Citrus Sinensis ID: 003087

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------85
MELYRQPRKTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLESKSVEERFNVSNYDRETVYSNHTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQWLNSSQGTDEINMFLSKIKDQAFILSECVDKVGRTEDSAKALLAHGLHLTNQYKFSETEDDEYSQIWDYRIARLQLLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAESGKIGALNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVAMREEDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRSLWPSINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFNTMLKGVKEENVIKRLRDKAIPFMQSRSHYLTSVGQEHVMVDQSSADHEKDESFLVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCALQCIYLCTATDKWSTMAAILSKLPQKQGKCCFKL
ccccccccccccEEEEEEcccccEEEEEEccEEEEEEccccccccEEEEEEccccccccccccccccEEEEEEcccEEEEEEcccccccccccccccccccEEEEEccccccccccccEEEEEEEcccEEEEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEcccccccccccccccccEEEEEEEccccccEEEEEEcccccccccccccccccccEEEEcccccEEEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEEcccccccccccccccccEEEEEEEccccccccccccccccccccHHHHHHcccccccccEEEEEEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccHHccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccc
ccHcccccHcccEEEEEEcccccEEEEEEccEEEEEEcccccccEEEEEEccccccccccEEcccccEEEEEEcccEEEEEEcccccccccccccccccHHHHHEEccccccccccHEEEEEEEEEcccEEEEEEEccccccccccccccccccccccccccEEEEEEccccEEEEEEEcccccccccccccccccEEEEEEccccccEEEEEcccccEEEcccccccccEEEEEEEcccccEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccEEcccccccEEEEEEEcccEEEEEEccccccccccHcccccEEEEEccccccccccccccHHccHEcccEEEEccccccccEEEEEEEEEEEccccHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHccccccccHHHHHHHHHccccccHHHHHHccccHHcccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccEEEcc
melyrqprktkKQVSLFISPRGERVAVAAVNQVTIlqkdddyqepcgifnctglgasiygawseshdvlgivddTHTVYFFKANGEEITRFTNKHLKVSLPIigliaqdetdvqrsclcsftvftsdgflhqieisqdpsasissasasssgltlrrqfpqnvictdyhpelsLLSVvsntdtssltssgnsgpccislWRRCHNLELEQLYTTQIeglycepkghevqlahpkvlispqgkfvatsdtngCLYIFEMdkdnfslskfacgerfdlqvadslfdgrtkpisditdfawwsDNILILARKSSIITMIDVLsglkvketdpklrghVFLLesksveerfnvsnydretvysNHTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYqtaidfanyhgldtdevlksqwlnssqgtDEINMFLSKIKDQAFILSECVDKVGRTEDSAKALLAHGlhltnqykfseteddeysQIWDYRIARLQLLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAESGKIGALNLLFKRHPYSLASSVLQILAaipetvpvqtytqllpgrsppmtvamrEEDWVECDKMVRFIRrlpenheisdqirtepiVRRSLRSLWPSINELTIWYKSrardidcysgqldnclcLIDFACRKGLTELQQFHEDTSYLYQLIysdetdgeisFSMSLTAWEQLSDYEKFNTMLKGVKEENVIKRLRDKaipfmqsrshyltsvgqehvmvdqssadhekdESFLVRWLKKIALENKVEICLLVIEEGCtefqskgffrdeseAIDCALQCIYLCTATDKWSTMAAILSKlpqkqgkccfkl
melyrqprktkkqvslfisprgervAVAAVNQVTilqkdddyqepCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSsltssgnsgpCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSglkvketdpklrghvfllesksveerfnvsnydretvysnhTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQWLNSSQGTDEINMFLSKIKDQAFILSECVDKVGRTEDSAKALLAhglhltnqykfseTEDDEYSQIWDYRIARLQLLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAESGKIGALNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVAMREEDWVECDKMVRFIRrlpenheisdqirtepivrrslrslwPSINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFNTmlkgvkeenvIKRLRDKAIPFMQSRSHYLTSVGQEHVMVDQSSADHEKDESFLVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCALQCIYLCTATDKWSTMAAILsklpqkqgkccfkl
MELYRQPRKTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPsasissasasssGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLESKSVEERFNVSNYDRETVYSNHTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQWLNSSQGTDEINMFLSKIKDQAFILSECVDKVGRTEDSAKALLAHGLHLTNQYKFSETEDDEYSQIWDYRIARLQLLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAESGKIGALNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVAMREEDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRSLWPSINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFNTMLKGVKEENVIKRLRDKAIPFMQSRSHYLTSVGQEHVMVDQSSADHEKDESFLVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCALQCIYLCTATDKWSTMAAILSKLPQKQGKCCFKL
***************LFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEI*********************RQFPQNVICTDYHPELSLLSVVS*************GPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLESKSVEERFNVSNYDRETVYSNHTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQWLNSSQGTDEINMFLSKIKDQAFILSECVDKVGRTEDSAKALLAHGLHLTNQYKFSETEDDEYSQIWDYRIARLQLLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAESGKIGALNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVAMREEDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRSLWPSINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFNTMLKGVKEENVIKRLRDKAIPFMQSRSHYLTSVG*****************SFLVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCALQCIYLCTATDKWSTMAAILSKLPQ****CC***
************QVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSAS**************RQFPQNVICTDYHPELSLLSVVSNTD*********SGPCCISLWRRCHNLELEQLY*****************LAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSL**GRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFL*******************VYSNHT**************MLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQWLNSSQGTDEINMFLSKIKDQAFILSECVDKVGRTEDSAKALLAHGLHLTNQ***********SQIWDYRIARLQLLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAESGKIGALNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVAMREEDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRSLWPSINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFNTMLKGVKEENVIKRLRDKAIPFMQSRSHYL*****************EKDESFLVRWLKKIALENKVEICLLVIE***********FRDESEAIDCALQCIYLCTATDKWSTMAAILSKLPQKQGK*****
**************SLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEIS*****************TLRRQFPQNVICTDYHPELSLLSVVS************SGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLESKSVEERFNVSNYDRETVYSNHTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQWLNSSQGTDEINMFLSKIKDQAFILSECVDKVGRTEDSAKALLAHGLHLTNQYKFSETEDDEYSQIWDYRIARLQLLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAESGKIGALNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVAMREEDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRSLWPSINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFNTMLKGVKEENVIKRLRDKAIPFMQSRSHYLTSVGQEHVMV*********DESFLVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCALQCIYLCTATDKWSTMAAILSKLPQK********
*ELYRQPRKTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDT**LT*SGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLESKSVEERFNVSNYDRETVYSNHTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQWLNSSQGTDEINMFLSKIKDQAFILSECVDKVGRTEDSAKALLAHGLHLTNQYKFSETEDDEYSQIWDYRIARLQLLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAESGKIGALNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVAMREEDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRSLWPSINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFNTMLKGVKEENVIKRLRDKAIPFMQSRSHYLTSVGQEHVMVDQSSADHEKDESFLVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCALQCIYLCTATDKWSTMAAILSKLPQKQGKCCFKL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELYRQPRKTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNILILARKSSIITMIDVLSGLKVKETDPKLRGHVFLLESKSVEERFNVSNYDRETVYSNHTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHGLDTDEVLKSQWLNSSQGTDEINMFLSKIKDQAFILSECVDKVGRTEDSAKALLAHGLHLTNQYKFSETEDDEYSQIWDYRIARLQLLQFGDRLETYLGINMGRYYAEYSKFRIMPIHEAGVNLAESGKIGALNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVAMREEDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRSLWPSINELTIWYKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFNTMLKGVKEENVIKRLRDKAIPFMQSRSHYLTSVGQEHVMVDQSSADHEKDESFLVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCALQCIYLCTATDKWSTMAAILSKLPQKQGKCCFKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query849 2.2.26 [Sep-21-2011]
Q5TYW4 2372 Neuroblastoma-amplified s yes no 0.937 0.335 0.226 1e-28
A2RRP1 2371 Neuroblastoma-amplified s yes no 0.376 0.134 0.248 1e-15
>sp|Q5TYW4|NBAS_DANRE Neuroblastoma-amplified sequence OS=Danio rerio GN=nbas PE=2 SV=1 Back     alignment and function desciption
 Score =  129 bits (323), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 222/978 (22%), Positives = 363/978 (37%), Gaps = 182/978 (18%)

Query: 8    RKTKKQVS--LFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYG--AWS 63
            R   KQV+  L ++  G+ +AV     V I    DD+    G           +   AWS
Sbjct: 71   RLATKQVNWQLVLASNGKLLAVVQDQCVEIRSARDDFGSIIGKCQVPKDPNPHWRRVAWS 130

Query: 64   ESHDVLGIVDDTHTVYFFKANGEE---ITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCS 120
                +L   D T TV  F   G E   I    +     S    GL+  + T   +     
Sbjct: 131  HDCALLAYADSTGTVRVFDLMGSELFIIPPAMSFPGDFSYAAAGLMFLEYTGSAQWS-AE 189

Query: 121  FTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSN 180
              V T  G L    +S       +     +   +    +   +    YHP   LL V   
Sbjct: 190  LLVITYSGQLKSYLVS----VGTNQGFQENHTFSFSAHYSNGITTAIYHPGHRLLLVGGC 245

Query: 181  TDTSSLTSSGNSGPCCISLWRRCHNLEL--------EQLYTTQIEGLYCEP------KGH 226
                S  S  +   C I+ WR    L          + + ++Q  G +  P      + +
Sbjct: 246  ESGDSDVSRASQ--CGITAWRVLSGLPHYKQVTSYEDDISSSQRRGFFKMPSFRLFSRHN 303

Query: 227  EVQLAHPKVLISPQGKFVATSDTNGCLYIFEMD----KDNFSLSKFACGERFDLQVADSL 282
              Q    ++ +SP G  +A    +G L ++++     + ++   +    +  + +   SL
Sbjct: 304  GEQDGVFRMSLSPDGTILAVIHFSGSLSLWDIPSFKLRGSWKQEEQPGFDEINPEWKTSL 363

Query: 283  FDGRTKPISD------ITDFAWWSDNILILARKSSIITMIDVLS---------------- 320
               + K I D      + D +WWS+  LILAR S  +T+  V +                
Sbjct: 364  --EKRKKIKDKEQYQSLLDVSWWSETALILARCSGALTVSSVRTLKNLLGKSCEWFEPSP 421

Query: 321  --------GLKVKETDPKLRGHVFLLESK------------------SVEERFNVSNYDR 354
                    G    E + KL      LES                   S + R+    Y +
Sbjct: 422  RVTSAHDGGFLSLECEVKLAHKRSRLESSVKGEEDDGDDDSDSDEEASAKARY--FGYVK 479

Query: 355  ETVYSNHTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANYHG 414
            + +Y    ++       R    +  + L+S    +  E+Y   I +  Y  A+  A  +G
Sbjct: 480  QGLYYVTEMERFAPPRKRPRTVIKNYRLVSLRSTTPEELYQRKIDNEEYGEALSLAQAYG 539

Query: 415  LDTDEVLKSQWLNSSQGTDEINMFLSKIKDQAFILSECVDKV------------------ 456
            LD+D V + QW  S+     I  +LSKIK ++++L ECV++V                  
Sbjct: 540  LDSDLVYQRQWRKSTVSIASIQDYLSKIKKRSWVLHECVERVPENVDAAKELLQYGLKGT 599

Query: 457  --------GRTEDSAKALLAHGLHLTN--------------QYKFSETED-DEYSQIWDY 493
                    G  ED  + +L+  L + +              Q K  E++   E  +  D+
Sbjct: 600  DLEALIAIGAREDQGRFILSGDLDMDDAPYEDFLSMEEELEQRKERESKKRQELLKKVDF 659

Query: 494  RI----------ARLQLLQFGDRLETYLGINMGRYYAE-------YSKFRIMPIHEAGVN 536
                        +RL+LL + DRL TY  I  G + AE       + KFR   I  +   
Sbjct: 660  SKLTLEQKELCRSRLKLLCYLDRLATYEEILGGPHAAEQRFDGEFFKKFRNQNIVLSART 719

Query: 537  LAESGKIGALNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRS----------P 586
             A    + AL++LF  H   L    L IL   PET     Y+ LLP             P
Sbjct: 720  YARESNVQALDILFTYHGAELLQHRLAILCNFPETTSPHEYSDLLPKAGVDKEGNLVLIP 779

Query: 587  PMTVAMREEDWVECDKMVRFIRRLPENHEISD---QIRTEPIVRRSLRSLWPSINELTIW 643
                  R+ DW E    V   R + E   + D       +P + R  RS  P I  LT W
Sbjct: 780  WEESRHRDLDWCE----VLECREVVEPKPMDDCQFLYEEQPELER-FRSADPFITLLTEW 834

Query: 644  YKSRARDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSM 703
            Y +RA+DI+ +S Q+D  L L+     + +  L++  +D   +  L+Y    D     S+
Sbjct: 835  YLTRAQDIESHSRQVDCSLSLVRLGKEQNIPGLERLCDDLVTMETLVYETSCD----LSV 890

Query: 704  SLTAWEQLSDYEKFNTMLKGVKEENVIKRLRDKAIPFMQSRSHYLTSVGQEHVMVDQSSA 763
            +L   +QL D +K   ++K   E+  ++      +PF+          GQ    V  +S 
Sbjct: 891  TLKELQQLRDIDKLRLLMKNSSEDRYVRNCFQWMVPFLHR------CEGQR---VGSAS- 940

Query: 764  DHEKDESFLVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCALQCIYLCT 823
                  S L  +L  +A ++ + + L + +    +   K    D  + +  AL+CIY C 
Sbjct: 941  ------SLLREYLVTLA-KDDLTLPLKLFQHSKPDCHPK-IIGDSDQLMTVALKCIYSCE 992

Query: 824  ATDKWSTMAAILSKLPQK 841
              D+ +    +L  LPQ+
Sbjct: 993  RDDQLALCYDVLECLPQR 1010

Danio rerio (taxid: 7955)
>sp|A2RRP1|NBAS_HUMAN Neuroblastoma-amplified sequence OS=Homo sapiens GN=NBAS PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query849
359490820 2390 PREDICTED: uncharacterized protein LOC10 0.971 0.345 0.629 0.0
399920193 2445 hypothetical protein [Rosa rugosa] 0.969 0.336 0.609 0.0
255549258 2429 conserved hypothetical protein [Ricinus 0.985 0.344 0.606 0.0
224118362 2414 predicted protein [Populus trichocarpa] 0.962 0.338 0.592 0.0
224135083 2421 predicted protein [Populus trichocarpa] 0.955 0.334 0.579 0.0
449449685 2405 PREDICTED: uncharacterized protein LOC10 0.975 0.344 0.540 0.0
449479783 2405 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.975 0.344 0.540 0.0
297808449 2379 hypothetical protein ARALYDRAFT_910470 [ 0.949 0.338 0.544 0.0
15237942 2376 uncharacterized protein [Arabidopsis tha 0.950 0.339 0.534 0.0
356507568 2382 PREDICTED: uncharacterized protein LOC10 0.962 0.342 0.531 0.0
>gi|359490820|ref|XP_002271655.2| PREDICTED: uncharacterized protein LOC100258836 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1083 bits (2800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/858 (62%), Positives = 658/858 (76%), Gaps = 33/858 (3%)

Query: 4   YRQPRKTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWS 63
           YR+P+K K+ VSLF+S RGERVAVAA NQ+TILQKDD+YQEPCGIF    LG  IYGAWS
Sbjct: 50  YRRPKKLKRWVSLFVSLRGERVAVAAGNQITILQKDDNYQEPCGIFTSNSLGTFIYGAWS 109

Query: 64  ESHDVLGIVDDTHTVYFFKANGEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTV 123
           ESHDVLG+ DD+ T+YF K NGEE+ R T  HLKVS PIIGLI QD++D + SCLCSF +
Sbjct: 110 ESHDVLGVCDDSETLYFIKGNGEEMARSTRAHLKVSSPIIGLIPQDDSDTRGSCLCSFNL 169

Query: 124 FTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDT 183
            TSDGFLH IEISQDP+ SISS   SS+GLTL++QFPQ+V C DYH +LSLL VV +  +
Sbjct: 170 LTSDGFLHNIEISQDPAVSISSFRTSSNGLTLKKQFPQHVFCLDYHVKLSLLIVVGSASS 229

Query: 184 SSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKF 243
            S+TSSG +G   +SLWRR  +L+LE + +TQ+EGLY +PKG+  Q+   KVLISP GKF
Sbjct: 230 ISITSSGTTGSHHLSLWRRSSSLDLEPVCSTQVEGLYSKPKGYIGQITSSKVLISPHGKF 289

Query: 244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI 303
           VAT D  GCL IF++D +  SLS FA G R D Q  D+L +   K ++ I DF WWSD+ 
Sbjct: 290 VATLDLTGCLDIFKLDGECCSLSSFAYGMRNDSQETDNLSNEVGKFLNGIVDFTWWSDHT 349

Query: 304 LILARKSSIITMIDVLSGLKVKETDP-----------KLRGHVFLLESKSVEERFNVSNY 352
           L+LA++S  + M+D+LSG+K+   DP           + +G  FLLES S EE+ N+S +
Sbjct: 350 LVLAKRSGTVIMLDILSGIKLLGNDPVYSMPVLERVQQFQGQFFLLESTSSEEKHNISTH 409

Query: 353 DRETVYSNHTVQLIEERFNRSGNTMLYWSLISFSERSVPEMYNILISHRNYQTAIDFANY 412
             ET   +H   + E+R N++    L WSLISFSERSVPEMYNILIS+  YQ A++FA  
Sbjct: 410 G-ETGDLHHIELVTEDRLNQADIARLQWSLISFSERSVPEMYNILISNTKYQAALEFAVR 468

Query: 413 HGLDTDEVLKSQWLNSSQGTDEINMFLSKIKDQAFILSECVDKVGRTEDSAKALLAHGLH 472
           HGLDTDEVLKSQWL+S QG +EIN  LS IKDQ F+LSECV+KVG TED+ KALLA+GLH
Sbjct: 469 HGLDTDEVLKSQWLHSGQGINEINTLLSNIKDQDFVLSECVNKVGPTEDAVKALLAYGLH 528

Query: 473 LTNQYKFSETEDDEYSQIWDYRIARLQLLQFGDRLETYLGINMGRYYA-EYSKFRIMPIH 531
           LT++ +FSE++D    QIWD+R  RLQLLQF DRLET+LGINMGR+   EY+KFRIMPI+
Sbjct: 529 LTSRCRFSESDDHGNGQIWDFRKVRLQLLQFRDRLETFLGINMGRFSVQEYNKFRIMPIN 588

Query: 532 EAGVNLAESGKIGALNLLFKRHPYSLASSVLQILAAIPETVPVQTYTQLLPGRSPPMTVA 591
           +A V LAESGKIGALNLLFKRHPY+L  S+L+ILAA+PET+PVQTY QLLPGRSPP + A
Sbjct: 589 KAAVALAESGKIGALNLLFKRHPYTLTPSMLEILAAVPETIPVQTYGQLLPGRSPPTSFA 648

Query: 592 MREEDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRSLWPSINELTIWYKSRARDI 651
           +REEDWVEC+KMV FI RLPE+ + S +IRTEPIVR+ L   WPS +EL+ WYK+RARDI
Sbjct: 649 LREEDWVECEKMVSFINRLPEDKDSSVRIRTEPIVRQILGFSWPSADELSSWYKNRARDI 708

Query: 652 DCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQL 711
           D +SGQLDNCLCLIDFACRKG+ ELQQF+ED +YL+QLIYSD +D EI+F+M+L AWEQL
Sbjct: 709 DTFSGQLDNCLCLIDFACRKGIGELQQFYEDITYLHQLIYSDGSDSEINFTMNLCAWEQL 768

Query: 712 SDYEKFNTMLKGVKEENVIKRLRDKAIPFMQSRSHYLTSVGQEHVMVDQSSADHEKDESF 771
           SDYEKF  MLKGVKEENV++RLRDKAIPFMQ+                      +  ESF
Sbjct: 769 SDYEKFKMMLKGVKEENVVERLRDKAIPFMQN--------------------SFQDAESF 808

Query: 772 LVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCALQCIYLCTATDKWSTM 831
           LVRWLK++ALENK++ICL+VIEEGC +F+S G F+DE EA  CALQC+YLCT TD+WSTM
Sbjct: 809 LVRWLKEVALENKLDICLMVIEEGCKDFESTGIFKDEVEAAYCALQCLYLCTVTDRWSTM 868

Query: 832 AAILSKLPQKQGKCCFKL 849
           +AILSKLP  QGK C  L
Sbjct: 869 SAILSKLPHVQGKLCCGL 886

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|399920193|gb|AFP55540.1| hypothetical protein [Rosa rugosa] Back     alignment and taxonomy information
>gi|255549258|ref|XP_002515683.1| conserved hypothetical protein [Ricinus communis] gi|223545226|gb|EEF46735.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224118362|ref|XP_002317800.1| predicted protein [Populus trichocarpa] gi|222858473|gb|EEE96020.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224135083|ref|XP_002321979.1| predicted protein [Populus trichocarpa] gi|222868975|gb|EEF06106.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449449685|ref|XP_004142595.1| PREDICTED: uncharacterized protein LOC101209372 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479783|ref|XP_004155706.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228677 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297808449|ref|XP_002872108.1| hypothetical protein ARALYDRAFT_910470 [Arabidopsis lyrata subsp. lyrata] gi|297317945|gb|EFH48367.1| hypothetical protein ARALYDRAFT_910470 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237942|ref|NP_197823.1| uncharacterized protein [Arabidopsis thaliana] gi|10177896|dbj|BAB11228.1| unnamed protein product [Arabidopsis thaliana] gi|332005913|gb|AED93296.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356507568|ref|XP_003522536.1| PREDICTED: uncharacterized protein LOC100805223 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query849
ZFIN|ZDB-GENE-041014-367 2372 nbas "neuroblastoma amplified 0.282 0.101 0.281 4.1e-28
UNIPROTKB|A2RRP1 2371 NBAS "Neuroblastoma-amplified 0.375 0.134 0.250 1.3e-27
ZFIN|ZDB-GENE-041014-367 nbas "neuroblastoma amplified sequence" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 217 (81.4 bits), Expect = 4.1e-28, Sum P(5) = 4.1e-28
 Identities = 74/263 (28%), Positives = 117/263 (44%)

Query:   496 ARLQLLQFGDRLETYLGINMGRYYAE-------YSKFRIMPIHEAGVNLAESGKIGALNL 548
             +RL+LL + DRL TY  I  G + AE       + KFR   I  +    A    + AL++
Sbjct:   672 SRLKLLCYLDRLATYEEILGGPHAAEQRFDGEFFKKFRNQNIVLSARTYARESNVQALDI 731

Query:   549 LFKRHPYSLASSVLQILAAIPETVPVQTYTQLLP--GRSPPMTVAM--------REEDWV 598
             LF  H   L    L IL   PET     Y+ LLP  G      + +        R+ DW 
Sbjct:   732 LFTYHGAELLQHRLAILCNFPETTSPHEYSDLLPKAGVDKEGNLVLIPWEESRHRDLDWC 791

Query:   599 ECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRSLWPSINELTIWYKSRARDIDCYSGQL 658
             E  +    +   P + +       +P + R  RS  P I  LT WY +RA+DI+ +S Q+
Sbjct:   792 EVLECREVVEPKPMD-DCQFLYEEQPELER-FRSADPFITLLTEWYLTRAQDIESHSRQV 849

Query:   659 DNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAWEQLSDYEKFN 718
             D  L L+     + +  L++  +D   +  L+Y    D     S++L   +QL D +K  
Sbjct:   850 DCSLSLVRLGKEQNIPGLERLCDDLVTMETLVYETSCD----LSVTLKELQQLRDIDKLR 905

Query:   719 TMLKGVKEENVIKRLRDKAIPFM 741
              ++K   E+  ++      +PF+
Sbjct:   906 LLMKNSSEDRYVRNCFQWMVPFL 928
GO:0009790 "embryo development" evidence=IMP
GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IMP
UNIPROTKB|A2RRP1 NBAS "Neuroblastoma-amplified sequence" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037212001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (2505 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query849
pfam08314 675 pfam08314, Sec39, Secretory pathway protein Sec39 4e-27
>gnl|CDD|219788 pfam08314, Sec39, Secretory pathway protein Sec39 Back     alignment and domain information 
 Score =  117 bits (295), Expect = 4e-27
 Identities = 62/309 (20%), Positives = 108/309 (34%), Gaps = 36/309 (11%)

Query: 537 LAESGKIGALNLLFKRHPYSLASS-VLQI-LAAIPETVPVQTYTQLLPGRSPPMTVAMRE 594
           LA  G + AL  L  RH   L S  +L+I L  +PET+  Q Y  LLP        +  E
Sbjct: 8   LAARGDVKALEKLLARHGSLLRSERLLRILLTFLPETLDPQDYVFLLPQLESGQLPSGEE 67

Query: 595 EDWVECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRS----LWPSINELTIWYKSRARD 650
           +     ++    +  +    +     +   +    LRS         + L+ + ++RA  
Sbjct: 68  QLVSLIEQDESDLSLVESLQDTVALKKVALLRLLPLRSPDDPDIDPDDLLSSFLRARALK 127

Query: 651 IDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETD------GEISFSMS 704
           +D  SG L   L L           L  F + +  L Q +                 +++
Sbjct: 128 VDEESGLLPLILQL-----------LLPFLDRSPKLRQWVIGILLPLLRLNYEYYPVTLT 176

Query: 705 LTAWEQLSDYEKFNTMLKGVKEEN--VIKRLRDKAIPFMQSRSHYLTSVGQEHVMVDQSS 762
           L  +E L D E  N +L G  +E   V + LR    P++  ++ +      E       +
Sbjct: 177 LDEFESLDDSEAVNLLLSGTSDEKADVGRDLRGLLGPWLYYKNRWKRRRFLELFRNSSIT 236

Query: 763 ADHEKDE------SFLVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCAL 816
                +         +++WL   +  +   +   V +    +  S      E      AL
Sbjct: 237 LLKSNESFKSEGWYQVLKWLLSHSSPDWQSVVNAVQQWDGEDLAS-----LEDRLGQAAL 291

Query: 817 QCIYLCTAT 825
             IYL +  
Sbjct: 292 AIIYLNSDN 300

Mnaimneh et al identified Sec39p as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes. Kraynack et al. (2005) showed that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p. This was confirmed in a genome-wide analysis of protein complexes by Gavin et al (2006). Length = 675

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 849
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
PF08314 715 Sec39: Secretory pathway protein Sec39; InterPro: 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 100.0
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 99.98
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 99.98
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 99.97
KOG0263707 consensus Transcription initiation factor TFIID, s 99.97
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.96
KOG0315311 consensus G-protein beta subunit-like protein (con 99.96
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.95
KOG4256 2209 consensus Kinetochore component [Cell cycle contro 99.95
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.95
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.94
KOG0645312 consensus WD40 repeat protein [General function pr 99.94
KOG0291893 consensus WD40-repeat-containing subunit of the 18 99.94
KOG0266456 consensus WD40 repeat-containing protein [General 99.93
KOG0319775 consensus WD40-repeat-containing subunit of the 18 99.93
KOG0263707 consensus Transcription initiation factor TFIID, s 99.92
KOG0286343 consensus G-protein beta subunit [General function 99.92
KOG0291893 consensus WD40-repeat-containing subunit of the 18 99.92
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.91
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.91
KOG0295406 consensus WD40 repeat-containing protein [Function 99.91
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.91
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.9
KOG0266456 consensus WD40 repeat-containing protein [General 99.9
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.9
KOG0645312 consensus WD40 repeat protein [General function pr 99.9
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.9
PLN00181793 protein SPA1-RELATED; Provisional 99.9
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.9
PTZ00421493 coronin; Provisional 99.89
KOG0295406 consensus WD40 repeat-containing protein [Function 99.89
KOG0286343 consensus G-protein beta subunit [General function 99.89
PLN00181793 protein SPA1-RELATED; Provisional 99.89
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.88
KOG0319775 consensus WD40-repeat-containing subunit of the 18 99.88
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.88
KOG0772641 consensus Uncharacterized conserved protein, conta 99.87
KOG0315311 consensus G-protein beta subunit-like protein (con 99.87
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.87
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.86
PTZ00420568 coronin; Provisional 99.86
KOG0293519 consensus WD40 repeat-containing protein [Function 99.86
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.85
PTZ00421493 coronin; Provisional 99.85
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.85
KOG0973942 consensus Histone transcription regulator HIRA, WD 99.85
KOG0643327 consensus Translation initiation factor 3, subunit 99.85
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.85
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.84
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.84
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.84
KOG0641350 consensus WD40 repeat protein [General function pr 99.84
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.84
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.83
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.83
KOG0296399 consensus Angio-associated migratory cell protein 99.83
KOG0283712 consensus WD40 repeat-containing protein [Function 99.82
KOG1797 1660 consensus Uncharacterized conserved protein (Neuro 99.82
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.82
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.81
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.81
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.81
PTZ00420568 coronin; Provisional 99.81
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.81
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.81
KOG0973942 consensus Histone transcription regulator HIRA, WD 99.8
KOG0293519 consensus WD40 repeat-containing protein [Function 99.8
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.8
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.8
KOG2096420 consensus WD40 repeat protein [General function pr 99.79
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 99.79
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 99.79
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.79
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.78
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.78
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.77
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.77
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.77
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.77
KOG0772641 consensus Uncharacterized conserved protein, conta 99.76
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.76
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.76
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.76
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.76
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.76
KOG0301745 consensus Phospholipase A2-activating protein (con 99.75
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.74
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.74
KOG0283712 consensus WD40 repeat-containing protein [Function 99.74
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.73
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.73
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.73
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.73
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.72
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.72
KOG0296399 consensus Angio-associated migratory cell protein 99.72
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.71
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.7
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.7
KOG0294362 consensus WD40 repeat-containing protein [Function 99.69
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.68
KOG0289506 consensus mRNA splicing factor [General function p 99.68
KOG0300481 consensus WD40 repeat-containing protein [Function 99.67
KOG0646476 consensus WD40 repeat protein [General function pr 99.67
KOG1274 933 consensus WD40 repeat protein [General function pr 99.66
KOG0267825 consensus Microtubule severing protein katanin p80 99.66
KOG0269839 consensus WD40 repeat-containing protein [Function 99.66
KOG2048691 consensus WD40 repeat protein [General function pr 99.66
KOG0289506 consensus mRNA splicing factor [General function p 99.65
KOG2096420 consensus WD40 repeat protein [General function pr 99.64
KOG0269839 consensus WD40 repeat-containing protein [Function 99.64
KOG0301745 consensus Phospholipase A2-activating protein (con 99.63
KOG0639705 consensus Transducin-like enhancer of split protei 99.63
KOG0639705 consensus Transducin-like enhancer of split protei 99.62
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.62
KOG0643327 consensus Translation initiation factor 3, subunit 99.62
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.61
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.6
KOG1274 933 consensus WD40 repeat protein [General function pr 99.6
KOG1273405 consensus WD40 repeat protein [General function pr 99.6
PRK11028330 6-phosphogluconolactonase; Provisional 99.59
KOG4283397 consensus Transcription-coupled repair protein CSA 99.58
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.58
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.58
KOG0302440 consensus Ribosome Assembly protein [General funct 99.58
KOG4283397 consensus Transcription-coupled repair protein CSA 99.57
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.57
KOG2048691 consensus WD40 repeat protein [General function pr 99.57
PRK01742429 tolB translocation protein TolB; Provisional 99.57
KOG2055514 consensus WD40 repeat protein [General function pr 99.56
KOG0641350 consensus WD40 repeat protein [General function pr 99.56
KOG0300481 consensus WD40 repeat-containing protein [Function 99.55
KOG4328498 consensus WD40 protein [Function unknown] 99.54
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.53
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.52
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.52
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 99.52
KOG14081080 consensus WD40 repeat protein [Function unknown] 99.52
KOG0267825 consensus Microtubule severing protein katanin p80 99.52
KOG0771398 consensus Prolactin regulatory element-binding pro 99.51
KOG0270463 consensus WD40 repeat-containing protein [Function 99.5
KOG0302440 consensus Ribosome Assembly protein [General funct 99.5
KOG0646476 consensus WD40 repeat protein [General function pr 99.49
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.49
PRK03629429 tolB translocation protein TolB; Provisional 99.48
KOG2106626 consensus Uncharacterized conserved protein, conta 99.48
KOG1539910 consensus WD repeat protein [General function pred 99.48
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.47
PRK01742429 tolB translocation protein TolB; Provisional 99.47
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.47
KOG1539910 consensus WD repeat protein [General function pred 99.46
KOG14081080 consensus WD40 repeat protein [Function unknown] 99.46
KOG2055514 consensus WD40 repeat protein [General function pr 99.46
COG2319466 FOG: WD40 repeat [General function prediction only 99.45
KOG1963792 consensus WD40 repeat protein [General function pr 99.44
PRK11028330 6-phosphogluconolactonase; Provisional 99.44
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.44
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.44
KOG0294362 consensus WD40 repeat-containing protein [Function 99.44
KOG4328498 consensus WD40 protein [Function unknown] 99.44
KOG0771398 consensus Prolactin regulatory element-binding pro 99.44
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.43
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.41
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 99.41
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.4
PRK05137435 tolB translocation protein TolB; Provisional 99.38
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 99.37
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.36
KOG2106626 consensus Uncharacterized conserved protein, conta 99.36
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.36
COG2319466 FOG: WD40 repeat [General function prediction only 99.36
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.35
KOG14451012 consensus Tumor-specific antigen (contains WD repe 99.35
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.34
KOG14451012 consensus Tumor-specific antigen (contains WD repe 99.33
PRK04922433 tolB translocation protein TolB; Provisional 99.33
PRK05137435 tolB translocation protein TolB; Provisional 99.33
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.33
PRK03629429 tolB translocation protein TolB; Provisional 99.32
PRK02889427 tolB translocation protein TolB; Provisional 99.32
KOG2110391 consensus Uncharacterized conserved protein, conta 99.31
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.31
PRK04922433 tolB translocation protein TolB; Provisional 99.3
KOG4227609 consensus WD40 repeat protein [General function pr 99.3
PRK02889427 tolB translocation protein TolB; Provisional 99.29
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.29
KOG0303472 consensus Actin-binding protein Coronin, contains 99.28
KOG4497447 consensus Uncharacterized conserved protein WDR8, 99.25
KOG1963792 consensus WD40 repeat protein [General function pr 99.23
KOG0644 1113 consensus Uncharacterized conserved protein, conta 99.2
KOG0270463 consensus WD40 repeat-containing protein [Function 99.2
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.16
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 99.16
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.15
KOG1272545 consensus WD40-repeat-containing subunit of the 18 99.15
PRK00178430 tolB translocation protein TolB; Provisional 99.14
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.13
PRK01029428 tolB translocation protein TolB; Provisional 99.13
KOG0649325 consensus WD40 repeat protein [General function pr 99.12
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.11
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.11
PRK04792448 tolB translocation protein TolB; Provisional 99.1
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 99.1
KOG1188376 consensus WD40 repeat protein [General function pr 99.1
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.09
KOG2139445 consensus WD40 repeat protein [General function pr 99.09
KOG2111346 consensus Uncharacterized conserved protein, conta 99.08
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 99.08
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.07
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 99.06
PRK04792448 tolB translocation protein TolB; Provisional 99.06
KOG2110391 consensus Uncharacterized conserved protein, conta 99.04
KOG2139445 consensus WD40 repeat protein [General function pr 99.04
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.04
KOG2111346 consensus Uncharacterized conserved protein, conta 99.04
KOG0303472 consensus Actin-binding protein Coronin, contains 99.03
PRK01029428 tolB translocation protein TolB; Provisional 99.01
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.0
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 99.0
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.0
PRK00178430 tolB translocation protein TolB; Provisional 98.99
KOG12401431 consensus Protein kinase containing WD40 repeats [ 98.99
KOG1273405 consensus WD40 repeat protein [General function pr 98.97
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 98.97
KOG0290364 consensus Conserved WD40 repeat-containing protein 98.96
KOG1188376 consensus WD40 repeat protein [General function pr 98.93
KOG0322323 consensus G-protein beta subunit-like protein GNB1 98.92
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.89
KOG1310758 consensus WD40 repeat protein [General function pr 98.88
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 98.88
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 98.87
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.84
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 98.8
PLN029191057 haloacid dehalogenase-like hydrolase family protei 98.78
KOG2321703 consensus WD40 repeat protein [General function pr 98.74
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 98.74
KOG15171387 consensus Guanine nucleotide binding protein MIP1 98.73
KOG0649325 consensus WD40 repeat protein [General function pr 98.73
KOG1334559 consensus WD40 repeat protein [General function pr 98.66
KOG4227609 consensus WD40 repeat protein [General function pr 98.64
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 98.63
KOG15171387 consensus Guanine nucleotide binding protein MIP1 98.62
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 98.62
KOG1310758 consensus WD40 repeat protein [General function pr 98.61
KOG4497447 consensus Uncharacterized conserved protein WDR8, 98.61
KOG12401431 consensus Protein kinase containing WD40 repeats [ 98.6
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.54
KOG1272545 consensus WD40-repeat-containing subunit of the 18 98.53
KOG0974967 consensus WD-repeat protein WDR6, WD repeat superf 98.53
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 98.51
KOG3881412 consensus Uncharacterized conserved protein [Funct 98.5
PRK04043419 tolB translocation protein TolB; Provisional 98.49
KOG4547541 consensus WD40 repeat-containing protein [General 98.48
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 98.48
PRK04043419 tolB translocation protein TolB; Provisional 98.47
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.45
KOG2315566 consensus Predicted translation initiation factor 98.45
KOG0644 1113 consensus Uncharacterized conserved protein, conta 98.42
KOG1797 1660 consensus Uncharacterized conserved protein (Neuro 98.4
PLN029191057 haloacid dehalogenase-like hydrolase family protei 98.38
KOG4532344 consensus WD40-like repeat containing protein [Gen 98.36
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 98.28
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 98.27
KOG4547541 consensus WD40 repeat-containing protein [General 98.22
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 98.21
KOG3881412 consensus Uncharacterized conserved protein [Funct 98.2
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 98.19
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 98.16
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 98.15
KOG2321703 consensus WD40 repeat protein [General function pr 98.15
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 98.14
KOG2314698 consensus Translation initiation factor 3, subunit 98.09
KOG2315566 consensus Predicted translation initiation factor 98.09
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 98.08
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.05
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 98.04
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 98.01
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 97.99
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 97.96
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 97.92
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 97.9
COG4946668 Uncharacterized protein related to the periplasmic 97.89
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 97.85
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 97.8
KOG4532344 consensus WD40-like repeat containing protein [Gen 97.69
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 97.69
COG4946668 Uncharacterized protein related to the periplasmic 97.67
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 97.6
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 97.6
KOG0280339 consensus Uncharacterized conserved protein [Amino 97.54
COG0823425 TolB Periplasmic component of the Tol biopolymer t 97.51
KOG1912 1062 consensus WD40 repeat protein [General function pr 97.47
KOG1409404 consensus Uncharacterized conserved protein, conta 97.43
KOG41901034 consensus Uncharacterized conserved protein [Funct 97.4
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 97.4
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 97.37
KOG1409404 consensus Uncharacterized conserved protein, conta 97.37
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 97.35
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 97.18
KOG41901034 consensus Uncharacterized conserved protein [Funct 97.14
KOG0280339 consensus Uncharacterized conserved protein [Amino 97.14
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 97.1
KOG3621726 consensus WD40 repeat-containing protein [General 97.0
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 96.99
KOG2041 1189 consensus WD40 repeat protein [General function pr 96.98
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 96.87
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 96.87
KOG1334559 consensus WD40 repeat protein [General function pr 96.87
KOG2314698 consensus Translation initiation factor 3, subunit 96.82
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 96.54
KOG2041 1189 consensus WD40 repeat protein [General function pr 96.53
KOG2695425 consensus WD40 repeat protein [General function pr 96.53
PF14655415 RAB3GAP2_N: Rab3 GTPase-activating protein regulat 96.5
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 96.48
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 96.46
PRK13616591 lipoprotein LpqB; Provisional 96.43
PRK02888635 nitrous-oxide reductase; Validated 96.42
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 96.4
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 96.36
KOG1008783 consensus Uncharacterized conserved protein, conta 96.25
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 96.2
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 96.19
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 96.19
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 96.19
smart0032040 WD40 WD40 repeats. Note that these repeats are per 96.14
KOG4714319 consensus Nucleoporin [Nuclear structure] 96.13
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 96.13
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 96.12
KOG4714319 consensus Nucleoporin [Nuclear structure] 96.05
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 96.02
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 95.96
smart0032040 WD40 WD40 repeats. Note that these repeats are per 95.95
KOG1912 1062 consensus WD40 repeat protein [General function pr 95.83
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 95.73
PRK13616591 lipoprotein LpqB; Provisional 95.62
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 95.51
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 95.42
COG0823425 TolB Periplasmic component of the Tol biopolymer t 95.17
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 95.16
PRK02888635 nitrous-oxide reductase; Validated 95.11
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 94.98
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 94.8
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 94.68
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 94.62
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 94.52
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 94.46
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 94.42
KOG2695425 consensus WD40 repeat protein [General function pr 94.39
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 94.33
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 94.12
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 94.1
KOG3621726 consensus WD40 repeat-containing protein [General 93.96
COG3391381 Uncharacterized conserved protein [Function unknow 93.57
PF07995331 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: 93.56
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 93.18
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 93.18
COG3391381 Uncharacterized conserved protein [Function unknow 93.17
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 93.15
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 93.15
PF07995331 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: 93.04
KOG2377657 consensus Uncharacterized conserved protein [Funct 92.73
PRK13684334 Ycf48-like protein; Provisional 92.45
TIGR02604367 Piru_Ver_Nterm putative membrane-bound dehydrogena 92.33
PLN00033398 photosystem II stability/assembly factor; Provisio 92.26
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 92.15
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 91.97
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 91.72
PF1031343 DUF2415: Uncharacterised protein domain (DUF2415); 91.26
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 90.87
PF12657173 TFIIIC_delta: Transcription factor IIIC subunit de 90.85
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 89.86
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 89.19
COG3204316 Uncharacterized protein conserved in bacteria [Fun 88.93
COG3386307 Gluconolactonase [Carbohydrate transport and metab 88.7
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 88.42
KOG2444238 consensus WD40 repeat protein [General function pr 88.21
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 87.92
PF08728717 CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans 87.41
TIGR03606454 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH 87.02
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 87.01
PRK10115686 protease 2; Provisional 86.74
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 86.53
PF12234631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 85.77
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 85.43
KOG1008783 consensus Uncharacterized conserved protein, conta 85.21
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 84.68
TIGR02604367 Piru_Ver_Nterm putative membrane-bound dehydrogena 84.6
PLN00033398 photosystem II stability/assembly factor; Provisio 84.45
PF15390671 DUF4613: Domain of unknown function (DUF4613) 84.28
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 84.09
TIGR03606454 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH 83.88
PF0767639 PD40: WD40-like Beta Propeller Repeat; InterPro: I 83.6
PF05694461 SBP56: 56kDa selenium binding protein (SBP56); Int 83.55
PRK13684334 Ycf48-like protein; Provisional 83.54
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 83.53
PF1031343 DUF2415: Uncharacterised protein domain (DUF2415); 82.04
PF13449326 Phytase-like: Esterase-like activity of phytase 81.12
PF14583386 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C 80.83
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-38  Score=329.89  Aligned_cols=280  Identities=19%  Similarity=0.274  Sum_probs=215.2

Q ss_pred             cccccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-
Q 003087            7 PRKTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-   84 (849)
Q Consensus         7 ~~~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-   84 (849)
                      |.+-+.|.+++|||||+.||+|| |.++++||....  .|..++.. |...|.+|+|||||+.||||+.||+|++||.. 
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~Kg-H~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt  188 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKG-HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT  188 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecC-CccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence            45668999999999999999998 568999998753  44444432 24567899999999999999999999999985 


Q ss_pred             CccceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceE
Q 003087           85 GEEITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVI  164 (849)
Q Consensus        85 g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~  164 (849)
                      |+++.+-.++|   ...|.+++|.|-.....+.  .|++.+.||++++||+..+.+...           +. +|+..|+
T Consensus       189 g~~~g~~l~gH---~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~-----------ls-gHT~~VT  251 (480)
T KOG0271|consen  189 GQQIGRALRGH---KKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRT-----------LS-GHTASVT  251 (480)
T ss_pred             CCcccccccCc---ccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEE-----------ec-cCccceE
Confidence            76655554444   3579999999855443332  578889999999999987766432           34 5577899


Q ss_pred             EEEEcCCCceEEEEecCCCCccccCCCCCCceeeEEEecCC---------------------------------------
Q 003087          165 CTDYHPELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHN---------------------------------------  205 (849)
Q Consensus       165 svafsPdg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~---------------------------------------  205 (849)
                      ||.|--+| ++++||-|+|             |++|+...+                                       
T Consensus       252 CvrwGG~g-liySgS~Drt-------------Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  252 CVRWGGEG-LIYSGSQDRT-------------IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEEEcCCc-eEEecCCCce-------------EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            99999888 7889999986             555554331                                       


Q ss_pred             ----------------cCcccceeccccce-e-----------eccCCCccccccceEEEccCCCEEEEEeCCCcEEEEe
Q 003087          206 ----------------LELEQLYTTQIEGL-Y-----------CEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFE  257 (849)
Q Consensus       206 ----------------~~~~~l~~~~~~~~-~-----------~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd  257 (849)
                                      ...+.+.++.-+.+ |           .+-.|  |+.-|+.|+|||||+++||+|+|.+|+||+
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG--HQALVNHVSFSPDGRYIASASFDKSVKLWD  395 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc--hhhheeeEEECCCccEEEEeecccceeeee
Confidence                            00011221111111 1           12235  999999999999999999999999999999


Q ss_pred             cCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCEE-EEEEeCCcEEEEEecCCccccccCCCCCCeEE
Q 003087          258 MDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNIL-ILARKSSIITMIDVLSGLKVKETDPKLRGHVF  336 (849)
Q Consensus       258 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~l-a~a~~dgti~lwdl~~~~~l~~~~~~~~g~~~  336 (849)
                      ..+++. +..|.                  +|.+.|+.|+|+.|.+| ++++.|.|++||++.+.+ +.-+.|+|.+++|
T Consensus       396 g~tGk~-lasfR------------------GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK-l~~DLpGh~DEVf  455 (480)
T KOG0271|consen  396 GRTGKF-LASFR------------------GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK-LKQDLPGHADEVF  455 (480)
T ss_pred             CCCcch-hhhhh------------------hccceeEEEEeccCccEEEEcCCCceEEEEEeeeee-ecccCCCCCceEE
Confidence            999876 56665                  46678999999999985 578999999999999866 6567999999999


Q ss_pred             EEEecc
Q 003087          337 LLESKS  342 (849)
Q Consensus       337 ~Le~~~  342 (849)
                      .++..+
T Consensus       456 ~vDwsp  461 (480)
T KOG0271|consen  456 AVDWSP  461 (480)
T ss_pred             EEEecC
Confidence            999976

>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes [] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4256 consensus Kinetochore component [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1797 consensus Uncharacterized conserved protein (Neuroblastoma-amplified protein) [Function unknown] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG1797 consensus Uncharacterized conserved protein (Neuroblastoma-amplified protein) [Function unknown] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases Back     alignment and domain information
>KOG2377 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] Back     alignment and domain information
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10115 protease 2; Provisional Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family Back     alignment and domain information
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins Back     alignment and domain information
>PF13449 Phytase-like: Esterase-like activity of phytase Back     alignment and domain information
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query849
3k8p_D 709 Protein transport protein SEC39; intracellular tra 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3k8p_D Protein transport protein SEC39; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Saccharomyces cerevisiae} Length = 709 Back     alignment and structure
 Score = 63.8 bits (154), Expect = 2e-10
 Identities = 36/323 (11%), Positives = 85/323 (26%), Gaps = 46/323 (14%)

Query: 537 LAESGKIGALNLLFKRHPYSLASSVLQILAA-IPETVPVQTYTQLLP---GRSPPMTVAM 592
            A       +  L  R         L+IL    PE    +    L         P     
Sbjct: 13  FASRADTRNIKKLSTRLGSQSK--YLEILCVLWPELDDPKNLLFLRELEEEVQSPEGEET 70

Query: 593 REEDWV----ECDKMVRFIRRLPENHEISDQIRTEPIVRRSLRSLWPSINELTIWYKSRA 648
            +ED +    E D  +  +     +         E     S +    ++     W + R 
Sbjct: 71  TDEDVIVELLESDSSLIPLIES--DTTTRSNRYHELQEFISKKLNNKTLENFEEWLRERI 128

Query: 649 RDIDCYSGQLDNCLCLIDFACRKGLTELQQFHEDTSYLYQLIYSDETDGEISFSMSLTAW 708
              +    +      ++    +  +   +        L  L + ++    +     +  W
Sbjct: 129 LICNEMIPETPLLYSVLWETAKSKVLSTKFIGWVEGVLKPLDHLNK---RLHLIFKINEW 185

Query: 709 EQLSDYEKFNTMLKGVKEENVIKR----LRDKAIPFMQSRSHYLTSVGQEHVMVDQSSAD 764
           E++ D E F  +  GV++          + D+  P +     +                 
Sbjct: 186 EKMPDSELFKIIFDGVEDMQGYIGIADVIEDELAPTLSYGKKW----------------- 228

Query: 765 HEKDESFLVRWLKKIALENKVEICLLVIEEGCTEFQSKGFFRDESEAIDCALQCIYLCTA 824
                 F  +    +  +   ++ + +        +       + +     +  ++  + 
Sbjct: 229 ETFITEFFNKQQFSLKSDTNYQLFIKLYYSLEKGVKDNSEASRKLQ--SNVVDILFHNSE 286

Query: 825 --------TDKWSTMAAILSKLP 839
                   T K   + +ILS  P
Sbjct: 287 NLFNLSSLTHKLDELWSILSGFP 309
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query849
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 100.0
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 100.0
3ow8_A321 WD repeat-containing protein 61; structural genomi 100.0
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 100.0
3ow8_A321 WD repeat-containing protein 61; structural genomi 100.0
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 100.0
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 100.0
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 100.0
2pm7_B297 Protein transport protein SEC13, protein transport 100.0
4g56_B357 MGC81050 protein; protein arginine methyltransfera 100.0
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 99.98
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 99.98
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 99.97
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 99.97
4g56_B357 MGC81050 protein; protein arginine methyltransfera 99.97
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 99.97
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 99.97
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 99.97
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 99.97
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 99.97
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 99.97
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 99.97
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 99.97
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 99.97
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 99.97
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 99.97
2ymu_A577 WD-40 repeat protein; unknown function, two domain 99.97
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 99.97
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 99.97
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 99.97
4e54_B435 DNA damage-binding protein 2; beta barrel, double 99.97
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 99.97
2ymu_A577 WD-40 repeat protein; unknown function, two domain 99.96
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 99.96
3jrp_A379 Fusion protein of protein transport protein SEC13 99.96
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 99.96
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 99.96
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 99.96
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 99.96
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 99.96
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 99.96
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 99.96
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 99.96
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 99.95
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 99.95
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 99.95
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 99.95
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 99.95
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 99.95
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 99.95
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 99.95
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 99.95
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 99.95
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 99.95
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 99.95
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 99.95
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 99.95
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 99.95
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 99.95
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 99.95
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 99.95
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 99.95
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 99.94
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 99.94
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 99.94
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 99.94
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 99.94
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 99.94
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 99.94
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 99.94
3jro_A753 Fusion protein of protein transport protein SEC13 99.94
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 99.94
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 99.94
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 99.94
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 99.94
2pm7_B297 Protein transport protein SEC13, protein transport 99.94
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 99.94
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 99.94
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 99.94
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 99.94
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 99.93
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 99.93
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 99.93
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 99.93
2xyi_A430 Probable histone-binding protein CAF1; transcripti 99.93
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 99.93
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 99.93
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 99.93
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 99.92
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 99.92
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 99.92
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 99.92
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 99.92
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 99.92
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 99.92
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 99.92
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 99.92
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 99.92
4e54_B435 DNA damage-binding protein 2; beta barrel, double 99.92
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 99.92
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 99.92
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 99.92
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 99.91
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 99.91
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 99.9
3jrp_A379 Fusion protein of protein transport protein SEC13 99.9
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 99.9
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 99.9
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 99.89
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 99.89
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 99.89
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 99.89
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 99.89
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 99.89
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 99.89
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 99.88
2xyi_A430 Probable histone-binding protein CAF1; transcripti 99.88
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 99.88
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 99.88
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 99.88
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 99.87
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 99.87
3jro_A753 Fusion protein of protein transport protein SEC13 99.86
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 99.86
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 99.85
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 99.84
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 99.83
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 99.83
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 99.82
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 99.81
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 99.81
3o4h_A582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 99.8
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 99.8
1xfd_A723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 99.8
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 99.79
1xfd_A723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 99.79
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 99.78
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 99.77
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 99.76
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 99.76
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 99.76
1z68_A719 Fibroblast activation protein, alpha subunit; sepr 99.75
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 99.75
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 99.75
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 99.74
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 99.74
4a5s_A740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 99.74
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 99.74
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 99.73
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 99.73
1k32_A1045 Tricorn protease; protein degradation, substrate g 99.73
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 99.71
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 99.71
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 99.7
1z68_A719 Fibroblast activation protein, alpha subunit; sepr 99.69
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 99.69
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 99.69
1k32_A1045 Tricorn protease; protein degradation, substrate g 99.68
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 99.62
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 99.61
3o4h_A582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 99.6
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 99.59
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 99.59
3azo_A662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 99.58
4a5s_A740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 99.57
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 99.55
3azo_A662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 99.55
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 99.54
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 99.54
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 99.53
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 99.52
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 99.51
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 99.5
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 99.46
2xdw_A710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 99.45
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 99.44
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 99.42
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 99.37
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 99.36
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 99.35
2bkl_A695 Prolyl endopeptidase; mechanistic study, celiac sp 99.35
2xdw_A710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 99.33
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 99.32
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 99.3
1yr2_A741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 99.24
2bkl_A695 Prolyl endopeptidase; mechanistic study, celiac sp 99.23
1yr2_A741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 99.2
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 99.18
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 99.18
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 99.17
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 99.17
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 99.12
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 99.12
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 99.12
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 99.11
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 99.08
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 99.04
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 99.03
3iuj_A693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 99.01
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 99.01
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 98.98
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 98.94
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 98.93
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 98.93
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 98.9
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 98.88
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 98.87
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 98.86
2qe8_A343 Uncharacterized protein; structural genomics, join 98.82
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 98.82
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 98.77
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 98.7
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 98.68
3iuj_A693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 98.66
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 98.65
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 98.59
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 98.54
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 98.52
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 98.5
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 98.41
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 98.36
2ece_A462 462AA long hypothetical selenium-binding protein; 98.32
2ece_A462 462AA long hypothetical selenium-binding protein; 98.26
2qe8_A343 Uncharacterized protein; structural genomics, join 98.23
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 98.11
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 98.09
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 97.96
2fp8_A322 Strictosidine synthase; six bladed beta propeller 97.94
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 97.91
2xe4_A751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 97.81
2p4o_A306 Hypothetical protein; putative lactonase, structur 97.8
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 97.75
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 97.72
2xe4_A751 Oligopeptidase B; hydrolase-inhibitor complex, hyd 97.72
1yiq_A689 Quinohemoprotein alcohol dehydrogenase; electron t 97.72
1mda_H368 Methylamine dehydrogenase (heavy subunit); electro 97.69
1kb0_A677 Quinohemoprotein alcohol dehydrogenase; beta-prope 97.64
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 97.62
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 97.56
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 97.39
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 97.38
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 97.37
1kb0_A677 Quinohemoprotein alcohol dehydrogenase; beta-prope 97.35
1yiq_A689 Quinohemoprotein alcohol dehydrogenase; electron t 97.3
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 97.27
2fp8_A322 Strictosidine synthase; six bladed beta propeller 97.2
2ism_A352 Putative oxidoreductase; BL41XU spring-8, bladed b 97.18
3a9g_A354 Putative uncharacterized protein; PQQ dependent de 97.17
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 97.14
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 97.07
4a2l_A795 BT_4663, two-component system sensor histidine kin 97.07
4a2l_A795 BT_4663, two-component system sensor histidine kin 97.04
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 97.0
2g8s_A353 Glucose/sorbosone dehydrogenases; bladed beta-prop 96.99
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 96.9
3v9f_A781 Two-component system sensor histidine kinase/RESP 96.87
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 96.83
3v65_B386 Low-density lipoprotein receptor-related protein; 96.77
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 96.75
3v9f_A781 Two-component system sensor histidine kinase/RESP 96.62
3p5b_L400 Low density lipoprotein receptor variant; B-propel 96.61
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 96.6
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 96.6
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 96.46
3kya_A496 Putative phosphatase; structural genomics, joint c 96.36
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 96.34
2p4o_A306 Hypothetical protein; putative lactonase, structur 96.21
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 96.17
3pbp_A452 Nucleoporin NUP82; beta-propeller, mRNA export, mR 96.11
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 96.05
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 96.03
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 95.97
3sre_A355 PON1, serum paraoxonase; directed evolution, 6-bla 95.9
3v65_B386 Low-density lipoprotein receptor-related protein; 95.89
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 95.85
1kv9_A668 Type II quinohemoprotein alcohol dehydrogenase; el 95.8
3das_A347 Putative oxidoreductase; aldose sugar dehydrogenas 95.71
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 95.49
3pbp_A452 Nucleoporin NUP82; beta-propeller, mRNA export, mR 95.43
1kv9_A668 Type II quinohemoprotein alcohol dehydrogenase; el 95.29
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 95.26
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 95.24
2ism_A352 Putative oxidoreductase; BL41XU spring-8, bladed b 95.18
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 95.11
3p5b_L400 Low density lipoprotein receptor variant; B-propel 95.1
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 95.1
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 94.96
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 94.91
3a9g_A354 Putative uncharacterized protein; PQQ dependent de 94.84
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 94.83
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 94.83
3sre_A355 PON1, serum paraoxonase; directed evolution, 6-bla 94.74
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 94.62
3das_A347 Putative oxidoreductase; aldose sugar dehydrogenas 94.55
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 94.53
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 94.4
4a0p_A628 LRP6, LRP-6, low-density lipoprotein receptor-rela 94.31
1cru_A454 Protein (soluble quinoprotein glucose dehydrogena; 94.15
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 94.15
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 93.99
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 93.55
2g8s_A353 Glucose/sorbosone dehydrogenases; bladed beta-prop 93.51
1cru_A454 Protein (soluble quinoprotein glucose dehydrogena; 93.39
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 93.31
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 93.22
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 93.06
3kya_A496 Putative phosphatase; structural genomics, joint c 92.9
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 92.77
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 92.05
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 92.01
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 89.96
3s25_A302 Hypothetical 7-bladed beta-propeller-like protein; 89.85
3s94_A619 LRP-6, low-density lipoprotein receptor-related pr 89.68
3amr_A355 3-phytase; beta-propeller, phytate, MYO-inositol h 88.64
3amr_A355 3-phytase; beta-propeller, phytate, MYO-inositol h 87.88
3s94_A619 LRP-6, low-density lipoprotein receptor-related pr 87.15
4a0p_A628 LRP6, LRP-6, low-density lipoprotein receptor-rela 86.3
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 86.11
2wg3_C463 Hedgehog-interacting protein; lipoprotein, develop 81.77
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
Probab=100.00  E-value=5.7e-32  Score=292.89  Aligned_cols=261  Identities=11%  Similarity=0.127  Sum_probs=198.0

Q ss_pred             cccceEEEEEcCCCCeEEEEe-CCeEEEEecCCCCCcceeeeeecCCCCEEEEEECCCCCEEEEEeCCCcEEEEecC-Cc
Q 003087            9 KTKKQVSLFISPRGERVAVAA-VNQVTILQKDDDYQEPCGIFNCTGLGASIYGAWSESHDVLGIVDDTHTVYFFKAN-GE   86 (849)
Q Consensus         9 ~~~~v~slafSPdG~~LAsas-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~vafSPDG~~LAs~~~dgtIrlWd~~-g~   86 (849)
                      +.+.|.+|+|||||++||+|+ |++|+||+...+  .....+.. +...|.+++|+|||++||+|+.|++|++||+. |+
T Consensus        12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~   88 (304)
T 2ynn_A           12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE   88 (304)
T ss_dssp             ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            457899999999999999998 689999997642  33333332 35689999999999999999999999999996 66


Q ss_pred             cceecccccccccccEEEEEecCCcccccccceeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEE
Q 003087           87 EITRFTNKHLKVSLPIIGLIAQDETDVQRSCLCSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICT  166 (849)
Q Consensus        87 ~~~~l~~~~~~~~~~V~~l~fs~~~~~~~s~~~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~sv  166 (849)
                      .+..+..|.    ..|.+++|+|++.       .+++++.||+|++||+.++....          ..+. +|...|.++
T Consensus        89 ~~~~~~~h~----~~v~~~~~~~~~~-------~l~sgs~D~~v~lWd~~~~~~~~----------~~~~-~h~~~v~~v  146 (304)
T 2ynn_A           89 KVVDFEAHP----DYIRSIAVHPTKP-------YVLSGSDDLTVKLWNWENNWALE----------QTFE-GHEHFVMCV  146 (304)
T ss_dssp             EEEEEECCS----SCEEEEEECSSSS-------EEEEEETTSCEEEEEGGGTTEEE----------EEEC-CCCSCEEEE
T ss_pred             EEEEEeCCC----CcEEEEEEcCCCC-------EEEEECCCCeEEEEECCCCcchh----------hhhc-ccCCcEEEE
Confidence            666665443    5799999998654       36677999999999998653211          1233 446679999


Q ss_pred             EEcC-CCceEEEEecCCCCccccCCCCCCceeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEcc--CCCE
Q 003087          167 DYHP-ELSLLSVVSNTDTSSLTSSGNSGPCCISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISP--QGKF  243 (849)
Q Consensus       167 afsP-dg~lLas~g~d~t~~~~~~~~~G~~~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSP--DG~~  243 (849)
                      +|+| ++.+||+|+.|++             |++|++........+           ..+  |...|..++|+|  |+++
T Consensus       147 ~~~p~~~~~l~sgs~D~~-------------v~iwd~~~~~~~~~~-----------~~~--~~~~v~~~~~~~~~~~~~  200 (304)
T 2ynn_A          147 AFNPKDPSTFASGCLDRT-------------VKVWSLGQSTPNFTL-----------TTG--QERGVNYVDYYPLPDKPY  200 (304)
T ss_dssp             EECTTCTTEEEEEETTSE-------------EEEEETTCSSCSEEE-----------ECC--CTTCEEEEEECCSTTCCE
T ss_pred             EECCCCCCEEEEEeCCCe-------------EEEEECCCCCcccee-----------ccC--CcCcEEEEEEEEcCCCCE
Confidence            9999 6899999999973             899998654211111           122  556888999987  8899


Q ss_pred             EEEEeCCCcEEEEecCCCcccccccccccccccccccccCCCCCCCCCCcEEEEEecCCE-EEEEEeCCcEEEEEecCCc
Q 003087          244 VATSDTNGCLYIFEMDKDNFSLSKFACGERFDLQVADSLFDGRTKPISDITDFAWWSDNI-LILARKSSIITMIDVLSGL  322 (849)
Q Consensus       244 LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~vaws~D~~-la~a~~dgti~lwdl~~~~  322 (849)
                      |||++.||+|+|||+.++++ +..+.                  .|...|..++|+|++. +++++.||+|+|||+.+++
T Consensus       201 l~s~s~D~~i~iWd~~~~~~-~~~~~------------------~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          201 MITASDDLTIKIWDYQTKSC-VATLE------------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEEE------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEcCCCeEEEEeCCCCcc-ceeeC------------------CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            99999999999999998754 33332                  3556799999999975 7889999999999999887


Q ss_pred             cccccCCCCCCeEEEEEe
Q 003087          323 KVKETDPKLRGHVFLLES  340 (849)
Q Consensus       323 ~l~~~~~~~~g~~~~Le~  340 (849)
                      .+.. ...+.+.+..+..
T Consensus       262 ~~~~-~~~~~~~~~~~~~  278 (304)
T 2ynn_A          262 VEKT-LNVGLERSWCIAT  278 (304)
T ss_dssp             EEEE-ECCSSSSEEEEEE
T ss_pred             eeee-ccCCCccEEEEEE
Confidence            4331 2234455555553
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} Back     alignment and structure
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A Back     alignment and structure
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query849
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 99.97
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 99.97
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.97
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.97
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.97
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.97
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.97
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.96
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.95
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.94
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.94
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.92
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 99.91
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.91
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.91
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.91
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.9
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 99.9
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.9
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.9
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.89
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.89
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.89
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.86
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.85
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.85
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.83
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.83
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.82
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.81
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.8
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.78
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.74
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.74
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.71
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.67
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.66
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.62
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.6
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.59
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.58
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.55
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.53
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.47
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.44
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.35
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.31
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.27
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 99.11
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 98.99
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 98.96
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 98.91
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 98.81
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.81
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 98.8
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 98.73
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 98.56
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.53
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 98.42
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 98.4
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 98.35
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 98.3
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 98.29
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 98.06
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 98.0
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 97.99
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 97.87
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 97.82
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 97.76
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 97.63
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 95.63
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 94.52
d1v04a_340 Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory 89.07
d1crua_450 Soluble quinoprotein glucose dehydrogenase {Acinet 87.88
d1crua_450 Soluble quinoprotein glucose dehydrogenase {Acinet 87.37
d1fwxa2459 Nitrous oxide reductase, N-terminal domain {Paraco 86.85
d1tl2a_235 Tachylectin-2 {Japanese horseshoe crab (Tachypleus 84.24
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 83.74
d1fwxa2459 Nitrous oxide reductase, N-terminal domain {Paraco 83.25
d1qfma1430 Prolyl oligopeptidase, N-terminal domain {Pig (Sus 82.11
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.2e-30  Score=280.91  Aligned_cols=266  Identities=9%  Similarity=-0.007  Sum_probs=179.3

Q ss_pred             cccceEEEEEcCCCCeEEEEeCCeEEEEecCCCCCcceeeee-----------------ecCCCCEEEEEECCCCCEEEE
Q 003087            9 KTKKQVSLFISPRGERVAVAAVNQVTILQKDDDYQEPCGIFN-----------------CTGLGASIYGAWSESHDVLGI   71 (849)
Q Consensus         9 ~~~~v~slafSPdG~~LAsas~~~i~iw~~~~~~~~~~~~~~-----------------~~~~~~v~~vafSPDG~~LAs   71 (849)
                      +.+.|.+|+|||||++||+|+|++|+||+..++  .....+.                 ..+...|++|+|||||++||+
T Consensus        61 H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEECBSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCeEEEEEeccc--ceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            447899999999999999999999999997653  2222211                 112456899999999999999


Q ss_pred             EeCCCcEEEEecC-CccceecccccccccccEEEEEecCCcccc----------------------------------cc
Q 003087           72 VDDTHTVYFFKAN-GEEITRFTNKHLKVSLPIIGLIAQDETDVQ----------------------------------RS  116 (849)
Q Consensus        72 ~~~dgtIrlWd~~-g~~~~~l~~~~~~~~~~V~~l~fs~~~~~~----------------------------------~s  116 (849)
                      |+.||+|++||.. ++.+.....+.    ..|.++.|++++...                                  ..
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  214 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHE----QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP  214 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             ccccccccccccccccccccccccc----ccccccccccccccccccccceeeeeeeccccccccccccccccccccccC
Confidence            9999999999987 55544443332    456666665422100                                  01


Q ss_pred             cc-eeEEEEeCCCcEEEEEecCCCCcccccccccCCcceeccccCCceEEEEEcCCCceEEEEecCCCCccccCCCCCCc
Q 003087          117 CL-CSFTVFTSDGFLHQIEISQDPSASISSASASSSGLTLRRQFPQNVICTDYHPELSLLSVVSNTDTSSLTSSGNSGPC  195 (849)
Q Consensus       117 ~~-~~~~~~s~Dg~v~lw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~svafsPdg~lLas~g~d~t~~~~~~~~~G~~  195 (849)
                      .+ ..|++++.||.|++|++.++.....+.    ....... .|...|.+++|+|+|++||+++.|+             
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~d~-------------  276 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLD----SENESGT-GHKDSVYSVVFTRDGQSVVSGSLDR-------------  276 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC----------C-CCSSCEEEEEECTTSSEEEEEETTS-------------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeec----ccccccc-CCCCCEEEEEECCCCCEEEEEECCC-------------
Confidence            11 246667788888888877655432221    0011122 3456799999999999999999886             


Q ss_pred             eeeEEEecCCcCcccceeccccceeeccCCCccccccceEEEccCCCEEEEEeCCCcEEEEecCCCcccccccccccccc
Q 003087          196 CISLWRRCHNLELEQLYTTQIEGLYCEPKGHEVQLAHPKVLISPQGKFVATSDTNGCLYIFEMDKDNFSLSKFACGERFD  275 (849)
Q Consensus       196 ~I~lW~~~~~~~~~~l~~~~~~~~~~~~~g~~h~~~V~~vafSPDG~~LAs~s~Dgtv~LWd~~~~~~~l~~~~~~~~~~  275 (849)
                      .|++|++.......................  |...|.+++|||||++||+++.||+|++||+.++++ +..+.      
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-~~~l~------  347 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-LLMLQ------  347 (388)
T ss_dssp             EEEEEEC---------------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE-EEEEE------
T ss_pred             cEEEEeccCCccccccccccccceeeeccc--ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE-EEEEe------
Confidence            389999876422111111110011112223  778999999999999999999999999999998765 44443      


Q ss_pred             cccccccCCCCCCCCCCcEEEE------EecCCE-EEEEEeCCcEEEEEec
Q 003087          276 LQVADSLFDGRTKPISDITDFA------WWSDNI-LILARKSSIITMIDVL  319 (849)
Q Consensus       276 ~~~~~~l~~~~~~~~~~v~~va------ws~D~~-la~a~~dgti~lwdl~  319 (849)
                                  +|...|.+++      |+||+. ||+|+.||+|+||+++
T Consensus       348 ------------~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         348 ------------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             ------------CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ------------CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                        2446677776      456775 6789999999999985
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure