKIANTD----ILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLA 277
           +      D    ILP L++ L   + +V   +   ++ L    +    ++V+ GV+P+L 
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280

Query: 278 MLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPV 319
            LL A       I   A  A+  +    D     +I+ G + V
Sbjct: 281 KLLGAT---ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV 320

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 91.6 bits (227), Expect = 2e-19
 Identities = 83/426 (19%), Positives = 160/426 (37%), Gaps = 47/426 (11%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKY-SLGGKKCIDYIMQFSGCINLTVNLLRSESSAA 162
           V   V+ +  + +   + QA +A  K  S   +  ID I++          L +++ S  
Sbjct: 59  VEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117

Query: 163 CEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK- 220
              +A  L +I+S        V + GAI     LL  P   + + EQ++  L N++ D  
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH--AHISEQAVWALGNIAGDGS 175

Query: 221 KHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHN------ILVEAGVIP 274
             R  +     +  L+  L   ++              LS    N      +     ++P
Sbjct: 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 235

Query: 275 KLAMLLKANVEGSKVIRKEARNALIELAKDDYYRI-LIIEEGLVP--VPMVGADAYKSFR 331
            L  LL         +  ++  A+  L      RI +++++G+VP  V ++GA       
Sbjct: 236 TLVRLLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292

Query: 332 PELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM---NAMVGRSRQ 388
           P L +  ++  GT  +  +Q     GA  +   L  + K     EA     N   GR  Q
Sbjct: 293 PALRAIGNIVTGT--DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 350

Query: 389 -HFLVRIGAIESEDGRKPQSEFPI----------------DRQLTLLPWIDGVARLVLIL 431
              +V  G +    G   +++F                    Q+  L     +  L+ +L
Sbjct: 351 IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410

Query: 432 GLEDERAIARAAESIADI-------SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATT 484
             +D + I    ++I++I          E + ++ +E G +  +  L  H +++V  A+ 
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470

Query: 485 HALERL 490
           + +E+ 
Sbjct: 471 NLIEKY 476

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 69.7 bits (170), Expect = 2e-12
 Identities = 61/491 (12%), Positives = 150/491 (30%), Gaps = 59/491 (12%)

Query: 385 RSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAE 444
             RQH        + +D      +   D           V  +V  +   +  +  +A +
Sbjct: 26  FERQHMDSPDLGTDDDD------KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQ 79

Query: 445 SIADISINEH--MRMLFKEAGAIKYLVKLLDHSSDA-VRLATTHALERL-SVSRGVCQIM 500
           +   +   E          AG I   V  L  +  + ++  +  AL  + S +    + +
Sbjct: 80  AARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139

Query: 501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE 560
              G +   ++ L +      + E+ +  LG I       +           +  L    
Sbjct: 140 VDGGAIPAFISLLASPH--AHISEQAVWALGNIAGDGSAFRDLVIK--HGAIDPLLALLA 195

Query: 561 SLDPSIELTGNVIEAAVSETTTSYGK------VLDSVFIGRMIGIMKTSYPDLQRKAASI 614
             D S    G +     + +     K            +  ++ ++  + P++   +   
Sbjct: 196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255

Query: 615 LEFITIIDPSMDTIISADIESG-LDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAIS 673
           + ++T        ++   ++ G +  + +   L  T+  I           +  A  AI 
Sbjct: 256 ISYLTDGPNERIEMV---VKKGVVPQLVKL--LGATELPI-----------VTPALRAIG 299

Query: 674 AGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQD 733
                      + +  Q +     + +   +L +      K+   A     +  +G    
Sbjct: 300 NIVT------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE---ATWTMSNITAGRQDQ 350

Query: 734 FENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFP 793
            +  +N        +P L+  +     + ++ A   +    S G V+    +   G I P
Sbjct: 351 IQQVVNHG-----LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP 405

Query: 794 LVKLIEEGSNRAVEAGLAILYNLSMDSENHS-------AIIAAGAVPALRRIVLSQRPQ- 845
           L+ L+     + ++  L  + N+   +E           I   G +  +  +   +    
Sbjct: 406 LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESV 465

Query: 846 WTRALRLLRNL 856
           +  +L L+   
Sbjct: 466 YKASLNLIEKY 476

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 64.3 bits (156), Expect = 1e-10
 Identities = 33/234 (14%), Positives = 94/234 (40%), Gaps = 23/234 (9%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           V   V++LG    P+    A+ A+     G  +    ++  +G + +  +LL +  +   
Sbjct: 276 VPQLVKLLGATELPI-VTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQ 333

Query: 164 EAAAGLLRSISSINVY-RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV--DK 220
           + A   + +I++        V   G +  + G+L++     + ++++   + N +     
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF--KTQKEAAWAITNYTSGGTV 391

Query: 221 KHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL-------SKSNHNILVEAGVI 273
           +  + + +  I+  L+  L  ++ K+ +     ++N+         ++    ++ E G +
Sbjct: 392 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 451

Query: 274 PKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAY 327
            K+  L +     ++ + K + N + +    +       EE    VP   ++ +
Sbjct: 452 DKIEALQR---HENESVYKASLNLIEKYFSVEE------EEDQNVVPETTSEGF 496

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 53/422 (12%), Positives = 127/422 (30%), Gaps = 53/422 (12%)

Query: 215 NLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNI--LVEAGV 272
           + ++      +      +  ++K +   N++ +  A      L   +    I  ++ AG+
Sbjct: 42  DKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGL 101

Query: 273 IPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRP 332
           IPK    L         I+ E+  AL  +A     +   +         V   A  +F  
Sbjct: 102 IPKFVSFLGK--TDCSPIQFESAWALTNIASGTSEQTKAV---------VDGGAIPAFIS 150

Query: 333 ELHSWPSLPDGTEIERTSQGPSKF--------------GANELLLGLNVSDKNANIDEAK 378
            L S    P     E+                      GA + LL L ++  + +     
Sbjct: 151 LLAS----PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL-LAVPDLSTLACG 205

Query: 379 MNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERA 438
               +  +  +             + P        Q+        +  LV +L   D   
Sbjct: 206 YLRNLTWTLSNLCR---------NKNPAPPLDAVEQI--------LPTLVRLLHHNDPEV 248

Query: 439 IARAAESIADISINEH-MRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGV 496
           +A +  +I+ ++   +    +  + G +  LVKLL  +   +      A+  +   +   
Sbjct: 249 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 308

Query: 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGL 556
            Q +   G +    + L N     ++ ++    +  I    ++   +  +  +     G+
Sbjct: 309 TQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366

Query: 557 DAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILE 616
            +        E    +       T      ++    I  ++ ++      + +     + 
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 426

Query: 617 FI 618
            I
Sbjct: 427 NI 428

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 80.8 bits (199), Expect = 4e-17
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 21/211 (9%)

Query: 107 FVQMLGL-DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEA 165
            V ML      P     A   +        +    + Q  G I   + LL+ ++     A
Sbjct: 13  AVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRG-ILKLLQLLKVQNEDVQRA 71

Query: 166 AAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRL 224
             G LR++   +   +  VAE   +  +  +L + +   E K+Q    LWNLS + K + 
Sbjct: 72  VCGALRNLVFEDNDNKLEVAELNGVPRLLQVL-KQTRDLETKKQITGLLWNLSSNDKLKN 130

Query: 225 KIANTDILPLL---------------IKSLEDENMKVKEAAGGVLANLALSKS-NHNILV 268
            +    +L L                 K+    +  +     G L N++ + +     + 
Sbjct: 131 LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMR 190

Query: 269 EA-GVIPKLAMLLKANVEGSKVIRKEARNAL 298
              G+I  L   ++  +   +   K   N +
Sbjct: 191 RCDGLIDSLVHYVRGTIADYQPDDKATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVK 247
           +E    +L    +       +   + +      + R ++     +  L++ L+ +N  V+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 248 EAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY 306
            A  G L NL      N   + E   +P+L  +LK         +K+    L  L+ +D 
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT--RDLETKKQITGLLWNLSSNDK 127

Query: 307 YRILIIEEGLVPV 319
            + L+I E L+ +
Sbjct: 128 LKNLMITEALLTL 140

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 61.9 bits (150), Expect = 8e-11
 Identities = 24/153 (15%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 698 IKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKS 757
           ++    +L+++  L  +   AA  ++  C        ++     V     I +L++ +K 
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQ------KSEARKRVNQLRGILKLLQLLKV 63

Query: 758 FSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV-EAGLAILYNL 816
            + + + A    L R +     D+   VA   G+  L++++++  +    +    +L+NL
Sbjct: 64  QNEDVQRAVCGAL-RNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122

Query: 817 SMDSENHSAIIAAGAVPALRRIVLSQRPQWTRA 849
           S + +    ++   A+  L   ++     W   
Sbjct: 123 SSNDKL-KNLMITEALLTLTENIIIPFSGWPEG 154

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 426 RLVLILGLED--ERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLA 482
           R V +L  +      I+ AA  I          R    +   I  L++LL   ++ V+ A
Sbjct: 12  RAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRA 71

Query: 483 TTHALERLSVSRGVCQ-IMEAEGVVHPLVNTLKN 515
              AL  L       +  +     V  L+  LK 
Sbjct: 72  VCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ 105

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 84.1 bits (207), Expect = 9e-17
 Identities = 70/499 (14%), Positives = 151/499 (30%), Gaps = 76/499 (15%)

Query: 93  SGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTV 152
            G+     +  + + + M   D D L +  A E L   S   K     +      +++  
Sbjct: 281 VGNQVVAREGILQMILAMATTD-DELQQRVACECLIAAS-SKKDKAKALC--EQGVDILK 336

Query: 153 NLLRSESSAACEAAAGLLRSISSINVYRDLVAEC--GAIEEITGLLTR----PSLTSEVK 206
            L  S++      A   L  + S       +     GA  ++     R    P    +++
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIR 396

Query: 207 EQSMCTLWNLSVDKKHRLKIA-NTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHN 265
             +   L  L++D + + K+  +   +  L+      N            NL  +     
Sbjct: 397 RWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456

Query: 266 I---------------------------------LVEAGVIPKLAMLLKANVEGSKVIRK 292
           +                                 L   G+   L  L K     S   ++
Sbjct: 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT---ESHNSQE 513

Query: 293 EARNALIELAKDDYYRILIIEEGLVP--VPMVGADAYKSFRPELHSWPSLPDGTEIERTS 350
                L  +      R  +++EG V   + M      K  R    +   +      E + 
Sbjct: 514 LIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573

Query: 351 QGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFP 410
            G         LL L   D  A  +   + A+   +  +  VR   I+ +          
Sbjct: 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVS------- 626

Query: 411 IDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLF-KEAGAIKYLV 469
                          ++   L  +       AA+ + ++ ++E +  +F      +K+L 
Sbjct: 627 ---------------KIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLA 671

Query: 470 KLLDHSSDAVRLATTHALERLSVSRGVC--QIMEAEGVVHPLVNTLKNLDISESLMEKTL 527
            L +   +    A   AL  ++     C  +I+     +  L   + N     ++  + +
Sbjct: 672 LLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS--PAVQHRGI 729

Query: 528 DILGRILDPSKEMKSKFYD 546
            I+  +++  +E+  K ++
Sbjct: 730 VIILNMINAGEEIAKKLFE 748

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 76.4 bits (187), Expect = 2e-14
 Identities = 66/447 (14%), Positives = 126/447 (28%), Gaps = 81/447 (18%)

Query: 110 MLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGL 169
           ++    D   R  A + L  Y     +C + +++    I+  ++L R  + +        
Sbjct: 386 LIKPGKDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTT 444

Query: 170 LRSISS---------------------------------INVYRDLVAECGAIEEITGLL 196
             ++ +                                 IN    ++A  G    +  L 
Sbjct: 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA 504

Query: 197 TRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256
              S     +E     L  +   K+ R K+     +  L++   +   K K  A   LA 
Sbjct: 505 KTES--HNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALAR 562

Query: 257 LALSKSNHNILVEAG---VIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILII 312
           + ++ +            VI  L  LL+   + + +   E+  AL  LA  ++  R  II
Sbjct: 563 IGITINPEVSFSGQRSLDVIRPLLNLLQQ--DCTALENFESLMALTNLASMNESVRQRII 620

Query: 313 EEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNA 372
           +E  V                                        A + L  L +S+   
Sbjct: 621 KEQGVSKIE-----------------------YYLMEDHLYLTRAAAQCLCNLVMSEDVI 657

Query: 373 NIDEAKMNAMVGRSRQHFLVRIGAIESEDGRK--------PQSEFPIDRQLTLLPWIDGV 424
            +            R  FL  +   E E+             S      +  L      +
Sbjct: 658 KM------FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIA-SWL 710

Query: 425 ARLVLILGLEDERAIARAAESIADI-SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLAT 483
             L  ++         R    I ++ +  E +     E   ++ L  L     D    A 
Sbjct: 711 DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770

Query: 484 THALERLSVSRGVCQIMEAEGVVHPLV 510
             A + L+ +     I  ++    P V
Sbjct: 771 EVATQCLAAAERYRIIERSDNAEIPDV 797

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 72.2 bits (176), Expect = 4e-13
 Identities = 69/520 (13%), Positives = 164/520 (31%), Gaps = 50/520 (9%)

Query: 147 CINLTVNLLRSESSAACEAAAGLLRSISSIN--VYRDLVAECGAIEEITGLLTRPSLTSE 204
                 + L +    +       + ++ +    V   +VA  G ++ I  + T       
Sbjct: 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDD--EL 305

Query: 205 VKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH 264
            +  +   L   S  K     +    +  +L +    +N  ++  A   L  L       
Sbjct: 306 QQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQD 364

Query: 265 NILVEA--GVIPKLAMLLK---ANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPV 319
             +     G   KLA   +         K IR+ A + L  L  D   +  +IE+     
Sbjct: 365 AAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIH 424

Query: 320 PMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM 379
            ++                      ++ R       +G     + L  + +   +   +M
Sbjct: 425 ALM----------------------DLARGGNQSCLYGVVTTFVNLCNAYEKQEMLP-EM 461

Query: 380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAI 439
             +   ++QH           +  +      I++++T+L        L  +   E   + 
Sbjct: 462 IELAKFAKQH---------IPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQ 512

Query: 440 ARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS---RGV 496
              A  +  +   + +R    + G +K L+++    ++  +   T AL R+ ++      
Sbjct: 513 ELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572

Query: 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGL 556
                +  V+ PL+N L+  D +     ++L  L  +   ++ ++ +          +  
Sbjct: 573 FSGQRSLDVIRPLLNLLQQ-DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY 631

Query: 557 DAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILE 616
              + L  +      +    +SE         ++  +  +  + +    +     A  L 
Sbjct: 632 LMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDEDEETATACAGALA 690

Query: 617 FITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGR 656
            IT +       I   I S LD +     + +    ++ R
Sbjct: 691 IITSVSVKCCEKI-LAIASWLDIL--HTLIANPSPAVQHR 727

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 70.6 bits (172), Expect = 1e-12
 Identities = 30/219 (13%), Positives = 71/219 (32%), Gaps = 9/219 (4%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   + +L  D   L+  +++ AL   +   +     I++    ++     L  +     
Sbjct: 582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMEDHLYLT 640

Query: 164 EAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
            AAA  L ++     V +        ++ +  L        E        L  ++     
Sbjct: 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDE--ETATACAGALAIITSVSVK 698

Query: 223 --RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL-ALSKSNHNILVEAGVIPKLAML 279
                +A    L +L   + + +  V+     ++ N+    +     L E  ++  L+ L
Sbjct: 699 CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGL 758

Query: 280 LKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVP 318
            +   +     R+ A   L     + Y  I   +   +P
Sbjct: 759 GQLPDDTRAKAREVATQCLAAA--ERYRIIERSDNAEIP 795

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 58.7 bits (141), Expect = 6e-09
 Identities = 96/678 (14%), Positives = 200/678 (29%), Gaps = 108/678 (15%)

Query: 182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCT--LWNLSVDKKHRLKIANTDILPLLIKSL 239
           L+  C  +E+           S     S+C   ++      + + +  +  I   +   L
Sbjct: 198 LLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQ-IDEYIKDKL 256

Query: 240 EDENMKVKEAAGGVLANL--ALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNA 297
              +M+ K      +  L        + ++   G++  +  +        ++ ++ A   
Sbjct: 257 LAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT---DDELQQRVACEC 313

Query: 298 LIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFG 357
           LI  +        + E+G+                                         
Sbjct: 314 LIAASSKKDKAKALCEQGVDI--------------------------------------- 334

Query: 358 ANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL 417
              L    +  +     D  ++ A+VG      L ++G+   +D            +L  
Sbjct: 335 ---LKRLYHSKN-----DGIRVRALVG------LCKLGSYGGQDAAIRPFGDGAALKLAE 380

Query: 418 LPWIDGVARLVLILGLEDERAIARAAESIADISINEHMR-MLFKEAGAIKYLVKLLDHSS 476
                   R  LI   +D+     AA+ +A ++++   +  L ++  +I  L+ L    +
Sbjct: 381 A------CRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGN 434

Query: 477 DAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDP 536
            +           L  +    +  E    +  L    K     E  ++    I  RI   
Sbjct: 435 QSCLYGVVTTFVNLCNAY---EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491

Query: 537 SKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRM 596
           + E            +      A++   + +     +  AV       GKV+    +  +
Sbjct: 492 ANE----------GITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKAL 541

Query: 597 IGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGR 656
           + +        +R A   L  I I   +++  +S   +  LD I     L   D      
Sbjct: 542 LRMALEGTEKGKRHATQALARIGI---TINPEVSFSGQRSLDVIRPLLNLLQQDCT---- 594

Query: 657 QPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDW 716
                AL+  E+ +A++  A        ++   Q I     +  +   L  +   +    
Sbjct: 595 -----ALENFESLMALTNLAS------MNESVRQRIIKEQGVSKIEYYLMEDHL-YLTRA 642

Query: 717 VAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISE 776
            A CL  L          E+ I M     + +  L    +    E   A    L  I S 
Sbjct: 643 AAQCLCNLVM-------SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV 695

Query: 777 GVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL-SMDSENHSAIIAAGAVPAL 835
            V    + +A    +  L  LI   S      G+ I+ N+ +   E    +     +  L
Sbjct: 696 SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELL 755

Query: 836 RRIVLSQRPQWTRALRLL 853
             +         +A  + 
Sbjct: 756 SGLGQLPDDTRAKAREVA 773

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 56.0 bits (134), Expect = 4e-08
 Identities = 47/272 (17%), Positives = 86/272 (31%), Gaps = 34/272 (12%)

Query: 586 KVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKA 645
           K L    +  +  +  +    ++ +A   L  +       D  I    +     +     
Sbjct: 325 KALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ-DAAIRPFGDGAALKL----- 378

Query: 646 LEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKIL 705
                ++   R   K   D +    A    A L    LD++   + I     I  L  + 
Sbjct: 379 -----AEACRRFLIKPGKDKDIRRWAADGLAYLT---LDAECKEKLIEDKASIHALMDLA 430

Query: 706 KSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREA 765
           +          V    V L C +   Q             E +P +IE  K       E 
Sbjct: 431 RGGNQ-SCLYGVVTTFVNL-CNAYEKQ-------------EMLPEMIELAKFAKQHIPEE 475

Query: 766 AVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSA 825
             ++    I++ +      +A+EG    L  L +  S+ + E    +L  +    E    
Sbjct: 476 HELDDVDFINKRI----TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGK 531

Query: 826 IIAAGAVPALRRIVLSQRPQWTR-ALRLLRNL 856
           ++  G V AL R+ L    +  R A + L  +
Sbjct: 532 VVQEGGVKALLRMALEGTEKGKRHATQALARI 563

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 72.0 bits (176), Expect = 1e-13
 Identities = 41/206 (19%), Positives = 84/206 (40%), Gaps = 14/206 (6%)

Query: 116 DPLDREQAVEALWKYSLGGKKCIDY---IMQFSGCINLTVNLLRSESSAACEAAAGLLRS 172
           D  +RE A+E L        + +D      Q SG   L    L + ++     AA L+ +
Sbjct: 53  DQQEREGALELLADLC----ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108

Query: 173 ISSINVY-RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH-RLKIANTD 230
            S      ++ V   GA+ ++  LL R +    V+ +++  +  L  +++   L+    D
Sbjct: 109 CSQNVAAIQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLD 167

Query: 231 ILPLLIKSLEDENMKVKEAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKV 289
              +L+++++ +  K+K  +  +L NL +    +   L   G++ +L  L++        
Sbjct: 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR---TEHSP 224

Query: 290 IRKEARNALIELAKDDYYRILIIEEG 315
             +    AL  L  D    +    E 
Sbjct: 225 FHEHVLGALCSLVTDFPQGVRECREP 250

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 5/157 (3%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
             L  + L      L R +A + +   S       + ++       L   L R       
Sbjct: 84  HLLVGRYLEAGAAGL-RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142

Query: 164 EAAAGLLRSISSINVY-RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
             A   +  +                   +   + +     ++K +S   L NL V    
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV--QKLKVKSAFLLQNLLVGHPE 200

Query: 223 -RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258
            +  + +  ++  L+  +  E+    E   G L +L 
Sbjct: 201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 427 LVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH 485
           L L+     +    +A  +I+ +    E   + F        L++ +      +++ +  
Sbjct: 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAF 189

Query: 486 ALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539
            L+ L V        + + G+V  LV  ++         E  L  L  ++    +
Sbjct: 190 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH--SPFHEHVLGALCSLVTDFPQ 242

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 3/116 (2%)

Query: 422 DGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVR 480
           DG + L+  +  + ++   ++A  + ++ + +   +      G ++ LV L+        
Sbjct: 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFH 226

Query: 481 LATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRIL 534
                AL  L     +GV +  E E  +  L+     L       ++ L+   ++L
Sbjct: 227 EHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL 282

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 12/163 (7%)

Query: 697 FIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIK 756
              L+ + L++      +   A  +   S      Q+       +V    A+ +L+  + 
Sbjct: 83  MHLLVGRYLEAGAA-GLRWRAAQLIGTCSQNVAAIQE-------QVLGLGALRKLLRLLD 134

Query: 757 S-FSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYN 815
                  R  A+  ++ ++               G   L++ +++   +       +L N
Sbjct: 135 RDACDTVRVKALFAISCLVR-EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN 193

Query: 816 LSM-DSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
           L +   E+   + + G V  L  +V ++        L  L +L
Sbjct: 194 LLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 9/156 (5%)

Query: 673 SAGARLLTKLLDSKQFCQ-TINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPD 731
              A+L+     +    Q  +     ++ L ++L  +     +      +   SCL    
Sbjct: 100 WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI---SCLV--- 153

Query: 732 QDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGI 791
           ++ E  +  +    +    L+  ++    + +  +   L  ++     +    + S G +
Sbjct: 154 REQEAGLL-QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMV 211

Query: 792 FPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAII 827
             LV L+    +   E  L  L +L  D        
Sbjct: 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 51.7 bits (123), Expect = 8e-07
 Identities = 44/370 (11%), Positives = 108/370 (29%), Gaps = 52/370 (14%)

Query: 215 NLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIP 274
              +   +   I  T+++  L + + + +   K+    ++ N+  SK+    L + G + 
Sbjct: 442 KEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVK 501

Query: 275 KLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPEL 334
            +   L    +  + IR     AL         R+LI                       
Sbjct: 502 IILEYLANKQDIGEPIRILGCRALT--------RMLI----------------------- 530

Query: 335 HSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRI 394
            + P L         +         ELL      D N   ++ ++           L  +
Sbjct: 531 FTNPGLIFKKYSALNAIPFLF----ELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNL 586

Query: 395 GAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEH 454
            + E+ DG +        +           + +  ++  E+        E I+++  +  
Sbjct: 587 ASSETSDGEEVCKHIVSTKV--------YWSTIENLMLDENVPLQRSTLELISNMMSHPL 638

Query: 455 MRMLF-------KEAGAIKYLVKLLDHSSDAVRLATTHALERL-SVSRGVCQ-IMEAEGV 505
                       +       LVKLL  S    + A       + +    + + ++  + +
Sbjct: 639 TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKEL 698

Query: 506 VHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPS 565
           +   +    +      L ++ L +   + +   +  +      +  ++K  DA       
Sbjct: 699 IENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKR 758

Query: 566 IELTGNVIEA 575
            +       A
Sbjct: 759 GDSGPEFSAA 768

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 28/214 (13%), Positives = 68/214 (31%), Gaps = 24/214 (11%)

Query: 89  IKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCI 148
           I  I+ +     +  +     +L         ++  +A  + +    + +         I
Sbjct: 56  IMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK------SMI 109

Query: 149 NLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQ 208
            +     R          +  L  I+  N    L+A    + +   +L+  +   E K  
Sbjct: 110 PVLFANYRIGDEKTKINVSYALEEIAKANP--MLMASI--VRDFMSMLSSKN--REDKLT 163

Query: 209 SMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILV 268
           ++  +  +  +    +       LP +I  L D +  V+ +A   L +LA          
Sbjct: 164 ALNFIEAMGENSFKYVN----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDK----- 214

Query: 269 EAGVIPKLAMLLKANVEGSKVIRKEARNALIELA 302
              +   +   L+   + S ++ K  +  +  L 
Sbjct: 215 ---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 48.3 bits (114), Expect = 1e-05
 Identities = 61/454 (13%), Positives = 136/454 (29%), Gaps = 30/454 (6%)

Query: 108 VQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSG------CINLTVNLLRSESSA 161
           + +L  D +         + W         +D +            + L   LL      
Sbjct: 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV 374

Query: 162 ACEAAAGLLRSIS--SINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD 219
             E+   +L +I+   +      + E   I  +   L+     + V+  +  TL   +  
Sbjct: 375 VKESGILVLGAIAEGCMQGMIPYLPE--LIPHLIQCLSDKK--ALVRSITCWTLSRYAHW 430

Query: 220 KKHRLKIANTD-ILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAM 278
              +        ++  L+K + D N +V+EAA    A L        +   A ++  L  
Sbjct: 431 VVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF 490

Query: 279 LLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWP 338
                   + +I  +A   L +       +   I+  + P+           +       
Sbjct: 491 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLE 550

Query: 339 SLPDGTEIERTSQGPSKFG----ANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRI 394
            L       ++   P           L+          N    +  A         L  +
Sbjct: 551 CLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 610

Query: 395 GAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIAR--AAESIADISIN 452
             +    G    +   +  +  +L         ++   ++D+    R  +   + D++  
Sbjct: 611 SGLAEGLG---GNIEQLVARSNILT--------LMYQCMQDKMPEVRQSSFALLGDLTKA 659

Query: 453 EHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNT 512
               +    A  +  L   L+    +V    T A+  +S+  G+        V+H LV  
Sbjct: 660 CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEI 719

Query: 513 LKNLDISESLMEKTLDILGRILDPSKEMKSKFYD 546
           +   +  ++L+E T   +GR+     +  +    
Sbjct: 720 INRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ 753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 73/647 (11%), Positives = 189/647 (29%), Gaps = 62/647 (9%)

Query: 149 NLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQ 208
           +  +N +   S         L+ +I+S         +   + ++  LL          E 
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASK-GELQNWPDL--LPKLCSLLDSED--YNTCEG 147

Query: 209 SMCTLWNLSVD-----KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN 263
           +   L  +  D         L      ++P  ++  +  + K++  A   +    +S++ 
Sbjct: 148 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207

Query: 264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVG 323
             +L     I  L  L     +    +RK    AL+ L +    R+L     +V   +  
Sbjct: 208 ALMLHIDSFIENLFALAG---DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR 264

Query: 324 A-DAYKSFRPE-LHSWPSL-----------PDGTEIERTSQGPSKFGANELLLGLNVSDK 370
             D  ++   E    W +L               ++        K+   +++L     + 
Sbjct: 265 TQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEG 324

Query: 371 NANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLI 430
            +  D+   +  + +     L  +  +  ++         +   L    W          
Sbjct: 325 GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPL-LKELLFHHEW---------- 373

Query: 431 LGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERL 490
                + +      +IA+    + M     E   I +L++ L      VR  T   L R 
Sbjct: 374 ---VVKESGILVLGAIAE-GCMQGMIPYLPEL--IPHLIQCLSDKKALVRSITCWTLSRY 427

Query: 491 SVS-RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPV 549
           +            + ++  L+  +  LD ++ + E        + + +      +    +
Sbjct: 428 AHWVVSQPPDTYLKPLMTELLKRI--LDSNKRVQEAACSAFATLEEEACTELVPYLAYIL 485

Query: 550 NGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQR 609
           +         +    ++ +  + I            K      +   +        D  +
Sbjct: 486 DTLVFAFSKYQ--HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK 543

Query: 610 KAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEAS 669
               +LE ++ +  ++ +      E           ++ T +       +    +  +  
Sbjct: 544 DLFPLLECLSSVATALQSGFLPYCEPVYQRCVN--LVQKTLAQAMLNNAQPDQYEAPDKD 601

Query: 670 LAISAGARL--LTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCL 727
             I A   L  L + L      Q +  ++ + L+ + ++  +P              + L
Sbjct: 602 FMIVALDLLSGLAEGLG-GNIEQLVARSNILTLMYQCMQDKMP-------EVRQSSFALL 653

Query: 728 SGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRII 774
               +      +++  + + +P L   +          A   +  I 
Sbjct: 654 GDLTKACFQ--HVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS 698

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-05
 Identities = 77/527 (14%), Positives = 152/527 (28%), Gaps = 146/527 (27%)

Query: 387 RQHFLVRIGAIESEDGRKP---QSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAA 443
              F+      + +D  K    + E  ID  +     + G  RL   L  + E  + +  
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEE--IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 444 ESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATT-HALERLSVSR-------- 494
           E +  I+    M  +  E      + ++     D  RL        + +VSR        
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 495 -GVCQIMEAEGV-VH--------PLVN-------------------TLKNLDISESLMEK 525
             + ++  A+ V +          +                      LKN +  E+++E 
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 526 TLDILGRILDPSKEMKSKFYDIPVNGSE-----KGLDAAES-------LDPSIELTGNVI 573
              +L +I            +I +         + L  ++        L        NV 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-------NVQ 254

Query: 574 EAAVSET---------TTSYGKVLDSVFIGRMIGI---------------------MKTS 603
            A              TT + +V D +       I                     +   
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 604 YPDLQRKAASILEF-ITII------DPS------------MDTIISADIESGLDAIFQQK 644
             DL R+  +     ++II        +            + TII + +   L+    +K
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRK 373

Query: 645 ALED-----TDSDIEGRQPEK------YALDIEEASLAISAGARLLTKLLDSKQFCQTIN 693
             +        + I    P        + +   +  + ++   +L    L  KQ  ++  
Sbjct: 374 MFDRLSVFPPSAHI----PTILLSLIWFDVIKSDVMVVVN---KLHKYSLVEKQPKESTI 426

Query: 694 STHFIKLLRKILKSNVP-LHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIP--- 749
           S   I L  K+   N   LH        +   +     D D   P  ++   Y  I    
Sbjct: 427 SIPSIYLELKVKLENEYALHRS-----IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 750 RLIEQIKSFSSEAREAAVIELN-RIISEGVVDSTRAVASEGGIFPLV 795
           + IE  +   +  R    + L+ R + + +   + A  + G I   +
Sbjct: 482 KNIEHPERM-TLFRM---VFLDFRFLEQKIRHDSTAWNASGSILNTL 524

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 41/218 (18%)

Query: 94  GSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVN 153
                  D+   +   M   D     R  A+E+        ++C    +     +  +  
Sbjct: 82  KICKKCEDNVFNILNNMALNDKSACVRATAIEST------AQRCKKNPIYSPKIVEQSQI 135

Query: 154 LLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTL 213
               +S+    A A  +  I+              I  +  LL  P+   +V+  +   +
Sbjct: 136 TAFDKSTNVRRATAFAISVINDK----------ATIPLLINLLKDPN--GDVRNWAAFAI 183

Query: 214 WNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVI 273
                   +  K  N+DI    ++ L+D+N +V+  A   L+             +  V+
Sbjct: 184 --------NINKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVL 225

Query: 274 PKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILI 311
             L   LK        +  +   A  EL       +L 
Sbjct: 226 SVLCDELK-----KNTVYDDIIEAAGELGDKTLLPVLD 258

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 41/225 (18%), Positives = 77/225 (34%), Gaps = 59/225 (26%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           V ++++ L  D     R  A  AL K  +G ++ ++ +++           L+ E +   
Sbjct: 21  VEMYIKNLQ-DDSYYVRRAAAYALGK--IGDERAVEPLIK----------ALKDEDAWVR 67

Query: 164 EAAAGLLRSISSINVYRDLV------------------AECG---AIEEITGLLTRPSLT 202
            AAA  L  I        L+                   + G   A+E +   L      
Sbjct: 68  RAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDED-- 125

Query: 203 SEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS 262
             V+  +   L           +I +   +  LIK+L+DE+  V+++A   L  +     
Sbjct: 126 WFVRIAAAFALG----------EIGDERAVEPLIKALKDEDGWVRQSAADALGEIG---- 171

Query: 263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYY 307
                    V   +  L +    G+   RK A N L      +++
Sbjct: 172 ------GERVRAAMEKLAE---TGTGFARKVAVNYLETHKSFNHH 207

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 11/178 (6%)

Query: 134 GKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYR---DLVAECGAIE 190
           G +  +  ++    + L ++LL             LL S+      +    ++     + 
Sbjct: 110 GSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS 169

Query: 191 EITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKI-ANTDILPLLIKSLEDENM----K 245
            +  LL        ++   +  L  L+       KI A  +    L+  + +E       
Sbjct: 170 RLMDLLADSREV--IRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGI 227

Query: 246 VKEAAGGVLANL-ALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELA 302
           V E    +L NL   + SN N   E   I ++    +   E S    ++  N  + L 
Sbjct: 228 VVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQ 285

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	858
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.98
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.97
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.94
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.9
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.9
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.89
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.84
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.83
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.78
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.77
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.74
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.74
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.72
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.68
3grl_A	651	General vesicular transport factor P115; vesicle t	99.6
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.55
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.48
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.48
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.47
3grl_A	651	General vesicular transport factor P115; vesicle t	99.47
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.46
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.42
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.37
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.35
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.31
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.3
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.27
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.25
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.22
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.05
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.03
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.98
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.96
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.93
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.9
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.9
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.78
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.68
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.31
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.15
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.07
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.97
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.97
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.92
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.9
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.89
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.89
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.81
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.7
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.49
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.41
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.39
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.22
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.02
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.97
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.73
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	96.59
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.94
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.57
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	94.6
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	93.98
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.87
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.45
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	92.53
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	92.27
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	91.32
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	89.81
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	89.3
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	88.28
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	87.55
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	87.48
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	87.39
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	87.08
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	86.42
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	82.37

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.3e-41  Score=397.97  Aligned_cols=507  Identities=15%  Similarity=0.140  Sum_probs=399.0

Q ss_pred             HhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcH
Q 003008          110 MLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAI  189 (858)
Q Consensus       110 lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i  189 (858)
                      .+. +.+.+....|.+++.++..+.......++...|+++.|+.++.++++.++++|++++.+++.+.++|+.+.+.|+ 
T Consensus       255 ~~~-~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-  332 (810)
T 3now_A          255 KLL-APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-  332 (810)
T ss_dssp             HHS-SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-
T ss_pred             Hhc-cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-
Confidence            554 677778899999999999888766556666789999999999999999999999999999999899999999886 


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHhccCc--chHHHHHhCCC----HHHHHHHHccC--CHHHHHHHHHHHHHHcCCc
Q 003008          190 EEITGLLTRPSLTSEVKEQSMCTLWNLSVDK--KHRLKIANTDI----LPLLIKSLEDE--NMKVKEAAGGVLANLALSK  261 (858)
Q Consensus       190 ~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~----i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~~  261 (858)
                      |.|+.++++.  ++.++..|+.+|++++...  +.+....+.|.    ++.|+++|.++  ++++++.|+|+|.+|+..+
T Consensus       333 ~~L~~Ll~s~--~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~  410 (810)
T 3now_A          333 DILKRLYHSK--NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA  410 (810)
T ss_dssp             HHHHHHTTCS--CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc
Confidence            9999999987  8999999999999997432  33334444555    45677788887  8899999999999999999


Q ss_pred             CchHHHHh-CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCC
Q 003008          262 SNHNILVE-AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSL  340 (858)
Q Consensus       262 ~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~  340 (858)
                      +.|..++. .|++|.||++|++++   +.++..|+++|.|++...+.      ...++. +..+..|....         
T Consensus       411 ~vk~~lv~d~g~Ip~LV~LL~s~d---~~i~~~al~~L~NLt~~~d~------q~~~~~-l~~la~~s~~~---------  471 (810)
T 3now_A          411 ECKEKLIEDKASIHALMDLARGGN---QSCLYGVVTTFVNLCNAYEK------QEMLPE-MIELAKFAKQH---------  471 (810)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHTTCSCC------CCCCCS-CGGGTTTTCCS---------
T ss_pred             HHHHHHHHccchHHHHHHHhCCCC---hHHHHHHHHHHHHHcCCchh------hhhhHH-HHHHHHHhhcc---------
Confidence            99998874 689999999998753   34889999999999985432      144453 55542111000         


Q ss_pred             CCcchhhcccCCchhhHHHHHHhccCCCCCCccchH-HHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccc
Q 003008          341 PDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDE-AKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLP  419 (858)
Q Consensus       341 ~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~-~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~  419 (858)
                                              .  ... ...+. ..+.                                .+.+.+.
T Consensus       472 ------------------------v--~~~-~~ld~~~~v~--------------------------------~r~~~Vv  492 (810)
T 3now_A          472 ------------------------I--PEE-HELDDVDFIN--------------------------------KRITVLA  492 (810)
T ss_dssp             ------------------------C--CCS-SCHHHHHHHH--------------------------------HHHHHHH
T ss_pred             ------------------------C--ccc-cccccHHHHH--------------------------------HHHHHHH
Confidence                                    0  000 00000 0000                                0002334


Q ss_pred             ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHH
Q 003008          420 WIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQI  499 (858)
Q Consensus       420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~  499 (858)
                      ..|+++.|+.+|+++++.++.+|+|+|+|++.++++|..+++.|++++|+.+|.++++..++.|+++|.||+.+.+....
T Consensus       493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~  572 (810)
T 3now_A          493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS  572 (810)
T ss_dssp             HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999863221111


Q ss_pred             H---HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHh
Q 003008          500 M---EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAA  576 (858)
Q Consensus       500 l---~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L  576 (858)
                      +   ...|++|+|+.+|. ++.+...+..++++|.||+..                                        
T Consensus       573 ~~~~~~~~aIppLv~LL~-~~~~~l~~~eAl~AL~NLa~~----------------------------------------  611 (810)
T 3now_A          573 FSGQRSLDVIRPLLNLLQ-QDCTALENFESLMALTNLASM----------------------------------------  611 (810)
T ss_dssp             TTTHHHHHTHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTS----------------------------------------
T ss_pred             hcchhhhcHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhcC----------------------------------------
Confidence            1   12358999999987 333445556788888888761                                        


Q ss_pred             hccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCC
Q 003008          577 VSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGR  656 (858)
Q Consensus       577 ~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~  656 (858)
                        .+..+ ..+.+.|++|.|+.+|.+.++.+|+.|+++|+|++.+++.+..+                            
T Consensus       612 --~d~~~-~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~----------------------------  660 (810)
T 3now_A          612 --NESVR-QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMF----------------------------  660 (810)
T ss_dssp             --CHHHH-HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHH----------------------------
T ss_pred             --CHHHH-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHH----------------------------
Confidence              11234 67888999999999999999999999999999998755432222                            


Q ss_pred             CCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCc
Q 003008          657 QPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFEN  736 (858)
Q Consensus       657 ~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  736 (858)
                                                                                                      
T Consensus       661 --------------------------------------------------------------------------------  660 (810)
T 3now_A          661 --------------------------------------------------------------------------------  660 (810)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHh-cCCchHHHHHhhcCChHHHHHHHHHHHh
Q 003008          737 PINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVAS-EGGIFPLVKLIEEGSNRAVEAGLAILYN  815 (858)
Q Consensus       737 ~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~n  815 (858)
                           +...|+++.|+.++.+++.++|++|++||+||+.++.. +++.+++ .|++++|+++|.++++++|..|+++|+|
T Consensus       661 -----v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~-~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N  734 (810)
T 3now_A          661 -----EGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK-CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILN  734 (810)
T ss_dssp             -----HSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             -----HhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence                 00135689999999999999999999999999986544 7888888 9999999999999999999999999999


Q ss_pred             hhcC-ccchHHHHHcCchHHHHHhhhcC---ChhH-HHHHHHHhcC
Q 003008          816 LSMD-SENHSAIIAAGAVPALRRIVLSQ---RPQW-TRALRLLRNL  856 (858)
Q Consensus       816 L~~~-~~~~~~i~~~g~v~~L~~ll~~~---~~~~-~~al~~l~~l  856 (858)
                      |+.. ++....|.+.|+++.|..++..+   ++.+ +.|+.+|.++
T Consensus       735 L~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l  780 (810)
T 3now_A          735 MINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA  780 (810)
T ss_dssp             HHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence            9875 56678899999999999999766   4566 8888888764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.8e-40  Score=386.72  Aligned_cols=505  Identities=17%  Similarity=0.163  Sum_probs=415.8

Q ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc
Q 003008           99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN  177 (858)
Q Consensus        99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~  177 (858)
                      .+.|+++.|+.+|+ ++|+.+|..|+.+|.+++.++.+ +..++...|+++.|+++|.++ +++++..++.+|++|+.++
T Consensus        14 ~~~~~i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~   91 (529)
T 1jdh_A           14 LATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             ---CHHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHH-HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred             hhHhhHHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCcc-HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence            46899999999998 89999999999999999987765 346664459999999999865 8899999999999999998


Q ss_pred             hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008          178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN  256 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n  256 (858)
                      +++..+.+.|++|.|+++|+++  ++.++..++++|.|++.+ +..+..+++.|+++.|+++++++++.++..++.+|.+
T Consensus        92 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~  169 (529)
T 1jdh_A           92 EGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  169 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999976 4568888899999999999999999999999999999


Q ss_pred             HcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCC
Q 003008          257 LALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELH  335 (858)
Q Consensus       257 L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~  335 (858)
                      ++.. ++++..+.+.|+++.|++++++++  ....++.+..+|++++.+++++..+++.|+++ +|++++          
T Consensus       170 la~~~~~~~~~i~~~~~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~-~L~~ll----------  236 (529)
T 1jdh_A          170 LAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHL----------  236 (529)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHH-HHHTTT----------
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHhCC--hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHH-HHHHHH----------
Confidence            9985 678888999999999999998764  45577789999999999999999999999999 599874          


Q ss_pred             CCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc
Q 003008          336 SWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL  415 (858)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~  415 (858)
                                  +.++...+..++++|.|++.+...                                            
T Consensus       237 ------------~~~~~~~~~~a~~~L~~l~~~~~~--------------------------------------------  260 (529)
T 1jdh_A          237 ------------TDPSQRLVQNCLWTLRNLSDAATK--------------------------------------------  260 (529)
T ss_dssp             ------------TSSCHHHHHHHHHHHHHHHTTCTT--------------------------------------------
T ss_pred             ------------hCCChHHHHHHHHHHHHHhcCChh--------------------------------------------
Confidence                        112225566789999988644310                                            


Q ss_pred             ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcC--CcHHHHHHHHHHHHHhhc
Q 003008          416 TLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDH--SSDAVRLATTHALERLSV  492 (858)
Q Consensus       416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~--~~~~v~~~a~~aL~~Ls~  492 (858)
                       .....+.++.|+.+|.+++++++..|+++|++++. +++++..+.+.|+++.|+.+|.+  +++.++..++++|+||+.
T Consensus       261 -~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~  339 (529)
T 1jdh_A          261 -QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             -CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             -hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence             00113588999999999999999999999999775 56799999999999999999975  348999999999999988


Q ss_pred             C-hh---HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHH
Q 003008          493 S-RG---VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIEL  568 (858)
Q Consensus       493 ~-~~---~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~  568 (858)
                      . ++   .+..+.+.|+++.|+.++.++. +..+++.++++|+|++..                                
T Consensus       340 ~~~~~~~~~~~i~~~~~i~~L~~lL~~~~-~~~v~~~a~~~l~nl~~~--------------------------------  386 (529)
T 1jdh_A          340 RHQEAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLALC--------------------------------  386 (529)
T ss_dssp             SSTTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHTTS--------------------------------
T ss_pred             CCchHHHHHHHHHHcCChhHHHHHhcccc-chHHHHHHHHHHHHHhcC--------------------------------
Confidence            3 33   5788999999999999998443 457888899999999861                                


Q ss_pred             HHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccC
Q 003008          569 TGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALED  648 (858)
Q Consensus       569 ~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~  648 (858)
                                 ...+ ..+.+.|++|.|+++|.+.++.+|..|+|++.|..        +.                   
T Consensus       387 -----------~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~--------~~-------------------  427 (529)
T 1jdh_A          387 -----------PANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ--------FV-------------------  427 (529)
T ss_dssp             -----------GGGH-HHHHHTTHHHHHHHHHHHHHHHHC-------------------CB-------------------
T ss_pred             -----------hhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchh--------hh-------------------
Confidence                       1223 56778899999999999888888888888776521        10                   


Q ss_pred             CCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccC
Q 003008          649 TDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLS  728 (858)
Q Consensus       649 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~  728 (858)
                                                                                                      
T Consensus       428 --------------------------------------------------------------------------------  427 (529)
T 1jdh_A          428 --------------------------------------------------------------------------------  427 (529)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHH
Q 003008          729 GPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEA  808 (858)
Q Consensus       729 ~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~  808 (858)
                                     . |+          ...+++..++.+|++|+..  .++...+.+.|++++|+++|.+++++++..
T Consensus       428 ---------------~-~~----------~~~~i~~~~~~al~~L~~~--~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~  479 (529)
T 1jdh_A          428 ---------------E-GV----------RMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRV  479 (529)
T ss_dssp             ---------------T-TB----------CHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred             ---------------c-cc----------cHHHHHHHHHHHHHHHhcC--chHHHHHhccCCccHHHHHHcCCchHHHHH
Confidence                           0 00          0122445677888888753  346678999999999999999999999999


Q ss_pred             HHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcCC
Q 003008          809 GLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNLP  857 (858)
Q Consensus       809 a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l~  857 (858)
                      |+.+|.||+.+++.+..+.+.|+++.|..++.++++.+ .+|.++|.+++
T Consensus       480 a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~  529 (529)
T 1jdh_A          480 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence            99999999988888899999999999999999999999 99999998764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-40  Score=393.27  Aligned_cols=532  Identities=14%  Similarity=0.141  Sum_probs=414.2

Q ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc
Q 003008           99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN  177 (858)
Q Consensus        99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~  177 (858)
                      ...|+++.|+.+|+ ++++.+|..|+.+|.+++.+..+. ..++...|+++.|++.|.++ +++++..|+.+|.+|+.++
T Consensus        11 ~~~g~i~~Lv~lL~-~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~   88 (644)
T 2z6h_A           11 LATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   88 (644)
T ss_dssp             -CTTTHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred             hhhchHHHHHHHHc-CCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence            57899999999998 899999999999999999987753 45553458999999999876 8999999999999999998


Q ss_pred             hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008          178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN  256 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n  256 (858)
                      +++..+.+.|+++.|+++|+++  ++.++..|+++|.||+.+ +..+..+++.|+++.|+++|+++++.++..++.+|.+
T Consensus        89 ~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  166 (644)
T 2z6h_A           89 EGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  166 (644)
T ss_dssp             HHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999976 4568888899999999999999999999999999999


Q ss_pred             HcC-CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCC
Q 003008          257 LAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELH  335 (858)
Q Consensus       257 L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~  335 (858)
                      ++. +++++..+.+.|+++.|++++++++  ....++.++.+|+|++.++.++..+++.|+++ +|++++          
T Consensus       167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~-~L~~ll----------  233 (644)
T 2z6h_A          167 LAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHL----------  233 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHH-HHHTTT----------
T ss_pred             HHhcCcHHHHHHHHcCChHHHHHHHHcCC--hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHH-HHHHHH----------
Confidence            997 6788889999999999999998753  45578899999999999999999999999999 599874          


Q ss_pred             CCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc
Q 003008          336 SWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL  415 (858)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~  415 (858)
                                  +..+...+..++++|.|++.....                                            
T Consensus       234 ------------~~~~~~~~~~a~~~L~nL~~~~~~--------------------------------------------  257 (644)
T 2z6h_A          234 ------------TDPSQRLVQNCLWTLRNLSDAATK--------------------------------------------  257 (644)
T ss_dssp             ------------TCSCHHHHHHHHHHHHHHGGGCTT--------------------------------------------
T ss_pred             ------------hcCCHHHHHHHHHHHHHHhhcchh--------------------------------------------
Confidence                        122235566799999998643210                                            


Q ss_pred             ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCC--cHHHHHHHHHHHHHhhc
Q 003008          416 TLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHS--SDAVRLATTHALERLSV  492 (858)
Q Consensus       416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~  492 (858)
                       .....+.++.|+.+|.+++++++..|+++|++++. +++++..+.+.|+++.|+.+|.+.  .+.++..|+++|+||+.
T Consensus       258 -~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          258 -QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             -CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             -hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence             01113578999999999999999999999999764 578899999999999999999863  37999999999999987


Q ss_pred             C-h---hHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHH
Q 003008          493 S-R---GVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIEL  568 (858)
Q Consensus       493 ~-~---~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~  568 (858)
                      . +   ..+..+.+.|+++.|+.+|..+ .+..+++.++++|+|++.   ....+..+.+.++++.|+.++.+.+.+++.
T Consensus       337 ~~~~~~~~q~~v~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nLa~---~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~  412 (644)
T 2z6h_A          337 RHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLAL---CPANHAPLREQGAIPRLVQLLVRAHQDTQR  412 (644)
T ss_dssp             SSTTHHHHHHHHHHTTHHHHHHHTTSTT-CCHHHHHHHHHHHHHHTT---SGGGHHHHHHTTHHHHHHHHHHHHHHHHTT
T ss_pred             CCchHHHHHHHHHHccChHHHHHHhCcc-CchHHHHHHHHHHHHHcc---CHHHHHHHHHcCCHHHHHHHHhccchhhhh
Confidence            3 3   3466788999999999999843 346899999999999997   222223344444455555555444444444


Q ss_pred             HHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhcc
Q 003008          569 TGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALE  647 (858)
Q Consensus       569 ~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~  647 (858)
                      .++ ++.+-.         +. .|+          .+..++..++.+|.+++.+...                       
T Consensus       413 ~a~~al~n~~---------~~-~~~----------~~~~v~~~a~~aL~~La~~~~~-----------------------  449 (644)
T 2z6h_A          413 RTSMGGTQQQ---------FV-EGV----------RMEEIVEGCTGALHILARDVHN-----------------------  449 (644)
T ss_dssp             C-------------------C-CSS----------CHHHHHHHHHHHHHHHTTSHHH-----------------------
T ss_pred             Hhhhccccch---------hc-ccc----------cHHHHHHHHHHHHHHHhcCHHH-----------------------
Confidence            433 222200         00 000          1122333344444333321100                       


Q ss_pred             CCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhccc
Q 003008          648 DTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCL  727 (858)
Q Consensus       648 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~  727 (858)
                                                                                                      
T Consensus       450 --------------------------------------------------------------------------------  449 (644)
T 2z6h_A          450 --------------------------------------------------------------------------------  449 (644)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHH
Q 003008          728 SGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE  807 (858)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~  807 (858)
                                 +..+.+.|++++|+++|.+++++++..|+++|.+++..  .+.+..+.+.|++++|++++.++++++|.
T Consensus       450 -----------~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~vr~  516 (644)
T 2z6h_A          450 -----------RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVAT  516 (644)
T ss_dssp             -----------HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred             -----------HHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCCCHHHHH
Confidence                       00122567899999999999999999999999999854  33667889999999999999999999999


Q ss_pred             HHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH
Q 003008          808 AGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW  846 (858)
Q Consensus       808 ~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~  846 (858)
                      .|+.+|.+|+.+.... ...+. ++..+..++.+.+..+
T Consensus       517 ~A~~aL~~l~~~~~~~-~~~~~-~~~il~~~~~~~~~~w  553 (644)
T 2z6h_A          517 YAAAVLFRMSEDKPQD-YKKRL-SVELTSSLFRTEPMAW  553 (644)
T ss_dssp             HHHHHHHHHTTTSCHH-HHHHH-HHHHHHHHSCCSCGGG
T ss_pred             HHHHHHHHHhccCcHh-hhccc-chHHHHHHHhCCCccc
Confidence            9999999999886422 11111 3677778888877776

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2e-39  Score=392.19  Aligned_cols=534  Identities=16%  Similarity=0.157  Sum_probs=402.4

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCch
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSINV  178 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~~  178 (858)
                      ..|+++.|+.+|. ++++.+|..|+.+|.+++.+..+. ..++...|+++.|+++|+++ +++++..|+.+|.+|+..++
T Consensus       148 ~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~-~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~  225 (780)
T 2z6g_A          148 ATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE  225 (780)
T ss_dssp             HHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHH-HHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH
T ss_pred             HhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhH-HHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence            3789999999998 889999999999999999876653 45553348999999999866 89999999999999999988


Q ss_pred             hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008          179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL  257 (858)
Q Consensus       179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL  257 (858)
                      ++..+.+.|+|+.|+++|+++  ++.++..|+++|.||+.+ +..+..+++.|+++.|+++|++++..++..++.+|.++
T Consensus       226 ~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L  303 (780)
T 2z6g_A          226 GLLAIFKSGGIPALVNMLGSP--VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  303 (780)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            999999999999999999998  999999999999999976 45678888999999999999999999999999999999


Q ss_pred             cCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCC
Q 003008          258 ALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHS  336 (858)
Q Consensus       258 ~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~  336 (858)
                      +.. ++++..+++.|+++.|+.+++.++  ....++.++.+|++|+.++.++..+++.|+++ .|+.++           
T Consensus       304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~-~Ll~lL-----------  369 (780)
T 2z6g_A          304 AYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHL-----------  369 (780)
T ss_dssp             HTTCHHHHHHHHTTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHH-HHGGGT-----------
T ss_pred             hcCChHHHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHHHhhcChHHHHHHHHhchHH-HHHHHH-----------
Confidence            974 678888999999999999998753  44567789999999999999999999999999 499874           


Q ss_pred             CCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccc
Q 003008          337 WPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLT  416 (858)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~  416 (858)
                                 ...+...+..++++|.+++.....                                             
T Consensus       370 -----------~~~~~~~~~~a~~~L~~L~~~~~~---------------------------------------------  393 (780)
T 2z6g_A          370 -----------TDPSQRLVQNCLWTLRNLSDAATK---------------------------------------------  393 (780)
T ss_dssp             -----------TCSCHHHHHHHHHHHHHHHTTCTT---------------------------------------------
T ss_pred             -----------cCCchHHHHHHHHHHHHHhccchh---------------------------------------------
Confidence                       111224566688888888643310                                             


Q ss_pred             cccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCC-c-HHHHHHHHHHHHHhhc-
Q 003008          417 LLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHS-S-DAVRLATTHALERLSV-  492 (858)
Q Consensus       417 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~-~-~~v~~~a~~aL~~Ls~-  492 (858)
                      .....+.++.|+.+|++++++++..|+++|++++. +++++..+++.|+++.|+.+|.+. + ..++..|+++|+||+. 
T Consensus       394 ~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~  473 (780)
T 2z6g_A          394 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  473 (780)
T ss_dssp             CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            01113478999999999999999999999999764 568899999999999999999763 3 5999999999999987 


Q ss_pred             Chh---HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHH
Q 003008          493 SRG---VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELT  569 (858)
Q Consensus       493 ~~~---~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~  569 (858)
                      +++   .+..+.+.|+++.|+.+|..++ +..+++.++++|+|++.   ....+..+.+.                    
T Consensus       474 ~~~~~~~~~~v~~~~~l~~L~~lL~~~~-~~~v~~~A~~aL~nLa~---~~~~~~~i~~~--------------------  529 (780)
T 2z6g_A          474 HQDAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLAL---CPANHAPLREQ--------------------  529 (780)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHHS---SHHHHHHHHHT--------------------
T ss_pred             CchHHHHHHHHHHcCCHHHHHHHhcCCC-hHHHHHHHHHHHHHHhc---CHHHHHHHHHC--------------------
Confidence            333   3668889999999999998443 45899999999999997   22222233333                    


Q ss_pred             HHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHH--hhcCCcchHHHHhhchHHHHHHHHHhhhcc
Q 003008          570 GNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEF--ITIIDPSMDTIISADIESGLDAIFQQKALE  647 (858)
Q Consensus       570 a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~--l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~  647 (858)
                                           |+++.|+++|.+.+.++++.++|++.+  +...... ..+                   
T Consensus       530 ---------------------g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~-~~v-------------------  568 (780)
T 2z6g_A          530 ---------------------GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM-EEI-------------------  568 (780)
T ss_dssp             ---------------------THHHHHHHHHHHHHHHHHHTTC------CCSTTCCH-HHH-------------------
T ss_pred             ---------------------CCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh-HHH-------------------
Confidence                                 445555555555444555555554443  1110000 000                   


Q ss_pred             CCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhccc
Q 003008          648 DTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCL  727 (858)
Q Consensus       648 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~  727 (858)
                                              .....+.|..+....                                         
T Consensus       569 ------------------------~~~a~~aL~~La~~~-----------------------------------------  583 (780)
T 2z6g_A          569 ------------------------VEACTGALHILARDI-----------------------------------------  583 (780)
T ss_dssp             ------------------------HHHHHHHHHHHTTSH-----------------------------------------
T ss_pred             ------------------------HHHHHHHHHHHhcCh-----------------------------------------
Confidence                                    000011111110000                                         


Q ss_pred             CCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHH
Q 003008          728 SGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE  807 (858)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~  807 (858)
                               ..+..+...|++++|+.+|.+++++++..|+.+|.+|+..  .+.+..+.+.|++++|+++++++++++|+
T Consensus       584 ---------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~  652 (780)
T 2z6g_A          584 ---------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVAT  652 (780)
T ss_dssp             ---------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred             ---------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence                     0001123567999999999999999999999999999743  33666899999999999999999999999


Q ss_pred             HHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhHHHHH
Q 003008          808 AGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRAL  850 (858)
Q Consensus       808 ~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~~al  850 (858)
                      .|+.+|.+|+.+.+....  ...++..+..++.+.+..+..+-
T Consensus       653 ~A~~aL~~l~~~~~~~~~--~~l~~~ll~~l~~~~~~~w~~~~  693 (780)
T 2z6g_A          653 YAAAVLFRMSEDKPQDYK--KRLSVELTSSLFRTEPMTWNETG  693 (780)
T ss_dssp             HHHHHHHHHHTTSCTTHH--HHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHcCChHhhh--ccccHHHHHHHHhCCCcccccCc
Confidence            999999999988763321  11256777888888887774433

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=4.6e-39  Score=388.95  Aligned_cols=537  Identities=18%  Similarity=0.139  Sum_probs=407.3

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD  181 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~  181 (858)
                      .+++.++..|. +++..+|..++..+...     +  +..+ ..|+++.|+.+|.++++.+|+.|+.+|.+|+...+++.
T Consensus       115 ~~i~~lv~~L~-~~~~~~r~~a~~~l~~~-----~--~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~  185 (780)
T 2z6g_A          115 SAHPTNVQRLA-EPSQMLKHAVVNLINYQ-----D--DAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH  185 (780)
T ss_dssp             ------------CCSCHHHHHHHHHHHHH-----H--HHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             ccHHHHHHHhc-CccHHHHHHHHHHHHhh-----h--HHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence            45899999997 66667888887777643     1  1344 38999999999999999999999999999999888888


Q ss_pred             HHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008          182 LVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS  260 (858)
Q Consensus       182 ~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~  260 (858)
                      .+.+ .|+++.|+++|++.. ++.+++.|+.+|.+|+.+++++..+.+.|+++.|+++|+++++.++..|+++|.||+..
T Consensus       186 ~i~~~~~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~  264 (780)
T 2z6g_A          186 AIMRSPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH  264 (780)
T ss_dssp             HHTTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence            8886 589999999998543 89999999999999999999999999999999999999999999999999999999987


Q ss_pred             c-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCC
Q 003008          261 K-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWP  338 (858)
Q Consensus       261 ~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~  338 (858)
                      . ..+..+.+.|+++.|+++|++.   ...+++.++.+|++++. +++++..+++.|+++. |++++             
T Consensus       265 ~~~~~~~v~~~g~v~~Lv~lL~~~---~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~-Lv~lL-------------  327 (780)
T 2z6g_A          265 QEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQESKLIILASGGPQA-LVNIM-------------  327 (780)
T ss_dssp             STTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHH-HHHHH-------------
T ss_pred             ChhhHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH-HHHHH-------------
Confidence            4 5666778899999999999874   34578899999999997 6899999999999994 99864             


Q ss_pred             CCCCcchhhcccCC-chhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccc
Q 003008          339 SLPDGTEIERTSQG-PSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL  417 (858)
Q Consensus       339 ~~~~~~~~~~~~~~-~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~  417 (858)
                               +.++. ..+..++.+|++|+....++                                           ..
T Consensus       328 ---------~~~~~~~~~~~a~~aL~~Ls~~~~~~-------------------------------------------~~  355 (780)
T 2z6g_A          328 ---------RTYTYEKLLWTTSRVLKVLSVCSSNK-------------------------------------------PA  355 (780)
T ss_dssp             ---------TTCCCHHHHHHHHHHHHHHHTSTTHH-------------------------------------------HH
T ss_pred             ---------hcCCHHHHHHHHHHHHHHhhcChHHH-------------------------------------------HH
Confidence                     22221 23344788888887543210                                           12


Q ss_pred             ccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhH
Q 003008          418 LPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGV  496 (858)
Q Consensus       418 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~  496 (858)
                      +...++++.|+.++.+++..++..|+++|.+++......  ....++++.|+.+|+++++.++..|+++|++|+. ++++
T Consensus       356 i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~  433 (780)
T 2z6g_A          356 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN  433 (780)
T ss_dssp             HHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            222457899999999999999999999999976533221  1125789999999999999999999999999998 5788


Q ss_pred             HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc-ccccccccCcCcHHHHHhhcCCCh-hHHHHHH-HH
Q 003008          497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM-KSKFYDIPVNGSEKGLDAAESLDP-SIELTGN-VI  573 (858)
Q Consensus       497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~i~~~~~i~~Li~ll~s~d~-~v~~~a~-~l  573 (858)
                      +..+.+.|+++.|+.+|..++..+.+++.+.++|++|+....+. ..+..+...++++.|++++.+++. .++..++ +|
T Consensus       434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL  513 (780)
T 2z6g_A          434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI  513 (780)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence            99999999999999999854444689999999999998632221 123456778999999999998775 8999999 99


Q ss_pred             HHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCc
Q 003008          574 EAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDI  653 (858)
Q Consensus       574 ~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~  653 (858)
                      .|++.....+          ..+.                                   ..+++..|+            
T Consensus       514 ~nLa~~~~~~----------~~i~-----------------------------------~~g~i~~Lv------------  536 (780)
T 2z6g_A          514 RNLALCPANH----------APLR-----------------------------------EQGAIPRLV------------  536 (780)
T ss_dssp             HHHHSSHHHH----------HHHH-----------------------------------HTTHHHHHH------------
T ss_pred             HHHhcCHHHH----------HHHH-----------------------------------HCCCHHHHH------------
Confidence            9997543322          0110                                   011122222            


Q ss_pred             CCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCC
Q 003008          654 EGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQD  733 (858)
Q Consensus       654 ~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~  733 (858)
                                                 .++..........+.                    |   ++.           
T Consensus       537 ---------------------------~lL~~~~~~~~~~aa--------------------~---al~-----------  555 (780)
T 2z6g_A          537 ---------------------------QLLVRAHQDTQRRTS--------------------M---GGT-----------  555 (780)
T ss_dssp             ---------------------------HHHHHHHHHHHHTTC--------------------------------------
T ss_pred             ---------------------------HHHHhcchhHHHHHh--------------------h---ccc-----------
Confidence                                       111110000000000                    0   000           


Q ss_pred             CCccchhhhhhhcchHHHHHHhc-cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHH
Q 003008          734 FENPINMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAI  812 (858)
Q Consensus       734 ~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~a  812 (858)
                        +.            +   +.. ....++++.++.||++|+..  .++...+.+.|++++|+++|.++++.++..|+.+
T Consensus       556 --nq------------~---~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~a  616 (780)
T 2z6g_A          556 --QQ------------Q---FVEGVRMEEIVEACTGALHILARD--IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV  616 (780)
T ss_dssp             ----------------C---CSTTCCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             --cc------------h---hhcccChHHHHHHHHHHHHHHhcC--hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence              00            0   011 12357899999999999853  3366689999999999999999999999999999


Q ss_pred             HHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008          813 LYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL  856 (858)
Q Consensus       813 L~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l  856 (858)
                      |+||+.+++.+..+.+.|+++.|.+++.++++.+ ..|.++|.++
T Consensus       617 L~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l  661 (780)
T 2z6g_A          617 LCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  661 (780)
T ss_dssp             HHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999899999999999999999999999999 8888888765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-39  Score=381.73  Aligned_cols=446  Identities=15%  Similarity=0.117  Sum_probs=366.3

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc--
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN--  177 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~--  177 (858)
                      .+|+++.|+.++. +++..++..|++++.+++.+.. +++.++ +.|+ +.|+.+++++++.++..|+.+|++++...  
T Consensus       288 ~~G~v~~li~Ll~-s~~~~~q~~A~~al~~aa~~~~-~R~~I~-~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~  363 (810)
T 3now_A          288 REGILQMILAMAT-TDDELQQRVACECLIAASSKKD-KAKALC-EQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQ  363 (810)
T ss_dssp             TTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHTTSHH-HHHTTH-HHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT
T ss_pred             ccchHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCcH-HHHHHH-HcCc-HHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            7799999999998 8898999999999999888744 444555 6765 99999999999999999999999997532  


Q ss_pred             hhHHHHHhcCc----HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH-hCCCHHHHHHHHccCCHHHHHHHHH
Q 003008          178 VYRDLVAECGA----IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA-NTDILPLLIKSLEDENMKVKEAAGG  252 (858)
Q Consensus       178 ~~~~~i~~~g~----i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~a~~  252 (858)
                      +....+.+.|.    ++.++++|.++..++++++.|+++|.+|+.+++.|..++ +.|++|.|+++|+++++.++..+++
T Consensus       364 d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~  443 (810)
T 3now_A          364 DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVT  443 (810)
T ss_dssp             TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHH
Confidence            33323334454    566777888753367899999999999999999999988 5799999999999999999999999


Q ss_pred             HHHHHcCCcC------------------------------ch---HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 003008          253 VLANLALSKS------------------------------NH---NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI  299 (858)
Q Consensus       253 ~L~nL~~~~~------------------------------~~---~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~  299 (858)
                      +|.||+...+                              .+   ..+++.|++|.|+++|+++   ++.+++.|+++|.
T Consensus       444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~---s~~vqe~Aa~aL~  520 (810)
T 3now_A          444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE---SHNSQELIARVLN  520 (810)
T ss_dssp             HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC---CHHHHHHHHHHHH
T ss_pred             HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence            9999998542                              12   4678999999999999886   4669999999999


Q ss_pred             HHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHH
Q 003008          300 ELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM  379 (858)
Q Consensus       300 nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~  379 (858)
                      |++.++++|..++++|+++ +|+.++                      +.++...+..|+++|.|++.+.+..       
T Consensus       521 NLA~d~~~r~~Vv~~Gaip-~Lv~LL----------------------~s~~~~~k~~Aa~AL~nL~~~~~p~-------  570 (810)
T 3now_A          521 AVCGLKELRGKVVQEGGVK-ALLRMA----------------------LEGTEKGKRHATQALARIGITINPE-------  570 (810)
T ss_dssp             HHHTSHHHHHHHHHTTHHH-HHHHHH----------------------HSSCHHHHHHHHHHHHHHHHHSCHH-------
T ss_pred             HHcCCHHHHHHHHHCCCHH-HHHHHH----------------------ccCCHHHHHHHHHHHHHHhcCCChh-------
Confidence            9999999999999999999 799974                      3333356777999999996443110       


Q ss_pred             hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCC-CHHHHHHHHHHHHHhcC-ChhhHH
Q 003008          380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLE-DERAIARAAESIADISI-NEHMRM  457 (858)
Q Consensus       380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~l~~-~~~~~~  457 (858)
                                                       ..|......+++++|+.+|.++ +...+..|+++|.|++. +++++.
T Consensus       571 ---------------------------------~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~  617 (810)
T 3now_A          571 ---------------------------------VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ  617 (810)
T ss_dssp             ---------------------------------HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             ---------------------------------hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence                                             0000000124899999999876 44556799999999775 578899


Q ss_pred             HHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH-cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCC
Q 003008          458 LFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA-EGVVHPLVNTLKNLDISESLMEKTLDILGRILDP  536 (858)
Q Consensus       458 ~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~-~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~  536 (858)
                      .+++.|+++.|+.||.++++.+|+.|+++|+||+.+++.+..+.+ .|+++.|+.++..+  +..+++.|+++|+|++..
T Consensus       618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~~  695 (810)
T 3now_A          618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAIITSV  695 (810)
T ss_dssp             HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999998888888885 78999999999854  489999999999999862


Q ss_pred             Cccccccccccc-CcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCC---CHHHHHHH
Q 003008          537 SKEMKSKFYDIP-VNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTS---YPDLQRKA  611 (858)
Q Consensus       537 ~~~~~~~~~i~~-~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~---~~~v~~~a  611 (858)
                      +  ......+.. .+++++|+.++.++|.+++..|+ ++.|+..........+.+.|++++|+.+++.+   +..+.+.|
T Consensus       696 s--~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A  773 (810)
T 3now_A          696 S--VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA  773 (810)
T ss_dssp             C--HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred             C--HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence            1  223344555 89999999999999999999999 99999864333238899999999999999755   68899999


Q ss_pred             HHHHHHhh
Q 003008          612 ASILEFIT  619 (858)
Q Consensus       612 ~~~L~~l~  619 (858)
                      +.+|.++.
T Consensus       774 l~aL~~ll  781 (810)
T 3now_A          774 TQCLAAAE  781 (810)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988874

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=379.85  Aligned_cols=506  Identities=18%  Similarity=0.143  Sum_probs=417.7

Q ss_pred             hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch
Q 003008          144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH  222 (858)
Q Consensus       144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~  222 (858)
                      ..|+++.|+.+|+++++.++..|+.+|.+|+.+.+++..+.. .|+++.|+++|++.. ++.++..|+.+|.+|+.++++
T Consensus        12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~-~~~~~~~A~~~L~~Ls~~~~~   90 (644)
T 2z6h_A           12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREG   90 (644)
T ss_dssp             CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSHHH
T ss_pred             hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcChhh
Confidence            689999999999999999999999999999998888888876 589999999998643 889999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008          223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIEL  301 (858)
Q Consensus       223 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl  301 (858)
                      +..+.+.|+++.|+++|+++++.++..|+++|.||+... ..+..+++.|+++.|+++|+++   .+..+..++.+|+++
T Consensus        91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~L  167 (644)
T 2z6h_A           91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQIL  167 (644)
T ss_dssp             HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC---CHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999874 5666788899999999999876   345777888999999


Q ss_pred             hc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccC-CchhhHHHHHHhccCCCCCCccchHHHH
Q 003008          302 AK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQ-GPSKFGANELLLGLNVSDKNANIDEAKM  379 (858)
Q Consensus       302 ~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~a~~aL~nL~~~~~~~~i~~~~~  379 (858)
                      +. +++++..+++.|+++. |++++                      +..+ ...+..++.+|+|++....++       
T Consensus       168 a~~~~~~~~~i~~~g~v~~-Lv~lL----------------------~~~~~~~~~~~a~~~L~nLs~~~~~~-------  217 (644)
T 2z6h_A          168 AYGNQESKLIILASGGPQA-LVNIM----------------------RTYTYEKLLWTTSRVLKVLSVCSSNK-------  217 (644)
T ss_dssp             HTTCHHHHHHHHHTTHHHH-HHHHH----------------------TTCCCHHHHHHHHHHHHHHTTCTTHH-------
T ss_pred             HhcCcHHHHHHHHcCChHH-HHHHH----------------------HcCChHHHHHHHHHHHHHHhcCcccH-------
Confidence            97 7899999999999994 99974                      1111 234556888999997544210       


Q ss_pred             hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHH
Q 003008          380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLF  459 (858)
Q Consensus       380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l  459 (858)
                                                          ..+...++++.|+.++.+++..++..++++|.+++......  .
T Consensus       218 ------------------------------------~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~  259 (644)
T 2z6h_A          218 ------------------------------------PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--E  259 (644)
T ss_dssp             ------------------------------------HHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--C
T ss_pred             ------------------------------------HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--h
Confidence                                                11222457899999999999999999999999987533221  1


Q ss_pred             HHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCc
Q 003008          460 KEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSK  538 (858)
Q Consensus       460 ~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~  538 (858)
                      ...++++.|+.+|+++++.++..++++|++|+. +++++..+.+.|+++.|+.++...++...+++.+..+|.+++....
T Consensus       260 ~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~  339 (644)
T 2z6h_A          260 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  339 (644)
T ss_dssp             SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc
Confidence            124789999999999999999999999999998 5788999999999999999998544347899999999999986321


Q ss_pred             c-cccccccccCcCcHHHHHhhcCCC-hhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHH
Q 003008          539 E-MKSKFYDIPVNGSEKGLDAAESLD-PSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASIL  615 (858)
Q Consensus       539 ~-~~~~~~i~~~~~i~~Li~ll~s~d-~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L  615 (858)
                      + ...+..+...++++.|+++|.+++ ++++..++ ++.|++.....+ ..+.+.|++|.|+++|.+.+..+|..|+|++
T Consensus       340 ~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al  418 (644)
T 2z6h_A          340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGG  418 (644)
T ss_dssp             THHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC-----
T ss_pred             hHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhcc
Confidence            1 122334667889999999999875 68999999 999999888888 8899999999999999888777777666644


Q ss_pred             HHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchH
Q 003008          616 EFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINST  695 (858)
Q Consensus       616 ~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~  695 (858)
                      .+-.        +                                                                   
T Consensus       419 ~n~~--------~-------------------------------------------------------------------  423 (644)
T 2z6h_A          419 TQQQ--------F-------------------------------------------------------------------  423 (644)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccch--------h-------------------------------------------------------------------
Confidence            3300        0                                                                   


Q ss_pred             HHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003008          696 HFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIIS  775 (858)
Q Consensus       696 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~  775 (858)
                                                                      ..+          ..+.++++.++.||.+|+.
T Consensus       424 ------------------------------------------------~~~----------~~~~~v~~~a~~aL~~La~  445 (644)
T 2z6h_A          424 ------------------------------------------------VEG----------VRMEEIVEGCTGALHILAR  445 (644)
T ss_dssp             ------------------------------------------------CCS----------SCHHHHHHHHHHHHHHHTT
T ss_pred             ------------------------------------------------ccc----------ccHHHHHHHHHHHHHHHhc
Confidence                                                            000          0124577889999999986


Q ss_pred             cCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHh
Q 003008          776 EGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLR  854 (858)
Q Consensus       776 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~  854 (858)
                      ..  ++...+.+.|++++|+++|.++++.++..|+.+|.||+.+++.+..+.+.|+++.|..++.++++.+ +.|.++|.
T Consensus       446 ~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~  523 (644)
T 2z6h_A          446 DV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF  523 (644)
T ss_dssp             SH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHH
Confidence            54  3666899999999999999999999999999999999999889999999999999999999999999 88888887


Q ss_pred             cCC
Q 003008          855 NLP  857 (858)
Q Consensus       855 ~l~  857 (858)
                      ++.
T Consensus       524 ~l~  526 (644)
T 2z6h_A          524 RMS  526 (644)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            763

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=7.9e-36  Score=347.38  Aligned_cols=466  Identities=18%  Similarity=0.170  Sum_probs=372.4

Q ss_pred             hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch
Q 003008          144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH  222 (858)
Q Consensus       144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~  222 (858)
                      ..|+++.|+.+|+++++.++..|+.+|.+|+.+++++..+.. .|+++.|+++|++.+ ++.+++.++.+|.+|+.++++
T Consensus        15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~-~~~~~~~a~~~L~~ls~~~~~   93 (529)
T 1jdh_A           15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHH
T ss_pred             hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCchh
Confidence            589999999999999999999999999999998888888876 589999999997542 889999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008          223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIEL  301 (858)
Q Consensus       223 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl  301 (858)
                      +..+.+.|+++.|+++++++++.++..++++|.|++.. +..+..+.+.|+++.|+++++++   ...++..++.+|.++
T Consensus        94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~---~~~~~~~~~~~L~~l  170 (529)
T 1jdh_A           94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQIL  170 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987 45677888999999999999875   455888899999999


Q ss_pred             hc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccC-CchhhHHHHHHhccCCCCCCccchHHHH
Q 003008          302 AK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQ-GPSKFGANELLLGLNVSDKNANIDEAKM  379 (858)
Q Consensus       302 ~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~a~~aL~nL~~~~~~~~i~~~~~  379 (858)
                      +. +++++..+++.|+++ .|++++                      +.++ ...+..+..+|+|++.++.++       
T Consensus       171 a~~~~~~~~~i~~~~~i~-~L~~ll----------------------~~~~~~~~~~~a~~~L~~l~~~~~~~-------  220 (529)
T 1jdh_A          171 AYGNQESKLIILASGGPQ-ALVNIM----------------------RTYTYEKLLWTTSRVLKVLSVCSSNK-------  220 (529)
T ss_dssp             HTTCHHHHHHHHHTTHHH-HHHHHH----------------------HHCCCHHHHHHHHHHHHHHTTSTTHH-------
T ss_pred             HhCCHHHHHHHHHCCCHH-HHHHHH----------------------HhCChHHHHHHHHHHHHHHhcCcccH-------
Confidence            98 689999999999999 499864                      2222 133444788899987554210       


Q ss_pred             hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHH
Q 003008          380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLF  459 (858)
Q Consensus       380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l  459 (858)
                                                          ..+...|+++.|+.++.+++++++..++++|.+++.......  
T Consensus       221 ------------------------------------~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--  262 (529)
T 1jdh_A          221 ------------------------------------PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--  262 (529)
T ss_dssp             ------------------------------------HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred             ------------------------------------HHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--
Confidence                                                112224588999999999999999999999999875433221  


Q ss_pred             HHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCc
Q 003008          460 KEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSK  538 (858)
Q Consensus       460 ~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~  538 (858)
                      ...|+++.|+.++++++++++..++++|++|+. +++++..+.+.|+++.|+.++..++++..+++.+..+|+|++....
T Consensus       263 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~  342 (529)
T 1jdh_A          263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  342 (529)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc
Confidence            124789999999999999999999999999998 5779999999999999999998545457899999999999986210


Q ss_pred             ccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCCC-HHHHHHHHHHHHH
Q 003008          539 EMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSY-PDLQRKAASILEF  617 (858)
Q Consensus       539 ~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~-~~v~~~a~~~L~~  617 (858)
                                                +             ....+ ..+.+.|++|.|+++|.+++ +.++..++++|.|
T Consensus       343 --------------------------~-------------~~~~~-~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~n  382 (529)
T 1jdh_A          343 --------------------------E-------------AEMAQ-NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN  382 (529)
T ss_dssp             --------------------------T-------------HHHHH-HHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             --------------------------h-------------HHHHH-HHHHHcCChhHHHHHhccccchHHHHHHHHHHHH
Confidence                                      0             01123 56788899999999999876 5899999999999


Q ss_pred             hhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHH
Q 003008          618 ITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHF  697 (858)
Q Consensus       618 l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~  697 (858)
                      ++.+++.+..                                                                      
T Consensus       383 l~~~~~~~~~----------------------------------------------------------------------  392 (529)
T 1jdh_A          383 LALCPANHAP----------------------------------------------------------------------  392 (529)
T ss_dssp             HTTSGGGHHH----------------------------------------------------------------------
T ss_pred             HhcChhhhHH----------------------------------------------------------------------
Confidence            8754333211                                                                      


Q ss_pred             HHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcC
Q 003008          698 IKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEG  777 (858)
Q Consensus       698 ~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~  777 (858)
                                                                  +.+.|++++|+++|.++++++|..|+|++.|.....
T Consensus       393 --------------------------------------------~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~  428 (529)
T 1jdh_A          393 --------------------------------------------LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE  428 (529)
T ss_dssp             --------------------------------------------HHHTTHHHHHHHHHHHHHHHHC-----------CBT
T ss_pred             --------------------------------------------HHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhc
Confidence                                                        114567899999999999999999999998832111


Q ss_pred             cchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008          778 VVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL  856 (858)
Q Consensus       778 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l  856 (858)
                                 |+          ..++++..++.+|++|+.++.++..+.+.|+++.|+.++.++++.+ ..|.++|.++
T Consensus       429 -----------~~----------~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l  487 (529)
T 1jdh_A          429 -----------GV----------RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL  487 (529)
T ss_dssp             -----------TB----------CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             -----------cc----------cHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHH
Confidence                       11          1245667899999999999989999999999999999999999988 7777777765

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.5e-35  Score=337.85  Aligned_cols=402  Identities=18%  Similarity=0.200  Sum_probs=312.9

Q ss_pred             ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-
Q 003008           98 TFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI-  176 (858)
Q Consensus        98 ~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-  176 (858)
                      .+..+.++.|+.+|. ++++.+|..|+++|.+++..+...+..++ +.|+||.|+++|+++++++++.|+++|+||+.. 
T Consensus        44 ~~~~~~i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~-~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~  121 (584)
T 3l6x_A           44 NWRQPELPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVR-KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR  121 (584)
T ss_dssp             CCCCCCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred             CcccccHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHH-HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence            356889999999998 88899999999999999987666655555 899999999999999999999999999999984 


Q ss_pred             -chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc---------------
Q 003008          177 -NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE---------------  240 (858)
Q Consensus       177 -~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~---------------  240 (858)
                       +++|..|++.|+||+|+++|++.. +..+++.++++|+|||.++++|..|++ +++++|++++.               
T Consensus       122 ~~~nk~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k  199 (584)
T 3l6x_A          122 DQDNKIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCK  199 (584)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC--------
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccc
Confidence             689999999999999999999742 788999999999999999999999996 57999999872               


Q ss_pred             ---cCCHHHHHHHHHHHHHHcCCc-CchHHHHhC-CCHHHHHHHHccC---CCCCHHHHHHHHHHHHHHhcChhhHHHHH
Q 003008          241 ---DENMKVKEAAGGVLANLALSK-SNHNILVEA-GVIPKLAMLLKAN---VEGSKVIRKEARNALIELAKDDYYRILII  312 (858)
Q Consensus       241 ---~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~-g~i~~Lv~ll~~~---~~~~~~~~~~a~~aL~nl~~~~~~~~~i~  312 (858)
                         ..+++++++|+++|.||+..+ ++|..+++. |+++.||.++++.   .......+++|+++|+|||..-+..  + 
T Consensus       200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e--~-  276 (584)
T 3l6x_A          200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE--I-  276 (584)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH--S-
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc--c-
Confidence               225799999999999999876 458888876 5578999999752   1123347899999999999762211  0 


Q ss_pred             HcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHH
Q 003008          313 EEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLV  392 (858)
Q Consensus       313 ~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~  392 (858)
                        -.... +.+..                      .. +     . ..   ......       .++             
T Consensus       277 --~~~~~-~~~~~----------------------~~-~-----~-~~---~~~~~~-------~Gv-------------  301 (584)
T 3l6x_A          277 --PQAER-YQEAA----------------------PN-V-----A-NN---TGTSPA-------RGY-------------  301 (584)
T ss_dssp             --TTCCC-----------------------------------------------CCC-------CGG-------------
T ss_pred             --cchhh-hhhhc----------------------cc-c-----c-cc---ccccCc-------hhH-------------
Confidence              00000 11100                      00 0     0 00   000000       011             


Q ss_pred             HhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhC-CCCHHHHHHHHHHHHHhcCC-----hhhHHHHHHcCcHH
Q 003008          393 RIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILG-LEDERAIARAAESIADISIN-----EHMRMLFKEAGAIK  466 (858)
Q Consensus       393 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~-----~~~~~~l~~~g~i~  466 (858)
                                             ..+...+.++.|+.+|. +.++.+++.|+++|+|++.+     ...+..+.+.++++
T Consensus       302 -----------------------e~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp  358 (584)
T 3l6x_A          302 -----------------------ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS  358 (584)
T ss_dssp             -----------------------GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred             -----------------------HHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence                                   22222347889999995 56899999999999997643     23455666789999


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCc------cHHHHHHHHHHHHHhcCCCccc
Q 003008          467 YLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI------SESLMEKTLDILGRILDPSKEM  540 (858)
Q Consensus       467 ~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~------~~~~~~~a~~~L~~l~~~~~~~  540 (858)
                      .|+.||.+++..+++.|+++|+||+.++.++..| ..|+++.|+.+|..++.      ..++...++++|.|+..     
T Consensus       359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a-----  432 (584)
T 3l6x_A          359 AIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA-----  432 (584)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc-----
Confidence            9999999999999999999999999988888777 67999999999986532      24556666666666654     


Q ss_pred             ccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCC--CHHHHHHHHHHHHHh
Q 003008          541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTS--YPDLQRKAASILEFI  618 (858)
Q Consensus       541 ~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~~l  618 (858)
                                                           .+...+ +.+.+.|+||.|+++++++  .+.+++.|+++|.++
T Consensus       433 -------------------------------------~~~~~~-~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl  474 (584)
T 3l6x_A          433 -------------------------------------ENLEAA-KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI  474 (584)
T ss_dssp             -------------------------------------TCHHHH-HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred             -------------------------------------CCHHHH-HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence                                                 233445 7889999999999999986  889999999999999


Q ss_pred             hcCCcchHHH
Q 003008          619 TIIDPSMDTI  628 (858)
Q Consensus       619 ~~~~~~~~~~  628 (858)
                      ..+.+.+..+
T Consensus       475 ~~~~elr~~~  484 (584)
T 3l6x_A          475 WGYKELRKPL  484 (584)
T ss_dssp             HTSHHHHHHH
T ss_pred             HcCHHHHHHH
Confidence            9988887776

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.5e-34  Score=330.69  Aligned_cols=405  Identities=18%  Similarity=0.169  Sum_probs=336.1

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcc-cHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcC-
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKK-CIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSI-  176 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~-~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~-  176 (858)
                      ....++.+++.+. |+|++.|..|+..++++.+.+.+ .++.++ +.|+||.|+++|+++ +++++..|+|+|.||+.. 
T Consensus        55 ~~~~i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii-~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~  132 (510)
T 3ul1_B           55 VNWSVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNII-RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT  132 (510)
T ss_dssp             SSCCHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHH-HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred             hhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHH-HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence            3456999999997 99999999999999987654433 245677 799999999999754 689999999999999775 


Q ss_pred             chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCC-----HHHHHHH
Q 003008          177 NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDEN-----MKVKEAA  250 (858)
Q Consensus       177 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~a  250 (858)
                      ++++..+++.|+||.|+.+|+++  ++.+++.|+++|+||+.+ +.+|..+.+.|++++|+.++..++     ..+...+
T Consensus       133 ~e~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a  210 (510)
T 3ul1_B          133 SEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL  210 (510)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH
Confidence            47999999999999999999998  999999999999999976 567899999999999999998753     4578899


Q ss_pred             HHHHHHHcCCcCchHH-HHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChh-hHHHHHHcCCcccccccccccc
Q 003008          251 GGVLANLALSKSNHNI-LVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY-YRILIIEEGLVPVPMVGADAYK  328 (858)
Q Consensus       251 ~~~L~nL~~~~~~~~~-i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~-~~~~i~~~g~v~~~Lv~ll~~~  328 (858)
                      +++|.|++.+...... ....|++|.|+.++++.   .+.++..++++|++|+.++. ....+++.|+            
T Consensus       211 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~------------  275 (510)
T 3ul1_B          211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIEMVVKKGV------------  275 (510)
T ss_dssp             HHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC------------
T ss_pred             HHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHhhchhhhHHHHHhccc------------
Confidence            9999999998655543 34468899999999875   44588899999999987543 3333334443            


Q ss_pred             cCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCC
Q 003008          329 SFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSE  408 (858)
Q Consensus       329 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~  408 (858)
                                                                                                      
T Consensus       276 --------------------------------------------------------------------------------  275 (510)
T 3ul1_B          276 --------------------------------------------------------------------------------  275 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHh-cCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHH
Q 003008          409 FPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADI-SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHAL  487 (858)
Q Consensus       409 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l-~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL  487 (858)
                                     ++.|+.+|.+++..++..++++|+++ +.+++.+..+++.|+++.|+.+|+++++.++..|+|+|
T Consensus       276 ---------------i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL  340 (510)
T 3ul1_B          276 ---------------VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM  340 (510)
T ss_dssp             ---------------HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred             ---------------chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence                           44455666677788999999999995 56788889999999999999999999999999999999


Q ss_pred             HHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhH
Q 003008          488 ERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSI  566 (858)
Q Consensus       488 ~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v  566 (858)
                      +||+. +++.+..+.+.|+++.|+.++..++  ..+++.|+++|+|++..+ +......+.+.|++++|+++|.++|+++
T Consensus       341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~v~~~Aa~aL~Nl~~~~-~~~~~~~L~~~g~i~~L~~LL~~~d~~i  417 (510)
T 3ul1_B          341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD--FKTQKEAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMNLLSAKDTKI  417 (510)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHC-CHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred             HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHccC-CHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence            99998 7888899999999999999999555  899999999999998632 2333456788999999999999999999


Q ss_pred             HHHHH-HHHHhhccc------cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008          567 ELTGN-VIEAAVSET------TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII  621 (858)
Q Consensus       567 ~~~a~-~l~~L~~~~------~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~  621 (858)
                      ...++ +|.++....      ......+.+.|+++.+-.|..+++.+|.+.|..+|......
T Consensus       418 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~  479 (510)
T 3ul1_B          418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV  479 (510)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            99999 999886421      11114567899999999999999999999999999877643

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.1e-34  Score=330.54  Aligned_cols=416  Identities=16%  Similarity=0.177  Sum_probs=310.4

Q ss_pred             hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--c
Q 003008          185 ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS--K  261 (858)
Q Consensus       185 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~  261 (858)
                      ..+.||.||++|+++  ++.++..|+++|.|||. ++++|..+++.|+||+|+++|+++++++++.|+++|.||+..  +
T Consensus        46 ~~~~i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~  123 (584)
T 3l6x_A           46 RQPELPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ  123 (584)
T ss_dssp             CCCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred             ccccHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence            357899999999998  99999999999999996 678999999999999999999999999999999999999984  7


Q ss_pred             CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCC
Q 003008          262 SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLP  341 (858)
Q Consensus       262 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~  341 (858)
                      ++|..+++.|+|+.||++|+++.  +..+++.++.+||||+.+++++..|++ |+++ +|++++.               
T Consensus       124 ~nk~~I~~~GaIp~LV~LL~s~~--~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp-~Lv~LL~---------------  184 (584)
T 3l6x_A          124 DNKIAIKNCDGVPALVRLLRKAR--DMDLTEVITGTLWNLSSHDSIKMEIVD-HALH-ALTDEVI---------------  184 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCC--SHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHH-HHHHHTH---------------
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCCchhhHHHHh-ccHH-HHHHHHh---------------
Confidence            89999999999999999998743  345899999999999999999999996 5689 5988630               


Q ss_pred             CcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccc
Q 003008          342 DGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWI  421 (858)
Q Consensus       342 ~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  421 (858)
                           ...               ......       .            .        .           .         
T Consensus       185 -----~p~---------------sg~~~~-------~------------~--------~-----------~---------  197 (584)
T 3l6x_A          185 -----IPH---------------SGWERE-------P------------N--------E-----------D---------  197 (584)
T ss_dssp             -----HHH---------------HCCC-----------------------------------------------------
T ss_pred             -----ccc---------------cccccc-------c------------c--------c-----------c---------
Confidence                 000               000000       0            0        0           0         


Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHc-CcHHHHHHhhcC------CcHHHHHHHHHHHHHhhcC
Q 003008          422 DGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEA-GAIKYLVKLLDH------SSDAVRLATTHALERLSVS  493 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~-g~i~~Lv~LL~~------~~~~v~~~a~~aL~~Ls~~  493 (858)
                            -.+..+++++++.+|+++|.|++. +++.|+.+++. |+++.|+.++++      .+...++.|+++|+||+..
T Consensus       198 ------~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~  271 (584)
T 3l6x_A          198 ------CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ  271 (584)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred             ------ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence                  001245678999999999999875 45669999985 556799999874      4578999999999999974


Q ss_pred             hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc-CCChhHHHHHH-
Q 003008          494 RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE-SLDPSIELTGN-  571 (858)
Q Consensus       494 ~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~-s~d~~v~~~a~-  571 (858)
                      .+...  -..+.   +.....  .++      .. . ......+.     ..++..++++.++.++. +.+++++.+|+ 
T Consensus       272 ~~~e~--~~~~~---~~~~~~--~~~------~~-~-~~~~~~Gv-----e~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~  331 (584)
T 3l6x_A          272 VHREI--PQAER---YQEAAP--NVA------NN-T-GTSPARGY-----ELLFQPEVVRIYISLLKESKTPAILEASAG  331 (584)
T ss_dssp             HHHHS--TTCCC---------------------------CCCCGG-----GGGGSHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             ccccc--cchhh---hhhhcc--ccc------cc-c-cccCchhH-----HHHhcccHHHHHHHHHccCCCHHHHHHHHH
Confidence            21100  00000   000000  000      00 0 01111111     12333445667777774 45677777777 


Q ss_pred             HHHHhhccc-----cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhc
Q 003008          572 VIEAAVSET-----TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKAL  646 (858)
Q Consensus       572 ~l~~L~~~~-----~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL  646 (858)
                      +|.||+...     ..+ ..+.+.+++|.|++||.+++..+++.|+++|.||+.+...+..|                  
T Consensus       332 AL~nL~ag~~~~~~~~~-~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I------------------  392 (584)
T 3l6x_A          332 AIQNLCAGRWTYGRYIR-SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI------------------  392 (584)
T ss_dssp             HHHHHHSSCSHHHHHHH-HHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH------------------
T ss_pred             HHHHHHcCCccccHHHH-HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH------------------
Confidence            777775432     223 46677899999999999999999999999999998765443322                  


Q ss_pred             cCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcc
Q 003008          647 EDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSC  726 (858)
Q Consensus       647 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~  726 (858)
                                                                                                      
T Consensus       393 --------------------------------------------------------------------------------  392 (584)
T 3l6x_A          393 --------------------------------------------------------------------------------  392 (584)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCccchhhhhhhcchHHHHHHhccC--------CHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHh
Q 003008          727 LSGPDQDFENPINMEVTLYEAIPRLIEQIKSF--------SSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLI  798 (858)
Q Consensus       727 ~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--------~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL  798 (858)
                                       ..|++|+||++|.++        +.+++..|+++|.||+..+.. +.+.+.+.|+|++|+++|
T Consensus       393 -----------------~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-~~~~I~~~g~I~~Lv~LL  454 (584)
T 3l6x_A          393 -----------------GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-AAKKLRETQGIEKLVLIN  454 (584)
T ss_dssp             -----------------HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHH
T ss_pred             -----------------HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHH
Confidence                             234567777777644        478899999999999987765 888999999999999999


Q ss_pred             hcC--ChHHHHHHHHHHHhhhcCccchHHHHHcCc
Q 003008          799 EEG--SNRAVEAGLAILYNLSMDSENHSAIIAAGA  831 (858)
Q Consensus       799 ~~~--~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~  831 (858)
                      +++  .+.+++.|+.+|+||..+.++|..+.+.|.
T Consensus       455 ~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~  489 (584)
T 3l6x_A          455 KSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW  489 (584)
T ss_dssp             TCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred             hCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence            986  889999999999999999999999998873

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3e-33  Score=324.66  Aligned_cols=403  Identities=18%  Similarity=0.164  Sum_probs=334.9

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCc-ccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc-
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGK-KCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN-  177 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~-~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~-  177 (858)
                      ...++.++..+. |+|++.+..|+..++++.+.+. ...+.++ +.|++|.|+++|..+ ++.++..|+|+|.||+..+ 
T Consensus        75 ~~~l~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii-~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~  152 (529)
T 3tpo_A           75 NWSVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNII-RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS  152 (529)
T ss_dssp             SCCHHHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHH-HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHH-HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence            346899999997 9999999999999988754433 2345666 799999999999754 6889999999999998865 


Q ss_pred             hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCC-----HHHHHHHH
Q 003008          178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDEN-----MKVKEAAG  251 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~a~  251 (858)
                      +++..+++.|+||.|+.+|.++  ++.+++.|+++|+||+.+ +++|..+.+.|++++|+.++..++     ..+...++
T Consensus       153 ~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~  230 (529)
T 3tpo_A          153 EQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  230 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence            6888999999999999999998  999999999999999975 578999999999999999998653     45788999


Q ss_pred             HHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCccccccccccccc
Q 003008          252 GVLANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD-YYRILIIEEGLVPVPMVGADAYKS  329 (858)
Q Consensus       252 ~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-~~~~~i~~~g~v~~~Lv~ll~~~~  329 (858)
                      ++|.|++.+..... .....|++|.|+.+++++   .+.++..++++|.+++.++ +....+++.|+             
T Consensus       231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~-------------  294 (529)
T 3tpo_A          231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIEMVVKKGV-------------  294 (529)
T ss_dssp             HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTC-------------
T ss_pred             HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC---cHHHHHHHHHHHHHhhhhhhhhHHHHHhccc-------------
Confidence            99999998865544 334468899999999875   4558889999999998754 33333444444             


Q ss_pred             CCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCC
Q 003008          330 FRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEF  409 (858)
Q Consensus       330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~  409 (858)
                                                                                                      
T Consensus       295 --------------------------------------------------------------------------------  294 (529)
T 3tpo_A          295 --------------------------------------------------------------------------------  294 (529)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHH
Q 003008          410 PIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALE  488 (858)
Q Consensus       410 ~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~  488 (858)
                                    ++.|+.+|.+++..++..++++|++++ .+++.+..+++.|+++.|+.+|+++++.++..|+|+|+
T Consensus       295 --------------i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~  360 (529)
T 3tpo_A          295 --------------VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS  360 (529)
T ss_dssp             --------------HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred             --------------hHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                          445555666777888999999999954 67888999999999999999999999999999999999


Q ss_pred             Hhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHH
Q 003008          489 RLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIE  567 (858)
Q Consensus       489 ~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~  567 (858)
                      ||+. ++..+..+.+.|+++.|+.++.+++  ..++..|+++|+|++..+ +......+.+.|++++|+++|.++|+++.
T Consensus       361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~nl~~~~-~~~~~~~l~~~g~i~~L~~LL~~~d~~i~  437 (529)
T 3tpo_A          361 NITAGRQDQIQQVVNHGLVPFLVGVLSKAD--FKTQKAAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMNLLSAKDTKII  437 (529)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHhcccHHHHHHHHhcCcHHHHHHHhcCCC--HHHHHHHHHHHHHHHcCC-CHHHHHHHHHCcCHHHHHHHhcCCCHHHH
Confidence            9998 7788889999999999999999555  889999999999998632 23334567889999999999999999999


Q ss_pred             HHHH-HHHHhhccc------cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008          568 LTGN-VIEAAVSET------TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI  620 (858)
Q Consensus       568 ~~a~-~l~~L~~~~------~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~  620 (858)
                      ..++ +|.++....      ......+.+.|++..+-.|..+++.+|.+.|..+|.....
T Consensus       438 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          438 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            9999 999886321      1111456789999999999999999999999999977654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=8.3e-34  Score=322.45  Aligned_cols=418  Identities=17%  Similarity=0.175  Sum_probs=305.0

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-chhHH
Q 003008          103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI-NVYRD  181 (858)
Q Consensus       103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~  181 (858)
                      .+|.|+.+|+ ++++++|..|+++|.+++.+++..+..++ +.|++|.|+++|++++++++..|+++|+||+.. +++|.
T Consensus         3 ~l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVY-QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHH-HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999998 88889999999999999987776544555 899999999999999999999999999999986 68999


Q ss_pred             HHHhcCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc--------cC--------CH
Q 003008          182 LVAECGAIEEITGLLT-RPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE--------DE--------NM  244 (858)
Q Consensus       182 ~i~~~g~i~~Lv~lL~-~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~--------~~--------~~  244 (858)
                      .|++.|+||.|+++|+ ++  ++.+++.++++|+|||.++++|..+++ |++++|+++|.        ++        ++
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~  157 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccH
Confidence            9999999999999999 76  999999999999999999989999999 99999999993        22        45


Q ss_pred             HHHHHHHHHHHHHcCCcCchHHHHhC-CCHHHHHHHHccCC---CCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccc
Q 003008          245 KVKEAAGGVLANLALSKSNHNILVEA-GVIPKLAMLLKANV---EGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVP  320 (858)
Q Consensus       245 ~~~~~a~~~L~nL~~~~~~~~~i~~~-g~i~~Lv~ll~~~~---~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~  320 (858)
                      ++...|+|+|+||+.+++++..+++. |+++.|+.+|+++.   .......+.++.+|+||+...+..    ...+.. .
T Consensus       158 ~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~----~~~~~~-~  232 (457)
T 1xm9_A          158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE----VPTRYR-Q  232 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH----SCCHHH-H
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhcc----Ccchhh-h
Confidence            67779999999999998888899997 99999999998620   001226789999999998643211    000000 0


Q ss_pred             cccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhccccc
Q 003008          321 MVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESE  400 (858)
Q Consensus       321 Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~  400 (858)
                      +...+                      +..  ........++.+.....     ...+..          +   .   . 
T Consensus       233 ~~~~~----------------------~~~--~~~~~~~~~~~~~~~~~-----~~~~~~----------~---~---~-  266 (457)
T 1xm9_A          233 LEYNA----------------------RNA--YTEKSSTGCFSNKSDKM-----MNNNYD----------C---P---L-  266 (457)
T ss_dssp             HHHTC-------------------------------------------------------------------------C-
T ss_pred             ccccc----------------------ccc--cccccccchhhccchhh-----hhcccc----------C---C---c-
Confidence            00000                      000  00000011111111000     000000          0   0   0 


Q ss_pred             CCCCCCCCCCcccccccccccccHHHHHHHhCC-CCHHHHHHHHHHHHHhcC-Chh----h-HHHHHHcCcHHHHHHhhc
Q 003008          401 DGRKPQSEFPIDRQLTLLPWIDGVARLVLILGL-EDERAIARAAESIADISI-NEH----M-RMLFKEAGAIKYLVKLLD  473 (858)
Q Consensus       401 ~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~~-~~~----~-~~~l~~~g~i~~Lv~LL~  473 (858)
                          ......+. ....+...++++.|+.+|.+ +++.+++.|+++|+|++. +.+    . +..+.+.|+++.|++||.
T Consensus       267 ----~~~~~~~~-~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~  341 (457)
T 1xm9_A          267 ----PEEETNPK-GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ  341 (457)
T ss_dssp             ----CCCCSSCC-GGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT
T ss_pred             ----cccccCch-HHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh
Confidence                00000111 11344445689999999964 568999999999999764 322    2 333447999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCc----cHHHHHHHHHHHHHhcCCCcccccccccccC
Q 003008          474 HSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI----SESLMEKTLDILGRILDPSKEMKSKFYDIPV  549 (858)
Q Consensus       474 ~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~  549 (858)
                      +++.+++..|+++|.||+.+++++..+.+ |++++|+++|..++.    ++++...++.+|.++..              
T Consensus       342 ~~~~~v~~~A~~aL~nls~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~--------------  406 (457)
T 1xm9_A          342 SGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA--------------  406 (457)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT--------------
T ss_pred             CCCHhHHHHHHHHHHHHhcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHh--------------
Confidence            99999999999999999998888777754 799999999986542    23455556666666554              


Q ss_pred             cCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcch
Q 003008          550 NGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTS-YPDLQRKAASILEFITIIDPSM  625 (858)
Q Consensus       550 ~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~~  625 (858)
                                                  .+.+.. ..+.+.|+++.|++++.++ +..+++.|.++|.++..+.+.+
T Consensus       407 ----------------------------~~~~~~-~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          407 ----------------------------SQPQLA-KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             ----------------------------TCTHHH-HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             ----------------------------cCHHHH-HHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence                                        112223 7788999999999999999 9999999999999998877654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=5.8e-33  Score=320.44  Aligned_cols=403  Identities=18%  Similarity=0.231  Sum_probs=328.1

Q ss_pred             cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc--hHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCC-cCc
Q 003008          188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK--HRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALS-KSN  263 (858)
Q Consensus       188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~-~~~  263 (858)
                      .|+.+|+.+++.  |++.+..|+..++.|.+.+.  ....+++.|+||.|+++|++. ++.++..|+|+|.||+.. ++.
T Consensus        58 ~i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~  135 (510)
T 3ul1_B           58 SVEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ  135 (510)
T ss_dssp             CHHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence            489999999998  99999999999999754433  367899999999999999755 689999999999999875 567


Q ss_pred             hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCC
Q 003008          264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPD  342 (858)
Q Consensus       264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~  342 (858)
                      +..+++.|+||.|+++|+++   .+.+++.|+++|+|++.+ +.+|..+++.|+++ +|+.++.                
T Consensus       136 ~~~vv~~GaIp~Lv~lL~s~---~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~-~Ll~lL~----------------  195 (510)
T 3ul1_B          136 TKAVVDGGAIPAFISLLASP---HAHISEQAVWALGNIAGDGSAFRDLVIKHGAID-PLLALLA----------------  195 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH-HHHHHTC----------------
T ss_pred             HHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChH-HHHHHHH----------------
Confidence            77899999999999999875   456999999999999985 78899999999999 5888641                


Q ss_pred             cchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccc
Q 003008          343 GTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWID  422 (858)
Q Consensus       343 ~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  422 (858)
                            ..+                 .                                                     
T Consensus       196 ------~~~-----------------~-----------------------------------------------------  199 (510)
T 3ul1_B          196 ------VPD-----------------L-----------------------------------------------------  199 (510)
T ss_dssp             ------SSC-----------------G-----------------------------------------------------
T ss_pred             ------hcc-----------------c-----------------------------------------------------
Confidence                  000                 0                                                     


Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEH-MRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIM  500 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l  500 (858)
                               ......++..++++|.+++.+.. ........|+++.|+.+|.+++++++..++++|.+|+. +.+....+
T Consensus       200 ---------~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i  270 (510)
T 3ul1_B          200 ---------STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV  270 (510)
T ss_dssp             ---------GGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             ---------hhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHH
Confidence                     00012234456677777554332 22233346789999999999999999999999999998 45566788


Q ss_pred             HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccc
Q 003008          501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSET  580 (858)
Q Consensus       501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~  580 (858)
                      .+.|+++.|+.++..++  ..++..+..+|+|++..                                          +.
T Consensus       271 ~~~g~i~~Lv~lL~~~~--~~v~~~al~aL~nl~~~------------------------------------------~~  306 (510)
T 3ul1_B          271 VKKGVVPQLVKLLGATE--LPIVTPALRAIGNIVTG------------------------------------------TD  306 (510)
T ss_dssp             HTTTCHHHHHHHHTCSC--HHHHHHHHHHHHHHTTS------------------------------------------CH
T ss_pred             HhcccchhhhhhhcCCC--hhhhhHHHHHHHHhhcC------------------------------------------CH
Confidence            89999999999998554  78899999999998761                                          11


Q ss_pred             cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCc
Q 003008          581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEK  660 (858)
Q Consensus       581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~  660 (858)
                      ... ..+.+.|+++.|+.+|++++..++..|+++|.|++.+.+.....                                
T Consensus       307 ~~~-~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~--------------------------------  353 (510)
T 3ul1_B          307 EQT-QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--------------------------------  353 (510)
T ss_dssp             HHH-HHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH--------------------------------
T ss_pred             HHH-HHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH--------------------------------
Confidence            222 67788999999999999999999999999999997644322111                                


Q ss_pred             cchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchh
Q 003008          661 YALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINM  740 (858)
Q Consensus       661 ~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  740 (858)
                                                                                                      
T Consensus       354 --------------------------------------------------------------------------------  353 (510)
T 3ul1_B          354 --------------------------------------------------------------------------------  353 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC-
Q 003008          741 EVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD-  819 (858)
Q Consensus       741 ~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~-  819 (858)
                       +.+.|++++|+.+|.+++.++|+.|++||.|++.....+++..+++.|++++|+++|++++++++..++.+|.||... 
T Consensus       354 -v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  432 (510)
T 3ul1_B          354 -VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  432 (510)
T ss_dssp             -HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence             124568999999999999999999999999999887776778999999999999999999999999999999998642 


Q ss_pred             ------ccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008          820 ------SENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRN  855 (858)
Q Consensus       820 ------~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~  855 (858)
                            +..+..+.+.|++..|..|..+++.++ ++|+..|.+
T Consensus       433 ~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~  475 (510)
T 3ul1_B          433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK  475 (510)
T ss_dssp             HTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence                  223345779999999999999999999 999998864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=7.2e-34  Score=317.45  Aligned_cols=363  Identities=19%  Similarity=0.235  Sum_probs=286.3

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC------------CHHHHHHHHH
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE------------SSAACEAAAG  168 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~------------~~~~~~~a~~  168 (858)
                      ...++.++..+. +.|++   ...+.|..++.+.+.+  ..+++.|++|.|+++|+..            +++.+..|+|
T Consensus        31 ~~~~~~l~~~~~-~~~~~---~~~~~ll~~~~~~~~~--~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~  104 (458)
T 3nmz_A           31 VEMVYSLLSMLG-THDKD---DMSRTLLAMSSSQDSC--ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA  104 (458)
T ss_dssp             ---------------CCH---HHHHHHHHHHSSTTHH--HHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCCHH---HHHHHHHHHHcCCcHH--HHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHH
Confidence            344677888887 66644   4778899999988864  3445899999999999863            3799999999


Q ss_pred             HHHHhhcCc-hhHHHHHhcCcH----------HHHHHHhcCCCCCHH-----HHH-------HHHHHHHHhccCcchHHH
Q 003008          169 LLRSISSIN-VYRDLVAECGAI----------EEITGLLTRPSLTSE-----VKE-------QSMCTLWNLSVDKKHRLK  225 (858)
Q Consensus       169 aL~nLs~~~-~~~~~i~~~g~i----------~~Lv~lL~~~~~~~~-----~~~-------~a~~~L~nLs~~~~~~~~  225 (858)
                      +|.||+... +......+.|++          +.+++++++...+.+     +++       .|+++|.|++.++++|..
T Consensus       105 al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~  184 (458)
T 3nmz_A          105 ALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA  184 (458)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHH
Confidence            999998754 566666777777          667777776520111     334       899999999999999999


Q ss_pred             HHhCCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHHcCCcC-chHHHHh-CCCHHHHHHHHccCCCCCHHHHH
Q 003008          226 IANTDILPLLIKSLED-----------ENMKVKEAAGGVLANLALSKS-NHNILVE-AGVIPKLAMLLKANVEGSKVIRK  292 (858)
Q Consensus       226 i~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~~L~nL~~~~~-~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~  292 (858)
                      +++.|++++|+.+|..           .++.+++.|+|+|.||+.+++ ++..+.. .|+||.|+++|+++   .+.+++
T Consensus       185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~---~~~v~~  261 (458)
T 3nmz_A          185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE---SEDLQQ  261 (458)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS---CHHHHH
T ss_pred             HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC---CHHHHH
Confidence            9999999999999952           246789999999999998875 5556654 45699999999875   455999


Q ss_pred             HHHHHHHHHhcC--hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCC
Q 003008          293 EARNALIELAKD--DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDK  370 (858)
Q Consensus       293 ~a~~aL~nl~~~--~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~  370 (858)
                      .|+++|+||+..  +++|..+++.|+++ +|++++                                             
T Consensus       262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~-~LV~lL---------------------------------------------  295 (458)
T 3nmz_A          262 VIASVLRNLSWRADVNSKKTLREVGSVK-ALMECA---------------------------------------------  295 (458)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHTTHHH-HHHHHH---------------------------------------------
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCHH-HHHHHH---------------------------------------------
Confidence            999999999983  67889999999888 577742                                             


Q ss_pred             CccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 003008          371 NANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS  450 (858)
Q Consensus       371 ~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~  450 (858)
                                                                                  +.++++.++..|+.+|+|++
T Consensus       296 ------------------------------------------------------------l~s~~~~v~~~A~~aL~nLs  315 (458)
T 3nmz_A          296 ------------------------------------------------------------LEVKKESTLKSVLSALWNLS  315 (458)
T ss_dssp             ------------------------------------------------------------TTCCSHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------------------------hcCCCHHHHHHHHHHHHHHc
Confidence                                                                        12234567788999999988


Q ss_pred             C-ChhhHHHHH-HcCcHHHHHHhhcCCcH----HHHHHHHHHHHHhhc----ChhHHHHHHHcCChHHHHHhhcCCCccH
Q 003008          451 I-NEHMRMLFK-EAGAIKYLVKLLDHSSD----AVRLATTHALERLSV----SRGVCQIMEAEGVVHPLVNTLKNLDISE  520 (858)
Q Consensus       451 ~-~~~~~~~l~-~~g~i~~Lv~LL~~~~~----~v~~~a~~aL~~Ls~----~~~~~~~l~~~g~i~~Li~lL~~~~~~~  520 (858)
                      . +++++..+. ..|+++.|+.+|.++++    .+++.|+++|+||+.    +++++..+.+.|+++.|+.+|+.++  .
T Consensus       316 ~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~--~  393 (458)
T 3nmz_A          316 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS--L  393 (458)
T ss_dssp             HHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC--H
T ss_pred             cCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC--h
Confidence            6 888888888 79999999999987764    599999999999994    8999999999999999999998555  7


Q ss_pred             HHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhh
Q 003008          521 SLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIM  600 (858)
Q Consensus       521 ~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL  600 (858)
                      .+++.|+++|+|++..                                          +.+.+ ..+.+.|++|+|+++|
T Consensus       394 ~v~~~A~~aL~nLa~~------------------------------------------~~~~~-~~i~~~G~I~~Lv~LL  430 (458)
T 3nmz_A          394 TIVSNACGTLWNLSAR------------------------------------------NPKDQ-EALWDMGAVSMLKNLI  430 (458)
T ss_dssp             HHHHHHHHHHHHHHSS------------------------------------------CHHHH-HHHHHHTHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHcC------------------------------------------CHHHH-HHHHHCCCHHHHHHHH
Confidence            8999999999999861                                          22334 7788999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCc
Q 003008          601 KTSYPDLQRKAASILEFITIIDP  623 (858)
Q Consensus       601 ~s~~~~v~~~a~~~L~~l~~~~~  623 (858)
                      ++++..+++.|+++|.||+.+++
T Consensus       431 ~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          431 HSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             hCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999998754

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.7e-32  Score=315.50  Aligned_cols=403  Identities=18%  Similarity=0.226  Sum_probs=328.7

Q ss_pred             cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc--chHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCCc-Cc
Q 003008          188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK--KHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALSK-SN  263 (858)
Q Consensus       188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~-~~  263 (858)
                      .++.+++.+.+.  +++.+..|+..+++|-+.+  .....+++.|++|.|+++|... ++.++..|+|+|.||+.+. +.
T Consensus        77 ~l~~lv~~l~s~--d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~  154 (529)
T 3tpo_A           77 SVEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ  154 (529)
T ss_dssp             CHHHHHHHHTSS--CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            589999999998  9999999999999874333  2467889999999999999755 6899999999999999875 45


Q ss_pred             hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCC
Q 003008          264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPD  342 (858)
Q Consensus       264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~  342 (858)
                      +..+++.|++|.|+.+|+++   .+.+++.|+++|+||+. ++.+|..+++.|+++ +|+.++.                
T Consensus       155 ~~~vv~~Gaip~Lv~LL~s~---~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~-~Ll~lL~----------------  214 (529)
T 3tpo_A          155 TKAVVDGGAIPAFISLLASP---HAHISEQAVWALGNIAGAGSAFRDLVIKHGAID-PLLALLA----------------  214 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH-HHHHTTC----------------
T ss_pred             HHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcH-HHHHHHh----------------
Confidence            56899999999999999876   45599999999999998 579999999999999 6888641                


Q ss_pred             cchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccc
Q 003008          343 GTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWID  422 (858)
Q Consensus       343 ~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  422 (858)
                            ..+                 .                                                     
T Consensus       215 ------~~~-----------------~-----------------------------------------------------  218 (529)
T 3tpo_A          215 ------VPD-----------------L-----------------------------------------------------  218 (529)
T ss_dssp             ------SSC-----------------G-----------------------------------------------------
T ss_pred             ------ccc-----------------h-----------------------------------------------------
Confidence                  000                 0                                                     


Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEH-MRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIM  500 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l  500 (858)
                               ......++..++++|.+++.+.. ........|+++.|+.+|.+++++++..++|+|.+++. +.+....+
T Consensus       219 ---------~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v  289 (529)
T 3tpo_A          219 ---------STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV  289 (529)
T ss_dssp             ---------GGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             ---------hHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence                     00012244566677777554332 22333446889999999999999999999999999998 55667788


Q ss_pred             HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccc
Q 003008          501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSET  580 (858)
Q Consensus       501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~  580 (858)
                      .+.|+++.|+.+|.+++  ..++..+..+|+|++..                                          +.
T Consensus       290 ~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~nl~~~------------------------------------------~~  325 (529)
T 3tpo_A          290 VKKGVVPQLVKLLGATE--LPIVTPALRAIGNIVTG------------------------------------------TD  325 (529)
T ss_dssp             HTTTCHHHHHHHHTCSC--HHHHHHHHHHHHHHTTS------------------------------------------CH
T ss_pred             HhccchHHHHHHhcCCC--hhHHHHHHHHHHHHHcc------------------------------------------ch
Confidence            89999999999998554  88889999999998761                                          11


Q ss_pred             cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCc
Q 003008          581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEK  660 (858)
Q Consensus       581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~  660 (858)
                      ... ..+.+.|+++.|+.+|+++++.++..|+++|.|++.+.+.....                                
T Consensus       326 ~~~-~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~--------------------------------  372 (529)
T 3tpo_A          326 EQT-QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--------------------------------  372 (529)
T ss_dssp             HHH-HHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH--------------------------------
T ss_pred             HHH-HHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH--------------------------------
Confidence            222 67788999999999999999999999999999997644322111                                


Q ss_pred             cchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchh
Q 003008          661 YALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINM  740 (858)
Q Consensus       661 ~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  740 (858)
                                                                                                      
T Consensus       373 --------------------------------------------------------------------------------  372 (529)
T 3tpo_A          373 --------------------------------------------------------------------------------  372 (529)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC-
Q 003008          741 EVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD-  819 (858)
Q Consensus       741 ~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~-  819 (858)
                       +.+.|++|+|+.+|.+++.++|..|++||+|++.....+++..+++.|+|++|+++|.+++++++..++.+|.||... 
T Consensus       373 -v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  451 (529)
T 3tpo_A          373 -VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  451 (529)
T ss_dssp             -HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence             124578999999999999999999999999999887776788999999999999999999999999999999998632 


Q ss_pred             ------ccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008          820 ------SENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRN  855 (858)
Q Consensus       820 ------~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~  855 (858)
                            +..+..+.+.|++..|..|..+++.++ ++|+..|.+
T Consensus       452 ~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~  494 (529)
T 3tpo_A          452 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK  494 (529)
T ss_dssp             HTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred             HhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence                  223445789999999999999999999 999988864

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=7.8e-32  Score=313.58  Aligned_cols=406  Identities=18%  Similarity=0.171  Sum_probs=339.7

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCc-ccHHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhhcC-c
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGK-KCIDYIMQFSGCINLTVNLLRSES-SAACEAAAGLLRSISSI-N  177 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~-~~~~~ii~~~g~i~~Li~lL~~~~-~~~~~~a~~aL~nLs~~-~  177 (858)
                      ...++.++.+|. ++|+.++..|+++|.+++.... ..++.++ +.|++|.|+.+|.+++ +.++..|+++|.+|+.. +
T Consensus        73 ~~~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~-~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~  150 (528)
T 4b8j_A           73 LESLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS  150 (528)
T ss_dssp             --CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHH-HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHH-HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence            456999999997 8899999999999999976554 3344555 7999999999999986 99999999999999986 5


Q ss_pred             hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHH-ccCCHHHHHHHHHHHH
Q 003008          178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSL-EDENMKVKEAAGGVLA  255 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~  255 (858)
                      +++..+.+.|+++.|+.+|+++  ++.+++.|+++|+||+.+ +.++..+.+.|++++|+.++ .+.++.++..++++|.
T Consensus       151 ~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~  228 (528)
T 4b8j_A          151 ENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS  228 (528)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            7999999999999999999997  999999999999999966 55788999999999999999 5668999999999999


Q ss_pred             HHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhh-HHHHHHcCCcccccccccccccCCccC
Q 003008          256 NLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYY-RILIIEEGLVPVPMVGADAYKSFRPEL  334 (858)
Q Consensus       256 nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~-~~~i~~~g~v~~~Lv~ll~~~~~~~~l  334 (858)
                      +|+............|+++.|+.+++++   .+.++..++++|.+++..+.. ...+++.|+                  
T Consensus       229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~------------------  287 (528)
T 4b8j_A          229 NFCRGKPQPSFEQTRPALPALARLIHSN---DEEVLTDACWALSYLSDGTNDKIQAVIEAGV------------------  287 (528)
T ss_dssp             HHHCSSSCCCHHHHTTHHHHHHHHTTCC---CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTC------------------
T ss_pred             HHHcCCCCCcHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCH------------------
Confidence            9998865445555689999999999765   455888999999999875432 233444444                  


Q ss_pred             CCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccc
Q 003008          335 HSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQ  414 (858)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~  414 (858)
                                                                                                      
T Consensus       288 --------------------------------------------------------------------------------  287 (528)
T 4b8j_A          288 --------------------------------------------------------------------------------  287 (528)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCC-cHHHHHHHHHHHHHhhc
Q 003008          415 LTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHS-SDAVRLATTHALERLSV  492 (858)
Q Consensus       415 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~-~~~v~~~a~~aL~~Ls~  492 (858)
                               ++.|+.+|.++++.++..|+++|++++ .++..+..+++.|+++.|+.+|.++ ++.++..|+++|+||+.
T Consensus       288 ---------v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          288 ---------CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             ---------HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence                     444555566667788999999999966 5777888899999999999999998 89999999999999997


Q ss_pred             -ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008          493 -SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN  571 (858)
Q Consensus       493 -~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~  571 (858)
                       +++....+.+.|+++.|+.+|..+  +..++..++++|.+++..+ +......+.+.++++.|+.++.++|++++..++
T Consensus       359 ~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al  435 (528)
T 4b8j_A          359 GNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGG-SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL  435 (528)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence             677788899999999999999855  4899999999999998732 233444566789999999999999999999999


Q ss_pred             -HHHHhhccccc-----------hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008          572 -VIEAAVSETTT-----------SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP  623 (858)
Q Consensus       572 -~l~~L~~~~~~-----------~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~  623 (858)
                       +|.+++.....           .+..+.+.|+++.+..+..+.+++++..|..+|.++....+
T Consensus       436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~  499 (528)
T 4b8j_A          436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE  499 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence             99999754322           22667789999999999999999999999999998876443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=8.2e-33  Score=314.28  Aligned_cols=413  Identities=15%  Similarity=0.137  Sum_probs=305.0

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHH
Q 003008          147 CINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRL  224 (858)
Q Consensus       147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~  224 (858)
                      .+|.|+.+|++++++++..|+++|++|+.++ +++..+.+.|+||.|+++|+++  ++.+++.|+++|.||+.+ +++|.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999999999999999999999765 4688999999999999999987  999999999999999976 88999


Q ss_pred             HHHhCCCHHHHHHHHc-cCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008          225 KIANTDILPLLIKSLE-DENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK  303 (858)
Q Consensus       225 ~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~  303 (858)
                      .+++.|++++|+++|+ ++++++++.++|+|+||+.++++|..+++ |++|.|+++|....                 + 
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~-----------------s-  141 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPF-----------------S-  141 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHH-----------------H-
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccc-----------------c-
Confidence            9999999999999999 88999999999999999999999999999 99999999984310                 0 


Q ss_pred             ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhh
Q 003008          304 DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMV  383 (858)
Q Consensus       304 ~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li  383 (858)
                                 |.-..+-.+                                             .              
T Consensus       142 -----------~~~~~~~~~---------------------------------------------~--------------  151 (457)
T 1xm9_A          142 -----------GWCDGNSNM---------------------------------------------S--------------  151 (457)
T ss_dssp             -----------TCC------------------------------------------------------------------
T ss_pred             -----------ccccCccch---------------------------------------------h--------------
Confidence                       000000000                                             0              


Q ss_pred             hhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHc-
Q 003008          384 GRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEA-  462 (858)
Q Consensus       384 ~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~-  462 (858)
                                                                     -...+.+++..|+++|+|++.+++++..+.+. 
T Consensus       152 -----------------------------------------------~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~  184 (457)
T 1xm9_A          152 -----------------------------------------------REVVDPEVFFNATGCLRNLSSADAGRQTMRNYS  184 (457)
T ss_dssp             -------------------------------------------------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTST
T ss_pred             -----------------------------------------------cccccHHHHHHHHHHHHHHccCHHHHHHHHHcC
Confidence                                                           00134567889999999988778999999997 


Q ss_pred             CcHHHHHHhhcC------CcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCC-----------CccHHHHHH
Q 003008          463 GAIKYLVKLLDH------SSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNL-----------DISESLMEK  525 (858)
Q Consensus       463 g~i~~Lv~LL~~------~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~-----------~~~~~~~~~  525 (858)
                      |+++.|+.+|++      .+..+++.++++|+||+...+...    ..+...+...++..           ......+..
T Consensus       185 g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (457)
T 1xm9_A          185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV----PTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN  260 (457)
T ss_dssp             THHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS----CCHHHHHHHTC-----------------------
T ss_pred             CCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccC----cchhhhcccccccccccccccchhhccchhhhhc
Confidence            999999999985      345688899999999985321100    00000000000000           000000000


Q ss_pred             HHHHHH----HhcCCCcccccccccccCcCcHHHHHhhcC-CChhHHHHHH-HHHHhhccccc------hhhhHhhccch
Q 003008          526 TLDILG----RILDPSKEMKSKFYDIPVNGSEKGLDAAES-LDPSIELTGN-VIEAAVSETTT------SYGKVLDSVFI  593 (858)
Q Consensus       526 a~~~L~----~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s-~d~~v~~~a~-~l~~L~~~~~~------~~~~i~~~g~i  593 (858)
                      . .-+.    .-...+     ...++..++++.++.+|.+ .+++++..++ +|.|++.....      + ..+.+.|++
T Consensus       261 ~-~~~~~~~~~~~~~~-----~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~-~~v~~~~~l  333 (457)
T 1xm9_A          261 N-YDCPLPEEETNPKG-----SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ-LIGLKEKGL  333 (457)
T ss_dssp             ------CCCCCSSCCG-----GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHH-HHHTTSCCH
T ss_pred             c-ccCCccccccCchH-----HHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHH-HHHHHcCCc
Confidence            0 0000    000000     0123345667777777764 4577777777 88887653321      2 345678999


Q ss_pred             hHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHH
Q 003008          594 GRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAIS  673 (858)
Q Consensus       594 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~  673 (858)
                      |.|+++|.+++..+++.|+++|.|++.+.+....+                                             
T Consensus       334 ~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i---------------------------------------------  368 (457)
T 1xm9_A          334 PQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM---------------------------------------------  368 (457)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH---------------------------------------------
T ss_pred             hHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH---------------------------------------------
Confidence            99999999999999999999999997644322211                                             


Q ss_pred             HhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHH
Q 003008          674 AGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIE  753 (858)
Q Consensus       674 ~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~  753 (858)
                                                                                            ..+++++|++
T Consensus       369 ----------------------------------------------------------------------~~~~i~~Lv~  378 (457)
T 1xm9_A          369 ----------------------------------------------------------------------GNQVFPEVTR  378 (457)
T ss_dssp             ----------------------------------------------------------------------HHHTHHHHHH
T ss_pred             ----------------------------------------------------------------------HHhhhHHHHH
Confidence                                                                                  2246788888


Q ss_pred             HhccCC------HHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcC-ChHHHHHHHHHHHhhhcCccchH
Q 003008          754 QIKSFS------SEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEG-SNRAVEAGLAILYNLSMDSENHS  824 (858)
Q Consensus       754 lL~~~~------~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nL~~~~~~~~  824 (858)
                      +|.+++      .++...++++|.|+...... ++..+.+.||+++|++++.++ ++++++.|..+|.|+..+.++|.
T Consensus       379 lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~  455 (457)
T 1xm9_A          379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG  455 (457)
T ss_dssp             TTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred             hccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence            887543      47888999999999876654 788999999999999999999 99999999999999999988764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=9.3e-33  Score=308.50  Aligned_cols=332  Identities=17%  Similarity=0.154  Sum_probs=274.2

Q ss_pred             ccCCCcHHHHHHHhcCCC-----------CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcH----------HHHHHHHc
Q 003008           98 TFGDSYVALFVQMLGLDY-----------DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCI----------NLTVNLLR  156 (858)
Q Consensus        98 ~~~~g~i~~lv~lL~~s~-----------d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i----------~~Li~lL~  156 (858)
                      ..+.|++|.|+.+|+.+.           +++.+.+|+++|.|++.++...++ ..++.|++          +.+++++.
T Consensus        66 ~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~  144 (458)
T 3nmz_A           66 MRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKR-GRREIRVLHLLEQIRAYCETCWEWQE  144 (458)
T ss_dssp             HHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhH-HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            467999999999998432           379999999999999998887754 44478888          66777776


Q ss_pred             cCC--HH-----HHH-------HHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcC---------CCCCHHHHHHHHHHH
Q 003008          157 SES--SA-----ACE-------AAAGLLRSISSINVYRDLVAECGAIEEITGLLTR---------PSLTSEVKEQSMCTL  213 (858)
Q Consensus       157 ~~~--~~-----~~~-------~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~~~a~~~L  213 (858)
                      +..  ++     +++       +|+|+|.||+.++++|+.|.+.|++++|+.+|..         ...++.+++.|+++|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL  224 (458)
T 3nmz_A          145 AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL  224 (458)
T ss_dssp             TTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             hhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence            542  12     444       8999999999998999999999999999999952         101467899999999


Q ss_pred             HHhccCcc-hHHHHHh-CCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--cCchHHHHhCCCHHHHHHHHccCCCCCHH
Q 003008          214 WNLSVDKK-HRLKIAN-TDILPLLIKSLEDENMKVKEAAGGVLANLALS--KSNHNILVEAGVIPKLAMLLKANVEGSKV  289 (858)
Q Consensus       214 ~nLs~~~~-~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  289 (858)
                      .|||.+++ ++..+.. .|+||+|+++|+++++++++.++++|.||+..  +.+|..+++.|+++.||++|.+..  .+.
T Consensus       225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~--~~~  302 (458)
T 3nmz_A          225 TNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KES  302 (458)
T ss_dssp             HHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC--SHH
T ss_pred             HHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC--CHH
Confidence            99998765 6777764 56699999999999999999999999999985  468889999999999999764322  455


Q ss_pred             HHHHHHHHHHHHhc-ChhhHHHHH-HcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCC
Q 003008          290 IRKEARNALIELAK-DDYYRILII-EEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNV  367 (858)
Q Consensus       290 ~~~~a~~aL~nl~~-~~~~~~~i~-~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~  367 (858)
                      +++.++.+||||+. +++++..++ ..|+++ +|++++.                      ..+                
T Consensus       303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~-~Lv~LL~----------------------~~~----------------  343 (458)
T 3nmz_A          303 TLKSVLSALWNLSAHCTENKADICAVDGALA-FLVGTLT----------------------YRS----------------  343 (458)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH-HHHHHTT----------------------CCC----------------
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHhcCcHH-HHHHHhc----------------------CCC----------------
Confidence            88999999999999 788888888 688888 4887531                      000                


Q ss_pred             CCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHH
Q 003008          368 SDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIA  447 (858)
Q Consensus       368 ~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~  447 (858)
                       +                                                               .+..+++..|+++|.
T Consensus       344 -~---------------------------------------------------------------~~~~~v~~~A~~aL~  359 (458)
T 3nmz_A          344 -Q---------------------------------------------------------------TNTLAIIESGGGILR  359 (458)
T ss_dssp             -S---------------------------------------------------------------SSTTHHHHHHHHHHH
T ss_pred             -C---------------------------------------------------------------cchHHHHHHHHHHHH
Confidence             0                                                               001146778899999


Q ss_pred             Hhc----CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHH
Q 003008          448 DIS----INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESL  522 (858)
Q Consensus       448 ~l~----~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~  522 (858)
                      |++    .++++++.+++.|+++.|+.+|++++..+++.|+++|+||+. +++++..+.+.|++++|+.++..++  ..+
T Consensus       360 nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~--~~v  437 (458)
T 3nmz_A          360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH--KMI  437 (458)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS--HHH
T ss_pred             HHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC--HHH
Confidence            976    589999999999999999999999999999999999999995 8999999999999999999998554  889


Q ss_pred             HHHHHHHHHHhcCCC
Q 003008          523 MEKTLDILGRILDPS  537 (858)
Q Consensus       523 ~~~a~~~L~~l~~~~  537 (858)
                      ++.|+++|.||+..+
T Consensus       438 ~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          438 AMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999999843

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=5.2e-31  Score=306.65  Aligned_cols=409  Identities=17%  Similarity=0.139  Sum_probs=340.6

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCC-cccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGG-KKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN  177 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~-~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~  177 (858)
                      -.+.++.|+..|+ ++++.+|..|+..|.++.... ....+.++ +.|++|.|+.+|.++ ++.++..|+++|.+++...
T Consensus        85 ~~~~i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~-~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~  162 (530)
T 1wa5_B           85 LQQELPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVI-QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT  162 (530)
T ss_dssp             --CCHHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHH-HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHH-HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence            4577999999998 889999999999999997643 22234555 799999999999997 8999999999999999865


Q ss_pred             -hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHH
Q 003008          178 -VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLA  255 (858)
Q Consensus       178 -~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~  255 (858)
                       +++..+.+.|+++.|+.+|+++  ++.+++.|+++|+||+.+ +.++..+...|+++.|+.++.+.++.++..++++|.
T Consensus       163 ~~~~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  240 (530)
T 1wa5_B          163 SAQTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS  240 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHH
Confidence             6888899999999999999987  999999999999999976 567888889999999999999999999999999999


Q ss_pred             HHcCCc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCcc
Q 003008          256 NLALSK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPE  333 (858)
Q Consensus       256 nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~  333 (858)
                      +|+... .........|+++.|+.++.++   .+.++..++++|.+|+.. +..+..+++.|+++               
T Consensus       241 ~L~~~~~~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~---------------  302 (530)
T 1wa5_B          241 NLCRGKKPQPDWSVVSQALPTLAKLIYSM---DTETLVDACWAISYLSDGPQEAIQAVIDVRIPK---------------  302 (530)
T ss_dssp             HHHCCSSSCCCHHHHGGGHHHHHHHTTCC---CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH---------------
T ss_pred             HHhCCCCCCCcHHHHHhHHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH---------------
Confidence            999875 4444556679999999999765   355889999999999974 44444444444444               


Q ss_pred             CCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccc
Q 003008          334 LHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDR  413 (858)
Q Consensus       334 l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~  413 (858)
                                                                                                      
T Consensus       303 --------------------------------------------------------------------------------  302 (530)
T 1wa5_B          303 --------------------------------------------------------------------------------  302 (530)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008          414 QLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV  492 (858)
Q Consensus       414 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~  492 (858)
                                  .|+.+|.++++.++..|+++|++++ .+++....+++.|+++.|+.+|.+++..++..|+++|++++.
T Consensus       303 ------------~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          303 ------------RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA  370 (530)
T ss_dssp             ------------HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             ------------HHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence                        4445555566778889999999966 567777888899999999999999999999999999999997


Q ss_pred             -ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcc-cccccccccCcCcHHHHHhhcCCChhHHHHH
Q 003008          493 -SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE-MKSKFYDIPVNGSEKGLDAAESLDPSIELTG  570 (858)
Q Consensus       493 -~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a  570 (858)
                       +++....+.+.|+++.|+.+|..++  ..++..++++|++++..+.. ......+.+.++++.|+.++.+++++++..+
T Consensus       371 ~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  448 (530)
T 1wa5_B          371 GNTEQIQAVIDANLIPPLVKLLEVAE--YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT  448 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence             6777888889999999999998554  89999999999999863211 0233456678999999999999999999999


Q ss_pred             H-HHHHhhccccc-----------hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008          571 N-VIEAAVSETTT-----------SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS  624 (858)
Q Consensus       571 ~-~l~~L~~~~~~-----------~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~  624 (858)
                      + +|.+++.....           .+..+.+.|+++.|..++.++++.+++.|..+|.++....+.
T Consensus       449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~  514 (530)
T 1wa5_B          449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  514 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence            9 99998754321           225577899999999999999999999999999998765443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.8e-30  Score=300.46  Aligned_cols=401  Identities=18%  Similarity=0.229  Sum_probs=331.5

Q ss_pred             CcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-c-chHHHHHhCCCHHHHHHHHccCC-HHHHHHHHHHHHHHcCC-cC
Q 003008          187 GAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-K-KHRLKIANTDILPLLIKSLEDEN-MKVKEAAGGVLANLALS-KS  262 (858)
Q Consensus       187 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~-~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~a~~~L~nL~~~-~~  262 (858)
                      -.+|.|++.|.++  ++.++..|+++|.++... + .....+++.|+++.|+++|.+++ +.++..|+++|.+++.. ++
T Consensus        74 ~~l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           74 ESLPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             -CHHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            3589999999988  999999999999999543 3 56888899999999999999986 99999999999999986 67


Q ss_pred             chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCC
Q 003008          263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLP  341 (858)
Q Consensus       263 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~  341 (858)
                      .+..+++.|+++.|+.+|+++   .+.+++.|+++|+|++.+ +.++..+.+.|+++ +|+.++.               
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~-~Ll~lL~---------------  212 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSS---SDDVREQAVWALGNVAGDSPKCRDLVLANGALL-PLLAQLN---------------  212 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHH-HHHHTCC---------------
T ss_pred             HHHHHHhCCcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHH-HHHHHHh---------------
Confidence            778889999999999999875   456999999999999985 67788888888888 4766420               


Q ss_pred             CcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccc
Q 003008          342 DGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWI  421 (858)
Q Consensus       342 ~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  421 (858)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (528)
T 4b8j_A          213 --------------------------------------------------------------------------------  212 (528)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-hhHHHHH
Q 003008          422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS-RGVCQIM  500 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~l  500 (858)
                                .++++.++..++++|++++............|+++.|+.+|.++++.++..++++|++|+.. +.....+
T Consensus       213 ----------~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  282 (528)
T 4b8j_A          213 ----------EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAV  282 (528)
T ss_dssp             ----------TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             ----------cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                      12345567777788888665433333445589999999999999999999999999999984 4555788


Q ss_pred             HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccc
Q 003008          501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSET  580 (858)
Q Consensus       501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~  580 (858)
                      .+.|+++.|+.+|.+++  ..++..++++|++++...                                          .
T Consensus       283 ~~~g~v~~Lv~lL~~~~--~~v~~~a~~~L~nl~~~~------------------------------------------~  318 (528)
T 4b8j_A          283 IEAGVCPRLVELLLHPS--PSVLIPALRTVGNIVTGD------------------------------------------D  318 (528)
T ss_dssp             HHTTCHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSC------------------------------------------H
T ss_pred             HHcCHHHHHHHHHcCCC--hhHHHHHHHHHHHHHcCC------------------------------------------H
Confidence            89999999999998554  789999999999998711                                          1


Q ss_pred             cchhhhHhhccchhHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCC
Q 003008          581 TTSYGKVLDSVFIGRMIGIMKTS-YPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPE  659 (858)
Q Consensus       581 ~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~  659 (858)
                      ... ..+.+.|++|.|+.+|.++ ++.++..|+++|.+++.+.+.....                               
T Consensus       319 ~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~-------------------------------  366 (528)
T 4b8j_A          319 AQT-QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQA-------------------------------  366 (528)
T ss_dssp             HHH-HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHH-------------------------------
T ss_pred             HHH-HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHH-------------------------------
Confidence            122 5677889999999999998 9999999999999987532111000                               


Q ss_pred             ccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccch
Q 003008          660 KYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPIN  739 (858)
Q Consensus       660 ~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  739 (858)
                                                                                                      
T Consensus       367 --------------------------------------------------------------------------------  366 (528)
T 4b8j_A          367 --------------------------------------------------------------------------------  366 (528)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC
Q 003008          740 MEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD  819 (858)
Q Consensus       740 ~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~  819 (858)
                        +...|+++.|+.+|.++++.+|..|+++|.|++....++....+++.|++++|+++|.+++++++..|+.+|.||...
T Consensus       367 --~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (528)
T 4b8j_A          367 --VINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV  444 (528)
T ss_dssp             --HHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             --HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence              114468999999999999999999999999999875555777999999999999999999999999999999999764


Q ss_pred             cc------------chHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008          820 SE------------NHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL  856 (858)
Q Consensus       820 ~~------------~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l  856 (858)
                      .+            ....+.+.|++..|..+..++++.+ ++|..++.++
T Consensus       445 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~  494 (528)
T 4b8j_A          445 GETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY  494 (528)
T ss_dssp             HHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            32            3566889999999999999999998 8888887754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.98  E-value=2.3e-29  Score=292.79  Aligned_cols=401  Identities=18%  Similarity=0.226  Sum_probs=330.5

Q ss_pred             cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCC-c
Q 003008          186 CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALS-K  261 (858)
Q Consensus       186 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~-~  261 (858)
                      .+.++.|++.|+++  ++.++..|+.+|.++...  +.+...+++.|+++.|+++|.++ ++.++..|+++|.+++.. +
T Consensus        86 ~~~i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~  163 (530)
T 1wa5_B           86 QQELPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS  163 (530)
T ss_dssp             -CCHHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence            36799999999998  999999999999999654  34567788999999999999997 899999999999999986 4


Q ss_pred             CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCC
Q 003008          262 SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSL  340 (858)
Q Consensus       262 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~  340 (858)
                      +.+..+++.|+++.|+.+|+++   .+.+++.|+++|++++.+ +.++..+...|+++ +|+.+                
T Consensus       164 ~~~~~~~~~g~i~~Lv~lL~~~---~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~-~L~~l----------------  223 (530)
T 1wa5_B          164 AQTKVVVDADAVPLFIQLLYTG---SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME-PILGL----------------  223 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH-HHHHG----------------
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHH-HHHHH----------------
Confidence            5667888999999999999875   456999999999999985 67777777777777 36554                


Q ss_pred             CCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccc
Q 003008          341 PDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPW  420 (858)
Q Consensus       341 ~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~  420 (858)
                                                                                                      
T Consensus       224 --------------------------------------------------------------------------------  223 (530)
T 1wa5_B          224 --------------------------------------------------------------------------------  223 (530)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHH
Q 003008          421 IDGVARLVLILGLEDERAIARAAESIADISINE-HMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQ  498 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~  498 (858)
                                |.+++..++..|+++|++++... .........++++.|+.+|.++++.++..++++|++|+. .++...
T Consensus       224 ----------l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~  293 (530)
T 1wa5_B          224 ----------FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ  293 (530)
T ss_dssp             ----------GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             ----------hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence                      22334567777888888866443 334455568999999999999999999999999999998 567788


Q ss_pred             HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhc
Q 003008          499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVS  578 (858)
Q Consensus       499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~  578 (858)
                      .+.+.|+++.|+.++.+++  ..++..++++|++++...                                         
T Consensus       294 ~~~~~~~v~~Lv~lL~~~~--~~v~~~a~~~L~~l~~~~-----------------------------------------  330 (530)
T 1wa5_B          294 AVIDVRIPKRLVELLSHES--TLVQTPALRAVGNIVTGN-----------------------------------------  330 (530)
T ss_dssp             HHHHTTCHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSC-----------------------------------------
T ss_pred             HHHhcCcHHHHHHHHCCCC--hhhHHHHHHHHHHHHcCC-----------------------------------------
Confidence            8889999999999998544  889999999999998611                                         


Q ss_pred             cccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCC
Q 003008          579 ETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQP  658 (858)
Q Consensus       579 ~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~  658 (858)
                       .... ..+.+.|++|.|+.+|.++++.++..|+++|.+++...+.....                              
T Consensus       331 -~~~~-~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~------------------------------  378 (530)
T 1wa5_B          331 -DLQT-QVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA------------------------------  378 (530)
T ss_dssp             -HHHH-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH------------------------------
T ss_pred             -HHHH-HHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH------------------------------
Confidence             1112 55677899999999999999999999999999987532110000                              


Q ss_pred             CccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccc
Q 003008          659 EKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPI  738 (858)
Q Consensus       659 ~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  738 (858)
                                                                                                      
T Consensus       379 --------------------------------------------------------------------------------  378 (530)
T 1wa5_B          379 --------------------------------------------------------------------------------  378 (530)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcc--hhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008          739 NMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVV--DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL  816 (858)
Q Consensus       739 ~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL  816 (858)
                         +.+.|+++.|+.+|.++++.+|..|+++|.|++.....  +....+.+.|++++|+.+|.+++++++..|+.+|.+|
T Consensus       379 ---~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l  455 (530)
T 1wa5_B          379 ---VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI  455 (530)
T ss_dssp             ---HHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             ---HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence               11456899999999999999999999999999987544  4777899999999999999999999999999999999


Q ss_pred             hcCcc------------chHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008          817 SMDSE------------NHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL  856 (858)
Q Consensus       817 ~~~~~------------~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l  856 (858)
                      ....+            ....+.+.|+++.|..++.++++.+ ++|..+|.++
T Consensus       456 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~  508 (530)
T 1wa5_B          456 LKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY  508 (530)
T ss_dssp             HHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            86532            2356889999999999999999999 8999988764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.97  E-value=1.8e-29  Score=287.32  Aligned_cols=402  Identities=17%  Similarity=0.194  Sum_probs=330.6

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHccc--CCcccHHHHHHhc-CcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc-
Q 003008          103 YVALFVQMLGLDYDPLDREQAVEALWKYSL--GGKKCIDYIMQFS-GCINLTVNLLRSE-SSAACEAAAGLLRSISSIN-  177 (858)
Q Consensus       103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~--~~~~~~~~ii~~~-g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~-  177 (858)
                      .++.|+..|+ ++|+.+|..|+..|.++..  .+.. .+.++ +. |+++.|+++|+++ ++.++..|+++|.+++... 
T Consensus        21 ~l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~-~~~~~-~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~   97 (450)
T 2jdq_A           21 ITSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPP-IDEVI-STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS   97 (450)
T ss_dssp             -CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCC-HHHHH-TSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred             cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCc-HHHHH-HcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence            4788999997 8899999999999999754  2222 34566 56 9999999999998 8999999999999998854 


Q ss_pred             hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-chHHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHH
Q 003008          178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLA  255 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~  255 (858)
                      +++..+.+.|++|.|+++|+++  ++.+++.|+++|.|++.+. .++..+.+.|+++.|+.++.+ .+..++..++++|.
T Consensus        98 ~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~  175 (450)
T 2jdq_A           98 LQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS  175 (450)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            6777888999999999999998  9999999999999999765 578888899999999999996 68999999999999


Q ss_pred             HHcCCc--CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCc
Q 003008          256 NLALSK--SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRP  332 (858)
Q Consensus       256 nL~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~  332 (858)
                      +++...  ..+..+. .++++.|+.+++++   .+.++..++++|.+++.+ ++++..+++.|                 
T Consensus       176 ~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-----------------  234 (450)
T 2jdq_A          176 NLCRGKSPPPEFAKV-SPCLNVLSWLLFVS---DTDVLADACWALSYLSDGPNDKIQAVIDAG-----------------  234 (450)
T ss_dssp             HHHCCSSSCCCGGGT-GGGHHHHHHHTTCC---CHHHHHHHHHHHHHHTSSSHHHHHHHHHTT-----------------
T ss_pred             HHhCCCCCCCCHHHH-HHHHHHHHHHHccC---CHHHHHHHHHHHHHHHCCCcHHHHHHHHcC-----------------
Confidence            999764  3333344 78999999999764   355888999999999874 34333333333                 


Q ss_pred             cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcc
Q 003008          333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPID  412 (858)
Q Consensus       333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~  412 (858)
                                                                                                      
T Consensus       235 --------------------------------------------------------------------------------  234 (450)
T 2jdq_A          235 --------------------------------------------------------------------------------  234 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhh
Q 003008          413 RQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLS  491 (858)
Q Consensus       413 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls  491 (858)
                                +++.|+.+|.++++.++..|+++|++++ .+++.++.+.+.|+++.|+.+|+++++.+|..|+++|++++
T Consensus       235 ----------~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~  304 (450)
T 2jdq_A          235 ----------VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT  304 (450)
T ss_dssp             ----------THHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             ----------cHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                      3445556666677888999999999976 45666777888999999999999999999999999999999


Q ss_pred             c-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHH
Q 003008          492 V-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTG  570 (858)
Q Consensus       492 ~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a  570 (858)
                      . +++....+.+.|+++.|+.++.+++  ..++..++++|++++..+ .......+.+.++++.|+.++.+++++++..+
T Consensus       305 ~~~~~~~~~~~~~~~l~~L~~~l~~~~--~~v~~~a~~~L~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  381 (450)
T 2jdq_A          305 AGNRAQIQTVIDANIFPALISILQTAE--FRTRKEAAWAITNATSGG-SAEQIKYLVELGCIKPLCDLLTVMDSKIVQVA  381 (450)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHC-CHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHcCC-CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence            7 7777888889999999999998554  889999999999998621 11222345567899999999999999999999


Q ss_pred             H-HHHHhhccccc-----------hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008          571 N-VIEAAVSETTT-----------SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP  623 (858)
Q Consensus       571 ~-~l~~L~~~~~~-----------~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~  623 (858)
                      + +|.+++.....           .+..+.+.|+++.|..++.+++..+++.|..+|.++...++
T Consensus       382 ~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          382 LNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9 99998753321           12567788999999999999999999999999999875543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.97  E-value=4.2e-28  Score=276.03  Aligned_cols=409  Identities=17%  Similarity=0.178  Sum_probs=331.4

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHhhc--CchhHHHHHhc-CcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cch
Q 003008          147 CINLTVNLLRSESSAACEAAAGLLRSISS--INVYRDLVAEC-GAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKH  222 (858)
Q Consensus       147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~--~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~  222 (858)
                      .++.|++.+.++++.++..|+..|+++..  .++....+.+. |++|.|+++|+++. ++.++..++++|.+++.. +++
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~   99 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQ   99 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHH
Confidence            48899999999999999999999999853  23334556666 99999999999863 789999999999999975 566


Q ss_pred             HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008          223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIEL  301 (858)
Q Consensus       223 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl  301 (858)
                      ...+++.|+++.|+++++++++.+++.|+++|.+++... ..+..+.+.|+++.|+.++++.  ....+++.++++|+++
T Consensus       100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~v~~~a~~~L~~l  177 (450)
T 2jdq_A          100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ--NRLTMTRNAVWALSNL  177 (450)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC--CCHHHHHHHHHHHHHH
Confidence            777889999999999999999999999999999999874 5777888999999999999742  2456888999999998


Q ss_pred             hcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhh
Q 003008          302 AKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNA  381 (858)
Q Consensus       302 ~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~  381 (858)
                      +.+..           +  -...                                                         
T Consensus       178 ~~~~~-----------~--~~~~---------------------------------------------------------  187 (450)
T 2jdq_A          178 CRGKS-----------P--PPEF---------------------------------------------------------  187 (450)
T ss_dssp             HCCSS-----------S--CCCG---------------------------------------------------------
T ss_pred             hCCCC-----------C--CCCH---------------------------------------------------------
Confidence            86421           0  0000                                                         


Q ss_pred             hhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHH
Q 003008          382 MVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFK  460 (858)
Q Consensus       382 li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~  460 (858)
                                                        ..  ..++++.|+.++.++++.++..++++|.+++. .++.+..+.
T Consensus       188 ----------------------------------~~--~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  231 (450)
T 2jdq_A          188 ----------------------------------AK--VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI  231 (450)
T ss_dssp             ----------------------------------GG--TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred             ----------------------------------HH--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence                                              00  02367888899999999999999999999775 567778888


Q ss_pred             HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcc
Q 003008          461 EAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE  539 (858)
Q Consensus       461 ~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~  539 (858)
                      +.|+++.|+.+|.++++.++..|+++|++++. ++..+..+.+.|+++.|+.++.++  +..+++.++++|++++..+  
T Consensus       232 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l~~~~--  307 (450)
T 2jdq_A          232 DAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEACWTISNITAGN--  307 (450)
T ss_dssp             HTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSC--
T ss_pred             HcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCC--
Confidence            99999999999999999999999999999998 566677788889999999999854  4889999999999998611  


Q ss_pred             cccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          540 MKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       540 ~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                                                              .... +.+.+.|++|.|+++|.++++.++..|+++|.+++
T Consensus       308 ----------------------------------------~~~~-~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~  346 (450)
T 2jdq_A          308 ----------------------------------------RAQI-QTVIDANIFPALISILQTAEFRTRKEAAWAITNAT  346 (450)
T ss_dssp             ----------------------------------------HHHH-HHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------HHHH-HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence                                                    1112 55677899999999999999999999999999986


Q ss_pred             cCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHH
Q 003008          620 IIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIK  699 (858)
Q Consensus       620 ~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~  699 (858)
                      .+... ..+                                                                       
T Consensus       347 ~~~~~-~~~-----------------------------------------------------------------------  354 (450)
T 2jdq_A          347 SGGSA-EQI-----------------------------------------------------------------------  354 (450)
T ss_dssp             HHCCH-HHH-----------------------------------------------------------------------
T ss_pred             cCCCH-HHH-----------------------------------------------------------------------
Confidence            42100 000                                                                       


Q ss_pred             HHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcc
Q 003008          700 LLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVV  779 (858)
Q Consensus       700 ~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~  779 (858)
                                                          .    .+...|+++.|+++|++++++++..|+++|.++......
T Consensus       355 ------------------------------------~----~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  394 (450)
T 2jdq_A          355 ------------------------------------K----YLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ  394 (450)
T ss_dssp             ------------------------------------H----HHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------H----HHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Confidence                                                0    011456899999999999999999999999999875432


Q ss_pred             ----------hhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCcc
Q 003008          780 ----------DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSE  821 (858)
Q Consensus       780 ----------~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~  821 (858)
                                ..+..+.+.||++.|..++++++.++++.|..+|.++..+++
T Consensus       395 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          395 EAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             hhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence                      124578899999999999999999999999999999986653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=1e-28  Score=268.06  Aligned_cols=271  Identities=18%  Similarity=0.190  Sum_probs=228.3

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCC---------CCCHHHHHHHHHHHHHhccCcc-hHHHHHh-
Q 003008          160 SAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRP---------SLTSEVKEQSMCTLWNLSVDKK-HRLKIAN-  228 (858)
Q Consensus       160 ~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~---------~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~-  228 (858)
                      .....+|+++|.||+.++++|+.|.+.|++++|+.+|..+         ..++.+++.|+++|.|||.+++ +|..+.. 
T Consensus        46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            3455579999999999999999999999999999999521         1146789999999999997765 7888865 


Q ss_pred             CCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-Ch
Q 003008          229 TDILPLLIKSLEDENMKVKEAAGGVLANLALS--KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DD  305 (858)
Q Consensus       229 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~  305 (858)
                      .|+||+|+++|+++++++++.++++|.||+..  +++|..+++.|+|+.||++|.+..  ++.+++.|+.+|+||+. ++
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHccCh
Confidence            55699999999999999999999999999985  467889999999999999754321  34588999999999999 67


Q ss_pred             hhHHHHH-HcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhh
Q 003008          306 YYRILII-EEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVG  384 (858)
Q Consensus       306 ~~~~~i~-~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~  384 (858)
                      +++..++ ..|+++ +|++++.                      ..+                 +               
T Consensus       204 ~nk~~i~~~~Gai~-~Lv~lL~----------------------~~~-----------------~---------------  228 (354)
T 3nmw_A          204 ENKADICAVDGALA-FLVGTLT----------------------YRS-----------------Q---------------  228 (354)
T ss_dssp             HHHHHHHHSTTHHH-HHHHHTT----------------------CCC-----------------S---------------
T ss_pred             hhhHHHHHhcCcHH-HHHHHhc----------------------cCC-----------------C---------------
Confidence            8888887 688888 4887531                      000                 0               


Q ss_pred             hhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc----CChhhHHHHH
Q 003008          385 RSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS----INEHMRMLFK  460 (858)
Q Consensus       385 ~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~----~~~~~~~~l~  460 (858)
                                                                      .++.+++..|+++|.+++    .++++++.+.
T Consensus       229 ------------------------------------------------~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~  260 (354)
T 3nmw_A          229 ------------------------------------------------TNTLAIIESGGGILRNVSSLIATNEDHRQILR  260 (354)
T ss_dssp             ------------------------------------------------SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ------------------------------------------------cccHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence                                                            001146778889999976    4899999999


Q ss_pred             HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCC
Q 003008          461 EAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPS  537 (858)
Q Consensus       461 ~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~  537 (858)
                      +.|+++.|+.+|++++..+++.|+++|+||+. +++++..+.+.|+++.|+.++...+  ..+++.|+++|.||+...
T Consensus       261 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~--~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH--KMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS--HHHHHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999995 8999999999999999999998554  889999999999999843

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=6.6e-28  Score=261.74  Aligned_cols=265  Identities=16%  Similarity=0.169  Sum_probs=224.0

Q ss_pred             HHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhcCch-hHHHHHh
Q 003008          118 LDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-----------ESSAACEAAAGLLRSISSINV-YRDLVAE  185 (858)
Q Consensus       118 ~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-----------~~~~~~~~a~~aL~nLs~~~~-~~~~i~~  185 (858)
                      ..+..|+++|.|++.++++ ++.++ +.|+++.|+.+|.+           .+++++..|+++|.||+.+++ +|..+..
T Consensus        47 ~~~~~A~~aL~nls~d~e~-R~~i~-~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEH-RHAMN-ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHH-HHHHH-HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHH-HHHHH-HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3466899999999998654 44555 89999999999953           246789999999999998775 8888865


Q ss_pred             -cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cchHHHHHhCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHcC-C
Q 003008          186 -CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIANTDILPLLIKSL-EDENMKVKEAAGGVLANLAL-S  260 (858)
Q Consensus       186 -~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~nL~~-~  260 (858)
                       .|+||.|+++|+++  ++++++.|+++|.||+..  +++|..+++.|++++|+++| +++++++++.++++|+||+. +
T Consensus       125 ~~GaIp~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          125 MKGCMRALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             CHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             cCCcHHHHHHHHCCC--CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence             56699999999998  999999999999999974  56899999999999999975 56789999999999999998 6


Q ss_pred             cCchHHHH-hCCCHHHHHHHHccCCCC-CHHHHHHHHHHHHHHhc----ChhhHHHHHHcCCcccccccccccccCCccC
Q 003008          261 KSNHNILV-EAGVIPKLAMLLKANVEG-SKVIRKEARNALIELAK----DDYYRILIIEEGLVPVPMVGADAYKSFRPEL  334 (858)
Q Consensus       261 ~~~~~~i~-~~g~i~~Lv~ll~~~~~~-~~~~~~~a~~aL~nl~~----~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l  334 (858)
                      ++++..++ ..|+++.|+++|+++++. ...+++.|+++|+||+.    +++++..+++.|+++ +|++           
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~-~Lv~-----------  270 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ-TLLQ-----------  270 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHH-HHHH-----------
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHH-HHHH-----------
Confidence            68888887 789999999999876432 11378899999999985    677777777777666 3554           


Q ss_pred             CCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccc
Q 003008          335 HSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQ  414 (858)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~  414 (858)
                                                                                                      
T Consensus       271 --------------------------------------------------------------------------------  270 (354)
T 3nmw_A          271 --------------------------------------------------------------------------------  270 (354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC
Q 003008          415 LTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS  493 (858)
Q Consensus       415 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~  493 (858)
                                     +|.+++.+++..|+++|+|++ .++++++.+++.|++++|+.||+++++.+++.|+++|.||+.+
T Consensus       271 ---------------lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          271 ---------------HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             ---------------HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             ---------------HHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence                           444556678999999999987 6899999999999999999999999999999999999999984

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.2e-25  Score=253.00  Aligned_cols=491  Identities=12%  Similarity=0.074  Sum_probs=337.6

Q ss_pred             HHHHHHHhhc-Cch-hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCC
Q 003008          166 AAGLLRSISS-INV-YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDEN  243 (858)
Q Consensus       166 a~~aL~nLs~-~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~  243 (858)
                      +..+|..+-- .++ ....+...|..+.+.+.+.+.. +..+...++..|...|.+..+|..| ..++++.|.+++++  
T Consensus       232 ~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~-~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--  307 (778)
T 3opb_A          232 IVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQ-DLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--  307 (778)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSC-CHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--
T ss_pred             HHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhccc-chHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--
Confidence            4555554422 223 5555666888999998886542 6667777777777778888787777 56778999999976  


Q ss_pred             HHHHHHHHHHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCC-ccccc
Q 003008          244 MKVKEAAGGVLANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGL-VPVPM  321 (858)
Q Consensus       244 ~~~~~~a~~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~-v~~~L  321 (858)
                      ..++..|+-+|..+...+.... .+.+  ..+.++++|.+..   ..-++.|+..|.-++.+++.|..+++..+ +.. |
T Consensus       308 ~~ir~lAavvL~KL~~~~~~~~~si~~--La~~~~~~L~~~~---~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~-L  381 (778)
T 3opb_A          308 EDVQIYSALVLVKTWSFTKLTCINLKQ--LSEIFINAISRRI---VPKVEMSVEALAYLSLKASVKIMIRSNESFTEI-L  381 (778)
T ss_dssp             GGGHHHHHHHHHHHTGGGTCTTCCHHH--HHHHHHHHTTTCC---HHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcCcHHH--HHHHHHHHHhcCC---ccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHH-H
Confidence            4788899999999876543221 1211  4456666665532   12478999999999999999998888644 775 8


Q ss_pred             ccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccC
Q 003008          322 VGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESED  401 (858)
Q Consensus       322 v~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~  401 (858)
                      ++++.                     .+.+.+..++++..|.||+...++.......+..+                   
T Consensus       382 v~llk---------------------~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~L-------------------  421 (778)
T 3opb_A          382 LTMIK---------------------SQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXX-------------------  421 (778)
T ss_dssp             HHHHT---------------------TTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------------
T ss_pred             HHHHh---------------------CCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhh-------------------
Confidence            88641                     11234678889999999976553211101111111                   


Q ss_pred             CCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHH
Q 003008          402 GRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVR  480 (858)
Q Consensus       402 ~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~  480 (858)
                                                -.+.+...++...... .+-+-. ..+.++..+.+.|+++.|+.+++++++.+|
T Consensus       422 --------------------------k~~A~~~~p~~~~~d~-~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~r  474 (778)
T 3opb_A          422 --------------------------XXXXXXXXPAADKVGA-EKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCK  474 (778)
T ss_dssp             ---------------------------------------CCT-HHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHH
T ss_pred             --------------------------hhhccccCcccCcccc-cccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHH
Confidence                                      1111110011000000 011111 122356778899999999999999999999


Q ss_pred             HHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCcc-HHHHHHHHHHHHHhcCCCccccccccc-ccCcCcHHHHHh
Q 003008          481 LATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDIS-ESLMEKTLDILGRILDPSKEMKSKFYD-IPVNGSEKGLDA  558 (858)
Q Consensus       481 ~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~i-~~~~~i~~Li~l  558 (858)
                      ..++++|.||+.++++|..++++|++++|+.++...+.. ...++.|+.+|.+++... ++..-..- ...+++++|+++
T Consensus       475 e~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~-np~~~f~~~~~~~aI~pLv~L  553 (778)
T 3opb_A          475 QQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT-NPGLIFKKYSALNAIPFLFEL  553 (778)
T ss_dssp             HHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS-CHHHHSSSSCSTTHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC-CHHHHcCCCccccchHHHHHH
Confidence            999999999999999999999999999999999855421 237999999999998521 11110000 113899999999


Q ss_pred             hcC-CChh------------H-HHHHH-HHHHhhccc-----cchhhhHhhc-cchhHHHHhhcCCCHHHHHHHHHHHHH
Q 003008          559 AES-LDPS------------I-ELTGN-VIEAAVSET-----TTSYGKVLDS-VFIGRMIGIMKTSYPDLQRKAASILEF  617 (858)
Q Consensus       559 l~s-~d~~------------v-~~~a~-~l~~L~~~~-----~~~~~~i~~~-g~i~~L~~lL~s~~~~v~~~a~~~L~~  617 (858)
                      |.. ++.+            . +.+|+ +|.||+...     +.+ ..+++. |++|.|..+|.+++..+|+.|++++.|
T Consensus       554 L~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r-~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~N  632 (778)
T 3opb_A          554 LPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC-KHIVSTKVYWSTIENLMLDENVPLQRSTLELISN  632 (778)
T ss_dssp             SCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             cCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHH-HHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            982 2211            1 66888 999999765     336 667774 999999999999999999999999999


Q ss_pred             hhcCCcch-HHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHH
Q 003008          618 ITIIDPSM-DTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTH  696 (858)
Q Consensus       618 l~~~~~~~-~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~  696 (858)
                      |+.+++.. ..+            +      +                                      .         
T Consensus       633 L~~~~e~i~~k~------------~------~--------------------------------------~---------  647 (778)
T 3opb_A          633 MMSHPLTIAAKF------------F------N--------------------------------------L---------  647 (778)
T ss_dssp             HHTSGGGTGGGT------------S------C--------------------------------------C---------
T ss_pred             HhCCcHHHHHHH------------H------h--------------------------------------h---------
Confidence            98755432 111            0      0                                      0         


Q ss_pred             HHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhc
Q 003008          697 FIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISE  776 (858)
Q Consensus       697 ~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~  776 (858)
                                                             ..    ....+.+++||.++.+++.++|.+|++||+|++..
T Consensus       648 ---------------------------------------~~----~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~  684 (778)
T 3opb_A          648 ---------------------------------------EN----PQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT  684 (778)
T ss_dssp             ---------------------------------------SS----HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------cC----chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence                                                   00    00123578999999999999999999999999876


Q ss_pred             CcchhhHHHHhc-CCchHHHHHhhc--CChHHHHHHHHHHHhhhcC----c--cchHHHH-HcCchHHHHHhhhcCCh
Q 003008          777 GVVDSTRAVASE-GGIFPLVKLIEE--GSNRAVEAGLAILYNLSMD----S--ENHSAII-AAGAVPALRRIVLSQRP  844 (858)
Q Consensus       777 ~~~~~~~~l~~~-g~i~~Lv~lL~~--~~~~v~~~a~~aL~nL~~~----~--~~~~~i~-~~g~v~~L~~ll~~~~~  844 (858)
                      .+. .++.+++. +|++.++++|++  ++++++..++.+++||+..    .  +....+. .......|.+++++++.
T Consensus       685 ~~~-ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~  761 (778)
T 3opb_A          685 IPL-IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDS  761 (778)
T ss_dssp             CHH-HHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSS
T ss_pred             ChH-HHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCc
Confidence            655 67888876 899999999999  8999999999999999962    1  2233444 44566777788777654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.7e-25  Score=253.98  Aligned_cols=403  Identities=11%  Similarity=0.030  Sum_probs=308.7

Q ss_pred             cccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 003008           97 STFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI  176 (858)
Q Consensus        97 ~~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~  176 (858)
                      -...+|.++.+...+....+ .....++.-|.+.+..+..++ ..+ ..++++.|..++++  ++++..|+.+|..|...
T Consensus       250 lfl~e~~~~~l~~~~~~~~~-~~~~~a~L~lLsaACi~~~cR-~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~  324 (778)
T 3opb_A          250 IFLTKGLSKLFKKRVFEEQD-LQFTKELLRLLSSACIDETMR-TYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSF  324 (778)
T ss_dssp             HHSTTTHHHHHHHHHHSSCC-HHHHHHHHHHHHHHCCSHHHH-HHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGG
T ss_pred             HHccccHHHHHHHHHhcccc-hHHHHHHHHHHHHHhCCcHHH-HHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcC
Confidence            34578889999988863444 445566677777777788875 555 47888999999976  57888899999998664


Q ss_pred             ch-hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH-hCCCHHHHHHHHcc-CCHHHHHHHHHH
Q 003008          177 NV-YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA-NTDILPLLIKSLED-ENMKVKEAAGGV  253 (858)
Q Consensus       177 ~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~-~~~~~~~~a~~~  253 (858)
                      .. ....+.+  ..+.+.+.|..+  +...++.|++.|.+|+.+++.|..++ +.|+++.|+++++. ++..+...++.+
T Consensus       325 ~~~~~~si~~--La~~~~~~L~~~--~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~I  400 (778)
T 3opb_A          325 TKLTCINLKQ--LSEIFINAISRR--IVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVI  400 (778)
T ss_dssp             GTCTTCCHHH--HHHHHHHHTTTC--CHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHH
T ss_pred             CCCCcCcHHH--HHHHHHHHHhcC--CccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            42 2222222  467788888886  66669999999999999999999999 56779999999995 677899999999


Q ss_pred             HHHHcCCcC---------------------------------------chHHHHhCCCHHHHHHHHccCCCCCHHHHHHH
Q 003008          254 LANLALSKS---------------------------------------NHNILVEAGVIPKLAMLLKANVEGSKVIRKEA  294 (858)
Q Consensus       254 L~nL~~~~~---------------------------------------~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a  294 (858)
                      |.||+...+                                       ++..+.+.|++|.|+.+++++   ++.+++.+
T Consensus       401 L~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~---s~~~re~A  477 (778)
T 3opb_A          401 MANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL---SPNCKQQV  477 (778)
T ss_dssp             HHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS---CHHHHHHH
T ss_pred             HHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC---CHHHHHHH
Confidence            999986422                                       234668899999999999886   55699999


Q ss_pred             HHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCC---chhhHHHHHHhccCCCCCC
Q 003008          295 RNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQG---PSKFGANELLLGLNVSDKN  371 (858)
Q Consensus       295 ~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~a~~aL~nL~~~~~~  371 (858)
                      +++|.||+.++++|..+++.|+++ +|++++.                      .+..   ..+..|+.+|.++....+.
T Consensus       478 ~~aL~nLS~d~~~R~~lvqqGal~-~LL~lL~----------------------s~~~~~~~~k~~AA~ALArLlis~np  534 (778)
T 3opb_A          478 VRIIYNITRSKNFIPQLAQQGAVK-IILEYLA----------------------NKQDIGEPIRILGCRALTRMLIFTNP  534 (778)
T ss_dssp             HHHHHHHHTSGGGHHHHHHTTHHH-HHHHHTT----------------------CC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCHH-HHHHHHh----------------------cCCCcchHHHHHHHHHHHHHHhcCCH
Confidence            999999999999999999999999 6999741                      1110   2456689999988543310


Q ss_pred             ccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCC-CCH-------------H
Q 003008          372 ANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGL-EDE-------------R  437 (858)
Q Consensus       372 ~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~-------------~  437 (858)
                                                              ...|......+++++|+.||.. ++.             -
T Consensus       535 ----------------------------------------~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l  574 (778)
T 3opb_A          535 ----------------------------------------GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT  574 (778)
T ss_dssp             ----------------------------------------HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred             ----------------------------------------HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence                                                    0011110112689999999983 221             2


Q ss_pred             HHHHHHHHHHHhcCCh-----hhHHHHHHc-CcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHH-HHHHHc------C
Q 003008          438 AIARAAESIADISINE-----HMRMLFKEA-GAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVC-QIMEAE------G  504 (858)
Q Consensus       438 v~~~a~~aL~~l~~~~-----~~~~~l~~~-g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~-~~l~~~------g  504 (858)
                      -+..|+.+|.|++..+     +.|..++.. |+++.|..+|.+++..+|++|++++.||+.+++.+ ..+...      +
T Consensus       575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~  654 (778)
T 3opb_A          575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR  654 (778)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence            2779999999977544     558888885 99999999999999999999999999999988764 344322      2


Q ss_pred             ChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccC-cCcHHHHHhhcC--CChhHHHHHH-HHHHhhc
Q 003008          505 VVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPV-NGSEKGLDAAES--LDPSIELTGN-VIEAAVS  578 (858)
Q Consensus       505 ~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~-~~i~~Li~ll~s--~d~~v~~~a~-~l~~L~~  578 (858)
                      .++.|+.++..  ++..+|+.|+++|++++..  .......+.+. +|++.++.++.+  ++++++.+++ +++||+.
T Consensus       655 rL~lLV~Ll~s--~D~~~r~AAagALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          655 NFNILVKLLQL--SDVESQRAVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHGGGC--SCHHHHHHHHHHHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHcC--CCHHHHHHHHHHHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            47899999974  4599999999999999531  22233344454 799999999998  8999999999 9999985

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.90  E-value=3.8e-22  Score=207.64  Aligned_cols=236  Identities=27%  Similarity=0.316  Sum_probs=208.6

Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchH
Q 003008          146 GCINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHR  223 (858)
Q Consensus       146 g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~  223 (858)
                      |+++.|+.+|++++++++..|+++|.+++..+ +++..+.+.|+++.|+++|+++  ++.++..++++|.|++.+ ++++
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHH
Confidence            78999999999999999999999999998876 5999999999999999999998  999999999999999987 7789


Q ss_pred             HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc-CCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 003008          224 LKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA-LSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELA  302 (858)
Q Consensus       224 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~  302 (858)
                      ..+.+.|+++.|+.++++++++++..++++|.+|+ ..++.+..+.+.|+++.|+++++++   .+.++..++.+|+|++
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~---~~~~~~~a~~~L~~l~  156 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIA  156 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 5677888899999999999999865   4568999999999999


Q ss_pred             cC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhh
Q 003008          303 KD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNA  381 (858)
Q Consensus       303 ~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~  381 (858)
                      .+ +.++..+.+.|+++                                                               
T Consensus       157 ~~~~~~~~~~~~~~~i~---------------------------------------------------------------  173 (252)
T 4hxt_A          157 SGPDEAIKAIVDAGGVE---------------------------------------------------------------  173 (252)
T ss_dssp             TSCHHHHHHHHHTTHHH---------------------------------------------------------------
T ss_pred             cCCHHHHHHHHHCcCHH---------------------------------------------------------------
Confidence            74 45445555555444                                                               


Q ss_pred             hhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHH
Q 003008          382 MVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFK  460 (858)
Q Consensus       382 li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~  460 (858)
                                                                  .|+.++.++++.++..|+++|++++ .+++.+..+.
T Consensus       174 --------------------------------------------~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  209 (252)
T 4hxt_A          174 --------------------------------------------VLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIV  209 (252)
T ss_dssp             --------------------------------------------HHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred             --------------------------------------------HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                                                        4445556667789999999999976 4778888999


Q ss_pred             HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC
Q 003008          461 EAGAIKYLVKLLDHSSDAVRLATTHALERLSVS  493 (858)
Q Consensus       461 ~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~  493 (858)
                      +.|+++.|+.+++++++.+++.|+++|+||+..
T Consensus       210 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          210 DAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999873

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.90  E-value=1.9e-22  Score=209.88  Aligned_cols=238  Identities=24%  Similarity=0.285  Sum_probs=211.1

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-chhH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI-NVYR  180 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-~~~~  180 (858)
                      |.++.|+.+|+ ++++++|..|+++|.+++.+....+..++ +.|+++.|+++|++++++++..++++|.+|+.+ ++++
T Consensus         2 ~~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence            67999999998 88899999999999999988775555555 799999999999999999999999999999997 6799


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008          181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL  259 (858)
Q Consensus       181 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~  259 (858)
                      ..+.+.|+++.|+.+++++  ++.++..++++|.||+ .+++++..+.+.|+++.|+++++++++.++..++++|.||+.
T Consensus        80 ~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999999987  9999999999999999 677889999999999999999999999999999999999998


Q ss_pred             Cc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCC
Q 003008          260 SK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSW  337 (858)
Q Consensus       260 ~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~  337 (858)
                      .. ..+..+.+.|+++.|+.+++++   .+.++..++.+|++++. ++.++..+.+.|+++. |++++            
T Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~-L~~ll------------  221 (252)
T 4hxt_A          158 GPDEAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPTSAIKAIVDAGGVEV-LQKLL------------  221 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHH-HHHGG------------
T ss_pred             CCHHHHHHHHHCcCHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH-HHHHH------------
Confidence            65 4456888999999999999864   45699999999999998 6788899999999994 99864            


Q ss_pred             CCCCCcchhhcccCCchhhHHHHHHhccCCCC
Q 003008          338 PSLPDGTEIERTSQGPSKFGANELLLGLNVSD  369 (858)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~  369 (858)
                                +.++...+..++++|+|+....
T Consensus       222 ----------~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          222 ----------TSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             ----------GCSCHHHHHHHHHHHHHHHHTC
T ss_pred             ----------CCCcHHHHHHHHHHHHHHHcCC
Confidence                      2233366777999999996544

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.89  E-value=2.2e-22  Score=209.78  Aligned_cols=238  Identities=22%  Similarity=0.268  Sum_probs=207.7

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc-Cch
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISS-INV  178 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~-~~~  178 (858)
                      +....+.++++|. ++|+++|..|+++|.++.......++.++ +.|+++.|+.+|++++++++..|+++|.+|+. +++
T Consensus        10 ~~~~~~~~~~~L~-s~~~~~~~~a~~~L~~~l~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (252)
T 4db8_A           10 HGSELPQMTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (252)
T ss_dssp             TTCSHHHHHHHHH-SSCSSHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCCchHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence            4556799999998 88889999999999876664444444555 79999999999999999999999999999998 557


Q ss_pred             hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchH-HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008          179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR-LKIANTDILPLLIKSLEDENMKVKEAAGGVLANL  257 (858)
Q Consensus       179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL  257 (858)
                      ++..+.+.|+++.|+++|+++  ++.+++.|+++|.||+.+++++ ..+.+.|+++.|+++++++++.++..++++|.||
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  165 (252)
T 4db8_A           88 QIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI  165 (252)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998  9999999999999999999887 8888999999999999999999999999999999


Q ss_pred             cCCc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCC
Q 003008          258 ALSK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELH  335 (858)
Q Consensus       258 ~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~  335 (858)
                      +..+ +.+..+.+.|+++.|+++++++   .+.+++.|+.+|.|++. ++.++..+++.|+++ .|++++          
T Consensus       166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~-~L~~ll----------  231 (252)
T 4db8_A          166 ASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQAVKEAGALE-KLEQLQ----------  231 (252)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHGGGCS---SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH-HHHTTT----------
T ss_pred             HcCChHHHHHHHHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH-HHHHHh----------
Confidence            9864 5566788899999999999875   45689999999999996 678899999999999 499863          


Q ss_pred             CCCCCCCcchhhcccCCchhhHHHHHHhccCC
Q 003008          336 SWPSLPDGTEIERTSQGPSKFGANELLLGLNV  367 (858)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~  367 (858)
                                  +.++...+..|+++|+|++.
T Consensus       232 ------------~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          232 ------------SHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             ------------TCSSSHHHHTHHHHHHTTC-
T ss_pred             ------------CCCCHHHHHHHHHHHHHHhc
Confidence                        22344667779999999963

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.89  E-value=7.9e-22  Score=205.62  Aligned_cols=236  Identities=23%  Similarity=0.347  Sum_probs=206.8

Q ss_pred             cCcHHHHHHHHccCCHHHHHHHHHHHHHh-hcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-Ccch
Q 003008          145 SGCINLTVNLLRSESSAACEAAAGLLRSI-SSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKH  222 (858)
Q Consensus       145 ~g~i~~Li~lL~~~~~~~~~~a~~aL~nL-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~  222 (858)
                      ....+.++..|.+++++++..|+++|.++ +.+++++..+.+.|+++.|+++|+++  ++.++..|+++|.|++. ++++
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~   88 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQ   88 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHH
Confidence            45689999999999999999999999776 44557899999999999999999998  89999999999999997 6788


Q ss_pred             HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCch-HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008          223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIEL  301 (858)
Q Consensus       223 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl  301 (858)
                      +..+.+.|+++.|+.+|+++++.+++.++++|.||+.++..+ ..+.+.|+++.|+++|+++   .+.++..++++|+|+
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l  165 (252)
T 4db8_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNI  165 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888 7889999999999999775   456899999999999


Q ss_pred             hc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHh
Q 003008          302 AK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMN  380 (858)
Q Consensus       302 ~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~  380 (858)
                      +. ++.++..+++.|+++. |+                                                          
T Consensus       166 ~~~~~~~~~~~~~~~~i~~-L~----------------------------------------------------------  186 (252)
T 4db8_A          166 ASGGNEQIQAVIDAGALPA-LV----------------------------------------------------------  186 (252)
T ss_dssp             TTSCHHHHHHHHHTTCHHH-HH----------------------------------------------------------
T ss_pred             HcCChHHHHHHHHCCCHHH-HH----------------------------------------------------------
Confidence            98 4555555666665552 44                                                          


Q ss_pred             hhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHH
Q 003008          381 AMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLF  459 (858)
Q Consensus       381 ~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l  459 (858)
                                                                      .+|.++++.++..|+++|++++ .+++.+..+
T Consensus       187 ------------------------------------------------~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  218 (252)
T 4db8_A          187 ------------------------------------------------QLLSSPNEQILQEALWALSNIASGGNEQKQAV  218 (252)
T ss_dssp             ------------------------------------------------HGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             ------------------------------------------------HHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence                                                            4445556778899999999976 678888899


Q ss_pred             HHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008          460 KEAGAIKYLVKLLDHSSDAVRLATTHALERLSV  492 (858)
Q Consensus       460 ~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~  492 (858)
                      .+.|+++.|+.++.++++.+++.|+++|+||+.
T Consensus       219 ~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          219 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999975

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=1.7e-22  Score=203.87  Aligned_cols=199  Identities=18%  Similarity=0.167  Sum_probs=171.0

Q ss_pred             CCcHHHHHHHhcCCCCH--HHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-c
Q 003008          101 DSYVALFVQMLGLDYDP--LDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI-N  177 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~--~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-~  177 (858)
                      .-.+|.++.+|+ ++|+  +++..|+++|.+++..++..+..++ +.|+||.|+++|+++++++++.|+++|+||+.. +
T Consensus         7 ~~~i~~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~-~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~   84 (233)
T 3tt9_A            7 EMTLERAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVN-QLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN   84 (233)
T ss_dssp             CCCHHHHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH-HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             hccHHHHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            345899999998 7776  8899999999999987665555555 799999999999999999999999999999984 6


Q ss_pred             hhHHHHHhcCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc----------------
Q 003008          178 VYRDLVAECGAIEEITGLLT-RPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE----------------  240 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~----------------  240 (858)
                      ++|..|.+.|+||+|+++|+ ++  +..+++.++.+|+|||..+++|..|++. ++++|+.++.                
T Consensus        85 ~nk~~I~~~GaI~~Lv~lL~~~~--~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~  161 (233)
T 3tt9_A           85 DNKLEVAELNGVPRLLQVLKQTR--DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANG  161 (233)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHccCC--CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccc
Confidence            89999999999999999998 45  8999999999999999999999999875 6999998763                


Q ss_pred             cCCHHHHHHHHHHHHHHcCC-cCchHHHHhC-CCHHHHHHHHccC---CCCCHHHHHHHHHHHHHHhcC
Q 003008          241 DENMKVKEAAGGVLANLALS-KSNHNILVEA-GVIPKLAMLLKAN---VEGSKVIRKEARNALIELAKD  304 (858)
Q Consensus       241 ~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~-g~i~~Lv~ll~~~---~~~~~~~~~~a~~aL~nl~~~  304 (858)
                      ..+++++++|+.+|+||+.. ++.|..+++. |.|+.||.+++.+   ...+...+++|+.+|+|||..
T Consensus       162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            12668999999999999985 5899999886 5689999999863   112335789999999999963

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.86  E-value=1.5e-20  Score=190.14  Aligned_cols=199  Identities=25%  Similarity=0.335  Sum_probs=176.2

Q ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc-Cc
Q 003008           99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISS-IN  177 (858)
Q Consensus        99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~-~~  177 (858)
                      ...|..+.|+.+|+ ++|+.++..|+++|.+++.++...+..++ +.|+++.|+++|++++++++..|+++|.||+. ++
T Consensus         9 ~~~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~   86 (210)
T 4db6_A            9 HHGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGN   86 (210)
T ss_dssp             ----CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             cccchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence            35788899999998 88999999999999999977766655555 79999999999999999999999999999996 45


Q ss_pred             hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008          178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN  256 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n  256 (858)
                      +++..+.+.|+++.|+.+|+++  ++.+++.|+++|+|++.+ ++.+..+.+.|+++.|+++++++++.++..++++|.|
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  164 (210)
T 4db6_A           87 EQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN  164 (210)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            7999999999999999999998  999999999999999964 4567788899999999999999999999999999999


Q ss_pred             HcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008          257 LALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD  304 (858)
Q Consensus       257 L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~  304 (858)
                      ++.. ++.+..+.+.|+++.|+++++++   .+.+++.|+.+|.+|+.+
T Consensus       165 l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          165 IASGGNEQKQAVKEAGALEKLEQLQSHE---NEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHCC-
T ss_pred             HHcCCcHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHhcC
Confidence            9987 67777889999999999999865   456999999999999853

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.84  E-value=7.9e-21  Score=191.72  Aligned_cols=202  Identities=17%  Similarity=0.185  Sum_probs=168.2

Q ss_pred             CcHHHHHHHHccCCH--HHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-Ccc
Q 003008          146 GCINLTVNLLRSESS--AACEAAAGLLRSISS-INVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKK  221 (858)
Q Consensus       146 g~i~~Li~lL~~~~~--~~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~  221 (858)
                      -.+|.|+++|+++++  +++..|++.|.+|+. ++++|..|.+.|+||+|+++|+++  ++.+++.|+++|.||+. +++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ--NEDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHH
Confidence            358999999999987  888899999999996 557999999999999999999998  99999999999999997 578


Q ss_pred             hHHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHc---cCC----------CCC
Q 003008          222 HRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLK---ANV----------EGS  287 (858)
Q Consensus       222 ~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~---~~~----------~~~  287 (858)
                      +|..|++.|+||+|+++|++ ++.++++.++.+|+||+..+.+|..+++ +++++|++++.   +|.          ...
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence            99999999999999999984 6899999999999999999999998887 46999998653   221          113


Q ss_pred             HHHHHHHHHHHHHHhc-ChhhHHHHHHcC-CcccccccccccccCCccCCCCCCCCCcchhh-cccCCchhhHHHHHHhc
Q 003008          288 KVIRKEARNALIELAK-DDYYRILIIEEG-LVPVPMVGADAYKSFRPELHSWPSLPDGTEIE-RTSQGPSKFGANELLLG  364 (858)
Q Consensus       288 ~~~~~~a~~aL~nl~~-~~~~~~~i~~~g-~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~a~~aL~n  364 (858)
                      ..++++|..+|+||+. ++++|+.|++++ +|+ .|+.++.  ..               .- ...+...+..|+.+|+|
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~-~Lv~~l~--~~---------------~~~~~~~~k~~En~v~~L~n  226 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLID-SLVHYVR--GT---------------IADYQPDDKATENCVCILHN  226 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHH-HHHHHHH--HH---------------HHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHH-HHHHHHH--hh---------------hhcccchhHHHHHHHHHHHH
Confidence            4689999999999998 679999999975 568 5998741  00               00 01122456679999999


Q ss_pred             cCCC
Q 003008          365 LNVS  368 (858)
Q Consensus       365 L~~~  368 (858)
                      |+..
T Consensus       227 Ls~~  230 (233)
T 3tt9_A          227 LSYQ  230 (233)
T ss_dssp             HCCC
T ss_pred             HHhh
Confidence            9754

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.83  E-value=1.9e-19  Score=181.99  Aligned_cols=195  Identities=16%  Similarity=0.172  Sum_probs=175.6

Q ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHH
Q 003008          421 IDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQ  498 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~  498 (858)
                      ++..+.|+.+|++++++++..|+++|.+++ .+++.+..+++.|+++.|+.+|+++++.++..|+++|+|++. +++++.
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            458899999999999999999999999977 788899999999999999999999999999999999999996 788999


Q ss_pred             HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008          499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAV  577 (858)
Q Consensus       499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~  577 (858)
                      .+.+.|+++.|+.+|.+++  ..+++.++++|+|++..  .......+.+.|+++.|++++.+++++++..++ +|.+++
T Consensus        91 ~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPN--EQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSC--HHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCc--HHHHHHHHHHHHHHHcC--CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998554  89999999999999973  222334567789999999999999999999999 999999


Q ss_pred             cc-ccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008          578 SE-TTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI  620 (858)
Q Consensus       578 ~~-~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~  620 (858)
                      .. ...+ ..+.+.|+++.|++++.++++.+++.|+++|.+++.
T Consensus       167 ~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SGGNEQK-QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TSCHHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cCCcHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            77 4455 888999999999999999999999999999999874

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.78  E-value=1.2e-16  Score=187.81  Aligned_cols=570  Identities=11%  Similarity=0.067  Sum_probs=360.4

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 003008          104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLV  183 (858)
Q Consensus       104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i  183 (858)
                      +..++..|+ ++|+.+|..|+..|..++..-..  ....  ...++.|...+ ++++++|..++..|..+...-....  
T Consensus        12 i~~l~~~l~-s~~~~~R~~A~~~l~~i~~~~~~--~~~~--~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~--   83 (588)
T 1b3u_A           12 IAVLIDELR-NEDVQLRLNSIKKLSTIALALGV--ERTR--SELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPE--   83 (588)
T ss_dssp             HHHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCH--HHHH--HTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGG--
T ss_pred             HHHHHHHhh-cccHHHHHHHHHhHHHHHHHhCH--HHHH--HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHH--
Confidence            778999998 89999999999999887642221  1111  34566666555 6788999999999988764311110  


Q ss_pred             HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCc
Q 003008          184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN  263 (858)
Q Consensus       184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~  263 (858)
                      .....++.|..++.++  ++.++..|+.+|.+++..-...  ....-.++.+.++..+++..++..++.++..++..-..
T Consensus        84 ~~~~ll~~L~~l~~~~--~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~  159 (588)
T 1b3u_A           84 YVHCLLPPLESLATVE--ETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS  159 (588)
T ss_dssp             GGGGGHHHHHHHTTSS--CHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH
T ss_pred             HHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH
Confidence            1133567777777776  9999999999999998543221  11223466677777777889999999999998765332


Q ss_pred             hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCc
Q 003008          264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDG  343 (858)
Q Consensus       264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~  343 (858)
                      .   .....++.+.++++..   .+.+|..++.+|..++..-...  ......++. |..++                  
T Consensus       160 ~---~~~~l~~~l~~l~~d~---~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~-l~~~~------------------  212 (588)
T 1b3u_A          160 A---VKAELRQYFRNLCSDD---TPMVRRAAASKLGEFAKVLELD--NVKSEIIPM-FSNLA------------------  212 (588)
T ss_dssp             H---HHHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHH-HHHHH------------------
T ss_pred             H---HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHH-HHHHh------------------
Confidence            1   1234567777777543   5669999999999998742211  112233442 44331                  


Q ss_pred             chhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccccc
Q 003008          344 TEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDG  423 (858)
Q Consensus       344 ~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  423 (858)
                          ...+...+..++.+|..++...                         +               +..     .....
T Consensus       213 ----~d~~~~vr~~a~~~l~~l~~~~-------------------------~---------------~~~-----~~~~~  243 (588)
T 1b3u_A          213 ----SDEQDSVRLLAVEACVNIAQLL-------------------------P---------------QED-----LEALV  243 (588)
T ss_dssp             ----TCSCHHHHTTHHHHHHHHHHHS-------------------------C---------------HHH-----HHHHT
T ss_pred             ----cCCcHHHHHHHHHHHHHHHHhC-------------------------C---------------HHH-----HHHHH
Confidence                1111123333444444432110                         0               000     00125


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHH
Q 003008          424 VARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIME  501 (858)
Q Consensus       424 i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~  501 (858)
                      ++.+..+++++++.+|..++.+|+.++.....  .......++.+..+++++++.+|..++.+|+.++..  ++.+....
T Consensus       244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  321 (588)
T 1b3u_A          244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI  321 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence            67777888999999999999999996531111  123456799999999999999999999999999862  22222122


Q ss_pred             HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008          502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET  580 (858)
Q Consensus       502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~  580 (858)
                      -...+|.+..++.+++  ..++..++.+|..++.   .....  ......++.+..++.+++++++..++ ++..+....
T Consensus       322 ~~~l~p~l~~~l~d~~--~~vR~~a~~~l~~l~~---~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          322 MSQILPCIKELVSDAN--QHVKSALASVIMGLSP---ILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHTHHHHHHHHHTCSC--HHHHHHHHTTGGGGHH---HHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHH---HhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence            3456788888887554  7899999988888764   11100  01123567888999999999999988 776665432


Q ss_pred             cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCc
Q 003008          581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEK  660 (858)
Q Consensus       581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~  660 (858)
                      ...   ......+|.+..++.+.+..++..++.++..++..-...  +   ....-+..++  ..+.+.+.         
T Consensus       395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~---~~~~l~~~l~--~~l~d~~~---------  455 (588)
T 1b3u_A          395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--F---FDEKLNSLCM--AWLVDHVY---------  455 (588)
T ss_dssp             CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--G---CCHHHHHHHH--HGGGCSSH---------
T ss_pred             CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--H---HHHHHHHHHH--HHhcCCcH---------
Confidence            211   122356788999999999999999999998886421110  0   0000111111  11211111         


Q ss_pred             cchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchh
Q 003008          661 YALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINM  740 (858)
Q Consensus       661 ~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  740 (858)
                                                    ..                     +.....++..+..          .++.
T Consensus       456 ------------------------------~V---------------------r~~a~~~l~~l~~----------~~~~  474 (588)
T 1b3u_A          456 ------------------------------AI---------------------REAATSNLKKLVE----------KFGK  474 (588)
T ss_dssp             ------------------------------HH---------------------HHHHHHHHHHHHH----------HHCH
T ss_pred             ------------------------------HH---------------------HHHHHHHHHHHHH----------HhCc
Confidence                                          00                     0001111111110          0000


Q ss_pred             hhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCc
Q 003008          741 EVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDS  820 (858)
Q Consensus       741 ~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~  820 (858)
                      .......+|.|+.++.+++..+|..++.++..+...-..    .......++.|+++++++++.||..++.+|..+...-
T Consensus       475 ~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  550 (588)
T 1b3u_A          475 EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL  550 (588)
T ss_dssp             HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred             hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHh
Confidence            000123578888888899999999999999988643211    2234467799999999999999999999999997542


Q ss_pred             cchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008          821 ENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL  856 (858)
Q Consensus       821 ~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l  856 (858)
                      .  .......++|.|..++.++++.+ +.|..++..+
T Consensus       551 ~--~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l  585 (588)
T 1b3u_A          551 D--NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             C--HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             c--hhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence            1  12334567888999999999998 7777777765

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.77  E-value=9.2e-18  Score=177.11  Aligned_cols=194  Identities=20%  Similarity=0.258  Sum_probs=167.7

Q ss_pred             HHHHHHHhcCCC------------CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHH
Q 003008          104 VALFVQMLGLDY------------DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVN-LLRSESSAACEAAAGLL  170 (858)
Q Consensus       104 i~~lv~lL~~s~------------d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~-lL~~~~~~~~~~a~~aL  170 (858)
                      ++..+..|. ++            +.+.+..|+..|.+++.+.++. ..++ +.|+++.|+. +|.++++.++..|+++|
T Consensus        30 mk~~l~vl~-~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna-~~~~-~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L  106 (296)
T 1xqr_A           30 MKSCLRVLS-QPMPPTAGEAEQAADQQEREGALELLADLCENMDNA-ADFC-QLSGMHLLVGRYLEAGAAGLRWRAAQLI  106 (296)
T ss_dssp             HHHHHHHHH-SCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHH-HHHH-HTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHh-CCCcccccccccCCCHHHHHHHHHHHHHHHhChhhH-HHHH-HcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            566777776 43            2256788999999999876653 4555 7999999999 99999999999999999


Q ss_pred             HHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-chHHHHHhCCCHHHHHHHHccCCHHHHH
Q 003008          171 RSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRLKIANTDILPLLIKSLEDENMKVKE  248 (858)
Q Consensus       171 ~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  248 (858)
                      +|++.++ .+|..+++.|++|+|+.+|++.+ ++.+++.|+++|.|++.+. .....+.+.|+++.|+.+|+++++.++.
T Consensus       107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~  185 (296)
T 1xqr_A          107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV  185 (296)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence            9999865 58999999999999999999632 7899999999999999654 5577888999999999999999999999


Q ss_pred             HHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008          249 AAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD  304 (858)
Q Consensus       249 ~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~  304 (858)
                      .++|+|.+|+.. ++.+..+++.|+++.|+.+|++++.   .+++.++.+|+|++..
T Consensus       186 ~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~---~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS---PFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS---THHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh---hHHHHHHHHHHHHHhC
Confidence            999999999875 5677789999999999999987643   3899999999999986

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.74  E-value=7e-16  Score=189.60  Aligned_cols=613  Identities=12%  Similarity=0.071  Sum_probs=348.8

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD  181 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~  181 (858)
                      ..-..++..|. ++++.+|..++.++..++......   .  -.+.++.|+..+.+++..+++.++.+|..++...... 
T Consensus        90 ~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~---~--wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~-  162 (852)
T 4fdd_A           90 FIKSECLNNIG-DSSPLIRATVGILITTIASKGELQ---N--WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI-  162 (852)
T ss_dssp             HHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTT---T--CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH-
T ss_pred             HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCcc---c--cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH-
Confidence            33455777786 788899999999999998754221   1  2578999999999999999999999999997643211 


Q ss_pred             HHH-------hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHH
Q 003008          182 LVA-------ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVL  254 (858)
Q Consensus       182 ~i~-------~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L  254 (858)
                       +.       -.+.++.++++++++  ++.++..|+++|.++.........-.-...++.|+.++.+++++++..++++|
T Consensus       163 -~~~~~~~~~~~~il~~l~~~l~~~--~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L  239 (852)
T 4fdd_A          163 -LDSDVLDRPLNIMIPKFLQFFKHS--SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL  239 (852)
T ss_dssp             -HHHCSSSSCHHHHHHHHTTTTTCS--SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred             -hchhhhcchHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence             11       123578888888887  99999999999998875433211111235678888989999999999999999


Q ss_pred             HHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCccc---ccccccccccC
Q 003008          255 ANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPV---PMVGADAYKSF  330 (858)
Q Consensus       255 ~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~---~Lv~ll~~~~~  330 (858)
                      .+++....... ... .+.++.++..+++.   .+.++..|+..+..++..+..+..+  ...+..   .++..+.|.+.
T Consensus       240 ~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~---~~~vr~~a~e~l~~l~~~~~~~~~~--~~~~~~l~p~ll~~l~~~e~  313 (852)
T 4fdd_A          240 VMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ---DENVALEACEFWLTLAEQPICKDVL--VRHLPKLIPVLVNGMKYSDI  313 (852)
T ss_dssp             HHHHHHCHHHHGGGH-HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHTTSTTHHHHH--TTTHHHHHHHHHHHTSCCHH
T ss_pred             HHHHHhCHHHHHHHH-HHHHHHHHHHccCC---cHHHHHHHHHHHHHHhcchhHHHHH--HHHHHHHHHHHHHHcCCcHh
Confidence            99986432111 111 14567777777653   4558999999999999765433322  112221   12222111000


Q ss_pred             CccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCC------CCccchHHHHhhhhhhhhhhHHHHhhcccccCCCC
Q 003008          331 RPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSD------KNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRK  404 (858)
Q Consensus       331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~------~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~  404 (858)
                      +.            .+.+..              ..-++      .+..+..++...+..      ++...         
T Consensus       314 d~------------~~~~~d--------------~~ed~~~dd~~~~~~vr~~a~~~L~~------la~~~---------  352 (852)
T 4fdd_A          314 DI------------ILLKGD--------------VEGGSGGDDTISDWNLRKCSAAALDV------LANVY---------  352 (852)
T ss_dssp             HH------------HHHHC--------------------------CCCCHHHHHHHHHHH------HHHHH---------
T ss_pred             HH------------HHhcCC--------------cccccccccccccchHHHHHHHHHHH------HHHhc---------
Confidence            00            000000              00000      011122222222111      22111         


Q ss_pred             CCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHH
Q 003008          405 PQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATT  484 (858)
Q Consensus       405 ~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~  484 (858)
                                 ........++.+..+++++++.++..|+++|+.++........-.-.+.++.|+.+++++++.||..++
T Consensus       353 -----------~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~  421 (852)
T 4fdd_A          353 -----------RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITC  421 (852)
T ss_dssp             -----------GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             -----------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence                       000111256777888899999999999999999764332221122356799999999999999999999


Q ss_pred             HHHHHhhcC-hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCC
Q 003008          485 HALERLSVS-RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLD  563 (858)
Q Consensus       485 ~aL~~Ls~~-~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d  563 (858)
                      ++|++++.. ......-.-.+.++.|+..+.++  +..+++.++++|.+++...   .....-.-...++.|+..+...+
T Consensus       422 ~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~---~~~l~~~l~~ll~~L~~~l~~~~  496 (852)
T 4fdd_A          422 WTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEA---CTELVPYLAYILDTLVFAFSKYQ  496 (852)
T ss_dssp             HHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHH---GGGGGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHh---hHhhHhHHHHHHHHHHHHHHHhC
Confidence            999999862 11000011124677888888744  4899999999999998621   11110111345666777777665


Q ss_pred             hhHHHHHH-HHHHhhccc---cchhhhHhhccchhHHHH---hhcCCCHHHHHHHHHHHHHhhcCCcc-hHHHHhhchHH
Q 003008          564 PSIELTGN-VIEAAVSET---TTSYGKVLDSVFIGRMIG---IMKTSYPDLQRKAASILEFITIIDPS-MDTIISADIES  635 (858)
Q Consensus       564 ~~v~~~a~-~l~~L~~~~---~~~~~~i~~~g~i~~L~~---lL~s~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~  635 (858)
                      ......+. ++..++...   ... ....+ ..+|.+++   .+.+.++.++ .++.++..++..-.. ...+    ...
T Consensus       497 ~~~~~~~~~ai~~l~~~~~~~~~~-~~~~~-~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~----~~~  569 (852)
T 4fdd_A          497 HKNLLILYDAIGTLADSVGHHLNK-PEYIQ-MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPY----CEP  569 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGCC-HHHHH-HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHH----HHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhcc-HHHHH-HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHH----HHH
Confidence            55444444 565554211   111 11221 34555553   3345555553 566666665532111 0111    000


Q ss_pred             HHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhh------cccchHHHHHHHHHHhhccC
Q 003008          636 GLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFC------QTINSTHFIKLLRKILKSNV  709 (858)
Q Consensus       636 gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~------~~~~~~~~~~~l~~~l~~~~  709 (858)
                      -+..++  .++.+                             .+..-.......      +......++..+.       
T Consensus       570 i~~~~~--~~l~~-----------------------------~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~-------  611 (852)
T 4fdd_A          570 VYQRCV--NLVQK-----------------------------TLAQAMLNNAQPDQYEAPDKDFMIVALDLLS-------  611 (852)
T ss_dssp             HHHHHH--HHHHH-----------------------------HHHHHHHHHHCTTTSCCCCTHHHHHHHHHHH-------
T ss_pred             HHHHHH--HHHHH-----------------------------HHHHHHHhhcCCcccCCCcchHHHHHHHHHH-------
Confidence            011111  00000                             000000000000      0000000001111       


Q ss_pred             CCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhH-HHHhc
Q 003008          710 PLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTR-AVASE  788 (858)
Q Consensus       710 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~-~l~~~  788 (858)
                                .++.-++         ..+...+...+.++.++..+.+.++.+|..|..++..++..... ... ++.. 
T Consensus       612 ----------~l~~~l~---------~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~l~~-  670 (852)
T 4fdd_A          612 ----------GLAEGLG---------GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ-HVKPCIAD-  670 (852)
T ss_dssp             ----------HHHHHHG---------GGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG-GTGGGHHH-
T ss_pred             ----------HHHHHHh---------HhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhH-HHHHHHHH-
Confidence                      1111000         11111111245688888899999999999999999999865443 222 2222 


Q ss_pred             CCchHHHHHhhcCChHHHHHHHHHHHhhhcCc--cchHHHHHcCchHHHHHhhhcCCh--hH-HHHHHHHhcC
Q 003008          789 GGIFPLVKLIEEGSNRAVEAGLAILYNLSMDS--ENHSAIIAAGAVPALRRIVLSQRP--QW-TRALRLLRNL  856 (858)
Q Consensus       789 g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~--~~~~~i~~~g~v~~L~~ll~~~~~--~~-~~al~~l~~l  856 (858)
                       .+|.+++.|+.++..++..|++++..++..-  .....+  ..+++.|++++.+++.  .+ +.|..++..+
T Consensus       671 -~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~--~~il~~L~~~l~~~~~~~~~~~~a~~~igrl  740 (852)
T 4fdd_A          671 -FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRL  740 (852)
T ss_dssp             -HHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGT--HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHH--HHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence             5678888888888899999999999987542  222222  3568888898887643  23 6666666543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.74  E-value=2.4e-17  Score=173.87  Aligned_cols=197  Identities=12%  Similarity=0.150  Sum_probs=169.1

Q ss_pred             cHHHHHHHhCCCC------------HHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHH-hhcCCcHHHHHHHHHHHHH
Q 003008          423 GVARLVLILGLED------------ERAIARAAESIADISINEHMRMLFKEAGAIKYLVK-LLDHSSDAVRLATTHALER  489 (858)
Q Consensus       423 ~i~~Lv~lL~~~~------------~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~-LL~~~~~~v~~~a~~aL~~  489 (858)
                      -++..+..|.+++            .+-+..|+..|.++..+.++...+.+.|++++|+. +|.++++.+|..|+++|++
T Consensus        29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~  108 (296)
T 1xqr_A           29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT  108 (296)
T ss_dssp             HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            3455666666542            24677889999998888889999999999999999 9999999999999999999


Q ss_pred             hhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHH
Q 003008          490 LSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIEL  568 (858)
Q Consensus       490 Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~  568 (858)
                      ++. ++.++..+.+.|++++|+.+|.. +.+..+++.|+++|++++...  ......+...||++.|+.++.++++.++.
T Consensus       109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~-~~~~~v~~~A~~ALsnl~~~~--~~~~~~~~~~ggi~~L~~lL~~~d~~v~~  185 (296)
T 1xqr_A          109 CSQNVAAIQEQVLGLGALRKLLRLLDR-DACDTVRVKALFAISCLVREQ--EAGLLQFLRLDGFSVLMRAMQQQVQKLKV  185 (296)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcCC--cHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence            998 68899999999999999999984 234889999999999999732  22333566789999999999999999999


Q ss_pred             HHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008          569 TGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID  622 (858)
Q Consensus       569 ~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~  622 (858)
                      .++ +|.+++......+..+.+.|++++|+.+|.+.++.+++.|+.+|.+++...
T Consensus       186 ~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~  240 (296)
T 1xqr_A          186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  240 (296)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence            999 999998654433388999999999999999999999999999999999873

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.72  E-value=5.2e-15  Score=173.73  Aligned_cols=533  Identities=12%  Similarity=0.060  Sum_probs=336.3

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHH
Q 003008          103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDL  182 (858)
Q Consensus       103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~  182 (858)
                      .++.|...+  ++++.+|..++..|+.+...-...  ..  ....++.|..++.++++.+|..|+.+|.+++......  
T Consensus        50 l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~--~~--~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--  121 (588)
T 1b3u_A           50 LLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGP--EY--VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--  121 (588)
T ss_dssp             HHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSG--GG--GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcH--HH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--
Confidence            455555544  467789999999999877532211  11  2457788888888889999999999999998754221  


Q ss_pred             HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcC
Q 003008          183 VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS  262 (858)
Q Consensus       183 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~  262 (858)
                      ......+|.+.++..+.  +...+..++.+|..++..-...   .....++.+..++.++++.++..++.+|..++..-.
T Consensus       122 ~~~~~l~~~l~~l~~~~--~~~~R~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~  196 (588)
T 1b3u_A          122 DLEAHFVPLVKRLAGGD--WFTSRTSACGLFSVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE  196 (588)
T ss_dssp             HHHHTHHHHHHHHHTCS--SHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Confidence            12223467777777776  8899999999999887543221   123357788888899999999999999999986533


Q ss_pred             chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCC
Q 003008          263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLP  341 (858)
Q Consensus       263 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~  341 (858)
                      ..  ......+|.+..+++..   ...++..|+.+|..++.. +..   ......++ .+.+++                
T Consensus       197 ~~--~~~~~l~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~-~l~~~~----------------  251 (588)
T 1b3u_A          197 LD--NVKSEIIPMFSNLASDE---QDSVRLLAVEACVNIAQLLPQE---DLEALVMP-TLRQAA----------------  251 (588)
T ss_dssp             HH--HHHHTHHHHHHHHHTCS---CHHHHTTHHHHHHHHHHHSCHH---HHHHHTHH-HHHHHH----------------
T ss_pred             HH--hHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHhCCHH---HHHHHHHH-HHHHHc----------------
Confidence            22  22345678888888654   456889999999998863 211   11122333 133321                


Q ss_pred             CcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccc
Q 003008          342 DGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWI  421 (858)
Q Consensus       342 ~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  421 (858)
                            ...+...++.++.+|..+...                         .+.               +     ....
T Consensus       252 ------~d~~~~vR~~a~~~l~~l~~~-------------------------~~~---------------~-----~~~~  280 (588)
T 1b3u_A          252 ------EDKSWRVRYMVADKFTELQKA-------------------------VGP---------------E-----ITKT  280 (588)
T ss_dssp             ------TCSSHHHHHHHHHTHHHHHHH-------------------------HCH---------------H-----HHHH
T ss_pred             ------cCCCHHHHHHHHHHHHHHHHH-------------------------hCc---------------c-----cchh
Confidence                  111112333455544444210                         000               0     0011


Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHHhcC--ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHH
Q 003008          422 DGVARLVLILGLEDERAIARAAESIADISI--NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQI  499 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~  499 (858)
                      ..++.++.++++++++++..|+.+|..++.  .++.+....-...++.+..+++++++.+|..++++|+.++..-..  .
T Consensus       281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~  358 (588)
T 1b3u_A          281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D  358 (588)
T ss_dssp             THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h
Confidence            257888899999999999999999999542  223222233467789999999999999999999999998752110  1


Q ss_pred             HHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhc
Q 003008          500 MEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVS  578 (858)
Q Consensus       500 l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~  578 (858)
                      ......+|.+..++++.  +..++..+..+|..+..   .....  ......++.+..++.+++..++..++ ++..++.
T Consensus       359 ~~~~~l~p~l~~~l~d~--~~~Vr~~a~~~l~~l~~---~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~  431 (588)
T 1b3u_A          359 NTIEHLLPLFLAQLKDE--CPEVRLNIISNLDCVNE---VIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             HHHHHTHHHHHHHHTCS--CHHHHHHHHTTCHHHHH---HSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHH---hcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            11234778888899844  48899999888877764   11100  01123477788888888888988888 8877764


Q ss_pred             cccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCC
Q 003008          579 ETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQP  658 (858)
Q Consensus       579 ~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~  658 (858)
                      .....   ......+|.+..++.+.+..++..|+.++..+...-.....+     ...+..+.  ..+.+.++       
T Consensus       432 ~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-----~~llp~l~--~~~~~~~~-------  494 (588)
T 1b3u_A          432 QLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH-----ATIIPKVL--AMSGDPNY-------  494 (588)
T ss_dssp             HHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH-----HHTHHHHH--HTTTCSCH-------
T ss_pred             HcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH-----HHHHHHHH--HHhhCCCH-------
Confidence            32211   122345788999999999999999999999886532111000     00111111  11111110       


Q ss_pred             CccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccc
Q 003008          659 EKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPI  738 (858)
Q Consensus       659 ~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  738 (858)
                                                    .....+..++..+...                                 +
T Consensus       495 ------------------------------~~R~~a~~~l~~l~~~---------------------------------~  511 (588)
T 1b3u_A          495 ------------------------------LHRMTTLFCINVLSEV---------------------------------C  511 (588)
T ss_dssp             ------------------------------HHHHHHHHHHHHHHHH---------------------------------H
T ss_pred             ------------------------------HHHHHHHHHHHHHHHh---------------------------------c
Confidence                                          0000001111111000                                 0


Q ss_pred             hhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhh
Q 003008          739 NMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLS  817 (858)
Q Consensus       739 ~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~  817 (858)
                      +........+|.|++++++++++||..++.+|..+...-..    .......+|.|.+++++.+.+||..|..+|..+.
T Consensus       512 ~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          512 GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN----STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH----HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch----hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            00011234688999999999999999999999998753222    1222344567777888999999999999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.68  E-value=2.1e-14  Score=176.36  Aligned_cols=596  Identities=12%  Similarity=0.045  Sum_probs=346.8

Q ss_pred             CCcHHHHHHHhc--CCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch
Q 003008          101 DSYVALFVQMLG--LDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV  178 (858)
Q Consensus       101 ~g~i~~lv~lL~--~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~  178 (858)
                      .+....+..++.  .+.++.+|..|+..|.|...........-. +...-+.+++.+.++++.+|..++.++..++..+.
T Consensus        44 p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~-~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~  122 (852)
T 4fdd_A           44 PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV-TDFIKSECLNNIGDSSPLIRATVGILITTIASKGE  122 (852)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH-HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC
Confidence            455566777664  366889999999999887654322111111 23445667777888899999999999999976431


Q ss_pred             hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHH-H----hCCCHHHHHHHHccCCHHHHHHHHHH
Q 003008          179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKI-A----NTDILPLLIKSLEDENMKVKEAAGGV  253 (858)
Q Consensus       179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i-~----~~g~i~~Lv~ll~~~~~~~~~~a~~~  253 (858)
                      ..   ...+.++.|++.+.++  ++.+++.++.+|..++.+-.....- .    -...++.++++++++++.++..|+++
T Consensus       123 ~~---~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~a  197 (852)
T 4fdd_A          123 LQ---NWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVAC  197 (852)
T ss_dssp             TT---TCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHH
T ss_pred             cc---ccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            10   1245789999999988  9999999999999998543221100 0    12356777788888899999999999


Q ss_pred             HHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCc
Q 003008          254 LANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRP  332 (858)
Q Consensus       254 L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~  332 (858)
                      |.++.........-.-...++.|..++.++   .+.++..++.+|.+++.. ++             .+...        
T Consensus       198 L~~~~~~~~~~~~~~~~~~l~~l~~~~~d~---~~~vr~~a~~~L~~l~~~~~~-------------~~~~~--------  253 (852)
T 4fdd_A          198 VNQFIISRTQALMLHIDSFIENLFALAGDE---EPEVRKNVCRALVMLLEVRMD-------------RLLPH--------  253 (852)
T ss_dssp             HHTTTTTTCHHHHTSHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHHHCHH-------------HHGGG--------
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHhCHH-------------HHHHH--------
Confidence            988775432211101123566676666543   445777888887777642 11             00000        


Q ss_pred             cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcc
Q 003008          333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPID  412 (858)
Q Consensus       333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~  412 (858)
                                                                    +                                 
T Consensus       254 ----------------------------------------------l---------------------------------  254 (852)
T 4fdd_A          254 ----------------------------------------------M---------------------------------  254 (852)
T ss_dssp             ----------------------------------------------H---------------------------------
T ss_pred             ----------------------------------------------H---------------------------------
Confidence                                                          0                                 


Q ss_pred             cccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHH--HcCcHHHHHHhh-----------cC-----
Q 003008          413 RQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFK--EAGAIKYLVKLL-----------DH-----  474 (858)
Q Consensus       413 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~--~~g~i~~Lv~LL-----------~~-----  474 (858)
                              .+.++.++..+++.++.++..|++.+..++.....+..+.  -...++.|+..+           .+     
T Consensus       255 --------~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~  326 (852)
T 4fdd_A          255 --------HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS  326 (852)
T ss_dssp             --------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred             --------HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence                    0133445556677788888889988888775443333221  124456666665           22     


Q ss_pred             ------CcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccccccc
Q 003008          475 ------SSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP  548 (858)
Q Consensus       475 ------~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~  548 (858)
                            .+..+|..++.+|..++....  ..+.. ..++.+..++.++  +..+|+.+..+|++++....+. ..  -.-
T Consensus       327 ~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~--~~~~R~aa~~alg~i~~~~~~~-~~--~~l  398 (852)
T 4fdd_A          327 GGDDTISDWNLRKCSAAALDVLANVYR--DELLP-HILPLLKELLFHH--EWVVKESGILVLGAIAEGCMQG-MI--PYL  398 (852)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCS--SHHHHHHHHHHHHHTTTTTHHH-HG--GGH
T ss_pred             ccccccccchHHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcchHH-HH--HHH
Confidence                  122468899999999986221  11111 2466677777744  4889999999999999743221 11  112


Q ss_pred             CcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH
Q 003008          549 VNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDT  627 (858)
Q Consensus       549 ~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~  627 (858)
                      .+.++.++.++.++++.++..++ ++.+++...........-.+.++.|+..+.+.++.++..|+++|.++.......  
T Consensus       399 ~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~--  476 (852)
T 4fdd_A          399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE--  476 (852)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG--
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh--
Confidence            35688899999999999999999 998887532211011122467888999999999999999999999998543221  


Q ss_pred             HHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHh--
Q 003008          628 IISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKIL--  705 (858)
Q Consensus       628 ~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l--  705 (858)
                      + .-....-+..++  ..+.....                ...  ......+..+....... ..........+..++  
T Consensus       477 l-~~~l~~ll~~L~--~~l~~~~~----------------~~~--~~~~~ai~~l~~~~~~~-~~~~~~~~~l~p~l~~~  534 (852)
T 4fdd_A          477 L-VPYLAYILDTLV--FAFSKYQH----------------KNL--LILYDAIGTLADSVGHH-LNKPEYIQMLMPPLIQK  534 (852)
T ss_dssp             G-GGGHHHHHHHHH--HHHHHCCH----------------HHH--HHHHHHHHHHHHHHGGG-GCCHHHHHHHHHHHHHH
T ss_pred             h-HhHHHHHHHHHH--HHHHHhCh----------------HHH--HHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHH
Confidence            1 112223344444  33322211                000  00001111111110000 000000000000000  


Q ss_pred             -hc-cCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhc-----------------cCCHHHHHHH
Q 003008          706 -KS-NVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIK-----------------SFSSEAREAA  766 (858)
Q Consensus       706 -~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-----------------~~~~~v~~~A  766 (858)
                       .. ..+...-..+..|+..+...-+      ..+...  ....++.++++++                 .++.+++..+
T Consensus       535 ~~~l~d~~~~~~~~~~~l~~i~~~~g------~~~~~~--~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~  606 (852)
T 4fdd_A          535 WNMLKDEDKDLFPLLECLSSVATALQ------SGFLPY--CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA  606 (852)
T ss_dssp             HHHSCTTCTTHHHHHHHHHHHHHHHG------GGGHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHh------HhHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence             00 0000000112233322221000      000000  1112333444432                 2356789999


Q ss_pred             HHHHHHhhhcCcchhhH-HHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC--ccchHHHHHcCchHHHHHhhhcCC
Q 003008          767 VIELNRIISEGVVDSTR-AVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD--SENHSAIIAAGAVPALRRIVLSQR  843 (858)
Q Consensus       767 ~~aL~nL~~~~~~~~~~-~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~v~~L~~ll~~~~  843 (858)
                      +.++..++..-.. ... .+.+.+.++.++++++++++.+|..+..++..++..  +.....+-.  ++|.+.+.+...+
T Consensus       607 l~~l~~l~~~l~~-~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~--~lp~l~~~l~~~~  683 (852)
T 4fdd_A          607 LDLLSGLAEGLGG-NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD--FMPILGTNLNPEF  683 (852)
T ss_dssp             HHHHHHHHHHHGG-GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHH--HHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHHhH-hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHcCccc
Confidence            9999888764433 444 444678888889999999999999999999999753  222222222  6788888887777


Q ss_pred             hhH-HHHHHHHhcC
Q 003008          844 PQW-TRALRLLRNL  856 (858)
Q Consensus       844 ~~~-~~al~~l~~l  856 (858)
                      +.+ ..|.+++..+
T Consensus       684 ~~v~~~a~~alg~i  697 (852)
T 4fdd_A          684 ISVCNNATWAIGEI  697 (852)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            777 7777766543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.60  E-value=1.9e-11  Score=137.63  Aligned_cols=460  Identities=12%  Similarity=0.040  Sum_probs=300.5

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCch
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSINV  178 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~~  178 (858)
                      ...|+.|++.++++.-.+.|..|+..|..++..-.    ..+ -.++++.|+..|+.+  |.++...++.+|.++-..++
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~----~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT----THH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH----HHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            56789999988766777889999999999986432    334 378999999999876  77888889999988855322


Q ss_pred             ------------------hHHHH-HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-c-hHHHHH-hCCCHHHHH
Q 003008          179 ------------------YRDLV-AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-K-HRLKIA-NTDILPLLI  236 (858)
Q Consensus       179 ------------------~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~-~~~~i~-~~g~i~~Lv  236 (858)
                                        +.+.+ .+.+.|+.|+.+|++.  +-.++.+++.+|..|+.+. + .+..|. .-++++.|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~--df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF--DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc--cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence                              12233 3478899999999988  9999999999999999654 3 577777 459999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHHcCCcCc-hHHHHhCCCHHHHHHHHccCCC-CCHHHHHHHHHHHHHHhc-ChhhHHHHHH
Q 003008          237 KSLEDENMKVKEAAGGVLANLALSKSN-HNILVEAGVIPKLAMLLKANVE-GSKVIRKEARNALIELAK-DDYYRILIIE  313 (858)
Q Consensus       237 ~ll~~~~~~~~~~a~~~L~nL~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~-~~~~~~~~a~~aL~nl~~-~~~~~~~i~~  313 (858)
                      .+|.+..+.+|..++..|.+|+.++.. +..+.-.|+++.|+.+++.+.. +.-.+.+.|+.+|.||.. |+.|+..+++
T Consensus       173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE  252 (651)
T 3grl_A          173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE  252 (651)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999988654 4455667999999999976421 123467889999999999 6789999999


Q ss_pred             cCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHH
Q 003008          314 EGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVR  393 (858)
Q Consensus       314 ~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~  393 (858)
                      .|+++ .|..++..+.+.        ..+...  +.   .-...+...++-|.... +.      ..  ..+.+|     
T Consensus       253 t~~i~-~L~~LL~~~~~~--------~~W~~Q--k~---~N~~~~L~iIrlLv~~~-~~------~~--~t~~nQ-----  304 (651)
T 3grl_A          253 GSYIQ-RMKPWFEVGDEN--------SGWSAQ--KV---TNLHLMLQLVRVLVSPN-NP------PG--ATSSCQ-----  304 (651)
T ss_dssp             TTCGG-GGGGGGCCCSCS--------SCCCHH--HH---HHHHHHHHHHHHHTCTT-SC------HH--HHHHHH-----
T ss_pred             cCCHH-HHHHHhCCCccc--------cccHHH--HH---HHHHHHHHHHHHHhCCC-CC------CC--CCHHHH-----
Confidence            99999 499885321110        000000  00   00111222222222111 00      00  000111     


Q ss_pred             hhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCC--CHHHHHHHHHHHHH-hcCChhhHHHHHHcC-------
Q 003008          394 IGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLE--DERAIARAAESIAD-ISINEHMRMLFKEAG-------  463 (858)
Q Consensus       394 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g-------  463 (858)
                                            ..+...|++..|+.++.++  ...++..|..+++. +.+++.++..+.+..       
T Consensus       305 ----------------------~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~  362 (651)
T 3grl_A          305 ----------------------KAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPR  362 (651)
T ss_dssp             ----------------------HHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCE
T ss_pred             ----------------------HHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCc
Confidence                                  2233345888999998776  68899999999999 567888899888654       


Q ss_pred             --cHHHHHHhhcCC-cHHHHHHHHHHHHHhhc-ChhHHHHHHHc------C----ChH---HHHHhhcCCCccHHHHHHH
Q 003008          464 --AIKYLVKLLDHS-SDAVRLATTHALERLSV-SRGVCQIMEAE------G----VVH---PLVNTLKNLDISESLMEKT  526 (858)
Q Consensus       464 --~i~~Lv~LL~~~-~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~------g----~i~---~Li~lL~~~~~~~~~~~~a  526 (858)
                        .+..|+.++.+. ..++|.+++.++..... +++.+..+...      +    .+.   .|..-+...  ++---..|
T Consensus       363 p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~--d~~~~wfA  440 (651)
T 3grl_A          363 PAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFST--DSLSNWCA  440 (651)
T ss_dssp             EHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSS--CHHHHHHH
T ss_pred             ChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccC--chHHHHHH
Confidence              333344446554 48999999999999987 66666666543      1    111   123333322  24334457


Q ss_pred             HHHHHHhcCCCcccc---cccccccC------cCcHHHHHhhcC-CChhHHHHHH-HHHH-hhccccchhhhHhhcc-ch
Q 003008          527 LDILGRILDPSKEMK---SKFYDIPV------NGSEKGLDAAES-LDPSIELTGN-VIEA-AVSETTTSYGKVLDSV-FI  593 (858)
Q Consensus       527 ~~~L~~l~~~~~~~~---~~~~i~~~------~~i~~Li~ll~s-~d~~v~~~a~-~l~~-L~~~~~~~~~~i~~~g-~i  593 (858)
                      +.+|..+...+.+..   .+......      .-++.+..+|.. .++.+...=+ .|+. |..+...- ..+...| .+
T Consensus       441 avil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV-~dFL~~~s~l  519 (651)
T 3grl_A          441 AVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAV-THFLHNSANV  519 (651)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHH-HHHHHSTTHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHH-HHHHcCCchH
Confidence            778888776432111   11111111      123344555543 4454433333 3433 33444444 5555554 58


Q ss_pred             hHHHHhhcC--C--CHHHHHHHHHHHHHhhc
Q 003008          594 GRMIGIMKT--S--YPDLQRKAASILEFITI  620 (858)
Q Consensus       594 ~~L~~lL~s--~--~~~v~~~a~~~L~~l~~  620 (858)
                      +.|++.+.+  +  ++.||-.|+-.|+.+..
T Consensus       520 ~~L~~~i~~~~~~~~~lvqGL~a~LLGi~ye  550 (651)
T 3grl_A          520 PFLTGQIAENLGEEEQLVQGLCALLLGISIY  550 (651)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Confidence            999988753  2  24477777777776654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.55  E-value=1.1e-12  Score=153.67  Aligned_cols=399  Identities=13%  Similarity=0.109  Sum_probs=261.0

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHH-cccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-h
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWK-YSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN-V  178 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~-la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~  178 (858)
                      .|-+..+-+.|+ +++...+..+++-+.. +..+.+.        ..+.+.+++++.+.+.+.|..+.-++.+++... +
T Consensus        12 ~~e~~~i~~~L~-~~~~~~k~~~~~kli~~~~~G~d~--------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e   82 (591)
T 2vgl_B           12 KGEIFELKAELN-NEKKEKRKEAVKKVIAAMTVGKDV--------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPD   82 (591)
T ss_dssp             SSHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHTTCCC--------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH
T ss_pred             CChHHHHHHHHc-CCCHHHHHHHHHHHHHHHHCCCCh--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCch
Confidence            577888999998 7777777766555543 3333321        334567888999999999998888888887632 2


Q ss_pred             hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008          179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA  258 (858)
Q Consensus       179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~  258 (858)
                      ..     .-++..+.+-|+++  ++.++..|+.+|+++. .++....     .++.+.+++.+.++.+|..|+.++.++.
T Consensus        83 ~~-----~l~~n~l~kdL~~~--n~~ir~~AL~~L~~i~-~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~  149 (591)
T 2vgl_B           83 MA-----IMAVNSFVKDCEDP--NPLIRALAVRTMGCIR-VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLH  149 (591)
T ss_dssp             HH-----HTTHHHHGGGSSSS--SHHHHHHHHHHHHTCC-SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHcCCC--CHHHHHHHHHHHHcCC-hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            21     12467888888887  9999999999999986 3332222     3578999999999999999999999998


Q ss_pred             CCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCcccccccccccccCCccCCCC
Q 003008          259 LSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD-YYRILIIEEGLVPVPMVGADAYKSFRPELHSW  337 (858)
Q Consensus       259 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~  337 (858)
                      .....  .+.+.+.++.|.++|.+.   .+.++..|+.+|.+++.+. +........+.+. .|+..+            
T Consensus       150 ~~~p~--~~~~~~~~~~l~~lL~d~---d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~-~Ll~~l------------  211 (591)
T 2vgl_B          150 DINAQ--MVEDQGFLDSLRDLIADS---NPMVVANAVAALSEISESHPNSNLLDLNPQNIN-KLLTAL------------  211 (591)
T ss_dssp             HSSCC--CHHHHHHHHHHHHTTSCS---CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH-HHHHHH------------
T ss_pred             hhChh--hcccccHHHHHHHHhCCC---ChhHHHHHHHHHHHHHhhCCCccchhccHHHHH-HHHHcC------------
Confidence            74322  233346788999999653   4669999999999999753 2100000000111 122211            


Q ss_pred             CCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccc
Q 003008          338 PSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL  417 (858)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~  417 (858)
                                ...+.+.+...+.+|..+...+.                                         ..    
T Consensus       212 ----------~~~~~~~q~~il~~l~~l~~~~~-----------------------------------------~~----  236 (591)
T 2vgl_B          212 ----------NECTEWGQIFILDCLSNYNPKDD-----------------------------------------RE----  236 (591)
T ss_dssp             ----------HHCCHHHHHHHHHHHHTSCCCSH-----------------------------------------HH----
T ss_pred             ----------CCCCchHHHHHHHHHHHhCCCCh-----------------------------------------HH----
Confidence                      01111222223333333321110                                         00    


Q ss_pred             ccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC----ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-
Q 003008          418 LPWIDGVARLVLILGLEDERAIARAAESIADISI----NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-  492 (858)
Q Consensus       418 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~----~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-  492 (858)
                        ....++.+..++++.++.++..|++++..+..    +++..+.+. ..+.+.|+.+++ +++.+|..++.+|..+.. 
T Consensus       237 --~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~  312 (591)
T 2vgl_B          237 --AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK  312 (591)
T ss_dssp             --HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence              01255666777888999999999999999653    334333332 455688888775 789999999999999986 


Q ss_pred             ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-
Q 003008          493 SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-  571 (858)
Q Consensus       493 ~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-  571 (858)
                      +++.-.     ..+..+   +...+++..++..+..+|.+++..   .. .     ...++.|..++.+.|.+++..++ 
T Consensus       313 ~p~~~~-----~~~~~~---~~~~~d~~~Ir~~al~~L~~l~~~---~n-v-----~~iv~~L~~~l~~~d~~~r~~~v~  375 (591)
T 2vgl_B          313 RPEILK-----QEIKVF---FVKYNDPIYVKLEKLDIMIRLASQ---AN-I-----AQVLAELKEYATEVDVDFVRKAVR  375 (591)
T ss_dssp             CCSTTT-----TCTTTT---SCCTTSCHHHHHHHHHHHHHTCCS---ST-H-----HHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             ChHHHH-----HHHHhh---eeccCChHHHHHHHHHHHHHHCCh---hh-H-----HHHHHHHHHHHhcCCHHHHHHHHH
Confidence            333111     011211   222244588999999999998862   11 1     12356677788888999999998 


Q ss_pred             HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008          572 VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI  620 (858)
Q Consensus       572 ~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~  620 (858)
                      +|..++......     ....++.|++++++.+..+...++.++..+..
T Consensus       376 aI~~la~~~~~~-----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~  419 (591)
T 2vgl_B          376 AIGRCAIKVEQS-----AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR  419 (591)
T ss_dssp             HHHHHHTTCHHH-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhChhH-----HHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence            998887654321     13467889999998888888877777777654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.48  E-value=2.7e-11  Score=141.83  Aligned_cols=404  Identities=14%  Similarity=0.071  Sum_probs=267.0

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD  181 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~  181 (858)
                      .+.+.++++++ +++..+|.-+..++.+++.....   . +  .-++..+.+-|.++++.+|..|+.+|+++.. ++...
T Consensus        49 ~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~e---~-~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~  120 (591)
T 2vgl_B           49 SLFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSQPD---M-A--IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITE  120 (591)
T ss_dssp             GGHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHSHH---H-H--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccCch---H-H--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHH
Confidence            34567888887 88988898888888877653322   1 1  2456777788889999999999999998863 33222


Q ss_pred             HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008          182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS  260 (858)
Q Consensus       182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~  260 (858)
                      .     .++.+.+++.+.  ++.+++.|+.+|.++... ++.   +.+.+.++.|.++|.++++.++..|+.+|..++..
T Consensus       121 ~-----l~~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          121 Y-----LCEPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             H-----HHHHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred             H-----HHHHHHHHcCCC--ChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence            2     368899999988  999999999999999753 332   22357789999999999999999999999999876


Q ss_pred             cCch-HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCC
Q 003008          261 KSNH-NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWP  338 (858)
Q Consensus       261 ~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~  338 (858)
                      .... ..-...+.++.|+..+...   .+-.+...+++|..++.. +.....+     ++ ++..+              
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~---~~~~q~~il~~l~~l~~~~~~~~~~~-----l~-~l~~~--------------  247 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNEC---TEWGQIFILDCLSNYNPKDDREAQSI-----CE-RVTPR--------------  247 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHTSCCCSHHHHHHH-----HH-HHTTC--------------
T ss_pred             CCCccchhccHHHHHHHHHcCCCC---CchHHHHHHHHHHHhCCCChHHHHHH-----HH-HHHHH--------------
Confidence            4322 1001123456677766543   344666777888777753 2222222     23 24433              


Q ss_pred             CCCCcchhhcccCCchhhHHHHHHhccCCCC-CCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccc
Q 003008          339 SLPDGTEIERTSQGPSKFGANELLLGLNVSD-KNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL  417 (858)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~-~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~  417 (858)
                              +++.+..++++|++++..+.... .+.+    .++.+                                   
T Consensus       248 --------l~~~~~~V~~ea~~~i~~l~~~~~~~~~----~~~~~-----------------------------------  280 (591)
T 2vgl_B          248 --------LSHANSAVVLSAVKVLMKFLELLPKDSD----YYNML-----------------------------------  280 (591)
T ss_dssp             --------SCSSTTHHHHHHHHHHHHSCCSCCBTTB----SHHHH-----------------------------------
T ss_pred             --------HcCCChHHHHHHHHHHHHHhhccCCCHH----HHHHH-----------------------------------
Confidence                    12223366777888888875211 0000    00000                                   


Q ss_pred             ccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhH
Q 003008          418 LPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGV  496 (858)
Q Consensus       418 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~  496 (858)
                        .....+.|+.++ +++++++..++.+|..+. ..++.-    . ..+..+..+. +++..+|..++..|.+++.... 
T Consensus       281 --~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~----~-~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~~n-  350 (591)
T 2vgl_B          281 --LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEIL----K-QEIKVFFVKY-NDPIYVKLEKLDIMIRLASQAN-  350 (591)
T ss_dssp             --HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTT----T-TCTTTTSCCT-TSCHHHHHHHHHHHHHTCCSST-
T ss_pred             --HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHH----H-HHHHhheecc-CChHHHHHHHHHHHHHHCChhh-
Confidence              012445677665 488999999999999954 333211    0 1122222222 4448999999999999986433 


Q ss_pred             HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008          497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEA  575 (858)
Q Consensus       497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~  575 (858)
                      ...     .++.|...+.+.  +.+++..++.++.+++.   .+...    ....++.+++++...+..+...+. ++..
T Consensus       351 v~~-----iv~~L~~~l~~~--d~~~r~~~v~aI~~la~---~~~~~----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~  416 (591)
T 2vgl_B          351 IAQ-----VLAELKEYATEV--DVDFVRKAVRAIGRCAI---KVEQS----AERCVSTLLDLIQTKVNYVVQEAIVVIRD  416 (591)
T ss_dssp             HHH-----HHHHHHHHTTSS--CHHHHHHHHHHHHHHHT---TCHHH----HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHhcC--CHHHHHHHHHHHHHHHH---hChhH----HHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            222     355677777643  48899999999999997   22211    123478899999988888888888 8888


Q ss_pred             hhccccchhhhHhhccchhHHHHhhc-CCCHHHHHHHHHHHHHhhcCC
Q 003008          576 AVSETTTSYGKVLDSVFIGRMIGIMK-TSYPDLQRKAASILEFITIID  622 (858)
Q Consensus       576 L~~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~  622 (858)
                      ++......     ...+++.|++.+. ..++.++..++|+|+.....-
T Consensus       417 ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~  459 (591)
T 2vgl_B          417 IFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERI  459 (591)
T ss_dssp             HHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence            77543321     1456788888886 467888888899998875543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.48  E-value=4.8e-11  Score=146.71  Aligned_cols=638  Identities=11%  Similarity=0.061  Sum_probs=349.0

Q ss_pred             CcHHHHHHHhcCCC-CHHHHHHHHHHHHHcccCCccc---HHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhc
Q 003008          102 SYVALFVQMLGLDY-DPLDREQAVEALWKYSLGGKKC---IDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISS  175 (858)
Q Consensus       102 g~i~~lv~lL~~s~-d~~~~~~a~~~L~~la~~~~~~---~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~  175 (858)
                      ..++.|+..++ ++ ++.++..++.+|..++..-...   ....+  ...++.++..+.++  +.++|..++.+|.++..
T Consensus       134 ~ll~~L~~~l~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~  210 (861)
T 2bpt_A          134 ELMKIMVDNTG-AEQPENVKRASLLALGYMCESADPQSQALVSSS--NNILIAIVQGAQSTETSKAVRLAALNALADSLI  210 (861)
T ss_dssp             HHHHHHHHHTS-TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            46788888887 66 8899999999998887532211   01122  34677778888887  88999999999998743


Q ss_pred             C-chh-HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-c-hHHHHHhCCCHHHHHHHHccCCHHHHHHHH
Q 003008          176 I-NVY-RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-K-HRLKIANTDILPLLIKSLEDENMKVKEAAG  251 (858)
Q Consensus       176 ~-~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~  251 (858)
                      . .++ .........++.|.+.+.+.  ++.++..++.+|..+.... + ....+ ....++.+...+.+.++.++..++
T Consensus       211 ~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~  287 (861)
T 2bpt_A          211 FIKNNMEREGERNYLMQVVCEATQAE--DIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTV  287 (861)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHccChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHH
Confidence            1 111 00000112467777788777  9999999999999987432 2 12222 115566777778888999999999


Q ss_pred             HHHHHHcCCcCc---------------h---HHHHhCCCHHHHHHHHccCC----CCCHHHHHHHHHHHHHHhcChhhHH
Q 003008          252 GVLANLALSKSN---------------H---NILVEAGVIPKLAMLLKANV----EGSKVIRKEARNALIELAKDDYYRI  309 (858)
Q Consensus       252 ~~L~nL~~~~~~---------------~---~~i~~~g~i~~Lv~ll~~~~----~~~~~~~~~a~~aL~nl~~~~~~~~  309 (858)
                      ..+..++.....               .   .... ...++.++..|+...    ++...++..+..+|..++..-.   
T Consensus       288 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---  363 (861)
T 2bpt_A          288 EFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---  363 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---
T ss_pred             HHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---
Confidence            999988754210               0   0111 345778888776432    1123477888999988886311   


Q ss_pred             HHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhh
Q 003008          310 LIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQH  389 (858)
Q Consensus       310 ~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~  389 (858)
                          ...++ .++..+.                  ..+...+...+..++.+|..++....     ...+...+      
T Consensus       364 ----~~~~~-~l~~~l~------------------~~l~~~~~~~r~~a~~~l~~i~~~~~-----~~~~~~~l------  409 (861)
T 2bpt_A          364 ----NHILE-PVLEFVE------------------QNITADNWRNREAAVMAFGSIMDGPD-----KVQRTYYV------  409 (861)
T ss_dssp             ----GGGHH-HHHHHHH------------------HHTTCSSHHHHHHHHHHHHHTSSSSC-----HHHHHHHH------
T ss_pred             ----HhHHH-HHHHHHH------------------HHcCCCChhHHHHHHHHHHHHHcCCC-----HHHHHHHH------
Confidence                01122 1222210                  01111121334457777777753321     00110000      


Q ss_pred             HHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--hhhHHHHHHcCcHHH
Q 003008          390 FLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISIN--EHMRMLFKEAGAIKY  467 (858)
Q Consensus       390 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~g~i~~  467 (858)
                                                     ...++.++..++++++.++..++++|+.++..  ++....-.-...++.
T Consensus       410 -------------------------------~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~  458 (861)
T 2bpt_A          410 -------------------------------HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQA  458 (861)
T ss_dssp             -------------------------------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHH
T ss_pred             -------------------------------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence                                           12567788889999999999999999985531  100000011345788


Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHhhcC------hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc
Q 003008          468 LVKLLDHSSDAVRLATTHALERLSVS------RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK  541 (858)
Q Consensus       468 Lv~LL~~~~~~v~~~a~~aL~~Ls~~------~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~  541 (858)
                      |+..++++ +.++..++++|.+++..      ......+  ...++.|+.++...+.+..++..+..++..+.....+..
T Consensus       459 l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~  535 (861)
T 2bpt_A          459 CLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV  535 (861)
T ss_dssp             HHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhh
Confidence            88888776 89999999999998762      1122222  134677788887544446788889999888876221110


Q ss_pred             cccccccCcCcHHHHHhhcCC---------------ChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCH
Q 003008          542 SKFYDIPVNGSEKGLDAAESL---------------DPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYP  605 (858)
Q Consensus       542 ~~~~i~~~~~i~~Li~ll~s~---------------d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~  605 (858)
                       ..  .-...++.++..+...               ..+++..++ ++.+++........... ...++.++.++++.+.
T Consensus       536 -~~--~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~  611 (861)
T 2bpt_A          536 -AE--TSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDS  611 (861)
T ss_dssp             -HH--HHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTG
T ss_pred             -HH--HHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCCC
Confidence             00  0012345555555421               234555666 77776643322101111 2466778888888777


Q ss_pred             -HHHHHHHHHHHHhhcCCcc-hHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHh
Q 003008          606 -DLQRKAASILEFITIIDPS-MDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLL  683 (858)
Q Consensus       606 -~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll  683 (858)
                       .++..++.++..++..... -..+    ...-+..++  ..+.+.+.+         +         .......+..+.
T Consensus       612 ~~v~~~~~~~l~~l~~~~~~~~~~~----l~~i~~~l~--~~l~~~~~~---------v---------r~~a~~~l~~l~  667 (861)
T 2bpt_A          612 AFIEDDVFYAISALAASLGKGFEKY----LETFSPYLL--KALNQVDSP---------V---------SITAVGFIADIS  667 (861)
T ss_dssp             GGTHHHHHHHHHHHHHHHGGGGHHH----HHHHHHHHH--HHHHCTTSH---------H---------HHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHH--HHhccccHH---------H---------HHHHHHHHHHHH
Confidence             8899999999888754221 1111    122233333  334332220         0         111111222222


Q ss_pred             hhhhhhcccchHHHHHHHHHHhhcc-CCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCC---
Q 003008          684 DSKQFCQTINSTHFIKLLRKILKSN-VPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFS---  759 (858)
Q Consensus       684 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~---  759 (858)
                      ......-..........+.+.++.. .+...+.....++..+....+      ..+...  -...+|+++..+....   
T Consensus       668 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~------~~~~~~--l~~~l~~l~~~~~~~~~~~  739 (861)
T 2bpt_A          668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG------ADFIPY--LNDIMALCVAAQNTKPENG  739 (861)
T ss_dssp             HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG------GGGHHH--HHHHHHHHHHHHTCCCSSS
T ss_pred             HHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh------hhHHHH--HHHHHHHHHHHHhcCCCCC
Confidence            1111000000111111122222221 123344445555554432111      111110  1235677777776321   


Q ss_pred             --------HHHHHHHHHHHHHhhhcCcchhhHHHH--hcCCchHHHHHhhcC----ChHHHHHHHHHHHhhhc---Cccc
Q 003008          760 --------SEAREAAVIELNRIISEGVVDSTRAVA--SEGGIFPLVKLIEEG----SNRAVEAGLAILYNLSM---DSEN  822 (858)
Q Consensus       760 --------~~v~~~A~~aL~nL~~~~~~~~~~~l~--~~g~i~~Lv~lL~~~----~~~v~~~a~~aL~nL~~---~~~~  822 (858)
                              ..+|..++.++..+...-.. ....+.  -...++.|.+.+.+.    ++.+|..|+.+|..|+.   .+..
T Consensus       740 d~d~~~~~~~vr~~~l~~~~~i~~~l~~-~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~  818 (861)
T 2bpt_A          740 TLEALDYQIKVLEAVLDAYVGIVAGLHD-KPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI  818 (861)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchH
Confidence                    46888888888887643221 001111  012234444555553    78899999999999965   2322


Q ss_pred             hHHHHHcCchHHHHHhhhc---CChhH-HHHHHHHhc
Q 003008          823 HSAIIAAGAVPALRRIVLS---QRPQW-TRALRLLRN  855 (858)
Q Consensus       823 ~~~i~~~g~v~~L~~ll~~---~~~~~-~~al~~l~~  855 (858)
                       .......+++.|++.+.+   .+..+ +.|-|+++.
T Consensus       819 -~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~  854 (861)
T 2bpt_A          819 -KQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQ  854 (861)
T ss_dssp             -GGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred             -HHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence             222233567888888773   44445 666666543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.47  E-value=1.2e-10  Score=143.49  Aligned_cols=442  Identities=12%  Similarity=0.031  Sum_probs=258.0

Q ss_pred             CCcHHHHHHHhcCCC--CHHHHHHHHHHHHHcccCCcc-cHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhc
Q 003008          101 DSYVALFVQMLGLDY--DPLDREQAVEALWKYSLGGKK-CIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISS  175 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~--d~~~~~~a~~~L~~la~~~~~-~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~  175 (858)
                      ...++.++..+. ++  ++.+|..++.+|..++..-.. .....+  ...++.+...+.++  +..+|..|+.+|.++..
T Consensus       127 ~~ll~~l~~~l~-~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (876)
T 1qgr_A          127 PELIPQLVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (876)
T ss_dssp             TTHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            467889999997 77  889999999999988754211 111111  35677788888877  68899999999999865


Q ss_pred             C-chh-HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHH
Q 003008          176 I-NVY-RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGG  252 (858)
Q Consensus       176 ~-~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~  252 (858)
                      . ..+ .........++.+.+++.+.  ++.++..++.+|..+... ++.-........++.++..+.+.++.++..++.
T Consensus       204 ~~~~~~~~~~~~~~il~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~  281 (876)
T 1qgr_A          204 FTKANFDKESERHFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE  281 (876)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            3 111 11111112577777788776  889999999999998743 222122223367888888888888999999999


Q ss_pred             HHHHHcCCcC-------------------chHHH--HhCCCHHHHHHHHccCC----CCCHHHHHHHHHHHHHHhcChhh
Q 003008          253 VLANLALSKS-------------------NHNIL--VEAGVIPKLAMLLKANV----EGSKVIRKEARNALIELAKDDYY  307 (858)
Q Consensus       253 ~L~nL~~~~~-------------------~~~~i--~~~g~i~~Lv~ll~~~~----~~~~~~~~~a~~aL~nl~~~~~~  307 (858)
                      .+.+++....                   ....+  .-...++.+++.+....    ++....+..+..+|..++..-..
T Consensus       282 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~  361 (876)
T 1qgr_A          282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH
Confidence            9988875310                   00000  00234667777775321    11234788888888888763211


Q ss_pred             HHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhh
Q 003008          308 RILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSR  387 (858)
Q Consensus       308 ~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~  387 (858)
                        .++. ..++ .+...                      +...+...+..++.+|..++.+..     ...+...     
T Consensus       362 --~~~~-~~l~-~l~~~----------------------l~~~~~~~r~~a~~~l~~i~~~~~-----~~~~~~~-----  405 (876)
T 1qgr_A          362 --DIVP-HVLP-FIKEH----------------------IKNPDWRYRDAAVMAFGCILEGPE-----PSQLKPL-----  405 (876)
T ss_dssp             --GGHH-HHHH-HHHHH----------------------TTCSSHHHHHHHHHHHHHTSSSSC-----HHHHHHH-----
T ss_pred             --hhHH-HHHH-HHHHH----------------------ccCCChHHHHHHHHHHHHHHcCCC-----HHHHHHH-----
Confidence              1111 1122 12222                      111122345557777877754321     0001000     


Q ss_pred             hhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhH-HHHHHcCcH
Q 003008          388 QHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMR-MLFKEAGAI  465 (858)
Q Consensus       388 ~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~-~~l~~~g~i  465 (858)
                                                      ....++.++..++++++.++..|+++|.+++. .+... ..-.-...+
T Consensus       406 --------------------------------~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l  453 (876)
T 1qgr_A          406 --------------------------------VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL  453 (876)
T ss_dssp             --------------------------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHH
T ss_pred             --------------------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHH
Confidence                                            01257788899999999999999999999553 22110 000113567


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHhhcChh----------------HHHHHHHcCChHHHHHhhcCCCc-c---------
Q 003008          466 KYLVKLLDHSSDAVRLATTHALERLSVSRG----------------VCQIMEAEGVVHPLVNTLKNLDI-S---------  519 (858)
Q Consensus       466 ~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~----------------~~~~l~~~g~i~~Li~lL~~~~~-~---------  519 (858)
                      +.|+..+.++ +.++..++++|.+++....                ....+  ...++.|+.++...+. +         
T Consensus       454 ~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~  530 (876)
T 1qgr_A          454 QCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYE  530 (876)
T ss_dssp             HHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHH
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHH
Confidence            7888888775 8999999999999875211                11111  1234444444443210 1         


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHHhcCCCcccccccccccCcCc
Q 003008          520 -----------------------------------------------ESLMEKTLDILGRILDPSKEMKSKFYDIPVNGS  552 (858)
Q Consensus       520 -----------------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i  552 (858)
                                                                     .+++..+..++..+...-..  ....-.-...+
T Consensus       531 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~l~  608 (876)
T 1qgr_A          531 SLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH--QDALQISDVVM  608 (876)
T ss_dssp             HHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHTTHHHHH
T ss_pred             HHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh--hhhhHHHHHHH
Confidence                                                           12233344444444431000  00000001235


Q ss_pred             HHHHHhhcCCC--hhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCC-CHHHHHHHHHHHHHhhcC
Q 003008          553 EKGLDAAESLD--PSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTS-YPDLQRKAASILEFITII  621 (858)
Q Consensus       553 ~~Li~ll~s~d--~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~  621 (858)
                      +.++.++++.+  +.++..++ ++..++...........+ ..+|.++..+.+. ++.++..++++++.+...
T Consensus       609 ~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~  680 (876)
T 1qgr_A          609 ASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA  680 (876)
T ss_dssp             HHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence            56677777653  46777777 887776533221122222 3678888888876 889999999999998753

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.47  E-value=2.9e-11  Score=136.14  Aligned_cols=404  Identities=12%  Similarity=0.043  Sum_probs=264.0

Q ss_pred             cCCCcHHHHHHHhcCC-CCHHHHHHHHHHHHHcccCCcc-----------------cHHHHHHhcCcHHHHHHHHccCCH
Q 003008           99 FGDSYVALFVQMLGLD-YDPLDREQAVEALWKYSLGGKK-----------------CIDYIMQFSGCINLTVNLLRSESS  160 (858)
Q Consensus        99 ~~~g~i~~lv~lL~~s-~d~~~~~~a~~~L~~la~~~~~-----------------~~~~ii~~~g~i~~Li~lL~~~~~  160 (858)
                      ++.++++.|+..|+.+ .|.++...++.+|.++-..++.                 ..+.++++.+.++.|+.+|++.+.
T Consensus        57 Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df  136 (651)
T 3grl_A           57 VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF  136 (651)
T ss_dssp             HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH
T ss_pred             hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH
Confidence            5678899999999744 4778888899999886543221                 223566778999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCc-h-hHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch-HHHHHhCCCHHHHH
Q 003008          161 AACEAAAGLLRSISSIN-V-YRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH-RLKIANTDILPLLI  236 (858)
Q Consensus       161 ~~~~~a~~aL~nLs~~~-~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv  236 (858)
                      .+|..++..|..|+.+. + +++.|.. .++|+.|+.+|.+.  ...++..++.+|.+|+.++.+ +..++-+|+++.|+
T Consensus       137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~--rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf  214 (651)
T 3grl_A          137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS--REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLL  214 (651)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc--hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHH
Confidence            99999999999998755 3 8999996 59999999999987  899999999999999987766 45555779999999


Q ss_pred             HHHccCC----HHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHccCCCC---CH-H--HHHHHHHHHHHHhcC-
Q 003008          237 KSLEDEN----MKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLKANVEG---SK-V--IRKEARNALIELAKD-  304 (858)
Q Consensus       237 ~ll~~~~----~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~---~~-~--~~~~a~~aL~nl~~~-  304 (858)
                      .+++.+.    ..+.+.|+.+|.||...+ .++..+.+.|+++.|..+|+.+.+.   ++ .  ....+..++.-|+.. 
T Consensus       215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~  294 (651)
T 3grl_A          215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN  294 (651)
T ss_dssp             HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence            9998753    368899999999998764 6888999999999999999754322   11 1  111245555556552 


Q ss_pred             ------hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHH
Q 003008          305 ------DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAK  378 (858)
Q Consensus       305 ------~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~  378 (858)
                            ..|+..+.+.|++. +|++++. .+.         .          ....+..+..++..+..++         
T Consensus       295 ~~~~~t~~nQ~~~~~~g~l~-~Ll~ll~-~~~---------~----------p~~i~~~Al~tla~~irgN---------  344 (651)
T 3grl_A          295 NPPGATSSCQKAMFQCGLLQ-QLCTILM-ATG---------V----------PADILTETINTVSEVIRGC---------  344 (651)
T ss_dssp             SCHHHHHHHHHHHHHTTHHH-HHHHHHT-CSS---------C----------CHHHHHHHHHHHHHHHTTC---------
T ss_pred             CCCCCCHHHHHHHHHCCCHH-HHHHHHc-cCC---------C----------CHHHHHHHHHHHHHHHhCC---------
Confidence                  25788999999999 5999741 000         0          1133344555665554333         


Q ss_pred             HhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCC-CHHHHHHHHHHHHH-hcCChhhH
Q 003008          379 MNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLE-DERAIARAAESIAD-ISINEHMR  456 (858)
Q Consensus       379 ~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~-l~~~~~~~  456 (858)
                            ...|..++....   ..       .++        ..-.+.-|+.++++. ..++|..|+.++.. +..+++.+
T Consensus       345 ------~~~Q~~fa~~~v---p~-------~~~--------~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q  400 (651)
T 3grl_A          345 ------QVNQDYFASVNA---PS-------NPP--------RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQ  400 (651)
T ss_dssp             ------HHHHHHHHHCEE---SS-------SSC--------EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ------HHHHHHHhhccC---CC-------CCC--------cChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHH
Confidence                  123334443321   00       000        011334455666554 57889999999988 67888877


Q ss_pred             HHHHHc------C----c---HHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHc------C-----ChHHHHH
Q 003008          457 MLFKEA------G----A---IKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAE------G-----VVHPLVN  511 (858)
Q Consensus       457 ~~l~~~------g----~---i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~------g-----~i~~Li~  511 (858)
                      ..++..      +    .   -..|..-+-+.++---..|+.+|..+-. +++.+..+.+-      |     .++.+..
T Consensus       401 ~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~  480 (651)
T 3grl_A          401 GEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTN  480 (651)
T ss_dssp             HHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHH
T ss_pred             HHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHH
Confidence            777643      1    1   1234444445566555567777888777 67777665541      1     2555566


Q ss_pred             hhcCCCccHHHHHHHHHHHHHhcCCCccccccc-ccccCcCcHHHHHhhcC
Q 003008          512 TLKNLDISESLMEKTLDILGRILDPSKEMKSKF-YDIPVNGSEKGLDAAES  561 (858)
Q Consensus       512 lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~i~~~~~i~~Li~ll~s  561 (858)
                      +|.. ..+..++.--...|..-...  ++.... .+.+...++.|+..+..
T Consensus       481 ~L~~-~~~~ri~vgyL~LL~~WL~e--~p~AV~dFL~~~s~l~~L~~~i~~  528 (651)
T 3grl_A          481 ILSQ-GSKIQTRVGLLMLLCTWLSN--CPIAVTHFLHNSANVPFLTGQIAE  528 (651)
T ss_dssp             HTTT-TCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHSTTHHHHHHHHHHS
T ss_pred             HHhc-CCchhHHHHHHHHHHHHHhC--ChHHHHHHHcCCchHHHHHHHHHh
Confidence            6653 33444333222222222221  122111 23333457777776643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.46  E-value=5.5e-12  Score=133.11  Aligned_cols=254  Identities=13%  Similarity=0.093  Sum_probs=182.2

Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008          422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME  501 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~  501 (858)
                      ..++.|+.+|.++++.++..|+++|+++..          .++++.|+.+|.++++.+|..|+++|+.+.........  
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~--   90 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN--   90 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH--
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH--
Confidence            378899999999999999999999999764          45799999999999999999999999999853321111  


Q ss_pred             HcCChHHHHH-hhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcc
Q 003008          502 AEGVVHPLVN-TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSE  579 (858)
Q Consensus       502 ~~g~i~~Li~-lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~  579 (858)
                         .++.|.. ++.  +.+..++..+..+|.++.....       ......++.++.++.++++.++..++ ++.++.. 
T Consensus        91 ---l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~-------~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-  157 (280)
T 1oyz_A           91 ---VFNILNNMALN--DKSACVRATAIESTAQRCKKNP-------IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-  157 (280)
T ss_dssp             ---HHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCG-------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             ---HHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCC-------cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence               2233332 334  3458899999999999873110       01123477788888888888888887 7665421 


Q ss_pred             ccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCC
Q 003008          580 TTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPE  659 (858)
Q Consensus       580 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~  659 (858)
                                .+.++.|++++.++++.++..|+++|+.+...                                      
T Consensus       158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------------------------------------  189 (280)
T 1oyz_A          158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYD--------------------------------------  189 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------------------------------------
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------------------------------------
Confidence                      24678888888888888888887777554210                                      


Q ss_pred             ccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccch
Q 003008          660 KYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPIN  739 (858)
Q Consensus       660 ~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  739 (858)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (280)
T 1oyz_A          190 --------------------------------------------------------------------------------  189 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC
Q 003008          740 MEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD  819 (858)
Q Consensus       740 ~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~  819 (858)
                          ...+++.|+.+|+++++.||..|+.+|.++..            ...++.|+++|++++  +|..|+.+|.++.. 
T Consensus       190 ----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-  250 (280)
T 1oyz_A          190 ----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD-  250 (280)
T ss_dssp             ----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-
T ss_pred             ----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-
Confidence                01135667777788888899999999887642            234588888887754  88888888888754 


Q ss_pred             ccchHHHHHcCchHHHHHhhhc-CChhH-HHHHHHHhcC
Q 003008          820 SENHSAIIAAGAVPALRRIVLS-QRPQW-TRALRLLRNL  856 (858)
Q Consensus       820 ~~~~~~i~~~g~v~~L~~ll~~-~~~~~-~~al~~l~~l  856 (858)
                               ..+++.|..++.+ +++.. ..++..|.++
T Consensus       251 ---------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~~  280 (280)
T 1oyz_A          251 ---------KTLLPVLDTMLYKFDDNEIITSAIDKLKRS  280 (280)
T ss_dssp             ---------GGGHHHHHHHHTTSSCCHHHHHHHHHHTCC
T ss_pred             ---------hhhhHHHHHHHhcCCCcHHHHHHHHHhhcC
Confidence                     2467888888764 45555 7777777653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.42  E-value=6.3e-11  Score=145.60  Aligned_cols=398  Identities=11%  Similarity=0.050  Sum_probs=232.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc--hhH
Q 003008          104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN--VYR  180 (858)
Q Consensus       104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~--~~~  180 (858)
                      ...++..|. ++++.+|..+..+|..++......  ..  -...++.|+..+.++ ++.+++.++.+|..++..-  +.+
T Consensus        97 k~~ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p~--~~--w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~  171 (861)
T 2bpt_A           97 KTNALTALV-SIEPRIANAAAQLIAAIADIELPH--GA--WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ  171 (861)
T ss_dssp             HHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGG--TC--CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS
T ss_pred             HHHHHHHHC-CCchHHHHHHHHHHHHHHHhhCcc--cc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh
Confidence            356778887 777889999999998887542110  00  134678888999888 9999999999999997632  211


Q ss_pred             --HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cch-HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008          181 --DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKH-RLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN  256 (858)
Q Consensus       181 --~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n  256 (858)
                        .... ...++.+...+.++..++.++..++.+|.++... +.+ .........++.|...+.++++.++..++.+|..
T Consensus       172 ~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~  250 (861)
T 2bpt_A          172 ALVSSS-NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCK  250 (861)
T ss_dssp             TTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence              0011 2246777777776422688999999999987421 111 0000011246677777888899999999999999


Q ss_pred             HcCCcC--chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHH-HH----------------cCCc
Q 003008          257 LALSKS--NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILI-IE----------------EGLV  317 (858)
Q Consensus       257 L~~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i-~~----------------~g~v  317 (858)
                      ++....  ....+. ...++.+...+...   .+.++..+...+..++........- .+                ...+
T Consensus       251 l~~~~~~~~~~~l~-~~l~~~~~~~~~~~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il  326 (861)
T 2bpt_A          251 IMSKYYTFMKPYME-QALYALTIATMKSP---NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV  326 (861)
T ss_dssp             HHHHHGGGCHHHHH-HTHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence            975422  111111 14455555555443   4568889999998888653211100 00                1112


Q ss_pred             ccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcc
Q 003008          318 PVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAI  397 (858)
Q Consensus       318 ~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~  397 (858)
                      +. ++..+.  +.           +..                      .++++..+...+...+..      +....  
T Consensus       327 ~~-ll~~l~--~~-----------~~d----------------------~~d~~~~~r~~a~~~L~~------l~~~~--  362 (861)
T 2bpt_A          327 PN-LLNLLT--RQ-----------NED----------------------PEDDDWNVSMSAGACLQL------FAQNC--  362 (861)
T ss_dssp             HH-HHHHTT--CC-----------CCC-----------------------CCCCCHHHHHHHHHHHH------HHHHH--
T ss_pred             HH-HHHHHH--hc-----------ccc----------------------cccccCcHHHHHHHHHHH------HHHHc--
Confidence            21 222110  00           000                      000000111111111111      11110  


Q ss_pred             cccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCCh--hhHHHHHHcCcHHHHHHhhcCC
Q 003008          398 ESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINE--HMRMLFKEAGAIKYLVKLLDHS  475 (858)
Q Consensus       398 ~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~l~~~g~i~~Lv~LL~~~  475 (858)
                                        ..-.....++.+...++++++.++..|+.+++.++...  +.-.... ...++.|+..+.++
T Consensus       363 ------------------~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~  423 (861)
T 2bpt_A          363 ------------------GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ  423 (861)
T ss_dssp             ------------------GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS
T ss_pred             ------------------cHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC
Confidence                              00001125566777888999999999999999976432  2222222 35788999999999


Q ss_pred             cHHHHHHHHHHHHHhhcC--hhH--HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccccccc--C
Q 003008          476 SDAVRLATTHALERLSVS--RGV--CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP--V  549 (858)
Q Consensus       476 ~~~v~~~a~~aL~~Ls~~--~~~--~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~--~  549 (858)
                      ++.+|..++++|+.++..  +..  ...+  ...++.++..+.+ +  ..++..++++|.+++....+. ....+.+  .
T Consensus       424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~-~--~~v~~~a~~al~~l~~~~~~~-~~~~l~~~~~  497 (861)
T 2bpt_A          424 SLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQD-H--PKVATNCSWTIINLVEQLAEA-TPSPIYNFYP  497 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTS-C--HHHHHHHHHHHHHHHHHHSSS-SSCGGGGGHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhcc-C--hHHHHHHHHHHHHHHHhcccc-cchhhHHHHH
Confidence            999999999999999862  110  1111  1346777777763 2  788999999999887521100 0001111  2


Q ss_pred             cCcHHHHHhhcCCC--hhHHHHHH-HHHHhhccc
Q 003008          550 NGSEKGLDAAESLD--PSIELTGN-VIEAAVSET  580 (858)
Q Consensus       550 ~~i~~Li~ll~s~d--~~v~~~a~-~l~~L~~~~  580 (858)
                      ..++.++..+.+.|  +.++..++ ++..++...
T Consensus       498 ~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~  531 (861)
T 2bpt_A          498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYA  531 (861)
T ss_dssp             HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence            34667778887544  67787777 887776543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.37  E-value=1.6e-09  Score=133.23  Aligned_cols=364  Identities=12%  Similarity=0.033  Sum_probs=212.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCchhHHH
Q 003008          105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSINVYRDL  182 (858)
Q Consensus       105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~~~~~~  182 (858)
                      +.++..|. ++++.+ ..++.++..++......  .-  -...++.|+..+.++  ++.++..++.+|..++..-. .+.
T Consensus        93 ~~ll~~l~-~~~~~~-~~~~~~l~~i~~~~~~~--~~--w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~  165 (876)
T 1qgr_A           93 NYVLHTLG-TETYRP-SSASQCVAGIACAEIPV--NQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQ  165 (876)
T ss_dssp             HHHHHHTT-TCCSSS-CHHHHHHHHHHHHHGGG--TC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-HHH
T ss_pred             HHHHHHhC-CCcHHH-HHHHHHHHHHHHhhCcc--cc--cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-Hhh
Confidence            44777776 555556 77777777776532110  01  256789999999998  89999999999999975311 111


Q ss_pred             HHh--cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cch-HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008          183 VAE--CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKH-RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA  258 (858)
Q Consensus       183 i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~  258 (858)
                      +..  ...++.+...+.++..+..++..++.+|.++... +.+ .........++.+...+.+.+.+++..++.+|..+.
T Consensus       166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~  245 (876)
T 1qgr_A          166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM  245 (876)
T ss_dssp             HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            111  2346777788876511578999999999998642 111 001111125677777787888999999999999997


Q ss_pred             CCcCch-HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHH----HHHHcCCcccccccccccccCCcc
Q 003008          259 LSKSNH-NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRI----LIIEEGLVPVPMVGADAYKSFRPE  333 (858)
Q Consensus       259 ~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~----~i~~~g~v~~~Lv~ll~~~~~~~~  333 (858)
                      ...... ........++.++..+.+.   .+.++..++..+.+++.......    .....+.-+  ....         
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~---------  311 (876)
T 1qgr_A          246 SLYYQYMETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP--EHTS---------  311 (876)
T ss_dssp             HHSGGGCHHHHTTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC--SSCC---------
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCc--cchh---------
Confidence            543211 1223335677777776543   45588889988888876431100    000111000  0000         


Q ss_pred             CCCCCCCCCcchhhcccCCchhhHHHHHHhc-cCCC-----CCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCC
Q 003008          334 LHSWPSLPDGTEIERTSQGPSKFGANELLLG-LNVS-----DKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQS  407 (858)
Q Consensus       334 l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~n-L~~~-----~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l  407 (858)
                                ....+    .........+.. +...     +++..+..++...+..      +.....           
T Consensus       312 ----------~~~~~----~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~------l~~~~~-----------  360 (876)
T 1qgr_A          312 ----------KFYAK----GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML------LATCCE-----------  360 (876)
T ss_dssp             ----------CCHHH----HHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHH------HHHHHG-----------
T ss_pred             ----------HHHHH----HHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHH------HHHHCc-----------
Confidence                      00000    000011111111 1110     1111222222222211      111110           


Q ss_pred             CCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-h-hhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHH
Q 003008          408 EFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISIN-E-HMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH  485 (858)
Q Consensus       408 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~-~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~  485 (858)
                          +   .  .....++.+...+.++++.++..|+.+|+.++.. . +..... -...++.|+..+.++++.||..|++
T Consensus       361 ----~---~--~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~  430 (876)
T 1qgr_A          361 ----D---D--IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAW  430 (876)
T ss_dssp             ----G---G--GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             ----H---h--hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                0   0  0123566777888899999999999999997643 2 322222 2458999999999999999999999


Q ss_pred             HHHHhhc-ChhH---HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          486 ALERLSV-SRGV---CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       486 aL~~Ls~-~~~~---~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                      +|++++. .+..   ...+  ...++.|+..+.+ +  ..++..++++|.+++.
T Consensus       431 ~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~-~--~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          431 TVGRICELLPEAAINDVYL--APLLQCLIEGLSA-E--PRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS-C--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchhcccHHHH--HHHHHHHHHHHcC-C--HHHHHHHHHHHHHHHH
Confidence            9999987 2221   1111  1356777777764 2  7789999999998875

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.35  E-value=1e-10  Score=123.33  Aligned_cols=254  Identities=16%  Similarity=0.106  Sum_probs=171.7

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY  179 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~  179 (858)
                      ..+.++.|+..|+ ++++.+|..|+++|.++..            .+.++.|+.++.++++.+|..|+++|..+......
T Consensus        21 ~~~~i~~L~~~L~-~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           21 KKLNDDELFRLLD-DHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HTSCHHHHHHHTT-CSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHhhHHHHHHHHH-cCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            4567888999887 7888888888888887652            23467788888888888898899999888654322


Q ss_pred             HHHHHhcCcHHHHHH-HhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008          180 RDLVAECGAIEEITG-LLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL  257 (858)
Q Consensus       180 ~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL  257 (858)
                      ...     .++.|.. +++++  ++.++..++++|.++... +...     ...++.|+.++.++++.++..++++|.++
T Consensus        88 ~~~-----l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~  155 (280)
T 1oyz_A           88 EDN-----VFNILNNMALNDK--SACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVI  155 (280)
T ss_dssp             HHH-----HHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             chH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence            111     2344442 45665  888898899999888632 2111     13467888888888888888888888876


Q ss_pred             cCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCC
Q 003008          258 ALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSW  337 (858)
Q Consensus       258 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~  337 (858)
                      ..          .+.++.|+.++++.   .+.++..++.+|.++..+..                               
T Consensus       156 ~~----------~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~~~~~-------------------------------  191 (280)
T 1oyz_A          156 ND----------KATIPLLINLLKDP---NGDVRNWAAFAININKYDNS-------------------------------  191 (280)
T ss_dssp             -------------CCHHHHHHHHTCS---SHHHHHHHHHHHHHHTCCCH-------------------------------
T ss_pred             CC----------HHHHHHHHHHHcCC---CHHHHHHHHHHHHhhccCcH-------------------------------
Confidence            43          34788888888654   34466677666655431100                               


Q ss_pred             CCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccc
Q 003008          338 PSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL  417 (858)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~  417 (858)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (280)
T 1oyz_A          192 --------------------------------------------------------------------------------  191 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHH
Q 003008          418 LPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVC  497 (858)
Q Consensus       418 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~  497 (858)
                          ..++.|+.+|+++++.++..|+++|+++..          ..+++.|+.++.+++  +|..++.+|+.+..     
T Consensus       192 ----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----  250 (280)
T 1oyz_A          192 ----DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----  250 (280)
T ss_dssp             ----HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----
Confidence                123455666677778888888888888763          457888888887654  78888888888764     


Q ss_pred             HHHHHcCChHHHHHhhcCCCccHHHHHHHHHH
Q 003008          498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDI  529 (858)
Q Consensus       498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~  529 (858)
                           ...++.|..++.+... ..+...+...
T Consensus       251 -----~~~~~~L~~~l~~~~~-~~~~~~~~~~  276 (280)
T 1oyz_A          251 -----KTLLPVLDTMLYKFDD-NEIITSAIDK  276 (280)
T ss_dssp             -----GGGHHHHHHHHTTSSC-CHHHHHHHHH
T ss_pred             -----hhhhHHHHHHHhcCCC-cHHHHHHHHH
Confidence                 2467788888864333 3444444433

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.31  E-value=2.8e-09  Score=125.15  Aligned_cols=369  Identities=16%  Similarity=0.125  Sum_probs=235.3

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003008          147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKI  226 (858)
Q Consensus       147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i  226 (858)
                      +....++++.+.+.+.+..+.-.+.+++..++....+    ++..+.+-|+++  ++.++..|+++|+++.. ++    +
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l----~in~l~kDL~~~--n~~vr~lAL~~L~~i~~-~~----~  139 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL----MTNCIKNDLNHS--TQFVQGLALCTLGCMGS-SE----M  139 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHHHHHSCS--SSHHHHHHHHHHHHHCC-HH----H
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHhcCCC--CHhHHHHHHHHHHhcCC-HH----H
Confidence            5566778888999999988888888887654321112    478888888988  99999999999999984 22    2


Q ss_pred             HhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-
Q 003008          227 ANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD-  305 (858)
Q Consensus       227 ~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-  305 (858)
                      . ...++.+.+++.+.++.++..|+.++.++.....   .+++ +.++.+..++...   .+.++..|+.+|..++.+. 
T Consensus       140 ~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p---~~v~-~~~~~l~~lL~D~---d~~V~~~Al~~L~~i~~~~~  211 (618)
T 1w63_A          140 C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP---ELME-MFLPATKNLLNEK---NHGVLHTSVVLLTEMCERSP  211 (618)
T ss_dssp             H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG---GGGG-GGGGGTTTSTTCC---CHHHHHHHHHHHHHHCCSHH
T ss_pred             H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh---HHHH-HHHHHHHHHhCCC---CHhHHHHHHHHHHHHHHhCh
Confidence            2 2457889999999999999999999999986422   1222 5667777777543   4568899999999999753 


Q ss_pred             hhHHHHHHcCCccccccccccc---ccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhh
Q 003008          306 YYRILIIEEGLVPVPMVGADAY---KSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAM  382 (858)
Q Consensus       306 ~~~~~i~~~g~v~~~Lv~ll~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~l  382 (858)
                      +....+  ...++. |++++.-   ....+.+          ..-...+.+.+...+.+|..+...+.      ..-   
T Consensus       212 ~~~~~~--~~~v~~-l~~~L~~~~~~~~~~~~----------~~~~~~~~~~q~~il~~L~~l~~~~~------~~~---  269 (618)
T 1w63_A          212 DMLAHF--RKLVPQ-LVRILKNLIMSGYSPEH----------DVSGISDPFLQVRILRLLRILGRNDD------DSS---  269 (618)
T ss_dssp             HHHHHH--HTTHHH-HHHHHHHHHHSCCCTTT----------CSSSSSCHHHHHHHHHHHHHHTTTCH------HHH---
T ss_pred             HHHHHH--HHHHHH-HHHHHHHHHcCCCCccc----------cccCCCCChHHHHHHHHHHHhCCCCH------HHH---
Confidence            321222  144553 5554210   0000000          00000112333334444444432210      000   


Q ss_pred             hhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHh------CCCCHHHHHHHHHHHHHhcCChhhH
Q 003008          383 VGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLIL------GLEDERAIARAAESIADISINEHMR  456 (858)
Q Consensus       383 i~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL------~~~~~~v~~~a~~aL~~l~~~~~~~  456 (858)
                                                            +...+.|..++      ++.+..++..|++++..+...+..+
T Consensus       270 --------------------------------------~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~  311 (618)
T 1w63_A          270 --------------------------------------EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR  311 (618)
T ss_dssp             --------------------------------------HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             --------------------------------------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH
Confidence                                                  00112222222      2234578899999999976544332


Q ss_pred             HHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          457 MLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS-RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       457 ~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                           ..+++.|..++.++++.+|..|..+|..++.. +.   .+  ......++.++.+++  ..++..+..+|..++.
T Consensus       312 -----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~--~~~~~~i~~~l~d~d--~~Ir~~alelL~~l~~  379 (618)
T 1w63_A          312 -----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AV--QRHRSTIVDCLKDLD--VSIKRRAMELSFALVN  379 (618)
T ss_dssp             -----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HH--GGGHHHHHHGGGSSC--HHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HH--HHHHHHHHHHccCCC--hhHHHHHHHHHHHHcc
Confidence                 24688999999999999999999999999862 22   22  124567888888444  8999999999999987


Q ss_pred             CCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHH
Q 003008          536 PSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASI  614 (858)
Q Consensus       536 ~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~  614 (858)
                      .   ...      ...+..+...+.+.|.+++..++ +|..++...... .    ...++.|+++++.....+...++..
T Consensus       380 ~---~nv------~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~-~----~~~v~~ll~lL~~~~~~v~~~~~~~  445 (618)
T 1w63_A          380 G---NNI------RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS-K----RWHIDTIMRVLTTAGSYVRDDAVPN  445 (618)
T ss_dssp             S---SST------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC-H----HHHHHHHHHHHHHTGGGSCSSHHHH
T ss_pred             c---ccH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc-H----HHHHHHHHHHHHhccchhHHHHHHH
Confidence            2   111      11356778888888899998888 888887644221 0    1236778888876655454445555


Q ss_pred             HHHhhc
Q 003008          615 LEFITI  620 (858)
Q Consensus       615 L~~l~~  620 (858)
                      +..+..
T Consensus       446 l~~ii~  451 (618)
T 1w63_A          446 LIQLIT  451 (618)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.30  E-value=4.7e-09  Score=134.05  Aligned_cols=669  Identities=10%  Similarity=0.038  Sum_probs=329.6

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD  181 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~  181 (858)
                      -.++.++.-+. ++|+++|..|...|.+....+....+... ....++.+++.|.+.+..+|..|+.+|.+++..-.. .
T Consensus         6 ~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~-~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~   82 (1230)
T 1u6g_C            6 YHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDS-ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-Y   82 (1230)
T ss_dssp             HHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-H
T ss_pred             hHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-H
Confidence            34677787776 89999999999888876543321100001 235678889999999999999999999999864321 1


Q ss_pred             HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchH------HHHHhCCCHHHHHHHHc-cCCHHHHHHHHHHH
Q 003008          182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR------LKIANTDILPLLIKSLE-DENMKVKEAAGGVL  254 (858)
Q Consensus       182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~------~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L  254 (858)
                       .. ...++.|+..+.++  ++.++..++.+|..++..-...      ..-.....+|.|+..+. ++++.++..++.+|
T Consensus        83 -~~-~~i~~~Ll~~l~d~--~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l  158 (1230)
T 1u6g_C           83 -QV-ETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM  158 (1230)
T ss_dssp             -HH-HHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred             -HH-HHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence             11 22478888888877  7888999999999887321111      11112346889999998 57899999999999


Q ss_pred             HHHcCC--cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCc
Q 003008          255 ANLALS--KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRP  332 (858)
Q Consensus       255 ~nL~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~  332 (858)
                      ..++..  ......+  ...++.|+..|.+.   .+.+|..|+.+|..++......  . -...++ .|++.+. ....+
T Consensus       159 ~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~---~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~-~l~~~L~-~~~~~  228 (1230)
T 1u6g_C          159 ADMLSRQGGLLVNFH--PSILTCLLPQLTSP---RLAVRKRTIIALGHLVMSCGNI--V-FVDLIE-HLLSELS-KNDSM  228 (1230)
T ss_dssp             HHHHHHTCSSCTTTH--HHHHHHHGGGGGCS---SHHHHHHHHHHHHHHTTTC-------CTTHHH-HHHHHHH-HTCSS
T ss_pred             HHHHHHhHhHHHHHH--HHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhcCHH--H-HHHHHH-HHHHHhc-cCCch
Confidence            999742  1111111  23456666666543   4568999999999998742211  0 011122 1333221 00000


Q ss_pred             c--------CCCCCC-CCC----c-c-------hhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHH
Q 003008          333 E--------LHSWPS-LPD----G-T-------EIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFL  391 (858)
Q Consensus       333 ~--------l~~~~~-~~~----~-~-------~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L  391 (858)
                      .        +..+.. .+.    . .       ..+...+...+..+..++..+...... .+. ..+..++.     .+
T Consensus       229 ~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~~l~~li~-----~l  301 (1230)
T 1u6g_C          229 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK-EVY-PHVSTIIN-----IC  301 (1230)
T ss_dssp             CSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC-CCH-HHHHHHHH-----HH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH-HHH-HhHHHHHH-----HH
Confidence            0        000000 000    0 0       000000111111222222222110000 000 00011110     00


Q ss_pred             HHhhcccccCCCCCCCCCCcc--ccccc--ccccc-cHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcH
Q 003008          392 VRIGAIESEDGRKPQSEFPID--RQLTL--LPWID-GVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAI  465 (858)
Q Consensus       392 ~~~~~~~~~~~~~~~l~~~~~--~~~~~--l~~~~-~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i  465 (858)
                      .+.-..   +... .......  +.+..  ...+. ....-...-.+..++++..|+.+|..++. .++.-. -+-...+
T Consensus       302 l~~l~~---d~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~-~~~~~l~  376 (1230)
T 1u6g_C          302 LKYLTY---DPNY-NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP-EFYKTVS  376 (1230)
T ss_dssp             TTCCCC---C-------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH-HHHTTTH
T ss_pred             HHHhCC---CCCC-CCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH-HHHHHHH
Confidence            000000   0000 0000000  00000  00000 00000000012235678899999998553 222111 2225567


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHHhhcC--h---------------hHHHHHHH--cCChHHHHHhhcCCCccHHHHHHH
Q 003008          466 KYLVKLLDHSSDAVRLATTHALERLSVS--R---------------GVCQIMEA--EGVVHPLVNTLKNLDISESLMEKT  526 (858)
Q Consensus       466 ~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~---------------~~~~~l~~--~g~i~~Li~lL~~~~~~~~~~~~a  526 (858)
                      +.|+..+.+.+..+|..+..++..+...  .               .....+..  ...++.+...+++++  ..++..+
T Consensus       377 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~--~~vr~~~  454 (1230)
T 1u6g_C          377 PALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS--VKTRQCC  454 (1230)
T ss_dssp             HHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC--HHHHHHH
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC--HHHHHHH
Confidence            8888888888899999999988877641  0               01111111  123455555677444  7788888


Q ss_pred             HHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCCh--hHHHHHH-HHHHhhccccch-hhhHhhccchhHHHHhhcC
Q 003008          527 LDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDP--SIELTGN-VIEAAVSETTTS-YGKVLDSVFIGRMIGIMKT  602 (858)
Q Consensus       527 ~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~--~v~~~a~-~l~~L~~~~~~~-~~~i~~~g~i~~L~~lL~s  602 (858)
                      ..+|..+.....+.-..   .-...++.++..+.++++  +++..++ .+..+....... ..... ...+|.++..+.+
T Consensus       455 ~~~L~~l~~~~~~~l~~---~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l-~~llp~L~~~l~d  530 (1230)
T 1u6g_C          455 FNMLTELVNVLPGALTQ---HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV-QALVPPVVACVGD  530 (1230)
T ss_dssp             HHHHHHHHHHSTTTTGG---GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH-TTTHHHHHHHHTC
T ss_pred             HHHHHHHHHHchhhhHH---HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH-HHHHHHHHHHHcc
Confidence            88888877521111000   012346777888887654  7887777 777665322111 01112 3568889999999


Q ss_pred             CCHHHHHHHHHHHHHhhcC--C------cchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHH
Q 003008          603 SYPDLQRKAASILEFITII--D------PSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISA  674 (858)
Q Consensus       603 ~~~~v~~~a~~~L~~l~~~--~------~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~  674 (858)
                      .+..++..++.++..++..  .      .....+    ...-+..++  ..+...+.+.+.                ...
T Consensus       531 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~----~~~ll~~ll--~~l~~~d~~~~v----------------r~~  588 (1230)
T 1u6g_C          531 PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPY----IKDLFTCTI--KRLKAADIDQEV----------------KER  588 (1230)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH----HHHHHHHHH--HHHSCSSSCHHH----------------HHH
T ss_pred             cchHHHHHHHHHHHHHHHHhcCcccccccchHHH----HHHHHHHHH--HHHhccCCCHHH----------------HHH
Confidence            9998988888888888732  1      111111    112233333  334322221110                111


Q ss_pred             hhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHH
Q 003008          675 GARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQ  754 (858)
Q Consensus       675 ~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~l  754 (858)
                      ...++..+.......-......+...+...+.   ....+.....++..+.....     ...+  .......++.|.+.
T Consensus       589 a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~---~e~~r~~~~~al~~i~~~~~-----~~~~--~~~~~~i~~~L~~~  658 (1230)
T 1u6g_C          589 AISCMGQIICNLGDNLGSDLPNTLQIFLERLK---NEITRLTTVKALTLIAGSPL-----KIDL--RPVLGEGVPILASF  658 (1230)
T ss_dssp             HHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT---SSSHHHHHHHHHHHHTTCSS-----CCCC--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhhhhHHHHHHHHHHHhc---cchhHHHHHHHHHHHHhCcc-----ccch--HHHHHHHHHHHHHH
Confidence            11222222222111000111122222221111   11122233333333322110     0000  11124468888889


Q ss_pred             hccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHH----HHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcC
Q 003008          755 IKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLV----KLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAG  830 (858)
Q Consensus       755 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv----~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g  830 (858)
                      +.+.+..+|.+++.+|..+...... ..    ....+.+++    .++++.+..+...+..+|..|....+....-....
T Consensus       659 l~~~~~~~r~~a~~al~~l~~~~~~-~~----~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~  733 (1230)
T 1u6g_C          659 LRKNQRALKLGTLSALDILIKNYSD-SL----TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGS  733 (1230)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHCCT-TC----CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhcccc-cC----CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHh
Confidence            9999999999999999998765532 11    001112222    23456777888899999999976532211001234


Q ss_pred             chHHHHHhhhcC
Q 003008          831 AVPALRRIVLSQ  842 (858)
Q Consensus       831 ~v~~L~~ll~~~  842 (858)
                      +++.++.++.+.
T Consensus       734 ~l~~~~~~l~~~  745 (1230)
T 1u6g_C          734 ILNELIGLVRSP  745 (1230)
T ss_dssp             THHHHHHHHTCT
T ss_pred             HHHHHHHHHcCc
Confidence            556666655543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.27  E-value=3.6e-10  Score=113.61  Aligned_cols=92  Identities=27%  Similarity=0.283  Sum_probs=66.3

Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008          422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME  501 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~  501 (858)
                      ..++.|+.+|+++++.++..|+.+|+.+..          .++++.|+.+|.++++.+|..++.+|+.+..         
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence            367778888888888888888888877654          4577888888887778888888888877753         


Q ss_pred             HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                       .+.++.|+.++.+++  ..++..+..+|..+..
T Consensus        80 -~~~~~~L~~~l~~~~--~~vr~~a~~aL~~~~~  110 (211)
T 3ltm_A           80 -ERAVEPLIKALKDED--GWVRQSAAVALGQIGD  110 (211)
T ss_dssp             -GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC
T ss_pred             -HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc
Confidence             235677777776433  6677777777766654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.25  E-value=5.3e-10  Score=111.38  Aligned_cols=93  Identities=27%  Similarity=0.271  Sum_probs=74.6

Q ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHH
Q 003008          421 IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIM  500 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l  500 (858)
                      .+..+.++.+|+++++.++..|+.+|+.+..          .++++.|+.+|.++++.+|..++.+|+.+..        
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            3477889999999999999999999988665          4678899999988889999999999988763        


Q ss_pred             HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                        ...++.|+.++.+++  ..++..+..+|.++..
T Consensus        75 --~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~  105 (201)
T 3ltj_A           75 --ERAVEPLIKALKDED--GWVRQSAAVALGQIGD  105 (201)
T ss_dssp             --GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC
T ss_pred             --HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc
Confidence              245788888887443  7788888888877754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.22  E-value=4.5e-08  Score=114.92  Aligned_cols=321  Identities=14%  Similarity=0.098  Sum_probs=217.1

Q ss_pred             cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHH
Q 003008          188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNIL  267 (858)
Q Consensus       188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i  267 (858)
                      +...+++++.+.  +...++.+--.+.+++..+.....+    .+..|.+-|.++++.++..|+++|.++..     ..+
T Consensus        71 ~~~~vik~~~s~--~~~~Krl~Yl~~~~~~~~~~e~~~l----~in~l~kDL~~~n~~vr~lAL~~L~~i~~-----~~~  139 (618)
T 1w63_A           71 GQLECLKLIASQ--KFTDKRIGYLGAMLLLDERQDVHLL----MTNCIKNDLNHSTQFVQGLALCTLGCMGS-----SEM  139 (618)
T ss_dssp             GHHHHHHHHHSS--SHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-----HHH
T ss_pred             hHHHHHHHHcCC--chHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-----HHH
Confidence            567777888887  8999998888888888654322222    45677888899999999999999999973     123


Q ss_pred             HhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchh
Q 003008          268 VEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEI  346 (858)
Q Consensus       268 ~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~  346 (858)
                      .+ ..++.+..+|++.   .+.+|..|+.++.++.. +++...     +.++. +.+++                     
T Consensus       140 ~~-~l~~~l~~~L~~~---~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~-l~~lL---------------------  188 (618)
T 1w63_A          140 CR-DLAGEVEKLLKTS---NSYLRKKAALCAVHVIRKVPELME-----MFLPA-TKNLL---------------------  188 (618)
T ss_dssp             HH-HHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHCGGGGG-----GGGGG-TTTST---------------------
T ss_pred             HH-HHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHChHHHH-----HHHHH-HHHHh---------------------
Confidence            32 4567888888764   56799999999999987 554221     33442 44432                     


Q ss_pred             hcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHH
Q 003008          347 ERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVAR  426 (858)
Q Consensus       347 ~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~  426 (858)
                       ...+..++..|+.+|..+...+..      ....+                                      ...++.
T Consensus       189 -~D~d~~V~~~Al~~L~~i~~~~~~------~~~~~--------------------------------------~~~v~~  223 (618)
T 1w63_A          189 -NEKNHGVLHTSVVLLTEMCERSPD------MLAHF--------------------------------------RKLVPQ  223 (618)
T ss_dssp             -TCCCHHHHHHHHHHHHHHCCSHHH------HHHHH--------------------------------------HTTHHH
T ss_pred             -CCCCHhHHHHHHHHHHHHHHhChH------HHHHH--------------------------------------HHHHHH
Confidence             222224555677888777533210      00000                                      012333


Q ss_pred             HHHHhC---------------CCCHHHHHHHHHHHHHhcCC-hhhHHHHHHcCcHHHHHHhhc------CCcHHHHHHHH
Q 003008          427 LVLILG---------------LEDERAIARAAESIADISIN-EHMRMLFKEAGAIKYLVKLLD------HSSDAVRLATT  484 (858)
Q Consensus       427 Lv~lL~---------------~~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~g~i~~Lv~LL~------~~~~~v~~~a~  484 (858)
                      ++.+|.               ..++..+....++|..++.. ++..     ....+.|..+++      +.+..|...|+
T Consensus       224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~  298 (618)
T 1w63_A          224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETV  298 (618)
T ss_dssp             HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            443332               35888999999999997643 3322     334556666543      34578999999


Q ss_pred             HHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCCh
Q 003008          485 HALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDP  564 (858)
Q Consensus       485 ~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~  564 (858)
                      .++..+...+..+.     .+++.|..++.+++  ..+|..+..+|..+....++     .+  ......++..+.++|+
T Consensus       299 ~~i~~l~~~~~l~~-----~a~~~L~~~L~~~d--~~vr~~aL~~L~~i~~~~p~-----~~--~~~~~~i~~~l~d~d~  364 (618)
T 1w63_A          299 LTIMDIKSESGLRV-----LAINILGRFLLNND--KNIRYVALTSLLKTVQTDHN-----AV--QRHRSTIVDCLKDLDV  364 (618)
T ss_dssp             HHHHHSCCCHHHHH-----HHHHHHHHHHTCSS--TTTHHHHHHHHHHHHHHHHH-----HH--GGGHHHHHHGGGSSCH
T ss_pred             HHHHhcCCCHHHHH-----HHHHHHHHHHhCCC--CchHHHHHHHHHHHHhhCHH-----HH--HHHHHHHHHHccCCCh
Confidence            99999876544332     35678888887444  78999999999988861110     01  1235578888999999


Q ss_pred             hHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008          565 SIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII  621 (858)
Q Consensus       565 ~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~  621 (858)
                      +++..++ ++..++.+....  .     .++.|...+.+.+.+++..++.+++.++..
T Consensus       365 ~Ir~~alelL~~l~~~~nv~--~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          365 SIKRRAMELSFALVNGNNIR--G-----MMKELLYFLDSCEPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             HHHHHHHHHHHHHCCSSSTH--H-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcccccHH--H-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            9999999 888887654322  2     347788888889999999999999999875

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.05  E-value=6.7e-09  Score=132.63  Aligned_cols=509  Identities=13%  Similarity=0.101  Sum_probs=288.8

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhH-HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHH
Q 003008          147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYR-DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK  225 (858)
Q Consensus       147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~  225 (858)
                      .++.|+.-+.+.|+++|..|...|.+....+... ..-.....++.|++.|.+.  ++.++..|+.+|.+++..-.. ..
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~~~-~~   83 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKVKE-YQ   83 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhCCH-HH
Confidence            3567778888999999999988888765432110 0001123578899999877  999999999999999753222 11


Q ss_pred             HHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCch------HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 003008          226 IANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH------NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI  299 (858)
Q Consensus       226 i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~------~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~  299 (858)
                      +  ...++.|+..+.++++.+|..++.+|..++..-...      ..-.....+|.|...+...  .....+..|+.+|.
T Consensus        84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~--~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ--EDVSVQLEALDIMA  159 (1230)
T ss_dssp             H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC--SCHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHHH
Confidence            1  234677888888888899999999999987532211      1112235688888888631  24568899999999


Q ss_pred             HHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHH
Q 003008          300 ELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAK  378 (858)
Q Consensus       300 nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~  378 (858)
                      .++.. +..-... -...++ .|...+                      ...+...+..++.+|..+.....+       
T Consensus       160 ~~~~~~~~~l~~~-~~~ll~-~l~~~L----------------------~~~~~~vR~~a~~al~~l~~~~~~-------  208 (1230)
T 1u6g_C          160 DMLSRQGGLLVNF-HPSILT-CLLPQL----------------------TSPRLAVRKRTIIALGHLVMSCGN-------  208 (1230)
T ss_dssp             HHHHHTCSSCTTT-HHHHHH-HHGGGG----------------------GCSSHHHHHHHHHHHHHHTTTC---------
T ss_pred             HHHHHhHhHHHHH-HHHHHH-HHHHHH----------------------cCCcHHHHHHHHHHHHHHHHhcCH-------
Confidence            98852 1100000 000111 122221                      111113344455555554321100       


Q ss_pred             HhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCC-HHHHHHHHHHHHHhcC-Chh-h
Q 003008          379 MNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLED-ERAIARAAESIADISI-NEH-M  455 (858)
Q Consensus       379 ~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~l~~-~~~-~  455 (858)
                                                           ..  ....++.++..|...+ ..++..++.++..++. .++ .
T Consensus       209 -------------------------------------~~--~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~  249 (1230)
T 1u6g_C          209 -------------------------------------IV--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI  249 (1230)
T ss_dssp             -----------------------------------------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGG
T ss_pred             -------------------------------------HH--HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHH
Confidence                                                 00  1124555665554332 3455667777777432 111 1


Q ss_pred             HHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHHHcCChHHHHHhhcCC-----------------
Q 003008          456 RMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIMEAEGVVHPLVNTLKNL-----------------  516 (858)
Q Consensus       456 ~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~~~g~i~~Li~lL~~~-----------------  516 (858)
                      ..  .-...++.++..+.++++++|..+..++..++..  .+.+..+  ...++.++..+...                 
T Consensus       250 ~~--~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~  325 (1230)
T 1u6g_C          250 GE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDA  325 (1230)
T ss_dssp             TT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC-----------------
T ss_pred             HH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccc
Confidence            10  1246789999999988899999999999998862  2222221  11344444443210                 


Q ss_pred             ------------------CccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008          517 ------------------DISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAV  577 (858)
Q Consensus       517 ------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~  577 (858)
                                        +....+|+.+..+|..++....+.   ..-.-...++.++..+.+.+++++..+. ++..++
T Consensus       326 ~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~  402 (1230)
T 1u6g_C          326 DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM---LPEFYKTVSPALISRFKEREENVKADVFHAYLSLL  402 (1230)
T ss_dssp             -------------------CTTHHHHHHHHHHHHHHTTCCTT---HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred             cccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH---HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence                              001235778888888887622110   0011123467777888888889998888 776665


Q ss_pred             ccccc----------------hhhhHhh--ccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHH
Q 003008          578 SETTT----------------SYGKVLD--SVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDA  639 (858)
Q Consensus       578 ~~~~~----------------~~~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~  639 (858)
                      .....                ....+..  ...++.+.+.+++.++.++..++.+|+.+......  .+           
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~--~l-----------  469 (1230)
T 1u6g_C          403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG--AL-----------  469 (1230)
T ss_dssp             HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--TT-----------
T ss_pred             HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh--hh-----------
Confidence            32110                0000000  12234444446666766666655555544221000  00           


Q ss_pred             HHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHH
Q 003008          640 IFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAA  719 (858)
Q Consensus       640 l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  719 (858)
                                                                                                .     
T Consensus       470 --------------------------------------------------------------------------~-----  470 (1230)
T 1u6g_C          470 --------------------------------------------------------------------------T-----  470 (1230)
T ss_dssp             --------------------------------------------------------------------------G-----
T ss_pred             --------------------------------------------------------------------------H-----
Confidence                                                                                      0     


Q ss_pred             HHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCC--HHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHH
Q 003008          720 CLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFS--SEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKL  797 (858)
Q Consensus       720 ~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~l  797 (858)
                                      ..      ....++.++..|.+.+  .+++..++.++..+.....++.... .-...+|.|+..
T Consensus       471 ----------------~~------l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~-~l~~llp~L~~~  527 (1230)
T 1u6g_C          471 ----------------QH------IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP-HVQALVPPVVAC  527 (1230)
T ss_dssp             ----------------GG------HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH-HHTTTHHHHHHH
T ss_pred             ----------------HH------HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHh-HHHHHHHHHHHH
Confidence                            00      0113566677776554  5899999999988765333311221 224678889999


Q ss_pred             hhcCChHHHHHHHHHHHhhhcC--c-------cchHHHHHcCchHHHHHhh--hcCChhH-HHHHHHHhcC
Q 003008          798 IEEGSNRAVEAGLAILYNLSMD--S-------ENHSAIIAAGAVPALRRIV--LSQRPQW-TRALRLLRNL  856 (858)
Q Consensus       798 L~~~~~~v~~~a~~aL~nL~~~--~-------~~~~~i~~~g~v~~L~~ll--~~~~~~~-~~al~~l~~l  856 (858)
                      +++.+..++..|+.++..++..  +       .....  -..+++.++..+  .+.++.+ +.|+.++..+
T Consensus       528 l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L  596 (1230)
T 1u6g_C          528 VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPY--IKDLFTCTIKRLKAADIDQEVKERAISCMGQI  596 (1230)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH--HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred             HcccchHHHHHHHHHHHHHHHHhcCcccccccchHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            9999999988888888877632  1       11111  123567778877  5566666 6676666543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.03  E-value=1.4e-08  Score=114.76  Aligned_cols=155  Identities=15%  Similarity=0.091  Sum_probs=102.5

Q ss_pred             cccccHHHHHHHhCCC--CHHHHHHHHHHHHHhcC-C-hhhHHHHHHcCcHHHHHHhhcCC--cHHHHHHHHHHHHHhhc
Q 003008          419 PWIDGVARLVLILGLE--DERAIARAAESIADISI-N-EHMRMLFKEAGAIKYLVKLLDHS--SDAVRLATTHALERLSV  492 (858)
Q Consensus       419 ~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~l~~-~-~~~~~~l~~~g~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~  492 (858)
                      .|.+.++.|+..+.++  ++.++..++.+|..++. . ++.-.... ...++.+..++.++  +..||..|+.+++++..
T Consensus       125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (462)
T 1ibr_B          125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (462)
T ss_dssp             CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            3566899999999988  99999999999999653 1 22111111 24778889999887  79999999999999764


Q ss_pred             C-hhHH-HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHH
Q 003008          493 S-RGVC-QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTG  570 (858)
Q Consensus       493 ~-~~~~-~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a  570 (858)
                      . .+.- ......-.++.+...+.  +.+..++..++.+|..+.....+. .... .+.+.++.++..+.+.+++++..+
T Consensus       204 ~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~~~v~~~a  279 (462)
T 1ibr_B          204 FTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQY-METY-MGPALFAITIEAMKSDIDEVALQG  279 (462)
T ss_dssp             TTHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGG-CTTT-TTTTHHHHHHHHHHCSSHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHcCCchHHHHHH
Confidence            2 1110 01111113555556665  344889999999999987621111 0111 111456777778888889999888


Q ss_pred             H-HHHHhhc
Q 003008          571 N-VIEAAVS  578 (858)
Q Consensus       571 ~-~l~~L~~  578 (858)
                      + .+..++.
T Consensus       280 ~~~l~~~~~  288 (462)
T 1ibr_B          280 IEFWSNVCD  288 (462)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            8 7766654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.98  E-value=1.2e-08  Score=101.42  Aligned_cols=152  Identities=22%  Similarity=0.183  Sum_probs=130.5

Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008          422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME  501 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~  501 (858)
                      ..++.|+.+|+++++.++..|+++|+.+..          ..+++.|+.+|.++++.+|..|+++|+++..         
T Consensus        45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------  105 (201)
T 3ltj_A           45 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---------  105 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence            368899999999999999999999999765          4689999999999999999999999999874         


Q ss_pred             HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008          502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET  580 (858)
Q Consensus       502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~  580 (858)
                       ...++.|+.++.++  +..++..++.+|.++..             ...++.|+.++.++++.++..++ +|..+.   
T Consensus       106 -~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~---  166 (201)
T 3ltj_A          106 -ERAVEPLIKALKDE--DWFVRIAAAFALGEIGD-------------ERAVEPLIKALKDEDGWVRQSAADALGEIG---  166 (201)
T ss_dssp             -GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHTC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred             -HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence             24688899999754  48999999999999875             23588999999999999999998 777662   


Q ss_pred             cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                              +...++.|..++.++++.++..|..+|..+.
T Consensus       167 --------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          167 --------GERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             --------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             --------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                    1236788999999999999999999998874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.96  E-value=1e-08  Score=102.77  Aligned_cols=156  Identities=22%  Similarity=0.188  Sum_probs=130.4

Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008          422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME  501 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~  501 (858)
                      ..++.|+.+|.++++.++..|+++|+.+..          .++++.|+.+|.++++.+|..++.+|+.+..         
T Consensus        50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------  110 (211)
T 3ltm_A           50 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---------  110 (211)
T ss_dssp             GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence            478999999999999999999999999765          5689999999999999999999999999874         


Q ss_pred             HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008          502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET  580 (858)
Q Consensus       502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~  580 (858)
                       .+.++.|+.++.+++  ..++..++.+|.++..             ...++.|+.++.++++.++..++ +|..+.   
T Consensus       111 -~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---  171 (211)
T 3ltm_A          111 -ERAVEPLIKALKDED--WFVRIAAAFALGEIGD-------------ERAVEPLIKALKDEDGWVRQSAADALGEIG---  171 (211)
T ss_dssp             -GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred             -HHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence             346889999997544  8999999999999965             23588999999999999999998 777652   


Q ss_pred             cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008          581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP  623 (858)
Q Consensus       581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~  623 (858)
                              +...++.|.++++++++.++..|..+|.++.....
T Consensus       172 --------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          172 --------GERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             --------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             --------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence                    23467889999999999999999999998876543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.93  E-value=9.4e-06  Score=94.88  Aligned_cols=341  Identities=13%  Similarity=0.077  Sum_probs=217.5

Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHH
Q 003008          146 GCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK  225 (858)
Q Consensus       146 g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~  225 (858)
                      .+....++++.+.+.+.+..+.-++..++..++....+    ++..+.+=|+++  ++.++-.|+++|+++.. ++    
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~~--n~~ir~lALr~L~~i~~-~e----  142 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLASR--NPTFMGLALHCIANVGS-RE----  142 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHSC--CHHHHHHHHHHHHHHCC-HH----
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCCC--CHHHHHHHHHHhhccCC-HH----
Confidence            45677888999999999998888888888754321111    366777777887  99999999999999964 22    


Q ss_pred             HHhCCCHHHHHHHH--ccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008          226 IANTDILPLLIKSL--EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK  303 (858)
Q Consensus       226 i~~~g~i~~Lv~ll--~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~  303 (858)
                      +.+ ..++.+.+++  .+.++.++..|+-++.++.....  ..+...+.++.|.++|...   .+.++..|+.+|..++.
T Consensus       143 ~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~---d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          143 MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQ---HLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCS---CHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCC---CccHHHHHHHHHHHHHH
Confidence            222 3567888999  78899999999999999986432  2222247899999999643   45688899999999886


Q ss_pred             -ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhh
Q 003008          304 -DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAM  382 (858)
Q Consensus       304 -~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~l  382 (858)
                       ++..-     ...++. +++.                                     |.++...              
T Consensus       217 ~~~~~~-----~~~~~~-~~~~-------------------------------------L~~ll~~--------------  239 (621)
T 2vgl_A          217 KNPEEF-----KTSVSL-AVSR-------------------------------------LSRIVTS--------------  239 (621)
T ss_dssp             HCHHHH-----TTHHHH-HHHH-------------------------------------HHHHHHC--------------
T ss_pred             hChHHH-----HHHHHH-HHHH-------------------------------------HHHHHhC--------------
Confidence             33210     011110 2211                                     1111000              


Q ss_pred             hhhhhhhHHHHhhcccccCCCCCCCCCC-cccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC--ChhhHHHH
Q 003008          383 VGRSRQHFLVRIGAIESEDGRKPQSEFP-IDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI--NEHMRMLF  459 (858)
Q Consensus       383 i~~~~~~~L~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l  459 (858)
                                  +.            .+ ++-.+.               +.+++..|....+.|...+.  +++.+..+
T Consensus       240 ------------~~------------~~~~~~~~~---------------~~~~~w~qi~il~ll~~~~~~~d~~~~~~l  280 (621)
T 2vgl_A          240 ------------AS------------TDLQDYTYY---------------FVPAPWLSVKLLRLLQCYPPPEDPAVRGRL  280 (621)
T ss_dssp             ------------CS------------SSCSTTEET---------------TEESHHHHHHHHHHGGGSSSCSSHHHHHHH
T ss_pred             ------------CC------------CCccchhhc---------------CCCCchHHHHHHHHHHHhCCCCCHHHHHHH
Confidence                        00            00 000000               11245566666666666543  23333333


Q ss_pred             HHcCcHHHHHHhh---------cCCcH--HHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHH
Q 003008          460 KEAGAIKYLVKLL---------DHSSD--AVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLD  528 (858)
Q Consensus       460 ~~~g~i~~Lv~LL---------~~~~~--~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~  528 (858)
                      .+  .++.++..+         .+.+.  .|...|+.++..+..+++....     ++..|..++.++  +..+|..+..
T Consensus       281 ~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~-----~~~~L~~~L~~~--~~niry~aL~  351 (621)
T 2vgl_A          281 TE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR-----ACNQLGQFLQHR--ETNLRYLALE  351 (621)
T ss_dssp             HH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHSSCS--CHHHHHHHHH
T ss_pred             HH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHHhcCC--CcchHHHHHH
Confidence            32  233333222         22233  8889999999998765554332     456777888644  4899999999


Q ss_pred             HHHHhcCCCcccccccccccCcCcHHHHHhhc-CCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHH
Q 003008          529 ILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE-SLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPD  606 (858)
Q Consensus       529 ~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~-s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~  606 (858)
                      +|..+....++.   ..+  ..-...++..+. ++|+.++..++ .+..++.+....       ..+..|...+.+.+.+
T Consensus       352 ~l~~l~~~~~~~---~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~-------~Iv~eL~~yl~~~d~~  419 (621)
T 2vgl_A          352 SMCTLASSEFSH---EAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQ-------QIVAEMLSYLETADYS  419 (621)
T ss_dssp             HHHHHTTCTTTH---HHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHH-------HHHHHHHHHHHHCCHH
T ss_pred             HHHHHHhccCcH---HHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHH-------HHHHHHHHHHHhcCHH
Confidence            999998732110   011  123556777788 89999999999 888887554322       2346677788888889


Q ss_pred             HHHHHHHHHHHhhc
Q 003008          607 LQRKAASILEFITI  620 (858)
Q Consensus       607 v~~~a~~~L~~l~~  620 (858)
                      ++..++..++.++.
T Consensus       420 ~~~~~v~~I~~la~  433 (621)
T 2vgl_A          420 IREEIVLKVAILAE  433 (621)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998888888764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.90  E-value=1e-06  Score=103.03  Aligned_cols=390  Identities=15%  Similarity=0.110  Sum_probs=230.2

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHH
Q 003008          103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDL  182 (858)
Q Consensus       103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~  182 (858)
                      +....++++. +++...+.-+..++..++..+..   .++   =++..+.+=|.++++.++-.|+++|+++... +    
T Consensus        75 ~~~~vvkl~~-s~~~~~Krl~YL~l~~~~~~~~e---~~~---L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-e----  142 (621)
T 2vgl_A           75 GHMEAVNLLS-SNRYTEKQIGYLFISVLVNSNSE---LIR---LINNAIKNDLASRNPTFMGLALHCIANVGSR-E----  142 (621)
T ss_dssp             CHHHHHHGGG-CSCHHHHHHHHHHHHHSCCCCHH---HHH---HHHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-H----
T ss_pred             hHHHHHHHhc-CCCHHHHHHHHHHHHHHccCCcH---HHH---HHHHHHHHhcCCCCHHHHHHHHHHhhccCCH-H----
Confidence            3566777887 88988888888888888875543   222   2356777778899999999999999999652 2    


Q ss_pred             HHhcCcHHHHHHHh--cCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008          183 VAECGAIEEITGLL--TRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS  260 (858)
Q Consensus       183 i~~~g~i~~Lv~lL--~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~  260 (858)
                      +.+ ..++.+.+++  .+.  ++.+++.|+.++.++.....  ..+...+.++.|.++|.+.++.++..|+.+|..++..
T Consensus       143 ~~~-~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          143 MAE-AFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             HHH-HHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence            222 3578889999  776  99999999999999875321  1121258899999999988999999999999998754


Q ss_pred             cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCC
Q 003008          261 KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSL  340 (858)
Q Consensus       261 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~  340 (858)
                      +..  .+  ...++.++..|+.                  +....+.-..-...++++                      
T Consensus       218 ~~~--~~--~~~~~~~~~~L~~------------------ll~~~~~~~~~~~~~~~~----------------------  253 (621)
T 2vgl_A          218 NPE--EF--KTSVSLAVSRLSR------------------IVTSASTDLQDYTYYFVP----------------------  253 (621)
T ss_dssp             CHH--HH--TTHHHHHHHHHHH------------------HHHCCSSSCSTTEETTEE----------------------
T ss_pred             ChH--HH--HHHHHHHHHHHHH------------------HHhCCCCCccchhhcCCC----------------------
Confidence            321  11  1234445444421                  110000000000000000                      


Q ss_pred             CCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccc
Q 003008          341 PDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPW  420 (858)
Q Consensus       341 ~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~  420 (858)
                                +.+.+......|..+...+ +....+ .+..++.    +.+.....             .+.        
T Consensus       254 ----------~~w~qi~il~ll~~~~~~~-d~~~~~-~l~~~L~----~il~~~~~-------------~~k--------  296 (621)
T 2vgl_A          254 ----------APWLSVKLLRLLQCYPPPE-DPAVRG-RLTECLE----TILNKAQE-------------PPK--------  296 (621)
T ss_dssp             ----------SHHHHHHHHHHGGGSSSCS-SHHHHH-HHHHHHH----HHHHHHHS-------------CCS--------
T ss_pred             ----------CchHHHHHHHHHHHhCCCC-CHHHHH-HHHHHHH----HHHHhhcc-------------Ccc--------
Confidence                      0112222233333332111 000000 0000000    00000000             000        


Q ss_pred             cccHHHHHHHhCCCC--HHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHH
Q 003008          421 IDGVARLVLILGLED--ERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQ  498 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~--~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~  498 (858)
                      ..       .+++.+  ..+...|+.++..+...++...     .++..|..+|.++++.+|..+..+|..++.......
T Consensus       297 s~-------~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~  364 (621)
T 2vgl_A          297 SK-------KVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE  364 (621)
T ss_dssp             CS-------SHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHH
T ss_pred             cc-------cccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHH
Confidence            00       001112  2677888899888775554332     467789999998999999999999999987432122


Q ss_pred             HHHHcCChHHHHHhhc-CCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008          499 IMEAEGVVHPLVNTLK-NLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA  576 (858)
Q Consensus       499 ~l~~~g~i~~Li~lL~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L  576 (858)
                      .+  ......++..+. +++  ..++..+..+|..++.   +. +-     ...+..+...+...|.+.+..++ ++..+
T Consensus       365 ~~--~~~~~~i~~~L~~d~d--~~Ir~~aL~lL~~l~~---~~-Nv-----~~Iv~eL~~yl~~~d~~~~~~~v~~I~~l  431 (621)
T 2vgl_A          365 AV--KTHIETVINALKTERD--VSVRQRAVDLLYAMCD---RS-NA-----QQIVAEMLSYLETADYSIREEIVLKVAIL  431 (621)
T ss_dssp             HH--HTTHHHHHHHHTTCCC--HHHHHHHHHHHHHHCC---HH-HH-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhccCCC--HhHHHHHHHHHHHHcC---hh-hH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            33  235677778787 444  8899999999999987   21 11     12356677788888999888888 88877


Q ss_pred             hccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008          577 VSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI  620 (858)
Q Consensus       577 ~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~  620 (858)
                      +......     ..-.+..|+++++.....+...++..+..+..
T Consensus       432 a~k~~~~-----~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~  470 (621)
T 2vgl_A          432 AEKYAVD-----YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVI  470 (621)
T ss_dssp             HHHHCSS-----THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHG
T ss_pred             HHhcCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHHh
Confidence            6543221     01235667777765443343344444444443

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.90  E-value=3.2e-08  Score=111.84  Aligned_cols=387  Identities=11%  Similarity=0.020  Sum_probs=242.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCc-hhHHH
Q 003008          106 LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSIN-VYRDL  182 (858)
Q Consensus       106 ~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~-~~~~~  182 (858)
                      .++.-+. ++|..+|..|-..|.++...  +       ..+.+..|+.++.+.  ++.+|..|+..|+|+.... ..+..
T Consensus         5 ~~L~~~~-s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~   74 (462)
T 1ibr_B            5 TILEKTV-SPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   74 (462)
T ss_dssp             HHHHHTT-CSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHhc-CCCHHHHHHHHHHHHHHHhh--C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence            3444333 67889999998888764421  0       245667788888765  6889999999999985432 10000


Q ss_pred             --------H---HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC--CHHHHHH
Q 003008          183 --------V---AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE--NMKVKEA  249 (858)
Q Consensus       183 --------i---~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~  249 (858)
                              +   .....-..|+..+.++  ++.+ ..++.++..++..+....  .-.+.++.|++.+.++  ++.+++.
T Consensus        75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~--~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~  149 (462)
T 1ibr_B           75 QYQQRWLAIDANARREVKNYVLQTLGTE--TYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKES  149 (462)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCC--CSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred             HHHhhhhcCCHHHHHHHHHHHHHHhCCC--Cchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHH
Confidence                    0   0011234577778776  6666 778888888875431110  1146789999999988  8999999


Q ss_pred             HHHHHHHHcCCc--CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCccccccccccc
Q 003008          250 AGGVLANLALSK--SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAY  327 (858)
Q Consensus       250 a~~~L~nL~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~  327 (858)
                      ++.+|..++..-  ..-.... ...++.++..+++.. .++.+|..|+.++.++...                 ++-   
T Consensus       150 al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~-----------------~~~---  207 (462)
T 1ibr_B          150 TLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEF-----------------TKA---  207 (462)
T ss_dssp             HHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHTTT-----------------THH---
T ss_pred             HHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHH-----------------HHH---
Confidence            999999998632  1111111 135677777776531 1345777888877776521                 000   


Q ss_pred             ccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCC
Q 003008          328 KSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQS  407 (858)
Q Consensus       328 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l  407 (858)
                                                          ++  ..       .....                          
T Consensus       208 ------------------------------------~~--~~-------~~~~~--------------------------  216 (462)
T 1ibr_B          208 ------------------------------------NF--DK-------ESERH--------------------------  216 (462)
T ss_dssp             ------------------------------------HH--TS-------HHHHH--------------------------
T ss_pred             ------------------------------------hh--hh-------hHHHH--------------------------
Confidence                                                00  00       00000                          


Q ss_pred             CCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHH
Q 003008          408 EFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHA  486 (858)
Q Consensus       408 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~a  486 (858)
                                    ..++.+..++.+++++++..++++|..+. ..++.-...+..+.++.++..+++.++.++..++..
T Consensus       217 --------------~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~  282 (462)
T 1ibr_B          217 --------------FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF  282 (462)
T ss_dssp             --------------HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred             --------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence                          01233345567788899999999999854 222211111111677788888888899999999999


Q ss_pred             HHHhhcChhH-------------------HHHHH--HcCChHHHHHhhcCCC-----ccHHHHHHHHHHHHHhcCCCccc
Q 003008          487 LERLSVSRGV-------------------CQIME--AEGVVHPLVNTLKNLD-----ISESLMEKTLDILGRILDPSKEM  540 (858)
Q Consensus       487 L~~Ls~~~~~-------------------~~~l~--~~g~i~~Li~lL~~~~-----~~~~~~~~a~~~L~~l~~~~~~~  540 (858)
                      +..++.....                   ...+.  -...+|.++..+...+     ++..++..+..+|..++.   ..
T Consensus       283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~---~~  359 (462)
T 1ibr_B          283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT---CC  359 (462)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH---hc
Confidence            8888753210                   00110  0234566666665321     123578889999988876   11


Q ss_pred             ccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcccc-chhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008          541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETT-TSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFI  618 (858)
Q Consensus       541 ~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~-~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l  618 (858)
                      . + .+. ...++.+...+.+++..++..++ ++..++.... ....... ...+|.++.++.++++.++..|+++|.++
T Consensus       360 ~-~-~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~  435 (462)
T 1ibr_B          360 E-D-DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRI  435 (462)
T ss_dssp             T-T-THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             c-H-HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            1 1 111 13456666788888999999999 9998885432 1101111 46789999999999999999999999999


Q ss_pred             hcC
Q 003008          619 TII  621 (858)
Q Consensus       619 ~~~  621 (858)
                      +..
T Consensus       436 ~~~  438 (462)
T 1ibr_B          436 CEL  438 (462)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            753

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.78  E-value=2.5e-08  Score=118.28  Aligned_cols=170  Identities=17%  Similarity=0.137  Sum_probs=136.6

Q ss_pred             cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHH-HhcCCCCCHHHHHHHHHHHHHhccC--cchH
Q 003008          147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITG-LLTRPSLTSEVKEQSMCTLWNLSVD--KKHR  223 (858)
Q Consensus       147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~  223 (858)
                      .+.++++.|+++++..|..|+++|.||+.++.+|..+...|+|..++. +|.++  +.+++..|+++|.||+.+  .+.+
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~--~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN--NIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS--CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhhcCchHH
Confidence            344567889999999999999999999998889999999999988765 77777  999999999999999954  5678


Q ss_pred             HHHHhCCCHHHHHHHHccCC---------------------HHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHc
Q 003008          224 LKIANTDILPLLIKSLEDEN---------------------MKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLK  281 (858)
Q Consensus       224 ~~i~~~g~i~~Lv~ll~~~~---------------------~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~  281 (858)
                      ..+...|++++|..++++..                     .++.+.++.+|++|+... .....+...+.++.|+..|.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            88999999999999986421                     134567888999998654 44457788899999999875


Q ss_pred             cCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcc
Q 003008          282 ANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVP  318 (858)
Q Consensus       282 ~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~  318 (858)
                      +.......++..|+.+|.+++.+ +.....+.+.|...
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~  230 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETH  230 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSC
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHH
Confidence            54433456889999999999994 66677777766554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.68  E-value=3.5e-08  Score=116.99  Aligned_cols=195  Identities=14%  Similarity=0.057  Sum_probs=145.8

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHH-HhhcCCcHHHHHHHHHHHHHhhc--ChhHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLV-KLLDHSSDAVRLATTHALERLSV--SRGVCQI  499 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv-~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~  499 (858)
                      .+.+++..|++++++.|..||++|++++.+++.++.+...|+|..++ .+|.+++.+||.+|+++|+||+.  ..+.+..
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            46678899999999999999999999988999999999999998865 57889999999999999999997  5788999


Q ss_pred             HHHcCChHHHHHhhcCCCc------------c-------HHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc
Q 003008          500 MEAEGVVHPLVNTLKNLDI------------S-------ESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE  560 (858)
Q Consensus       500 l~~~g~i~~Li~lL~~~~~------------~-------~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~  560 (858)
                      +.+.|++++|..+++...+            .       ..+.+.+..+|++|+..+.+  ....+...++++.++.++.
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~--~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDE--IHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHTCHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHH--HHHHHHhcccHHHHHHHHH
Confidence            9999999999998852110            0       12334566788888763211  1224566788999998885


Q ss_pred             CCC---hhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhh--cCCCHHHHHHHHHHHHHhh
Q 003008          561 SLD---PSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIM--KTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       561 s~d---~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~~l~  619 (858)
                      +.+   .+++..++ +|+.+..+.....+.+.+.+....+..++  ...+...+..++++|.|+.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            433   57888888 99999887665546677766543322222  2233345677888888874

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.31  E-value=3.1e-05  Score=84.34  Aligned_cols=346  Identities=12%  Similarity=0.121  Sum_probs=200.2

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCc---ccHHHHHHhcC-cHHHHHH-HHccCCHHHHHHHHHHHHHhhc
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGK---KCIDYIMQFSG-CINLTVN-LLRSESSAACEAAAGLLRSISS  175 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~---~~~~~ii~~~g-~i~~Li~-lL~~~~~~~~~~a~~aL~nLs~  175 (858)
                      ...+..++++|+.....++..+.+..+..+...++   ... .++.+.. ....+.. ++..++.-....+..++..++.
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~-~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTV-KFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHH-HHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHH-HHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            45678899999867777888888888888776654   322 3322222 2222222 2333333444555555555543


Q ss_pred             Cch-hHHHHHhcCcHH--HHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCC--CHHHHHHHHcc---------
Q 003008          176 INV-YRDLVAECGAIE--EITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD--ILPLLIKSLED---------  241 (858)
Q Consensus       176 ~~~-~~~~i~~~g~i~--~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~ll~~---------  241 (858)
                      ... ..+.+-  +.+.  -++..|...+ +...+..++.+|..|...++.|..+.+.+  .++++++.++.         
T Consensus       155 ~~~~~~~~l~--~l~~~~~~~~~L~~~~-~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~  231 (480)
T 1ho8_A          155 NGLHNVKLVE--KLLKNNNLINILQNIE-QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR  231 (480)
T ss_dssp             TTTCCHHHHH--HHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             cCCccHhHHH--HHhhhHHHHHHhcccc-CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence            221 111110  0112  3445555531 44556678999999999999999988543  36777655431         


Q ss_pred             ------C--CHHHHHHHHHHHHHHcCCcCchHHHHhCCCH--HHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-h----
Q 003008          242 ------E--NMKVKEAAGGVLANLALSKSNHNILVEAGVI--PKLAMLLKANVEGSKVIRKEARNALIELAKDD-Y----  306 (858)
Q Consensus       242 ------~--~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-~----  306 (858)
                            +  ...++.+++-+++-|++.++....+...+.+  +.|+.+++...  -+++.+-++.+|.||.... .    
T Consensus       232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~--KEKvvRv~la~l~Nll~~~~~~~~~  309 (480)
T 1ho8_A          232 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI--KEKVSRLCISIILQCCSTRVKQHKK  309 (480)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred             cccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcccchhhhh
Confidence                  1  2456789999999999998877777776643  67777787642  3457889999999999843 1    


Q ss_pred             hHH-HHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhh
Q 003008          307 YRI-LIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGR  385 (858)
Q Consensus       307 ~~~-~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~  385 (858)
                      ... .++..++++  +++.+..+.++                   + ....+....|...-         +..++.+-. 
T Consensus       310 ~~~~~~~~~~~l~--~l~~L~~rk~~-------------------D-edl~edl~~L~e~L---------~~~~~~lts-  357 (480)
T 1ho8_A          310 VIKQLLLLGNALP--TVQSLSERKYS-------------------D-EELRQDISNLKEIL---------ENEYQELTS-  357 (480)
T ss_dssp             HHHHHHHHHCHHH--HHHHHHSSCCS-------------------S-HHHHHHHHHHHHHH---------HHHHHTCCH-
T ss_pred             HHHHHHHHccchH--HHHHHhhCCCC-------------------c-HHHHHHHHHHHHHH---------HHHHHhccc-
Confidence            122 333344544  55554222211                   1 11111111111000         000000000 


Q ss_pred             hhhhHH--HHhhcccccCCCCCCCCCCccccc-----ccccccc--cHHHHHHHhCC----------CCHHHHHHHHHHH
Q 003008          386 SRQHFL--VRIGAIESEDGRKPQSEFPIDRQL-----TLLPWID--GVARLVLILGL----------EDERAIARAAESI  446 (858)
Q Consensus       386 ~~~~~L--~~~~~~~~~~~~~~~l~~~~~~~~-----~~l~~~~--~i~~Lv~lL~~----------~~~~v~~~a~~aL  446 (858)
                       =.++.  +.+|..+-       .-.+.++.|     ..+...+  .++.|+.+|.+          .|+.+..-||.=+
T Consensus       358 -fDeY~~El~sG~L~W-------SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Di  429 (480)
T 1ho8_A          358 -FDEYVAELDSKLLCW-------SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDI  429 (480)
T ss_dssp             -HHHHHHHHHHTCCCC-------CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhcCCccc-------CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccH
Confidence             00000  01111000       000111111     1122222  78899999973          4788899999999


Q ss_pred             HHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008          447 ADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV  492 (858)
Q Consensus       447 ~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~  492 (858)
                      +... ..|+.|..+-+.|+-+.++.|+.+++++||.+|..|+..+-.
T Consensus       430 gefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          430 THVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9944 688889888899999999999999999999999999887653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.15  E-value=9.2e-05  Score=71.88  Aligned_cols=185  Identities=15%  Similarity=0.152  Sum_probs=139.4

Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHHh-cCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-hhHHHH
Q 003008          422 DGVARLVLILGLEDERAIARAAESIADI-SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS-RGVCQI  499 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l-~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~  499 (858)
                      +.+..|..+|.+.|+.++.++..+|..+ ..-+.......-...++.++.++++++..+.-.|..+|..|-.+ +-....
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            3678899999999999999999999994 33333333333356799999999999999999999999999772 322333


Q ss_pred             HHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhc
Q 003008          500 MEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVS  578 (858)
Q Consensus       500 l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~  578 (858)
                      +.+  .+..|.+++.+++  +..++.++..|..+.-.  ...       ...+..+.+++.|.|++++..|. ++.+++.
T Consensus       113 y~K--l~~aL~dlik~~~--~il~~eaae~Lgklkv~--~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~  179 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPD--DMMRIETIDVLSKLQPL--EDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLN  179 (265)
T ss_dssp             HHH--HHHHHHHHTTSCC--HHHHHHHHHHHHHCCBS--CCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred             HHH--HHHHHHHHhcCCC--chHHHHHHHHhCcCCcc--cch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence            333  4677888888555  88999999999998431  111       12467889999999999999999 8888875


Q ss_pred             cccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008          579 ETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID  622 (858)
Q Consensus       579 ~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~  622 (858)
                      .....  .+. .+.+.-+-.+|++.|+.++..|+.++..+...+
T Consensus       180 ~S~D~--~i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          180 SSADS--GHL-TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             GCSSC--CCG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             ccCCH--HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            44321  111 234456778899999999999999999998754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.07  E-value=4.1e-07  Score=83.41  Aligned_cols=116  Identities=15%  Similarity=0.079  Sum_probs=90.3

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA  502 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~  502 (858)
                      .++.++.+|+++++.++..|+++|+.+..           ..++.|+.+|+++++.+|..|+++|+++..          
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------   71 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------   71 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence            56778899999999999999999987653           137999999999999999999999999874          


Q ss_pred             cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHH
Q 003008          503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIE  574 (858)
Q Consensus       503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~  574 (858)
                      ...++.|+.++.+++  ..++..++++|.++..             ...++.|+.+++++|+.++..+. +|.
T Consensus        72 ~~a~~~L~~~L~d~~--~~VR~~A~~aL~~~~~-------------~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           72 ERAVEPLIKLLEDDS--GFVRSGAARSLEQIGG-------------ERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             HHHHHHHHHHHHHCC--THHHHHHHHHHHHHCS-------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc-------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            124888999998555  8899999999999875             23588999999999999998887 654

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.97  E-value=0.0001  Score=80.24  Aligned_cols=351  Identities=13%  Similarity=0.140  Sum_probs=196.9

Q ss_pred             ccHHHHHHHhC-CCCHHHHHHHHHHHHHh-cCCh---hhHHHHHHcCc-HHHHHH-hhcCCcHHHHHHHHHHHHHhhc-C
Q 003008          422 DGVARLVLILG-LEDERAIARAAESIADI-SINE---HMRMLFKEAGA-IKYLVK-LLDHSSDAVRLATTHALERLSV-S  493 (858)
Q Consensus       422 ~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l-~~~~---~~~~~l~~~g~-i~~Lv~-LL~~~~~~v~~~a~~aL~~Ls~-~  493 (858)
                      ..+..++.+|+ ..++++++.....+..+ ..++   .....+.+..- ...+.. .+..++.-....+..++..++. .
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            37888999886 56788888888877774 4444   32233333322 222333 3344445555666666666654 2


Q ss_pred             hhHHHHHHHcCChH--HHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcC--cHHHHHhhc----CC---
Q 003008          494 RGVCQIMEAEGVVH--PLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNG--SEKGLDAAE----SL---  562 (858)
Q Consensus       494 ~~~~~~l~~~g~i~--~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~--i~~Li~ll~----s~---  562 (858)
                      ....+.+..  .+.  .++..|...+ +...+..+..+|..|..   ....+..+...++  ++.++..+.    +.   
T Consensus       157 ~~~~~~l~~--l~~~~~~~~~L~~~~-~~~~~~i~v~~L~~Ll~---~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~  230 (480)
T 1ho8_A          157 LHNVKLVEK--LLKNNNLINILQNIE-QMDTCYVCIRLLQELAV---IPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT  230 (480)
T ss_dssp             TCCHHHHHH--HHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHT---SHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             CccHhHHHH--HhhhHHHHHHhcccc-CCchHHHHHHHHHHHhc---chhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence            111111110  112  3445555322 13345578888888887   5555555555443  455543222    11   


Q ss_pred             ----------ChhHHHHHH-HHHHhhccccchhhhHhhccch--hHHHHhhcC-CCHHHHHHHHHHHHHhhcCCc-chHH
Q 003008          563 ----------DPSIELTGN-VIEAAVSETTTSYGKVLDSVFI--GRMIGIMKT-SYPDLQRKAASILEFITIIDP-SMDT  627 (858)
Q Consensus       563 ----------d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i--~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~-~~~~  627 (858)
                                ....+...+ |+.-|..+.+.. ..+...+..  +.|+.+++. .-+.+.+-++.+|.|+..... ....
T Consensus       231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~-~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~  309 (480)
T 1ho8_A          231 RIVATNSNHLGIQLQYHSLLLIWLLTFNPVFA-NELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK  309 (480)
T ss_dssp             --------CCHHHHHHHHHHHHHHHTTSHHHH-HHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred             ccccccCCCccHHHHHHHHHHHHHHHcCHHHH-HHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence                      133455666 666666665544 566655533  567777764 556799999999999987652 2222


Q ss_pred             HHhh-chHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhh
Q 003008          628 IISA-DIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILK  706 (858)
Q Consensus       628 ~~~~-~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~  706 (858)
                      ++.. ...+.+-.++  ..|....|++++..+|+..+.-        .-......+-+|+++.....        ...+ 
T Consensus       310 ~~~~~~~~~~~l~~l--~~L~~rk~~Dedl~edl~~L~e--------~L~~~~~~ltsfDeY~~El~--------sG~L-  370 (480)
T 1ho8_A          310 VIKQLLLLGNALPTV--QSLSERKYSDEELRQDISNLKE--------ILENEYQELTSFDEYVAELD--------SKLL-  370 (480)
T ss_dssp             HHHHHHHHHCHHHHH--HHHHSSCCSSHHHHHHHHHHHH--------HHHHHHHTCCHHHHHHHHHH--------HTCC-
T ss_pred             HHHHHHHHccchHHH--HHHhhCCCCcHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHh--------cCCc-
Confidence            2111 1112123344  6777888877665444333210        00111223334554432111        1111 


Q ss_pred             ccCCCch--hhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhcc----------CCHHHHHHHHHHHHHhh
Q 003008          707 SNVPLHY--KDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKS----------FSSEAREAAVIELNRII  774 (858)
Q Consensus       707 ~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~----------~~~~v~~~A~~aL~nL~  774 (858)
                      .+.|.+.  +-|-+.+ .++              ..  -+...+..|+++|.+          .++.+..-||.=++.++
T Consensus       371 ~WSP~H~se~FW~ENa-~kf--------------~e--~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefv  433 (480)
T 1ho8_A          371 CWSPPHVDNGFWSDNI-DEF--------------KK--DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV  433 (480)
T ss_dssp             CCCGGGGCHHHHHHHS-GGG--------------SS--GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccchhHHHHHH-HHH--------------Hh--cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHH
Confidence            1333332  3333322 111              10  133468899999973          47888888999999998


Q ss_pred             hcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008          775 SEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL  816 (858)
Q Consensus       775 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL  816 (858)
                      ...+. ....+-+.||=..+++++.+++++||..|+.|+..+
T Consensus       434 r~~P~-gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl  474 (480)
T 1ho8_A          434 ELLPE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI  474 (480)
T ss_dssp             HHCTT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             HHCcc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            77654 555777889988889999999999999999998554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.97  E-value=0.0012  Score=78.27  Aligned_cols=314  Identities=11%  Similarity=0.003  Sum_probs=194.5

Q ss_pred             CCcHHHHHHHhcC--CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCC--------HHHHHHHHHHH
Q 003008          101 DSYVALFVQMLGL--DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSES--------SAACEAAAGLL  170 (858)
Q Consensus       101 ~g~i~~lv~lL~~--s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~--------~~~~~~a~~aL  170 (858)
                      .+++..|-+.|..  ++++.++.-|+.+|+-+..+..+         .++..|...|.+.+        +.++..|+..|
T Consensus       391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            3557777777731  45778899999999987765432         13567777787655        66787888888


Q ss_pred             HHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc-cCCHHHHHH
Q 003008          171 RSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE-DENMKVKEA  249 (858)
Q Consensus       171 ~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~  249 (858)
                      +-+.....+.      .+++.|..++...  +....+.|+.+|+-+-....+..      ++..|+..+. ..+.++++.
T Consensus       462 Gla~~GS~~e------ev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~  527 (963)
T 4ady_A          462 GLAAMGSANI------EVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRG  527 (963)
T ss_dssp             HHHSTTCCCH------HHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHH
T ss_pred             HHHhcCCCCH------HHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHH
Confidence            8875443222      2467788888876  66677788888877643333322      2355555543 347789999


Q ss_pred             HHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCccccccccccccc
Q 003008          250 AGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKS  329 (858)
Q Consensus       250 a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~  329 (858)
                      ++..|..+....+        ..++.+++.|....  .+.+|..++.++.--+....|...|      . .|+..+    
T Consensus       528 aalgLGll~~g~~--------e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aI------q-~LL~~~----  586 (963)
T 4ady_A          528 LAVGLALINYGRQ--------ELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAV------K-RLLHVA----  586 (963)
T ss_dssp             HHHHHHHHTTTCG--------GGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHH------H-HHHHHH----
T ss_pred             HHHHHHhhhCCCh--------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHH------H-HHHHHh----
Confidence            9999988865443        34677888776532  4667777777766555544443322      1 133321    


Q ss_pred             CCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCC
Q 003008          330 FRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEF  409 (858)
Q Consensus       330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~  409 (858)
                                       ....+..+++.|+.+|..+..+..                                       
T Consensus       587 -----------------~~d~~d~VRraAViaLGlI~~g~~---------------------------------------  610 (963)
T 4ady_A          587 -----------------VSDSNDDVRRAAVIALGFVLLRDY---------------------------------------  610 (963)
T ss_dssp             -----------------HHCSCHHHHHHHHHHHHHHTSSSC---------------------------------------
T ss_pred             -----------------ccCCcHHHHHHHHHHHHhhccCCH---------------------------------------
Confidence                             000111334445555554432221                                       


Q ss_pred             CcccccccccccccHHHHHH-HhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHH
Q 003008          410 PIDRQLTLLPWIDGVARLVL-ILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHAL  487 (858)
Q Consensus       410 ~~~~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL  487 (858)
                                  ..++.++. +..+.++.+|..++.+|+.++ +++.       ..++..|..++++.+..||+.|+.+|
T Consensus       611 ------------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~AL  671 (963)
T 4ady_A          611 ------------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIAL  671 (963)
T ss_dssp             ------------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHH
Confidence                        12344444 446789999999999999965 4332       23688899999999999999999999


Q ss_pred             HHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          488 ERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       488 ~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                      +.+..  +......+.  +....|.....+.+++...+--+..+.+-+..
T Consensus       672 G~Ig~gtnna~~~rva--~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a  719 (963)
T 4ady_A          672 SMILIQQTEKLNPQVA--DINKNFLSVITNKHQEGLAKFGACVAQGIMNA  719 (963)
T ss_dssp             HHHSTTCCTTTCTTHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCccccchHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence            99986  222100111  12344666666445556666666666665544

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.92  E-value=0.00041  Score=67.40  Aligned_cols=187  Identities=15%  Similarity=0.145  Sum_probs=142.8

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-h
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-Y  179 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~  179 (858)
                      .+.+..|.++|. +.|+.++.+++.+|.++-..-+...+... -...++.++.++++.++.+...|+++|..|-.+.+ .
T Consensus        32 e~~l~~L~~LL~-dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~  109 (265)
T 3b2a_A           32 KRALFLILELAG-EDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG  109 (265)
T ss_dssp             HHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred             hhHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence            457888999997 89999999999999998775333222333 36899999999999999999999999999976543 3


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008          180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL  259 (858)
Q Consensus       180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~  259 (858)
                      ...+..  .+.++..++.++  ++...++++..|..+......+      +.+..+..++.+.++.++..+.++|.|++.
T Consensus       110 ~~~y~K--l~~aL~dlik~~--~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~  179 (265)
T 3b2a_A          110 SKTFLK--AAKTLVSLLESP--DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLN  179 (265)
T ss_dssp             HHHHHH--HHHHHHHHTTSC--CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred             HHHHHH--HHHHHHHHhcCC--CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence            333332  368899999988  9999999999999995433333      235678888988899999999999999987


Q ss_pred             CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008          260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD  304 (858)
Q Consensus       260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~  304 (858)
                      ..+....+  ...+.-+-+++++.   .+.+++.|+.+|.++...
T Consensus       180 ~S~D~~i~--~~I~~eI~elL~~e---D~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          180 SSADSGHL--TLILDEIPSLLQND---NEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GCSSCCCG--GGTTTTHHHHHTCS---CHHHHHHHHHHHHHHTTS
T ss_pred             ccCCHHHH--HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHcC
Confidence            54333211  13344566678775   466999999999999876

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.90  E-value=3.3e-05  Score=70.54  Aligned_cols=88  Identities=19%  Similarity=0.194  Sum_probs=75.0

Q ss_pred             chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHH
Q 003008          747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAI  826 (858)
Q Consensus       747 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i  826 (858)
                      .++.|+.+|+++++.+|..|+++|.++...            ..++.|+++|+++++.||..|+.+|.++..        
T Consensus        43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------  102 (131)
T 1te4_A           43 AFEPLLESLSNEDWRIRGAAAWIIGNFQDE------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------  102 (131)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCSH------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence            479999999999999999999999886421            236999999999999999999999998852        


Q ss_pred             HHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008          827 IAAGAVPALRRIVLSQRPQW-TRALRLLRNL  856 (858)
Q Consensus       827 ~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l  856 (858)
                        ..+++.|..++.++++.+ ..|..+|.++
T Consensus       103 --~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A          103 --ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             --HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             --HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence              245789999999999988 8888888764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.89  E-value=7.5e-05  Score=76.17  Aligned_cols=180  Identities=12%  Similarity=0.142  Sum_probs=131.0

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhc--ChhHHHHHH
Q 003008          426 RLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSV--SRGVCQIME  501 (858)
Q Consensus       426 ~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~  501 (858)
                      .+...+.+.++..|..|+..|..+. .++.....-. ...++.|..++. +.+..|+..|+.+++.|+.  .+.....+ 
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-   96 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-   96 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence            4778889999999999999999943 3222110000 235777888894 8999999999999999996  22222222 


Q ss_pred             HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008          502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET  580 (858)
Q Consensus       502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~  580 (858)
                       ...++.|+..+.++.  ..+++.+..+|..+...   ...      ...++.+...+.+.++.++..++ .+..++...
T Consensus        97 -~~ilp~ll~~l~d~~--~~vr~~a~~aL~~~~~~---~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~  164 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKK--PNVVTALREAIDAIYAS---TSL------EAQQESIVESLSNKNPSVKSETALFIARALTRT  164 (242)
T ss_dssp             -HHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTT---SCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHc---CCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence             236889999998655  88999999999999872   111      23477788889999999999999 888765432


Q ss_pred             cch--hhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008          581 TTS--YGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI  620 (858)
Q Consensus       581 ~~~--~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~  620 (858)
                      ...  ..... ...+|.|+.++.+.+++++..|..++..+..
T Consensus       165 ~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          165 QPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            111  01112 2578999999999999999999999988864

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.89  E-value=0.00068  Score=80.47  Aligned_cols=271  Identities=11%  Similarity=0.056  Sum_probs=169.6

Q ss_pred             ccHHHHHHHhC---CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCc--------HHHHHHHHHHHHHh
Q 003008          422 DGVARLVLILG---LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSS--------DAVRLATTHALERL  490 (858)
Q Consensus       422 ~~i~~Lv~lL~---~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~--------~~v~~~a~~aL~~L  490 (858)
                      +++..|-..|.   ++++.++.-|+.+|+-+......       .++..|...|.+++        +.+|..|+..|+..
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            36777777786   67899999999999996533221       15778888886554        77899999999987


Q ss_pred             hcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc-CCChhHHHH
Q 003008          491 SVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE-SLDPSIELT  569 (858)
Q Consensus       491 s~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~-s~d~~v~~~  569 (858)
                      .....      +..+++.|..++.+.+  ..+++.++.+|+.+...+         .....+..++..+. ..+.++++.
T Consensus       465 ~~GS~------~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGT---------gn~~ai~~LL~~~~e~~~e~vrR~  527 (963)
T 4ady_A          465 AMGSA------NIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGT---------GKPEAIHDMFTYSQETQHGNITRG  527 (963)
T ss_dssp             STTCC------CHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred             hcCCC------CHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhccc---------CCHHHHHHHHHHHhccCcHHHHHH
Confidence            53111      1124677788887444  567778888888764311         11224566666543 456677777


Q ss_pred             HH-HHHHhhccccchhhhHhhccchhHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhcc
Q 003008          570 GN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMK-TSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALE  647 (858)
Q Consensus       570 a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~  647 (858)
                      ++ +|..+....+         ..++.+++.|. +.++.++..++.+++.-..+..+...+         +.|+      
T Consensus       528 aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aI---------q~LL------  583 (963)
T 4ady_A          528 LAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV---------KRLL------  583 (963)
T ss_dssp             HHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHH---------HHHH------
T ss_pred             HHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHH---------HHHH------
Confidence            76 7765543222         24577777775 678888888888887665554444433         2222      


Q ss_pred             CCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhccc
Q 003008          648 DTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCL  727 (858)
Q Consensus       648 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~  727 (858)
                                                          +....... ...+..                  ..-++..+.  
T Consensus       584 ------------------------------------~~~~~d~~-d~VRra------------------AViaLGlI~--  606 (963)
T 4ady_A          584 ------------------------------------HVAVSDSN-DDVRRA------------------AVIALGFVL--  606 (963)
T ss_dssp             ------------------------------------HHHHHCSC-HHHHHH------------------HHHHHHHHT--
T ss_pred             ------------------------------------HHhccCCc-HHHHHH------------------HHHHHHhhc--
Confidence                                                11110000 000000                  000111110  


Q ss_pred             CCCCCCCCccchhhhhhhcchHHHHHHh-ccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHH
Q 003008          728 SGPDQDFENPINMEVTLYEAIPRLIEQI-KSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV  806 (858)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~  806 (858)
                                .+    +...++.++.+| .+.++.+|..|+.||+.+..+++.        ..++..|..++.|.++.||
T Consensus       607 ----------~g----~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--------~~aid~L~~L~~D~d~~Vr  664 (963)
T 4ady_A          607 ----------LR----DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--------QSAIDVLDPLTKDPVDFVR  664 (963)
T ss_dssp             ----------SS----SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHH
T ss_pred             ----------cC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--------HHHHHHHHHHccCCCHHHH
Confidence                      00    113578888755 589999999999999988766543        1234667778889999999


Q ss_pred             HHHHHHHHhhhcC
Q 003008          807 EAGLAILYNLSMD  819 (858)
Q Consensus       807 ~~a~~aL~nL~~~  819 (858)
                      ..|+.+|..+...
T Consensus       665 q~Ai~ALG~Ig~g  677 (963)
T 4ady_A          665 QAAMIALSMILIQ  677 (963)
T ss_dssp             HHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999998654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.81  E-value=0.00013  Score=74.31  Aligned_cols=181  Identities=14%  Similarity=0.100  Sum_probs=133.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhhcCc--hhHHH
Q 003008          106 LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLR-SESSAACEAAAGLLRSISSIN--VYRDL  182 (858)
Q Consensus       106 ~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~-~~~~~~~~~a~~aL~nLs~~~--~~~~~  182 (858)
                      .+.+.+. +.++..|..++..|..+............  ...++.|...+. +.+..++..|+.+|..|+..-  .....
T Consensus        19 ~l~~~l~-s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLE-EKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHT-CSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhc-cCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3778887 89999999999999888765211100011  245778888885 889999999999999998532  22221


Q ss_pred             HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-
Q 003008          183 VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-  261 (858)
Q Consensus       183 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-  261 (858)
                      +  ...+|.+++.+.+.  ++.++..+..+|.++.......      ..++.|...+++.++.++..++..|..+.... 
T Consensus        96 ~--~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           96 A--SACVPSLLEKFKEK--KPNVVTALREAIDAIYASTSLE------AQQESIVESLSNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             H--HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             H--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            1  22589999999998  9999999999999987644321      24677888899889999999999999965432 


Q ss_pred             -C--chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008          262 -S--NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD  304 (858)
Q Consensus       262 -~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~  304 (858)
                       +  ....+  ...+|.|+.++...   .+.+|..|..++..++..
T Consensus       166 ~~~~~~~~l--~~l~p~l~~~l~D~---~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          166 PTALNKKLL--KLLTTSLVKTLNEP---DPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GGGCCHHHH--HHHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHH--HHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHH
Confidence             2  12222  25688999998643   566999999999998863

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.70  E-value=0.00073  Score=72.02  Aligned_cols=277  Identities=11%  Similarity=0.059  Sum_probs=150.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 003008          106 LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE  185 (858)
Q Consensus       106 ~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~  185 (858)
                      ..++++. ++|...|.-....+.+++...+.   .++    ++..|.+=++++++-+|-.|+++|+++...+-.+     
T Consensus        72 ~v~kl~~-s~d~~lKrLvYLyl~~~~~~~~e---~iL----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~-----  138 (355)
T 3tjz_B           72 AMTKLFQ-SNDPTLRRMCYLTIKEMSCIAED---VII----VTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ-----  138 (355)
T ss_dssp             HHHGGGG-CCCHHHHHHHHHHHHHHTTTSSC---GGG----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH-----
T ss_pred             HHHHHhc-CCCHHHHHHHHHHHHHhCCCHHH---HHH----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH-----
Confidence            3466887 88888888888888888776433   233    4677788889999999999999999997655211     


Q ss_pred             cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchH
Q 003008          186 CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHN  265 (858)
Q Consensus       186 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~  265 (858)
                       ...+.+.+.+.+.  +|.++..|+-+...|.....  . ++ .+.+..+-+++.+.++.++..|+.+|..+...+  +.
T Consensus       139 -~l~~~lk~~L~d~--~pyVRk~A~l~~~kL~~~~p--e-~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~  209 (355)
T 3tjz_B          139 -AIERYMKQAIVDK--VPSVSSSALVSSLHLLKCSF--D-VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--RL  209 (355)
T ss_dssp             -HHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTTCH--H-HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HH
T ss_pred             -HHHHHHHHHcCCC--CHHHHHHHHHHHHHHhccCH--H-HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hH
Confidence             2457778889998  99999999999999875432  2 23 368999999999999999999999999997653  21


Q ss_pred             HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcch
Q 003008          266 ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTE  345 (858)
Q Consensus       266 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~  345 (858)
                            .+..|+..+..+...++-.+-.-.+.+..++..++..   .....+. .|...                     
T Consensus       210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~-~l~~~---------------------  258 (355)
T 3tjz_B          210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFD-FIESC---------------------  258 (355)
T ss_dssp             ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CC---------------------
T ss_pred             ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHH-HHHHH---------------------
Confidence                  3455666655432223433333333333333321000   1112222 13222                     


Q ss_pred             hhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHH
Q 003008          346 IERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVA  425 (858)
Q Consensus       346 ~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~  425 (858)
                       +++.+..+.++|+.++..+...+.       ..           +                             ..++.
T Consensus       259 -L~~~~~aVvyEa~k~I~~l~~~~~-------~~-----------~-----------------------------~~a~~  290 (355)
T 3tjz_B          259 -LRNKHEMVVYEAASAIVNLPGCSA-------KE-----------L-----------------------------APAVS  290 (355)
T ss_dssp             -CCCSSHHHHHHHHHHHTC----------------------------------------------------------CCC
T ss_pred             -HcCCChHHHHHHHHHHHhccCCCH-------HH-----------H-----------------------------HHHHH
Confidence             233344678889999988743110       00           0                             00233


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHH
Q 003008          426 RLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALE  488 (858)
Q Consensus       426 ~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~  488 (858)
                      .|..+|.+++++++..|.+.|..+. ..++..     ...-.-+..++++++..+...|...|-
T Consensus       291 ~L~~fLss~d~niryvaLr~L~~l~~~~P~~v-----~~~n~~ie~li~d~n~sI~t~Aittll  349 (355)
T 3tjz_B          291 VLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV-----TACNLDLENLVTDANRSIATLAITTLL  349 (355)
T ss_dssp             THHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH-----HHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence            4566788888899999999888855 333321     124456778888888888777665553

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.49  E-value=0.0018  Score=69.04  Aligned_cols=277  Identities=10%  Similarity=0.041  Sum_probs=147.2

Q ss_pred             HHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccc
Q 003008          465 IKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKF  544 (858)
Q Consensus       465 i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  544 (858)
                      -...++++.+++..+|+-.-..+.+++..++-  .+   =++..|.+=+.+++  +.++-.|..+|+++..+.   -   
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N--~~iR~lALRtL~~I~~~~---m---  136 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKE--DSYRGPAVRALCQITDST---M---  136 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSC--HHHHHHHHHHHHHHCCTT---T---
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCc--HhHHHHHHHHHhcCCCHH---H---
Confidence            34567899999999999999999998875321  11   24566677777565  889999999999998732   1   


Q ss_pred             ccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008          545 YDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP  623 (858)
Q Consensus       545 ~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~  623 (858)
                         -....+.+.+.+.+.+|.|+..|+ +...|......    +.+ ++++.+-+++.+.++.++..|+.+|..+...+.
T Consensus       137 ---~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~  208 (355)
T 3tjz_B          137 ---LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR  208 (355)
T ss_dssp             ---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred             ---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence               112356677788899999999999 88888755432    222 688999999999999999999999998875431


Q ss_pred             chHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHH
Q 003008          624 SMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRK  703 (858)
Q Consensus       624 ~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~  703 (858)
                        ..         +..++  ..+....                                        ....-..+..++ 
T Consensus       209 --~a---------~~kLv--~~l~~~~----------------------------------------l~~~~~q~~llr-  234 (355)
T 3tjz_B          209 --LA---------VSKMI--SKFTRHG----------------------------------------LKSPFAYCMMIR-  234 (355)
T ss_dssp             --HH---------HHHHH--HHHHSSC----------------------------------------CSCHHHHHHHHH-
T ss_pred             --HH---------HHHHH--HHHhcCC----------------------------------------CcChHHHHHHHH-
Confidence              11         12222  0000000                                        000000000111 


Q ss_pred             HhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhH
Q 003008          704 ILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTR  783 (858)
Q Consensus       704 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~  783 (858)
                      ++.                .+...+       +.    ......++.+..+|++.++.|.-+|+.++..+.....     
T Consensus       235 ~l~----------------~~~~~d-------~~----~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~-----  282 (355)
T 3tjz_B          235 VAS----------------RQLEDE-------DG----SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA-----  282 (355)
T ss_dssp             HHT----------------CC----------------------------CCCCCSSHHHHHHHHHHHTC-----------
T ss_pred             HHH----------------Hhcccc-------ch----hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH-----
Confidence            100                000000       00    0012346667777889999999999999987643111     


Q ss_pred             HHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHH
Q 003008          784 AVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLL  853 (858)
Q Consensus       784 ~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l  853 (858)
                      .+ ...++.+|..+|.++++.+|-.|+..|..+....+..-.-    .-..+..++.++|... .-|...|
T Consensus       283 ~~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~----~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          283 KE-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA----CNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             ------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred             HH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH----HHHHHHHHccCCcHhHHHHHHHHh
Confidence            11 2345678888899999999999999998887654332111    2335667777777665 5554433

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.001  Score=67.93  Aligned_cols=185  Identities=12%  Similarity=0.155  Sum_probs=129.9

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH-hc-CChhhHHHHHH-cCcHHHHHHhh-cCCcHHHHHHHHHHHHHhhc--C-hhHH-H
Q 003008          427 LVLILGLEDERAIARAAESIAD-IS-INEHMRMLFKE-AGAIKYLVKLL-DHSSDAVRLATTHALERLSV--S-RGVC-Q  498 (858)
Q Consensus       427 Lv~lL~~~~~~v~~~a~~aL~~-l~-~~~~~~~~l~~-~g~i~~Lv~LL-~~~~~~v~~~a~~aL~~Ls~--~-~~~~-~  498 (858)
                      +...+.+.++.-|..|...|.. +. ++++....-.+ ...+..|...+ ++.+..++..|+.+|+.|+.  . +... .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            5567799999999999999999 75 43332100000 13477788888 78899999999999999986  2 2322 2


Q ss_pred             HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccc--cCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008          499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDI--PVNGSEKGLDAAESLDPSIELTGN-VIEA  575 (858)
Q Consensus       499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~--~~~~i~~Li~ll~s~d~~v~~~a~-~l~~  575 (858)
                      ....  .+|.++..+.+..  ..+++.+..+|..++...   . .....  -...++.++..+.+.++.++..++ .|..
T Consensus       101 y~~~--llp~ll~~l~dkk--~~V~~aa~~al~~i~~~~---~-~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~  172 (249)
T 2qk1_A          101 YVSL--VFTPLLDRTKEKK--PSVIEAIRKALLTICKYY---D-PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA  172 (249)
T ss_dssp             HHHH--HHHHHHHGGGCCC--HHHHHHHHHHHHHHHHHS---C-TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHc---c-ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            3222  5889999998554  788898888888877511   0 00010  123577888889999999999998 8887


Q ss_pred             hhccccc--h-hhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          576 AVSETTT--S-YGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       576 L~~~~~~--~-~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                      ++.....  . .........+|.|.+++.+.+++++..|..++..+.
T Consensus       173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            7754432  1 011122467899999999999999999999998875

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.0034  Score=63.97  Aligned_cols=188  Identities=15%  Similarity=0.168  Sum_probs=131.6

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHH-cccCCcccHHHHHHh-cCcHHHHHHHH-ccCCHHHHHHHHHHHHHhhcC---chhH
Q 003008          107 FVQMLGLDYDPLDREQAVEALWK-YSLGGKKCIDYIMQF-SGCINLTVNLL-RSESSAACEAAAGLLRSISSI---NVYR  180 (858)
Q Consensus       107 lv~lL~~s~d~~~~~~a~~~L~~-la~~~~~~~~~ii~~-~g~i~~Li~lL-~~~~~~~~~~a~~aL~nLs~~---~~~~  180 (858)
                      +.+.++ +.++..|..|+..|.. +..+....... -.+ ...+..|.+.+ .+.+..++..|+.+|..|+..   +...
T Consensus        21 f~~~l~-s~~w~eRk~al~~L~~~~~~~~~~i~~~-~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           21 FQERIT-SSKWKDRVEALEEFWDSVLSQTKKLKST-SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             HHHHHT-CSSHHHHHHHHHHHHHHTGGGCCCBCCT-TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             HHHHhh-cCCHHHHHHHHHHHHHHHHhcCCccccC-cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence            667777 8999999999999999 87542211000 001 24577888888 688999999999999999842   2222


Q ss_pred             -HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-chHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008          181 -DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA  258 (858)
Q Consensus       181 -~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~  258 (858)
                       ....  -.+|.+++.+.+.  .+.++..+..+|.+++.+- ..-..-.-...++.|+..|++.++.+++.++.+|..+.
T Consensus        99 ~~y~~--~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A           99 KDYVS--LVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM  174 (249)
T ss_dssp             HHHHH--HHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence             2221  1589999999987  8999999888888887422 11000001135778888999999999999999999997


Q ss_pred             CCcCch-HHH---HhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008          259 LSKSNH-NIL---VEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK  303 (858)
Q Consensus       259 ~~~~~~-~~i---~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~  303 (858)
                      ...... ..+   .....+|.|.+++...   .+.+|..|..+|..++.
T Consensus       175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~---~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDT---QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHCCSCSHHHHHHHTTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHH
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHH
Confidence            653321 221   2257789999999654   56699999999988875

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.22  E-value=0.011  Score=55.09  Aligned_cols=183  Identities=15%  Similarity=0.145  Sum_probs=132.5

Q ss_pred             ccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhc-ChhHHH
Q 003008          422 DGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSV-SRGVCQ  498 (858)
Q Consensus       422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~-~~~~~~  498 (858)
                      ..+..++.+|.++-+.++.+|...+..++. .++..     .-.+..|+.+++ ++.-..-+..+.+++.++. .|+...
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~-----epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~  106 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY-----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK  106 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH-----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence            378889999999999999999999999764 44433     234555666654 5667777888899999998 666433


Q ss_pred             HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008          499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAV  577 (858)
Q Consensus       499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~  577 (858)
                      .     .+|.|..-.+-.  ++.++.....+|..+...+++.-       .+....+.+++.|+|..-+..++ .+..+.
T Consensus       107 ~-----vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~-------~~v~rdi~smltskd~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          107 S-----MIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLM-------ASIVRDFMSMLSSKNREDKLTALNFIEAMG  172 (253)
T ss_dssp             H-----HHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred             h-----hHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHH-------HHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            3     466777666645  48899999999988876332211       23467788899988866666666 555443


Q ss_pred             ccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008          578 SETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTI  628 (858)
Q Consensus       578 ~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~  628 (858)
                      .+.. +  .+  .-.+|.|..||.+.+..++..|+.+|.+++.-++..+.+
T Consensus       173 en~~-~--yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki  218 (253)
T 2db0_A          173 ENSF-K--YV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV  218 (253)
T ss_dssp             TTTH-H--HH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             ccCc-c--cc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH
Confidence            2221 1  11  346899999999999999999999999999877765555

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.02  E-value=0.0076  Score=62.51  Aligned_cols=169  Identities=12%  Similarity=0.108  Sum_probs=120.0

Q ss_pred             HHHhhcCCcHHHHHHHHHHHHH-hhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccccc
Q 003008          468 LVKLLDHSSDAVRLATTHALER-LSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYD  546 (858)
Q Consensus       468 Lv~LL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i  546 (858)
                      ++.-|.+.+...++.+..-|.. +..+.+....++..+|+..|+.+....  +..++..+..+|.++..   .......+
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~---~v~Gm~gv  197 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLML---FVDGMLGV  197 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTT---SHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHh---ccccccch
Confidence            3344445666778888888888 566899999999999999999999855  48899999999999987   21111112


Q ss_pred             c-cCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhcc----------chhHHHHhhc---CCCHHHHHHH
Q 003008          547 I-PVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSV----------FIGRMIGIMK---TSYPDLQRKA  611 (858)
Q Consensus       547 ~-~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g----------~i~~L~~lL~---s~~~~v~~~a  611 (858)
                      + ....+.++.+++.+.+..+.+.++ .|..++...++....+.+.-          -++.|+.+|.   +.+.++|.+|
T Consensus       198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence            2 334678889999998899999999 77777655443213332221          2678999997   7899999999


Q ss_pred             HHHHHHhhcCCcc---hHHHHhhchHHHHHHHH
Q 003008          612 ASILEFITIIDPS---MDTIISADIESGLDAIF  641 (858)
Q Consensus       612 ~~~L~~l~~~~~~---~~~~~~~~~~~gl~~l~  641 (858)
                      ...+..+....+.   ...+....+..|++.++
T Consensus       278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i  310 (339)
T 3dad_A          278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALV  310 (339)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHH
Confidence            9998888766444   33554444555665555

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.97  E-value=0.23  Score=46.29  Aligned_cols=190  Identities=16%  Similarity=0.169  Sum_probs=134.1

Q ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCc
Q 003008           99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-ESSAACEAAAGLLRSISSIN  177 (858)
Q Consensus        99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~  177 (858)
                      .+...+..++.+|. ++-+.+|.+|+..+..++..-+.-    +  .-.+..|+.+++. +.-......+.+++.++...
T Consensus        29 ~d~~~l~~lI~~LD-DDlwtV~kNAl~vi~~i~~~~~el----~--epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~  101 (253)
T 2db0_A           29 YDESVLKKLIELLD-DDLWTVVKNAISIIMVIAKTREDL----Y--EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK  101 (253)
T ss_dssp             HCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCGGG----H--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHhc-cHHHHHHHhHHHHHHHHHHHhHHH----H--HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC
Confidence            46678889999997 777899999999999988754432    2  3455666667654 45555555788888888643


Q ss_pred             hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008          178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN  256 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n  256 (858)
                      +   .++ .+.+|.+..=.+-+  ++.++.....+|..+.. +|..-.     +.+.-+..++.+++..-+-.++..   
T Consensus       102 P---e~v-~~vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnF---  167 (253)
T 2db0_A          102 P---ELV-KSMIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNF---  167 (253)
T ss_dssp             H---HHH-HHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHH---
T ss_pred             H---HHH-HhhHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHH---
Confidence            2   111 13578888888888  99999999999988874 443333     345678888888875555444444   


Q ss_pred             HcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHH
Q 003008          257 LALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIE  313 (858)
Q Consensus       257 L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~  313 (858)
                      +..-.++...-+. -.+|.|..+|..+   ...++..|+.+|.|++. ++.-|..+.+
T Consensus       168 i~alGen~~~yv~-PfLprL~aLL~D~---deiVRaSaVEtL~~lA~~npklRkii~~  221 (253)
T 2db0_A          168 IEAMGENSFKYVN-PFLPRIINLLHDG---DEIVRASAVEALVHLATLNDKLRKVVIK  221 (253)
T ss_dssp             HHTCCTTTHHHHG-GGHHHHHGGGGCS---SHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhccCccccC-cchHHHHHHHcCc---chhhhHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4444455544332 4578999999765   56699999999999998 7887766543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.73  E-value=1.4  Score=54.14  Aligned_cols=108  Identities=7%  Similarity=0.011  Sum_probs=74.6

Q ss_pred             CCCcHHHHHHHhcC-CCCHHHHHHHHHHHHHcccCC-----------cccHHHHHHhcCcHHHHHHHHccCCHHHHHHHH
Q 003008          100 GDSYVALFVQMLGL-DYDPLDREQAVEALWKYSLGG-----------KKCIDYIMQFSGCINLTVNLLRSESSAACEAAA  167 (858)
Q Consensus       100 ~~g~i~~lv~lL~~-s~d~~~~~~a~~~L~~la~~~-----------~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~  167 (858)
                      ..|....|+..+.. +.+..+|..|+..|.|.....           +.. +..+     =..++..+.+++..+|..++
T Consensus        33 ~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~-k~~i-----k~~ll~~l~~~~~~ir~~l~  106 (960)
T 1wa5_C           33 QDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANN-VELI-----KKEIVPLMISLPNNLQVQIG  106 (960)
T ss_dssp             STTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHH-HHHH-----HHHHHHHHHHSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH-HHHH-----HHHHHHHHHhCCHHHHHHHH
Confidence            35677888888742 346789999999998875321           111 1223     23455555556788999999


Q ss_pred             HHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc
Q 003008          168 GLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV  218 (858)
Q Consensus       168 ~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~  218 (858)
                      .++..|+..+-..   .....++.|+++++++  ++..+..++.+|..++.
T Consensus       107 ~~ia~ia~~d~p~---~Wp~ll~~L~~~l~s~--~~~~~~~aL~~l~~i~~  152 (960)
T 1wa5_C          107 EAISSIADSDFPD---RWPTLLSDLASRLSND--DMVTNKGVLTVAHSIFK  152 (960)
T ss_dssp             HHHHHHHHHHSTT---TCTTHHHHHHTTCCSS--CTTHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHhhCcc---chhHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence            9999987643110   1245789999999887  77788889999999875

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=96.59  E-value=0.045  Score=56.76  Aligned_cols=148  Identities=11%  Similarity=0.051  Sum_probs=112.1

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHH-hhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003008          149 NLTVNLLRSESSAACEAAAGLLRS-ISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA  227 (858)
Q Consensus       149 ~~Li~lL~~~~~~~~~~a~~aL~n-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~  227 (858)
                      ..+++.|.+++...+..++.-|.. ++.+.+.-..++..+|+..|+.+....  +...+.+++++|.+|=.+...-.-++
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm~gvv  198 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccccchh
Confidence            345566667777777778888888 566678899999999999999999988  99999999999999988877765555


Q ss_pred             -hCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcC-chHHHHh--------CC--CHHHHHHHHccCCCCCHHHHHHHH
Q 003008          228 -NTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS-NHNILVE--------AG--VIPKLAMLLKANVEGSKVIRKEAR  295 (858)
Q Consensus       228 -~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~--------~g--~i~~Lv~ll~~~~~~~~~~~~~a~  295 (858)
                       ....|.-+..++.+.+..+...|+..|..++...+ +...+.+        .|  -.+.|+.+|+..+.....++.++.
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence             55678889999998889999999999999986654 3322222        12  278999999743323444666665


Q ss_pred             HHH
Q 003008          296 NAL  298 (858)
Q Consensus       296 ~aL  298 (858)
                      ..+
T Consensus       279 tLI  281 (339)
T 3dad_A          279 TLI  281 (339)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.94  E-value=0.11  Score=62.47  Aligned_cols=299  Identities=9%  Similarity=0.086  Sum_probs=169.5

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch--HHHHHh
Q 003008          151 TVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH--RLKIAN  228 (858)
Q Consensus       151 Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~  228 (858)
                      +++.+...+...+..++..+.++..++..- .....+.+..|.+.+...  ...  +.|+.++..||.....  ...-.-
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k--~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDK--KTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSH--HHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhcc--CCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            445555544444556777777775533110 011125678888888764  333  8899999999843321  111222


Q ss_pred             CCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhh
Q 003008          229 TDILPLLIKSLEDENMKVKEAAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYY  307 (858)
Q Consensus       229 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~  307 (858)
                      -+.++.++..+.+....++..|..++..+... +...  +  ...+|.|+..|.+.. ..+ .+..|+.++..|+.....
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~-kw~-~k~~~l~~~~~~~~~~~~  167 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETN-KWQ-EKIAILAAFSAMVDAAKD  167 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCC-CHH-HHHHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhcccc-chH-HHHHHHHHHHHHHHHhHH
Confidence            26789999998888888998888887777543 2211  1  345789999886542 223 567888889888864222


Q ss_pred             HHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhh
Q 003008          308 RILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSR  387 (858)
Q Consensus       308 ~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~  387 (858)
                      .-...=...+|. +.+.                      +...+..+...+..++..++.--+|                
T Consensus       168 ~~~~~~~~~~p~-~~~~----------------------~~d~k~~v~~~~~~~~~~~~~~~~n----------------  208 (986)
T 2iw3_A          168 QVALRMPELIPV-LSET----------------------MWDTKKEVKAAATAAMTKATETVDN----------------  208 (986)
T ss_dssp             HHHHHHHHHHHH-HHHH----------------------TTCSSHHHHHHHHHHHHHHGGGCCC----------------
T ss_pred             HHHHhccchhcc-hHhh----------------------cccCcHHHHHHHHHHHHHHHhcCCC----------------
Confidence            222222333442 3221                      0110112223333333222110000                


Q ss_pred             hhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHH
Q 003008          388 QHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKY  467 (858)
Q Consensus       388 ~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~  467 (858)
                                              .+      .+..+|.|+.-+.+++.  ..+|...|+....-.+...... +=.+|.
T Consensus       209 ------------------------~d------~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l-~~~~p~  255 (986)
T 2iw3_A          209 ------------------------KD------IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL-SIMVPL  255 (986)
T ss_dssp             ------------------------TT------TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH-HHHHHH
T ss_pred             ------------------------cc------hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH-HHHHHH
Confidence                                    00      13378888888887754  5556666666332211111000 123677


Q ss_pred             HHHhhcCCcHHHHHHHHHHHHHhhc---ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhc
Q 003008          468 LVKLLDHSSDAVRLATTHALERLSV---SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRIL  534 (858)
Q Consensus       468 Lv~LL~~~~~~v~~~a~~aL~~Ls~---~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~  534 (858)
                      |.+-|......++++++..+.||++   ++.....+. -..+|.+-.... .-.++++|+.+..++..|-
T Consensus       256 l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~-~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          256 LSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFA-TIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTT-TCCSHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhh-ccCCHHHHHHHHHHHHHHH
Confidence            7777888889999999999999998   333222222 345666666555 4556999998888877663

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.57  E-value=1.1  Score=54.94  Aligned_cols=195  Identities=10%  Similarity=-0.049  Sum_probs=102.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-------
Q 003008          105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN-------  177 (858)
Q Consensus       105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-------  177 (858)
                      ..++..+. +++..+|.....++..++..+-..  . .  .+.++.|+..+.+++...+..++.+|..+....       
T Consensus        88 ~~ll~~l~-~~~~~ir~~l~~~ia~ia~~d~p~--~-W--p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~  161 (960)
T 1wa5_C           88 KEIVPLMI-SLPNNLQVQIGEAISSIADSDFPD--R-W--PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSD  161 (960)
T ss_dssp             HHHHHHHH-HSCHHHHHHHHHHHHHHHHHHSTT--T-C--TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHHHHHhhCcc--c-h--hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence            34666654 445788888888888877532211  0 1  567889999998888888888999999887532       


Q ss_pred             hhHHHHH--hcCcHHHHHHH-------hcCCCCC-------HHHHHHHHHHHHHhccCcchHHHHHh--CCCHHHHHHHH
Q 003008          178 VYRDLVA--ECGAIEEITGL-------LTRPSLT-------SEVKEQSMCTLWNLSVDKKHRLKIAN--TDILPLLIKSL  239 (858)
Q Consensus       178 ~~~~~i~--~~g~i~~Lv~l-------L~~~~~~-------~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~ll  239 (858)
                      +.+..+.  -....+.++++       ++....+       ..+...++++++++...+-... +.+  ...++.+..++
T Consensus       162 ~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l  240 (960)
T 1wa5_C          162 ELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEF-FEDNIQVGMGIFHKYL  240 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHH-HHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHH-HHHHHHHHHHHHHHHH
Confidence            1222221  11224444443       4443112       1233446777777653321111 110  22234455555


Q ss_pred             ccC------C---------HHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccC--CCCCHHHHHHHHHHHHHHh
Q 003008          240 EDE------N---------MKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN--VEGSKVIRKEARNALIELA  302 (858)
Q Consensus       240 ~~~------~---------~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~~~~a~~aL~nl~  302 (858)
                      ...      +         ..++..++.+|..+.........-.-...++..++++...  ....+.+...+...+..++
T Consensus       241 ~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~  320 (960)
T 1wa5_C          241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT  320 (960)
T ss_dssp             SCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence            331      1         2466777888877764321111000112344555555421  1224456777888887777


Q ss_pred             cChh
Q 003008          303 KDDY  306 (858)
Q Consensus       303 ~~~~  306 (858)
                      ..+.
T Consensus       321 ~~~~  324 (960)
T 1wa5_C          321 RIPK  324 (960)
T ss_dssp             TSHH
T ss_pred             CcHh
Confidence            6544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=94.60  E-value=0.46  Score=48.09  Aligned_cols=177  Identities=14%  Similarity=0.052  Sum_probs=115.4

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc---ChhHHHHHH
Q 003008          426 RLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV---SRGVCQIME  501 (858)
Q Consensus       426 ~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~---~~~~~~~l~  501 (858)
                      .+...+-+.|..-+.+++..|.. +..+++......+. ..+.+.--+.+.+..+...+...|..+..   ....+-.-.
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            45566677788888899999988 44444332221111 23333322336788888888877777642   111111001


Q ss_pred             H-cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcc
Q 003008          502 A-EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSE  579 (858)
Q Consensus       502 ~-~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~  579 (858)
                      + .-.+|.|+.-+.++.  +.+|+.+..++..+..   -      ..+...++.+..-+.+.+..++..++ .+..+...
T Consensus       129 ea~~~lP~LveKlGd~k--~~vR~~~r~il~~l~~---v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEAK--DNMRTSVRDIVNVLSD---V------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             HHHHHHHHHHHGGGCSS--HHHHHHHHHHHHHHHH---H------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHH---H------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            1 125788888887544  8889988888766654   0      11122577788888999988888888 77777654


Q ss_pred             ccchhhhHhhccch---hHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          580 TTTSYGKVLDSVFI---GRMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       580 ~~~~~~~i~~~g~i---~~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                      +-..     ...++   |.+..++.++|..|+..|+.++..+.
T Consensus       198 ~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          198 AGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            4221     24578   99999999999999999999887654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=93.98  E-value=0.99  Score=46.23  Aligned_cols=183  Identities=10%  Similarity=-0.018  Sum_probs=116.1

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH-hcCChhh--HHHHH-H-cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hh--HH
Q 003008          427 LVLILGLEDERAIARAAESIAD-ISINEHM--RMLFK-E-AGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RG--VC  497 (858)
Q Consensus       427 Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~--~~~l~-~-~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~--~~  497 (858)
                      |-.-|.+.++..|..|...|.. +...+..  ..... . ...++.+...+.+.+..++..++.++..+...  ..  .+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            4577899999999999999988 4332211  11111 1 23355666788899999999999999888651  11  11


Q ss_pred             HH--HHHcCChHHHHHh-hcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HH
Q 003008          498 QI--MEAEGVVHPLVNT-LKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VI  573 (858)
Q Consensus       498 ~~--l~~~g~i~~Li~l-L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l  573 (858)
                      ..  ..-...++.|+.- +.  +....++..+..++..+....   ..     ....++.+...+.+.+|.++..++ .|
T Consensus        94 ~~~~~~~~~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~~---~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l  163 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLT--SSRATTKTQSMSCILSLCGLD---TS-----ITQSVELVIPFFEKKLPKLIAAAANCV  163 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHTS---SS-----SHHHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhc---Cc-----HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            11  1123356666653 54  334778888888776665411   00     011256677788889999999888 88


Q ss_pred             HHhhccccchh---hhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008          574 EAAVSETTTSY---GKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI  620 (858)
Q Consensus       574 ~~L~~~~~~~~---~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~  620 (858)
                      ..++...-...   .... ...++.+..++.+.++.|+..|..++..+..
T Consensus       164 ~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          164 YELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            77765532210   0011 1345678888999999999999998877753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.87  E-value=5.4  Score=48.04  Aligned_cols=294  Identities=14%  Similarity=0.091  Sum_probs=174.0

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc----hhHHH
Q 003008          107 FVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN----VYRDL  182 (858)
Q Consensus       107 lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~----~~~~~  182 (858)
                      +++-+. ..+...+..++..+.++..++...  ..+ ..+.+..|.+.+.+....  +.|+.++..|+...    ..-..
T Consensus        19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~   92 (986)
T 2iw3_A           19 LFQKLS-VATADNRHEIASEVASFLNGNIIE--HDV-PEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY   92 (986)
T ss_dssp             HHHHHT-TCCTTTHHHHHHHHHHHHTSSCSS--SSC-CHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH
T ss_pred             HHhhcc-ccchhHHHHHHHHHHHHHhccccc--ccc-chhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc
Confidence            444454 322334556666777665543221  122 246778888888766444  88999999998533    22222


Q ss_pred             HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--cCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcC
Q 003008          183 VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS--VDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLAL  259 (858)
Q Consensus       183 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs--~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~  259 (858)
                      ++  +.+|.+++.+.+.  ...++..|..++..+.  .++..-     ...+|.|+..|.+. .-..+..|+.++..|+.
T Consensus        93 ~~--~~~~~~~~~~~dk--~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~  163 (986)
T 2iw3_A           93 IV--QLVPAICTNAGNK--DKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD  163 (986)
T ss_dssp             HH--TTHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             hH--HHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            32  5688999988876  7888888877777775  334332     23589999999776 56788999999999986


Q ss_pred             CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCC
Q 003008          260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPS  339 (858)
Q Consensus       260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~  339 (858)
                      ....+....-...||.+-+.+...   -+.++..|..++..+|..=+|++.   ...++. |++.+              
T Consensus       164 ~~~~~~~~~~~~~~p~~~~~~~d~---k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~-~~~~~--------------  222 (986)
T 2iw3_A          164 AAKDQVALRMPELIPVLSETMWDT---KKEVKAAATAAMTKATETVDNKDI---ERFIPS-LIQCI--------------  222 (986)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHGGGCCCTTT---GGGHHH-HHHHH--------------
T ss_pred             HhHHHHHHhccchhcchHhhcccC---cHHHHHHHHHHHHHHHhcCCCcch---hhhHHH-HHHHh--------------
Confidence            542222222235677777777543   345888888888888863222110   112231 33321              


Q ss_pred             CCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccc
Q 003008          340 LPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLP  419 (858)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~  419 (858)
                              ...  ....+|...|...   ..=..+++.++.                                       
T Consensus       223 --------~~p--~~~~~~~~~l~~~---tfv~~v~~~~l~---------------------------------------  250 (986)
T 2iw3_A          223 --------ADP--TEVPETVHLLGAT---TFVAEVTPATLS---------------------------------------  250 (986)
T ss_dssp             --------HCT--THHHHHHHHHTTC---CCCSCCCHHHHH---------------------------------------
T ss_pred             --------cCh--hhhHHHHHHhhcC---eeEeeecchhHH---------------------------------------
Confidence                    110  1122232222221   100001111110                                       


Q ss_pred             ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC--ChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHh
Q 003008          420 WIDGVARLVLILGLEDERAIARAAESIADISI--NEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERL  490 (858)
Q Consensus       420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~L  490 (858)
                        =.+|-|..-|+.....++++++-++-|+++  ++..-..-+-...+|.|.+... ..+|++|..|..|+..|
T Consensus       251 --~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          251 --IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             --HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence              034455566777889999999999999775  3333233334667777777664 45799999998888887

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.45  E-value=2.2  Score=42.27  Aligned_cols=194  Identities=18%  Similarity=0.134  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC---------C---HHHHHHHHHHHHHhhcCchhHHHHHhc
Q 003008          119 DREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE---------S---SAACEAAAGLLRSISSINVYRDLVAEC  186 (858)
Q Consensus       119 ~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~---------~---~~~~~~a~~aL~nLs~~~~~~~~i~~~  186 (858)
                      .|++|+..|..--..-++-.-.+....|.+..|++=.-+-         +   ..-..+|...|..++.+++.|..+.++
T Consensus        17 ~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~a   96 (268)
T 2fv2_A           17 TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAA   96 (268)
T ss_dssp             THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHT
T ss_pred             hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHHc
Confidence            5888877776533322221123445678777776654221         1   122345777778889999999999999


Q ss_pred             CcHHHHHHHhcCCCCC---HHHHHHHHHHHHHhccCcc--hHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc
Q 003008          187 GAIEEITGLLTRPSLT---SEVKEQSMCTLWNLSVDKK--HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK  261 (858)
Q Consensus       187 g~i~~Lv~lL~~~~~~---~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~  261 (858)
                      +..--|..+|+..+.+   ...+-.++++++.|...++  .-..+.+...+|..++.+..|++-.+.-|..++..+-.++
T Consensus        97 ~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd  176 (268)
T 2fv2_A           97 HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD  176 (268)
T ss_dssp             TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSH
T ss_pred             cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccc
Confidence            8877777777776322   3467778899999885443  3455558889999999999999999999999999987665


Q ss_pred             CchHHHHh--------CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHc
Q 003008          262 SNHNILVE--------AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEE  314 (858)
Q Consensus       262 ~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~  314 (858)
                      .+-..+..        ..++..+|.-+...  .++.+.++..++-..|+.++..|..+...
T Consensus       177 ~GL~YiC~t~eRF~av~~vL~~mV~~l~~~--ps~RLLKhiircYlRLsdn~rar~aL~~~  235 (268)
T 2fv2_A          177 TGLAYICQTYERFSHVAMILGKMVLQLSKE--PSARLLKHVVRCYLRLSDNPRAREALRQC  235 (268)
T ss_dssp             HHHHHHTSSHHHHHHHHHHHHHHHHHTTTS--CCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             hhHHHHHccHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            44332221        12445555544322  36678899999999999999999888763

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=92.53  E-value=2  Score=43.93  Aligned_cols=185  Identities=17%  Similarity=0.088  Sum_probs=116.6

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcccCCccc--HHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc---h-h
Q 003008          107 FVQMLGLDYDPLDREQAVEALWKYSLGGKKC--IDYIMQF-SGCINLTVNLLRSESSAACEAAAGLLRSISSIN---V-Y  179 (858)
Q Consensus       107 lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~--~~~ii~~-~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~---~-~  179 (858)
                      |-+-|. +.++..|..++..|..+.......  .+..+.. ....+.+-..+.+.+..+...++.+|..++..-   . .
T Consensus        14 l~e~l~-sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLT-YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTT-CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcc-cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            557786 899999999999998765433211  0111111 234556667888889999999999998886531   1 1


Q ss_pred             HH--HHHhcCcHHHHHH-HhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008          180 RD--LVAECGAIEEITG-LLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN  256 (858)
Q Consensus       180 ~~--~i~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n  256 (858)
                      +.  ...-...+|.|++ .+.+.  .+.++..+..++..+.........     .++.++..+.+.++.++..++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            11  1222446788876 47776  888888888888776533222111     24566667788899999999999988


Q ss_pred             HcCC--cC--chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008          257 LALS--KS--NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK  303 (858)
Q Consensus       257 L~~~--~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~  303 (858)
                      +...  ..  +-...+ ..+++.+..++.+.   .+.+|..|..++..+-.
T Consensus       166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~---~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHG---DRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCS---SHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcCCchhHH-HHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHH
Confidence            7532  11  111111 12345566677553   46699999998888765

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=92.27  E-value=0.25  Score=49.52  Aligned_cols=24  Identities=4%  Similarity=-0.057  Sum_probs=17.9

Q ss_pred             chhHHHHhhcCCCHHHHHHHHHHH
Q 003008          592 FIGRMIGIMKTSYPDLQRKAASIL  615 (858)
Q Consensus       592 ~i~~L~~lL~s~~~~v~~~a~~~L  615 (858)
                      ..+.|..++.+++..|+..++..+
T Consensus       195 ~~~~L~~Ll~D~d~~VR~~aa~~l  218 (244)
T 1lrv_A          195 RGDDLLELLHDPDWTVRLAAVEHA  218 (244)
T ss_dssp             CGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHcC
Confidence            456777788888888888777764

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=91.32  E-value=0.16  Score=50.93  Aligned_cols=59  Identities=8%  Similarity=0.067  Sum_probs=31.6

Q ss_pred             HHHhhcCCChhHHHHHH-HH-----HHhhccc--cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHH
Q 003008          555 GLDAAESLDPSIELTGN-VI-----EAAVSET--TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASIL  615 (858)
Q Consensus       555 Li~ll~s~d~~v~~~a~-~l-----~~L~~~~--~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L  615 (858)
                      +..++++++++|+..+. .+     ..+..+.  ..| ..+...-+.+.|..| .+++..|+..+...|
T Consensus       175 l~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR-~~aa~~l~~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          175 LGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVR-LAAVEHASLEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             GGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHH-HHHHHHSCHHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             HHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHH-HHHHHcCCHHHHHHc-cCCCHHHHHHHHHHh
Confidence            33455556666665554 21     1122222  223 333333345677766 889999998876544

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=89.81  E-value=11  Score=38.98  Aligned_cols=131  Identities=14%  Similarity=0.002  Sum_probs=83.0

Q ss_pred             CHHHHHHHHHHHHHhhcCchhHHHHHh--cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc--ch-HHHHHhCCCHH
Q 003008          159 SSAACEAAAGLLRSISSINVYRDLVAE--CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK--KH-RLKIANTDILP  233 (858)
Q Consensus       159 ~~~~~~~a~~aL~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~--~~-~~~i~~~g~i~  233 (858)
                      .+..+.-++++++|+-.+...|..+..  ..+++.+...+.+.  +..++..++.++.|++..-  .. ....  .-.+.
T Consensus       161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~--nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~  236 (304)
T 3ebb_A          161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGS--NKNIHIALATLALNYSVCFHKDHNIEGK--AQCLS  236 (304)
T ss_dssp             CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSC--CHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHH
T ss_pred             ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHH
Confidence            566688899999999988888887765  23455555555555  8899999999999998531  11 1111  11344


Q ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHH
Q 003008          234 LLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEA  294 (858)
Q Consensus       234 ~Lv~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a  294 (858)
                      .+.+++.. .+.+....++.+|.+|.+.+.....+.+.=.+...+.-..+.+. ..++.+.+
T Consensus       237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~-~~kv~~~~  297 (304)
T 3ebb_A          237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSE-PAKVSECC  297 (304)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCS-SHHHHHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCC-chhHHHHH
Confidence            55555544 38889999999999999875544455544344444443333322 34444433

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=89.30  E-value=0.71  Score=50.86  Aligned_cols=157  Identities=18%  Similarity=0.146  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCC
Q 003008          438 AIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLD  517 (858)
Q Consensus       438 v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~  517 (858)
                      ||+.|+.+|+.+ ..-+..     ...+..|+..+..+..++|..+...|.-+.   +....  -.++++.++..|.+++
T Consensus       244 VRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~D  312 (800)
T 3oc3_A          244 VRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPD  312 (800)
T ss_dssp             HHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSS
T ss_pred             hHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcc
Confidence            888999999887 322211     456666666668888999999999988882   11111  1345777777887554


Q ss_pred             ccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC-CChhHHHHHH--HHHHhhccccchhhhHhhccchh
Q 003008          518 ISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES-LDPSIELTGN--VIEAAVSETTTSYGKVLDSVFIG  594 (858)
Q Consensus       518 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s-~d~~v~~~a~--~l~~L~~~~~~~~~~i~~~g~i~  594 (858)
                        ++++..|+.+|.-++.+  +.-       ...+..+++.|.+ +|-.......  .|..|.......   -.+...+|
T Consensus       313 --DDVRAVAAetLiPIA~p--~~l-------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVP  378 (800)
T 3oc3_A          313 --EDIKLLSAELLCHFPIT--DSL-------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLK  378 (800)
T ss_dssp             --HHHHHHHHHHHTTSCCS--STH-------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGG
T ss_pred             --cHHHHHHHHHhhhhcch--hhH-------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHH
Confidence              89999999999888731  110       1234556666655 3433333333  555555443321   12237899


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          595 RMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       595 ~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                      .|..++++.-+.|+..++.+|..+.
T Consensus       379 RL~PFLRHtITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          379 DIFPCFTSPVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             GTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred             HHHhhhcCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999988776

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=88.28  E-value=44  Score=41.01  Aligned_cols=187  Identities=14%  Similarity=0.068  Sum_probs=110.1

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCC-----cccHHHHHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGG-----KKCIDYIMQFSGCINLTVNLLRSE-----SSAACEAAAGLLR  171 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~-----~~~~~~ii~~~g~i~~Li~lL~~~-----~~~~~~~a~~aL~  171 (858)
                      ++...+..+|..+.++.+|..|+..|.+.....     ...+ ..+ +...+..+...-..+     +..++...+.++.
T Consensus        48 ~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~-~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia  125 (1049)
T 3m1i_C           48 DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHR-IGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV  125 (1049)
T ss_dssp             TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHH-HHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHH-HHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHH
Confidence            455556777754678899999999998875422     2221 233 233344443332211     3567777888888


Q ss_pred             HhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-----cc----hH-----HHHHhCCCHHHH-
Q 003008          172 SISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-----KK----HR-----LKIANTDILPLL-  235 (858)
Q Consensus       172 nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-----~~----~~-----~~i~~~g~i~~L-  235 (858)
                      .|+..+ +.    ...+.++.|+.+++ .  ++..++.++.+|..|+..     .+    .|     ..+..  -++.+ 
T Consensus       126 ~Ia~~~~p~----~Wp~ll~~L~~~~~-~--~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~--~~~~i~  196 (1049)
T 3m1i_C          126 QILKQEWPQ----NWPEFIPELIGSSS-S--SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK--EFEQIF  196 (1049)
T ss_dssp             HHHHHHTTT----TCTTHHHHHHHHHT-T--CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH--HHHHHH
T ss_pred             HHHHHhCcc----cchHHHHHHHHHHc-c--ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH--HHHHHH
Confidence            887642 11    01456889999886 4  666777778888777621     11    11     22222  14444 


Q ss_pred             ---HHHHcc-CCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008          236 ---IKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD  304 (858)
Q Consensus       236 ---v~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~  304 (858)
                         ..++.. .+..++..++.++.+...--. -..+.+...++.+.+.+-.    .+.++..|+.+|..+...
T Consensus       197 ~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~ll~~l~~~~l~----~~~~~~~a~~~L~~i~~~  264 (1049)
T 3m1i_C          197 KLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMT----SPDTRAITLKCLTEVSNL  264 (1049)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHH----SHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhhhHHHHHHHHhCC----CHhHHHHHHHHHHHHHhC
Confidence               333443 367889999999987654222 1224555666666632222    344788899999888864

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=87.55  E-value=0.9  Score=45.93  Aligned_cols=96  Identities=10%  Similarity=0.030  Sum_probs=69.6

Q ss_pred             chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHH
Q 003008          747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAI  826 (858)
Q Consensus       747 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i  826 (858)
                      .+|.|+.-+.++...+|..+-..+..+..-.++   ..     ..+.+++-+.++|.++|..++..+..+-......   
T Consensus       133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~-----v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---  201 (266)
T 2of3_A          133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LK-----MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---  201 (266)
T ss_dssp             HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HH-----HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HH-----HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---
Confidence            478888888888899999888887666543332   11     2255677778889999999999888875432221   


Q ss_pred             HHcCch---HHHHHhhhcCChhH-HHHHHHHh
Q 003008          827 IAAGAV---PALRRIVLSQRPQW-TRALRLLR  854 (858)
Q Consensus       827 ~~~g~v---~~L~~ll~~~~~~~-~~al~~l~  854 (858)
                       ...++   +.+.+++.+.|+.+ +.|+.++.
T Consensus       202 -~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lv  232 (266)
T 2of3_A          202 -PLKSLSVEKTVAPFVGDKDVNVRNAAINVLV  232 (266)
T ss_dssp             -GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred             -ccccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence             24568   89999999999988 77777654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=87.48  E-value=59  Score=39.50  Aligned_cols=194  Identities=11%  Similarity=0.073  Sum_probs=99.7

Q ss_pred             cccccHHHHHHHhCCCCH-HHHHHHHHHHH---H-hcC-----Chh--h-----HHHHHHc-------CcHHHHHHhhcC
Q 003008          419 PWIDGVARLVLILGLEDE-RAIARAAESIA---D-ISI-----NEH--M-----RMLFKEA-------GAIKYLVKLLDH  474 (858)
Q Consensus       419 ~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~---~-l~~-----~~~--~-----~~~l~~~-------g~i~~Lv~LL~~  474 (858)
                      .|.+.++.++.++++++. .......++|.   . +..     +.+  .     ++.+.+.       +....|.....+
T Consensus       125 ~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~  204 (980)
T 3ibv_A          125 NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA  204 (980)
T ss_dssp             TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred             cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc
Confidence            566778888888765433 33444445555   3 221     111  1     2233322       223333343344


Q ss_pred             CcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHH
Q 003008          475 SSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEK  554 (858)
Q Consensus       475 ~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~  554 (858)
                      .++.++..+..+|.....--. -..+.....++.+..++.  +  +.++..|+.||..+...+.+...+..+...=.+..
T Consensus       205 ~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~--~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          205 KNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQ--I--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTT--S--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcC--C--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            678888888888887776222 345555677888888886  3  68999999999998763333222222211111122


Q ss_pred             HHHhhc--CCChhHHHHHH-HHHHhh-----ccccc-------hhhhHhh--ccchhHHHHhhcCCCHHHHHHHHHHHHH
Q 003008          555 GLDAAE--SLDPSIELTGN-VIEAAV-----SETTT-------SYGKVLD--SVFIGRMIGIMKTSYPDLQRKAASILEF  617 (858)
Q Consensus       555 Li~ll~--s~d~~v~~~a~-~l~~L~-----~~~~~-------~~~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~  617 (858)
                      .+..+.  ..|.+....-+ .+..+.     .....       + .....  .+.++.++.++.+++.++-..+...+..
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~-~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~  358 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELK-ENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSD  358 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHH-HHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhh-hhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            222222  35666644333 222111     11110       0 01111  2567888888888888776655555444


Q ss_pred             h
Q 003008          618 I  618 (858)
Q Consensus       618 l  618 (858)
                      +
T Consensus       359 ~  359 (980)
T 3ibv_A          359 L  359 (980)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=87.39  E-value=6.7  Score=43.44  Aligned_cols=141  Identities=12%  Similarity=0.077  Sum_probs=88.6

Q ss_pred             cHHHHHHhhcCCcHHHHHHHHHHHHHhhc-Chh--HHHHHHHcCChHHHHHhh-c----C---CCccHHHHHHHHHHHHH
Q 003008          464 AIKYLVKLLDHSSDAVRLATTHALERLSV-SRG--VCQIMEAEGVVHPLVNTL-K----N---LDISESLMEKTLDILGR  532 (858)
Q Consensus       464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~--~~~~l~~~g~i~~Li~lL-~----~---~~~~~~~~~~a~~~L~~  532 (858)
                      ..+.|+.=|-++..++|..|+.+|+.+.+ ...  .|..-......-.|+-++ -    +   ...-..|||.++.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            46677777778899999999999999865 211  011000001122222222 1    1   11224689999999998


Q ss_pred             hcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHH
Q 003008          533 ILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKA  611 (858)
Q Consensus       533 l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a  611 (858)
                      + .   .....     ...+..++..+..+.=+++..++ .|.++ .+.- .  .  =.+.++.++.-|.+.+.+|+..|
T Consensus       255 L-~---hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DLL-~--~--Ld~Vv~aVL~GL~D~DDDVRAVA  319 (800)
T 3oc3_A          255 I-Y---PLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEFV-E--D--KDGLCRKLVSLLSSPDEDIKLLS  319 (800)
T ss_dssp             H-T---TTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGGC-C--C--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             H-H---hCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHHH-H--H--HHHHHHHHHhhcCCcccHHHHHH
Confidence            8 5   22221     23355555555666668888888 88888 2111 1  1  13557888888999999999999


Q ss_pred             HHHHHHhh
Q 003008          612 ASILEFIT  619 (858)
Q Consensus       612 ~~~L~~l~  619 (858)
                      +.+|.-++
T Consensus       320 AetLiPIA  327 (800)
T 3oc3_A          320 AELLCHFP  327 (800)
T ss_dssp             HHHHTTSC
T ss_pred             HHHhhhhc
Confidence            99999888

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=87.08  E-value=5.4  Score=39.48  Aligned_cols=144  Identities=13%  Similarity=0.062  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCc-----HHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHH
Q 003008          439 IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSS-----DAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVN  511 (858)
Q Consensus       439 ~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~-----~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~  511 (858)
                      +.+|...|..++.+++.|..+.++...-.|..+|+..+     +.+|-.+.+.++.|.+  +++....+.+.+.+|..+.
T Consensus        73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            34555555667889999999999999888888887543     5788999999999987  6788889999999999999


Q ss_pred             hhcCCCccHHHHHHHHHHHHHhcCCCccccccccccc--------CcCcHHHH-HhhcCCChhHHHHHH-HHHHhhcccc
Q 003008          512 TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP--------VNGSEKGL-DAAESLDPSIELTGN-VIEAAVSETT  581 (858)
Q Consensus       512 lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~--------~~~i~~Li-~ll~s~d~~v~~~a~-~l~~L~~~~~  581 (858)
                      .+..++  +.-|..|+-++..+..   +...-.++..        ...+...+ .+.+.+++.+.+..+ |...|+.+..
T Consensus       153 ime~Gs--elSKtvAtfIlqKIL~---dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r  227 (268)
T 2fv2_A          153 IMESGS--ELSKTVATFILQKILL---DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR  227 (268)
T ss_dssp             HHHHSC--HHHHHHHHHHHHHHHH---SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHhhcc--HHHHHHHHHHHHHHhc---cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence            998666  6667777777766554   1111111100        01111122 233456666777777 7777776666


Q ss_pred             chhhhHh
Q 003008          582 TSYGKVL  588 (858)
Q Consensus       582 ~~~~~i~  588 (858)
                      .+ +.+.
T Consensus       228 ar-~aL~  233 (268)
T 2fv2_A          228 AR-EALR  233 (268)
T ss_dssp             HH-HHHH
T ss_pred             HH-HHHH
Confidence            66 5554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=86.42  E-value=19  Score=37.30  Aligned_cols=207  Identities=12%  Similarity=0.086  Sum_probs=125.3

Q ss_pred             HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc--cccccccCcCcHHHHHhhc-CCChhHHHHHH-HH
Q 003008          498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK--SKFYDIPVNGSEKGLDAAE-SLDPSIELTGN-VI  573 (858)
Q Consensus       498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~i~~~~~i~~Li~ll~-s~d~~v~~~a~-~l  573 (858)
                      ..+.+.+.+..|+..|..-+  .+.++-+..+..++........  ...++..  --+.+.-++. .+++++...+- .|
T Consensus        72 ~ei~~~dll~~Li~~l~~L~--fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mL  147 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLID--FEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIML  147 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSC--HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCC--chhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHH
Confidence            44556788999998887444  8899999999999887322111  1111111  1112222222 13455555555 66


Q ss_pred             HHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCc
Q 003008          574 EAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDI  653 (858)
Q Consensus       574 ~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~  653 (858)
                      +.++.++... ..+...+.+-.+.+....++=+|..-|..++..+....  ....                         
T Consensus       148 Recir~e~la-~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H--k~lv-------------------------  199 (341)
T 1upk_A          148 RECIRHEPLA-KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH--KLLS-------------------------  199 (341)
T ss_dssp             HHHHTSHHHH-HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS--HHHH-------------------------
T ss_pred             HHHHHhHHHH-HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--HHHH-------------------------
Confidence            6666555554 55666666666666666666666555555554442210  0000                         


Q ss_pred             CCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCC
Q 003008          654 EGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQD  733 (858)
Q Consensus       654 ~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~  733 (858)
                                                   ..                   ++.                           
T Consensus       200 -----------------------------ae-------------------fL~---------------------------  204 (341)
T 1upk_A          200 -----------------------------AE-------------------FLE---------------------------  204 (341)
T ss_dssp             -----------------------------HH-------------------HHH---------------------------
T ss_pred             -----------------------------HH-------------------HHH---------------------------
Confidence                                         00                   000                           


Q ss_pred             CCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcch--hhHHHHhcCCchHHHHHhhcCChHHHHHHHH
Q 003008          734 FENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVD--STRAVASEGGIFPLVKLIEEGSNRAVEAGLA  811 (858)
Q Consensus       734 ~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~--~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~  811 (858)
                        ..      -......+-+||.++|.-+|.++..-|+.|..+...-  ..+++.+..-+..++.+|++++..+|.+|-.
T Consensus       205 --~n------yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFh  276 (341)
T 1upk_A          205 --QH------YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFH  276 (341)
T ss_dssp             --HT------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             --Hh------HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhh
Confidence              00      0013455667889999999999999999998775431  2236667777888999999999999999988


Q ss_pred             HHHhhhcC
Q 003008          812 ILYNLSMD  819 (858)
Q Consensus       812 aL~nL~~~  819 (858)
                      +.--...+
T Consensus       277 VFKvFVAN  284 (341)
T 1upk_A          277 VFKVFVAN  284 (341)
T ss_dssp             HHHHHHHC
T ss_pred             heeeeeeC
Confidence            87655444

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=82.37  E-value=32  Score=33.75  Aligned_cols=135  Identities=10%  Similarity=0.119  Sum_probs=88.7

Q ss_pred             cCcHHHHHHHHccC-----------CHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHH
Q 003008          145 SGCINLTVNLLRSE-----------SSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCT  212 (858)
Q Consensus       145 ~g~i~~Li~lL~~~-----------~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~  212 (858)
                      .+|+..|+..|..-           +......++.+|+.|..+......+.. .+++..++..|.++  ++.++..++..
T Consensus        42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~r~~~leL  119 (233)
T 2f31_A           42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKL  119 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT--SHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHHH
Confidence            57888888887431           334566788899988887776666666 77899999999887  99999999999


Q ss_pred             HHHhccCcc--h-HHHH----------HhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCCcCc---h----HHHHhCC
Q 003008          213 LWNLSVDKK--H-RLKI----------ANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALSKSN---H----NILVEAG  271 (858)
Q Consensus       213 L~nLs~~~~--~-~~~i----------~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~~~---~----~~i~~~g  271 (858)
                      |.-+|..++  + ...+          .+..-...+++.++.. +.+.+..++..+-.+...++.   |    ..+...|
T Consensus       120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G  199 (233)
T 2f31_A          120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG  199 (233)
T ss_dssp             HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence            988886543  3 2222          1333556678777743 556666665555555554432   2    2334444


Q ss_pred             CHHHHHHHHcc
Q 003008          272 VIPKLAMLLKA  282 (858)
Q Consensus       272 ~i~~Lv~ll~~  282 (858)
                       +..+++-++.
T Consensus       200 -l~~il~~l~~  209 (233)
T 2f31_A          200 -LHQVLQELRE  209 (233)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -hHHHHHHHhc
Confidence             5555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	858
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-07
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-14
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-14
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	7e-13
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-10
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-07
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-08
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	0.004
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	7e-05

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 2e-16
 Identities = 52/453 (11%), Positives = 129/453 (28%), Gaps = 33/453 (7%)

Query: 426 RLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATT 484
           + V  L  +DE+  A  A  I      +E  +    + G I  LV LL   +  V+ A  
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 485 HALERLSVSRGVCQ-IMEAEGVVHPLVNTLKNLDISESLM--EKTLDILGRILDPSKEMK 541
            AL  L       +     +  +   V+ L+    +E        L  L    +  +E+ 
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 542 SKFYD-------IPVNGSEKGLDAAESLDPSIELTGNVIEA--AVSETTTSYGKVLDSVF 592
           +           IP +G   G           E+  N       +S        + +   
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185

Query: 593 IGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSD 652
           +   +     +     R     +E    +  ++   + A++ +    +        T+  
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245

Query: 653 IEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLH 712
             G          +   +  +     L +   + +    +  +  I+    ++  +    
Sbjct: 246 STG------CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299

Query: 713 YKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNR 772
             +         +  +           +     + +P++   ++S +S+   +    L+ 
Sbjct: 300 TLEAC--AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357

Query: 773 IISEGVVDSTRAVASEGGIFPLVKLIEEG------SNRAVEAGLAILYNLSMDS-ENHSA 825
           +           V        + +L+         S   + +    + NL     +    
Sbjct: 358 MSR---HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414

Query: 826 IIAAGAVPALRRIVLSQRP--QWTRALRLLRNL 856
             ++  +  +  +  S         A  LL ++
Sbjct: 415 YFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (196), Expect = 2e-16
 Identities = 63/433 (14%), Positives = 137/433 (31%), Gaps = 33/433 (7%)

Query: 107 FVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAA 166
            VQ L    D   +      +       +     + Q  G I   V+LLRS +    +AA
Sbjct: 7   AVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQNVQQAA 64

Query: 167 AGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK 225
           AG LR++   +   +        I E   LL R    +E+++Q    LWNLS   + + +
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEE 123

Query: 226 IANTDILPLLI---------------KSLEDENMKVKEAAGGVLANLALSKSNHNILV-E 269
           +    +  L                  S E  + +V   A G L NL+ + +    +   
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 270 AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKS 329
           +G+I  L   ++  V  S+   K   N +  L    Y     +      +     +AY  
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 330 FRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQH 389
                                  P +    +    L  SD           +    + + 
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 390 FLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADI 449
               +  + +                 +     G+ ++  +L   +   +   A  ++++
Sbjct: 304 CAGALQNLTASK-----GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358

Query: 450 SINEHMRMLFKEAGAIKYLVKLLDHS------SDAVRLATTHALERLSV-SRGVCQIMEA 502
           S +  +  +         + +LL         S+ +  +  + +  L      + +   +
Sbjct: 359 SRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS 417

Query: 503 EGVVHPLVNTLKN 515
             +++ ++N  ++
Sbjct: 418 SSMLNNIINLCRS 430

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 2e-09
 Identities = 43/343 (12%), Positives = 96/343 (27%), Gaps = 20/343 (5%)

Query: 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVK 247
           I +    L+      + +      + +    D+  + ++     +  L+  L   N  V+
Sbjct: 4   IPKAVQYLSSQD--EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 248 EAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY 306
           +AA G L NL   S +N         I +   L      G+  I+K+    L  L+  D 
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSL--LRRTGNAEIQKQLTGLLWNLSSTDE 119

Query: 307 YRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGP--SKFGANELLLG 364
            +  +I + L  +       +  +     +        E+   + G   +   A+     
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 365 LNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGV 424
           +       +   A +   V  SR         +        + +  +  +   L +    
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239

Query: 425 AR-----LVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAV 479
           A              D+         + +   N         + AI+  + L+  S    
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299

Query: 480 RLATTHALERLSVSRGVCQIMEA-------EGVVHPLVNTLKN 515
            L       +   +                E  +  +   L++
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 4/112 (3%)

Query: 748 IPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE 807
           IP+ ++ + S   + +      + +        + + V   GGI  LV L+   +    +
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYI-QHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 808 AGLAILYNLSMDS-ENHSAIIAAGAVPALRRIVLSQRPQWTR--ALRLLRNL 856
           A    L NL   S  N         +     ++        +     LL NL
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL 114

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 11/174 (6%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQF----SGCINLTVNLLRSES 159
           +  ++ ++G        E    AL   +         + Q        +     LL+S +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 160 SAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLT----RPSLTSEVKEQSMCTLWN 215
           S    + A LL ++S   +   ++       E+T LLT      S + ++   +  T+ N
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRN 403

Query: 216 LSV-DKKHRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNIL 267
           L     +   +  ++ +L  +I       + K  EAA  +L+++  SK    +L
Sbjct: 404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 231 ILPLLIKSLEDENMKVKEAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKV 289
            +P  ++ L  ++ K +      + +     +S    + + G I KL  LL+     ++ 
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR---SPNQN 59

Query: 290 IRKEARNALIELA-KDDYYRILIIEEGLVPVPM 321
           +++ A  AL  L  +    ++    +  +   +
Sbjct: 60  VQQAAAGALRNLVFRSTTNKLETRRQNGIREAV 92

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 2e-14
 Identities = 65/435 (14%), Positives = 135/435 (31%), Gaps = 14/435 (3%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +   V+MLG          A+  L    L  +     +   +G +   V LL   +    
Sbjct: 103 IPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFL 160

Query: 164 EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR 223
                 L+ ++  N    L+       +    + R     ++   +   L  LSV   ++
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220

Query: 224 LKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN 283
             I     +  L   L D + ++ +     L NL+ + +    +           L++  
Sbjct: 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLG-----TLVQLL 275

Query: 284 VEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDG 343
                 +   A   L  L  ++Y   +++ +      +V        R ++         
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335

Query: 344 TEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGR 403
               R  +      A  L  GL V  K  +                 L    A  +    
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395

Query: 404 KPQSEFPID-----RQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRML 458
           +      +       Q T      G  +   + G+  E  +     ++  ++ + H R++
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 455

Query: 459 FKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI 518
            +    I   V+LL    + ++      L  L+  +   + +EAEG   PL   L + + 
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN- 514

Query: 519 SESLMEKTLDILGRI 533
            E +      +L R+
Sbjct: 515 -EGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 2e-14
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 26/199 (13%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           + + V++L         +  V  +   +L         ++  G I   V LL        
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQ 414

Query: 164 EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR 223
              +        +   R                       E+ E     L  L+ D  +R
Sbjct: 415 RRTSMGGTQQQFVEGVRM---------------------EEIVEGCTGALHILARDVHNR 453

Query: 224 LKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN 283
           + I   + +PL ++ L      ++  A GVL  LA  K     +   G    L  LL   
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-- 511

Query: 284 VEGSKVIRKEARNALIELA 302
              ++ +   A   L  ++
Sbjct: 512 -SRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (167), Expect = 9e-13
 Identities = 74/555 (13%), Positives = 163/555 (29%), Gaps = 36/555 (6%)

Query: 176 INVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANT-DILPL 234
           IN   D      AI E+T LL        V  ++   +  LS  +  R  I  +  ++  
Sbjct: 6   INYQDDAELATRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 63

Query: 235 LIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKE 293
           +++++++  +++      G L NL+  +     + ++G IP L  +L         +   
Sbjct: 64  IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG---SPVDSVLFY 120

Query: 294 ARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGP 353
           A   L  L        + +        MV      + +    +   L       + S+  
Sbjct: 121 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK-- 178

Query: 354 SKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDR 413
                        +    +   +A +N M   + +  L     +         ++  I  
Sbjct: 179 -------------LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 225

Query: 414 QLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD 473
              +               L D              ++++         G +  LV+LL 
Sbjct: 226 AGGMQALGL---------HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG 276

Query: 474 HSSDAVRLATTHAL-ERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGR 532
                V       L      +     ++   G +  LV T+      E + E  +  L  
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 533 ILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSV- 591
           +    +E +     + ++     +           L    +    +              
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQ 396

Query: 592 -FIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTD 650
             I R++ ++  ++ D QR+ +        ++      I       L  + +        
Sbjct: 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 456

Query: 651 SDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVP 710
             +         L     ++   A A +L +L   K+  + I +      L ++L S   
Sbjct: 457 RGLNTIPLFVQLLYSPIENIQRVA-AGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNE 515

Query: 711 LHYKDWVAACLVKLS 725
                + AA L ++S
Sbjct: 516 -GVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (159), Expect = 8e-12
 Identities = 65/480 (13%), Positives = 147/480 (30%), Gaps = 55/480 (11%)

Query: 422 DGVARLVLILGLEDERAIAR-AAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVR 480
             V+ +V  +   ++   AR  A ++ ++S +    +   ++G I  LVK+L    D+V 
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 481 LATTHALERLSVSRGVCQIMEAE-GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539
                 L  L + +   ++     G +  +V  L     +   +  T D L  +   ++E
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQE 176

Query: 540 MKSKFYDIPVNGSEKGLDAAESLDPSIELTGNV--IEAAVSETTTSYGKVLDSVFIGRMI 597
            K          +   +    + +  +  T  V  + +  S    +  +      +G  +
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 598 GIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIE--------------------SGL 637
                            L         M+ ++   ++                    +  
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296

Query: 638 DAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHF 697
           +   +    +    +   R   +     +    AI A   L ++  +++     +   + 
Sbjct: 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356

Query: 698 IKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKS 757
           + ++ K+L               +  L+             +  +    AIPRL++ +  
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLAL--------CPANHAPLREQGAIPRLVQLLVR 408

Query: 758 FSSEA-REAAVIELNRIISEGV-------------------VDSTRAVASEGGIFPLVKL 797
              +  R  ++    +   EGV                   V +   +     I   V+L
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 468

Query: 798 IEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
           +             +L  L+ D E   AI A GA   L  ++ S+     T A  +L  +
Sbjct: 469 LYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 1e-10
 Identities = 63/477 (13%), Positives = 139/477 (29%), Gaps = 52/477 (10%)

Query: 424 VARLVLILGLEDERAIARAAESIADISINEHMRM-LFKEAGAIKYLVKLLDHSSDA-VRL 481
           +  L  +L  ED+  + +AA  +  +S  E  R  + +    +  +V+ + +++D     
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78

Query: 482 ATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK 541
            T   L  LS  R     +   G +  LV  L +    +S++   +  L  +     +  
Sbjct: 79  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNL--LLHQEG 134

Query: 542 SKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKV-LDSVFIGRMIGIM 600
           +K       G +K +      +             ++        + L S     ++ IM
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 601 KTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDA--------------IFQQKAL 646
           +T   +      S +  +  +  S    I                        ++  + L
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 647 EDTDSDIEGRQPEKYAL----DIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLR 702
            D  +  EG +     L      ++ ++   A   L     ++ +    +     I+ L 
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314

Query: 703 KILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEA 762
           + +            A C ++       + +              + +L+     +    
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374

Query: 763 REAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRA----------------- 805
               +I    +           +  +G I  LV+L+                        
Sbjct: 375 ATVGLIRNLALCPANH----APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430

Query: 806 -----VEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
                VE     L+ L+ D  N   I     +P   +++ S        A  +L  L
Sbjct: 431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 2e-10
 Identities = 57/453 (12%), Positives = 129/453 (28%), Gaps = 49/453 (10%)

Query: 108 VQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC-EAA 166
            ++L  D D +   +A   + + S   +     IM+    ++  V  +++ +        
Sbjct: 23  TKLLN-DEDQVVVNKAAVMVHQLS-KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 80

Query: 167 AGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLK 225
           AG L ++S        + + G I  +  +L  P     V   ++ TL NL +  +  ++ 
Sbjct: 81  AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMA 138

Query: 226 IANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNIL-VEAGVIPKLAMLLKANV 284
           +     L  ++  L   N+K        L  LA       ++ + +G    L  +++   
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 285 EGSKVIRKEARNALIELAK------------DDYYRILIIEEGLVPVPMVGADAYKSFRP 332
               +        ++ +                    L      +    +      S   
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258

Query: 333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLV 392
                     GT ++               +  N++  N              +    ++
Sbjct: 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 393 RIGAIESEDGRKPQSEFPIDRQLTLLPWI-------DGVARLVLILGLEDERAIAR-AAE 444
           R G  E        +   +  +               G+  +V +L       + +    
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378

Query: 445 SIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRL----------------------A 482
            I ++++        +E GAI  LV+LL  +    +                        
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438

Query: 483 TTHALERLSVSRGVCQIMEAEGVVHPLVNTLKN 515
            T AL  L+       ++     +   V  L +
Sbjct: 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYS 471

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 6e-08
 Identities = 58/358 (16%), Positives = 127/358 (35%), Gaps = 15/358 (4%)

Query: 141 IMQFSGCINLTVNLLRSESSAAC-EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRP 199
           I+  SG     VN++R+ +        + +L+ +S  +  +  + E G ++ +   LT P
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239

Query: 200 SLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259
             +  + +  + TL NLS     +  +         ++ L  +++ V   A G+L+NL  
Sbjct: 240 --SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL--VQLLGSDDINVVTCAAGILSNLTC 295

Query: 260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRI----LIIEEG 315
           +   + ++V      +  +         + I + A  AL  L             +    
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355

Query: 316 LVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANID 375
            +PV +        +     +   + +            + GA   L+ L V        
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ---- 411

Query: 376 EAKMNAMVGRSRQHFL--VRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGL 433
           + +    +G ++Q F+  VR+  I                   ++  ++ +   V +L  
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS 471

Query: 434 EDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLS 491
             E     AA  + +++ ++      +  GA   L +LL   ++ V       L R+S
Sbjct: 472 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 7e-08
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 746 EAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRA 805
            AIP L + +          A + ++++ S+        + S   +  +V+ ++  ++  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75

Query: 806 V-EAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTR-ALRLLRN 855
                   L+NLS   E   AI  +G +PAL +++ S        A+  L N
Sbjct: 76  TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 4/133 (3%)

Query: 686 KQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLY 745
            +  Q +   H     R+         + + V    +   C         +  N  V   
Sbjct: 400 PRLVQLLVRAH-QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG 458

Query: 746 E-AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNR 804
              IP  ++ + S     +  A   L  +  +   ++  A+ +EG   PL +L+   +  
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--EAAEAIEAEGATAPLTELLHSRNEG 516

Query: 805 AVEAGLAILYNLS 817
                 A+L+ +S
Sbjct: 517 VATYAAAVLFRMS 529

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.4 bits (168), Expect = 7e-13
 Identities = 63/421 (14%), Positives = 126/421 (29%), Gaps = 38/421 (9%)

Query: 145 SGCINLTVNLLRSESSAACEAAAGLLRSISSI--NVYRDLVAECGAIEEITGLLTRPSLT 202
           +  +   V  + S +  +   A    R + S       D +   G I +    L +    
Sbjct: 12  NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-C 70

Query: 203 SEVKEQSMCTLWNL-SVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK 261
           S ++ +S   L N+ S   +    + +   +P  I  L   +  + E A   L N+A   
Sbjct: 71  SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130

Query: 262 SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK----DDYYRILIIEEGLV 317
           S    LV         + L A  + S +     RN    L+      +    L   E ++
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190

Query: 318 PVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEA 377
           P  +               W             +   K G    L+ L  + +   +  A
Sbjct: 191 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250

Query: 378 -----------KMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPW------ 420
                                    V    + +      +        +T          
Sbjct: 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 310

Query: 421 --IDGVARLVLILGLEDERAIARAAESIADISI--NEHMRMLFKEAGAIKYLVKLLDHSS 476
                V  LV +L   D +    AA +I + +        +     G I+ L+ LL    
Sbjct: 311 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 370

Query: 477 DAVRLATTHAL-------ERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDI 529
             +      A+       E+L  +  +  ++E  G +  +    ++ +  ES+ + +L++
Sbjct: 371 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN--ESVYKASLNL 428

Query: 530 L 530
           +
Sbjct: 429 I 429

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.4 bits (147), Expect = 2e-10
 Identities = 74/396 (18%), Positives = 144/396 (36%), Gaps = 32/396 (8%)

Query: 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC 163
           +  FV  LG       + ++  AL   + G  +    ++   G I   ++LL S  +   
Sbjct: 58  IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPHAHIS 116

Query: 164 EAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222
           E A   L +I+     +RDLV + GAI+ +  LL  P L++          W LS   ++
Sbjct: 117 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 176

Query: 223 RLK----IANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAM 278
           +       A   ILP L++ L   + +V   +   ++ L    +    +V    +    +
Sbjct: 177 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQ-L 235

Query: 279 LLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWP 338
           +         ++    R     +   D     +I+ G + V        K+   +  +W 
Sbjct: 236 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 295

Query: 339 SLPDGTEIERTSQGPSKFGANELLLGLNVS---DKNANIDEAKMNAMVGRSRQH--FLVR 393
                   +   Q     G    L+G+              A  N   G + +   +LV 
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355

Query: 394 IGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINE 453
            G IE                + LL   D     V++  + +   I +AAE + +    E
Sbjct: 356 CGIIEP--------------LMNLLSAKDTKIIQVILDAISN---IFQAAEKLGE---TE 395

Query: 454 HMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALER 489
            + ++ +E G +  +  L  H +++V  A+ + +E+
Sbjct: 396 KLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 734 FENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFP 793
             +  + + T+  ++  +++ I S + E++  A     +++S         +   G I  
Sbjct: 1   MADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 60

Query: 794 LVKLIEEGSNRAV-EAGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQ 842
            V  + +     +       L N+ S  SE   A++  GA+PA   ++ S 
Sbjct: 61  FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 111

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 52/444 (11%), Positives = 122/444 (27%), Gaps = 39/444 (8%)

Query: 424 VARLVLILGLEDERAIARAAESIADISINEH--MRMLFKEAGAIKYLVKLLDHSSDA-VR 480
           V  +V  +   +  +  +A ++   +   E          AG I   V  L  +  + ++
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 481 LATTHALERL-SVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539
             +  AL  + S +    + +   G +   ++ L +      + E+ +  LG I      
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH--ISEQAVWALGNIAGDGSA 132

Query: 540 MKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGI 599
            +     I     +  L      D S    G +     + +     K         +  I
Sbjct: 133 FRDLV--IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-AVEQI 189

Query: 600 MKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPE 659
           + T    L      +L         +    +  IE  +      + ++   +        
Sbjct: 190 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 249

Query: 660 KYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAA 719
                    +                    +          L                 A
Sbjct: 250 ALRAIGNIVT-----------------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 292

Query: 720 CLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVV 779
                +  +G     +  +N  +     +P L+  +     + ++ A   +    S G V
Sbjct: 293 TWTMSNITAGRQDQIQQVVNHGL-----VPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 347

Query: 780 DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHS-------AIIAAGAV 832
           +    +   G I PL+ L+     + ++  L  + N+   +E           I   G +
Sbjct: 348 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 407

Query: 833 PALRRIVLSQRPQ-WTRALRLLRN 855
             +  +   +    +  +L L+  
Sbjct: 408 DKIEALQRHENESVYKASLNLIEK 431

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.9 bits (133), Expect = 1e-08
 Identities = 66/421 (15%), Positives = 143/421 (33%), Gaps = 43/421 (10%)

Query: 107 FVQMLGLDYDPLDREQAVEALWKY-SLGGKKCIDYIMQFSGCINLTVNLLRSESSAAC-E 164
             Q L  D D  ++  A     +  S   +  ID ++Q +G +   V  +R         
Sbjct: 81  MTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQ-AGVVPRLVEFMRENQPEMLQL 138

Query: 165 AAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKH 222
            AA  L +I+S       +V +  A+     LL   S   EVKEQ++  L N++     +
Sbjct: 139 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS--VEVKEQAIWALGNVAGDSTDY 196

Query: 223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLK 281
           R  +   + +  ++         +   A   L+NL   K    +  V +  +P LA L+ 
Sbjct: 197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 256

Query: 282 ANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLP 341
           +    + V    A + L +  ++    ++ +      V ++  ++     P L +  ++ 
Sbjct: 257 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 316

Query: 342 DGTEIERTSQGPSKFGANELLLGLNVSD--KNANIDEAKMNAMVGRSRQHFLVRIGAIES 399
            G +++      +       LL  +  +  K                +   ++    I  
Sbjct: 317 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 376

Query: 400 EDGRKPQSEFPIDR------------------QLTLLPWIDGVARLVLILGLEDERAIAR 441
                  +E+   +                   +  L     +  L  +L + D R I  
Sbjct: 377 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 436

Query: 442 AAESIADI-------------SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALE 488
             +++ +I             +INE+     ++AG ++ +     + +D +       +E
Sbjct: 437 TLDALENILKMGEADKEARGLNINENADF-IEKAGGMEKIFNCQQNENDKIYEKAYKIIE 495

Query: 489 R 489
            
Sbjct: 496 T 496

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 99  FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQF--SGCINLTVNLLR 156
             D+ +   +  L    +   +++A  A+   S GG +  D I      GCI    +LL 
Sbjct: 368 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 427

Query: 157 SESSAACEAAAGLLRSI------------SSINVYRDLVAECGAIEEITGLLTRPSLTSE 204
              +   E     L +I             +IN   D + + G +E+I       +   +
Sbjct: 428 IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN--DK 485

Query: 205 VKEQS 209
           + E++
Sbjct: 486 IYEKA 490

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 49/338 (14%), Positives = 112/338 (33%), Gaps = 16/338 (4%)

Query: 204 EVKEQSMCTLWNLSVDKKHRLKIANTD-ILPLLIKSLEDENMKVKEAAGGVLANLALSKS 262
            V+  +  TL   +     +        ++  L+K + D N +V+EAA    A L     
Sbjct: 451 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 510

Query: 263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK---DDYYRILIIEEGLVPV 319
              +   A ++  L          + +I  +A   L +      +    I ++   L+  
Sbjct: 511 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 570

Query: 320 PMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM 379
             +  D  K   P L    S+    +          +     +  +  +   A ++ A+ 
Sbjct: 571 WNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVY--QRCVNLVQKTLAQAMLNNAQP 628

Query: 380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAI 439
           +      +   +V +  +         +   +  +  +L         ++   ++D+   
Sbjct: 629 DQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT--------LMYQCMQDKMPE 680

Query: 440 ARAAESIADISINEHMRMLFKEAGA--IKYLVKLLDHSSDAVRLATTHALERLSVSRGVC 497
            R +       + +      K   A  +  L   L+    +V    T A+  +S+  G+ 
Sbjct: 681 VRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE 740

Query: 498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535
                  V+H LV  +   +  ++L+E T   +GR+  
Sbjct: 741 MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 778

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	858
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.96
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.96
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.69
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.66
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.64
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.58
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.3
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.2
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.07
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.96
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.95
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.94
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.94
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.73
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.55
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.54
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.5
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.38
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.28
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.15
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.02
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.91
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.86
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.78
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.1
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.27
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	89.0

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-38  Score=366.58  Aligned_cols=505  Identities=16%  Similarity=0.159  Sum_probs=387.5

Q ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCc
Q 003008           99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-ESSAACEAAAGLLRSISSIN  177 (858)
Q Consensus        99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~  177 (858)
                      ...+++|.|+++|+ +.|..++..|+.+|.+++.++... ..++...|+++.|+.+|++ ++++.++.|+++|.+|+.++
T Consensus        14 ~~~~aip~L~~lL~-~~~~~v~~~A~~~l~~l~~~~~~~-~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (529)
T d1jdha_          14 LATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             ---CHHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccHHH-HHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc
Confidence            45789999999998 899999999999999999876654 4566556789999999976 57889999999999999999


Q ss_pred             hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc-hHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008          178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK-HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN  256 (858)
Q Consensus       178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n  256 (858)
                      +++..+.+.|++|.|+.+|+++  ++.++..|+++|+|++.+.+ .+..+.+.|+++.|+++|++++++++..++++|.+
T Consensus        92 ~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  169 (529)
T d1jdha_          92 EGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  169 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHCCCHHHHHHHhCCC--CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHH
Confidence            9999999999999999999998  99999999999999996654 57788899999999999999999999999999999


Q ss_pred             HcCCc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCC
Q 003008          257 LALSK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELH  335 (858)
Q Consensus       257 L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~  335 (858)
                      ++..+ ..+..+.+.|+++.|+.++++.+  .+.+++.+..++.+++.+++++..+++.|+++ +|+.++          
T Consensus       170 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~-~L~~ll----------  236 (529)
T d1jdha_         170 LAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHL----------  236 (529)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHH-HHHTTT----------
T ss_pred             HhhhhhHHHHHHHhcccchHHHHHHHhhh--hHHHHHHHHHHHhhhhccccccchhhhhhhhh-hHHHHh----------
Confidence            99764 55667889999999999997754  34588899999999999999999999999999 598864          


Q ss_pred             CCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc
Q 003008          336 SWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL  415 (858)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~  415 (858)
                                  ...+...+..++++|.+++....                                             
T Consensus       237 ------------~~~~~~~~~~a~~~l~~ls~~~~---------------------------------------------  259 (529)
T d1jdha_         237 ------------TDPSQRLVQNCLWTLRNLSDAAT---------------------------------------------  259 (529)
T ss_dssp             ------------TSSCHHHHHHHHHHHHHHHTTCT---------------------------------------------
T ss_pred             ------------cccchhhhhhhhhHHHhcccccc---------------------------------------------
Confidence                        11222455668888888753221                                             


Q ss_pred             ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhc--CCcHHHHHHHHHHHHHhhc
Q 003008          416 TLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLD--HSSDAVRLATTHALERLSV  492 (858)
Q Consensus       416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~--~~~~~v~~~a~~aL~~Ls~  492 (858)
                      ......++++.|+.++.+++..++..++++|++++ .+++++..+.+.|+++.|+.++.  +++++++..++++|++|+.
T Consensus       260 ~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         260 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence            11122457899999999999999999999999965 67888899999999999999884  4568999999999999997


Q ss_pred             C----hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHH
Q 003008          493 S----RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIEL  568 (858)
Q Consensus       493 ~----~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~  568 (858)
                      .    ...+..+...|+++.|+.++..+ .+..++..+.++|++++.   ....+..+                      
T Consensus       340 ~~~~~~~~~~~i~~~~~l~~L~~ll~~~-~~~~~~~~~~~~l~~l~~---~~~~~~~l----------------------  393 (529)
T d1jdha_         340 RHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLAL---CPANHAPL----------------------  393 (529)
T ss_dssp             SSTTHHHHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHTT---SGGGHHHH----------------------
T ss_pred             hhhcchhhhhhHHhcccchhHHHHHhcc-chHHHHHHHHHHHhhcch---hhhhhhhh----------------------
Confidence            3    23466788899999999999854 345677788999999987   33333233                      


Q ss_pred             HHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch-HHHHhhchHHHHHHHHHhhhcc
Q 003008          569 TGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSM-DTIISADIESGLDAIFQQKALE  647 (858)
Q Consensus       569 ~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~gl~~l~~~~iL~  647 (858)
                                         .+.|+++.|+++|.+.+..++..+.............. ..+            +      
T Consensus       394 -------------------~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~------  436 (529)
T d1jdha_         394 -------------------REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI------------V------  436 (529)
T ss_dssp             -------------------HHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHH------------H------
T ss_pred             -------------------hhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHH------------H------
Confidence                               34555666666665555555444443322221111000 000            0      


Q ss_pred             CCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhccc
Q 003008          648 DTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCL  727 (858)
Q Consensus       648 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~  727 (858)
                                               ....+.+..+.   ..                                       
T Consensus       437 -------------------------~~~~~al~~la---~~---------------------------------------  449 (529)
T d1jdha_         437 -------------------------EGCTGALHILA---RD---------------------------------------  449 (529)
T ss_dssp             -------------------------HHHHHHHHHHT---TS---------------------------------------
T ss_pred             -------------------------HHHHHHHHHHc---cC---------------------------------------
Confidence                                     00000000000   00                                       


Q ss_pred             CCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHH
Q 003008          728 SGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE  807 (858)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~  807 (858)
                              ...+..+...|++++|+++|.++++++|..|+.+|++|...  .+.++.+.+.|++++|+++++++++.+|+
T Consensus       450 --------~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~  519 (529)
T d1jdha_         450 --------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVAT  519 (529)
T ss_dssp             --------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCSSHHHHH
T ss_pred             --------HHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHCCCHHHHHHHhCCCCHHHHH
Confidence                    00001123567899999999999999999999999999754  34677999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 003008          808 AGLAILYNLS  817 (858)
Q Consensus       808 ~a~~aL~nL~  817 (858)
                      .|+.+|++|+
T Consensus       520 ~a~~aL~~ls  529 (529)
T d1jdha_         520 YAAAVLFRMS  529 (529)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999985

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=358.52  Aligned_cols=507  Identities=18%  Similarity=0.134  Sum_probs=388.9

Q ss_pred             hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch
Q 003008          144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH  222 (858)
Q Consensus       144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~  222 (858)
                      ..+.+|.|+++|++++..++..|+.+|.+|+.++..+..+.. .|+++.|+.+|+... ++++++.++.+|++|+.++++
T Consensus        15 ~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~   93 (529)
T d1jdha_          15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchh
Confidence            479999999999999999999999999999998888887776 578999999997653 789999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcC-chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008          223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS-NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIEL  301 (858)
Q Consensus       223 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl  301 (858)
                      +..+++.|+++.|+++|++++++++..|+++|.|++.+.+ .+..+.+.|+++.|+.+|+++   ++.++..++.+|.++
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l  170 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQIL  170 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc---ChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998755 556788999999999999875   456899999999999


Q ss_pred             hc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHh
Q 003008          302 AK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMN  380 (858)
Q Consensus       302 ~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~  380 (858)
                      +. ++.++..+.+.|+++ +|+.++.                     .......+..+++++++++.++.++        
T Consensus       171 ~~~~~~~~~~~~~~~~~~-~L~~ll~---------------------~~~~~~~~~~~~~~l~~ls~~~~~~--------  220 (529)
T d1jdha_         171 AYGNQESKLIILASGGPQ-ALVNIMR---------------------TYTYEKLLWTTSRVLKVLSVCSSNK--------  220 (529)
T ss_dssp             HTTCHHHHHHHHHTTHHH-HHHHHHH---------------------HCCCHHHHHHHHHHHHHHTTSTTHH--------
T ss_pred             hhhhhHHHHHHHhcccch-HHHHHHH---------------------hhhhHHHHHHHHHHHhhhhcccccc--------
Confidence            97 578888999999999 5998631                     1112244556888999997655321        


Q ss_pred             hhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHH
Q 003008          381 AMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFK  460 (858)
Q Consensus       381 ~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~  460 (858)
                                                         ..+...|++++|+.++.+++.+++..+++++.+++.....  ...
T Consensus       221 -----------------------------------~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~--~~~  263 (529)
T d1jdha_         221 -----------------------------------PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEG  263 (529)
T ss_dssp             -----------------------------------HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CSC
T ss_pred             -----------------------------------chhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc--hhh
Confidence                                               1122235788999999999999999999999997653332  122


Q ss_pred             HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcc
Q 003008          461 EAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE  539 (858)
Q Consensus       461 ~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~  539 (858)
                      ..|+++.|+.++++++..++..++++|++|+. +++++..+.+.|+++.|+.++...+..+++++.+..+|++++....+
T Consensus       264 ~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~  343 (529)
T d1jdha_         264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE  343 (529)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred             hhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhc
Confidence            35789999999999999999999999999987 78889999999999999998865555688999999999999873221


Q ss_pred             -cccccccccCcCcHHHHHhhcCCC-hhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHH
Q 003008          540 -MKSKFYDIPVNGSEKGLDAAESLD-PSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILE  616 (858)
Q Consensus       540 -~~~~~~i~~~~~i~~Li~ll~s~d-~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~  616 (858)
                       ......+...++++.+++++..++ ..+...++ ++.++..+...+          ..+.+                  
T Consensus       344 ~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~----------~~l~~------------------  395 (529)
T d1jdha_         344 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH----------APLRE------------------  395 (529)
T ss_dssp             HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH----------HHHHH------------------
T ss_pred             chhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhh----------hhhhh------------------
Confidence             113334667889999999998765 35566666 888887655443          11110                  


Q ss_pred             HhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHH
Q 003008          617 FITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTH  696 (858)
Q Consensus       617 ~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~  696 (858)
                                       .++++.++                                       .++...........  
T Consensus       396 -----------------~g~i~~L~---------------------------------------~lL~~~~~~~~~~~--  417 (529)
T d1jdha_         396 -----------------QGAIPRLV---------------------------------------QLLVRAHQDTQRRT--  417 (529)
T ss_dssp             -----------------TTHHHHHH---------------------------------------HHHHHHHHHHC-----
T ss_pred             -----------------cccHHHHH---------------------------------------HHHhcCCHHHHHHH--
Confidence                             11122222                                       11110000000000  


Q ss_pred             HHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhc
Q 003008          697 FIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISE  776 (858)
Q Consensus       697 ~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~  776 (858)
                      .....    .                         .   ...     +  .         -...++.+.++.+|.+++..
T Consensus       418 ~~~~~----~-------------------------~---~~~-----~--~---------~~~~~~~~~~~~al~~la~~  449 (529)
T d1jdha_         418 SMGGT----Q-------------------------Q---QFV-----E--G---------VRMEEIVEGCTGALHILARD  449 (529)
T ss_dssp             ----------------------------------------CB-----T--T---------BCHHHHHHHHHHHHHHHTTS
T ss_pred             Hhhhh----h-------------------------H---Hhh-----c--c---------cchHHHHHHHHHHHHHHccC
Confidence            00000    0                         0   000     0  0         11245667788889888643


Q ss_pred             CcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008          777 GVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRN  855 (858)
Q Consensus       777 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~  855 (858)
                        ..+...+.+.|++++|+++|.++++.+++.|+.+|++|+.+++.+..+.+.|+++.|++++.++++.+ ..|..+|.+
T Consensus       450 --~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~  527 (529)
T d1jdha_         450 --VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR  527 (529)
T ss_dssp             --HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence              22556888999999999999999999999999999999999999999999999999999999999999 888888876


Q ss_pred             CC
Q 003008          856 LP  857 (858)
Q Consensus       856 l~  857 (858)
                      ++
T Consensus       528 ls  529 (529)
T d1jdha_         528 MS  529 (529)
T ss_dssp             HC
T ss_pred             hC
Confidence            53

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.4e-28  Score=269.06  Aligned_cols=402  Identities=18%  Similarity=0.169  Sum_probs=326.8

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCccc-HHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKC-IDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN  177 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~-~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~  177 (858)
                      -.+.|+.+++.|+ +++++.+.+|+.+|+++.....+. .+.++ +.|++|.|+++|++. +++++..++++|.+++...
T Consensus        11 ~~~~i~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~   88 (434)
T d1q1sc_          11 VNWSVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNII-RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT   88 (434)
T ss_dssp             SSCCHHHHHHHHT-SSCHHHHHHHHHHHHHHHHSSSCCCHHHHH-HTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC
T ss_pred             hhhhHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHH-HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence            3678999999998 899999999999999986554442 34555 799999999999654 6789999999999998754


Q ss_pred             -hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-chHHHHHhCCCHHHHHHHHccCC-----HHHHHHH
Q 003008          178 -VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRLKIANTDILPLLIKSLEDEN-----MKVKEAA  250 (858)
Q Consensus       178 -~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~a  250 (858)
                       +.+..+.+.|+++.++.+|+++  ++.+++.++++|.|++.+. ..+..+.+.|+++.|+.++..++     ......+
T Consensus        89 ~~~~~~i~~~~~i~~l~~~L~~~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  166 (434)
T d1q1sc_          89 SEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL  166 (434)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred             hhhhhHhhhccchhhhhhccccC--CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHH
Confidence             6888999999999999999998  9999999999999999754 56888889999999999997653     3456778


Q ss_pred             HHHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChh-hHHHHHHcCCcccccccccccc
Q 003008          251 GGVLANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY-YRILIIEEGLVPVPMVGADAYK  328 (858)
Q Consensus       251 ~~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~-~~~~i~~~g~v~~~Lv~ll~~~  328 (858)
                      ++++.+++....... .....+.++.|+.+++++   .+.++..++++|.+++.++. .+..+.+.|             
T Consensus       167 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-------------  230 (434)
T d1q1sc_         167 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIEMVVKKG-------------  230 (434)
T ss_dssp             HHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHHHHHTTT-------------
T ss_pred             HHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc---ccchhhhHHhhhcccchhhhhhHHHHhhcc-------------
Confidence            899999988754333 344567889999998765   34578888888888876432 222222222             


Q ss_pred             cCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCC
Q 003008          329 SFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSE  408 (858)
Q Consensus       329 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~  408 (858)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (434)
T d1q1sc_         231 --------------------------------------------------------------------------------  230 (434)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHH
Q 003008          409 FPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHAL  487 (858)
Q Consensus       409 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL  487 (858)
                                    +++.|+.++++++.+++..++++|.+++ .+++.+..+++.|+++.|+.++++++++++..++++|
T Consensus       231 --------------~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L  296 (434)
T d1q1sc_         231 --------------VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM  296 (434)
T ss_dssp             --------------CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred             --------------cchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHH
Confidence                          4555666777778889999999999965 5677888899999999999999999999999999999


Q ss_pred             HHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhH
Q 003008          488 ERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSI  566 (858)
Q Consensus       488 ~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v  566 (858)
                      .+++. +++.+..+.+.|+++.++.++..++  ..++..++++|.+++..+ +......+.+.|+++.|++++.+.|+++
T Consensus       297 ~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~--~~v~~~a~~~l~nl~~~~-~~~~~~~l~~~~~i~~L~~ll~~~d~~~  373 (434)
T d1q1sc_         297 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD--FKTQKEAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMNLLSAKDTKI  373 (434)
T ss_dssp             HHHTTSCHHHHHHHHHTTCHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCHHHHHHHTTSSCHHH
T ss_pred             hhhccccchhHHHHhhhhhHHHHHHHHhccC--hHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHHHhcCCCHHH
Confidence            99998 6777888999999999999998555  889999999999998622 2223345778899999999999999999


Q ss_pred             HHHHH-HHHHhhcc------ccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008          567 ELTGN-VIEAAVSE------TTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFI  618 (858)
Q Consensus       567 ~~~a~-~l~~L~~~------~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l  618 (858)
                      ...++ ++.++...      .+.....+.+.|+++.+-.+..+++++++..|..+|.+.
T Consensus       374 ~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         374 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  432 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            99998 88887631      111115567889999998888999999999999988653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.2e-27  Score=262.51  Aligned_cols=405  Identities=18%  Similarity=0.223  Sum_probs=322.5

Q ss_pred             cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch--HHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCC-c
Q 003008          186 CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH--RLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALS-K  261 (858)
Q Consensus       186 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~-~  261 (858)
                      .+.|+.+++.++++  +++.+..|+.+|+++...+.+  ...+++.|++|.|+++|++. +++++..++++|.+++.. +
T Consensus        12 ~~~i~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~   89 (434)
T d1q1sc_          12 NWSVEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS   89 (434)
T ss_dssp             SCCHHHHHHHHTSS--CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCH
T ss_pred             hhhHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCh
Confidence            36799999999998  999999999999998655444  57788999999999999654 688999999999999876 4


Q ss_pred             CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCC
Q 003008          262 SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSL  340 (858)
Q Consensus       262 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~  340 (858)
                      +.+..+++.|+++.|+++|+++   .+.+++.++++|+|++. ++..+..+.+.|++. +|+.++.              
T Consensus        90 ~~~~~i~~~~~i~~l~~~L~~~---~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~-~l~~~l~--------------  151 (434)
T d1q1sc_          90 EQTKAVVDGGAIPAFISLLASP---HAHISEQAVWALGNIAGDGSAFRDLVIKHGAID-PLLALLA--------------  151 (434)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH-HHHHHTC--------------
T ss_pred             hhhhHhhhccchhhhhhccccC---CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhh-HHHHHHH--------------
Confidence            5677889999999999999875   45689999999999998 567888899999999 4877531              


Q ss_pred             CCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccc
Q 003008          341 PDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPW  420 (858)
Q Consensus       341 ~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~  420 (858)
                              .                  ...                                                  
T Consensus       152 --------~------------------~~~--------------------------------------------------  155 (434)
T d1q1sc_         152 --------V------------------PDL--------------------------------------------------  155 (434)
T ss_dssp             --------S------------------SCG--------------------------------------------------
T ss_pred             --------h------------------ccc--------------------------------------------------
Confidence                    0                  000                                                  


Q ss_pred             cccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHH
Q 003008          421 IDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQ  498 (858)
Q Consensus       421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~  498 (858)
                                 ..........+++++.+++. ...........++++.|+.++++++++++..++++|.+++. +.+.+.
T Consensus       156 -----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  224 (434)
T d1q1sc_         156 -----------STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE  224 (434)
T ss_dssp             -----------GGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             -----------ccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHH
Confidence                       00001122344555555443 22333334456789999999999999999999999999998 456677


Q ss_pred             HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhc
Q 003008          499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVS  578 (858)
Q Consensus       499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~  578 (858)
                      .+.+.|+++.|+.++..++  ..++..+..+|.+++..                                          
T Consensus       225 ~~~~~~~~~~Lv~ll~~~~--~~~~~~al~~l~~l~~~------------------------------------------  260 (434)
T d1q1sc_         225 MVVKKGVVPQLVKLLGATE--LPIVTPALRAIGNIVTG------------------------------------------  260 (434)
T ss_dssp             HHHTTTCHHHHHHHHTCSC--HHHHHHHHHHHHHHTTS------------------------------------------
T ss_pred             HHhhcccchhcccccccch--hhhhhchhhhhhhHHhh------------------------------------------
Confidence            7888999999999998554  78888888888888761                                          


Q ss_pred             cccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCC
Q 003008          579 ETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQP  658 (858)
Q Consensus       579 ~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~  658 (858)
                      +...+ ..+.+.|+++.++.++++.+++++..++++|.+++...+.....                              
T Consensus       261 ~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~------------------------------  309 (434)
T d1q1sc_         261 TDEQT-QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ------------------------------  309 (434)
T ss_dssp             CHHHH-HHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH------------------------------
T ss_pred             hhHHH-HHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHH------------------------------
Confidence            11122 56778899999999999999999999999999986533221111                              


Q ss_pred             CccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccc
Q 003008          659 EKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPI  738 (858)
Q Consensus       659 ~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  738 (858)
                                                                                                      
T Consensus       310 --------------------------------------------------------------------------------  309 (434)
T d1q1sc_         310 --------------------------------------------------------------------------------  309 (434)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhc
Q 003008          739 NMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSM  818 (858)
Q Consensus       739 ~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~  818 (858)
                         +...|+++.+++++.++++++|..|+++|.|++.....+....+.+.|++++|+++|++++++++..++.+|.+|..
T Consensus       310 ---i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         310 ---VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  386 (434)
T ss_dssp             ---HHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             ---HhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence               11456789999999999999999999999999988776677789999999999999999999999999999999853


Q ss_pred             C-------ccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008          819 D-------SENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRN  855 (858)
Q Consensus       819 ~-------~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~  855 (858)
                      .       +..+..+.+.|++..|..+..++++++ +.|...|.+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~  431 (434)
T d1q1sc_         387 AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK  431 (434)
T ss_dssp             HHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            1       224456789999999999999999999 888887765

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.8e-26  Score=261.11  Aligned_cols=406  Identities=17%  Similarity=0.137  Sum_probs=327.8

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcc-cHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKK-CIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN  177 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~-~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~  177 (858)
                      ....++.++..+. ++|...+..++..++++...+.+ ..+.++ +.|++|.|+.+++.+ +++++..|+++|.||+..+
T Consensus        74 ~~~~l~~~~~~~~-s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii-~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~  151 (503)
T d1wa5b_          74 LQQELPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVI-QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT  151 (503)
T ss_dssp             --CCHHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHH-HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcCCCchHHHHH-HCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC
Confidence            3567899999997 89999999999999987654332 334566 799999999999865 7789999999999998765


Q ss_pred             -hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHH
Q 003008          178 -VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLA  255 (858)
Q Consensus       178 -~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~  255 (858)
                       .....+.+.|+++.++.+|.++  +..++..++++|+|++.+ +++|..+.+.|++++|+.++.+.++.++..++|+|.
T Consensus       152 ~~~~~~~~~~g~i~~l~~lL~s~--~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~  229 (503)
T d1wa5b_         152 SAQTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS  229 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHhcCC--ChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHH
Confidence             5777788899999999999998  999999999999999865 578999999999999999999999999999999999


Q ss_pred             HHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCcc
Q 003008          256 NLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPE  333 (858)
Q Consensus       256 nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~  333 (858)
                      |++....... .....++++.|+.++.+.   .+.++..++++|.+++.. ++....+++.|++                
T Consensus       230 nl~~~~~~~~~~~~~~~~l~~l~~~l~~~---d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~----------------  290 (503)
T d1wa5b_         230 NLCRGKKPQPDWSVVSQALPTLAKLIYSM---DTETLVDACWAISYLSDGPQEAIQAVIDVRIP----------------  290 (503)
T ss_dssp             HHHCCSSSCCCHHHHGGGHHHHHHHTTCC---CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH----------------
T ss_pred             HHhcCCccchHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHhhccCCchhhhhhhhhhhh----------------
Confidence            9998754433 445568899999999765   344778888898888864 3333444444444                


Q ss_pred             CCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccc
Q 003008          334 LHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDR  413 (858)
Q Consensus       334 l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~  413 (858)
                                                                                                      
T Consensus       291 --------------------------------------------------------------------------------  290 (503)
T d1wa5b_         291 --------------------------------------------------------------------------------  290 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008          414 QLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV  492 (858)
Q Consensus       414 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~  492 (858)
                                 +.++.++.+++..++..++.+|++++ .+++....+.+.|+++.|..+++++++.++..++++|+|++.
T Consensus       291 -----------~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~  359 (503)
T d1wa5b_         291 -----------KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA  359 (503)
T ss_dssp             -----------HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             -----------hhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence                       44455556667778888999999965 566777788899999999999999999999999999999988


Q ss_pred             -ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc-ccccccccCcCcHHHHHhhcCCChhHHHHH
Q 003008          493 -SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM-KSKFYDIPVNGSEKGLDAAESLDPSIELTG  570 (858)
Q Consensus       493 -~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a  570 (858)
                       ++.....+.+.|+++.++.++..++  ..++..++++|.|++..+.+. .....+...|+++.+++++.+.|+++...+
T Consensus       360 ~~~~~~~~i~~~~~l~~li~~l~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~  437 (503)
T d1wa5b_         360 GNTEQIQAVIDANLIPPLVKLLEVAE--YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT  437 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred             ccHHHHHHHHHccccchhHHhcccCC--hhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHH
Confidence             6788889999999999999998555  889999999999998633222 122346678999999999999999998888


Q ss_pred             H-HHHHhhccc-----------cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008          571 N-VIEAAVSET-----------TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII  621 (858)
Q Consensus       571 ~-~l~~L~~~~-----------~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~  621 (858)
                      + +|.++....           ......+.+.|++..|-.+..+++.++...|..+|......
T Consensus       438 L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~  500 (503)
T d1wa5b_         438 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE  500 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            8 888875211           11114567889999988888899999999999988765443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.6e-24  Score=245.80  Aligned_cols=411  Identities=16%  Similarity=0.172  Sum_probs=328.4

Q ss_pred             cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc--hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc-
Q 003008          145 SGCINLTVNLLRSESSAACEAAAGLLRSISSIN--VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK-  221 (858)
Q Consensus       145 ~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~-  221 (858)
                      ...++.++..+.+++.+.+..++..++++...+  +.-+.+.+.|++|.|+.+++... ++.++..|+++|.|++..+. 
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~-~~~iq~~a~~~L~ni~~~~~~  153 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSA  153 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHH
Confidence            567889999999999999999999999885432  45678999999999999998652 78899999999999996654 


Q ss_pred             hHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 003008          222 HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIE  300 (858)
Q Consensus       222 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~n  300 (858)
                      ....+.+.|+++.++.+|.+++.++++.++++|.||+.. +..+..+.+.|+++.|+.++.+.   ...+++.++++|+|
T Consensus       154 ~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~---~~~~~~~~~~~l~n  230 (503)
T d1wa5b_         154 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN---KPSLIRTATWTLSN  230 (503)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC---CHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC---CHHHHHHHHHHHHH
Confidence            567777999999999999999999999999999999875 57788899999999999999765   34577888888888


Q ss_pred             HhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHh
Q 003008          301 LAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMN  380 (858)
Q Consensus       301 l~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~  380 (858)
                      ++.+..             +....                                                        
T Consensus       231 l~~~~~-------------~~~~~--------------------------------------------------------  241 (503)
T d1wa5b_         231 LCRGKK-------------PQPDW--------------------------------------------------------  241 (503)
T ss_dssp             HHCCSS-------------SCCCH--------------------------------------------------------
T ss_pred             HhcCCc-------------cchHH--------------------------------------------------------
Confidence            885422             01000                                                        


Q ss_pred             hhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHH
Q 003008          381 AMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLF  459 (858)
Q Consensus       381 ~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l  459 (858)
                                                           ....+.++.|+.++.++|++++..++++|.+++ ..++....+
T Consensus       242 -------------------------------------~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~  284 (503)
T d1wa5b_         242 -------------------------------------SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV  284 (503)
T ss_dssp             -------------------------------------HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             -------------------------------------HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhh
Confidence                                                 000125677888999999999999999999976 566677889


Q ss_pred             HHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCc
Q 003008          460 KEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSK  538 (858)
Q Consensus       460 ~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~  538 (858)
                      .+.|+++.|+.++.+++..++..++.+|++++. +......+.+.|+++.|..++..++  ..+++.++++|+|++..+ 
T Consensus       285 ~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~--~~i~~~~~~~l~nl~~~~-  361 (503)
T d1wa5b_         285 IDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK--ENIKKEACWTISNITAGN-  361 (503)
T ss_dssp             HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSC-
T ss_pred             hhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCC--HHHHHHHHHHHHHHhhcc-
Confidence            999999999999999999999999999999998 5666778889999999999998554  889999999999998721 


Q ss_pred             ccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008          539 EMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFI  618 (858)
Q Consensus       539 ~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l  618 (858)
                                                               .... ..+.+.|+++.+++++.+.+..++..|+++|.++
T Consensus       362 -----------------------------------------~~~~-~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         362 -----------------------------------------TEQI-QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             -----------------------------------------HHHH-HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------HHHH-HHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence                                                     1122 5677889999999999999999999999999998


Q ss_pred             hcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHH
Q 003008          619 TIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFI  698 (858)
Q Consensus       619 ~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~  698 (858)
                      +.........                                                                      
T Consensus       400 ~~~~~~~~~~----------------------------------------------------------------------  409 (503)
T d1wa5b_         400 SSGGLQRPDI----------------------------------------------------------------------  409 (503)
T ss_dssp             HHHTTTCTHH----------------------------------------------------------------------
T ss_pred             HhcccccHHH----------------------------------------------------------------------
Confidence            6432211110                                                                      


Q ss_pred             HHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCc
Q 003008          699 KLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGV  778 (858)
Q Consensus       699 ~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~  778 (858)
                                                              ...+.+.|++++|+++|.+.+.++...+..+|.+|.....
T Consensus       410 ----------------------------------------~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~  449 (503)
T d1wa5b_         410 ----------------------------------------IRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE  449 (503)
T ss_dssp             ----------------------------------------HHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------HHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                                                    0002256789999999999999999999999998863211


Q ss_pred             ----------chhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCc
Q 003008          779 ----------VDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDS  820 (858)
Q Consensus       779 ----------~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~  820 (858)
                                ......+-+.||+..|-.+..+++++++..|...|-+...++
T Consensus       450 ~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         450 ADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             HHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence                      112235678899998877777888999999999887765443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.8e-25  Score=245.75  Aligned_cols=421  Identities=16%  Similarity=0.167  Sum_probs=285.3

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-chhH
Q 003008          102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI-NVYR  180 (858)
Q Consensus       102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-~~~~  180 (858)
                      +.||.|+++|+ ++|+++|..|+++|.|++.+++..++.+. +.|+||.|+++|++++++++..|+++|.||+.. ++++
T Consensus         2 ~~ip~lv~~L~-~~~~~~~~~a~~~l~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVY-QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHH-HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            56899999998 89999999999999999987666554555 899999999999999999999999999999964 5799


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHH----------------ccCCH
Q 003008          181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSL----------------EDENM  244 (858)
Q Consensus       181 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll----------------~~~~~  244 (858)
                      ..+.+.|+++.++.++.+.. ++.++..++++|.+++.++..+......|. +.++..+                ...++
T Consensus        80 ~~i~~~g~v~~li~~l~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHCCChHHHHHHHhccC-cHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            99999999999999887653 889999999999999998888777766554 4444332                23477


Q ss_pred             HHHHHHHHHHHHHcCCcCchHHHHh-CCCHHHHHHHHccCCCC---CHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccc
Q 003008          245 KVKEAAGGVLANLALSKSNHNILVE-AGVIPKLAMLLKANVEG---SKVIRKEARNALIELAKDDYYRILIIEEGLVPVP  320 (858)
Q Consensus       245 ~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~---~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~  320 (858)
                      .++..++++|.+++..++++..+.. .|+++.|++++++....   .......+...+.+......    ......... 
T Consensus       158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~-  232 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLD----AEVPTRYRQ-  232 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHH----HHSCCHHHH-
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhH----HHHHHHHHH-
Confidence            8999999999999999888886644 57799999988642110   01112233333333322110    000000000 


Q ss_pred             cccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhccccc
Q 003008          321 MVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESE  400 (858)
Q Consensus       321 Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~  400 (858)
                      +....                      .  ..........++.......     .....           .....     
T Consensus       233 ~~~~~----------------------~--~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~-----  267 (457)
T d1xm9a1         233 LEYNA----------------------R--NAYTEKSSTGCFSNKSDKM-----MNNNY-----------DCPLP-----  267 (457)
T ss_dssp             HHHTC--------------------------------------------------------------------CC-----
T ss_pred             HHhhh----------------------h--hhhhHHHhhhhhhhhhHHH-----HHHHH-----------hhhhH-----
Confidence            00000                      0  0000000000010000000     00000           00000     


Q ss_pred             CCCCCCCCCCcccccccccccccHHHHHHHhC-CCCHHHHHHHHHHHHHhcCChh------hHHHHHHcCcHHHHHHhhc
Q 003008          401 DGRKPQSEFPIDRQLTLLPWIDGVARLVLILG-LEDERAIARAAESIADISINEH------MRMLFKEAGAIKYLVKLLD  473 (858)
Q Consensus       401 ~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~~~------~~~~l~~~g~i~~Lv~LL~  473 (858)
                           ........ ...+...+.++.++.++. +.++.++..+++++.+++....      .+..+.+.|+++.|+.+++
T Consensus       268 -----~~~~~~~~-~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~  341 (457)
T d1xm9a1         268 -----EEETNPKG-SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ  341 (457)
T ss_dssp             -----CCCSSCCG-GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT
T ss_pred             -----HhhhhhHH-HHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhc
Confidence                 00000111 122333457788888875 4578899999999999654221      3445567899999999999


Q ss_pred             CCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCC----ccHHHHHHHHHHHHHhcCCCcccccccccccC
Q 003008          474 HSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLD----ISESLMEKTLDILGRILDPSKEMKSKFYDIPV  549 (858)
Q Consensus       474 ~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~  549 (858)
                      ++++.++..++++|++|+.+++++..+.+ ++++.++.++....    .+++++..++.+|.+++.              
T Consensus       342 ~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~--------------  406 (457)
T d1xm9a1         342 SGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA--------------  406 (457)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT--------------
T ss_pred             CccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhc--------------
Confidence            99999999999999999999998888765 68999999886432    234566666666666664              


Q ss_pred             cCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcchH
Q 003008          550 NGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKT-SYPDLQRKAASILEFITIIDPSMD  626 (858)
Q Consensus       550 ~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~  626 (858)
                                                  .+.+.+ +.+.+.|+++.|+.++.+ +++.+++.|+.+|.+|..+.+.+.
T Consensus       407 ----------------------------~~~~~~-~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~  455 (457)
T d1xm9a1         407 ----------------------------SQPQLA-KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG  455 (457)
T ss_dssp             ----------------------------TCTHHH-HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred             ----------------------------CCHHHH-HHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhHh
Confidence                                        122344 778899999999999976 467899999999999988776553

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-24  Score=240.73  Aligned_cols=428  Identities=16%  Similarity=0.147  Sum_probs=282.1

Q ss_pred             CcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcchH
Q 003008          146 GCINLTVNLLRSESSAACEAAAGLLRSISSI-NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHR  223 (858)
Q Consensus       146 g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~  223 (858)
                      +.||.|+++|++++++++..|+++|.||+.. +++|..+.+.|+||.|+++|+++  ++.+++.|+++|.||+ .+++++
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHH
Confidence            4689999999999999999999999999974 57999999999999999999998  9999999999999999 566789


Q ss_pred             HHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHH-cc------------CCCCCHH
Q 003008          224 LKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL-KA------------NVEGSKV  289 (858)
Q Consensus       224 ~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll-~~------------~~~~~~~  289 (858)
                      ..+.+.|+++.|+.++.+. +++++..++++|.+++..+..+......|. +.++..+ ..            .....+.
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            9999999999999998764 889999999999999999888877766544 4444432 11            0112345


Q ss_pred             HHHHHHHHHHHHhcChhhHHHHHHc-CCcccccccccccccCCccCCCCCCCCCcchhhcc-cCCchhhHHHHHHhccCC
Q 003008          290 IRKEARNALIELAKDDYYRILIIEE-GLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERT-SQGPSKFGANELLLGLNV  367 (858)
Q Consensus       290 ~~~~a~~aL~nl~~~~~~~~~i~~~-g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~a~~aL~nL~~  367 (858)
                      +++.++.+|.+++.+++++..+... |+++ .|+.++.  +.               .... ........+...+.+.. 
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~-~l~~ll~--~~---------------~~~~~~~~~~~~~~~~~l~~~~-  219 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLID-SLMAYVQ--NC---------------VAASRCDDKSVENCMCVLHNLS-  219 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHH-HHHHHHH--HH---------------HHHTCTTCTTHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHH-HHHHHHh--cc---------------hhhhhhHHHHHHHHHHHHhhhh-
Confidence            7889999999999998888877664 5566 4776531  00               0000 00000000111111000 


Q ss_pred             CCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHH
Q 003008          368 SDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIA  447 (858)
Q Consensus       368 ~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~  447 (858)
                                                                                          ..+.......+.
T Consensus       220 --------------------------------------------------------------------~~~~~~~~~~~~  231 (457)
T d1xm9a1         220 --------------------------------------------------------------------YRLDAEVPTRYR  231 (457)
T ss_dssp             --------------------------------------------------------------------TTHHHHSCCHHH
T ss_pred             --------------------------------------------------------------------hhhHHHHHHHHH
Confidence                                                                                000000000000


Q ss_pred             HhcCChhhHHHHHHcCcHHHHHHhhcCCcH-HHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHH
Q 003008          448 DISINEHMRMLFKEAGAIKYLVKLLDHSSD-AVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKT  526 (858)
Q Consensus       448 ~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~-~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a  526 (858)
                      .+.....      ...........+..... .....+...+...+........+...++++.++.++.. ..++.+++.+
T Consensus       232 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~-~~~~~~~~~~  304 (457)
T d1xm9a1         232 QLEYNAR------NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK-SKKDATLEAC  304 (457)
T ss_dssp             HHHHTC----------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred             HHHhhhh------hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhc-ccchHHHHHH
Confidence            0000000      00011111111211111 11222223333344456666677777788888888874 3357778888


Q ss_pred             HHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHH
Q 003008          527 LDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPD  606 (858)
Q Consensus       527 ~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~  606 (858)
                      ..++.+++......                                     .....+ ..+.+.|+++.|++++.++++.
T Consensus       305 ~~~l~~l~~~~~~~-------------------------------------~~~~~~-~~~~~~~~l~~L~~~l~~~~~~  346 (457)
T d1xm9a1         305 AGALQNLTASKGLM-------------------------------------SSGMSQ-LIGLKEKGLPQIARLLQSGNSD  346 (457)
T ss_dssp             HHHHHHHTTCSSSH-------------------------------------HHHHHH-HHHTTSCCHHHHHHHTTCSCHH
T ss_pred             HHHHHHHhhccccc-------------------------------------hHHHHH-HHHHHcCChHHHHhhhcCccHH
Confidence            88888887621000                                     000112 4566789999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhh
Q 003008          607 LQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSK  686 (858)
Q Consensus       607 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~  686 (858)
                      ++..++++|.+++.+.+.+..+    ..                                                    
T Consensus       347 v~~~a~~~l~~La~~~~~~~~i----~~----------------------------------------------------  370 (457)
T d1xm9a1         347 VVRSGASLLSNMSRHPLLHRVM----GN----------------------------------------------------  370 (457)
T ss_dssp             HHHHHHHHHHHHHTSGGGHHHH----HH----------------------------------------------------
T ss_pred             HHHHHHHHHHHHhhChhHHHHH----HH----------------------------------------------------
Confidence            9999999999998766554443    00                                                    


Q ss_pred             hhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhc------cCCH
Q 003008          687 QFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIK------SFSS  760 (858)
Q Consensus       687 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~------~~~~  760 (858)
                                                                                 +++++++.+|.      +.+.
T Consensus       371 -----------------------------------------------------------~~i~~li~~L~~~~~~~~~~~  391 (457)
T d1xm9a1         371 -----------------------------------------------------------QVFPEVTRLLTSHTGNTSNSE  391 (457)
T ss_dssp             -----------------------------------------------------------HTHHHHHHTTTSCCSCSTTHH
T ss_pred             -----------------------------------------------------------hhHHHHHHHHhccccCcCCcH
Confidence                                                                       12333343332      2346


Q ss_pred             HHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcC-ChHHHHHHHHHHHhhhcCccchH
Q 003008          761 EAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEG-SNRAVEAGLAILYNLSMDSENHS  824 (858)
Q Consensus       761 ~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nL~~~~~~~~  824 (858)
                      +++..|+.+|.|++...+. +.+.+++.||+++|++++.+. ++++++.|+.+|+||..+++.|.
T Consensus       392 ~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~  455 (457)
T d1xm9a1         392 DILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG  455 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred             HHHHHHHHHHHHHhcCCHH-HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhHh
Confidence            7999999999999977655 788999999999999999764 67899999999999999988764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.6e-14  Score=166.82  Aligned_cols=530  Identities=13%  Similarity=0.072  Sum_probs=318.6

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhH
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYR  180 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~  180 (858)
                      ...+|.|.+.++ +.| +++..++..|.++...-.+.  ..  ....++.+..++.+++..+|+.|+.+|..++...+..
T Consensus        48 ~~lip~l~~~~~-~~~-ev~~~~~~~l~~~~~~~~~~--~~--~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~  121 (588)
T d1b3ua_          48 SELLPFLTDTIY-DED-EVLLALAEQLGTFTTLVGGP--EY--VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS  121 (588)
T ss_dssp             HTHHHHHHHTCC-CCH-HHHHHHHHHHTTCSGGGTSG--GG--GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHhc-CcH-HHHHHHHHHHHHHHHHcCCh--hH--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH
Confidence            345677777775 444 57777777777766432111  11  1456788888888889999999999999997643222


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008          181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA  258 (858)
Q Consensus       181 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~  258 (858)
                      .  .+.-.+|.+..+..+.  ....+..++..+..+...  +..+..     .++.+.+++.+.++.+|..++.++..++
T Consensus       122 ~--~~~~l~p~i~~L~~~~--~~~~r~~a~~ll~~~~~~~~~~~~~~-----l~~~~~~l~~D~~~~VR~~a~~~l~~~~  192 (588)
T d1b3ua_         122 D--LEAHFVPLVKRLAGGD--WFTSRTSACGLFSVCYPRVSSAVKAE-----LRQYFRNLCSDDTPMVRRAAASKLGEFA  192 (588)
T ss_dssp             H--HHHTHHHHHHHHHTCS--SHHHHHHHGGGHHHHTTTSCHHHHHH-----HHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            1  2233456556676665  677777777777777543  233333     3677888899999999999999999998


Q ss_pred             CCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCcccccccccccccCCccCCC
Q 003008          259 LSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD--DYYRILIIEEGLVPVPMVGADAYKSFRPELHS  336 (858)
Q Consensus       259 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~--~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~  336 (858)
                      ..-...  ......++.+..+++..   ...+|..++.++..++..  ++....    -.++. +..++           
T Consensus       193 ~~~~~~--~~~~~l~~~l~~l~~d~---~~~vr~~a~~~l~~i~~~~~~~~~~~----~i~~~-l~~~~-----------  251 (588)
T d1b3ua_         193 KVLELD--NVKSEIIPMFSNLASDE---QDSVRLLAVEACVNIAQLLPQEDLEA----LVMPT-LRQAA-----------  251 (588)
T ss_dssp             HTSCHH--HHHHTHHHHHHHHHTCS---CHHHHTTHHHHHHHHHHHSCHHHHHH----HTHHH-HHHHH-----------
T ss_pred             HHhcHH--HHHHHHHHHHHHHhcCC---chhhHHHHHHHHHHhhccCCHHHHHH----HHHHH-HHHhc-----------
Confidence            753322  22334567777777654   455888999999988762  222111    12331 33321           


Q ss_pred             CCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccc
Q 003008          337 WPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLT  416 (858)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~  416 (858)
                                 ...+..++..++.+|.++...                         .+                    .
T Consensus       252 -----------~D~~~~Vr~~~~~~l~~l~~~-------------------------~~--------------------~  275 (588)
T d1b3ua_         252 -----------EDKSWRVRYMVADKFTELQKA-------------------------VG--------------------P  275 (588)
T ss_dssp             -----------TCSSHHHHHHHHHTHHHHHHH-------------------------HC--------------------H
T ss_pred             -----------ccccHHHHHHHHHhHHHHHHH-------------------------hh--------------------h
Confidence                       111112333344444433100                         00                    0


Q ss_pred             cccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc--CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcCh
Q 003008          417 LLPWIDGVARLVLILGLEDERAIARAAESIADIS--INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSR  494 (858)
Q Consensus       417 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~--~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~  494 (858)
                      .......++.+..++++++.+++..++.++..++  ..........-...++.+..++++.++.+|..++.++..++..-
T Consensus       276 ~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~  355 (588)
T d1b3ua_         276 EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL  355 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH
T ss_pred             hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc
Confidence            0111236788889999999999999999999854  23344444455678899999999999999999988888776411


Q ss_pred             hHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HH
Q 003008          495 GVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VI  573 (858)
Q Consensus       495 ~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l  573 (858)
                      ....  .....+|.+..++++.+  .+++..+..++..+..   .....  -.....++.+..++.+.++.++..++ ++
T Consensus       356 ~~~~--~~~~l~p~l~~~l~d~~--~~v~~~~~~~l~~~~~---~~~~~--~~~~~ll~~l~~~~~d~~~~~r~~~~~~l  426 (588)
T d1b3ua_         356 GKDN--TIEHLLPLFLAQLKDEC--PEVRLNIISNLDCVNE---VIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYM  426 (588)
T ss_dssp             CHHH--HHHHTHHHHHHHHTCSC--HHHHHHHHTTCHHHHH---HSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             chhH--HHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHh---hcchh--hhhhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            1111  12235778888887444  7777777666655543   10000  00011244455555555555655555 54


Q ss_pred             HHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCc
Q 003008          574 EAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDI  653 (858)
Q Consensus       574 ~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~  653 (858)
                      ..++.....   ........+.+..++.++...++..|+.+|..+...      +                         
T Consensus       427 ~~l~~~~~~---~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~------~-------------------------  472 (588)
T d1b3ua_         427 PLLAGQLGV---EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK------F-------------------------  472 (588)
T ss_dssp             HHHHHHHCG---GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------H-------------------------
T ss_pred             HHHHHHcCh---HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH------h-------------------------
Confidence            444322111   111122334455555555555555555555444210      0                         


Q ss_pred             CCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCC
Q 003008          654 EGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQD  733 (858)
Q Consensus       654 ~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~  733 (858)
                                                                          .       .                   
T Consensus       473 ----------------------------------------------------~-------~-------------------  474 (588)
T d1b3ua_         473 ----------------------------------------------------G-------K-------------------  474 (588)
T ss_dssp             ----------------------------------------------------C-------H-------------------
T ss_pred             ----------------------------------------------------C-------c-------------------
Confidence                                                                0       0                   


Q ss_pred             CCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHH
Q 003008          734 FENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAIL  813 (858)
Q Consensus       734 ~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL  813 (858)
                        +.     .....++.+.+++.+++..+|..++.++..+.....    ........+|.|++++.|+.+.||..++.+|
T Consensus       475 --~~-----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~----~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l  543 (588)
T d1b3ua_         475 --EW-----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG----QDITTKHMLPTVLRMAGDPVANVRFNVAKSL  543 (588)
T ss_dssp             --HH-----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             --HH-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC----hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence              00     011246677777788888888888888877653221    1234455778888888888888999999999


Q ss_pred             HhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008          814 YNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL  856 (858)
Q Consensus       814 ~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l  856 (858)
                      .++...-..  ......+.|.+..++.++|+.+ ..|..++..|
T Consensus       544 ~~i~~~~~~--~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         544 QKIGPILDN--STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHGGGSCH--HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCc--HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            888654322  2234456788888888888888 5555555554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.5e-16  Score=158.92  Aligned_cols=192  Identities=19%  Similarity=0.216  Sum_probs=164.2

Q ss_pred             CCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHH
Q 003008          115 YDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVN-LLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEI  192 (858)
Q Consensus       115 ~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~-lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~L  192 (858)
                      .|.+.+..|+.+|.+++.+.++. ..++ ..|+++.++. ++.++++++|..|+++|++++.++ .++..+.+.|++|.|
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d~a-~~l~-~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMDNA-ADFC-QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHH-HHHH-HTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCHHHH-HHHH-HcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            34577889999999999876664 4566 7999999886 788899999999999999999865 688999999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC-CcCchHHHHhC
Q 003008          193 TGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL-SKSNHNILVEA  270 (858)
Q Consensus       193 v~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~  270 (858)
                      +.++.+.+ ++.+++.++++|.+++.+ +.++..+...|+++.|+.+++++++.++..++++|.+++. .++.+..+.+.
T Consensus       107 v~lL~~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHhhcCC-CHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            99997543 889999999999999965 4568888899999999999999999999999999999976 46788899999


Q ss_pred             CCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHH
Q 003008          271 GVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILII  312 (858)
Q Consensus       271 g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~  312 (858)
                      |+++.|+.++++++.   .+++.++.+|++|+.+ +..+..+.
T Consensus       186 ~~v~~L~~lL~~~~~---~~~~~a~~aL~~L~~~~~~~~~~~~  225 (264)
T d1xqra1         186 GMVQQLVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECR  225 (264)
T ss_dssp             THHHHHHHHHTSCCS---THHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHHHHcCCCH---HHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999999987643   3899999999999985 44444443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.9e-16  Score=158.75  Aligned_cols=189  Identities=13%  Similarity=0.168  Sum_probs=166.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHH-hhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHH
Q 003008          433 LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVK-LLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLV  510 (858)
Q Consensus       433 ~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~-LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li  510 (858)
                      +.+.+.+..|+.+|.+++.+.+++..+...|++++|+. +++++++++|..|+++|++++. ++.++..+.+.|+++.|+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            45678899999999999999999999999999999986 7889999999999999999998 688899999999999999


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc-cchhhhHh
Q 003008          511 NTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET-TTSYGKVL  588 (858)
Q Consensus       511 ~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~-~~~~~~i~  588 (858)
                      .++. ++.++.+++.+.++|++++..+  ...+..+...||++.+++++.+++++++..++ ++.+++... ..+ ..+.
T Consensus       108 ~lL~-~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~  183 (264)
T d1xqra1         108 RLLD-RDACDTVRVKALFAISCLVREQ--EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK-GTLC  183 (264)
T ss_dssp             HHHH-HCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred             HHhh-cCCCHHHHHHHHHHHHHHhccc--hhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH-HHHH
Confidence            9997 3445889999999999999732  23445677889999999999999999999999 999988654 455 8889


Q ss_pred             hccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 003008          589 DSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSM  625 (858)
Q Consensus       589 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~  625 (858)
                      +.|++|.|+.+|+++++.+++.|+++|.+|+.+.+..
T Consensus       184 ~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~  220 (264)
T d1xqra1         184 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG  220 (264)
T ss_dssp             HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999999999999999999999766543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.7e-13  Score=152.96  Aligned_cols=526  Identities=13%  Similarity=0.031  Sum_probs=318.3

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC---cchHH
Q 003008          148 INLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD---KKHRL  224 (858)
Q Consensus       148 i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~---~~~~~  224 (858)
                      +..|++-|++++..+|..|+..|..++..-...+.  ....+|.|.++++.   +.+++..++..|.++...   ++.. 
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~--~~~lip~l~~~~~~---~~ev~~~~~~~l~~~~~~~~~~~~~-   85 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERT--RSELLPFLTDTIYD---EDEVLLALAEQLGTFTTLVGGPEYV-   85 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHH--HHTHHHHHHHTCCC---CHHHHHHHHHHHTTCSGGGTSGGGG-
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhh--HHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHcCChhHH-
Confidence            56688889999999999999999988763221111  12358999998876   446777777888877632   2222 


Q ss_pred             HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008          225 KIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD  304 (858)
Q Consensus       225 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~  304 (858)
                          ...++.+..++..+++.+|+.|+.+|..++.......  .+.-.+|.+..+..+.   ....+..|+..+..+...
T Consensus        86 ----~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~--~~~~l~p~i~~L~~~~---~~~~r~~a~~ll~~~~~~  156 (588)
T d1b3ua_          86 ----HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD--LEAHFVPLVKRLAGGD---WFTSRTSACGLFSVCYPR  156 (588)
T ss_dssp             ----GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH--HHHTHHHHHHHHHTCS---SHHHHHHHGGGHHHHTTT
T ss_pred             ----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHH
Confidence                2346777788888899999999999999986543222  2223345444455432   344566666666666542


Q ss_pred             --hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhh
Q 003008          305 --DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAM  382 (858)
Q Consensus       305 --~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~l  382 (858)
                        +..+..+     ++ .+.+++                      ...+..+++.++.++..++..-.            
T Consensus       157 ~~~~~~~~l-----~~-~~~~l~----------------------~D~~~~VR~~a~~~l~~~~~~~~------------  196 (588)
T d1b3ua_         157 VSSAVKAEL-----RQ-YFRNLC----------------------SDDTPMVRRAAASKLGEFAKVLE------------  196 (588)
T ss_dssp             SCHHHHHHH-----HH-HHHHHH----------------------TCSCHHHHHHHHHHHHHHHHTSC------------
T ss_pred             hhHHHHHHH-----HH-HHHHHh----------------------ccCCHHHHHHHHHHHHHHHHHhc------------
Confidence              3333332     22 133321                      11111233334444444421110            


Q ss_pred             hhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC--ChhhHHHHH
Q 003008          383 VGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI--NEHMRMLFK  460 (858)
Q Consensus       383 i~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l~  460 (858)
                                                       ....+...++.+..+++++++.++..|+.++..+..  .++..    
T Consensus       197 ---------------------------------~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~----  239 (588)
T d1b3ua_         197 ---------------------------------LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL----  239 (588)
T ss_dssp             ---------------------------------HHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH----
T ss_pred             ---------------------------------HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHH----
Confidence                                             000112256677788899999999999999998542  22222    


Q ss_pred             HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc
Q 003008          461 EAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM  540 (858)
Q Consensus       461 ~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~  540 (858)
                      ....++.+..++.+.+..||..++.+|+++...-  .........++.+..++.+++  .+++..+..++..++..-.. 
T Consensus       240 ~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~ll~d~~--~~vr~~a~~~l~~~~~~l~~-  314 (588)
T d1b3ua_         240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV--GPEITKTDLVPAFQNLMKDCE--AEVRAAASHKVKEFCENLSA-  314 (588)
T ss_dssp             HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH--CHHHHHHTHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHTSCT-
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh--hhhhhhhhhhHHHHHHHhccc--hHHHHHHHHHHHHHHHHHhh-
Confidence            2336788899999999999999999999997521  112333457888889998555  89999999999887752111 


Q ss_pred             ccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008          541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT  619 (858)
Q Consensus       541 ~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~  619 (858)
                      .......-...++.+..++.+.++.++..++ ++..+.......  . .....+|.+..++.+.+++++..+...+..+.
T Consensus       315 ~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~--~-~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~  391 (588)
T d1b3ua_         315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--N-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVN  391 (588)
T ss_dssp             TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--H-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred             hhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh--H-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            1111111123466777888888899988887 666554322111  1 11235788999999999999998887776654


Q ss_pred             cCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHH
Q 003008          620 IIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIK  699 (858)
Q Consensus       620 ~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~  699 (858)
                      ..-......     ..-+..+.  .++.+.+|                    .                           
T Consensus       392 ~~~~~~~~~-----~~ll~~l~--~~~~d~~~--------------------~---------------------------  417 (588)
T d1b3ua_         392 EVIGIRQLS-----QSLLPAIV--ELAEDAKW--------------------R---------------------------  417 (588)
T ss_dssp             HHSCHHHHH-----HHHHHHHH--HHHTCSSH--------------------H---------------------------
T ss_pred             hhcchhhhh-----hHHHHHHH--HHHhcccH--------------------H---------------------------
Confidence            321111100     00011111  12222211                    0                           


Q ss_pred             HHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcc
Q 003008          700 LLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVV  779 (858)
Q Consensus       700 ~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~  779 (858)
                                   .+..+..++..+..          .++.........+.+..++.+++..||..|+.+|..|......
T Consensus       418 -------------~r~~~~~~l~~l~~----------~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~  474 (588)
T d1b3ua_         418 -------------VRLAIIEYMPLLAG----------QLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK  474 (588)
T ss_dssp             -------------HHHHHHHHHHHHHH----------HHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred             -------------HHHHHHHHHHHHHH----------HcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc
Confidence                         00001111111100          0000000122456677788899999999999999998754222


Q ss_pred             hhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008          780 DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL  856 (858)
Q Consensus       780 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l  856 (858)
                          .-.....++.+.+++.+++...|..++.++..+...-.  ........+|.|++++.++.|.+ ..++++|.++
T Consensus       475 ----~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~--~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i  546 (588)
T d1b3ua_         475 ----EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKI  546 (588)
T ss_dssp             ----HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence                11233456888888999999999999999988765321  12334558999999999999988 5666666543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.1e-08  Score=119.25  Aligned_cols=657  Identities=12%  Similarity=0.056  Sum_probs=327.3

Q ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC--ch
Q 003008          101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI--NV  178 (858)
Q Consensus       101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~--~~  178 (858)
                      ...++.++.+|+ +.++++|..|+++|..++..-.+   ..+  ...++.|+..+.+++...+..+..+|+.+...  ..
T Consensus        44 ~~i~~~ll~~L~-D~~~~Vq~~A~k~l~~l~~~~~~---~~~--~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~  117 (1207)
T d1u6gc_          44 RKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE---YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPA  117 (1207)
T ss_dssp             HHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH---HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCcH---hhH--HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccc
Confidence            457888999997 89999999999999999876543   222  45678888888888888888888888776321  11


Q ss_pred             ----hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHH
Q 003008          179 ----YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVL  254 (858)
Q Consensus       179 ----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L  254 (858)
                          .-........++.+...+.... ++.++..++.+|..+...-..-..-.....++.|+..+.++++.++..|+.+|
T Consensus       118 ~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l  196 (1207)
T d1u6gc_         118 SSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL  196 (1207)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                0111111224556666555542 78889999988888753211100000122466777888889999999999999


Q ss_pred             HHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHH--cCCcccccccccccccCCc
Q 003008          255 ANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIE--EGLVPVPMVGADAYKSFRP  332 (858)
Q Consensus       255 ~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~--~g~v~~~Lv~ll~~~~~~~  332 (858)
                      ..++..-...  . -...++.+++.+......  ..++.+..++..++.....+  +..  ...++ .+.+.        
T Consensus       197 ~~l~~~~~~~--~-~~~~~~~ll~~l~~~~~~--~~~~~~~~~l~~l~~~~~~~--~~~~l~~i~~-~l~~~--------  260 (1207)
T d1u6gc_         197 GHLVMSCGNI--V-FVDLIEHLLSELSKNDSM--STTRTYIQCIAAISRQAGHR--IGEYLEKIIP-LVVKF--------  260 (1207)
T ss_dssp             HHHTTTC-------CTTHHHHHHHHHHHTCSS--CSCTTHHHHHHHHHHHSSGG--GTTSCTTHHH-HHHHH--------
T ss_pred             HHHHHHCCHH--H-HHHHHHHHHHHHccCCCH--HHHHHHHHHHHHHHHHcchh--hHHHHHHHHH-HHHHH--------
Confidence            9997643211  1 123467777766543222  13455666777766521110  000  11122 12221        


Q ss_pred             cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcc-c-c-cCCCCCCCCC
Q 003008          333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAI-E-S-EDGRKPQSEF  409 (858)
Q Consensus       333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~-~-~-~~~~~~~l~~  409 (858)
                                    +...+...+..+..++..+.....+ .+.. ....++.     .+.+.-.. . . .+........
T Consensus       261 --------------l~~~~~~~r~~al~~l~~l~~~~~~-~~~~-~~~~ii~-----~~l~~l~~dp~~~~~~~~~~~~~  319 (1207)
T d1u6gc_         261 --------------CNVDDDELREYCIQAFESFVRRCPK-EVYP-HVSTIIN-----ICLKYLTYDPNYNYDDEDEDENA  319 (1207)
T ss_dssp             --------------HSSCCTTTHHHHHHHHHHHHHCTTC-CCHH-HHHHHHH-----HHTTCCCCC--------------
T ss_pred             --------------hcCccHHHHHHHHHHHHHHHHhChh-hhhh-hHHHHHH-----HHHHHHhcCcchhhhhHHHHHhh
Confidence                          1112223444455566555322211 1111 1111111     01000000 0 0 0000000000


Q ss_pred             CcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHH
Q 003008          410 PIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALE  488 (858)
Q Consensus       410 ~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~  488 (858)
                      ....  ..............-..+..+.++..++.+|..+. ..++.-..+ -...++.|+..+.+.++.+|..+..++.
T Consensus       320 ~~~~--~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~-~~~~~~~L~~~l~d~~~~vr~~~~~~l~  396 (1207)
T d1u6gc_         320 MDAD--GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREENVKADVFHAYL  396 (1207)
T ss_dssp             ------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSSHHHHHHHHHHH
T ss_pred             hhhh--ccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            0000  00000002222223334556789999999999844 444433333 3567899999999999999999998888


Q ss_pred             HhhcC--hh---------------HHHHHHH--cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccC
Q 003008          489 RLSVS--RG---------------VCQIMEA--EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPV  549 (858)
Q Consensus       489 ~Ls~~--~~---------------~~~~l~~--~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~  549 (858)
                      .+...  ..               ....+.+  ...++.+...+.+.  +..++..+..++..+....... ....  -.
T Consensus       397 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~--~~~~r~~~~~~l~~l~~~~~~~-l~~~--l~  471 (1207)
T d1u6gc_         397 SLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK--SVKTRQCCFNMLTELVNVLPGA-LTQH--IP  471 (1207)
T ss_dssp             HHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHSTTT-TGGG--HH
T ss_pred             HHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHcchH-HHHh--hH
Confidence            77531  00               0111111  12344555666644  4778888888887776411000 0000  01


Q ss_pred             cCcHHHHHhhcCCC--hhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC----
Q 003008          550 NGSEKGLDAAESLD--PSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID----  622 (858)
Q Consensus       550 ~~i~~Li~ll~s~d--~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~----  622 (858)
                      ..++.+...+....  ..++..++ ++..+..........-.-....+.++..+.+.+..++..++.++..+...-    
T Consensus       472 ~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~  551 (1207)
T d1u6gc_         472 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD  551 (1207)
T ss_dssp             HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred             hhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhc
Confidence            22445555555433  34556666 666665433322011122345677888888889999888888777664310    


Q ss_pred             ----cchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHH
Q 003008          623 ----PSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFI  698 (858)
Q Consensus       623 ----~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~  698 (858)
                          ......    ...-+..++  ..+.+.+.+.+.                .......+..++...............
T Consensus       552 ~~~~~~~~~~----~~~l~~~~~--~~l~~~~~~~e~----------------~~~al~~l~~l~~~~~~~~~~~~~~~l  609 (1207)
T d1u6gc_         552 QPSSFDATPY----IKDLFTCTI--KRLKAADIDQEV----------------KERAISCMGQIICNLGDNLGSDLPNTL  609 (1207)
T ss_dssp             SCCCCCCHHH----HHHHHHHHH--HHHSCSSSCHHH----------------HHHHHHHHHHHHHHTGGGCCTHHHHHH
T ss_pred             cchhhhhHHH----HHHHHHHHH--HHHHhcccchHH----------------HHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence                011111    011112222  222222221111                111112222222211111111111111


Q ss_pred             HHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCc
Q 003008          699 KLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGV  778 (858)
Q Consensus       699 ~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~  778 (858)
                      ..+...++   ....+......+..+.....     .....  -.....++.+...+.+.+..+|..+..+|..+.....
T Consensus       610 ~~l~~~l~---~~~~r~~a~~~l~~i~~~~~-----~~~~~--~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~  679 (1207)
T d1u6gc_         610 QIFLERLK---NEITRLTTVKALTLIAGSPL-----KIDLR--PVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS  679 (1207)
T ss_dssp             HHHHHHTT---SSSHHHHHHHHHHHHTTCSS-----CCCCH--HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhc---chhhHHHHHHHHHHHHHhcc-----chhHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcc
Confidence            11111111   11122222233333321111     01111  1123457888889999999999999999988876543


Q ss_pred             chhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcC
Q 003008          779 VDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQ  842 (858)
Q Consensus       779 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~  842 (858)
                      ........ ...++.+..++.+.+..++..+..+|..+....+....-....+++.++.++.++
T Consensus       680 ~~~~~~~~-~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~  742 (1207)
T d1u6gc_         680 DSLTAAMI-DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSP  742 (1207)
T ss_dssp             TTCCHHHH-HHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCT
T ss_pred             ccchhHHH-hhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCc
Confidence            31111111 1223444556678888999999999999987644433334456677777777654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.4e-08  Score=122.23  Aligned_cols=447  Identities=13%  Similarity=0.035  Sum_probs=247.6

Q ss_pred             cCCCcHHHHH----HHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 003008           99 FGDSYVALFV----QMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSIS  174 (858)
Q Consensus        99 ~~~g~i~~lv----~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs  174 (858)
                      .+...++.++    ..+. ++++..|..|+.+|+.++.+........+  ...++.++..+.+.++.+|..++++|..++
T Consensus       388 ~~~~il~~~l~~l~~~l~-s~~~~~reaa~~alg~i~eg~~~~~~~~l--~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~  464 (888)
T d1qbkb_         388 YRDELLPHILPLLKELLF-HHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYA  464 (888)
T ss_dssp             CCSSSHHHHHHHHHHTTT-SSSHHHHHHHHHHHHHHTTTSHHHHTTTH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHTH
T ss_pred             hHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHhhhhhhhHHHHhcccc--hhhhHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            3444555544    4555 78899999999999998875543222222  356788889999999999999999999987


Q ss_pred             cCc--hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc--chHHHHHhCCCHHHHHHHHccCCHHHHHHH
Q 003008          175 SIN--VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK--KHRLKIANTDILPLLIKSLEDENMKVKEAA  250 (858)
Q Consensus       175 ~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a  250 (858)
                      ..-  ...... -...++.++..+.+.  ++.++..|+++|.+++...  .....+  ...++.|+..+.....+.+..+
T Consensus       465 ~~~~~~~~~~~-~~~~l~~ll~~l~d~--~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~  539 (888)
T d1qbkb_         465 HWVVSQPPDTY-LKPLMTELLKRILDS--NKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLIL  539 (888)
T ss_dssp             HHHHSSCHHHH-TTTHHHHHHHHHSSS--CHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHhhhhhhhhh-hhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHH
Confidence            521  222222 235788899988887  9999999999999997322  111111  2346677788887777777777


Q ss_pred             HHHHHHHcCC---cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC--hh---hHHHHHHcCCcccccc
Q 003008          251 GGVLANLALS---KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD--DY---YRILIIEEGLVPVPMV  322 (858)
Q Consensus       251 ~~~L~nL~~~---~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~--~~---~~~~i~~~g~v~~~Lv  322 (858)
                      ..++..++..   .-.+..+.+ ..++.+.+.+..-.++.+ .......++..++..  ..   ....+.+.      ++
T Consensus       540 ~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~~------~~  611 (888)
T d1qbkb_         540 YDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQR------CV  611 (888)
T ss_dssp             HHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHHH------HH
T ss_pred             HHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHHHH------HH
Confidence            7777766532   112222222 345666665544322222 223444455544431  11   01111000      11


Q ss_pred             cccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCC
Q 003008          323 GADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDG  402 (858)
Q Consensus       323 ~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~  402 (858)
                      +++                      ..   ............-................+-.      +.....      
T Consensus       612 ~~l----------------------~~---~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------l~~~l~------  654 (888)
T d1qbkb_         612 NLV----------------------QK---TLAQAMLNNAQPDQYEAPDKDFMIVALDLLSG------LAEGLG------  654 (888)
T ss_dssp             HHH----------------------HH---HHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHH------HHHHHT------
T ss_pred             HHH----------------------HH---HHHHHHHHhcccccccchhHHHHHHHHHHHHH------HHHHhh------
Confidence            100                      00   00000000000000000000011111100000      111100      


Q ss_pred             CCCCCCCCcccccc-cccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCCcHHHH
Q 003008          403 RKPQSEFPIDRQLT-LLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVR  480 (858)
Q Consensus       403 ~~~~l~~~~~~~~~-~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~  480 (858)
                                ..+. .+.....++.+...+++.+++++..|..+++.++. ....-.... ...++.|+.-|.++...++
T Consensus       655 ----------~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~  723 (888)
T d1qbkb_         655 ----------GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVC  723 (888)
T ss_dssp             ----------TTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHH
T ss_pred             ----------hhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHH
Confidence                      0011 11122356777888999999999999999888542 222211111 2367778888888889999


Q ss_pred             HHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHh
Q 003008          481 LATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDA  558 (858)
Q Consensus       481 ~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~l  558 (858)
                      .+++++++.++.  ..+.+..+-  ..++.|+.+++.++.+..+++.++.||+.++...++.-..   .=...++.++..
T Consensus       724 ~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~---~l~~~~~~~~~~  798 (888)
T d1qbkb_         724 NNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAP---MLQQFIRPWCTS  798 (888)
T ss_dssp             HHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGG---GGGGTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHh---hHHHHHHHHHHH
Confidence            999999999986  222222221  3678888999877777889999999999987632221110   012245666666


Q ss_pred             hcC-CChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhc---CCCHHHHHHHHHHHHHhh
Q 003008          559 AES-LDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMK---TSYPDLQRKAASILEFIT  619 (858)
Q Consensus       559 l~s-~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~---s~~~~v~~~a~~~L~~l~  619 (858)
                      |.. .|.+-+..+. .++.+++.....   +.  ..++.++....   ...++++.....+|..+.
T Consensus       799 l~~~~d~~ek~~~~~g~~~~i~~~p~~---~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~  859 (888)
T d1qbkb_         799 LRNIRDNEEKDSAFRGICTMISVNPSG---VI--QDFIFFCDAVASWINPKDDLRDMFCKILHGFK  859 (888)
T ss_dssp             HTTSCCSHHHHHHHHHHHHHHHHCGGG---TG--GGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred             hccCCCcHHHHHHHHHHHHHHHHCcHH---HH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            654 4555566777 888887644422   11  22333343333   234667766666665543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.5e-10  Score=139.86  Aligned_cols=424  Identities=13%  Similarity=0.103  Sum_probs=218.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 003008          105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVA  184 (858)
Q Consensus       105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~  184 (858)
                      ..++..|. ++++.+|..+..++..++......  .   =...++.|++.+.+++...++.++.+|..++...  ...+.
T Consensus        91 ~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~~--~---Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~--~~~~~  162 (888)
T d1qbkb_          91 SECLNNIG-DSSPLIRATVGILITTIASKGELQ--N---WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS--AEILD  162 (888)
T ss_dssp             HHHTTGGG-CCCSSTTTTTTTTTHHHHTTTSSC--S---STTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGG--HHHHH
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCcc--c---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--HHHhh
Confidence            44556666 666667777766666666532221  0   1346677777777777777777888888877532  11111


Q ss_pred             h-------cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008          185 E-------CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL  257 (858)
Q Consensus       185 ~-------~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL  257 (858)
                      .       ...++.+++.++++  ++.++..++.++..+...........-...++.++....+++++++..++.+|..+
T Consensus       163 ~~~~~~~~~~ll~~ll~~~~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l  240 (888)
T d1qbkb_         163 SDVLDRPLNIMIPKFLQFFKHS--SPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVML  240 (888)
T ss_dssp             TC---CCSTTTTHHHHTGGGSS--SSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            1       23688999999987  78888888888887764322111111134677888888888889999999999888


Q ss_pred             cCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCccccccccc----ccccCCcc
Q 003008          258 ALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGAD----AYKSFRPE  333 (858)
Q Consensus       258 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll----~~~~~~~~  333 (858)
                      ......+..-.-.+.++.+++.+++.   .+.++..|...+..++..+..+..+.  ..++. ++..+    .+......
T Consensus       241 ~~~~~~~l~~~l~~i~~~~l~~~~~~---~e~v~~~a~ef~~~~~e~~~~~~~~~--~~l~~-l~~~l~~~~~~~~~~~~  314 (888)
T d1qbkb_         241 LEVRMDRLLPHMHNIVEYMLQRTQDQ---DENVALEACEFWLTLAEQPICKDVLV--RHLPK-LIPVLVNGMKYSDIDII  314 (888)
T ss_dssp             SCSCTTTTTTTTTTTTTTTTTTTTSS---CHHHHHHHHHHHCCCCSGGGGTTTTT--TSTTT-TTTTTTTSSCCSSTTHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHH-HHHHHHHHhhcchHHHH
Confidence            65433221111124455555544432   44567777776666664332221111  11221 22221    00000000


Q ss_pred             -C----CCCCCCCCcchhhccc----C-------CchhhHHHHHHhccCCCCC--CccchHHHHhhhhhhhhhhHHHHhh
Q 003008          334 -L----HSWPSLPDGTEIERTS----Q-------GPSKFGANELLLGLNVSDK--NANIDEAKMNAMVGRSRQHFLVRIG  395 (858)
Q Consensus       334 -l----~~~~~~~~~~~~~~~~----~-------~~~~~~a~~aL~nL~~~~~--~~~i~~~~~~~li~~~~~~~L~~~~  395 (858)
                       +    ......++....++..    .       ......-..-......+..  ...+...+...+..      +.   
T Consensus       315 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~------l~---  385 (888)
T d1qbkb_         315 LLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDV------LA---  385 (888)
T ss_dssp             HHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTT------TT---
T ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhh------Hh---
Confidence             0    0000000000000000    0       0000000000000000000  00000000000000      00   


Q ss_pred             cccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcC
Q 003008          396 AIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDH  474 (858)
Q Consensus       396 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~  474 (858)
                                       ..+..-.....++.+...+.++++..|+.|+.+++.++. ..+.....+ ...++.|+..+++
T Consensus       386 -----------------~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d  447 (888)
T d1qbkb_         386 -----------------NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSD  447 (888)
T ss_dssp             -----------------TTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTS
T ss_pred             -----------------hhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccC
Confidence                             000000111234555567788999999999999998653 333221111 3467889999999


Q ss_pred             CcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCc
Q 003008          475 SSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGS  552 (858)
Q Consensus       475 ~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i  552 (858)
                      +++.||..++++|+.++.  .+...... -...++.++..+.+++  ..+++.++.+|.++...   ......-.-...+
T Consensus       448 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~--~~V~~~a~~al~~l~~~---~~~~l~p~~~~il  521 (888)
T d1qbkb_         448 KKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSN--KRVQEAACSAFATLEEE---ACTELVPYLAYIL  521 (888)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSC--HHHHHHHHHHHHHHHHH---HTTSSGGGHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCC--HHHHHHHHHHHHHHHHH---hhhhhhhHHHHHH
Confidence            999999999999999875  11111111 2346778888887555  88999999999998751   1111000002235


Q ss_pred             HHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008          553 EKGLDAAESLDPSIELTGN-VIEAAV  577 (858)
Q Consensus       553 ~~Li~ll~s~d~~v~~~a~-~l~~L~  577 (858)
                      +.++..+...+........ ++..++
T Consensus       522 ~~l~~~l~~~~~~~~~~~~~al~~l~  547 (888)
T d1qbkb_         522 DTLVFAFSKYQHKNLLILYDAIGTLA  547 (888)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            5666666666655555555 565554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.3e-07  Score=117.49  Aligned_cols=437  Identities=12%  Similarity=0.037  Sum_probs=233.2

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 003008          104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLV  183 (858)
Q Consensus       104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i  183 (858)
                      +..|++-+. ++|++.|..|+.-|.+.-..+....+.-. ....++.|++.|.+.++++|..|+.+|..|...-...  .
T Consensus         5 ~~~ll~k~~-~~D~d~R~ma~~dl~~~l~~~~~~~~~~~-~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~   80 (1207)
T d1u6gc_           5 ISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDS-ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q   80 (1207)
T ss_dssp             HHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H
T ss_pred             HHHHHHhcC-CCCHhHHHHHHHHHHHHHhhcccccChHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--h
Confidence            556777776 89999999998888765432221111111 2357899999999999999999999999996643211  1


Q ss_pred             HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc----Ccch--HHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 003008          184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV----DKKH--RLKIANTDILPLLIKSLED-ENMKVKEAAGGVLAN  256 (858)
Q Consensus       184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~----~~~~--~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~n  256 (858)
                      . ...++.|+..+.+.  +...+..+..+|..+..    ....  -........++.+...+.. .+..++..++.+|..
T Consensus        81 ~-~~l~~~L~~~l~~~--~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          81 V-ETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             H-HHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCC--chhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            1 12467788877766  77778877777766531    1100  0111112233444444443 377899999999988


Q ss_pred             HcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCC
Q 003008          257 LALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHS  336 (858)
Q Consensus       257 L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~  336 (858)
                      +......-..-.....++.|+..+.+.   ...+|..|..+|..++..-...  . -...+.. +++.+           
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~---~~~vR~~A~~~l~~l~~~~~~~--~-~~~~~~~-ll~~l-----------  219 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSP---RLAVRKRTIIALGHLVMSCGNI--V-FVDLIEH-LLSEL-----------  219 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCS---SHHHHHHHHHHHHHHTTTC-------CTTHHHH-HHHHH-----------
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHH-HHHHH-----------
Confidence            864321110000112455666666554   4568999999999998642100  0 0001110 22111           


Q ss_pred             CCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccc
Q 003008          337 WPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLT  416 (858)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~  416 (858)
                                ...........+..++..                          +++....                .|.
T Consensus       220 ----------~~~~~~~~~~~~~~~l~~--------------------------l~~~~~~----------------~~~  247 (1207)
T d1u6gc_         220 ----------SKNDSMSTTRTYIQCIAA--------------------------ISRQAGH----------------RIG  247 (1207)
T ss_dssp             ----------HHTCSSCSCTTHHHHHHH--------------------------HHHHSSG----------------GGT
T ss_pred             ----------ccCCCHHHHHHHHHHHHH--------------------------HHHHcch----------------hhH
Confidence                      000000111111111111                          2221100                001


Q ss_pred             cccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhh----HHHHHHc-----------------------------
Q 003008          417 LLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHM----RMLFKEA-----------------------------  462 (858)
Q Consensus       417 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~----~~~l~~~-----------------------------  462 (858)
                      .. ....++.++..+++++++++..+..++..+. ..++.    ...++..                             
T Consensus       248 ~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~  326 (1207)
T d1u6gc_         248 EY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD  326 (1207)
T ss_dssp             TS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------------
T ss_pred             HH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccc
Confidence            10 1236788888888888889988888887733 22211    1111100                             


Q ss_pred             ---CcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCc
Q 003008          463 ---GAIKYLVKLLDHSSDAVRLATTHALERLSVS-RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSK  538 (858)
Q Consensus       463 ---g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~  538 (858)
                         ...+....-..+.+..+|..++.+|..+... ++.-..+ -...++.++..+.+.+  +.++..+..++..+.....
T Consensus       327 ~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~-~~~~~~~L~~~l~d~~--~~vr~~~~~~l~~l~~~~~  403 (1207)
T d1u6gc_         327 DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKERE--ENVKADVFHAYLSLLKQTR  403 (1207)
T ss_dssp             ---------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSS--SHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhcc
Confidence               0000001111223457899999999998773 3322222 2357888888887555  6778877777766543100


Q ss_pred             cccc---ccc-------------cccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhc
Q 003008          539 EMKS---KFY-------------DIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMK  601 (858)
Q Consensus       539 ~~~~---~~~-------------i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~  601 (858)
                      ....   ...             -.-...++.+.+.+.+.++.++..+. ++..+........... -...++.+...+.
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~-l~~~~~~i~~~l~  482 (1207)
T d1u6gc_         404 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH-IPVLVPGIIFSLN  482 (1207)
T ss_dssp             CC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHTT
T ss_pred             chhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHh-hHhhHHHHHHHHh
Confidence            0000   000             00012344566677778888888777 7777664332210111 1223456666665


Q ss_pred             C--CCHHHHHHHHHHHHHhhcCC
Q 003008          602 T--SYPDLQRKAASILEFITIID  622 (858)
Q Consensus       602 s--~~~~v~~~a~~~L~~l~~~~  622 (858)
                      .  ....++..++..+..+....
T Consensus       483 ~~~~~~~~~~~al~~l~~l~~~~  505 (1207)
T d1u6gc_         483 DKSSSSNLKIDALSCLYVILCNH  505 (1207)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             cccchhHHHHHHHHHHHHHHHhc
Confidence            4  34567888888888877643

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=4.6e-08  Score=99.47  Aligned_cols=160  Identities=13%  Similarity=0.091  Sum_probs=100.1

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA  502 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~  502 (858)
                      ....|+.+|+++++.++..|+.+|.....          ..+++.|+.+++++++.+|..|+.+|+.+.........+  
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~--   87 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV--   87 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH--
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch--
Confidence            45678899999999999999999998765          357899999999999999999999999987633322221  


Q ss_pred             cCChHHHHH-hhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008          503 EGVVHPLVN-TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET  580 (858)
Q Consensus       503 ~g~i~~Li~-lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~  580 (858)
                         ++.+.. ++.  +.+..++..+..+|.++....   .    ......++.+...+.++++.++..++ ++...    
T Consensus        88 ---~~~l~~~~l~--d~~~~vr~~a~~aL~~~~~~~---~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~----  151 (276)
T d1oyza_          88 ---FNILNNMALN--DKSACVRATAIESTAQRCKKN---P----IYSPKIVEQSQITAFDKSTNVRRATAFAISVI----  151 (276)
T ss_dssp             ---HHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHC---G----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHhc--CCChhHHHHHHHHHHHHcccc---c----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhc----
Confidence               333444 344  344788888888888876511   1    01112344555555556666655554 33221    


Q ss_pred             cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHH
Q 003008          581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEF  617 (858)
Q Consensus       581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~  617 (858)
                             .+...++.+..++...+..++..+..++..
T Consensus       152 -------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  181 (276)
T d1oyza_         152 -------NDKATIPLLINLLKDPNGDVRNWAAFAINI  181 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             -------chHHHHHHHHHhcccccchhhhhHHHHHHh
Confidence                   122334555555555555555544444433

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=5.3e-07  Score=91.35  Aligned_cols=256  Identities=14%  Similarity=0.086  Sum_probs=168.5

Q ss_pred             cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHH
Q 003008          145 SGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRL  224 (858)
Q Consensus       145 ~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~  224 (858)
                      ....+.|+++|.++++.+|..|+.+|..+...          .+++.|+++++++  ++.++..|+.+|..+........
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~~----------~~~~~l~~~l~d~--~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGGQ----------DAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH----------HHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCH----------hHHHHHHHHHcCC--CHHHHHHHHHHHHHhcccccccc
Confidence            45567889999999999999999999887531          3589999999998  99999999999999875544433


Q ss_pred             HHHhCCCHHHHHH-HHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008          225 KIANTDILPLLIK-SLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK  303 (858)
Q Consensus       225 ~i~~~g~i~~Lv~-ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~  303 (858)
                      .+     ++.+.. +++++++.++..++.+|.++........    ...++.+...+...   .+.++..++.++.....
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~---~~~vr~~a~~~l~~~~~  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDK---STNVRRATAFAISVIND  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCS---CHHHHHHHHHHHHTC--
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCc---chHHHHHHHHHHhhcch
Confidence            32     233443 4677799999999999999875433221    12345666666443   44567677666554432


Q ss_pred             ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhh
Q 003008          304 DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMV  383 (858)
Q Consensus       304 ~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li  383 (858)
                                ...++ .+..++                      ..........+..++.+....               
T Consensus       154 ----------~~~~~-~l~~l~----------------------~~~~~~~~~~~~~~~~~~~~~---------------  185 (276)
T d1oyza_         154 ----------KATIP-LLINLL----------------------KDPNGDVRNWAAFAININKYD---------------  185 (276)
T ss_dssp             -----------CCHH-HHHHHH----------------------TCSSHHHHHHHHHHHHHHTCC---------------
T ss_pred             ----------HHHHH-HHHHhc----------------------ccccchhhhhHHHHHHhhhcc---------------
Confidence                      12223 133321                      000101111122222211110               


Q ss_pred             hhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 003008          384 GRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAG  463 (858)
Q Consensus       384 ~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g  463 (858)
                                                          .....+.++..+..++..++..+..++.....          ..
T Consensus       186 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~----------~~  219 (276)
T d1oyza_         186 ------------------------------------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------KR  219 (276)
T ss_dssp             ------------------------------------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----------GG
T ss_pred             ------------------------------------ccccchhhhhhhhhhhhhhhhhhccccchhhh----------hh
Confidence                                                01245567778888999999999999988654          56


Q ss_pred             cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHH
Q 003008          464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILG  531 (858)
Q Consensus       464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~  531 (858)
                      +++.|+..+.++  .+|..++.+|+.+..          .+.++.|..++...+ +.+++..|...|.
T Consensus       220 ~~~~L~~~l~d~--~vr~~a~~aL~~ig~----------~~~~~~L~~~l~~~~-d~~vr~~A~~~L~  274 (276)
T d1oyza_         220 VLSVLCDELKKN--TVYDDIIEAAGELGD----------KTLLPVLDTMLYKFD-DNEIITSAIDKLK  274 (276)
T ss_dssp             GHHHHHHHHTSS--SCCHHHHHHHHHHCC----------GGGHHHHHHHHTTSS-CCHHHHHHHHHHT
T ss_pred             hHHHHHHHhCCh--HHHHHHHHHHHHcCC----------HHHHHHHHHHHccCC-CHHHHHHHHHHHc
Confidence            789999998754  588999999999873          347888998887443 4677877777653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=6.6e-05  Score=88.09  Aligned_cols=145  Identities=16%  Similarity=0.092  Sum_probs=93.5

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch--HHH-
Q 003008          149 NLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH--RLK-  225 (858)
Q Consensus       149 ~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~--~~~-  225 (858)
                      ..|...+.++|+.+|.+|-..|..+..++.       .+.+..|.+++.+...+..++..|+-.|.|.-.....  ... 
T Consensus         8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~   80 (861)
T d2bpta1           8 QLLENSILSPDQNIRLTSETQLKKLSNDNF-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF   80 (861)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhH
Confidence            345555678899999999999988765321       1356788888876544678888899899887532211  100 


Q ss_pred             -------HH---hCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHH
Q 003008          226 -------IA---NTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEAR  295 (858)
Q Consensus       226 -------i~---~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~  295 (858)
                             +-   ....-..+++.+.++++.++..++.++..++..+-...  .....++.|++.+.+.+  ....+..++
T Consensus        81 ~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~--~wpeli~~L~~~~~s~~--~~~~~~~al  156 (861)
T d2bpta1          81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG--AWPELMKIMVDNTGAEQ--PENVKRASL  156 (861)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT--CCHHHHHHHHHHTSTTS--CHHHHHHHH
T ss_pred             HhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHhcCCC--cHHHHHHHH
Confidence                   00   01123456777888899999999999998874321100  00124567777775542  445677888


Q ss_pred             HHHHHHhcC
Q 003008          296 NALIELAKD  304 (858)
Q Consensus       296 ~aL~nl~~~  304 (858)
                      .+|..++..
T Consensus       157 ~~l~~i~e~  165 (861)
T d2bpta1         157 LALGYMCES  165 (861)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            899888753

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=0.00011  Score=86.04  Aligned_cols=368  Identities=11%  Similarity=0.062  Sum_probs=191.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCch--hHH
Q 003008          105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSINV--YRD  181 (858)
Q Consensus       105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~~--~~~  181 (858)
                      ..++..+. ++++.+|..++.++..++..+-..  ...  ...++.|+..+.++ +...+..++.+|..++..-+  ...
T Consensus        98 ~~ll~~l~-~~~~~vr~~~a~~i~~i~~~~~p~--~~w--peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          98 TNALTALV-SIEPRIANAAAQLIAAIADIELPH--GAW--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGG--TCC--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCCc--Cch--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            45666776 778899999998888876422110  000  23456677777665 45677788888988864321  111


Q ss_pred             HHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc-h-HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008          182 LVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK-H-RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA  258 (858)
Q Consensus       182 ~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~-~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~  258 (858)
                      .+.. ...+..++..+.+...+..++..+..++.++...-. + .........++.+...+.+++++++..+..+|..++
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~  252 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIM  252 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            1111 123445555444433378899999999999764321 1 111122335677888899999999999999999987


Q ss_pred             CCcCch-HHHHhCCCHHHHHH-HHccCCCCCHHHHHHHHHHHHHHhcChhhH-HHHHHcCCcccccccccccccCCccCC
Q 003008          259 LSKSNH-NILVEAGVIPKLAM-LLKANVEGSKVIRKEARNALIELAKDDYYR-ILIIEEGLVPVPMVGADAYKSFRPELH  335 (858)
Q Consensus       259 ~~~~~~-~~i~~~g~i~~Lv~-ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~-~~i~~~g~v~~~Lv~ll~~~~~~~~l~  335 (858)
                      ...... ..... ..+..+.. ..++   ..+.++..+...+..++...... ..........  ....           
T Consensus       253 ~~~~~~~~~~l~-~~l~~l~~~~~~~---~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~-----------  315 (861)
T d2bpta1         253 SKYYTFMKPYME-QALYALTIATMKS---PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP--LQSY-----------  315 (861)
T ss_dssp             HHHGGGCHHHHH-HTHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS--CCCC-----------
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHH-----------
Confidence            542111 11111 12233322 2222   24557788888888887643222 1222211111  0000           


Q ss_pred             CCCCCCCcchhhcccCCchhhHHHHHHhccCC----CCCCcc--chHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCC
Q 003008          336 SWPSLPDGTEIERTSQGPSKFGANELLLGLNV----SDKNAN--IDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEF  409 (858)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~----~~~~~~--i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~  409 (858)
                            .   ...    .........+.+...    +.....  ........+..      +.....             
T Consensus       316 ------~---~~~----~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~-------------  363 (861)
T d2bpta1         316 ------N---FAL----SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL------FAQNCG-------------  363 (861)
T ss_dssp             ------C---HHH----HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHH------HHHHHG-------------
T ss_pred             ------H---HHH----HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH------HHhhcc-------------
Confidence                  0   000    001111111211111    111111  11111111110      111100             


Q ss_pred             CcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHH
Q 003008          410 PIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALE  488 (858)
Q Consensus       410 ~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~  488 (858)
                        ..     ......+.+...+.+++...+..++.+++.+.. .......-.-...++.++.++.++++.+|..++++++
T Consensus       364 --~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~  436 (861)
T d2bpta1         364 --NH-----ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG  436 (861)
T ss_dssp             --GG-----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             --hh-----hhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHH
Confidence              00     001133444566788899999999999999653 3322222222457889999999999999999999999


Q ss_pred             HhhcChhHHHHHHHcCChHHHHHhh-cCCCccHHHHHHHHHHHHHhcC
Q 003008          489 RLSVSRGVCQIMEAEGVVHPLVNTL-KNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       489 ~Ls~~~~~~~~l~~~g~i~~Li~lL-~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                      .++..-  ...+.....++.++..+ .....+..++..++.++..+..
T Consensus       437 ~l~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~  482 (861)
T d2bpta1         437 RIADSV--AESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE  482 (861)
T ss_dssp             HHHHHH--GGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh--chhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHH
Confidence            987521  01111223344333322 1112235667777777666543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=7.4e-06  Score=86.60  Aligned_cols=349  Identities=13%  Similarity=0.089  Sum_probs=211.4

Q ss_pred             CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHH--HHHHhcC--cHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 003008          100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCID--YIMQFSG--CINLTVNLLRSESSAACEAAAGLLRSISS  175 (858)
Q Consensus       100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~--~ii~~~g--~i~~Li~lL~~~~~~~~~~a~~aL~nLs~  175 (858)
                      +..++..++++|+..+..++..+.+..+-.|-.+++....  ....+..  .-+.+..++.+++.-....+...+..++.
T Consensus        72 g~~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~  151 (477)
T d1ho8a_          72 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  151 (477)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             ccHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence            4567889999998667777888877777666554442211  1121111  23444555555555566667777777766


Q ss_pred             CchhHHHHHh--cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH--hCCCHHHHHHHHccC---------
Q 003008          176 INVYRDLVAE--CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA--NTDILPLLIKSLEDE---------  242 (858)
Q Consensus       176 ~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~---------  242 (858)
                      .........+  ......+-.+....  +......++.+|..+...+..|..+.  +...+++|+..|+..         
T Consensus       152 ~~~~~~~~~e~l~~~~~~l~~l~~~~--~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~  229 (477)
T d1ho8a_         152 NGLHNVKLVEKLLKNNNLINILQNIE--QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI  229 (477)
T ss_dssp             TTTCCHHHHHHHHHCHHHHHHHHCTT--CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             ccccccchHHHHHHhhHHHHHhhccc--ccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchh
Confidence            4422111111  11122333344555  77888888999999999999998876  445678888877531         


Q ss_pred             --------CHHHHHHHHHHHHHHcCCcCchHHHHhCC--CHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh--h----
Q 003008          243 --------NMKVKEAAGGVLANLALSKSNHNILVEAG--VIPKLAMLLKANVEGSKVIRKEARNALIELAKDD--Y----  306 (858)
Q Consensus       243 --------~~~~~~~a~~~L~nL~~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~--~----  306 (858)
                              ...++.+++-+++-|++.++....+.+.+  .++.|+++++...  -+++.+.++.+|.|++..+  .    
T Consensus       230 ~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~--KEKvvRv~l~~l~Nll~~~~~~~~~~  307 (477)
T d1ho8a_         230 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI--KEKVSRLCISIILQCCSTRVKQHKKV  307 (477)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred             hcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence                    23568899999999999988888887764  4899999887642  3557788999999998742  1    


Q ss_pred             hHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhh
Q 003008          307 YRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRS  386 (858)
Q Consensus       307 ~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~  386 (858)
                      ....++..++++  ++..+..+...                   + +...+....|...-         +..++.+-.  
T Consensus       308 ~~~~~v~~~~l~--~l~~L~~r~~~-------------------D-edl~edl~~L~~~L---------~~~~k~lTs--  354 (477)
T d1ho8a_         308 IKQLLLLGNALP--TVQSLSERKYS-------------------D-EELRQDISNLKEIL---------ENEYQELTS--  354 (477)
T ss_dssp             HHHHHHHHCHHH--HHHHHHSSCCS-------------------S-HHHHHHHHHHHHHH---------HHHHHTCCH--
T ss_pred             HHHHHHHcchhH--HHHHHhcCCCC-------------------C-HHHHHHHHHHHHHH---------HHHHHhcCc--
Confidence            234466666666  45544222111                   1 11111111111110         000000000  


Q ss_pred             hhhHH--HHhhcccccCCCCCCCCCCccccc-----ccccccc--cHHHHHHHhC----------CCCHHHHHHHHHHHH
Q 003008          387 RQHFL--VRIGAIESEDGRKPQSEFPIDRQL-----TLLPWID--GVARLVLILG----------LEDERAIARAAESIA  447 (858)
Q Consensus       387 ~~~~L--~~~~~~~~~~~~~~~l~~~~~~~~-----~~l~~~~--~i~~Lv~lL~----------~~~~~v~~~a~~aL~  447 (858)
                      =.++.  +.+|..+       =.-.+.+..|     ..+-..+  .+..|+.+|+          +.|+.+..-||.=++
T Consensus       355 fd~Y~~Ev~Sg~L~-------WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiG  427 (477)
T d1ho8a_         355 FDEYVAELDSKLLC-------WSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDIT  427 (477)
T ss_dssp             HHHHHHHHHHTCCC-------CCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCC-------CCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHH
Confidence            00000  0011000       0000111112     1122222  6889999995          457888999999999


Q ss_pred             Hhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008          448 DIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV  492 (858)
Q Consensus       448 ~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~  492 (858)
                      ... ..|+.|..+-+.|+=..++.|+.+++++||.+|..|+..+-.
T Consensus       428 efvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         428 HVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            955 688889888899999999999999999999999999988753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=6.7e-06  Score=86.92  Aligned_cols=326  Identities=12%  Similarity=0.079  Sum_probs=187.1

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-hhhHHHHH-HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISIN-EHMRMLFK-EAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIM  500 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~l~-~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l  500 (858)
                      ...++..+++.++..+...++..+..++.. .......- .......+-.+....+...+.-++.+|..|...++.|..+
T Consensus       123 ~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~f  202 (477)
T d1ho8a_         123 LEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVI  202 (477)
T ss_dssp             HHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             hhHHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHH
Confidence            345667778878888888888888885432 22211110 1112344445556778888888999999999999999988


Q ss_pred             HH--cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHh-hcCCChhHHHHHH-HHHHh
Q 003008          501 EA--EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDA-AESLDPSIELTGN-VIEAA  576 (858)
Q Consensus       501 ~~--~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~l-l~s~d~~v~~~a~-~l~~L  576 (858)
                      .+  ...++.|+++|+......                              +...++.- -+..+...+..++ ++.-|
T Consensus       203 w~~~~~~~~~l~~il~~a~~~~------------------------------~~~~~~~~~~~~~~~Ql~Y~~ll~lWlL  252 (477)
T d1ho8a_         203 WLHEKKFMPTLFKILQRATDSQ------------------------------LATRIVATNSNHLGIQLQYHSLLLIWLL  252 (477)
T ss_dssp             HTTHHHHHHHHHHHHHHHHC-------------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred             HHcccchHHHHHHHHHHHhccc------------------------------ccchhhcccCCCccHHHHHHHHHHHHHH
Confidence            64  346777777775211000                              00000000 0011223344444 44444


Q ss_pred             hccccchhhhHhhc--cchhHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcc--hHHHHhhchHHHHHHHHHhhhccCCCC
Q 003008          577 VSETTTSYGKVLDS--VFIGRMIGIMK-TSYPDLQRKAASILEFITIIDPS--MDTIISADIESGLDAIFQQKALEDTDS  651 (858)
Q Consensus       577 ~~~~~~~~~~i~~~--g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~gl~~l~~~~iL~~~~~  651 (858)
                      ..+.... ..+.+.  +.|+.|+++++ +.-..+.+-++.+|.|+......  ...+.......++-.++  ..|....|
T Consensus       253 SF~~~~~-~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l--~~L~~r~~  329 (477)
T d1ho8a_         253 TFNPVFA-NELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTV--QSLSERKY  329 (477)
T ss_dssp             TTSHHHH-HHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHH--HHHHSSCC
T ss_pred             HcCHHHH-HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHH--HHHhcCCC
Confidence            4444443 444443  45888888886 55667999999999999865332  11111111233334555  66778888


Q ss_pred             CcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCch--hhHHHHHHHhhcccCC
Q 003008          652 DIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHY--KDWVAACLVKLSCLSG  729 (858)
Q Consensus       652 ~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~l~~l~~~~~  729 (858)
                      ++++..+|+..|.-        .-......+-+|+++....        ...-+ .+.|.+.  +-|-+.+ .++     
T Consensus       330 ~Dedl~edl~~L~~--------~L~~~~k~lTsfd~Y~~Ev--------~Sg~L-~WSP~H~se~FW~EN~-~kf-----  386 (477)
T d1ho8a_         330 SDEELRQDISNLKE--------ILENEYQELTSFDEYVAEL--------DSKLL-CWSPPHVDNGFWSDNI-DEF-----  386 (477)
T ss_dssp             SSHHHHHHHHHHHH--------HHHHHHHTCCHHHHHHHHH--------HHTCC-CCCGGGGCHHHHHHHS-GGG-----
T ss_pred             CCHHHHHHHHHHHH--------HHHHHHHhcCcHHHHHHHH--------hcCCC-CCCCCcCChhHHHHHH-Hhh-----
Confidence            77655444333210        0011122344455543211        11111 2334432  3333321 111     


Q ss_pred             CCCCCCccchhhhhhhcchHHHHHHhc----------cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhh
Q 003008          730 PDQDFENPINMEVTLYEAIPRLIEQIK----------SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIE  799 (858)
Q Consensus       730 ~~~~~~~~~~~~i~~~~~i~~Lv~lL~----------~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~  799 (858)
                               .  .-+...+..|+++|.          +.++.+..-||-=++.++...+. ....+-+.|+=..+++++.
T Consensus       387 ---------~--e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~-gr~il~~lg~K~~vM~Lm~  454 (477)
T d1ho8a_         387 ---------K--KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-SIDVLDKTGGKADIMELLN  454 (477)
T ss_dssp             ---------S--SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHSHHHHHHHHTS
T ss_pred             ---------c--ccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc-hhHHHHHcCcHHHHHHHhc
Confidence                     1  013345899999996          45778888888899998887765 5557778888888899999


Q ss_pred             cCChHHHHHHHHHHHhh
Q 003008          800 EGSNRAVEAGLAILYNL  816 (858)
Q Consensus       800 ~~~~~v~~~a~~aL~nL  816 (858)
                      +++++||..|+.|+-.|
T Consensus       455 h~d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         455 HSDSRVKYEALKATQAI  471 (477)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998554

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=0.00083  Score=78.63  Aligned_cols=365  Identities=12%  Similarity=0.017  Sum_probs=193.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCchhHH
Q 003008          104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSINVYRD  181 (858)
Q Consensus       104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~~~~~  181 (858)
                      ...++..+. +++ .++..++.++..++..+-..  ..  =.+.++.|++.+.++  +...+..++.+|..++..-.. .
T Consensus        92 k~~ll~~l~-~~~-~~~~~~a~~i~~i~~~~~p~--~~--Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~-~  164 (876)
T d1qgra_          92 KNYVLHTLG-TET-YRPSSASQCVAGIACAEIPV--NQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP-E  164 (876)
T ss_dssp             HHHHHHHTT-TCC-SSSCHHHHHHHHHHHHHGGG--TC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH-H
T ss_pred             HHHHHHHhc-CCc-HHHHHHHHHHHHHHHHHCCc--cc--cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH-H
Confidence            355677776 544 34555666776666432110  00  146788899888765  467788888888888642111 1


Q ss_pred             HHHh--cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchH--HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008          182 LVAE--CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR--LKIANTDILPLLIKSLEDENMKVKEAAGGVLANL  257 (858)
Q Consensus       182 ~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL  257 (858)
                      .+..  ...++.++..+.+...+..++..+..++.+....-...  ......-.++.+...+.+++++++..++.+|..+
T Consensus       165 ~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l  244 (876)
T d1qgra_         165 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI  244 (876)
T ss_dssp             HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            1111  23578888887765336788998999888875322111  1111112356677778888999999999999998


Q ss_pred             cCCcC-chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhH-H---HHHHcCCcccccccccccccCCc
Q 003008          258 ALSKS-NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYR-I---LIIEEGLVPVPMVGADAYKSFRP  332 (858)
Q Consensus       258 ~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~-~---~i~~~g~v~~~Lv~ll~~~~~~~  332 (858)
                      ..... .-.........+.+...+++.   .+.++..+...+..++...... .   .....+..+. ....        
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~--------  312 (876)
T d1qgra_         245 MSLYYQYMETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE-HTSK--------  312 (876)
T ss_dssp             HHHSGGGCHHHHTTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS-SCCC--------
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHH-HHHH--------
Confidence            75422 111222223344455555443   3446666777666666532111 0   0111111110 0000        


Q ss_pred             cCCCCCCCCCcchhhcccCCchhhHHHHHHhcc-CCCCC-----CccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCC
Q 003008          333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGL-NVSDK-----NANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQ  406 (858)
Q Consensus       333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL-~~~~~-----~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~  406 (858)
                                  ....    .........+... ...+.     ...+..++...+..      +.....          
T Consensus       313 ------------~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~------l~~~~~----------  360 (876)
T d1qgra_         313 ------------FYAK----GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML------LATCCE----------  360 (876)
T ss_dssp             ------------CHHH----HHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHH------HHHHHG----------
T ss_pred             ------------HHHH----HHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHH------HHHHhh----------
Confidence                        0000    0011111112111 11110     00122222111111      111110          


Q ss_pred             CCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHH
Q 003008          407 SEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH  485 (858)
Q Consensus       407 l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~  485 (858)
                               .. .....++.+...+.++++..+..++.+++.+.. .......-.-...++.+...+.++++.||..+++
T Consensus       361 ---------~~-~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~  430 (876)
T d1qgra_         361 ---------DD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAW  430 (876)
T ss_dssp             ---------GG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             ---------hh-hhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence                     00 001244556677788999999999999988553 3332223333567889999999999999999999


Q ss_pred             HHHHhhc-ChhHHHHHHHcCC----hHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008          486 ALERLSV-SRGVCQIMEAEGV----VHPLVNTLKNLDISESLMEKTLDILGRILD  535 (858)
Q Consensus       486 aL~~Ls~-~~~~~~~l~~~g~----i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~  535 (858)
                      +++.++. .+..   ......    ++.+...+.   .+..++..+++++.++..
T Consensus       431 ~l~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~---~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         431 TVGRICELLPEA---AINDVYLAPLLQCLIEGLS---AEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHCGGG---TSSTTTHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcchh---hhhHHHhhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHH
Confidence            9999986 2211   011122    334444443   236788888888888764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=0.00011  Score=79.00  Aligned_cols=380  Identities=11%  Similarity=0.013  Sum_probs=213.2

Q ss_pred             CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcC-ch-hHHHHH-----
Q 003008          114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSI-NV-YRDLVA-----  184 (858)
Q Consensus       114 s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~-~~-~~~~i~-----  184 (858)
                      ++|.++|..|-..|..+...+.         .+.+..|..++.+.  +..+|..|+..|+|.-.. .. .+....     
T Consensus        11 s~d~~~r~~A~~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~   81 (458)
T d1ibrb_          11 SPDRLELEAAQKFLERAAVENL---------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA   81 (458)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhcc
Confidence            6888999999888886664211         34556777877654  567888888888877542 22 111111     


Q ss_pred             -----hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHH
Q 003008          185 -----ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGVLANL  257 (858)
Q Consensus       185 -----~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~nL  257 (858)
                           .......+++.+.++  ++. ++.++.++..++.......  .-.+.++.++..+.++  +...+..++.++..+
T Consensus        82 l~~~~~~~i~~~ll~~~~~~--~~~-~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  156 (458)
T d1ibrb_          82 IDANARREVKNYVLQTLGTE--TYR-PSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYI  156 (458)
T ss_dssp             SCHHHHHHHHHHHHHHTTCC--CSS-SCSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccCCC--cHH-HHHHHHHHHHHHHHhCCcc--cCcchhHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence                 122345566766665  332 3334444444432111100  0135678888888664  567788888888887


Q ss_pred             cCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCC
Q 003008          258 ALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHS  336 (858)
Q Consensus       258 ~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~  336 (858)
                      +....... .-.-...++.++..+.+... +..++..+..++.++.....                ..            
T Consensus       157 ~~~~~~~~~~~~~~~il~~~~~~l~~~~~-~~~v~~~a~~~l~~~~~~~~----------------~~------------  207 (458)
T d1ibrb_         157 CQDIDPEQLQDKSNEILTAIIQGMRKEEP-SNNVKLAATNALLNSLEFTK----------------AN------------  207 (458)
T ss_dssp             HHHSCGGGTGGGHHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHTTTTH----------------HH------------
T ss_pred             HhhccchhhhhhHHHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHHhhh----------------hh------------
Confidence            64322111 11112345666666654322 34456666666555543210                00            


Q ss_pred             CCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccc
Q 003008          337 WPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLT  416 (858)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~  416 (858)
                                                  .  ..      + .            .                         
T Consensus       208 ----------------------------~--~~------~-~------------~-------------------------  213 (458)
T d1ibrb_         208 ----------------------------F--DK------E-S------------E-------------------------  213 (458)
T ss_dssp             ----------------------------H--TS------H-H------------H-------------------------
T ss_pred             ----------------------------h--hh------H-H------------H-------------------------
Confidence                                        0  00      0 0            0                         


Q ss_pred             cccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChh
Q 003008          417 LLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRG  495 (858)
Q Consensus       417 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~  495 (858)
                         .....+.+..++.+++++++..++.+|..+. ..++.-.........+.+...+.+.++.++..+...+..++....
T Consensus       214 ---~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~  290 (458)
T d1ibrb_         214 ---RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM  290 (458)
T ss_dssp             ---HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence               0002344556778888999999999998853 232221111122234445666778889999999888888764211


Q ss_pred             HHH---------------------HHHHcCChHHHHHhhcCC-----CccHHHHHHHHHHHHHhcCCCcccccccccccC
Q 003008          496 VCQ---------------------IMEAEGVVHPLVNTLKNL-----DISESLMEKTLDILGRILDPSKEMKSKFYDIPV  549 (858)
Q Consensus       496 ~~~---------------------~l~~~g~i~~Li~lL~~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~  549 (858)
                      ...                     ...-...++.+...+...     +.+..++..+..++..++....+.     +. .
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-----~~-~  364 (458)
T d1ibrb_         291 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----IV-P  364 (458)
T ss_dssp             HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-----HH-H
T ss_pred             HHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-----hh-h
Confidence            000                     000011233444444321     122346777888887776511111     10 1


Q ss_pred             cCcHHHHHhhcCCChhHHHHHH-HHHHhhccccc-hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008          550 NGSEKGLDAAESLDPSIELTGN-VIEAAVSETTT-SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI  620 (858)
Q Consensus       550 ~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~-~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~  620 (858)
                      ..++.+...+.++++.++..++ ++..++..... .... .-...+|.++++++++++.||..|+++|+.++.
T Consensus       365 ~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         365 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            1345566777888999998888 88887743211 1011 123568999999999999999999999999864

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=0.00019  Score=77.15  Aligned_cols=307  Identities=12%  Similarity=0.089  Sum_probs=161.3

Q ss_pred             cCcHHHHHHhhcCC--cHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCc
Q 003008          462 AGAIKYLVKLLDHS--SDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSK  538 (858)
Q Consensus       462 ~g~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~  538 (858)
                      .+.++.|...+.++  +..++..+..++..+.. .......-.-...++.++..+...+.+..++..+..++.++.....
T Consensus       126 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         126 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             cchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence            35788888887653  47788888888888765 1111110011224677777887666668899999999998876221


Q ss_pred             ccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHH
Q 003008          539 EMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEF  617 (858)
Q Consensus       539 ~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~  617 (858)
                      ... ..........+.+..++.+++++++..++ ++..++................+.+...+.+.+..++..++..+..
T Consensus       206 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~  284 (458)
T d1ibrb_         206 ANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN  284 (458)
T ss_dssp             HHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             hhh-hhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            111 00111112355677788889999999988 8888775443221111222233445666778888999988888877


Q ss_pred             hhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHH
Q 003008          618 ITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHF  697 (858)
Q Consensus       618 l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~  697 (858)
                      ++.........           ..  ......      ..............  .....+.+...+..........    
T Consensus       285 i~~~~~~~~~~-----------~~--~~~~~~------~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~----  339 (458)
T d1ibrb_         285 VCDEEMDLAIE-----------AS--EAAEQG------RPPEHTSKFYAKGA--LQYLVPILTQTLTKQDENDDDD----  339 (458)
T ss_dssp             HHHHHHHHHHH-----------HC--CTTCSS------SCSSCCCCCHHHHH--HHHHHHHHHHHTTCCCSSCCTT----
T ss_pred             HHHHHHHHHHh-----------hh--hHHHhh------hHHHHHHHHHHHHH--HHHHhhhHHhhhhcchhhhccc----
Confidence            75322111000           00  000000      00000000000000  0000111111111100000000    


Q ss_pred             HHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcC
Q 003008          698 IKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEG  777 (858)
Q Consensus       698 ~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~  777 (858)
                                  ..........++..+..          ..+..+ ....++.+.+.++++++.+|++|+.+|+.++...
T Consensus       340 ------------~~~~~~~a~~~l~~l~~----------~~~~~~-~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~  396 (458)
T d1ibrb_         340 ------------DWNPCKAAGVCLMLLAT----------CCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP  396 (458)
T ss_dssp             ------------CCSHHHHHHHHHHHHHH----------HTTTTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred             ------------cccHHHHHHHHHHHHHH----------hccHhh-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence                        00001111112222111          000001 1124566667788999999999999999887543


Q ss_pred             cchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhc
Q 003008          778 VVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSM  818 (858)
Q Consensus       778 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~  818 (858)
                      ..+.... .-...++.|+..++++++.||..|+.+|.+++.
T Consensus       397 ~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         397 EPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             CTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             CHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            2212111 123456889999999999999999999999864

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.86  E-value=1.3e-05  Score=68.75  Aligned_cols=88  Identities=20%  Similarity=0.215  Sum_probs=74.4

Q ss_pred             cchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHH
Q 003008          746 EAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSA  825 (858)
Q Consensus       746 ~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~  825 (858)
                      .++++|+..|+++++.+|..|+.+|.++...            +.++.|+++|+++++.||..|+.+|..+..       
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~------------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~-------   82 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------   82 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh------------hhHHHHHhhhccchhHHHHHHHHHHHHhCc-------
Confidence            4689999999999999999999999775422            235899999999999999999999987742       


Q ss_pred             HHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008          826 IIAAGAVPALRRIVLSQRPQW-TRALRLLRN  855 (858)
Q Consensus       826 i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~  855 (858)
                         .++++.|..++.++++.+ ..|+.+|.+
T Consensus        83 ---~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          83 ---ERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             ---HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence               345788999999999999 888888865

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.78  E-value=1.3e-05  Score=68.60  Aligned_cols=87  Identities=24%  Similarity=0.207  Sum_probs=73.9

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008          423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA  502 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~  502 (858)
                      .++.|+.+|+++++.++..|+++|+++..          .++++.|..+|+++++.||..|+++|+.+..          
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~----------   82 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------   82 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc----------
Confidence            68899999999999999999999998765          4578999999999999999999999999863          


Q ss_pred             cCChHHHHHhhcCCCccHHHHHHHHHHHH
Q 003008          503 EGVVHPLVNTLKNLDISESLMEKTLDILG  531 (858)
Q Consensus       503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~  531 (858)
                      .+.++.|..++.+++  ..+++.|..+|.
T Consensus        83 ~~~~~~L~~ll~d~~--~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ERVRAAMEKLAETGT--GFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHHHTTSCC--THHHHHHHHHGG
T ss_pred             cchHHHHHHHHcCCC--HHHHHHHHHHHH
Confidence            235788888888554  788988887763

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.03  Score=64.73  Aligned_cols=193  Identities=12%  Similarity=0.123  Sum_probs=108.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch------
Q 003008          105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV------  178 (858)
Q Consensus       105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~------  178 (858)
                      +.+...+. +++++++..+..+|..+...-.......+ .....+.+.....+.+++++..+...+..++....      
T Consensus       220 ~~l~~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  297 (876)
T d1qgra_         220 QVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA  297 (876)
T ss_dssp             HHHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445565 77888999999998888754333222233 23455556666667777766666655544432100      


Q ss_pred             ----------------------------------------------hHHH-------H---HhcCcHHH----HHHHhcC
Q 003008          179 ----------------------------------------------YRDL-------V---AECGAIEE----ITGLLTR  198 (858)
Q Consensus       179 ----------------------------------------------~~~~-------i---~~~g~i~~----Lv~lL~~  198 (858)
                                                                    .+..       +   ....+++.    +.+.+.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~  377 (876)
T d1qgra_         298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN  377 (876)
T ss_dssp             HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcc
Confidence                                                          0000       0   00112233    2334444


Q ss_pred             CCCCHHHHHHHHHHHHHhccCcch-HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHH
Q 003008          199 PSLTSEVKEQSMCTLWNLSVDKKH-RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLA  277 (858)
Q Consensus       199 ~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv  277 (858)
                      +  +...++.+...+..+...... ...-.....++.++..+.++++.++..+++++..++.....  .......++.++
T Consensus       378 ~--~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~~~  453 (876)
T d1qgra_         378 P--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE--AAINDVYLAPLL  453 (876)
T ss_dssp             S--SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG--GTSSTTTHHHHH
T ss_pred             c--hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcch--hhhhHHHhhhHH
Confidence            4  667777777777777644322 21222234578888899999999999999999998753211  111123344444


Q ss_pred             HHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008          278 MLLKANVEGSKVIRKEARNALIELAK  303 (858)
Q Consensus       278 ~ll~~~~~~~~~~~~~a~~aL~nl~~  303 (858)
                      ..+...-.+.+.++..++.++.+++.
T Consensus       454 ~~l~~~l~~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         454 QCLIEGLSAEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            43322222246677888888888764

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.10  E-value=0.0033  Score=60.52  Aligned_cols=149  Identities=11%  Similarity=0.081  Sum_probs=75.7

Q ss_pred             cHHHHHHHhCCCCHHHHHHHHHHHHH-----hcC--ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChh
Q 003008          423 GVARLVLILGLEDERAIARAAESIAD-----ISI--NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRG  495 (858)
Q Consensus       423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~-----l~~--~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~  495 (858)
                      .+..|..|+++++++|+..++..|..     +..  +.+.|..+...=..+.|..++++++..||..++.          
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~----------  136 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQ----------  136 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHh----------
Confidence            45567788999999999998876532     111  2233333333333445555555555555555443          


Q ss_pred             HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HH-
Q 003008          496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VI-  573 (858)
Q Consensus       496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l-  573 (858)
                             ....+.|..++++++  .+++..++.   ++                 +.+.+..+++++++.|+..+. .+ 
T Consensus       137 -------~~~~~~L~~L~~D~d--~~VR~~aA~---~~-----------------~~~~L~~l~~D~d~~VR~~aa~~L~  187 (233)
T d1lrva_         137 -------RIPPGRLFRFMRDED--RQVRKLVAK---RL-----------------PEESLGLMTQDPEPEVRRIVASRLR  187 (233)
T ss_dssp             -------HSCGGGGGGTTTCSC--HHHHHHHHH---HS-----------------CGGGGGGSTTCSSHHHHHHHHHHCC
T ss_pred             -------ccchhHHHHHhcCCC--HHHHHHHHH---hc-----------------CHHHHHHHccCCCHHHHHHHHHhcC
Confidence                   223344555555333  666655443   11                 133455556666666665554 21 


Q ss_pred             ----HHhhccccc--hhhhHhhccchhHHHHhhcCCCHHHHHHHH
Q 003008          574 ----EAAVSETTT--SYGKVLDSVFIGRMIGIMKTSYPDLQRKAA  612 (858)
Q Consensus       574 ----~~L~~~~~~--~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~  612 (858)
                          ..+..+.+.  | ..+.+. ..+.+++.|.++++.|+..++
T Consensus       188 ~~~L~~l~~D~d~~VR-~aaae~-~~~~ll~~L~D~d~~VR~aA~  230 (233)
T d1lrva_         188 GDDLLELLHDPDWTVR-LAAVEH-ASLEALRELDEPDPEVRLAIA  230 (233)
T ss_dssp             GGGGGGGGGCSSHHHH-HHHHHH-SCHHHHHHCCCCCHHHHHHHH
T ss_pred             cHHHHHHHhCCCHHHH-HHHHHh-ccHHHHHHhCCCCHHHHHHHH
Confidence                112222111  1 122222 224556666777777776654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.27  E-value=0.013  Score=56.05  Aligned_cols=144  Identities=15%  Similarity=0.104  Sum_probs=74.4

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHH-----HHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHH-----HHHh
Q 003008          104 VALFVQMLGLDYDPLDREQAVEAL-----WKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGL-----LRSI  173 (858)
Q Consensus       104 i~~lv~lL~~s~d~~~~~~a~~~L-----~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~a-----L~nL  173 (858)
                      +..|..+++ ++|+.||..++..|     ..+..+++..++..+...=..+.|..++.+++..+|..++..     |..+
T Consensus        68 ~~~L~~Ll~-D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L  146 (233)
T d1lrva_          68 VEALTPLIR-DSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRF  146 (233)
T ss_dssp             GGGGGGGTT-CSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGT
T ss_pred             HHHHHHHhc-CCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHH
Confidence            344666776 77778887776543     233333332221221111123455666777777777766543     2333


Q ss_pred             hcCc--hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHH-----HHhccCcc--hHHHHHhCCCHHHHHHHHccCCH
Q 003008          174 SSIN--VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTL-----WNLSVDKK--HRLKIANTDILPLLIKSLEDENM  244 (858)
Q Consensus       174 s~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L-----~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~  244 (858)
                      ..++  +.|..+...-+.+.|..+++++  ++.++..++..|     ..|..+++  .|...++. ..+.+++.|..+++
T Consensus       147 ~~D~d~~VR~~aA~~~~~~~L~~l~~D~--d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~  223 (233)
T d1lrva_         147 MRDEDRQVRKLVAKRLPEESLGLMTQDP--EPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELDEPDP  223 (233)
T ss_dssp             TTCSCHHHHHHHHHHSCGGGGGGSTTCS--SHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCH
T ss_pred             hcCCCHHHHHHHHHhcCHHHHHHHccCC--CHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCH
Confidence            3322  3566665555566666677766  777777666543     23333322  23333333 22445555555566


Q ss_pred             HHHHHHH
Q 003008          245 KVKEAAG  251 (858)
Q Consensus       245 ~~~~~a~  251 (858)
                      .|++.++
T Consensus       224 ~VR~aA~  230 (233)
T d1lrva_         224 EVRLAIA  230 (233)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665554

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.00  E-value=5.3  Score=38.53  Aligned_cols=208  Identities=11%  Similarity=0.095  Sum_probs=131.7

Q ss_pred             HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc--cccccccCcCcHHHHHhhc-CCChhHHHHHH-HH
Q 003008          498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK--SKFYDIPVNGSEKGLDAAE-SLDPSIELTGN-VI  573 (858)
Q Consensus       498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~i~~~~~i~~Li~ll~-s~d~~v~~~a~-~l  573 (858)
                      ..+.+.+.+..|+..|..-+  .+.++-++.+..++........  ...++...  -+.+..++. .+++++...+- .|
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~--fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mL  138 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLID--FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIML  138 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSC--HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCC--CchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHH
Confidence            34556788888988887444  8899999999999987322111  11122211  122222222 24566666666 67


Q ss_pred             HHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCc
Q 003008          574 EAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDI  653 (858)
Q Consensus       574 ~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~  653 (858)
                      +.++..+... ..+.....+..+.+....++=+|..-|..++..+....+.   ++                        
T Consensus       139 REcik~e~la-k~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~---~~------------------------  190 (330)
T d1upka_         139 RECIRHEPLA-KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKL---LS------------------------  190 (330)
T ss_dssp             HHHHTSHHHH-HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHH---HH------------------------
T ss_pred             HHHHhhHHHH-HHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHH---HH------------------------
Confidence            7777666655 6777777778888888888877777776666555331110   00                        


Q ss_pred             CCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCC
Q 003008          654 EGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQD  733 (858)
Q Consensus       654 ~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~  733 (858)
                                                   ..|                   +.       .                   
T Consensus       191 -----------------------------aef-------------------l~-------~-------------------  196 (330)
T d1upka_         191 -----------------------------AEF-------------------LE-------Q-------------------  196 (330)
T ss_dssp             -----------------------------HHH-------------------HH-------H-------------------
T ss_pred             -----------------------------HHH-------------------HH-------H-------------------
Confidence                                         000                   00       0                   


Q ss_pred             CCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhh--HHHHhcCCchHHHHHhhcCChHHHHHHHH
Q 003008          734 FENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDST--RAVASEGGIFPLVKLIEEGSNRAVEAGLA  811 (858)
Q Consensus       734 ~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~--~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~  811 (858)
                        +       -......+.++|.++|.-+|.++..-|+.+..+...-..  +++.+..-+..++.+|++.+..+|.+|-.
T Consensus       197 --N-------yd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFh  267 (330)
T d1upka_         197 --H-------YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFH  267 (330)
T ss_dssp             --T-------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             --h-------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhh
Confidence              0       000234455788999999999999999999876543222  25666777788899999999999999988


Q ss_pred             HHHhhhcCc
Q 003008          812 ILYNLSMDS  820 (858)
Q Consensus       812 aL~nL~~~~  820 (858)
                      +.--...++
T Consensus       268 VFKvFVANp  276 (330)
T d1upka_         268 VFKVFVANP  276 (330)
T ss_dssp             HHHHHHHCS
T ss_pred             HhhhhhcCC
Confidence            776555443