Citrus Sinensis ID: 003012

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------
MKSSTTSANCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLPTSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNNSKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSINQGRNNVAIRYNRAGIYVTHPSRAFRDEEGRNFWVEIEIVDEYRFPSGSQAPYNVTTTLLVPGNYQGERRIKQSQIFARRGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLVILRPQEAMPLPSFSRNTDL
ccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEcccccccEEEEcccccEEEEEEcccccccccccEEcccccccccEEEEccccccEEEEEEccccEEEEEEccccEEEEEEEEccEEEEcccccccccccccccccccccccEEEcccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccEEccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEccccEEEEEEEEccccccccEEEEccccccccEEEEEEcccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccccccccccccccccEEEEccccccccEEEEEcccEEEEEccccEEEccEEEccccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEccccccccEEEEccccccccEEEEcccccEEEEEcccccccccEEEEccccccccEEEEEccccccccccEEEEEEccccEEEEEccccccEEEEEcccccEEEEEEEEccccccccEEEEEcccEEEEEEccccccccccccccccccccEEEEcccccEEEccccccccccccccEEEEEEEEEcccccccccccEEEEEEEEccccccccEEEEEEEEEcccccEEEEEEccccccccEEEEEEEcccccEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccc
cccccccHHHHHHHHHHHEccccccccccccccHccccccHHcccccccHHHHHcccccccEEEEEEEEEccccccccEEEEEcccccEEEEEEcccEEEEEEEcccccccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEccccEcccEEEcccccccccccccccccccccccccccccHHHHHccHEEcccccccccccccccccEEEccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccEEEEcccccccccccccccHcccHHHcccHcccccHHHHHHHccccHHHcccccccccccEEEcccEccccEEEEEccccccEEEEEEEEEEcccHcccccHHHHcccccccccEcccEEEEEcccccEEEEEEEEcccccccccEEEEcccEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccccccEEEEEccccccEEEEEEccccEEEEEEccccEEEEcccccccccccEEEEccccccEEEEEEccccEEEEEEcccccccccccccccccccccEEEEEEcccccccccEEEEEEccccEEEEEEcccccccEEEcccccccEEEEcccccccccEEEEEEcccEEEEEEcccccccccccccccccccccEEccccEEEEEcccccccccccccEEEEEEEEEEcccccccccccEEEEEEEEEcccccccEEEEEEEEEccccEEEEEEcccccccEEEEEEEEEcccccEEEccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
MKSSTTSANCVLLICLLLFnsarggdnseqnkfrqreatddqlglpqidedalvntqcpknlelrwqtevsssiyatpliadinsdgkldivVPSFLHYLEVlegsdgdkmpgwpafhqssvhsspllydidkDGVREIALATYNGEVLFFRVSgymmtdkleiprrkvrkdwyvglhsdpvdrshpdvhddliVQESEAARMKSMLEtkkstpetnatvttstesnpapatvsnpdvkkVNESLvnvsnpseerkvneshtemniklptsvdnsstttvsggtnssengtntgrrllednnskgsqegndkedvpvataendqaldenadssfeLFRDTDEladeynydyddyvddamwgdeewtEEQHEKIEDYvnvdshilstpviadidndgvSEMIIAVSYffdheyydnpehlkelggidigkYVAGAIVVFNldtkqvkwttdldlstdnasfrayiyssptvvdldgdgnldilVGTSFGLFYVLdhhgkirekfPLEMAEIQGAVVAadinddgkieLVTTDTHGNVAAWTAEGKGIWEQHLKSLVtqgpsigdvdgdghsdVVVPTLSGNIyvlsgkdgskvrpypyrthgrvmNQVLLVDLTkrgekskgltIVTTSFDGYLylidgptscadvvdigETSYSMVladnvdggddLDLIVTTMngnvfcfstpaphhplkaWRSINQGRNNVAIRYnragiyvthpsrafrdeegrNFWVEIEIVdeyrfpsgsqapynvtttllvpgnyqgerriKQSQIFARRGkyriklptvgvrTTGTVLVEMVdknglyfsdefSLTFHMYYYKLLKWLLVLPMLGMFGVLVilrpqeamplpsfsrntdl
MKSSTTSANCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGymmtdkleiprrkvrkdWYVGLhsdpvdrshpdvhDDLIVQESEAARMKSMletkkstpetnatvttstesnpapatvsnpdvkkvneslvnvsnpseerkvneshtemniklptsvdnsstttvsggtnssengtntgrRLLEdnnskgsqegndkedvpVATAEndqaldenadssfelfRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVkwttdldlstdnaSFRAYIYSSptvvdldgdGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNiyvlsgkdgskvrpypyrthgrvmnQVLLVDltkrgekskgltivttSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSINQGRNNVAIRYNRAgiyvthpsrafrdeegrNFWVEIEIVDEyrfpsgsqapyNVTTTLlvpgnyqgerrikqsqifarrgkyriklptvgvrttgtVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLVILRpqeamplpsfsrntdl
MKSSTTSANCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLPtsvdnsstttvsggtnssengtntgRRLLEDNNSKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELAdeynydyddyvddAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIgdvdgdghsdvvvPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSINQGRNNVAIRYNRAGIYVTHPSRAFRDEEGRNFWVEIEIVDEYRFPSGSQAPYNVTTTLLVPGNYQGERRIKQSQIFARRGKYRIKLPtvgvrttgtvlvEMVDKNGLYFSDEFSLTFHmyyykllkwllvlpmlgmFGVLVILRPQEAMPLPSFSRNTDL
*******ANCVLLICLLLFNS*****************************DALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHS************************************************************************************************************************************************************LFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSINQGRNNVAIRYNRAGIYVTHPSRAFRDEEGRNFWVEIEIVDEYRFPSGSQAPYNVTTTLLVPGNYQGERRIKQSQIFARRGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLVILR****************
***STTSANCVLLICLLLFNS****************ATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLPTSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNNSKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSINQGRNNVAIRYNRAGIYVTHPSRAFRDEEGRNFWVEIEIVDEYRFPSGSQAPYNVTTTLLVPGNYQGERRIKQSQIFARRGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLVILRPQEAMPLPSFS*****
********NCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSM**************************VSNPDVKKVNESLVN**************TEMNIKLPTS*******************TNTGRRLLEDN***************VATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSINQGRNNVAIRYNRAGIYVTHPSRAFRDEEGRNFWVEIEIVDEYRFPSGSQAPYNVTTTLLVPGNYQGERRIKQSQIFARRGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLVILRPQEAMPLPSFSRNTDL
******SANCVLLICLLLFNSA*************REATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLE*********************************************************************************************************DVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSINQGRNNVAIRYNRAGIYVTHPSRAFRDEEGRNFWVEIEIVDEYRFPSGSQAPYNVTTTLLVPGNYQGERRIKQSQIFARRGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLVILRPQEAMPLPS*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSSTTSANCVLLICLLLFNSARGGDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLPTSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNNSKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSINQGRNNVAIRYNRAGIYVTHPSRAFRDEEGRNFWVEIEIVDEYRFPSGSQAPYNVTTTLLVPGNYQGERRIKQSQIFARRGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLVILRPQEAMPLPSFSRNTDL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query857 2.2.26 [Sep-21-2011]
Q0JRK4 942 Lambda-carrageenase OS=Ps N/A no 0.150 0.136 0.257 0.0006
>sp|Q0JRK4|CGLA_PSEVC Lambda-carrageenase OS=Pseudoalteromonas carrageenovora GN=cglA PE=1 SV=1 Back     alignment and function desciption
 Score = 47.0 bits (110), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)

Query: 523 GKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIY 582
           G   ++TT   G VAA+   G+ +WE  L   +     + D++GDG  ++      GN+Y
Sbjct: 49  GGSSIITTSYEGTVAAYKFNGEKLWENELSGFMNHDIWVQDINGDGLVEIFAANADGNVY 108

Query: 583 VLSGKDGSKVRPYPYRTHGRVMNQVLLV-DLTKRGEKSKGLTIVTTSFDGYLYLIDGPTS 641
            ++  DGS    + +  +   MN V ++ D  K+        +V   +D  LY I     
Sbjct: 109 CINS-DGS--LKWTFGLNEVPMNSVTVISDADKK-------YVVAGGYDKNLYYISTNGE 158

Query: 642 CADVVDIGETSYSMVLADNV 661
               ++ G  S   V  D V
Sbjct: 159 LLKTIESGTYSEEGVFGDGV 178
Hydrolyzes lambda-carrageenan with inversion of anomeric configuration. Does not hydrolyze iota- and kappa-carrageenans, agarose or porphyran.
Alteromonas carrageenovora (taxid: 227)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 6EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query857
255573883868 conserved hypothetical protein [Ricinus 0.947 0.935 0.787 0.0
297740250847 unnamed protein product [Vitis vinifera] 0.971 0.983 0.797 0.0
225440608857 PREDICTED: uncharacterized protein LOC10 0.974 0.974 0.790 0.0
356506784886 PREDICTED: uncharacterized protein LOC10 0.967 0.935 0.752 0.0
357468639890 Defective in exine formation [Medicago t 0.990 0.953 0.726 0.0
297833660897 hypothetical protein ARALYDRAFT_897057 [ 0.961 0.918 0.727 0.0
11138669896 defective in exine formation [Arabidopsi 0.962 0.920 0.737 0.0
18398367896 defective in exine formation protein (DE 0.962 0.920 0.737 0.0
28973744891 unknown protein [Arabidopsis thaliana] g 0.962 0.925 0.737 0.0
11138671896 defective in exine formation [Arabidopsi 0.962 0.920 0.736 0.0
>gi|255573883|ref|XP_002527860.1| conserved hypothetical protein [Ricinus communis] gi|223532711|gb|EEF34491.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1365 bits (3533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/866 (78%), Positives = 753/866 (86%), Gaps = 54/866 (6%)

Query: 25  GDNSEQNKFRQREATDDQLGLPQIDEDALVNTQCPKNLELRWQTEVSSSIYATPLIADIN 84
           G+ S +NKFR+REATDD LG P+IDE AL+NTQCP+NLELRWQTEVSSSIYA+PLIADIN
Sbjct: 24  GEESSKNKFREREATDDALGYPEIDETALLNTQCPRNLELRWQTEVSSSIYASPLIADIN 83

Query: 85  SDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALATY 144
           SDGKLDIVVPSF+HYLEVLEGSDGDKMPGWPAFHQS+VH+SPLLYDIDKDGVREIALATY
Sbjct: 84  SDGKLDIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATY 143

Query: 145 NGEVLFFRVSGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIV---QESEAA 201
           NGEVLFFRVSGYMMT+KL +PRR+VRKDW+VGL+ DPVDRS PDVHDD +V    E ++ 
Sbjct: 144 NGEVLFFRVSGYMMTEKLVVPRRRVRKDWHVGLNPDPVDRSQPDVHDDQLVFEAMEKKSE 203

Query: 202 RMKSMLE----------TKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNP 251
            + +++E          T  STPE N+ ++ STES   P +V+ P               
Sbjct: 204 SLDNIIEYCYSVETTGSTHGSTPEKNSAISASTEST-IPQSVTVP--------------- 247

Query: 252 SEERKVNESHTEMNIKLPTSVDNSSTTTVSGG--------------TNSSENGTNTGRRL 297
                VNE+ T+  IKLP ++DNSS  T+S G              TN++E GT TGRRL
Sbjct: 248 -----VNENQTDPIIKLPINMDNSSKDTMSAGLNNPENGNNTESVGTNTTEKGTKTGRRL 302

Query: 298 LEDNNSKGSQEG------NDKEDVPVATAENDQALDENADSSFELFRDTDELADEYNYDY 351
           LED+ +K SQEG      N+ E+V  AT END+ L+ +ADSSFELFRDTDELADEY+YDY
Sbjct: 303 LEDDKTKDSQEGSLESGENNSENVHEATVENDEGLEADADSSFELFRDTDELADEYSYDY 362

Query: 352 DDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHE 411
           DDYVDD MWGDEEWTEE+HEK+EDYVN+DSHIL TPVIADIDNDGVSE+I+AVSYFFDHE
Sbjct: 363 DDYVDDTMWGDEEWTEEKHEKLEDYVNIDSHILCTPVIADIDNDGVSEIIVAVSYFFDHE 422

Query: 412 YYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVV 471
           YYDNPEHLKELGGIDIGKYVAG+IVVFNLDTKQVKWT +LDLSTD ++FRAYIYSSPTVV
Sbjct: 423 YYDNPEHLKELGGIDIGKYVAGSIVVFNLDTKQVKWTKELDLSTDTSTFRAYIYSSPTVV 482

Query: 472 DLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTD 531
           DLDGDGNLDILVGTSFGLFYVLDHHG IREKFPLEMAEIQGAVVAADINDDGKIELVTTD
Sbjct: 483 DLDGDGNLDILVGTSFGLFYVLDHHGNIREKFPLEMAEIQGAVVAADINDDGKIELVTTD 542

Query: 532 THGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSK 591
           THGNVAAWT++GK IWE+HLKSLV+QGP++GDVDGDG +DVVVPT+SGNIYVLSGKDGS 
Sbjct: 543 THGNVAAWTSQGKEIWERHLKSLVSQGPTVGDVDGDGRTDVVVPTISGNIYVLSGKDGSI 602

Query: 592 VRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGET 651
           VRPYPYRTHGRVMNQVLLVDL+KRGEKSKGL++VTTSFDGYLYLIDGPTSCADVVDIGET
Sbjct: 603 VRPYPYRTHGRVMNQVLLVDLSKRGEKSKGLSLVTTSFDGYLYLIDGPTSCADVVDIGET 662

Query: 652 SYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSINQGRNNVAIRYNRAG 711
           SYS VLADNVDGGDDLDLIVTTMNGNVFCFSTP PHHPLKAWRS NQGRNNVA RYNR G
Sbjct: 663 SYSTVLADNVDGGDDLDLIVTTMNGNVFCFSTPVPHHPLKAWRSANQGRNNVANRYNREG 722

Query: 712 IYVTHPSRAFRDEEGRNFWVEIEIVDEYRFPSGSQAPYNVTTTLLVPGNYQGERRIKQSQ 771
           +Y+T  SRAFRDEEG+NFW+EIEIVD+YR+PSGSQAPY V+TTLLVPGNYQGERRIKQ++
Sbjct: 723 VYITPSSRAFRDEEGKNFWLEIEIVDKYRYPSGSQAPYKVSTTLLVPGNYQGERRIKQNE 782

Query: 772 IFARRGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPML 831
            F R GKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPML
Sbjct: 783 TFDRPGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPML 842

Query: 832 GMFGVLVILRPQEAMPLPSFSRNTDL 857
           GMFGVLVILRPQEAMPLPSFSRNTDL
Sbjct: 843 GMFGVLVILRPQEAMPLPSFSRNTDL 868

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297740250|emb|CBI30432.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440608|ref|XP_002273795.1| PREDICTED: uncharacterized protein LOC100251006 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356506784|ref|XP_003522156.1| PREDICTED: uncharacterized protein LOC100805038 [Glycine max] Back     alignment and taxonomy information
>gi|357468639|ref|XP_003604604.1| Defective in exine formation [Medicago truncatula] gi|355505659|gb|AES86801.1| Defective in exine formation [Medicago truncatula] Back     alignment and taxonomy information
>gi|297833660|ref|XP_002884712.1| hypothetical protein ARALYDRAFT_897057 [Arabidopsis lyrata subsp. lyrata] gi|297330552|gb|EFH60971.1| hypothetical protein ARALYDRAFT_897057 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|11138669|gb|AAG31444.1|AF257186_1 defective in exine formation [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18398367|ref|NP_566343.1| defective in exine formation protein (DEX1) [Arabidopsis thaliana] gi|332641198|gb|AEE74719.1| defective in exine formation protein (DEX1) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|28973744|gb|AAO64188.1| unknown protein [Arabidopsis thaliana] gi|110737094|dbj|BAF00499.1| defective in exine formation [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11138671|gb|AAG31445.1|AF257187_1 defective in exine formation [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query857
TAIR|locus:2095274896 DEX1 "DEFECTIVE IN EXINE FORMA 0.751 0.718 0.665 1.10000000001e-313
UNIPROTKB|Q9KQW0 691 VC1888 "Hemolysin-related prot 0.073 0.091 0.414 0.00013
TIGR_CMR|VC_1888 691 VC_1888 "hypothetical protein" 0.073 0.091 0.414 0.00013
TAIR|locus:2095274 DEX1 "DEFECTIVE IN EXINE FORMATION 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2187 (774.9 bits), Expect = 1.1e-313, Sum P(2) = 1.1e-313
 Identities = 435/654 (66%), Positives = 484/654 (74%)

Query:   211 KSTPET-NATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLP 269
             K TPE  N+++     +  A AT +    + +N ++   +N  ++ K++    E  IKL 
Sbjct:   246 KPTPELHNSSMDAGANNLAANATTAGSR-ENLNRNVT--TNEVDQSKISGDKNETVIKLN 302

Query:   270 XXXXXXXXXXXXXXXXXXXXXXXXX-RRLLEDNNSKGSQEGN-DKED----VPVATAEND 323
                                       RRLLE++ SK S + + D +D    V +AT END
Sbjct:   303 TSTGNSSETLGTSGNSSTAETVTKSGRRLLEEDGSKESVDSHSDSKDNSEGVRMATVEND 362

Query:   324 QALDENADSSFELFRDTDELAXXXXXXXXXXXXXAMWGDEEWTEEQHEKIEDYVNVDSHI 383
               L+ +ADSSFEL R+ DELA              MWGDEEW E QHE  EDYVN+D+HI
Sbjct:   363 GGLEADADSSFELLRENDELADEYSYDYDDYVDEKMWGDEEWVEGQHENSEDYVNIDAHI 422

Query:   384 LSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTK 443
             L TPVIADID DGV EMI+AVSYFFD EYYDNPEHLKELGGIDI  Y+A +IVVFNLDTK
Sbjct:   423 LCTPVIADIDKDGVQEMIVAVSYFFDPEYYDNPEHLKELGGIDIKNYIASSIVVFNLDTK 482

Query:   444 QVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKF 503
             QVKW  +LDLSTD A+FRAYIYSSPTVVDLDGDG LDILVGTSFGLFY +DH G IREKF
Sbjct:   483 QVKWIKELDLSTDKANFRAYIYSSPTVVDLDGDGYLDILVGTSFGLFYAMDHRGNIREKF 542

Query:   504 PLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIXX 563
             PLEMAEIQGAVVAADINDDGKIELVTTD+HGN+AAWT +G  IWE HLKSLV QGPSI  
Sbjct:   543 PLEMAEIQGAVVAADINDDGKIELVTTDSHGNIAAWTTQGVEIWEAHLKSLVPQGPSIGD 602

Query:   564 XXXXXXXXXXXPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLT 623
                        PT SGNIYVLSGKDGS VRPYPYRTHGRVMNQ+LLVDL KRGEK KGLT
Sbjct:   603 VDGDGHTEVVVPTSSGNIYVLSGKDGSIVRPYPYRTHGRVMNQLLLVDLNKRGEKKKGLT 662

Query:   624 IVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683
             IVTTSFDGYLYLIDGPTSC DVVDIGETSYSMVLADNVDGGDDLDLIV+TMNGNVFCFST
Sbjct:   663 IVTTSFDGYLYLIDGPTSCTDVVDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFST 722

Query:   684 PAPHHPLKAWRSINQGRNNVAIRYNRAGIYVTHPSRAFRDEEGRNFWVEIEIVDEYRFPS 743
             P+PHHPLKAWRS +QGRNN A RY+R G++VTH +R FRDEEG+NFW EIEIVD+YR+PS
Sbjct:   723 PSPHHPLKAWRSSDQGRNNKANRYDREGVFVTHSTRGFRDEEGKNFWAEIEIVDKYRYPS 782

Query:   744 GSQAPYNVTTTLLVPGNYQGERRIKQSQIFARRGKYRIKLPXXXXXXXXXXXXEMVDKNG 803
             GSQAPYNVTTTLLVPGNYQGERRI QSQI+ R GKYRIKLP            EM DKNG
Sbjct:   783 GSQAPYNVTTTLLVPGNYQGERRITQSQIYDRPGKYRIKLPTVGVRTTGTVMVEMADKNG 842

Query:   804 LYFSDEFSLTFHXXXXXXXXXXXXXXXXXXFGVLVILRPQEAMPLPSFSRNTDL 857
             L+FSDEFSLTFH                  FG+LVILRPQEA+PLPSFSRNTDL
Sbjct:   843 LHFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGLLVILRPQEAVPLPSFSRNTDL 896
GO:0005576 "extracellular region" evidence=ISM
GO:0005509 "calcium ion binding" evidence=ISS
GO:0010208 "pollen wall assembly" evidence=IMP
GO:0016020 "membrane" evidence=ISS
GO:0005783 "endoplasmic reticulum" evidence=IDA
UNIPROTKB|Q9KQW0 VC1888 "Hemolysin-related protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1888 VC_1888 "hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query857
pfam13360234 pfam13360, PQQ_2, PQQ-like domain 6e-05
pfam1351761 pfam13517, VCBS, Family description 9e-05
pfam1351761 pfam13517, VCBS, Family description 1e-04
pfam0183930 pfam01839, FG-GAP, FG-GAP repeat 4e-04
pfam0183930 pfam01839, FG-GAP, FG-GAP repeat 0.002
>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain Back     alignment and domain information 
 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 60/257 (23%), Positives = 90/257 (35%), Gaps = 42/257 (16%)

Query: 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYV 492
           G +   +  T +V W  DL   T      A             DG   + V T  G    
Sbjct: 3   GVVAALDAATGKVLWRVDLG-GTALGGGVAV------------DGGR-LYVATGKGELVA 48

Query: 493 LD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE-GKGIWEQ- 549
           LD   GK+  +  L      G ++ A     G + +VT D  G++ A  AE GK +W   
Sbjct: 49  LDAATGKLLWRKDLS-----GEILGAPTVAGGVVVVVTAD--GSLYALDAETGKLLWSYQ 101

Query: 550 -HLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVL 608
             L  L  +G S   + GD    V+V   SG +  L  K G  +   P            
Sbjct: 102 RSLPPLTLRGSSSPAIVGDT---VIVGFSSGKLVALDPKTGKVLWEAPVAAPRGGSEIER 158

Query: 609 LVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV---DIGETSYSMVLADNVDGGD 665
           LVD+T       G  +  +S+ G L  +D  T    V+   +I  +     +   +    
Sbjct: 159 LVDITGT-PVVDGGRVYASSYQGRLVALDLAT--GKVLWSREIS-SINGPAVDGGL---- 210

Query: 666 DLDLIVTTMNGNVFCFS 682
              L V   +G +    
Sbjct: 211 ---LFVVDDDGELVALD 224

This domain contains several repeats of the PQQ repeat. Length = 234
>gnl|CDD|222190 pfam13517, VCBS, Family description Back     alignment and domain information
>gnl|CDD|222190 pfam13517, VCBS, Family description Back     alignment and domain information
>gnl|CDD|216733 pfam01839, FG-GAP, FG-GAP repeat Back     alignment and domain information
>gnl|CDD|216733 pfam01839, FG-GAP, FG-GAP repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 857
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 99.69
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 99.67
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 99.59
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 99.47
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 99.21
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 99.18
KOG3637 1030 consensus Vitronectin receptor, alpha subunit [Ext 98.99
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 98.91
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 98.9
KOG3637 1030 consensus Vitronectin receptor, alpha subunit [Ext 98.86
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 98.71
TIGR03075527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 98.41
TIGR03074764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 98.35
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 98.32
COG1520370 FOG: WD40-like repeat [Function unknown] 98.26
KOG4550606 consensus Predicted membrane protein [Function unk 98.24
TIGR03074764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 98.11
PF1351761 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhi 98.1
PF1351761 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhi 98.03
COG1520370 FOG: WD40-like repeat [Function unknown] 97.99
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 97.9
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 97.83
KOG4550 606 consensus Predicted membrane protein [Function unk 97.74
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 97.57
PF0183934 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This re 95.94
PF0183934 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This re 95.61
KOG0296399 consensus Angio-associated migratory cell protein 94.98
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 94.83
KOG0316307 consensus Conserved WD40 repeat-containing protein 94.68
KOG2106626 consensus Uncharacterized conserved protein, conta 93.9
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 93.58
COG4993773 Gcd Glucose dehydrogenase [Carbohydrate transport 93.32
PTZ00420 568 coronin; Provisional 92.47
KOG0266456 consensus WD40 repeat-containing protein [General 92.43
KOG0266456 consensus WD40 repeat-containing protein [General 91.41
PLN00181793 protein SPA1-RELATED; Provisional 90.7
PTZ00421493 coronin; Provisional 90.64
KOG0296399 consensus Angio-associated migratory cell protein 90.34
PF05567335 Neisseria_PilC: Neisseria PilC beta-propeller doma 89.87
KOG0316307 consensus Conserved WD40 repeat-containing protein 89.74
PF14779257 BBS1: Ciliary BBSome complex subunit 1 89.53
PLN00181793 protein SPA1-RELATED; Provisional 89.35
KOG0646476 consensus WD40 repeat protein [General function pr 89.29
KOG2055514 consensus WD40 repeat protein [General function pr 89.22
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 89.21
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 88.45
KOG0282503 consensus mRNA splicing factor [Function unknown] 88.27
KOG2048 691 consensus WD40 repeat protein [General function pr 87.75
KOG1539 910 consensus WD repeat protein [General function pred 87.65
KOG0318603 consensus WD40 repeat stress protein/actin interac 85.73
KOG2106626 consensus Uncharacterized conserved protein, conta 85.51
PF1357040 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. 84.45
KOG2048 691 consensus WD40 repeat protein [General function pr 84.41
KOG0282503 consensus mRNA splicing factor [Function unknown] 84.19
COG4993 773 Gcd Glucose dehydrogenase [Carbohydrate transport 83.98
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 83.01
KOG2055514 consensus WD40 repeat protein [General function pr 82.59
PF1357040 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. 82.55
PF05567335 Neisseria_PilC: Neisseria PilC beta-propeller doma 82.41
KOG0275508 consensus Conserved WD40 repeat-containing protein 82.09
KOG2321 703 consensus WD40 repeat protein [General function pr 81.54
KOG2321 703 consensus WD40 repeat protein [General function pr 80.77
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 80.65
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information 
Probab=99.69  E-value=2.9e-15  Score=155.04  Aligned_cols=332  Identities=18%  Similarity=0.292  Sum_probs=222.5

Q ss_pred             eeEEeecCceeecCceEEecCCCCceeEEEcCcceEEEEEECCCCCCCCCCccccCCceeecceeeeeCCCCceEEEEEe
Q 003012           64 LRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALAT  143 (857)
Q Consensus        64 l~w~~~~~ssv~atp~i~d~~~dg~~~i~v~s~~~~~~~l~g~~g~~~~~wp~~~~~~~~~sp~~~d~~~dg~~~~~~~~  143 (857)
                      +||..++++||.|+||++=  .|-|..+++.||+|-+.+++-.+|...  |.++.+.++++||++.   +|   .|+|+|
T Consensus         1 ~rW~vd~~kCVDaspLVV~--~dskT~v~igSHs~~~~avd~~sG~~~--We~ilg~RiE~sa~vv---gd---fVV~GC   70 (354)
T KOG4649|consen    1 MRWAVDLRKCVDASPLVVC--NDSKTLVVIGSHSGIVIAVDPQSGNLI--WEAILGVRIECSAIVV---GD---FVVLGC   70 (354)
T ss_pred             CceeccchhhccCCcEEEe--cCCceEEEEecCCceEEEecCCCCcEE--eehhhCceeeeeeEEE---CC---EEEEEE
Confidence            5899999999999999982  245999999999999999999999999  9999999999999996   43   489999


Q ss_pred             eceeEEEEee-cCccccceeeecceeeeccccccCCCCCCCCCCCCCCcchhhhhhhhhhhcccccccCCCCcccccccc
Q 003012          144 YNGEVLFFRV-SGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTT  222 (857)
Q Consensus       144 ~~g~~~~~~~-~g~~~~~~~~vp~~~v~k~w~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (857)
                      |+|.+||++. +|+              +-|..              ...+.+|....+.+                   
T Consensus        71 y~g~lYfl~~~tGs--------------~~w~f--------------~~~~~vk~~a~~d~-------------------  103 (354)
T KOG4649|consen   71 YSGGLYFLCVKTGS--------------QIWNF--------------VILETVKVRAQCDF-------------------  103 (354)
T ss_pred             ccCcEEEEEecchh--------------heeee--------------eehhhhccceEEcC-------------------
Confidence            9999999998 788              78886              33344444311111                   


Q ss_pred             ccCCCCCCCccCCCcccccccccccCCCCcccccccccccccccccCCccCCCCcccccCCCCCCCCCCcccccccccCC
Q 003012          223 STESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLPTSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNN  302 (857)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (857)
                                                                                                      
T Consensus       104 --------------------------------------------------------------------------------  103 (354)
T KOG4649|consen  104 --------------------------------------------------------------------------------  103 (354)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCccccccCcccccccccCccccccCccccccccccccccccCCCCCCcccccccccccccceeecccc
Q 003012          303 SKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSH  382 (857)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~wg~~~W~~~~~~~~~~~i~vd~~  382 (857)
                      +.++.|-|+|                                +...|++|.+...+.|..               .+...
T Consensus       104 ~~glIycgsh--------------------------------d~~~yalD~~~~~cVyks---------------kcgG~  136 (354)
T KOG4649|consen  104 DGGLIYCGSH--------------------------------DGNFYALDPKTYGCVYKS---------------KCGGG  136 (354)
T ss_pred             CCceEEEecC--------------------------------CCcEEEecccccceEEec---------------ccCCc
Confidence            1256676676                                456789999998999876               78888


Q ss_pred             cccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCC--ceEEEEeccCCCCcccc
Q 003012          383 ILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTK--QVKWTTDLDLSTDNASF  460 (857)
Q Consensus       383 i~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG--~i~W~~~l~ls~~~~~~  460 (857)
                      ++++|+++-  |||  -|.++.                          .+|.+.+.+.+++  ...|.....        
T Consensus       137 ~f~sP~i~~--g~~--sly~a~--------------------------t~G~vlavt~~~~~~~~~w~~~~~--------  178 (354)
T KOG4649|consen  137 TFVSPVIAP--GDG--SLYAAI--------------------------TAGAVLAVTKNPYSSTEFWAATRF--------  178 (354)
T ss_pred             eeccceecC--CCc--eEEEEe--------------------------ccceEEEEccCCCCcceehhhhcC--------
Confidence            999999983  233  344432                          2377888888877  677876553        


Q ss_pred             ccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEe
Q 003012          461 RAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWT  540 (857)
Q Consensus       461 ~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~  540 (857)
                       ++++++|...-      .-+.+++.+|.+..++..|+.+|++... |.++..|..--    ..-+.++...++-+++..
T Consensus       179 -~PiF~splcv~------~sv~i~~VdG~l~~f~~sG~qvwr~~t~-GpIf~~Pc~s~----Ps~q~i~~~~~~Cf~~~~  246 (354)
T KOG4649|consen  179 -GPIFASPLCVG------SSVIITTVDGVLTSFDESGRQVWRPATK-GPIFMEPCESR----PSCQQISLENENCFCAPL  246 (354)
T ss_pred             -CccccCceecc------ceEEEEEeccEEEEEcCCCcEEEeecCC-CceecccccCC----CcceEEEEecCCeEEEec
Confidence             56778877664      6788888999999999999999965444 55554433210    111333333344444433


Q ss_pred             c-CCCeeEEEccccc--cc--cCCEEEecCCC-Cccc--EEEEecCCcEEEE---------ECCCCCeecccccccCCcc
Q 003012          541 A-EGKGIWEQHLKSL--VT--QGPSIGDVDGD-GHSD--VVVPTLSGNIYVL---------SGKDGSKVRPYPYRTHGRV  603 (857)
Q Consensus       541 ~-~G~~~W~~~~~~~--~~--~~vavgDlDGD-G~~D--Lvv~t~~G~I~~l---------~~~~G~~~~~~~~~~~g~~  603 (857)
                      + .|..+|..+.+..  ..  ..+.+ |+-.= +..+  +-..+.+|+++.+         ...+|+...-......+.+
T Consensus       247 p~~ghL~w~~~~g~t~~vy~~p~l~F-~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eI  325 (354)
T KOG4649|consen  247 PIAGHLLWATQSGTTLHVYLSPKLRF-DLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEI  325 (354)
T ss_pred             cccceEEEEecCCcEEEEEeCcccce-eccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCccc
Confidence            3 7888898765421  11  11111 11111 1112  2223345666666         3334544333334445566


Q ss_pred             ccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCC
Q 003012          604 MNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPT  640 (857)
Q Consensus       604 ~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~  640 (857)
                      .+++.+.|        |  .|+++..|.++++++-.+
T Consensus       326 FsSPvii~--------g--rl~igcRDdYv~cldl~~  352 (354)
T KOG4649|consen  326 FSSPVIID--------G--RLLIGCRDDYVRCLDLDT  352 (354)
T ss_pred             ccCCeEEc--------c--EEEEEEccCeEEEEeccc
Confidence            56655553        1  389999999999988543

>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures] Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>KOG4550 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A Back     alignment and domain information
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG4550 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins Back     alignment and domain information
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF14779 BBS1: Ciliary BBSome complex subunit 1 Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A Back     alignment and domain information
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query857
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 3e-13
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 2e-11
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 2e-09
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 3e-10
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 2e-09
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 4e-04
3v4v_A597 Integrin alpha-4; cell adhesion, madcam-1, membran 9e-10
3v4v_A597 Integrin alpha-4; cell adhesion, madcam-1, membran 1e-05
2bwr_A401 Psathyrella velutina lectin; N-acetyl-glucosamine; 7e-08
2bwr_A401 Psathyrella velutina lectin; N-acetyl-glucosamine; 7e-08
2bwr_A401 Psathyrella velutina lectin; N-acetyl-glucosamine; 8e-08
4a7k_A 900 Aldos-2-ulose dehydratase; lyase, dehydratase/isom 1e-07
4a7k_A 900 Aldos-2-ulose dehydratase; lyase, dehydratase/isom 6e-06
4a7k_A 900 Aldos-2-ulose dehydratase; lyase, dehydratase/isom 2e-04
3ije_A 967 Integrin alpha-V; integrin structure, activation, 2e-06
3vi3_A632 Integrin alpha-5; beta propeller fold, rossman fol 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2zux_A591 YESW protein; beta-propeller, lyase, rhamnose comp 1e-05
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 4e-05
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 6e-05
3t3p_A457 Integrin alpha-IIB; integrin, cell adhesion, blood 7e-05
3fcs_A 959 Integrin, alpha 2B; beta propeller, rossmann fold, 2e-04
2zuy_A620 YESX protein; beta-propeller, lyase; 1.65A {Bacill 8e-04
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 Back     alignment and structure
 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 55/325 (16%), Positives = 105/325 (32%), Gaps = 91/325 (28%)

Query: 361 GDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLK 420
           G E+W            +    I+S   I +       +++   S   D   Y       
Sbjct: 87  GTEKWR----------FDTKKAIVSDFTIFE-------DILYVTSM--DGHLY------- 120

Query: 421 ELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLD 480
               I+                   KW                IY++P V +   DG   
Sbjct: 121 ---AINT--------------DGTEKWRFKTK---------KAIYATPIVSE---DGT-- 149

Query: 481 ILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWT 540
           I VG++    Y ++  G  + +F    A    A +  D        +        V A  
Sbjct: 150 IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGT------IYFGS--DKVYAIN 201

Query: 541 AEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTH 600
            +G   W  +        P+I +   DG   + V +L G++Y ++  DG++   + ++T 
Sbjct: 202 PDGTEKWNFYAGYWTVTRPAISE---DGT--IYVTSLDGHLYAIN-PDGTEK--WRFKTG 253

Query: 601 GRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYS--MVLA 658
            R+ +  ++ +           TI   S+DG+LY I+   +     + G    +  ++  
Sbjct: 254 KRIESSPVIGN---------TDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDE 304

Query: 659 DNVDGGDDLDLIVTTMNGNVFCFST 683
           +         +   T NG  +    
Sbjct: 305 NGT-------IYFGTRNGKFYALFN 322
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A* Length = 597 Back     alignment and structure
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A* Length = 597 Back     alignment and structure
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Length = 401 Back     alignment and structure
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Length = 401 Back     alignment and structure
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Length = 401 Back     alignment and structure
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A* Length = 900 Back     alignment and structure
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A* Length = 900 Back     alignment and structure
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A* Length = 900 Back     alignment and structure
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A* Length = 967 Back     alignment and structure
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A* Length = 632 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* Length = 591 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 Back     alignment and structure
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A* Length = 457 Back     alignment and structure
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} Length = 959 Back     alignment and structure
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} Length = 620 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query857
2bwr_A401 Psathyrella velutina lectin; N-acetyl-glucosamine; 99.82
4a7k_A 900 Aldos-2-ulose dehydratase; lyase, dehydratase/isom 99.8
2bwr_A401 Psathyrella velutina lectin; N-acetyl-glucosamine; 99.78
2zux_A591 YESW protein; beta-propeller, lyase, rhamnose comp 99.7
2zux_A591 YESW protein; beta-propeller, lyase, rhamnose comp 99.7
4a7k_A 900 Aldos-2-ulose dehydratase; lyase, dehydratase/isom 99.7
2zuy_A620 YESX protein; beta-propeller, lyase; 1.65A {Bacill 99.65
2zuy_A620 YESX protein; beta-propeller, lyase; 1.65A {Bacill 99.64
3ije_A 967 Integrin alpha-V; integrin structure, activation, 99.51
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 99.51
3v4v_A597 Integrin alpha-4; cell adhesion, madcam-1, membran 99.47
3ije_A 967 Integrin alpha-V; integrin structure, activation, 99.38
3v4v_A597 Integrin alpha-4; cell adhesion, madcam-1, membran 99.34
3vi3_A632 Integrin alpha-5; beta propeller fold, rossman fol 99.31
3vi3_A632 Integrin alpha-5; beta propeller fold, rossman fol 99.28
3fcs_A 959 Integrin, alpha 2B; beta propeller, rossmann fold, 99.22
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 99.2
3t3p_A457 Integrin alpha-IIB; integrin, cell adhesion, blood 99.14
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 99.13
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 99.09
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 99.08
3fcs_A 959 Integrin, alpha 2B; beta propeller, rossmann fold, 99.08
1kb0_A677 Quinohemoprotein alcohol dehydrogenase; beta-prope 99.04
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 99.02
3t3p_A457 Integrin alpha-IIB; integrin, cell adhesion, blood 99.01
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 98.97
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 98.91
1yiq_A689 Quinohemoprotein alcohol dehydrogenase; electron t 98.86
1kv9_A668 Type II quinohemoprotein alcohol dehydrogenase; el 98.8
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 98.65
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 98.61
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 98.51
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 98.37
1yiq_A 689 Quinohemoprotein alcohol dehydrogenase; electron t 98.35
1kv9_A 668 Type II quinohemoprotein alcohol dehydrogenase; el 98.34
1kb0_A 677 Quinohemoprotein alcohol dehydrogenase; beta-prope 98.29
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 98.24
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 98.2
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 97.98
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 97.8
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 97.77
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 97.71
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 97.67
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.46
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 97.35
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.34
4g56_B357 MGC81050 protein; protein arginine methyltransfera 97.32
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 97.31
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 97.23
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 97.22
4g56_B357 MGC81050 protein; protein arginine methyltransfera 97.22
3ow8_A321 WD repeat-containing protein 61; structural genomi 97.2
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 97.19
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 97.15
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 97.01
3ow8_A321 WD repeat-containing protein 61; structural genomi 97.01
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.01
2ymu_A577 WD-40 repeat protein; unknown function, two domain 96.98
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 96.98
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 96.96
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 96.95
3jrp_A379 Fusion protein of protein transport protein SEC13 96.93
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 96.92
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 96.87
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.86
4e54_B435 DNA damage-binding protein 2; beta barrel, double 96.83
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 96.83
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 96.82
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.79
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 96.79
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 96.72
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 96.71
2ymu_A577 WD-40 repeat protein; unknown function, two domain 96.65
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 96.64
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 96.61
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.6
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 96.6
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 96.56
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 96.54
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.54
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.5
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 96.48
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.43
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 96.43
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 96.42
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 96.4
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 96.37
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 96.36
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 96.34
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 96.33
4e54_B435 DNA damage-binding protein 2; beta barrel, double 96.32
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 96.31
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 96.26
3hx6_A 570 Type 4 fimbrial biogenesis protein PILY1; beta pro 96.21
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.14
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 96.14
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 96.12
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 96.12
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 96.09
3jrp_A379 Fusion protein of protein transport protein SEC13 96.04
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 96.03
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 96.02
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 96.02
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 95.96
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 95.94
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.89
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 95.87
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 95.79
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 95.74
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 95.65
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 95.62
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 95.6
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.57
1nr0_A 611 Actin interacting protein 1; beta propeller, WD40 95.55
2xyi_A430 Probable histone-binding protein CAF1; transcripti 95.46
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 95.43
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 95.41
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 95.4
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 95.33
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 95.31
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 95.27
3jro_A 753 Fusion protein of protein transport protein SEC13 95.24
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 95.22
3hx6_A570 Type 4 fimbrial biogenesis protein PILY1; beta pro 95.22
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 95.16
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 95.13
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 95.06
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 94.97
3jro_A 753 Fusion protein of protein transport protein SEC13 94.93
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 94.73
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 94.66
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 94.65
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 94.64
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 94.6
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 94.59
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 94.58
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 94.56
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 94.5
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 94.34
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 94.29
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 94.24
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 94.21
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 94.18
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 94.08
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 93.93
2xyi_A430 Probable histone-binding protein CAF1; transcripti 93.86
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 93.81
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 93.74
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 93.53
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 93.42
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 93.39
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 93.24
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 93.07
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 92.97
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 92.93
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 92.61
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 92.41
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 92.38
2pm7_B297 Protein transport protein SEC13, protein transport 92.31
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 92.3
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 92.22
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 91.92
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 91.76
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 91.46
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 91.41
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 91.38
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 91.27
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 91.23
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 91.2
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 91.18
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 90.8
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 90.49
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 90.38
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 90.14
2oaj_A 902 Protein SNI1; WD40 repeat, beta propeller, endocyt 90.14
2pm7_B297 Protein transport protein SEC13, protein transport 89.84
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 88.63
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 87.91
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 86.79
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 85.7
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 85.53
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 85.49
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 85.15
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 85.09
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 85.07
3v9f_A781 Two-component system sensor histidine kinase/RESP 84.91
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 84.53
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 83.81
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 82.66
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 80.66
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 80.43
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Back     alignment and structure
Probab=99.82  E-value=1.8e-19  Score=202.98  Aligned_cols=262  Identities=15%  Similarity=0.129  Sum_probs=158.7

Q ss_pred             ceEEEeecCCCCccEEEEeeccCCcccccCCcccccc-ccccccccccceEEEEECCCCceEEEEeccCCCCccccccc-
Q 003012          386 TPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKEL-GGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAY-  463 (857)
Q Consensus       386 spavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~-~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~-  463 (857)
                      +++++||||||++||+++..  ....||.|. +.+.| ...                   ..|.......     ...+ 
T Consensus        60 ~~~~~D~dgDG~~Dl~~~~~--~~~~~~~n~-g~g~f~~~~-------------------~~~~~~~~~~-----~~~~~  112 (401)
T 2bwr_A           60 VRLLADTTGDNQSDVVGFGE--NGVWISTNN-GNNTFVDPP-------------------KMVLANFAYA-----AGGWR  112 (401)
T ss_dssp             EEEEECSSSSSCCEEEEECS--SSEEEECBC-SSSCBCSSC-------------------EEEESCSBTT-----BSCCC
T ss_pred             eeeeeccCCCCchhEEEeCC--CcEEEEEeC-CCccccCCc-------------------eeeecccccc-----CCCcc
Confidence            46899999999999998743  233556554 22222 110                   0011111000     0010 


Q ss_pred             -cccccEEEecCCCCCccEEEEeeCCeEEEEeCCCc--eeeeeeeecc--------ceeceeEEEeecCCCCeEEEEEeC
Q 003012          464 -IYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGK--IREKFPLEMA--------EIQGAVVAADINDDGKIELVTTDT  532 (857)
Q Consensus       464 -~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~--~~~~~~~~~g--------~i~ss~~vaD~DGDG~~DLvv~~~  532 (857)
                       ...+++++|+|+||++||+.. ..+.++++.++|.  +.........        .....+.++|+|+||++||++.+ 
T Consensus       113 ~~~~~~~~~D~dgDG~~Dl~~~-~~~~~~~~~n~g~g~f~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dl~~~~-  190 (401)
T 2bwr_A          113 VEKHIRFMADLRKTGRADIVGF-GDGGIYISRNNGGGQFAPAQLALNNFGYAQGWRLDRHLRFLADVTGDGLLDVVGFG-  190 (401)
T ss_dssp             TTTCEEEEECCSSSSSCEEEEE-CSSSEEEECBCSTTCBCCCEEEESCSSGGGTCCTTTCEEEEECSSSSSCCEEEEEC-
T ss_pred             cCCceeEeecCCCCCCcCEEEE-CCCCEEEEEeCCCCccccccccccCccccCccccCCcceEEEEcCCCCCccEEEEC-
Confidence             013568999999999999964 3556788876554  3222111110        11245789999999999999875 


Q ss_pred             CCcEEEEecCCCeeEEEcccc---c---------cccCCEEEecCCCCcccEEEEecCCcEEEEECC-CCCeeccccccc
Q 003012          533 HGNVAAWTAEGKGIWEQHLKS---L---------VTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK-DGSKVRPYPYRT  599 (857)
Q Consensus       533 ~G~l~~~~~~G~~~W~~~~~~---~---------~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~-~G~~~~~~~~~~  599 (857)
                      .+.+++|.++|.+.|......   .         ....+.++|+||||++||++... +.+++|.+. +|.+........
T Consensus       191 ~~~~~~~~n~g~g~f~~~~~~~~~~~~~~~g~~~~~~~~~~~D~dgDG~~Dlv~~~~-~~~~~~~n~g~g~f~~~~~~~~  269 (401)
T 2bwr_A          191 ENQVYIARNSGNGTFQPAQAVVNNFCIGAGGWTISAHPRVVADLTGDRKADILGFGV-AGVYTSLNNGNGTFGAVNLVLK  269 (401)
T ss_dssp             SSCEEEECBCSSSCBCCCEEEESCSBTTBSCCCTTTCCEEEECSSSSSCCEEEEECS-SSEEEECBCSSSCBCCCEEEES
T ss_pred             CCcEEEEEeCCCCceecceeeccccccCcCCcccCCcceeeeEcCCCCCccEEEECC-CcEEEEEeCCCccccCceeccc
Confidence            477889988887766533110   0         13456899999999999998654 567777653 333322211111


Q ss_pred             C-----C--ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEE--cCCCCceEEEEe------CCc---ceeeEEEEee
Q 003012          600 H-----G--RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLI--DGPTSCADVVDI------GET---SYSMVLADNV  661 (857)
Q Consensus       600 ~-----g--~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~--dg~~g~~~~i~~------g~~---~~s~~~a~Dl  661 (857)
                      .     +  ....++.++|+|    +||.+||++... +.++++  ++.+.+.....+      +..   ....+.++||
T Consensus       270 ~~~~~~gw~~~~~~~~~~D~d----gDG~~Dlv~~~~-~~~~~~~n~g~g~f~~~~~~~~~~~~~~g~~~~~~~~~~~D~  344 (401)
T 2bwr_A          270 DFGVNSGWRVEKHVRCVSSLT----NKKVGDIIGFGD-AGVYVALNNGNGTFGPVKRVIDNFGYNQGWRVDKHPRFVVDL  344 (401)
T ss_dssp             CSSGGGTCCTTTCEEEEECCS----TTCSCEEEEECS-SSEEEECBCSSSCBCCCEEEESCSSGGGTCCTTTCCEEEECS
T ss_pred             CcccCCcccccCccceeEeCC----CCCCccEEEEcC-CeEEEEecCCCccccCcceeccccccCCCcccccceeeeEcc
Confidence            0     0  023457899999    579999999754 444444  344444443221      110   1234788999


Q ss_pred             cCCCCccEEEEecCCcEEEEeC
Q 003012          662 DGGDDLDLIVTTMNGNVFCFST  683 (857)
Q Consensus       662 DGDG~~DLvv~t~~G~V~~~~~  683 (857)
                      |+||++||++.+ .+.+++|.+
T Consensus       345 dgDG~~Dlv~~~-~~~~~~~~n  365 (401)
T 2bwr_A          345 TGDGCADIVGFG-ENSVWACMN  365 (401)
T ss_dssp             SSSSSCEEEEEC-SSCEEEEEE
T ss_pred             CCCCCccEEEEC-CCcEEEEEe
Confidence            999999999865 677777765
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A* Back     alignment and structure
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A* Back     alignment and structure
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* Back     alignment and structure
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* Back     alignment and structure
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A* Back     alignment and structure
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} Back     alignment and structure
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} Back     alignment and structure
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A* Back     alignment and structure
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A* Back     alignment and structure
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A* Back     alignment and structure
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A* Back     alignment and structure
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A* Back     alignment and structure
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A* Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A* Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 857
d1tyea_452 b.69.8.1 (A:) Integrin alpha N-terminal domain {Hu 5e-08
d1jv2a4438 b.69.8.1 (A:1-438) Integrin alpha N-terminal domai 0.001
>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} Length = 452 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform IIb [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 5e-08
 Identities = 40/327 (12%), Positives = 89/327 (27%), Gaps = 55/327 (16%)

Query: 270 TSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNNSKGSQEGNDKEDVPVATAENDQALDEN 329
            S   +    +  G            +    +     + G     V   +   D +  E 
Sbjct: 171 FSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEY 230

Query: 330 ADSSFELFRDTDELADEYNYDYDDYVDDAMWGDE--------EWTEEQHEKIEDYVNVDS 381
            D  +       E   + + +  +YV  A             +   ++  ++     + S
Sbjct: 231 FDGYWGYSVAVGE--FDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRL-RAEQMAS 287

Query: 382 HILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLD 441
           +   +  + D++ DG  ++++    + +                D      G + +F   
Sbjct: 288 YFGHSVAVTDVNGDGRHDLLVGAPLYME-------------SRADRKLAEVGRVYLFLQP 334

Query: 442 TKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIRE 501
                      L T    +  +  +   + DLD DG  DI V                  
Sbjct: 335 RGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAA---------------- 378

Query: 502 KFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSI 561
             P      +G V+      +G     +          +A G  +               
Sbjct: 379 --PYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSL------------RGA 424

Query: 562 GDVDGDGHSDVVVPTL-SGNIYVLSGK 587
            D+D +G+ D++V    +  + V   +
Sbjct: 425 VDIDDNGYPDLIVGAYGANQVAVYRAQ 451
>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]} Length = 438 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query857
d1jv2a4438 Integrin alpha N-terminal domain {Human (Homo sapi 98.96
d1jv2a4438 Integrin alpha N-terminal domain {Human (Homo sapi 98.95
d1tyea_452 Integrin alpha N-terminal domain {Human (Homo sapi 98.92
d1tyea_452 Integrin alpha N-terminal domain {Human (Homo sapi 98.85
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 98.85
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 98.74
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 98.65
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 98.52
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 98.1
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 97.94
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 97.93
d1w6sa_596 Methanol dehydrogenase, heavy chain {Methylobacter 97.8
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 97.78
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 97.67
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 97.48
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 97.32
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 96.72
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 96.72
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 96.4
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 96.38
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 96.03
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 95.87
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 95.41
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 95.39
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 95.1
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 94.88
d1tbga_340 beta1-subunit of the signal-transducing G protein 94.43
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 94.19
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 93.13
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 92.69
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 92.51
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 92.11
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 92.1
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 91.81
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 89.54
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 89.17
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 88.81
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 88.74
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 88.1
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 87.71
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 86.78
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 85.89
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 85.55
d1tbga_340 beta1-subunit of the signal-transducing G protein 84.74
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 83.71
>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Integrin alpha N-terminal domain
family: Integrin alpha N-terminal domain
domain: Integrin alpha N-terminal domain
species: Human (Homo sapiens), isoform V [TaxId: 9606]

Probab=98.96  E-value=1e-09  Score=121.77  Aligned_cols=123  Identities=26%  Similarity=0.403  Sum_probs=79.5

Q ss_pred             ccccccEEEecCCCCCccEEEEee-----CCeEEEEeCCCc-eeeeeeeec--cceeceeEEEeecCCCCeEEEEEeCC-
Q 003012          463 YIYSSPTVVDLDGDGNLDILVGTS-----FGLFYVLDHHGK-IREKFPLEM--AEIQGAVVAADINDDGKIELVTTDTH-  533 (857)
Q Consensus       463 ~~~sspavaDlDGDG~~DIvVg~~-----~G~Lyv~~~dG~-~~~~~~~~~--g~i~ss~~vaD~DGDG~~DLvv~~~~-  533 (857)
                      +...+++++|+|+||+.||+++..     .+.+|+++.++. ..+......  ......++++|+|+||..||+++... 
T Consensus       221 ~~G~sva~gd~~~DG~~dvvvGap~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~D~ngDg~~Dl~vg~~~~  300 (438)
T d1jv2a4         221 YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLF  300 (438)
T ss_dssp             CBTSEEEEECCSSSSSCEEEEEETTHHHHTCEEEEEETTTCCEEEEEECSSTTSCTTSEEEEECTTSSSCCEEEEEETTC
T ss_pred             cccceEEEeeECCCCcceEEEEeeccCCCceEEEEecCCCCcceeeeecccCCCccceeEEEEEecCCccccEEEecccc
Confidence            344578999999999999999854     357899886443 222222111  12334688999999999999998642 


Q ss_pred             ------------CcEEEEecCCCeeEEEccc-c-----ccc-cCCEEEecCCCCcccEEEEec------CCcEEEEE
Q 003012          534 ------------GNVAAWTAEGKGIWEQHLK-S-----LVT-QGPSIGDVDGDGHSDVVVPTL------SGNIYVLS  585 (857)
Q Consensus       534 ------------G~l~~~~~~G~~~W~~~~~-~-----~~~-~~vavgDlDGDG~~DLvv~t~------~G~I~~l~  585 (857)
                                  +.++.+...+...+..... .     ... ....++|+|+||..||+++..      .|.+|+|.
T Consensus       301 ~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~fG~sv~~~gD~ngDG~~Di~Vgap~~~~~~~G~vyi~~  377 (438)
T d1jv2a4         301 MDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFN  377 (438)
T ss_dssp             EEECTTSCEEECCEEEEEEECTTSCEEEECCBCSSSSSCSBTCCBCCSCSSCSSSCCCBEEETTCSGGGCCEEECCC
T ss_pred             ccccccccccccceeeeecccccccccceeccCcccccccCceeEeeeeecCCCCcCEEEeCCCCCCCCCceEEEEe
Confidence                        3455555555444443211 1     112 233578999999999999854      34455554
>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]} Back     information, alignment and structure
>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} Back     information, alignment and structure
>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure