Citrus Sinensis ID: 003013

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------
MLEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLLQEPAAADQPSSSANTSKFRKLIPTCCTNFSPRSIQFESKMVSKIKGITDRLQDIITTQKGLLDSQIVISVGKSRDVGQRLPTPSLVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSNNDDDLNSLQVKLKERLEWEEWIPCGAGQEVDEVFPKLRRLSLHRCDKLQGTLPKRLLLLDTLYITSCDQLLMTIQCLPALSKLLIHGCKRVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEINDRWLFDKIDF
cHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccEEEccHHHHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHcccccEEcccccccEEccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEcccccEEEEccccccccccccEEccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHcccccccEEEEEccccccccccccccccccEEEcccccccccccHHHHccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEccccccccccccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEccccccccccccccccccEEEEEccccccccccccccccccEEEccccccccccccccccccccccEEEEEcccccccccccccccccEEEcccccccccccccccccccccEEcccccccccccccccccccccEEEcccccHHHHHHcccccccccccccccEEEEccEEEEEEccc
cHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccccccccccccccccccEccccHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHHccHHHHHHcccEEEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHccccccEEEEEcccHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccHccccccHHcccccccccccHHccHHHHccccccccccccEEEEEEcccccccccccccccHHHEEEEcccccHHcccccccccccccccEEEEcccccHcccccccccccccEEEEccccccccccHHHccccccccEEEEEcccccccccccccccccccEEEccccccHHcccHHHHHHHcccccccHccccccccccccccEEEEcccccccccccccccccccEEEEcccccHcccccccccccccEEEEcccccHHcccHHccccccccEEEEccccccccccHHccccccccEEEEcccccHHcccHHccccccccEEEEcccccccccccccccccccEEEEcccccHccccHHHccccccccEEEEccccccccccccccccccEEEEcccHcHHHccHHHcccccccEEEEcccccccccccccccccccEEEEcccHHHHHHHcccccccccccccccEEEEcccEEEEEEcc
MLEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLlqepaaadqpsssantskfrkliptcctnfsprsiQFESKMVSKIKGITDRLQDIITTQkglldsqivisvgksrdvgqrlptpslvnEAKVYGREKEKEEIIELLLnddlraddgfsvisingmagvgKTTLAQLVYNDDRVQRHYEIKAWtcvsedfdvfgVSKFILNSIakdqsnndddLNSLQVKLKERLeweewipcgagqevdeVFPKLRRLSLHRCDKLQGTLPKRLLLLDTLYITSCDQLLMTIQCLPALSKLLihgckrvvfsgpmdlsslksvdlvDIANEVVLAGLFEQDIISLNRlqikgcprllslvteeehdhqqpelpcrlRFLELSYCQGLTKLPQALLTlcsltdmkilgcaslvsfpevalpsqlrTVRIQECNALkslpeawmynsnssleslkirscnslvsfpeialpsqlrTVRIQECNALkslpeawmhnsnsslesleirscdsLTYIAriqlppslkrlivSDCCNLRTLMAEqdicsssrgctsltsfssendlpatlehlevsscsnlaflsrngnlPRALKYLVSLCSKLESLAERldntslegIFIYELEnlkslpaglhnlhhlqkisiadcpnlesfpeeglpstkltelsiRECENLKALPNCMHNLTSLLNLeirrcpsvvsfpedgfptnlkslkvHDLKISKALLEWGSNRFTSLRkleiwgpcpdlvspppfpasLTELWIsfmpdleclsSIGENLTSLKTLRLSYCRKLtyfskeglpKSLLRLYINHcplieercrkdegkywpmishipcveindrwlfdkidf
MLEMIQAVladaedrqtREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLLqepaaadqpsssantskfrKLIPTCCTNFSPRSIQFESKMVSKIKGITDRLQDIITtqkglldsqivisvgksrdvgqrlptpslvneakvygrekeKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSiakdqsnndddLNSLQVKLKERLEWEewipcgagqevdEVFPKLRRLSLHRCDKLQGTLPKRLLLLDTLYITSCDQLLMTIQCLPALSKLLIHGCKRVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFpeialpsqlrTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIAriqlppslkrLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTyfskeglpksLLRLYINHCPLIEERCRKDEGKYWPMIshipcveindrWLFDKIDF
MLEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLLQEPAAADQPSSSANTSKFRKLIPTCCTNFSPRSIQFESKMVSKIKGITDRLQDIITTQKGLLDSQIVISVGKSRDVGQRLPTPSLVNEAKVYGRekekeeiielllNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKdqsnndddlnslqVKLKERLEWEEWIPCGAGQEVDEVFPKLRRLSLHRCDKLQGTlpkrlllldtlYITSCDQLLMTIQCLPALSKLLIHGCKRVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEINDRWLFDKIDF
*********************VKMWLDNLQNLAYDVQDVLDELETEAL***********************FRKLIPTCCTNFSPRSIQFESKMVSKIKGITDRLQDIITTQKGLLDSQIVISVGKSR***********VNEAKVYGR**EKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIA***********SLQVKLKERLEWEEWIPCGAGQEVDEVFPKLRRLSLHRCDKLQGTLPKRLLLLDTLYITSCDQLLMTIQCLPALSKLLIHGCKRVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEE******PELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHN****LESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSL**********ATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESF*******TKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEINDRWLFDKI**
MLEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQREL******************KFRKLIPTCCTNFSPRSIQFESKMVSKIKGITDRLQDIITTQKGLL**********************LVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSNNDDDLNSLQVKLKERLEWEEWIPCGAGQEVDEVFPKLRRLSLHRCDKLQGTLPKRLLLLDTLYITSCDQLLMTIQCLPALSKLLIHGCKRVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISK**********TSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEINDRWLFDKIDF
MLEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLLQE**************KFRKLIPTCCTNFSPRSIQFESKMVSKIKGITDRLQDIITTQKGLLDSQIVISVGKSRDVGQRLPTPSLVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSNNDDDLNSLQVKLKERLEWEEWIPCGAGQEVDEVFPKLRRLSLHRCDKLQGTLPKRLLLLDTLYITSCDQLLMTIQCLPALSKLLIHGCKRVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVT*********ELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEINDRWLFDKIDF
MLEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLLQEPAAADQPSSSANTSKFRKLIPTCCTNFSPRSIQFESKMVSKIKGITDRLQDIITTQKGLLDSQIV******************VN*AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSNNDDDLNSLQVKLKERLEWEEWIPCGAGQEVDEVFPKLRRLSLHRCDKLQGTLPKRLLLLDTLYITSCDQLLMTIQCLPALSKLLIHGCKRVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEINDRWLFDKIDF
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MLEMIQAVLADAEDRQTREKSVKMWxxxxxxxxxxxxxxxxxxxxxALQRELLLQEPAAADQPSSSANTSKFRKLIPTCCTNFSPRSIQFESKMVSKIKGITDRLQDIITTQKGLLDSQIVISVGKSRDVGQRLPTPSLVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSNNDDDLNSLQVKLKERLEWEEWIPCGAGQEVDEVFPKLRRLSLHRCDKLQGTLPKRLLLLDTLYITSCDQLLMTIQCLPALSKLLIHGCKRVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEINDRWLFDKIDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query857 2.2.26 [Sep-21-2011]
Q7XA40 992 Putative disease resistan N/A no 0.256 0.221 0.358 2e-34
Q9LRR51424 Putative disease resistan yes no 0.401 0.241 0.329 7e-33
Q9LRR4 1054 Putative disease resistan no no 0.261 0.212 0.353 5e-32
Q7XBQ9 970 Disease resistance protei N/A no 0.257 0.227 0.346 6e-31
Q7XA39 988 Putative disease resistan N/A no 0.260 0.225 0.316 9e-30
Q7XA42 979 Putative disease resistan N/A no 0.256 0.224 0.326 9e-29
Q9FJK8908 Probable disease resistan no no 0.284 0.268 0.261 2e-18
P0C8S1906 Probable disease resistan no no 0.256 0.242 0.285 5e-17
Q9FJB5901 Disease resistance RPP8-l no no 0.270 0.257 0.269 7e-17
Q8W4J9908 Disease resistance protei no no 0.247 0.233 0.267 4e-16
>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 Back     alignment and function desciption
 Score =  148 bits (373), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 142/254 (55%), Gaps = 34/254 (13%)

Query: 1   MLEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLLQEPAAA 60
           M  MIQAVL DA+++Q + K++K WL  L   AY+V D+LD+ +TEA             
Sbjct: 37  MFSMIQAVLEDAQEKQLKYKAIKNWLQKLNVAAYEVDDILDDCKTEA------------- 83

Query: 61  DQPSSSANTSKFRKLIPTCCTNFSPRSIQFESKMVSKIKGITDRLQDIITTQKGL-LDSQ 119
                    ++F++ +      + PR+I F  K+  ++K + ++L  I   ++   LD +
Sbjct: 84  ---------ARFKQAV---LGRYHPRTITFCYKVGKRMKEMMEKLDAIAEERRNFHLDER 131

Query: 120 IVISVGKSRDVGQRLPTPSLVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMA 179
           I+      R  G  L  P      KVYGREKE++EI+++L+N+ +   +   V+ I GM 
Sbjct: 132 IIERQAARRQTGFVLTEP------KVYGREKEEDEIVKILINN-VSYSEEVPVLPILGMG 184

Query: 180 GVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSNNDDDLNSL 239
           G+GKTTLAQ+V+ND R+  H+ +K W CVS+DFD   + K I+ SI + +S  D DL  L
Sbjct: 185 GLGKTTLAQMVFNDQRITEHFNLKIWVCVSDDFDEKRLIKAIVESI-EGKSLGDMDLAPL 243

Query: 240 QVKLKERLEWEEWI 253
           Q KL+E L  + + 
Sbjct: 244 QKKLQELLNGKRYF 257
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)
>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 Back     alignment and function description
>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 Back     alignment and function description
>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 Back     alignment and function description
>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 Back     alignment and function description
>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1 Back     alignment and function description
>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query857
359487178819 PREDICTED: putative disease resistance p 0.815 0.853 0.329 1e-100
359495026 2204 PREDICTED: uncharacterized protein LOC10 0.817 0.318 0.336 9e-97
284026888 1424 CC-NBS-LRR protein [Quercus suber] 0.612 0.368 0.367 2e-82
224132254552 predicted protein [Populus trichocarpa] 0.590 0.916 0.389 3e-79
147787628 1420 hypothetical protein VITISV_019639 [Viti 0.663 0.400 0.348 5e-78
356554923 1399 PREDICTED: putative disease resistance R 0.595 0.364 0.354 1e-77
359487180 1629 PREDICTED: putative disease resistance R 0.690 0.363 0.340 7e-77
45826061739 resistance protein [Quercus suber] 0.441 0.511 0.437 2e-71
224059584 1418 cc-nbs-lrr resistance protein [Populus t 0.633 0.382 0.343 2e-71
359495024 1390 PREDICTED: putative disease resistance p 0.613 0.378 0.366 1e-70
>gi|359487178|ref|XP_003633527.1| PREDICTED: putative disease resistance protein RGA1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 305/926 (32%), Positives = 442/926 (47%), Gaps = 227/926 (24%)

Query: 1   MLEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLLQEPAAA 60
           +L  I AVL DAED+Q     VKMWL +L++LAYD++D+LD+  T+AL+R L++ +P   
Sbjct: 45  ILMKIYAVLHDAEDKQMTNPLVKMWLHDLRDLAYDLEDILDDFATQALRRNLIVAQP--- 101

Query: 61  DQPSSSANTSKFRKLIPTCCTNFSPRSIQFESKMVSKIKGITDRLQDIITTQKGLLDSQI 120
            QP     T   R ++    T+ +  +      M SKI+ IT RLQDI + QK  LD + 
Sbjct: 102 -QPP----TGTVRSILSYVSTSLTLSAAWSNLSMGSKIEEITARLQDI-SAQKKHLDLRD 155

Query: 121 VISVGKSRDVGQRLPTPSLVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAG 180
           V +    R   +RLP+ SLV E+++YGRE +K  I+ +LL DD  +DD   VI I GM G
Sbjct: 156 VSAGWSGRKRLRRLPSTSLVIESRIYGRETDKAAILAMLLKDD-PSDDEVCVIPIVGMGG 214

Query: 181 VGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSNNDDDLNSLQ 240
           +GKTTLAQL +NDD+V+ H++++AW CVS+DFDV  V+K IL S++   +   ++LN LQ
Sbjct: 215 IGKTTLAQLAFNDDKVKDHFDLRAWVCVSDDFDVLRVTKTILQSLSP-HTRYANNLNLLQ 273

Query: 241 VKLKERL---------------EWEEW----IPCGAGQEVDEV----------------- 264
           ++L+E+L                ++EW    +P  AG    ++                 
Sbjct: 274 IELREKLYRKKFLLILDDVWNENFDEWDILCMPMRAGASGSKLIVTTRNKGVVSVTGTCS 333

Query: 265 -----------------FPKLRRLSLHRCDKLQGTLPKRLLLLDTLYITSCDQLLMTIQC 307
                            FP LR L++ RC KL   LP                      C
Sbjct: 334 AYPLQELSYDDYEQVGPFPFLRELTIRRCSKLGIQLP---------------------DC 372

Query: 308 LPALSKLLIHGCK--RVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKG 365
           LP+L KL I GC   +V FSG    +SL  + L +    V  +G+       L  L I  
Sbjct: 373 LPSLVKLDIFGCPNLKVPFSG---FASLGELSLEECEGVVFRSGVGS----CLETLAIGR 425

Query: 366 CPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLV 425
           C  L++L        ++  LPC+L+ L++  C  L +LP  L +L SL ++K+  C  L+
Sbjct: 426 CHWLVTL--------EEQMLPCKLKILKIQDCANLEELPNGLQSLISLQELKLERCPKLI 477

Query: 426 SFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQL 485
           SFPE AL   LR++ +Q                          +C SL+ FP   LP+ L
Sbjct: 478 SFPEAALSPLLRSLVLQ--------------------------NCPSLICFPNGELPTTL 511

Query: 486 RTVRIQECNALKSLPEAWMHNSNSS--------LESLEIRSCDSLTYIARIQLPPSLKRL 537
           + +R+++C  L+SLPE  MH+ +SS        LE L I++C SL +    +LP +L+ L
Sbjct: 512 KHMRVEDCENLESLPEGMMHHKSSSTVSKNTCCLEKLWIKNCASLKFFPTGELPSTLELL 571

Query: 538 IVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLP--ATLEHLEVSSCSNLAFLSRNG 595
            +  C NL ++                    SE  LP    LE+L++    NL       
Sbjct: 572 CIWGCANLESI--------------------SEKMLPNGTALEYLDIRGYPNLKI----- 606

Query: 596 NLPRALKYLVSL----CSKLESLAER-LDNTSLEGIFIYELENLKSLPAGLHNLHHLQKI 650
            LP  L  L  L    C   E   +R L   +L  + I+   NL+SLP  + NL  +  +
Sbjct: 607 -LPECLTSLKELHIDDCGGQECFPKRGLSTPNLMHLRIWRCVNLRSLPQQMKNLTSVHTL 665

Query: 651 SIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFP 710
           SI  CP +ESFPE GLP   LT L +  C+NLK                           
Sbjct: 666 SIWGCPGVESFPEGGLPPN-LTSLYVGLCQNLKT-------------------------- 698

Query: 711 EDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLT 766
                                + EWG    TSL +L I G  P++ S        P SLT
Sbjct: 699 --------------------PISEWGLLTLTSLSELSICGVFPNMASFSDEECLLPPSLT 738

Query: 767 ELWISFMPDLECLSSIG-ENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCPLIEE 825
            L+IS   +LE L+S+  +N  SL  L +  C KL+      LP +L RL I  CP+I+E
Sbjct: 739 YLFIS---ELESLTSLALQNPMSLTELGIECCCKLSSLE---LPATLGRLEITGCPIIKE 792

Query: 826 RCRKDEGKYWPMISHIPCVEINDRWL 851
            C K++G YWP  SHIPC++I+  ++
Sbjct: 793 SCLKEKGGYWPNFSHIPCIQIDGSYI 818

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359495026|ref|XP_003634900.1| PREDICTED: uncharacterized protein LOC100854556 [Vitis vinifera] Back     alignment and taxonomy information
>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber] Back     alignment and taxonomy information
>gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147787628|emb|CAN62744.1| hypothetical protein VITISV_019639 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|359487180|ref|XP_002268806.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber] Back     alignment and taxonomy information
>gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359495024|ref|XP_002267933.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query857
TAIR|locus:20916621424 AT3G14460 [Arabidopsis thalian 0.369 0.222 0.346 5e-49
TAIR|locus:2091672 1054 AT3G14470 [Arabidopsis thalian 0.168 0.136 0.352 5.5e-29
UNIPROTKB|O486471802 O48647 "XA1" [Oryza sativa (ta 0.473 0.225 0.280 2.7e-22
TAIR|locus:2094498 1981 AT3G25510 [Arabidopsis thalian 0.495 0.214 0.256 2.2e-21
TAIR|locus:2175991 1294 AT5G17680 [Arabidopsis thalian 0.465 0.308 0.273 1.2e-20
TAIR|locus:2130270 1449 RPP5 "RECOGNITION OF PERONOSPO 0.556 0.329 0.265 1.7e-19
TAIR|locus:21634261187 TAO1 "target of AVRB operation 0.336 0.242 0.266 3e-19
TAIR|locus:2053405 1215 AT2G14080 [Arabidopsis thalian 0.465 0.328 0.254 8e-19
TAIR|locus:2130250 1304 AT4G16920 [Arabidopsis thalian 0.568 0.373 0.265 6.6e-18
TAIR|locus:2129236 1301 SNC1 "SUPPRESSOR OF NPR1-1, CO 0.554 0.365 0.248 4.1e-17
TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 367 (134.2 bits), Expect = 5.0e-49, Sum P(4) = 5.0e-49
 Identities = 121/349 (34%), Positives = 179/349 (51%)

Query:   510 SLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSS 569
             +L+SL I SCD LT      LP +L         NL  L+    I +    C SL SF  
Sbjct:  1092 NLQSLHIDSCDGLT-----SLPENL----TESYPNLHELL----IIA----CHSLESFPG 1134

Query:   570 ENDLPATLEHLEVSSCSNLAFLS--RNGNLPRALKYLV--SLCSKLESLAERLDNTSLEG 625
              +  P TL+ L +  C  L F    +       L+YL   S CS L +    L    L  
Sbjct:  1135 SHP-PTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGSSCSNLVNFPLSLF-PKLRS 1192

Query:   626 IFIYELENLK--SLPAGLHNLH-HLQKISIADCPNLESFPEEGLPSTKLTELSIRECENL 682
             + I + E+ K  S+ AGL +    L+ + I DCPNLE+FP+ GLP+ KL+ + +  C+ L
Sbjct:  1193 LSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKL 1252

Query:   683 KALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTS 742
             +ALP  +  LTSLL+L I +CP + + P  GFP+NL++L +         +EWG     +
Sbjct:  1253 QALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCISLCDKLTPRIEWGLRDLEN 1312

Query:   743 LRKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLECLSSIGENLT-SLKTLRLSYCR 798
             LR LEI G   D+ S P     P S+  L IS   +L+ L+  G + T +++T+ +S C 
Sbjct:  1313 LRNLEIDGGNEDIESFPEEGLLPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCD 1372

Query:   799 KLTYFSKEGLPKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEIN 847
             KL     E LP  L  L I+ C L+ E   + E +++ +++ IP VEI+
Sbjct:  1373 KLQISIDEDLPP-LSCLRISSCSLLTETFAEVETEFFKVLN-IPYVEID 1419
GO:0005634 "nucleus" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0043531 "ADP binding" evidence=IEA
TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130250 AT4G16920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query857
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 4e-20
PLN03210 1153 PLN03210, PLN03210, Resistant to P 3e-15
PLN03210 1153 PLN03210, PLN03210, Resistant to P 7e-11
PLN032101153 PLN03210, PLN03210, Resistant to P 3e-09
PLN03210 1153 PLN03210, PLN03210, Resistant to P 6e-07
PRK15370 754 PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl 6e-06
PRK15386426 PRK15386, PRK15386, type III secretion protein Gog 1e-05
pfam13191154 pfam13191, AAA_16, AAA ATPase domain 0.004
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information 
 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 16/117 (13%)

Query: 148 REKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTC 207
           RE   E +IE LL       D   V+ I GM GVGKTTLA+ +YNDD V  H++  AW  
Sbjct: 1   REDMIEALIEKLLEMS----DNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVV 56

Query: 208 VSEDFDVFGVSKFILNSIAKDQSN-NDDDLNSLQVKLKERLE-----------WEEW 252
           VS+ +  F + K IL  +  D S+  + + + L VK+KE L            WE+ 
Sbjct: 57  VSKTYTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWEKN 113

Length = 285
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional Back     alignment and domain information
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 857
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 100.0
PLN03210 1153 Resistant to P. syringae 6; Provisional 100.0
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.97
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.96
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.91
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.84
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.8
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.79
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.79
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.78
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.78
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.72
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.7
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.56
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.53
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 99.33
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 99.33
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 99.29
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 99.19
KOG0617264 consensus Ras suppressor protein (contains leucine 99.17
KOG0617264 consensus Ras suppressor protein (contains leucine 99.04
KOG4341483 consensus F-box protein containing LRR [General fu 98.93
KOG4341483 consensus F-box protein containing LRR [General fu 98.87
KOG4237498 consensus Extracellular matrix protein slit, conta 98.78
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 98.69
PRK15386 426 type III secretion protein GogB; Provisional 98.65
KOG4237498 consensus Extracellular matrix protein slit, conta 98.63
PRK15386 426 type III secretion protein GogB; Provisional 98.61
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 98.52
PRK09376416 rho transcription termination factor Rho; Provisio 98.27
cd01128249 rho_factor Transcription termination factor rho is 98.21
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.2
PTZ00202550 tuzin; Provisional 98.19
KOG3207 505 consensus Beta-tubulin folding cofactor E [Posttra 98.17
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 98.16
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.04
KOG1259490 consensus Nischarin, modulator of integrin alpha5 97.99
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 97.97
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.88
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 97.85
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 97.8
PRK11331459 5-methylcytosine-specific restriction enzyme subun 97.79
PRK00411394 cdc6 cell division control protein 6; Reviewed 97.76
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 97.74
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.71
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 97.7
PRK08118167 topology modulation protein; Reviewed 97.7
TIGR02928365 orc1/cdc6 family replication initiation protein. M 97.68
TIGR00767415 rho transcription termination factor Rho. Members 97.68
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 97.63
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 97.49
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 97.48
PLN03150623 hypothetical protein; Provisional 97.45
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 97.41
PLN03150623 hypothetical protein; Provisional 97.35
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 97.33
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 97.31
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.13
KOG1947482 consensus Leucine rich repeat proteins, some prote 97.12
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.09
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 97.02
KOG1947482 consensus Leucine rich repeat proteins, some prote 97.01
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 96.95
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 96.91
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 96.88
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 96.86
KOG2982418 consensus Uncharacterized conserved protein [Funct 96.81
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 96.8
KOG2028554 consensus ATPase related to the helicase subunit o 96.78
PRK07261171 topology modulation protein; Provisional 96.77
PTZ001121164 origin recognition complex 1 protein; Provisional 96.76
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 96.67
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 96.67
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 96.66
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 96.58
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 96.51
PRK13342413 recombination factor protein RarA; Reviewed 96.46
PRK06696223 uridine kinase; Validated 96.39
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 96.34
COG2256436 MGS1 ATPase related to the helicase subunit of the 96.28
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 96.24
COG2255332 RuvB Holliday junction resolvasome, helicase subun 96.18
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 96.17
PTZ00301210 uridine kinase; Provisional 96.03
PRK07667193 uridine kinase; Provisional 96.0
KOG2543438 consensus Origin recognition complex, subunit 5 [R 95.98
COG1618179 Predicted nucleotide kinase [Nucleotide transport 95.88
PF05729166 NACHT: NACHT domain 95.87
PRK15455644 PrkA family serine protein kinase; Provisional 95.84
PLN03025319 replication factor C subunit; Provisional 95.84
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 95.84
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 95.81
KOG0531 414 consensus Protein phosphatase 1, regulatory subuni 95.74
COG1428216 Deoxynucleoside kinases [Nucleotide transport and 95.62
TIGR00763775 lon ATP-dependent protease La. This protein is ind 95.6
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 95.57
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 95.57
PRK05564313 DNA polymerase III subunit delta'; Validated 95.57
PF00485194 PRK: Phosphoribulokinase / Uridine kinase family; 95.56
PRK13341725 recombination factor protein RarA/unknown domain f 95.55
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 95.54
PRK00440319 rfc replication factor C small subunit; Reviewed 95.53
KOG2004906 consensus Mitochondrial ATP-dependent protease PIM 95.5
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 95.5
PF13173128 AAA_14: AAA domain 95.48
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 95.48
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 95.41
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 95.4
PRK05480209 uridine/cytidine kinase; Provisional 95.38
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 95.38
TIGR00235207 udk uridine kinase. Model contains a number of lon 95.34
PRK04195482 replication factor C large subunit; Provisional 95.32
PHA02544316 44 clamp loader, small subunit; Provisional 95.32
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 95.3
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 95.29
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 95.23
PRK09270229 nucleoside triphosphate hydrolase domain-containin 95.22
PHA00729226 NTP-binding motif containing protein 95.21
COG0572218 Udk Uridine kinase [Nucleotide transport and metab 95.2
PRK06547172 hypothetical protein; Provisional 95.19
PRK12402337 replication factor C small subunit 2; Reviewed 95.17
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 95.15
PRK08233182 hypothetical protein; Provisional 95.15
KOG2982 418 consensus Uncharacterized conserved protein [Funct 95.15
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 95.13
PRK03992389 proteasome-activating nucleotidase; Provisional 95.02
PRK05541176 adenylylsulfate kinase; Provisional 94.97
cd0201969 NK Nucleoside/nucleotide kinase (NK) is a protein 94.96
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 94.89
cd01878204 HflX HflX subfamily. A distinct conserved domain w 94.88
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 94.83
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 94.78
CHL00095821 clpC Clp protease ATP binding subunit 94.71
PRK13531498 regulatory ATPase RavA; Provisional 94.64
PRK04040188 adenylate kinase; Provisional 94.56
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 94.5
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 94.49
PRK06762166 hypothetical protein; Provisional 94.44
cd02024187 NRK1 Nicotinamide riboside kinase (NRK) is an enzy 94.44
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 94.42
PRK06893229 DNA replication initiation factor; Validated 94.4
CHL00181287 cbbX CbbX; Provisional 94.38
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 94.37
TIGR02237209 recomb_radB DNA repair and recombination protein R 94.37
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 94.35
TIGR00554290 panK_bact pantothenate kinase, bacterial type. Sho 94.32
PRK08727233 hypothetical protein; Validated 94.31
TIGR01360188 aden_kin_iso1 adenylate kinase, isozyme 1 subfamil 94.28
cd02023198 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. 94.25
PRK08903227 DnaA regulatory inactivator Hda; Validated 94.22
cd02025220 PanK Pantothenate kinase (PanK) catalyzes the phos 94.19
PRK10865857 protein disaggregation chaperone; Provisional 94.19
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 94.18
PRK08084235 DNA replication initiation factor; Provisional 94.18
PRK03839180 putative kinase; Provisional 94.15
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 94.13
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 94.12
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.12
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 94.11
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 94.08
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 94.06
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 94.06
smart00382148 AAA ATPases associated with a variety of cellular 94.05
KOG2123388 consensus Uncharacterized conserved protein [Funct 94.05
COG1936180 Predicted nucleotide kinase (related to CMP and AM 94.03
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 94.02
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309127 Torsin: Torsin; InterPro: IPR010448 This family co 94.01
PRK10536262 hypothetical protein; Provisional 93.96
COG3640255 CooC CO dehydrogenase maturation factor [Cell divi 93.92
PF03205140 MobB: Molybdopterin guanine dinucleotide synthesis 93.91
PRK00625173 shikimate kinase; Provisional 93.9
KOG1532366 consensus GTPase XAB1, interacts with DNA repair p 93.87
TIGR00150133 HI0065_YjeE ATPase, YjeE family. Members of this f 93.85
PRK00889175 adenylylsulfate kinase; Provisional 93.82
PRK05439311 pantothenate kinase; Provisional 93.82
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 93.8
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 93.78
KOG2123388 consensus Uncharacterized conserved protein [Funct 93.77
cd02028179 UMPK_like Uridine monophosphate kinase_like (UMPK_ 93.73
PF07726131 AAA_3: ATPase family associated with various cellu 93.73
COG2019189 AdkA Archaeal adenylate kinase [Nucleotide transpo 93.63
PF08298358 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi 93.61
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 93.6
PRK05642234 DNA replication initiation factor; Validated 93.59
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 93.57
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 93.56
PF00004132 AAA: ATPase family associated with various cellula 93.56
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 93.52
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 93.51
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 93.49
PRK12377248 putative replication protein; Provisional 93.48
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 93.43
PF03193161 DUF258: Protein of unknown function, DUF258; Inter 93.41
PRK10751173 molybdopterin-guanine dinucleotide biosynthesis pr 93.41
cd01133274 F1-ATPase_beta F1 ATP synthase beta subunit, nucle 93.41
PRK03846198 adenylylsulfate kinase; Provisional 93.4
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 93.38
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 93.38
PRK06217183 hypothetical protein; Validated 93.35
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 93.34
PRK00131175 aroK shikimate kinase; Reviewed 93.32
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 93.29
PRK10463290 hydrogenase nickel incorporation protein HypB; Pro 93.27
COG1100219 GTPase SAR1 and related small G proteins [General 93.27
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 93.27
cd02020147 CMPK Cytidine monophosphate kinase (CMPK) catalyze 93.24
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 93.24
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 93.24
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 93.23
PRK09361225 radB DNA repair and recombination protein RadB; Pr 93.22
TIGR00176155 mobB molybdopterin-guanine dinucleotide biosynthes 93.18
TIGR02322179 phosphon_PhnN phosphonate metabolism protein/1,5-b 93.18
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 93.18
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 93.17
PRK13695174 putative NTPase; Provisional 93.15
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 93.13
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 93.13
TIGR01287275 nifH nitrogenase iron protein. This model describe 93.1
PRK13768253 GTPase; Provisional 93.09
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 93.07
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 93.07
PF08477119 Miro: Miro-like protein; InterPro: IPR013684 Mitoc 93.06
PRK13949169 shikimate kinase; Provisional 93.03
PRK13236296 nitrogenase reductase; Reviewed 93.01
TIGR00073207 hypB hydrogenase accessory protein HypB. HypB is i 92.97
PRK13947171 shikimate kinase; Provisional 92.93
COG1102179 Cmk Cytidylate kinase [Nucleotide transport and me 92.92
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 92.87
PF03308266 ArgK: ArgK protein; InterPro: IPR005129 Bacterial 92.81
TIGR01359183 UMP_CMP_kin_fam UMP-CMP kinase family. This subfam 92.81
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 92.8
cd0198399 Fer4_NifH The Fer4_NifH superfamily contains a var 92.8
PF01926116 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I 92.7
PRK00300205 gmk guanylate kinase; Provisional 92.65
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 92.65
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 92.64
PRK09087226 hypothetical protein; Validated 92.63
PRK07952244 DNA replication protein DnaC; Validated 92.62
PRK06620214 hypothetical protein; Validated 92.6
cd02021150 GntK Gluconate kinase (GntK) catalyzes the phospho 92.59
cd00464154 SK Shikimate kinase (SK) is the fifth enzyme in th 92.58
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 92.57
PLN02318656 phosphoribulokinase/uridine kinase 92.55
PF00142273 Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot 92.54
COG0194191 Gmk Guanylate kinase [Nucleotide transport and met 92.51
PLN02348395 phosphoribulokinase 92.47
PRK10078186 ribose 1,5-bisphosphokinase; Provisional 92.46
PRK12608380 transcription termination factor Rho; Provisional 92.43
cd00820107 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC 92.42
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 92.39
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 92.37
cd02117212 NifH_like This family contains the NifH (iron prot 92.37
PRK05057172 aroK shikimate kinase I; Reviewed 92.37
PRK12339197 2-phosphoglycerate kinase; Provisional 92.36
cd03114148 ArgK-like The function of this protein family is u 92.36
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 92.35
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 92.35
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 92.33
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 92.32
TIGR00064272 ftsY signal recognition particle-docking protein F 92.32
PF01583156 APS_kinase: Adenylylsulphate kinase; InterPro: IPR 92.3
COG0003322 ArsA Predicted ATPase involved in chromosome parti 92.3
PF04665241 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 92.29
COG0237201 CoaE Dephospho-CoA kinase [Coenzyme metabolism] 92.29
cd00071137 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. 92.29
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 92.27
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 92.27
cd04139164 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) 92.25
PF00005137 ABC_tran: ABC transporter This structure is on hol 92.24
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 92.22
cd00227175 CPT Chloramphenicol (Cm) phosphotransferase (CPT). 92.22
PRK13765637 ATP-dependent protease Lon; Provisional 92.22
PRK14493274 putative bifunctional molybdopterin-guanine dinucl 92.22
COG1763161 MobB Molybdopterin-guanine dinucleotide biosynthes 92.21
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 92.21
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 92.19
COG1703323 ArgK Putative periplasmic protein kinase ArgK and 92.19
PRK13230279 nitrogenase reductase-like protein; Reviewed 92.18
KOG3864221 consensus Uncharacterized conserved protein [Funct 92.18
PRK13975196 thymidylate kinase; Provisional 92.17
cd01393226 recA_like RecA is a bacterial enzyme which has rol 92.15
cd01858157 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei 92.09
PRK14738206 gmk guanylate kinase; Provisional 92.09
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 92.09
PRK09435332 membrane ATPase/protein kinase; Provisional 92.06
COG1124252 DppF ABC-type dipeptide/oligopeptide/nickel transp 92.03
TIGR01313163 therm_gnt_kin carbohydrate kinase, thermoresistant 91.98
cd01394218 radB RadB. The archaeal protein radB shares simila 91.96
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 91.92
TIGR00750300 lao LAO/AO transport system ATPase. Mutations have 91.9
PRK13407334 bchI magnesium chelatase subunit I; Provisional 91.9
cd02022179 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2 91.88
PRK13946184 shikimate kinase; Provisional 91.87
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 91.84
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 91.83
PF10662143 PduV-EutP: Ethanolamine utilisation - propanediol 91.8
PRK13232273 nifH nitrogenase reductase; Reviewed 91.8
cd01862172 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th 91.79
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 91.71
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 91.69
PRK14530215 adenylate kinase; Provisional 91.66
PRK00771437 signal recognition particle protein Srp54; Provisi 91.63
PRK08116268 hypothetical protein; Validated 91.6
PRK10416318 signal recognition particle-docking protein FtsY; 91.58
KOG3347176 consensus Predicted nucleotide kinase/nuclear prot 91.57
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 91.54
cd02034116 CooC The accessory protein CooC, which contains a 91.54
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 91.5
PRK08099399 bifunctional DNA-binding transcriptional repressor 91.5
cd02040270 NifH NifH gene encodes component II (iron protein) 91.49
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 91.49
cd02027149 APSK Adenosine 5'-phosphosulfate kinase (APSK) cat 91.48
PRK13948182 shikimate kinase; Provisional 91.48
cd03116159 MobB Molybdenum is an essential trace element in t 91.48
PRK09825176 idnK D-gluconate kinase; Provisional 91.4
KOG0736953 consensus Peroxisome assembly factor 2 containing 91.4
cd01672200 TMPK Thymidine monophosphate kinase (TMPK), also k 91.4
PLN02796347 D-glycerate 3-kinase 91.37
cd04155173 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f 91.35
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 91.33
PF00625183 Guanylate_kin: Guanylate kinase; InterPro: IPR0081 91.3
COG0563178 Adk Adenylate kinase and related kinases [Nucleoti 91.29
PF13521163 AAA_28: AAA domain; PDB: 1LW7_A. 91.27
TIGR00362405 DnaA chromosomal replication initiator protein Dna 91.25
PRK03731171 aroL shikimate kinase II; Reviewed 91.19
COG1120258 FepC ABC-type cobalamin/Fe3+-siderophores transpor 91.18
TIGR02173171 cyt_kin_arch cytidylate kinase, putative. Proteins 91.15
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 91.13
PF03029238 ATP_bind_1: Conserved hypothetical ATP binding pro 91.11
PRK13233275 nifH nitrogenase reductase; Reviewed 91.08
PF06564243 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p 91.04
PRK07940394 DNA polymerase III subunit delta'; Validated 91.01
PHA02575227 1 deoxynucleoside monophosphate kinase; Provisiona 91.0
PRK13235274 nifH nitrogenase reductase; Reviewed 90.98
PRK04182180 cytidylate kinase; Provisional 90.96
PRK10865857 protein disaggregation chaperone; Provisional 90.96
TIGR01281268 DPOR_bchL light-independent protochlorophyllide re 90.9
cd00876160 Ras Ras family. The Ras family of the Ras superfam 90.9
PRK14974336 cell division protein FtsY; Provisional 90.88
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 90.87
KOG0927614 consensus Predicted transporter (ABC superfamily) 90.86
PLN02924220 thymidylate kinase 90.85
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 90.81
cd00878158 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik 90.81
PRK08939306 primosomal protein DnaI; Reviewed 90.79
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 90.78
PRK08356195 hypothetical protein; Provisional 90.77
cd04113161 Rab4 Rab4 subfamily. Rab4 has been implicated in n 90.77
PF03266168 NTPase_1: NTPase; InterPro: IPR004948 This entry r 90.74
TIGR02016296 BchX chlorophyllide reductase iron protein subunit 90.71
cd03115173 SRP The signal recognition particle (SRP) mediates 90.7
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 90.7
COG3638258 ABC-type phosphate/phosphonate transport system, A 90.64
smart00173164 RAS Ras subfamily of RAS small GTPases. Similar in 90.62
cd04119168 RJL RJL (RabJ-Like) subfamily. RJLs are found in m 90.62
PLN02200234 adenylate kinase family protein 90.62
smart00175164 RAB Rab subfamily of small GTPases. Rab GTPases ar 90.61
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 90.61
cd03255218 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of 90.57
PRK04301317 radA DNA repair and recombination protein RadA; Va 90.56
PLN03046460 D-glycerate 3-kinase; Provisional 90.54
cd03297214 ABC_ModC_molybdenum_transporter ModC is an ABC-typ 90.52
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 90.52
COG1348278 NifH Nitrogenase subunit NifH (ATPase) [Inorganic 90.52
cd02026273 PRK Phosphoribulokinase (PRK) is an enzyme involve 90.51
TIGR01166190 cbiO cobalt transport protein ATP-binding subunit. 90.51
PRK14527191 adenylate kinase; Provisional 90.51
PRK09112351 DNA polymerase III subunit delta'; Validated 90.51
KOG3864221 consensus Uncharacterized conserved protein [Funct 90.51
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 90.5
TIGR00231161 small_GTP small GTP-binding protein domain. This m 90.49
PRK13231264 nitrogenase reductase-like protein; Reviewed 90.47
cd00983325 recA RecA is a bacterial enzyme which has roles in 90.47
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 90.46
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 90.45
cd01888203 eIF2_gamma eIF2-gamma (gamma subunit of initiation 90.43
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 90.43
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 90.43
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 90.42
cd03225211 ABC_cobalt_CbiO_domain1 Domain I of the ABC compon 90.42
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 90.39
PRK06761282 hypothetical protein; Provisional 90.38
cd00154159 Rab Rab family. Rab GTPases form the largest famil 90.37
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 90.36
PRK00149450 dnaA chromosomal replication initiation protein; R 90.36
PRK09183259 transposase/IS protein; Provisional 90.36
PRK07429327 phosphoribulokinase; Provisional 90.36
cd00879190 Sar1 Sar1 subfamily. Sar1 is an essential componen 90.36
PRK14490369 putative bifunctional molybdopterin-guanine dinucl 90.35
TIGR02528142 EutP ethanolamine utilization protein, EutP. This 90.33
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 90.31
PRK08181269 transposase; Validated 90.31
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 90.3
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 90.29
cd04163168 Era Era subfamily. Era (E. coli Ras-like protein) 90.26
TIGR02236310 recomb_radA DNA repair and recombination protein R 90.25
cd04159159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was id 90.25
PRK06835329 DNA replication protein DnaC; Validated 90.24
cd02042104 ParA ParA and ParB of Caulobacter crescentus belon 90.22
COG1126240 GlnQ ABC-type polar amino acid transport system, A 90.21
smart00178184 SAR Sar1p-like members of the Ras-family of small 90.19
TIGR00960216 3a0501s02 Type II (General) Secretory Pathway (IIS 90.16
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 90.16
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 90.15
PLN02165334 adenylate isopentenyltransferase 90.13
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 90.12
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 90.11
TIGR02012321 tigrfam_recA protein RecA. This model describes or 90.08
cd01876170 YihA_EngB The YihA (EngB) subfamily. This subfamil 90.07
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 90.06
COG1116248 TauB ABC-type nitrate/sulfonate/bicarbonate transp 90.03
COG4167267 SapF ABC-type antimicrobial peptide transport syst 90.03
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 89.99
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 89.97
cd01864165 Rab19 Rab19 subfamily. Rab19 proteins are associat 89.96
cd01860163 Rab5_related Rab5-related subfamily. This subfamil 89.95
PF02374305 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_ 89.95
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 89.95
cd04124161 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily 89.91
cd01898170 Obg Obg subfamily. The Obg nucleotide binding prot 89.91
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 89.89
TIGR00455184 apsK adenylylsulfate kinase (apsK). Important resi 89.88
PF00071162 Ras: Ras family; InterPro: IPR001806 Small GTPases 89.87
PRK06921266 hypothetical protein; Provisional 89.87
KOG0734752 consensus AAA+-type ATPase containing the peptidas 89.85
PRK08154309 anaerobic benzoate catabolism transcriptional regu 89.84
cd04138162 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, 89.84
cd04153174 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a 89.84
cd03269210 ABC_putative_ATPase This subfamily is involved in 89.83
TIGR01618220 phage_P_loop phage nucleotide-binding protein. Thi 89.8
PRK06851367 hypothetical protein; Provisional 89.79
PRK15453290 phosphoribulokinase; Provisional 89.77
PRK06526254 transposase; Provisional 89.76
cd01892169 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr 89.75
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 89.74
PRK14737186 gmk guanylate kinase; Provisional 89.73
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 89.73
cd02032267 Bchl_like This family of proteins contains bchL an 89.71
cd03259213 ABC_Carb_Solutes_like ABC Carbohydrate and Solute 89.7
PRK00454196 engB GTP-binding protein YsxC; Reviewed 89.69
cd03261235 ABC_Org_Solvent_Resistant ABC (ATP-binding cassett 89.69
KOG1969877 consensus DNA replication checkpoint protein CHL12 89.69
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 89.68
TIGR00101199 ureG urease accessory protein UreG. This model rep 89.67
PRK01184184 hypothetical protein; Provisional 89.67
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 89.65
PRK14087450 dnaA chromosomal replication initiation protein; P 89.65
cd04123162 Rab21 Rab21 subfamily. The localization and functi 89.63
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 89.63
PRK13541195 cytochrome c biogenesis protein CcmA; Provisional 89.63
cd03235213 ABC_Metallic_Cations ABC component of the metal-ty 89.63
COG0714329 MoxR-like ATPases [General function prediction onl 89.62
cd04177168 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the 89.6
cd03260227 ABC_PstB_phosphate_transporter Phosphate uptake is 89.59
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 89.59
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 89.53
TIGR02673214 FtsE cell division ATP-binding protein FtsE. This 89.51
COG4107258 PhnK ABC-type phosphonate transport system, ATPase 89.49
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 89.48
PRK10584228 putative ABC transporter ATP-binding protein YbbA; 89.48
PRK14088440 dnaA chromosomal replication initiation protein; P 89.48
cd03263220 ABC_subfamily_A The ABCA subfamily mediates the tr 89.48
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 89.46
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 89.46
cd04150159 Arf1_5_like Arf1-Arf5-like subfamily. This subfami 89.46
cd03293220 ABC_NrtD_SsuB_transporters NrtD and SsuB are the A 89.46
PTZ00088229 adenylate kinase 1; Provisional 89.44
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 89.43
PRK13185270 chlL protochlorophyllide reductase iron-sulfur ATP 89.4
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 89.38
cd03237246 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o 89.38
TIGR03598179 GTPase_YsxC ribosome biogenesis GTP-binding protei 89.37
PF07693325 KAP_NTPase: KAP family P-loop domain; InterPro: IP 89.36
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 89.31
cd04140165 ARHI_like ARHI subfamily. ARHI (A Ras homolog memb 89.31
PRK04841 903 transcriptional regulator MalT; Provisional 89.3
cd01428194 ADK Adenylate kinase (ADK) catalyzes the reversibl 89.29
cd04101164 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove 89.28
cd04162164 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 89.25
cd01869166 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev 89.24
COG0488530 Uup ATPase components of ABC transporters with dup 89.22
COG0410237 LivF ABC-type branched-chain amino acid transport 89.19
TIGR03018207 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t 89.18
TIGR03864236 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, 89.18
TIGR00041195 DTMP_kinase thymidylate kinase. Function: phosphor 89.18
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 89.17
PRK07471365 DNA polymerase III subunit delta'; Validated 89.17
cd04160167 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote 89.16
cd03296239 ABC_CysA_sulfate_importer Part of the ABC transpor 89.16
cd03226205 ABC_cobalt_CbiO_domain2 Domain II of the ABC compo 89.13
cd01673193 dNK Deoxyribonucleoside kinase (dNK) catalyzes the 89.12
PRK13234295 nifH nitrogenase reductase; Reviewed 89.11
cd04103158 Centaurin_gamma Centaurin gamma. The centaurins (a 89.11
cd03292214 ABC_FtsE_transporter FtsE is a hydrophilic nucleot 89.09
COG1245591 Predicted ATPase, RNase L inhibitor (RLI) homolog 89.08
cd03256241 ABC_PhnC_transporter ABC-type phosphate/phosphonat 89.07
TIGR02315243 ABC_phnC phosphonate ABC transporter, ATP-binding 89.05
TIGR03574249 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem 89.04
TIGR01184230 ntrCD nitrate transport ATP-binding subunits C and 89.02
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 89.02
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-41  Score=383.66  Aligned_cols=504  Identities=23%  Similarity=0.334  Sum_probs=301.9

Q ss_pred             hhhHHHHHHHHHhcccccHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhhcCCcccCCCCCCccccccccccccccc
Q 003013            2 LEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLLQEPAAADQPSSSANTSKFRKLIPTCCT   81 (857)
Q Consensus         2 l~~i~~~l~~ae~~~~~~~~v~~Wl~~v~~~~~d~edv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (857)
                      |.+++.+++||+.++.....+..|.+.+++++|++||+++.|..+..+.+....-          .......+..  |+.
T Consensus        37 L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l----------~~~~~~~~~~--c~~  104 (889)
T KOG4658|consen   37 LKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLL----------STRSVERQRL--CLC  104 (889)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh----------hhhHHHHHHH--hhh
Confidence            6789999999999999999999999999999999999999999988766432000          0000111121  222


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccceeecccCCccCCCCCCCCCccccCCeeecchhHHHHHHHHHhc
Q 003013           82 NFSPRSIQFESKMVSKIKGITDRLQDIITTQKGLLDSQIVISVGKSRDVGQRLPTPSLVNEAKVYGREKEKEEIIELLLN  161 (857)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~i~~~L~~  161 (857)
                      .++.+.+...|.+++++.++.+.++.+. . +..|...  ..   .....+..++.+...+.. ||.+.+++++++.|+.
T Consensus       105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~-~-~~~~~~~--~~---~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~  176 (889)
T KOG4658|consen  105 GFCSKNVSDSYKYGKRVSKVLREVESLG-S-KGVFEVV--GE---SLDPREKVETRPIQSESD-VGLETMLEKLWNRLME  176 (889)
T ss_pred             hhHhHhhhhhHhHHHHHHHHHHHHHHhc-c-ccceecc--cc---cccchhhcccCCCCcccc-ccHHHHHHHHHHHhcc
Confidence            3444444445556666666655555553 1 1112111  11   011222233445555555 9999999999999987


Q ss_pred             CCCCCCCCceEEEEeccCCcchHHHHHHHhcccc-hhccCCceEEEEeCCCCCHHHHHHHHHHHccCCCCC-CCCChHHH
Q 003013          162 DDLRADDGFSVISINGMAGVGKTTLAQLVYNDDR-VQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSN-NDDDLNSL  239 (857)
Q Consensus       162 ~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~-~~~~Fd~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~  239 (857)
                      +      +..+||||||||+||||||+.|||+.. ++.+||.++||+||++|+..+||++|+..++..... .....+++
T Consensus       177 d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~  250 (889)
T KOG4658|consen  177 D------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDEL  250 (889)
T ss_pred             C------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHH
Confidence            6      339999999999999999999999987 999999999999999999999999999999874432 33445789


Q ss_pred             HHHHHhhc-----------ccc--ccccCC-------CCccc-------------cc--cccccceeeccccchhhcCC-
Q 003013          240 QVKLKERL-----------EWE--EWIPCG-------AGQEV-------------DE--VFPKLRRLSLHRCDKLQGTL-  283 (857)
Q Consensus       240 ~~~l~~~l-----------~w~--~w~~~~-------~~~~i-------------~~--~~~~L~~l~~~~c~~l~~~l-  283 (857)
                      +..|.+.|           .|+  +|...|       .|+++             ++  ...+.+.|..+.||.++... 
T Consensus       251 ~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v  330 (889)
T KOG4658|consen  251 ASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKV  330 (889)
T ss_pred             HHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhh
Confidence            99999988           774  354211       23444             11  12356677788888886321 


Q ss_pred             -c------hhcccccchhcccccchhhhccCCCCc--------------cEE-------------------e--------
Q 003013          284 -P------KRLLLLDTLYITSCDQLLMTIQCLPAL--------------SKL-------------------L--------  315 (857)
Q Consensus       284 -p------~~l~~L~~l~~~~c~~l~~~~~~l~~l--------------~~l-------------------~--------  315 (857)
                       |      ..++.+++..+..|.|+|+++..++.+              ..+                   .        
T Consensus       331 ~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~  410 (889)
T KOG4658|consen  331 GPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE  410 (889)
T ss_pred             ccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH
Confidence             1      126667777889999999887544422              000                   0        


Q ss_pred             -ecC----cccccc---------------cCCCCC------------------------------CCceEEec-------
Q 003013          316 -IHG----CKRVVF---------------SGPMDL------------------------------SSLKSVDL-------  338 (857)
Q Consensus       316 -l~~----~~~~~~---------------~~~~~l------------------------------~~L~~l~l-------  338 (857)
                       +..    |...+.               .++.+-                              .+...-.+       
T Consensus       411 ~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~  490 (889)
T KOG4658|consen  411 ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREM  490 (889)
T ss_pred             HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHH
Confidence             000    000000               000000                              00000000       


Q ss_pred             -----------------C------Ccccc----------------eeehhhhhhcCCCCCeEeccCCCC-cccccccccc
Q 003013          339 -----------------V------DIANE----------------VVLAGLFEQDIISLNRLQIKGCPR-LLSLVTEEEH  378 (857)
Q Consensus       339 -----------------~------~~~~~----------------~~~~~~~~~~~~~L~~L~l~~~~~-l~~l~~~~~~  378 (857)
                                       .      ...+.                ..++..  ...+.|+.|-+..... +..++..   
T Consensus       491 al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~---  565 (889)
T KOG4658|consen  491 ALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGE---  565 (889)
T ss_pred             HHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHH---
Confidence                             0      00000                001111  2223466665555332 2222111   


Q ss_pred             cCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC-CCCCCCCcceeeccccccccccchhhhcC
Q 003013          379 DHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP-EVALPSQLRTVRIQECNALKSLPEAWMYN  457 (857)
Q Consensus       379 ~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  457 (857)
                        .+..+ +.|++|+|++|..+..+|.+++.+.+||+|+++++ .+..+| .++++..|.+|++..+..+..+|..... 
T Consensus       566 --ff~~m-~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~-  640 (889)
T KOG4658|consen  566 --FFRSL-PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE-  640 (889)
T ss_pred             --HHhhC-cceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhh-
Confidence              13445 78888888888888888888888888888888886 566666 4777888888888887766666665555 


Q ss_pred             CCCCccEEEEecCCCCCC---CCCCCCCCCccEEeccccccccccChhhhccCCCCcc----EEEecCCCCCcccccccC
Q 003013          458 SNSSLESLKIRSCNSLVS---FPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLE----SLEIRSCDSLTYIARIQL  530 (857)
Q Consensus       458 ~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~  530 (857)
                       +++|++|.+........   +.++..+.+|+.+.+.....  .+-..+..  ++.|.    .+.+.+|...+.......
T Consensus       641 -L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~--~~~L~~~~~~l~~~~~~~~~~~~~~~~  715 (889)
T KOG4658|consen  641 -LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLG--MTRLRSLLQSLSIEGCSKRTLISSLGS  715 (889)
T ss_pred             -cccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhh--hHHHHHHhHhhhhcccccceeeccccc
Confidence             88888888865321111   12334555555555544322  00000000  12222    333333444444455556


Q ss_pred             CCcccEEeeccCCCch
Q 003013          531 PPSLKRLIVSDCCNLR  546 (857)
Q Consensus       531 ~~~L~~L~l~~~~~l~  546 (857)
                      ..+++.|.+.+|...+
T Consensus       716 l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  716 LGNLEELSILDCGISE  731 (889)
T ss_pred             ccCcceEEEEcCCCch
Confidence            6777777777776654

>PLN03210 Resistant to P Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PTZ00202 tuzin; Provisional Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PRK08118 topology modulation protein; Reviewed Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK06696 uridine kinase; Validated Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00301 uridine kinase; Provisional Back     alignment and domain information
>PRK07667 uridine kinase; Provisional Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK15455 PrkA family serine protein kinase; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PRK05480 uridine/cytidine kinase; Provisional Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>TIGR00235 udk uridine kinase Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK06547 hypothetical protein; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK05541 adenylylsulfate kinase; Provisional Back     alignment and domain information
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd01878 HflX HflX subfamily Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>PRK04040 adenylate kinase; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK06762 hypothetical protein; Provisional Back     alignment and domain information
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>TIGR00554 panK_bact pantothenate kinase, bacterial type Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily Back     alignment and domain information
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK03839 putative kinase; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] Back     alignment and domain information
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A Back     alignment and domain information
>PRK00625 shikimate kinase; Provisional Back     alignment and domain information
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] Back     alignment and domain information
>TIGR00150 HI0065_YjeE ATPase, YjeE family Back     alignment and domain information
>PRK00889 adenylylsulfate kinase; Provisional Back     alignment and domain information
>PRK05439 pantothenate kinase; Provisional Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis Back     alignment and domain information
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional Back     alignment and domain information
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain Back     alignment and domain information
>PRK03846 adenylylsulfate kinase; Provisional Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional Back     alignment and domain information
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only] Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB Back     alignment and domain information
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>TIGR01287 nifH nitrogenase iron protein Back     alignment and domain information
>PRK13768 GTPase; Provisional Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases Back     alignment and domain information
>PRK13949 shikimate kinase; Provisional Back     alignment and domain information
>PRK13236 nitrogenase reductase; Reviewed Back     alignment and domain information
>TIGR00073 hypB hydrogenase accessory protein HypB Back     alignment and domain information
>PRK13947 shikimate kinase; Provisional Back     alignment and domain information
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components Back     alignment and domain information
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain Back     alignment and domain information
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse Back     alignment and domain information
>PRK00300 gmk guanylate kinase; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate Back     alignment and domain information
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PLN02318 phosphoribulokinase/uridine kinase Back     alignment and domain information
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family Back     alignment and domain information
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02348 phosphoribulokinase Back     alignment and domain information
>PRK10078 ribose 1,5-bisphosphokinase; Provisional Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase Back     alignment and domain information
>PRK05057 aroK shikimate kinase I; Reviewed Back     alignment and domain information
>PRK12339 2-phosphoglycerate kinase; Provisional Back     alignment and domain information
>cd03114 ArgK-like The function of this protein family is unkown Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein Back     alignment and domain information
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism] Back     alignment and domain information
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd04139 RalA_RalB RalA/RalB subfamily Back     alignment and domain information
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional Back     alignment and domain information
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13230 nitrogenase reductase-like protein; Reviewed Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13975 thymidylate kinase; Provisional Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>cd01858 NGP_1 NGP-1 Back     alignment and domain information
>PRK14738 gmk guanylate kinase; Provisional Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09435 membrane ATPase/protein kinase; Provisional Back     alignment and domain information
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00750 lao LAO/AO transport system ATPase Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2 Back     alignment and domain information
>PRK13946 shikimate kinase; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways Back     alignment and domain information
>PRK13232 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>cd01862 Rab7 Rab7 subfamily Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>PRK14530 adenylate kinase; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH) Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional Back     alignment and domain information
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) Back     alignment and domain information
>PRK13948 shikimate kinase; Provisional Back     alignment and domain information
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes Back     alignment and domain information
>PRK09825 idnK D-gluconate kinase; Provisional Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor Back     alignment and domain information
>PLN02796 D-glycerate 3-kinase Back     alignment and domain information
>cd04155 Arl3 Arl3 subfamily Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 Back     alignment and domain information
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK03731 aroL shikimate kinase II; Reviewed Back     alignment and domain information
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR02173 cyt_kin_arch cytidylate kinase, putative Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity Back     alignment and domain information
>PRK13233 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional Back     alignment and domain information
>PRK13235 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>PRK04182 cytidylate kinase; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein Back     alignment and domain information
>cd00876 Ras Ras family Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] Back     alignment and domain information
>PLN02924 thymidylate kinase Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>PRK08356 hypothetical protein; Provisional Back     alignment and domain information
>cd04113 Rab4 Rab4 subfamily Back     alignment and domain information
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] Back     alignment and domain information
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>smart00173 RAS Ras subfamily of RAS small GTPases Back     alignment and domain information
>cd04119 RJL RJL (RabJ-Like) subfamily Back     alignment and domain information
>PLN02200 adenylate kinase family protein Back     alignment and domain information
>smart00175 RAB Rab subfamily of small GTPases Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>PLN03046 D-glycerate 3-kinase; Provisional Back     alignment and domain information
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes Back     alignment and domain information
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit Back     alignment and domain information
>PRK14527 adenylate kinase; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>TIGR00231 small_GTP small GTP-binding protein domain Back     alignment and domain information
>PRK13231 nitrogenase reductase-like protein; Reviewed Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK06761 hypothetical protein; Provisional Back     alignment and domain information
>cd00154 Rab Rab family Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK07429 phosphoribulokinase; Provisional Back     alignment and domain information
>cd00879 Sar1 Sar1 subfamily Back     alignment and domain information
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional Back     alignment and domain information
>TIGR02528 EutP ethanolamine utilization protein, EutP Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd04163 Era Era subfamily Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>cd04159 Arl10_like Arl10-like subfamily Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases Back     alignment and domain information
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PLN02165 adenylate isopentenyltransferase Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>cd01876 YihA_EngB The YihA (EngB) subfamily Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd01864 Rab19 Rab19 subfamily Back     alignment and domain information
>cd01860 Rab5_related Rab5-related subfamily Back     alignment and domain information
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>cd04124 RabL2 RabL2 subfamily Back     alignment and domain information
>cd01898 Obg Obg subfamily Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR00455 apsK adenylylsulfate kinase (apsK) Back     alignment and domain information
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed Back     alignment and domain information
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily Back     alignment and domain information
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily Back     alignment and domain information
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity Back     alignment and domain information
>TIGR01618 phage_P_loop phage nucleotide-binding protein Back     alignment and domain information
>PRK06851 hypothetical protein; Provisional Back     alignment and domain information
>PRK15453 phosphoribulokinase; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>cd01892 Miro2 Miro2 subfamily Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>PRK14737 gmk guanylate kinase; Provisional Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd02032 Bchl_like This family of proteins contains bchL and chlL Back     alignment and domain information
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup Back     alignment and domain information
>PRK00454 engB GTP-binding protein YsxC; Reviewed Back     alignment and domain information
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR00101 ureG urease accessory protein UreG Back     alignment and domain information
>PRK01184 hypothetical protein; Provisional Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>cd04123 Rab21 Rab21 subfamily Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>cd04177 RSR1 RSR1 subgroup Back     alignment and domain information
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02673 FtsE cell division ATP-binding protein FtsE Back     alignment and domain information
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily Back     alignment and domain information
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively Back     alignment and domain information
>PTZ00088 adenylate kinase 1; Provisional Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor Back     alignment and domain information
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB Back     alignment and domain information
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>cd04140 ARHI_like ARHI subfamily Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) Back     alignment and domain information
>cd04101 RabL4 RabL4 (Rab-like4) subfamily Back     alignment and domain information
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily Back     alignment and domain information
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily Back     alignment and domain information
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] Back     alignment and domain information
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase Back     alignment and domain information
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>TIGR00041 DTMP_kinase thymidylate kinase Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd04160 Arfrp1 Arfrp1 subfamily Back     alignment and domain information
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import Back     alignment and domain information
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs) Back     alignment and domain information
>PRK13234 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>cd04103 Centaurin_gamma Centaurin gamma Back     alignment and domain information
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane Back     alignment and domain information
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] Back     alignment and domain information
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system Back     alignment and domain information
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal Back     alignment and domain information
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query857
4fcg_A328 Structure Of The Leucine-Rich Repeat Domain Of The 8e-04
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 Back     alignment and structure 
Iteration: 1

 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 355 IISLNRLQ---IKGCPRLLSL-----VTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQA 406
           I SLNRL+   I+ CP L  L      T+   +HQ       L+ L L +  G+  LP +
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGL---VNLQSLRLEWT-GIRSLPAS 201
Query: 407 LLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLK 466
           +  L +L  +KI         P +    +L  + ++ C AL++ P   ++   + L+ L 
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLI 259
Query: 467 IRSCNSLVSFP-EIALPSQLRTVRIQECNALKSLP 500
           ++ C++L++ P +I   +QL  + ++ C  L  LP
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query857
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 1e-39
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 3e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 4e-24
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 6e-18
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 5e-17
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 2e-13
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 8e-08
4fcg_A 328 Uncharacterized protein; structural genomics, PSI- 2e-07
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 2e-18
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 2e-16
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 6e-16
1jl5_A 454 Outer protein YOPM; leucine-rich repeat, molecular 1e-07
1jl5_A 454 Outer protein YOPM; leucine-rich repeat, molecular 2e-06
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 5e-15
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 3e-11
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 8e-11
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 2e-14
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 1e-07
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-13
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-10
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 4e-10
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 2e-09
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 1e-13
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 4e-12
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 5e-11
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 1e-08
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 5e-12
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 2e-11
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 4e-10
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 5e-12
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 9e-12
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 2e-10
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 3e-10
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 2e-09
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 7e-12
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 5e-10
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 5e-09
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 8e-12
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 3e-10
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 5e-11
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 1e-08
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 4e-08
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 2e-10
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 1e-09
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 3e-05
1o6v_A466 Internalin A; bacterial infection, extracellular r 4e-10
1o6v_A466 Internalin A; bacterial infection, extracellular r 2e-08
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 9e-10
2z63_A 570 TOLL-like receptor 4, variable lymphocyte recepto; 1e-09
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 2e-08
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 2e-08
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 1e-09
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 4e-09
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 3e-08
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 2e-05
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 2e-08
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 4e-04
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 3e-08
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 7e-06
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 9e-06
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 2e-04
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 3e-08
4ay9_X 350 Follicle-stimulating hormone receptor; hormone-rec 2e-05
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 8e-04
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 8e-08
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 9e-08
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 9e-07
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 4e-06
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 1e-05
4fmz_A347 Internalin; leucine rich repeat, structural genomi 2e-05
4fmz_A 347 Internalin; leucine rich repeat, structural genomi 7e-04
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 2e-05
3qfl_A115 MLA10; coiled-coil, (CC) domain, NLRS, nucleotide- 2e-05
3zyi_A 452 Leucine-rich repeat-containing protein 4; cell adh 3e-05
3zyj_A 440 Leucine-rich repeat-containing protein 4C; cell ad 4e-05
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 5e-05
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 5e-05
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 2e-04
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 7e-05
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 7e-05
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 8e-05
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 2e-04
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 1e-04
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 4e-04
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 6e-04
4ezg_A197 Putative uncharacterized protein; internalin-A, le 7e-04
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 7e-04
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
 Score =  154 bits (391), Expect = 1e-39
 Identities = 35/244 (14%), Positives = 76/244 (31%), Gaps = 22/244 (9%)

Query: 14  DRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLLQEPAAADQPSSSANTSKFR 73
           D + R   ++      +++      ++D + ++        +        +      +  
Sbjct: 2   DAKARNCLLQHREALEKDI--KTSYIMDHMISDGFLTISEEE-----KVRNEPTQQQRAA 54

Query: 74  KLIPTCCTNFSPRSIQF-ESKMVSKIKGITDRLQDIITTQKGLLDSQIVISVGKSRDVGQ 132
            LI       +   + F  + +    K +   L D I           V   G +  V  
Sbjct: 55  MLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSV--SGITSYVRT 112

Query: 133 RLPTPSLVNEAKVY-GREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVY 191
            L    +     V+  R+K    I + L             ++I+GMAG GK+ LA    
Sbjct: 113 VLCEGGVPQRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAV 168

Query: 192 NDDRVQRHY--EIKAWTCVSEDFDVFGVSKF--ILNSIAKDQS---NNDDDLNSLQVKLK 244
            D  +          W  V +      + K   +   + +D+S       ++   + +L+
Sbjct: 169 RDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLR 228

Query: 245 ERLE 248
             + 
Sbjct: 229 ILML 232
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 Back     alignment and structure
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Length = 115 Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query857
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 100.0
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 99.97
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 99.96
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 99.96
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 99.95
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.95
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 99.95
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 99.95
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 99.95
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.94
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.94
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.94
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.94
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.94
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.94
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.94
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.93
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.93
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.92
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.92
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.92
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.91
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.91
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.9
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.89
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.89
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.89
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.89
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.89
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.88
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.87
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.87
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.86
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.86
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.84
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.84
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.84
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.83
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.83
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.83
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.79
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.78
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.77
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.77
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.76
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.76
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.75
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 99.75
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.73
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.72
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.72
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 99.67
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 99.66
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 99.66
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 99.66
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 99.65
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.65
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.65
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 99.64
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.64
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 99.63
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.63
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.62
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.59
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.59
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.58
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.57
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 99.56
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.54
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.53
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.53
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.52
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.51
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.5
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.5
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.49
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.49
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.48
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.48
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.48
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.47
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 99.45
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.43
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.43
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.41
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.4
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.38
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.37
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.36
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.36
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.34
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.32
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.27
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.23
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.23
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.22
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.22
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.19
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 99.18
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.18
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.17
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.17
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.16
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.15
1m9s_A605 Internalin B; cell invasion, GW domains, SH3 domai 99.13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 99.12
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.11
3qfl_A115 MLA10; coiled-coil, (CC) domain, NLRS, nucleotide- 99.08
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.07
2xot_A 361 Amphoterin-induced protein 1; cell adhesion, neuro 99.04
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.03
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.02
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 98.99
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.97
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 98.96
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 98.96
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 98.96
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 98.94
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.94
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.92
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 98.91
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 98.88
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 98.82
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 98.81
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 98.8
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 98.78
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.76
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.74
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.72
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.66
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.65
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 98.6
1w8a_A192 SLIT protein; signaling protein, secreted protein, 98.58
1w8a_A192 SLIT protein; signaling protein, secreted protein, 98.57
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.56
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 98.54
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 98.54
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 98.48
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 98.48
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 98.46
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 98.43
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.43
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 98.37
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.32
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 98.28
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 98.19
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.13
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 98.11
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 98.1
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 97.98
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 97.94
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 97.87
4gt6_A394 Cell surface protein; leucine rich repeats, putati 97.87
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 97.86
2ifg_A 347 High affinity nerve growth factor receptor; TRK, T 97.84
2ifg_A 347 High affinity nerve growth factor receptor; TRK, T 97.8
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 97.67
2v1u_A387 Cell division control protein 6 homolog; DNA repli 97.66
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 97.6
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 97.6
4gt6_A394 Cell surface protein; leucine rich repeats, putati 97.6
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 97.57
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 97.56
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 97.41
2fna_A357 Conserved hypothetical protein; structural genomic 97.25
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 97.2
2chg_A226 Replication factor C small subunit; DNA-binding pr 97.18
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 97.13
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 97.13
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 97.11
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 97.02
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 96.95
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 96.85
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 96.6
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 96.39
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 96.33
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 96.26
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 96.11
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 96.01
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 95.91
3co5_A143 Putative two-component system transcriptional RES 95.88
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 95.87
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 95.82
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 95.81
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 95.7
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 95.7
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 95.67
3pxg_A468 Negative regulator of genetic competence CLPC/MEC; 95.64
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 95.64
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 95.62
3bos_A242 Putative DNA replication factor; P-loop containing 95.61
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 95.53
2chq_A319 Replication factor C small subunit; DNA-binding pr 95.52
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 95.51
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 95.48
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 95.47
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 95.45
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 95.31
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 95.31
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 95.26
3pvs_A447 Replication-associated recombination protein A; ma 95.25
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 95.19
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 95.17
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 95.11
2ga8_A359 Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn 95.05
2r62_A268 Cell division protease FTSH homolog; ATPase domain 95.02
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 94.96
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 94.9
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 94.83
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 94.81
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 94.78
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 94.64
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 94.6
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 94.56
1ojl_A304 Transcriptional regulatory protein ZRAR; response 94.53
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 94.52
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 94.49
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 94.49
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 94.46
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 94.44
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 94.42
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 94.4
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 94.39
3fwy_A314 Light-independent protochlorophyllide reductase I 94.38
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 94.38
1odf_A290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 94.37
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 94.33
2kjq_A149 DNAA-related protein; solution structure, NESG, st 94.33
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 94.32
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 94.31
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 94.28
3vaa_A199 Shikimate kinase, SK; structural genomics, center 94.22
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 94.21
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 94.14
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 94.12
2c9o_A456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 94.11
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 94.1
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 94.08
3tqc_A321 Pantothenate kinase; biosynthesis of cofactors, pr 94.02
2r44_A331 Uncharacterized protein; putative ATPase, structur 94.02
3nbx_X500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 93.98
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 93.94
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 93.93
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 93.86
1kag_A173 SKI, shikimate kinase I; transferase, structural g 93.83
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 93.68
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 93.63
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 93.59
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 93.58
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 93.58
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 93.58
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 93.56
2hf9_A226 Probable hydrogenase nickel incorporation protein 93.48
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 93.45
1uj2_A252 Uridine-cytidine kinase 2; alpha/beta mononucleoti 93.45
1xjc_A169 MOBB protein homolog; structural genomics, midwest 93.44
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 93.43
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 93.43
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 93.42
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 93.42
2wsm_A221 Hydrogenase expression/formation protein (HYPB); m 93.39
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 93.38
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 93.37
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 93.35
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 93.33
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 93.3
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 93.23
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 93.2
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 93.2
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 93.16
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 93.16
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 93.16
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 93.12
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 93.12
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 93.08
3aez_A312 Pantothenate kinase; transferase, homodimer, COA b 93.06
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 93.03
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 93.03
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 93.02
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 93.0
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 92.96
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 92.95
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 92.91
3p32_A355 Probable GTPase RV1496/MT1543; structural genomics 92.87
2cvh_A220 DNA repair and recombination protein RADB; filamen 92.87
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 92.86
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 92.84
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 92.83
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 92.82
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 92.79
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 92.74
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 92.71
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 92.67
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 92.65
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 92.61
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 92.6
2qgz_A308 Helicase loader, putative primosome component; str 92.58
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 92.56
1via_A175 Shikimate kinase; structural genomics, transferase 92.53
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 92.51
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 92.5
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 92.5
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 92.46
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 92.46
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 92.45
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 92.35
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 92.34
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 92.33
2f6r_A281 COA synthase, bifunctional coenzyme A synthase; 18 92.31
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 92.26
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 92.21
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 92.21
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 92.2
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 92.16
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 92.15
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 92.15
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 92.14
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 92.14
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 92.11
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 92.1
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 92.03
1sq5_A308 Pantothenate kinase; P-loop, transferase; HET: PAU 92.01
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 92.0
2dhr_A499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 91.97
2f1r_A171 Molybdopterin-guanine dinucleotide biosynthesis pr 91.94
2ged_A193 SR-beta, signal recognition particle receptor beta 91.94
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 91.94
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 91.9
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 91.9
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 91.89
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 91.87
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 91.83
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 91.78
2vli_A183 Antibiotic resistance protein; transferase, tunica 91.74
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 91.7
3end_A307 Light-independent protochlorophyllide reductase ir 91.69
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 91.56
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 91.55
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 91.46
1vma_A306 Cell division protein FTSY; TM0570, structural gen 91.44
1vht_A218 Dephospho-COA kinase; structural genomics, transfe 91.32
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 91.3
1gtv_A214 TMK, thymidylate kinase; transferase, transferase 91.26
2wji_A165 Ferrous iron transport protein B homolog; membrane 91.24
1yrb_A262 ATP(GTP)binding protein; GTPase, P-loop, rossman f 91.21
1oix_A191 RAS-related protein RAB-11A; small G protein, intr 91.2
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 91.19
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 91.16
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 91.15
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 91.14
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 91.14
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 91.11
1tue_A212 Replication protein E1; helicase, replication, E1E 91.09
2vp4_A230 Deoxynucleoside kinase; ATP-binding, DNA synthesis 91.06
2afh_E289 Nitrogenase iron protein 1; nitrogen fixation, iro 91.04
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 91.04
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 90.97
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 90.97
2dyk_A161 GTP-binding protein; GTPase, ribosome-binding prot 90.95
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 90.93
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 90.91
4a74_A231 DNA repair and recombination protein RADA; hydrola 90.91
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 90.91
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 90.79
2og2_A359 Putative signal recognition particle receptor; nuc 90.77
3tlx_A243 Adenylate kinase 2; structural genomics, structura 90.73
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 90.7
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 90.66
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 90.62
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 90.62
1ji0_A240 ABC transporter; ATP binding protein, structural g 90.6
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 90.59
1sgw_A214 Putative ABC transporter; structural genomics, P p 90.58
2xxa_A433 Signal recognition particle protein; protein trans 90.56
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 90.56
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 90.52
2zej_A184 Dardarin, leucine-rich repeat kinase 2; parkinson' 90.47
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 90.47
1cp2_A269 CP2, nitrogenase iron protein; oxidoreductase; 1.9 90.45
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 90.42
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 90.41
1g6h_A257 High-affinity branched-chain amino acid transport 90.37
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 90.28
2f9l_A199 RAB11B, member RAS oncogene family; RAB11B GTPase, 90.28
1b0u_A262 Histidine permease; ABC transporter, transport pro 90.28
1svi_A195 GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro 90.24
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 90.21
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 90.21
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 90.16
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 90.16
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 90.13
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 90.09
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 90.09
3r20_A233 Cytidylate kinase; structural genomics, seattle st 90.08
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 90.07
2wjg_A188 FEOB, ferrous iron transport protein B homolog; me 90.05
2ce2_X166 GTPase HRAS; signaling protein, guanine nucleotide 90.0
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 89.99
2z43_A324 DNA repair and recombination protein RADA; archaea 89.95
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 89.95
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 89.94
3con_A190 GTPase NRAS; structural genomics consortium, SGC, 89.93
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 89.82
2zu0_C267 Probable ATP-dependent transporter SUFC; iron-sulf 89.78
2nq2_C253 Hypothetical ABC transporter ATP-binding protein H 89.78
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 89.75
2ghi_A260 Transport protein; multidrug resistance protein, M 89.72
2qtf_A364 Protein HFLX, GTP-binding protein; beta-alpha-barr 89.7
2p67_A341 LAO/AO transport system kinase; ARGK, structural G 89.67
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 89.63
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 89.61
2yz2_A266 Putative ABC transporter ATP-binding protein TM_0; 89.58
2ihy_A279 ABC transporter, ATP-binding protein; ATPase, ABC 89.58
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 89.54
2xb4_A223 Adenylate kinase; ATP-binding, nucleotide-binding, 89.47
1a7j_A290 Phosphoribulokinase; transferase, calvin cycle; 2. 89.46
2lkc_A178 Translation initiation factor IF-2; NMR {Geobacill 89.44
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 89.42
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 89.35
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 89.35
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 89.3
3q85_A169 GTP-binding protein REM 2; G-domain, CAV2 beta, si 89.28
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 89.27
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 89.22
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 89.19
1fzq_A181 ADP-ribosylation factor-like protein 3; protein-GD 89.18
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 89.16
3sop_A270 Neuronal-specific septin-3; hydrolase; HET: GDP; 2 89.15
1nrj_B218 SR-beta, signal recognition particle receptor beta 89.09
1mky_A439 Probable GTP-binding protein ENGA; GTPase, DER, KH 89.06
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 89.03
1c1y_A167 RAS-related protein RAP-1A; GTP-binding proteins, 89.0
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 88.96
1u8z_A168 RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH 88.96
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 88.95
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 88.95
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 88.95
3q72_A166 GTP-binding protein RAD; G-domain, CAV2 beta, sign 88.9
2gj8_A172 MNME, tRNA modification GTPase TRME; G-domain dime 88.88
3t1o_A198 Gliding protein MGLA; G domain containing protein, 88.87
2eyu_A261 Twitching motility protein PILT; pilus retraction 88.86
2www_A349 Methylmalonic aciduria type A protein, mitochondri 88.78
2erx_A172 GTP-binding protein DI-RAS2; GTP hydrolysis, trans 88.74
1tq4_A413 IIGP1, interferon-inducible GTPase; interferon gam 88.74
2nzj_A175 GTP-binding protein REM 1; GDP/GTP binding, GTP hy 88.72
3pqc_A195 Probable GTP-binding protein ENGB; rossmann fold, 88.72
1z08_A170 RAS-related protein RAB-21; RAB GTPase, vesicular 88.67
2pjz_A263 Hypothetical protein ST1066; ATP binding protein, 88.64
1m7b_A184 RND3/RHOE small GTP-binding protein; small GTPase, 88.62
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 88.59
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 88.57
1f6b_A198 SAR1; gtpases, N-terminal helix, Mg-containing com 88.52
2fn4_A181 P23, RAS-related protein R-RAS; GDP/GTP binding, G 88.48
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 88.45
3llu_A196 RAS-related GTP-binding protein C; structural geno 88.43
2qu8_A228 Putative nucleolar GTP-binding protein 1; GTPase, 88.41
3ihw_A184 Centg3; RAS, centaurin, GTPase, structural genomic 88.38
1z0j_A170 RAB-22, RAS-related protein RAB-22A; RAB GTPase, R 88.37
4dzz_A206 Plasmid partitioning protein PARF; deviant walker 88.36
1u94_A356 RECA protein, recombinase A; homologous recombinat 88.35
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 88.31
3cbq_A195 GTP-binding protein REM 2; FLJ38964A, structural g 88.29
3c5c_A187 RAS-like protein 12; GDP, GTPase, structural genom 88.27
2ocp_A241 DGK, deoxyguanosine kinase; protein-nucleotide com 88.23
2bbs_A290 Cystic fibrosis transmembrane conductance regulato 88.23
3fkq_A373 NTRC-like two-domain protein; RER070207001320, str 88.21
1ek0_A170 Protein (GTP-binding protein YPT51); vesicular tra 88.2
3tw8_B181 RAS-related protein RAB-35; longin domain, RAB GTP 88.18
2yv5_A302 YJEQ protein; hydrolase, GTPase, permutation, stru 88.12
3kkq_A183 RAS-related protein M-RAS; GTP-binding, GTPase, si 88.08
3ld9_A223 DTMP kinase, thymidylate kinase; ssgcid, NIH, niai 88.07
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 88.04
3ea0_A245 ATPase, para family; alpha-beta-alpha sandwich, st 88.02
2qnr_A301 Septin-2, protein NEDD5; structural genomics conso 87.99
1ky3_A182 GTP-binding protein YPT7P; vesicular traffic, GTP 87.96
3nh6_A306 ATP-binding cassette SUB-family B member 6, mitoc; 87.95
2cxx_A190 Probable GTP-binding protein ENGB; structural geno 87.94
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 87.91
1m2o_B190 GTP-binding protein SAR1, GTP binding protein; zin 87.85
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 87.83
4bas_A199 ADP-ribosylation factor, putative (small GTPase, p 87.81
2hxs_A178 RAB-26, RAS-related protein RAB-28; GTPase, signal 87.79
1nij_A318 Hypothetical protein YJIA; structural genomics, P- 87.79
1r8s_A164 ADP-ribosylation factor 1; protein transport/excha 87.76
1z0f_A179 RAB14, member RAS oncogene family; RAB GTPase, ves 87.69
1pui_A210 ENGB, probable GTP-binding protein ENGB; structura 87.67
1ltq_A301 Polynucleotide kinase; phosphatase, alpha/beta, P- 87.61
2qm8_A337 GTPase/ATPase; G protein, G3E, metallochaperone, c 87.55
1r2q_A170 RAS-related protein RAB-5A; GTPase, GNP, atomic re 87.55
1wms_A177 RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p 87.54
2bov_A206 RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, 87.52
1u0l_A301 Probable GTPase ENGC; permutation, OB-fold, zinc-f 87.51
1zj6_A187 ADP-ribosylation factor-like protein 5; ARL, GTP-b 87.51
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 87.5
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 87.44
4dsu_A189 GTPase KRAS, isoform 2B; small G-protein, signalin 87.35
2obl_A347 ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O 87.35
2bme_A186 RAB4A, RAS-related protein RAB4A; GTP-binding prot 87.33
1u0j_A267 DNA replication protein; AAA+ protein, P-loop atpa 87.33
2e87_A357 Hypothetical protein PH1320; GTP-binding, GTPase, 87.31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
Probab=100.00  E-value=7.4e-34  Score=335.33  Aligned_cols=555  Identities=16%  Similarity=0.075  Sum_probs=329.9

Q ss_pred             ccccceeeccccchhhcCCch--h---cccccchhccccc---chhhhc-cCCCCccEEeecCccccccc--C---CCCC
Q 003013          265 FPKLRRLSLHRCDKLQGTLPK--R---LLLLDTLYITSCD---QLLMTI-QCLPALSKLLIHGCKRVVFS--G---PMDL  330 (857)
Q Consensus       265 ~~~L~~l~~~~c~~l~~~lp~--~---l~~L~~l~~~~c~---~l~~~~-~~l~~l~~l~l~~~~~~~~~--~---~~~l  330 (857)
                      +++|+.|+++.|. +.+.+|.  .   +..|+.+.+..|.   ..|..+ ..+++|+.|+++++......  .   +..+
T Consensus        99 l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l  177 (768)
T 3rgz_A           99 SASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC  177 (768)
T ss_dssp             CTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred             CCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence            5667777777765 3333454  3   3455566666653   233333 66778888888877643322  1   5677


Q ss_pred             CCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCC
Q 003013          331 SSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTL  410 (857)
Q Consensus       331 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l  410 (857)
                      ++|+.|++.++.-....+.   ..+++|++|+++++.....++       .++.+ ++|++|++++|.....+|..+..+
T Consensus       178 ~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~-------~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l  246 (768)
T 3rgz_A          178 GELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIP-------FLGDC-SALQHLDISGNKLSGDFSRAISTC  246 (768)
T ss_dssp             TTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCC-------BCTTC-CSCCEEECCSSCCCSCHHHHTTTC
T ss_pred             CCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCc-------ccccC-CCCCEEECcCCcCCCcccHHHhcC
Confidence            7888888877543222221   567788888888764322121       14555 778888888876655677778888


Q ss_pred             CCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEe
Q 003013          411 CSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFP-EIALPSQLRTVR  489 (857)
Q Consensus       411 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~  489 (857)
                      ++|++|++++|.....+|.. .+++|++|++++|.....+|..+.. .+++|++|++++|.....+| .+..+++|++|+
T Consensus       247 ~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  324 (768)
T 3rgz_A          247 TELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA  324 (768)
T ss_dssp             SSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence            88888888887554445544 6777777777777633356655442 13777777777764433444 346667777777


Q ss_pred             ccccccccccChhhhccCCCCccEEEecCCCCCccccc-c-cCCCcccEEeeccCCC---------------chhhcccc
Q 003013          490 IQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIAR-I-QLPPSLKRLIVSDCCN---------------LRTLMAEQ  552 (857)
Q Consensus       490 l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~-~-~~~~~L~~L~l~~~~~---------------l~~~~~~~  552 (857)
                      ++++.....+|..... .+++|+.|++++|.-...++. + ...++|+.|+++++.-               |+.+....
T Consensus       325 L~~n~l~~~ip~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~  403 (768)
T 3rgz_A          325 LSSNNFSGELPMDTLL-KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN  403 (768)
T ss_dssp             CCSSEEEEECCHHHHT-TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred             CCCCcccCcCCHHHHh-cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence            7775544466655222 256777777776532211111 1 1122555555554321               11111100


Q ss_pred             cccccCCCCCCccccCCCCCCCCCccEEEEeCCCCcccccc-CCCchhhHHHHHhhcCchhhhhhcc-CCCCcceeeccC
Q 003013          553 DICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSR-NGNLPRALKYLVSLCSKLESLAERL-DNTSLEGIFIYE  630 (857)
Q Consensus       553 ~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~L~~l~l~~  630 (857)
                      +..        ...+|.....+++|+.|+++++.-...++. .+.++.+..+.+..+.-...++..+ ...+|+.|++.+
T Consensus       404 n~l--------~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  475 (768)
T 3rgz_A          404 NGF--------TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF  475 (768)
T ss_dssp             SEE--------EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             Ccc--------ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence            000        001111111224555555555421111100 0011111111111111111122222 235788888888


Q ss_pred             cCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccC
Q 003013          631 LENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFP  710 (857)
Q Consensus       631 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~  710 (857)
                      +.-...+|..+..+++|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|++|++++|+....+|
T Consensus       476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            65555778888888889999998887666777777788889999999887666888888888999999888875332333


Q ss_pred             CC-----------------------------------------------------------------------CCCCCCC
Q 003013          711 ED-----------------------------------------------------------------------GFPTNLK  719 (857)
Q Consensus       711 ~~-----------------------------------------------------------------------~~~~~L~  719 (857)
                      ..                                                                       ..+++|+
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~  635 (768)
T 3rgz_A          556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM  635 (768)
T ss_dssp             GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred             hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence            21                                                                       1236788


Q ss_pred             eEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCcccCCCCCCccccCceeccC
Q 003013          720 SLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLECLSSIGENLTSLKTLRLSY  796 (857)
Q Consensus       720 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~  796 (857)
                      .|++++|.....++. .+..+++|+.|++++ +.-...+|.   .+++|+.|+++++.--..+|.....+++|+.|++++
T Consensus       636 ~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~  713 (768)
T 3rgz_A          636 FLDMSYNMLSGYIPK-EIGSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN  713 (768)
T ss_dssp             EEECCSSCCBSCCCG-GGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred             EEECcCCcccccCCH-HHhccccCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence            999999987666654 688899999999998 333346665   578999999999544447887778999999999999


Q ss_pred             CCCCCCCCCCCccccccceeecCCcchH----HhhcCCCCCCCCcccCcCeE
Q 003013          797 CRKLTYFSKEGLPKSLLRLYINHCPLIE----ERCRKDEGKYWPMISHIPCV  844 (857)
Q Consensus       797 c~~l~~ip~~~l~~~L~~L~i~~c~~l~----~~~~~~~g~~w~~i~~i~~~  844 (857)
                      |+.-..+|..+...++....+.|||.|.    ..|....+++|++|+|++.+
T Consensus       714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             SEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred             CcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence            9777788987666777777777876442    37999999999999999875
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Back     alignment and structure
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Back     alignment and structure
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Back     alignment and structure
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Back     alignment and structure
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* Back     alignment and structure
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Back     alignment and structure
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Back     alignment and structure
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Back     alignment and structure
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Back     alignment and structure
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Back     alignment and structure
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} Back     alignment and structure
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Back     alignment and structure
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Back     alignment and structure
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Back     alignment and structure
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Back     alignment and structure
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Back     alignment and structure
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Back     alignment and structure
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Back     alignment and structure
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Back     alignment and structure
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Back     alignment and structure
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Back     alignment and structure
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Back     alignment and structure
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Back     alignment and structure
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Back     alignment and structure
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Back     alignment and structure
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} Back     alignment and structure
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Back     alignment and structure
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Back     alignment and structure
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Back     alignment and structure
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} Back     alignment and structure
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Back     alignment and structure
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Back     alignment and structure
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Back     alignment and structure
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} Back     alignment and structure
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Back     alignment and structure
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 Back     alignment and structure
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Back     alignment and structure
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Back     alignment and structure
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Back     alignment and structure
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Back     alignment and structure
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Back     alignment and structure
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Back     alignment and structure
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Back     alignment and structure
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Back     alignment and structure
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Back     alignment and structure
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Back     alignment and structure
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Back     alignment and structure
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Back     alignment and structure
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 857
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 1e-19
d1xkua_305 c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 6e-06
d2fnaa2283 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo 0.002
d1jl5a_353 c.10.2.6 (A:) Leucine rich effector protein YopM { 0.002
d1jl5a_353 c.10.2.6 (A:) Leucine rich effector protein YopM { 0.004
d1w5sa2287 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t 0.004
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 87.6 bits (216), Expect = 1e-19
 Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 5/158 (3%)

Query: 126 KSRDVGQRLPTPSLVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTT 185
             + + ++L   ++  +   Y RE   + +I+ L       D     + ++G AG GK+ 
Sbjct: 3   SRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSV 59

Query: 186 LAQLVYNDDR--VQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSNNDDDLNSLQVKL 243
           +A    +     +  +Y+   W   S          F    +     ++  +  S++   
Sbjct: 60  IASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVT 119

Query: 244 KERLEWEEWIPCGAGQEVDEVFPKLRRLSLHRCDKLQG 281
              L+               VF  + +    R  +   
Sbjct: 120 SVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELR 157
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query857
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.75
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.7
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.67
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 99.64
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.64
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.59
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.57
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.55
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.49
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.48
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.39
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.36
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.31
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.27
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.24
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.24
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.21
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 99.21
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 99.19
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.18
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.17
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.17
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.14
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.84
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.74
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.73
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.72
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 98.69
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 98.58
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.58
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.32
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.26
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.15
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 98.06
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 98.02
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 97.7
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 97.59
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 97.34
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 97.07
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 96.96
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 96.93
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 96.81
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 96.8
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 96.76
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 96.72
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 96.71
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 96.7
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 96.61
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 96.55
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 96.25
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 96.1
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 96.1
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 96.08
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 96.05
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 95.88
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 95.75
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 95.73
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 95.64
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 95.59
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 95.57
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 95.49
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 95.47
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 95.35
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 95.34
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 95.29
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 95.29
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 95.29
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 95.22
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 95.12
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 95.11
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 95.04
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 94.99
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 94.96
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 94.96
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 94.94
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 94.73
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 94.71
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 94.6
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 94.56
d1cp2a_269 Nitrogenase iron protein {Clostridium pasteurianum 94.48
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 94.44
d2qy9a2211 GTPase domain of the signal recognition particle r 94.39
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 94.33
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 94.32
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 94.29
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 94.28
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 94.22
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 94.11
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 94.05
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 93.89
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 93.89
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 93.89
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 93.75
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 93.74
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 93.53
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 93.53
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 93.45
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 93.43
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 93.42
d2afhe1289 Nitrogenase iron protein {Azotobacter vinelandii [ 93.24
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 93.02
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 92.87
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 92.87
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 92.55
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 92.52
d1ls1a2207 GTPase domain of the signal sequence recognition p 92.38
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 92.34
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 92.32
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 92.21
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 92.19
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 92.1
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 92.0
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 91.93
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 91.83
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 91.73
d1hyqa_232 Cell division regulator MinD {Archaeon Archaeoglob 91.72
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 91.55
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 91.54
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 91.53
d1j8yf2211 GTPase domain of the signal sequence recognition p 91.47
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 91.46
d1g2912240 Maltose transport protein MalK, N-terminal domain 91.42
d1svma_362 Papillomavirus large T antigen helicase domain {Si 91.39
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 91.31
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 91.31
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 91.26
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 91.26
d1okkd2207 GTPase domain of the signal recognition particle r 91.22
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 91.21
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 91.2
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 91.1
d2awna2232 Maltose transport protein MalK, N-terminal domain 91.09
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 91.08
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 91.03
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 90.93
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 90.85
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 90.85
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 90.79
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 90.77
d1vmaa2213 GTPase domain of the signal recognition particle r 90.76
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 90.75
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 90.75
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 90.72
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 90.72
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 90.59
d1g3qa_237 Cell division regulator MinD {Archaeon Pyrococcus 90.53
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 90.5
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 90.47
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 90.32
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 90.32
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 90.28
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 90.26
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 90.24
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 90.2
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 90.16
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 90.03
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 89.94
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 89.89
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 89.82
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 89.77
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 89.77
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 89.67
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 89.65
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 89.61
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 89.58
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 89.57
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 89.52
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 89.5
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 89.5
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 89.46
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 89.4
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 89.36
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 89.16
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 89.03
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 89.0
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 88.96
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 88.9
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 88.84
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 88.79
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 88.79
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 88.7
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 88.68
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 88.6
d2bv3a2276 Elongation factor G (EF-G), N-terminal (G) domain 88.51
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 88.45
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 88.27
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 88.25
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 88.23
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 88.22
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 88.12
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 88.05
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 88.04
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 88.04
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 87.96
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 87.91
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 87.82
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 87.7
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 87.69
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 87.64
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 87.63
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 87.58
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 87.54
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 87.5
d2fh5b1207 Signal recognition particle receptor beta-subunit 87.49
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 87.47
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 87.44
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 87.26
d1svsa1195 Transducin (alpha subunit) {Rat (Rattus norvegicus 87.21
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 87.16
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 87.09
d2hyda1255 Putative multidrug export ATP-binding/permease pro 86.94
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 86.93
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 86.91
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 86.81
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 86.76
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 86.75
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 86.63
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 86.63
d1nrjb_209 Signal recognition particle receptor beta-subunit 86.54
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 86.48
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 86.45
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 86.26
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 86.18
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 86.11
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 86.1
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 86.1
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 86.03
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 86.02
d2dy1a2267 Elongation factor G (EF-G), N-terminal (G) domain 85.92
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 85.84
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 85.66
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 85.48
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 85.47
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 85.4
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 85.28
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 84.87
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 84.86
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 84.52
d2jdid3276 Central domain of beta subunit of F1 ATP synthase 84.45
d2bcjq2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 83.94
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 83.81
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 83.79
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 83.43
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 83.16
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 82.99
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 82.97
d1xpua3289 Transcription termination factor Rho, ATPase domai 82.79
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 82.65
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 82.49
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 82.43
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 82.34
d1g7sa4227 Initiation factor IF2/eIF5b, N-terminal (G) domain 82.17
d1p6xa_333 Thymidine kinase {Equine herpesvirus type 4 [TaxId 82.16
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 82.02
d1n0ua2341 Elongation factor 2 (eEF-2), N-terminal (G) domain 81.29
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 81.03
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 80.46
d2c78a3204 Elongation factor Tu (EF-Tu), N-terminal (G) domai 80.31
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=3.5e-17  Score=174.65  Aligned_cols=338  Identities=15%  Similarity=0.172  Sum_probs=175.2

Q ss_pred             CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEE
Q 003013          387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLK  466 (857)
Q Consensus       387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  466 (857)
                      .+|++|+++++ .++.+ .++..+++|++|++++| .++.++.++.+++|++|++++|. +..++. +  ..+++|+.|+
T Consensus        44 ~~l~~L~l~~~-~I~~l-~gl~~L~nL~~L~Ls~N-~l~~l~~l~~L~~L~~L~L~~n~-i~~i~~-l--~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-L--ANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSS-CCCCC-TTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCCEEE
T ss_pred             CCCCEEECCCC-CCCCc-cccccCCCCCEEeCcCC-cCCCCccccCCcccccccccccc-cccccc-c--cccccccccc
Confidence            67788888775 34555 35677788888888876 56677767777788888887776 555554 2  2277777777


Q ss_pred             EecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCch
Q 003013          467 IRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLR  546 (857)
Q Consensus       467 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~  546 (857)
                      +.++ ....++.......+..+....+ .+..+....... ........... .....   ................   
T Consensus       117 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~---  186 (384)
T d2omza2         117 LFNN-QITDIDPLKNLTNLNRLELSSN-TISDISALSGLT-SLQQLSFGNQV-TDLKP---LANLTTLERLDISSNK---  186 (384)
T ss_dssp             CCSS-CCCCCGGGTTCTTCSEEEEEEE-EECCCGGGTTCT-TCSEEEEEESC-CCCGG---GTTCTTCCEEECCSSC---
T ss_pred             cccc-cccccccccccccccccccccc-cccccccccccc-ccccccccccc-chhhh---hccccccccccccccc---
Confidence            7654 3334433333444444444332 111111111110 01111111111 11110   0011111111000000   


Q ss_pred             hhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCccee
Q 003013          547 TLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGI  626 (857)
Q Consensus       547 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l  626 (857)
                                        .........+++++.+.+.++                                         
T Consensus       187 ------------------~~~~~~~~~l~~~~~l~l~~n-----------------------------------------  207 (384)
T d2omza2         187 ------------------VSDISVLAKLTNLESLIATNN-----------------------------------------  207 (384)
T ss_dssp             ------------------CCCCGGGGGCTTCSEEECCSS-----------------------------------------
T ss_pred             ------------------cccccccccccccceeeccCC-----------------------------------------
Confidence                              000000002234555555443                                         


Q ss_pred             eccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCC
Q 003013          627 FIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSV  706 (857)
Q Consensus       627 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l  706 (857)
                            .+..++. ....++|+.|++++| .++.++ .+..+++|+.|++++|. +..++. +..+++|++|+++++ .+
T Consensus       208 ------~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~~-~l  275 (384)
T d2omza2         208 ------QISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGAN-QI  275 (384)
T ss_dssp             ------CCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CC
T ss_pred             ------ccCCCCc-ccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCc-cCCCCc-ccccccCCEeeccCc-cc
Confidence                  1222221 233566666666665 344443 23345667777776654 444443 556667777777665 33


Q ss_pred             cccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC--CCCCCCeEecCCCCCCcccCCCCC
Q 003013          707 VSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP--FPASLTELWISFMPDLECLSSIGE  784 (857)
Q Consensus       707 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~  784 (857)
                      ..++....++.++.+.+..|.... +.  .+..++++++|++++  +++..+++  .+++|++|++++| +++.++ ...
T Consensus       276 ~~~~~~~~~~~l~~l~~~~n~l~~-~~--~~~~~~~l~~L~ls~--n~l~~l~~l~~l~~L~~L~L~~n-~l~~l~-~l~  348 (384)
T d2omza2         276 SNISPLAGLTALTNLELNENQLED-IS--PISNLKNLTYLTLYF--NNISDISPVSSLTKLQRLFFANN-KVSDVS-SLA  348 (384)
T ss_dssp             CCCGGGTTCTTCSEEECCSSCCSC-CG--GGGGCTTCSEEECCS--SCCSCCGGGGGCTTCCEEECCSS-CCCCCG-GGG
T ss_pred             CCCCcccccccccccccccccccc-cc--ccchhcccCeEECCC--CCCCCCcccccCCCCCEEECCCC-CCCCCh-hHc
Confidence            444433344566666666665432 11  345566777777775  24454442  5677777777775 677776 456


Q ss_pred             CccccCceeccCCCCCCCCCCCCccccccceeecCC
Q 003013          785 NLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHC  820 (857)
Q Consensus       785 ~l~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i~~c  820 (857)
                      .+++|++|++++| .++.++.-.-.++|+.|+++++
T Consensus       349 ~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         349 NLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred             CCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence            7888888888887 6666654222258888888763
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure