Citrus Sinensis ID: 003109

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------
Protein Sequence
MLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFGPK
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccEEEEEEcccEEEEEcccccccccEEEEccEEEEcccEEEEEEEEccccccccEEEEEEccccccEEccccccccccccccEEEEEEEcccccccccccEEEEccccccccccEEEccHHHHHHHHHHHHHHccccccHHHHHccHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccHHHHHccccccHHHHHHHHcccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccHHHHHcHccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHccHHHHHHHHHHHHcccccHHHccccccEEEEEEEcccHHHHHHHHHcHHHHHHHHHHccccccccccEEEEEEccEEEEEEccEEEEEcccccccccEEEEEEEEEEEccccEEEEEEEccccccccEEEEEEcccEEEEEcccccccccccccccEEEEEEccccccccccEEEEEEcccccccccEEEEcHHHHHHHHHHHHHHcccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHcccHcccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccEEcccccccccccccHEHEHcccccHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEEccccHHHHHHHHHHHcccccccccccHcHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEcEcccccc
Coil and Loop (DISEMBL)
mlihghgnqsnnptanVDIVNLLTALARAQgktedrsiscssvpDREQLLMILSKinslplpadLAAKLhnfgslnrktpvhtstdvqnrlnentsspsTMDLLAVLSStltapspdtlaahsqrsshssdsektkstcpeqatpnflkrttmdfpsvggersstsyqspvedsdgqnqetrvnlplqlfssspeddsppklsssrkyfssdssnpieerspssspvvqtffpmqstsetvkseklsigrevnanvegnrsrgsimplelfrgsnkaadncsfqsfpyqagytsssgsdhspsslnsdaqdcTGRIIFKLfdkdpsqfpgtLRKEIYNWLsnspsemesyirpgcvilslyvsmpyatWEQLEGNLLQRINSLvqdsdsdfwRNARFLVHtgkqlashkdgnirvckswrtwsspelisvsplavvggqelsfklrgrnltnlgtkihctfmggyasqevtsstcqgsiYDEIILAGlkiqdtspsvlGRFFIEvengfkgnsfpvIIADATICKELSLLESEFGAEAKVCDVIsehqaheygrprsrEEVLHFLNELGWLFQrkrassivkgsdyslsrFKFLLVFSVDRGCCALVKAILDILVEGnlsmdglsRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYsltssndtpqkyifppnlagpggitplhlaactsdsdDIIDAltndpqeigpsswnsildasghspysyaLMKNNHAYNKLVARKLadrrngqvtipVGVEIEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNkrvrgsqgllnrpyiHSMLAIAAVCVCVCLFlrgspdiglvapfkwenldfgpk
Flexible Loop (DISEMBL)
mlihghgnqsnnptaNVDIVNLLTALARAqgktedrsiscssvPDREQLLMILSKINSLPLPADLAAKLHNFGSlnrktpvhtstdvqnrlnentsspsTMDLLAVLSSTLTAPSPDTLAAHsqrsshssdsektkstcpeqatpnflkrttmdfpsvggersstsyqspvedsdgqnqETRVNLPLQlfssspeddsppklSSSRKYFSsdssnpieerspssspvvQTFFPMQstsetvkseklsigrevnanvegnrsrgsiMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLfdkdpsqfpgTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVhtgkqlashkdgnirVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAheygrprsREEVLHFLNELGWLFQRKRASsivkgsdyslSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSsqfkqrgkSCTKCAVAAAklnkrvrgsqgLLNRPYIHSMLAIAAVCVCVCLFLRGSpdiglvapfkwenldfgpk
Low Complexity Region (SEG)
MLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHsqrsshssdsektkstCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLsssrkyfssdssNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTsssgsdhspsslnsDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFGPK
Disordered region (IsUnstruct)
****************VDIVNLLTALAR*******************QLLMILSKINSLPLPADLAAKLHNF***********************************************************************************************************************************************************************************************************************************************CTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGR**SREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALT**********WNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQS******************KSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLD****
Disordered Region (DISOPRED)
***************NVDIVNLLTAL******************************************************************************************************************************************************************************************************************************************************************************************************FDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQ***YGRPRSREEVLHFLNELGWLFQR************SLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPV***********************************A******RGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFGP*
Disordered Region (DISEMBL)
*********SNNPTANVDIVNLLTALAR*************SVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPS*************************EQATPNFLKRTTMDFP***********************ETRVNLPLQLFS***********************************VVQTFFPMQ**********LSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAG****************DAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSG*********************KCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFGPK
Disordered Region (DISPRO)
*****HGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNF*************************PSTMDLLAVLSSTLTAPSPDTLAA*********************************************************QETRVNLPL*LF*************************************************************************SI*********************************************DCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAK**DVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQS*******HGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDF***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFGPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	847	2.2.26 [Sep-21-2011]
Q8RY95	1035	Squamosa promoter-binding	yes	no	0.963	0.788	0.574	0.0
Q700C2	988	Squamosa promoter-binding	no	no	0.961	0.823	0.534	0.0
Q6Z8M8	1140	Squamosa promoter-binding	yes	no	0.972	0.722	0.479	0.0
A2YX04	1140	Squamosa promoter-binding	N/A	no	0.972	0.722	0.479	0.0
Q9SMX9	881	Squamosa promoter-binding	no	no	0.597	0.574	0.333	2e-80
Q9LGU7	862	Squamosa promoter-binding	no	no	0.615	0.604	0.317	1e-79
Q75LH6	969	Squamosa promoter-binding	no	no	0.613	0.536	0.329	2e-79
Q9S7P5	927	Squamosa promoter-binding	no	no	0.595	0.543	0.342	3e-79
Q8S9G8	801	Squamosa promoter-binding	no	no	0.257	0.272	0.299	4e-28
Q6I576	842	Squamosa promoter-binding	no	no	0.421	0.423	0.248	4e-24

>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/848 (57%), Positives = 621/848 (73%), Gaps = 32/848 (3%)

Query: 6    HGNQSNNPTANVDIVNLLTALARAQGKTEDRS-ISCSSVPDREQLLMILSKINSLPLPAD 64
            H   +N   AN+D++ LLTALA AQGK   +  +   +VPDREQLL IL+KIN+LPLP D
Sbjct: 210  HDTTNNTANANMDLMALLTALACAQGKNAVKPPVGSPAVPDREQLLQILNKINALPLPMD 269

Query: 65   LAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQ 124
            L +KL+N GSL RK   H + + QN +N   +SPSTMDLLAVLS+TL + SPD LA  SQ
Sbjct: 270  LVSKLNNIGSLARKNMDHPTVNPQNDMN--GASPSTMDLLAVLSTTLGSSSPDALAILSQ 327

Query: 125  RSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVN 184
                + DSEKTK +  E      L++ T  F SVGGERSS+S QSP +DSD + Q+TR +
Sbjct: 328  GGFGNKDSEKTKLSSYENGVTTNLEKRTFGFSSVGGERSSSSNQSPSQDSDSRGQDTRSS 387

Query: 185  LPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSE 244
            L LQLF+SSPED+S P ++SSRKY+SS SSNP+E+RSPSSSPV+Q  FP+Q++ ET++S+
Sbjct: 388  LSLQLFTSSPEDESRPTVASSRKYYSSASSNPVEDRSPSSSPVMQELFPLQASPETMRSK 447

Query: 245  KLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSS 304
                      N + +  R   +PLELF  SN+ A + +F+ F  Q+GY +SSGSD+SP S
Sbjct: 448  ----------NHKNSSPRTGCLPLELFGASNRGAADPNFKGFGQQSGY-ASSGSDYSPPS 496

Query: 305  LNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSM 364
            LNSDAQD TG+I+FKL DKDPSQ PGTLR EIYNWLSN PSEMESYIRPGCV+LS+YV+M
Sbjct: 497  LNSDAQDRTGKIVFKLLDKDPSQLPGTLRSEIYNWLSNIPSEMESYIRPGCVVLSVYVAM 556

Query: 365  PYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSS 424
              A WEQLE  LLQR+  L+Q+S SDFWRNARF+V+TG+QLASHK+G +R  KSWRTW+S
Sbjct: 557  SPAAWEQLEQKLLQRLGVLLQNSPSDFWRNARFIVNTGRQLASHKNGKVRCSKSWRTWNS 616

Query: 425  PELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEII 484
            PELISVSP+AVV G+E S  +RGR+LTN G  I CT MG Y + EVT + C+ +I+DE+ 
Sbjct: 617  PELISVSPVAVVAGEETSLVVRGRSLTNDGISIRCTHMGSYMAMEVTRAVCRQTIFDELN 676

Query: 485  LAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVI 544
            +   K+Q+  P  LGR FIEVENGF+G+SFP+IIA+A+ICKEL+ L  EF  +++    +
Sbjct: 677  VNSFKVQNVHPGFLGRCFIEVENGFRGDSFPLIIANASICKELNRLGEEFHPKSQ---DM 733

Query: 545  SEHQAHEYGR-PRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGC 603
            +E QA    R P SREEVL FLNELGWLFQ+ + S + + SD+SL+RFKFLLV SV+R  
Sbjct: 734  TEEQAQSSNRGPTSREEVLCFLNELGWLFQKNQTSELREQSDFSLARFKFLLVCSVERDY 793

Query: 604  CALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHY-----SL 658
            CAL++ +LD+LVE NL  D L+RE+L+ML EIQLLNRAVK K  +MV+LLIHY     +L
Sbjct: 794  CALIRTLLDMLVERNLVNDELNREALDMLAEIQLLNRAVKRKSTKMVELLIHYLVNPLTL 853

Query: 659  TSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDAS 718
            +SS    +K++F PN+ GPGGITPLHLAACTS SDD+ID LTNDPQEIG SSWN++ DA+
Sbjct: 854  SSS----RKFVFLPNITGPGGITPLHLAACTSGSDDMIDLLTNDPQEIGLSSWNTLRDAT 909

Query: 719  GHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVE-IEQSGLAKEQVHGLSSQFKQ 777
            G +PYSYA ++NNH YN LVARKLAD+RN QV++ +  E ++Q+GL+K     LS +  +
Sbjct: 910  GQTPYSYAAIRNNHNYNSLVARKLADKRNKQVSLNIEHEVVDQTGLSKR----LSLEMNK 965

Query: 778  RGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPF 837
               SC  CA  A K  +RV GSQ L   P IHSMLA+A VCVCVC+F+   P +   + F
Sbjct: 966  SSSSCASCATVALKYQRRVSGSQRLFPTPIIHSMLAVATVCVCVCVFMHAFPIVRQGSHF 1025

Query: 838  KWENLDFG 845
             W  LD+G
Sbjct: 1026 SWGGLDYG 1033

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/848 (53%), Positives = 598/848 (70%), Gaps = 34/848 (4%)

Query: 3   IHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLP 62
           +    N SNN   N+D++ LLTAL  AQG+ E  +     VP REQLL IL+KI +LPLP
Sbjct: 168 LENRDNTSNN--TNMDVMALLTALVCAQGRNEATTNGSPGVPQREQLLQILNKIKALPLP 225

Query: 63  ADLAAKLHNFGSLNRKTPVHTS-TDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAA 121
            +L +KL+N G L RK P   S  + QN +N   SSPSTMDLLA LS++L + +P+ +A 
Sbjct: 226 MNLTSKLNNIGILARKNPEQPSPMNPQNSMN-GASSPSTMDLLAALSASLGSSAPEAIAF 284

Query: 122 HSQRSSHSSDS-EKTKSTCPEQATPNFLKRTTMDFPSVGG-ERSSTSYQSPVEDSDGQNQ 179
            SQ    + +S ++TK T  + +    L++ T++FPS GG ER+S++  SP + SD + Q
Sbjct: 285 LSQGGFGNKESNDRTKLTSSDHSATTSLEKKTLEFPSFGGGERTSSTNHSPSQYSDSRGQ 344

Query: 180 ETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSE 239
           +TR +L LQLF+SSPE++S PK++SS KY+SS SSNP+E+RSPSSSPV+Q  FP+ ++ E
Sbjct: 345 DTRSSLSLQLFTSSPEEESRPKVASSTKYYSSASSNPVEDRSPSSSPVMQELFPLHTSPE 404

Query: 240 TVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAAD-NCSFQSFPYQAGYTSSSGS 298
           T         R  N        R S +PLELF  SN+ A  N ++    +Q+GY +SSGS
Sbjct: 405 T--------RRYNNYKDTSTSPRTSCLPLELFGASNRGATANPNYNVLRHQSGY-ASSGS 455

Query: 299 DHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVIL 358
           D+SP SLNS+AQ+ TG+I FKLF+KDPSQ P TLR EI+ WLS+ PS+MES+IRPGCVIL
Sbjct: 456 DYSPPSLNSNAQERTGKISFKLFEKDPSQLPNTLRTEIFRWLSSFPSDMESFIRPGCVIL 515

Query: 359 SLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKS 418
           S+YV+M  + WEQLE NLLQR+ SLVQDS+  FW N+RFLV+ G+QLASHK G IR+ KS
Sbjct: 516 SVYVAMSASAWEQLEENLLQRVRSLVQDSE--FWSNSRFLVNAGRQLASHKHGRIRLSKS 573

Query: 419 WRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGS 478
           WRT + PELI+VSPLAVV G+E +  +RGRNLTN G ++ C  MG YAS EVT    + +
Sbjct: 574 WRTLNLPELITVSPLAVVAGEETALIVRGRNLTNDGMRLRCAHMGNYASMEVTGREHRLT 633

Query: 479 IYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEA 538
             DE+ ++  ++Q  S   LGR FIE+ENG +G++FP+IIA+ATICKEL+ LE EF  + 
Sbjct: 634 KVDELNVSSFQVQSASSVSLGRCFIELENGLRGDNFPLIIANATICKELNRLEEEFHPK- 692

Query: 539 KVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFS 598
              DVI E Q     RPRSREEVL FLNELGWLFQRK  S I    D+SL RFKFLLV S
Sbjct: 693 ---DVI-EEQIQNLDRPRSREEVLCFLNELGWLFQRKWTSDIHGEPDFSLPRFKFLLVCS 748

Query: 599 VDRGCCALVKAILDILVEGNLSMDG-LSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYS 657
           V+R  C+L++ +LD++VE NL  DG L++ESL+ML +IQLLNRA+K +  +M + LIHYS
Sbjct: 749 VERDYCSLIRTVLDMMVERNLGKDGLLNKESLDMLADIQLLNRAIKRRNTKMAETLIHYS 808

Query: 658 LTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA 717
           +   N + + +IF P++AGPG ITPLHLAA TS SDD+IDALTNDPQEIG S WN+++DA
Sbjct: 809 V---NPSTRNFIFLPSIAGPGDITPLHLAASTSSSDDMIDALTNDPQEIGLSCWNTLVDA 865

Query: 718 SGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQ 777
           +G +P+SYA M++NH+YN LVARKLAD+RNGQ+++ +   I+Q GL+K     LSS+ K 
Sbjct: 866 TGQTPFSYAAMRDNHSYNTLVARKLADKRNGQISLNIENGIDQIGLSKR----LSSELK- 920

Query: 778 RGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPF 837
             +SC  CA  A K  ++V GS+ L   P IHSMLA+A VCVCVC+F+   P +   + F
Sbjct: 921 --RSCNTCASVALKYQRKVSGSRRLFPTPIIHSMLAVATVCVCVCVFMHAFPMVRQGSHF 978

Query: 838 KWENLDFG 845
            W  LD+G
Sbjct: 979 SWGGLDYG 986

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z8M8|SPL15_ORYSJ Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/880 (47%), Positives = 562/880 (63%), Gaps = 56/880 (6%)

Query: 7    GNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSL------- 59
            GNQ N      DIVNL+T +AR QG    +  S   +PD++ L+ I+SKINS+       
Sbjct: 274  GNQENAANRTQDIVNLITVIARLQGSNVGKLPSIPPIPDKDNLVQIISKINSINNGNSAS 333

Query: 60   PLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLN----------------ENTSSPSTMDL 103
              P   A  L+   S  + +   T+   + + N                +  + PSTMDL
Sbjct: 334  KSPPSEAVDLNASHSQQQDSVQRTTNGFEKQTNGLDKQTNGFDKQADGFDKQAVPSTMDL 393

Query: 104  LAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQA-TPNFLKRTTMDFPSV---- 158
            LAVLS+ L   +PD+  + SQ SS SS + K+KS   E A   N  +++   F +     
Sbjct: 394  LAVLSTALATSNPDSNTSQSQGSSDSSGNNKSKSQSTEPANVVNSHEKSIRVFSATRKND 453

Query: 159  GGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIE 218
              ERS   Y+ P       +QET   L L+LF S+ E+D P K+ ++ KY SS+SSNP++
Sbjct: 454  ALERSPEMYKQP-------DQETPPYLSLRLFGST-EEDVPCKMDTANKYLSSESSNPLD 505

Query: 219  ERSPSSSP-VVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRG-SIMPLELFRGSNK 276
            ERSPSSSP V   FFP++S  E  +      G ++ A VE + SR     PLELF+ S +
Sbjct: 506  ERSPSSSPPVTHKFFPIRSVDEDARIA--DYGEDI-ATVEVSTSRAWRAPPLELFKDSER 562

Query: 277  AADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEI 336
              +N S  +  YQ+ YTS+S SDHSPS+ NSD QD TGRIIFKLF K+PS  PG LR EI
Sbjct: 563  PIENGSPPNPAYQSCYTSTSCSDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEI 622

Query: 337  YNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNAR 396
             NWL +SP+EME YIRPGC++LS+Y+SMP   W++LE NLLQR+N+LVQ SD DFWR  R
Sbjct: 623  VNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGR 682

Query: 397  FLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTK 456
            FLV T  QL S+KDG  R+ KSWRTW++PEL  VSP+AVVGG++ S  L+GRNLT  GT+
Sbjct: 683  FLVRTDAQLVSYKDGATRLSKSWRTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPGTQ 742

Query: 457  IHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPV 516
            IHCT  G Y S+EV  S   G+IYD+  +    +      +LGR+FIEVEN F+GNSFPV
Sbjct: 743  IHCTSTGKYISKEVLCSAYPGTIYDDSGVETFDLPGEPHLILGRYFIEVENRFRGNSFPV 802

Query: 517  IIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKR 576
            IIA++++C+EL  LE+E    ++  D  S+ QAH+  R + ++EVLHFLNELGWLFQ+  
Sbjct: 803  IIANSSVCQELRSLEAELEG-SQFVDGSSDDQAHDARRLKPKDEVLHFLNELGWLFQKAA 861

Query: 577  ASSIVKGSD--------YSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRES 628
            AS+  + SD        +S +RF++LL+FS +R  C+L K +L+IL + +L+ D LS+E+
Sbjct: 862  ASTSAEKSDSSGLDLMYFSTARFRYLLLFSSERDWCSLTKTLLEILAKRSLASDELSQET 921

Query: 629  LEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAAC 688
            LEML EI LLNRAVK K   M  LL+ + +   +D+ + Y F PN+AGPGG+TPLHLAA 
Sbjct: 922  LEMLSEIHLLNRAVKRKSSHMARLLVQFVVVCPDDS-KLYPFLPNVAGPGGLTPLHLAAS 980

Query: 689  TSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNG 748
              D+ DI+DALT+DPQ+IG S W+S LD  G SP +YA ++NN+AYN+LVA+KL DR+N 
Sbjct: 981  IEDAVDIVDALTDDPQQIGLSCWHSALDDDGQSPETYAKLRNNNAYNELVAQKLVDRKNN 1040

Query: 749  QVTIPVG---VEIEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNR 805
            QVTI VG   + ++QSG   E+        + R  SC +CA+  A L +R   S+GLL R
Sbjct: 1041 QVTIMVGKEEIHMDQSGNVGEKNKSAIQALQIR--SCNQCAILDAGLLRRPMHSRGLLAR 1098

Query: 806  PYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFG 845
            PYIHSMLAIAAVCVCVC+F+R          FKWE LDFG
Sbjct: 1099 PYIHSMLAIAAVCVCVCVFMRALLRFNSGRSFKWERLDFG 1138

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/880 (47%), Positives = 562/880 (63%), Gaps = 56/880 (6%)

Query: 7    GNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSL------- 59
            GNQ N      DIVNL+T +AR QG    +  S   +PD++ L+ I+SKINS+       
Sbjct: 274  GNQENAANRTQDIVNLITVIARLQGSNVGKLPSIPPIPDKDNLVQIISKINSINNGNSAS 333

Query: 60   PLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLN----------------ENTSSPSTMDL 103
              P   A  L+   S  + +   T+   + + N                +  + PSTMDL
Sbjct: 334  KSPPSEAVDLNASHSQQQDSVQRTTNGFEKQTNGLDKQTNGFDKQADGFDKQAVPSTMDL 393

Query: 104  LAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQA-TPNFLKRTTMDFPSV---- 158
            LAVLS+ L   +PD+  + SQ SS SS + K+KS   E A   N  +++   F +     
Sbjct: 394  LAVLSTALATSNPDSNTSQSQGSSDSSGNNKSKSQSTEPANVVNSHEKSIRVFSATRKND 453

Query: 159  GGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIE 218
              ERS   Y+ P       +QET   L L+LF S+ E+D P K+ ++ KY SS+SSNP++
Sbjct: 454  ALERSPEMYKQP-------DQETPPYLSLRLFGST-EEDVPCKMDTANKYLSSESSNPLD 505

Query: 219  ERSPSSSP-VVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRG-SIMPLELFRGSNK 276
            ERSPSSSP V   FFP++S  E  +      G ++ A VE + SR     PLELF+ S +
Sbjct: 506  ERSPSSSPPVTHKFFPIRSVDEDARIA--DYGEDI-ATVEVSTSRAWRAPPLELFKDSER 562

Query: 277  AADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEI 336
              +N S  +  YQ+ YTS+S SDHSPS+ NSD QD TGRIIFKLF K+PS  PG LR EI
Sbjct: 563  PIENGSPPNPAYQSCYTSTSCSDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEI 622

Query: 337  YNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNAR 396
             NWL +SP+EME YIRPGC++LS+Y+SMP   W++LE NLLQR+N+LVQ SD DFWR  R
Sbjct: 623  VNWLKHSPNEMEGYIRPGCLVLSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGR 682

Query: 397  FLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTK 456
            FLV T  QL S+KDG  R+ KSWRTW++PEL  VSP+AVVGG++ S  L+GRNLT  GT+
Sbjct: 683  FLVRTDAQLVSYKDGATRLSKSWRTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPGTQ 742

Query: 457  IHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPV 516
            IHCT  G Y S+EV  S   G+IYD+  +    +      +LGR+FIEVEN F+GNSFPV
Sbjct: 743  IHCTSTGKYISKEVLCSAYPGTIYDDSGVETFDLPGEPHLILGRYFIEVENRFRGNSFPV 802

Query: 517  IIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKR 576
            IIA++++C+EL  LE+E    ++  D  S+ QAH+  R + ++EVLHFLNELGWLFQ+  
Sbjct: 803  IIANSSVCQELRSLEAELEG-SQFVDGSSDDQAHDARRLKPKDEVLHFLNELGWLFQKAA 861

Query: 577  ASSIVKGSD--------YSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRES 628
            AS+  + SD        +S +RF++LL+FS +R  C+L K +L+IL + +L+ D LS+E+
Sbjct: 862  ASTSAEKSDSSGLDLMYFSTARFRYLLLFSSERDWCSLTKTLLEILAKRSLASDELSQET 921

Query: 629  LEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAAC 688
            LEML EI LLNRAVK K   M  LL+ + +   +D+ + Y F PN+AGPGG+TPLHLAA 
Sbjct: 922  LEMLSEIHLLNRAVKRKSSHMARLLVQFVVVCPDDS-KLYPFLPNVAGPGGLTPLHLAAS 980

Query: 689  TSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNG 748
              D+ DI+DALT+DPQ+IG S W+S LD  G SP +YA ++NN+AYN+LVA+KL DR+N 
Sbjct: 981  IEDAVDIVDALTDDPQQIGLSCWHSALDDDGQSPETYAKLRNNNAYNELVAQKLVDRKNN 1040

Query: 749  QVTIPVG---VEIEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNR 805
            QVTI VG   + ++QSG   E+        + R  SC +CA+  A L +R   S+GLL R
Sbjct: 1041 QVTIMVGKEEIHMDQSGNVGEKNKSAIQALQIR--SCNQCAILDAGLLRRPMHSRGLLAR 1098

Query: 806  PYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFG 845
            PYIHSMLAIAAVCVCVC+F+R          FKWE LDFG
Sbjct: 1099 PYIHSMLAIAAVCVCVCVFMRALLRFNSGRSFKWERLDFG 1138

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2

 Score =  301 bits (771), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 185/554 (33%), Positives = 300/554 (54%), Gaps = 48/554 (8%)

Query: 309 AQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYAT 368
           AQ  TGRI+FKLF K+P++FP  LR +I +WLS+SP++MESYIRPGC++L++Y+      
Sbjct: 357 AQMRTGRIVFKLFGKEPNEFPIVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETA 416

Query: 369 WEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRV--CKSWRTWSSPE 426
           WE+L  +L   +  L+  SD   W      V    QLA   +G + V    S ++     
Sbjct: 417 WEELSDDLGFSLGKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSH 476

Query: 427 LISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVT--SSTCQGSIYDE-- 482
           +ISV PLA+   ++  F ++G NL   GT++ C+  G Y  QE T  S+T +   + +  
Sbjct: 477 IISVKPLAIAATEKAQFTVKGMNLRQRGTRLLCSVEGKYLIQETTHDSTTREDDDFKDNS 536

Query: 483 IILAGLKIQDTSPSVLGRFFIEVEN-GFKGNSFP-VIIADATICKELSLLESEFGAEAKV 540
            I+  +      P + GR F+E+E+ G   + FP +++ D  +C E+ +LE+        
Sbjct: 537 EIVECVNFSCDMPILSGRGFMEIEDQGLSSSFFPFLVVEDDDVCSEIRILETTL------ 590

Query: 541 CDVISEHQAHEYGRPRSREEVLHFLNELGWLFQR-KRASSIVKGSDYSLSRFKFLLVFSV 599
                     E+    S ++ + F++E+GWL  R K   S      + L RF++L+ FS+
Sbjct: 591 ----------EFTGTDSAKQAMDFIHEIGWLLHRSKLGESDPNPGVFPLIRFQWLIEFSM 640

Query: 600 DRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLT 659
           DR  CA+++ +L++  +G  ++   S  S   L E+ LL+RAV+   + MV++L+ Y   
Sbjct: 641 DREWCAVIRKLLNMFFDG--AVGEFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIPK 698

Query: 660 SSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASG 719
              ++    +F P+ AGP G+TPLH+AA    S+D++DALT DP  +G  +W +  D++G
Sbjct: 699 QQRNS----LFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTEDPAMVGIEAWKTCRDSTG 754

Query: 720 HSPYSYALMKNNHAYNKLVARKLADRRNGQ----VTIPVGVEIEQSGLAKEQVHG-LSSQ 774
            +P  YA ++ + +Y  L+ RK+  +   +    V IPV     +    KE   G ++S 
Sbjct: 755 FTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQ---KEPKSGPMASA 811

Query: 775 FKQRGKSCTKCAVAAAKLNKRVRGS--QGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIG 832
            +     C  C       +K V G+  + +  RP + SM+AIAAVCVCV L  +  P++ 
Sbjct: 812 LEITQIPCKLCD------HKLVYGTTRRSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVL 865

Query: 833 LV-APFKWENLDFG 845
            V  PF+WE LD+G
Sbjct: 866 YVFQPFRWELLDYG 879

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1

 Score =  298 bits (763), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 180/567 (31%), Positives = 303/567 (53%), Gaps = 46/567 (8%)

Query: 313 TGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQL 372
           T +I+FKLF K+P+ FP  LR +I +WLSN PS++ESYIRPGC+IL++Y+ +P   W++L
Sbjct: 310 TDKIVFKLFGKEPNDFPSDLRAQILSWLSNCPSDIESYIRPGCIILTIYMRLPNWMWDKL 369

Query: 373 EGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWR--TWSSPELISV 430
             +    I  L+  S    WR           L    +GN+ +   W+    +  +++ +
Sbjct: 370 AADPAHWIQKLISLSTDTLWRTGWMYARVQDYLTLSCNGNLMLASPWQPAIGNKHQILFI 429

Query: 431 SPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAG--- 487
           +P+AV      +F ++G N+    TK+ C F G Y  QE T       + D  +  G   
Sbjct: 430 TPIAVACSSTANFSVKGLNIAQPTTKLLCIFGGKYLIQEATEKL----LDDTKMQRGPQC 485

Query: 488 LKIQDTSPSVLGRFFIEVENGFKGN-SFPVIIADATICKELSLLESEFGAEAKVCDVISE 546
           L    + PS  GR FIEVE+  + + SFP ++A+  +C E+  LE      +    ++ +
Sbjct: 486 LTFSCSFPSTSGRGFIEVEDLDQSSLSFPFVVAEEDVCSEIRTLEHLLNLVSFDDTLVEK 545

Query: 547 HQAHEYGRPRSREEVLHFLNELGWLFQRK--RASSIVKG---SDYSLSRFKFLLVFSVDR 601
           +         SR+  L+FL+E GW  QR   RA+S         +  +RF++LL F+VDR
Sbjct: 546 NDLLA-----SRDRALNFLHEFGWFLQRSHIRATSETPKDCTEGFPAARFRWLLSFAVDR 600

Query: 602 GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS 661
             CA++K +LD L +G + +D  S  ++E + +  L+  AV  + + ++D L+ Y+ +S+
Sbjct: 601 EFCAVIKKLLDTLFQGGVDLDVQS--TVEFVLKQDLVFVAVNKRSKPLIDFLLTYTTSSA 658

Query: 662 ------NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL 715
                 +  P +++F P++AGP  ITPLH+AA  SD+  ++DALT+DPQ++G  +W +  
Sbjct: 659 PMDGTESAAPAQFLFTPDIAGPSDITPLHIAATYSDTAGVLDALTDDPQQLGIKAWKNAR 718

Query: 716 DASGHSPYSYALMKNNHAYNKLVARKLADR------RNGQVTIPVGVEIEQSGLAKEQVH 769
           DA+G +P  YA  + + +Y ++V  K+  R           +     +  +   ++ +  
Sbjct: 719 DATGLTPEDYARKRGHESYIEMVQNKIDSRLPKAHVSVTISSTTSTTDFTEKHASQSKTT 778

Query: 770 GLSSQFKQRGK--------SCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCV 821
             ++   ++G+        SC +C     +L  R   ++ L  RP + S++AIAAVCVCV
Sbjct: 779 DQTAFDVEKGQQISTKPPLSCRQC---LPELAYRHHLNRFLSTRPAVLSLVAIAAVCVCV 835

Query: 822 CLFLRGSPDI-GLVAPFKWENLDFGPK 847
            L ++G P I G+  PF+W +L  GPK
Sbjct: 836 GLIMQGPPHIGGMRGPFRWNSLRSGPK 862

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1

 Score =  297 bits (761), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 184/558 (32%), Positives = 296/558 (53%), Gaps = 38/558 (6%)

Query: 306 NSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMP 365
           N DAQ  T +I+FKLF+K PS  P  LR +I  WLS+SP+++ESYIRPGC+IL++Y+ + 
Sbjct: 432 NGDAQCRTDKIVFKLFEKVPSDLPPVLRSQILGWLSSSPTDIESYIRPGCIILTVYLRLV 491

Query: 366 YATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSP 425
            + W++L  N+   ++ L+  S  +FW +    V    Q+A   +G + + +     +  
Sbjct: 492 ESAWKELSDNMSSYLDKLLNSSTGNFWASGLVFVMVRHQIAFMHNGQLMLDRPLANSAHH 551

Query: 426 --ELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEI 483
             +++ V P+A     +++F++ G NL +  +++ C+F G    QE T +      +D+I
Sbjct: 552 YCKILCVRPIAAPFSTKVNFRVEGLNLVSDSSRLICSFEGSCIFQEDTDNIVDDVEHDDI 611

Query: 484 ILAGLKIQDTSPSVLGRFFIEVEN-GFKGNSFPVIIADATICKELSLLESEFGAEAKVCD 542
               L      PS  GR F+EVE+ GF    FP IIA+  IC E+  LES F        
Sbjct: 612 EY--LNFCCPLPSSRGRGFVEVEDGGFSNGFFPFIIAEQDICSEVCELESIF-------- 661

Query: 543 VISEHQAHEYG-RPRSREEVLHFLNELGWLFQRKRASSIVKGSD------YSLSRFKFLL 595
              E  +HE      +R + L FLNELGWL  R   ++I+   D      +++ RF+ L 
Sbjct: 662 ---ESSSHEQADDDNARNQALEFLNELGWLLHR---ANIISKQDKVPLASFNIWRFRNLG 715

Query: 596 VFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIH 655
           +F+++R  CA+ K +LD L  G + +   S E  E++    LL+ AV+MK  +MV  L+ 
Sbjct: 716 IFAMEREWCAVTKLLLDFLFTGLVDIGSQSPE--EVVLSENLLHAAVRMKSAQMVRFLLG 773

Query: 656 YSLTSS-NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI 714
           Y    S   T + ++F P+  GP   TPLH+AA T D++D++DALTNDP  +G ++W + 
Sbjct: 774 YKPNESLKRTAETFLFRPDAQGPSKFTPLHIAAATDDAEDVLDALTNDPGLVGINTWRNA 833

Query: 715 LDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGV-----EIEQSGLAKEQVH 769
            D +G +P  YA  + N AY  +V +K+ ++  G+  + +GV      +   G+   +V 
Sbjct: 834 RDGAGFTPEDYARQRGNDAYLNMVEKKI-NKHLGKGHVVLGVPSSIHPVITDGVKPGEVS 892

Query: 770 -GLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGS 828
             +         SC  C+  A         ++  L RP + +++ IA +CVCV L L   
Sbjct: 893 LEIGMTVPPPAPSCNACSRQALMYPNST--ARTFLYRPAMLTVMGIAVICVCVGLLLHTC 950

Query: 829 PDIGLVAPFKWENLDFGP 846
           P +     F+WE L+ GP
Sbjct: 951 PKVYAAPTFRWELLERGP 968

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1

 Score =  296 bits (759), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 295/561 (52%), Gaps = 57/561 (10%)

Query: 309 AQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYAT 368
           AQ  T RI+FKLF K+P+ FP  LR +I NWL+++P++MESYIRPGC++L++Y+    A+
Sbjct: 398 AQSRTDRIVFKLFGKEPNDFPVALRGQILNWLAHTPTDMESYIRPGCIVLTIYLRQDEAS 457

Query: 369 WEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKS--WRTWSSPE 426
           WE+L  +L   +  L+  SD   W +    +    QLA   +G + +  S   R+    +
Sbjct: 458 WEELCCDLSFSLRRLLDLSDDPLWTDGWLYLRVQNQLAFAFNGQVVLDTSLPLRSHDYSQ 517

Query: 427 LISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYD----- 481
           +I+V PLAV   ++  F ++G NL   GT++ CT  G +  QE T    QG + +     
Sbjct: 518 IITVRPLAVT--KKAQFTVKGINLRRPGTRLLCTVEGTHLVQEAT----QGGMEERDDLK 571

Query: 482 ---EIILAGLKIQDTSPSVLGRFFIEVEN--GFKGNSFPVIIA-DATICKELSLLESEFG 535
              EI       +   P   GR F+E+E+  G   + FP I++ D  IC E+  LES   
Sbjct: 572 ENNEIDFVNFSCE--MPIASGRGFMEIEDQGGLSSSFFPFIVSEDEDICSEIRRLESTL- 628

Query: 536 AEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSD------YSLS 589
                          E+    S  + + F++E+GWL  R    S +  SD      +SL 
Sbjct: 629 ---------------EFTGTDSAMQAMDFIHEIGWLLHRSELKSRLAASDHNPEDLFSLI 673

Query: 590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRM 649
           RFKFL+ FS+DR  C ++K +L+IL E   ++D     +L    E+ LL+RAV+   + M
Sbjct: 674 RFKFLIEFSMDREWCCVMKKLLNILFEEG-TVDPSPDAALS---ELCLLHRAVRKNSKPM 729

Query: 650 VDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPS 709
           V++L+ +S    N T    +F P+ AGPGG+TPLH+AA    S+D++DALT DP   G  
Sbjct: 730 VEMLLRFSPKKKNQTLAG-LFRPDAAGPGGLTPLHIAAGKDGSEDVLDALTEDPGMTGIQ 788

Query: 710 SWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD----RRNGQVTIPVGVEIEQSGLAK 765
           +W +  D +G +P  YA ++ + +Y  LV RKL+     + +  V IP    IE     +
Sbjct: 789 AWKNSRDNTGFTPEDYARLRGHFSYIHLVQRKLSRKPIAKEHVVVNIPESFNIEHKQEKR 848

Query: 766 EQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFL 825
             +   S +  Q      +C +   K        + +  RP + SM+AIAAVCVCV L  
Sbjct: 849 SPMDSSSLEITQ----INQCKLCDHKRVFVTTHHKSVAYRPAMLSMVAIAAVCVCVALLF 904

Query: 826 RGSPDIGLV-APFKWENLDFG 845
           +  P++  V  PF+WE L++G
Sbjct: 905 KSCPEVLYVFQPFRWELLEYG 925

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S9G8|SPL7_ARATH Squamosa promoter-binding-like protein 7 OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2

 Score =  127 bits (319), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 16/234 (6%)

Query: 313 TGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQL 372
           TGRI FKL+D +P++FP  LR +I+ WL+N P E+E YIRPGC IL+++++MP   W +L
Sbjct: 320 TGRISFKLYDWNPAEFPRRLRHQIFQWLANMPVELEGYIRPGCTILTVFIAMPEIMWAKL 379

Query: 373 EGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSP 432
             + +  ++  +       +      V+    +     G   + +      SP+L  V P
Sbjct: 380 SKDPVAYLDEFILKPGKMLFGRGSMTVYLNNMIFRLIKGGTTLKRVDVKLESPKLQFVYP 439

Query: 433 LAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGY---------ASQEVTSSTCQGSIYDEI 483
                G+ +   + G+NL     +   +F G Y         A  +    +C    Y   
Sbjct: 440 TCFEAGKPIELVVCGQNLLQPKCRFLVSFSGKYLPHNYSVVPAPDQDGKRSCNNKFYK-- 497

Query: 484 ILAGLKIQDTSPSVLGRFFIEVENGFKGNSF-PVIIADATICKELSLLESEFGA 536
               + I ++ PS+ G  F+EVEN    ++F P+II DA +C E+ L+E +F A
Sbjct: 498 ----INIVNSDPSLFGPAFVEVENESGLSNFIPLIIGDAAVCSEMKLIEQKFNA 547

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6I576|SPL9_ORYSJ Squamosa promoter-binding-like protein 9 OS=Oryza sativa subsp. japonica GN=SPL9 PE=2 SV=1

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 173/414 (41%), Gaps = 57/414 (13%)

Query: 313 TGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQL 372
           TGR+ FKL+D +P++FP  LR +I+ WLS+ P E+E YIRPGC IL+++V+MP   W++L
Sbjct: 362 TGRVSFKLYDWNPAEFPRRLRHQIFEWLSSMPVELEGYIRPGCTILTVFVAMPQHMWDKL 421

Query: 373 EGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSP 432
             +    + SLV   +S       F +H    +         +  +     SP +  V P
Sbjct: 422 SEDTGNLVKSLVNAPNSLLLGKGAFFIHVNNMIFQVLKDGATLTSTRLEVQSPRIHYVHP 481

Query: 433 LAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQD 492
                G+ +   L G +L     +   +F G Y   +        +   + I +G  I D
Sbjct: 482 SWFEAGKPIDLILCGSSLDQPKFRSLVSFDGLYLKHDCRRILSHETF--DCIGSGEHILD 539

Query: 493 TSPSVL------------GRFFIEVENGFKGNSF-PVIIADATICKELSLLESEFGAEAK 539
           +   +             G  F+EVEN F  ++F P+++    +C EL  +       + 
Sbjct: 540 SQHEIFRINITTSKLDTHGPAFVEVENMFGLSNFVPILVGSKHLCSELEQIHDALCGSSD 599

Query: 540 V----CDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLL 595
           +    C++          R   +  +L FL ++GWL ++            S+  F+ LL
Sbjct: 600 ISSDPCEL----------RGLRQTAMLGFLIDIGWLIRKP-----------SIDEFQNLL 638

Query: 596 VFS-VDRGCCAL-------VKAILDILVEGNLSMDG-LSRESLEMLWEIQLLNRAVKM-- 644
             + + R  C +          +L+I+V    S+D  +  E L  L + +L N   +   
Sbjct: 639 SLANIQRWICMMKFLIQNDFINVLEIIVN---SLDNIIGSELLSNLEKGRLENHVTEFLG 695

Query: 645 ---KCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDI 695
              + R +VD    Y      DT     + PN    G   PL  +  TS   D+
Sbjct: 696 YVSEARNIVDNRPKYDKQRQVDTRWAGDYAPNQPKLGISVPLAESTGTSGEHDL 749


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.130    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,756,545
Number of Sequences: 539616
Number of extensions: 13275636
Number of successful extensions: 38248
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 280
Number of HSP's that attempted gapping in prelim test: 36052
Number of HSP's gapped (non-prelim): 1202
length of query: 847
length of database: 191,569,459
effective HSP length: 126
effective length of query: 721
effective length of database: 123,577,843
effective search space: 89099624803
effective search space used: 89099624803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	847
225457689	1070	PREDICTED: squamosa promoter-binding-lik	0.977	0.773	0.731	0.0
224065627	1044	predicted protein [Populus trichocarpa]	0.988	0.801	0.685	0.0
255539362	1073	Squamosa promoter-binding protein, putat	0.984	0.777	0.714	0.0
297745623	921	unnamed protein product [Vitis vinifera]	0.835	0.768	0.638	0.0
449455740	1031	PREDICTED: squamosa promoter-binding-lik	0.975	0.801	0.614	0.0
449531663	1031	PREDICTED: LOW QUALITY PROTEIN: squamosa	0.975	0.801	0.612	0.0
356523388	1019	PREDICTED: squamosa promoter-binding-lik	0.955	0.793	0.615	0.0
356574155	1009	PREDICTED: squamosa promoter-binding-lik	0.956	0.802	0.607	0.0
357438813	1003	Squamosa promoter binding-like protein [	0.940	0.794	0.563	0.0
297845078	1040	hypothetical protein ARALYDRAFT_472338 [	0.955	0.777	0.578	0.0

>gi|225457689|ref|XP_002273784.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Vitis vinifera]

 Score = 1190 bits (3079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/843 (73%), Positives = 697/843 (82%), Gaps = 15/843 (1%)

Query: 7    GNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLA 66
            GN+ N    N+DIVNLLTALAR QG  E +S + SSVPDR+QL+ ILSK+NSLPLPAD A
Sbjct: 237  GNRDNTGNRNLDIVNLLTALARTQGNNEVKSANNSSVPDRDQLIQILSKLNSLPLPADFA 296

Query: 67   AKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRS 126
            AKL   GSLNR TP  +S++ QNRLN  TSSPSTMDLLAVLS+TL A +PD LA  SQRS
Sbjct: 297  AKLPISGSLNRNTPGQSSSEHQNRLNGKTSSPSTMDLLAVLSATLAASAPDALAFLSQRS 356

Query: 127  SHSSDSEKTKSTCPEQAT-PNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNL 185
            S SSDSEKTK TC +QAT P+  KR T++FPSVGGERSSTSYQSP+EDSD Q QET+ NL
Sbjct: 357  SQSSDSEKTKLTCLDQATGPDLQKRQTLEFPSVGGERSSTSYQSPMEDSDCQVQETQPNL 416

Query: 186  PLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQTFFPMQSTSETVKSE 244
            PLQLFSSS EDDSPPKL S+RKYFSSDSSNP+EERSPSSSP VVQ  FPMQ++ ETVK E
Sbjct: 417  PLQLFSSSLEDDSPPKLGSARKYFSSDSSNPMEERSPSSSPPVVQKLFPMQASMETVKPE 476

Query: 245  KLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSS 304
            ++SI  EVN N+   R+ G+   LELFR S++ ADN + QSFPYQAGYTSSSGSDHSPSS
Sbjct: 477  RMSISGEVNGNIGAGRAHGAT-SLELFRRSDRGADNGAVQSFPYQAGYTSSSGSDHSPSS 535

Query: 305  LNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSM 364
            LNSDAQD TGRIIFKLFDKDPS FPGTLR EIYNWL++SPSEMESYIRPGCV+LS+Y SM
Sbjct: 536  LNSDAQDRTGRIIFKLFDKDPSHFPGTLRTEIYNWLAHSPSEMESYIRPGCVVLSVYASM 595

Query: 365  PYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSS 424
              A WEQLE NLL R+NSLVQDSDSDFWRN RFLVHTG++LASHKDG IR+CKSWRTW+S
Sbjct: 596  SSAAWEQLEENLLHRVNSLVQDSDSDFWRNGRFLVHTGRELASHKDGKIRLCKSWRTWNS 655

Query: 425  PELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEII 484
            PELISVSPLAVVGGQE SF L+GRNL N GTKIHCT+MGGY S+EV     QG++YDEI 
Sbjct: 656  PELISVSPLAVVGGQETSFLLKGRNLANPGTKIHCTYMGGYTSKEVPGLARQGTVYDEIS 715

Query: 485  LAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVI 544
                KI D  PSVLGR FIEVENGF+GNSFPVI+ADATICKEL LLESEF  EAKVCDVI
Sbjct: 716  FGSFKINDAIPSVLGRCFIEVENGFRGNSFPVIVADATICKELRLLESEFDEEAKVCDVI 775

Query: 545  SEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCC 604
            SE Q ++ GRP SREEVLHFLNELGWLFQRK   S++ G DYSL+RFKFL  FSV+R CC
Sbjct: 776  SEDQVYDSGRPSSREEVLHFLNELGWLFQRK--FSMLAGPDYSLARFKFLFTFSVERDCC 833

Query: 605  ALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDT 664
            ALVK +LDILVE NL  DGLS +SLE L E+QLL+RAVK + R+MVDLLIHYS+ SS  +
Sbjct: 834  ALVKTLLDILVERNLGSDGLSSKSLETLSEVQLLSRAVKRRYRKMVDLLIHYSVASS--S 891

Query: 665  PQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYS 724
             +KYIFPPNL G GGITPLHLAACT+ SDDIIDALT+DPQEIG  SWNS+LDASG SPY+
Sbjct: 892  SKKYIFPPNLVGAGGITPLHLAACTAGSDDIIDALTSDPQEIGLHSWNSLLDASGQSPYA 951

Query: 725  YALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQ--SGLAKEQVHGLSSQFKQRGKSC 782
            YA+M+NNH+YN+LVARKLADRRNGQV++ +   +EQ    + +EQ       F Q   SC
Sbjct: 952  YAMMRNNHSYNRLVARKLADRRNGQVSLSIENAMEQPWPKVGQEQ------HFGQGRSSC 1005

Query: 783  TKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENL 842
             KCAV AAK ++R+ GSQGLL+RPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENL
Sbjct: 1006 AKCAVVAAKYSRRMPGSQGLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENL 1065

Query: 843  DFG 845
            D+G
Sbjct: 1066 DYG 1068

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065627|ref|XP_002301891.1| predicted protein [Populus trichocarpa] gi|222843617|gb|EEE81164.1| predicted protein [Populus trichocarpa]

 Score = 1160 bits (3001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/851 (68%), Positives = 684/851 (80%), Gaps = 14/851 (1%)

Query: 7    GNQSNNPTANVDIVNLLTALARAQGKTEDRSI----------SCSSVPDREQLLMILSKI 56
            GN   N   N+DIVNLLTALAR+QGKT    I          +C +VPD++QL+ IL+KI
Sbjct: 194  GNPDMNNNGNLDIVNLLTALARSQGKTYLPMIDFYVPPFVLTNCPTVPDKDQLIQILNKI 253

Query: 57   NSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSP 116
            NSLPLP DLAAKL N  SLN K P       QNRLN   SSPST DLLAVLS+TL A +P
Sbjct: 254  NSLPLPMDLAAKLSNIASLNVKNPNQPYLGHQNRLNGTASSPSTNDLLAVLSTTLAASAP 313

Query: 117  DTLAAHSQRSSHSSDSEKTKSTCPEQAT-PNFLKRTTMDFPSVGGERSSTSYQSPVEDSD 175
            D LA  SQRSS SSD++K+K   P Q T P+  KR+ ++FP+VG ER S  Y+SP EDSD
Sbjct: 314  DALAILSQRSSQSSDNDKSKLPGPNQVTVPHLQKRSNVEFPAVGVERISRCYESPAEDSD 373

Query: 176  GQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQTFFPM 234
             Q QE+R NLPLQLFSSSPE++S  K +SS KYFSSDSSNPIEERSPSSSP VVQ  FP+
Sbjct: 374  YQIQESRPNLPLQLFSSSPENESRQKPASSGKYFSSDSSNPIEERSPSSSPPVVQKLFPL 433

Query: 235  QSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTS 294
            QST+ET+KSEK+S+ REVNANVEG+RS G ++PLELFRG N+  D+ SFQSFPY+ GYTS
Sbjct: 434  QSTAETMKSEKMSVSREVNANVEGDRSHGCVLPLELFRGPNREPDHSSFQSFPYRGGYTS 493

Query: 295  SSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPG 354
            SSGSDHSPSS NSD QD TGRIIFKLFDKDPS FPGTLR +IYNWLSNSPSEMESYIRPG
Sbjct: 494  SSGSDHSPSSQNSDPQDRTGRIIFKLFDKDPSHFPGTLRTKIYNWLSNSPSEMESYIRPG 553

Query: 355  CVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIR 414
            CV+LS+Y+SMP A+WEQLE NLLQ ++SLVQDSDSD WR+ RFL++TG+QLASHKDG +R
Sbjct: 554  CVVLSVYLSMPSASWEQLERNLLQLVDSLVQDSDSDLWRSGRFLLNTGRQLASHKDGKVR 613

Query: 415  VCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSST 474
            +CKSWRTWSSPELI VSP+AV+GGQE S +L+GRNLT  GTKIHCT+MGGY S+EVT S+
Sbjct: 614  LCKSWRTWSSPELILVSPVAVIGGQETSLQLKGRNLTGPGTKIHCTYMGGYTSKEVTDSS 673

Query: 475  CQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEF 534
              GS+YDEI + G KI   SPS+LGR FIEVENGFKGNSFPVIIADA+ICKEL LLESEF
Sbjct: 674  SPGSMYDEINVGGFKIHGPSPSILGRCFIEVENGFKGNSFPVIIADASICKELRLLESEF 733

Query: 535  GAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFL 594
               A V +++SE Q  + GRPRSREEV+HFLNELGWLFQRK   S+ +  DYSL+RFKFL
Sbjct: 734  DENAVVSNIVSEEQTRDLGRPRSREEVMHFLNELGWLFQRKSMPSMHEAPDYSLNRFKFL 793

Query: 595  LVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLI 654
            L+FSV+R  C LVK ILD+LVE N   D LS+E LEML+EIQLLNR+VK +CR+M DLLI
Sbjct: 794  LIFSVERDYCVLVKTILDMLVERNTCRDELSKEHLEMLYEIQLLNRSVKRRCRKMADLLI 853

Query: 655  HYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI 714
            HYS+   +++ + YIFPPN+ GPGGITPLHLAAC S SD ++DALTNDP EIG S WNS+
Sbjct: 854  HYSIIGGDNSSRTYIFPPNVGGPGGITPLHLAACASGSDGLVDALTNDPHEIGLSCWNSV 913

Query: 715  LDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQ 774
            LDA+G SPY+YA+M  NH+YN LVARKLAD+RNGQ+++ +G EIEQ+ L  EQ H   SQ
Sbjct: 914  LDANGLSPYAYAVMTKNHSYNLLVARKLADKRNGQISVAIGNEIEQAAL--EQEHVTISQ 971

Query: 775  FKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLV 834
            F++  KSC KCA  AAK++ R  GSQGLL RPY+HSMLAIAAVCVCVCLF RG+PDIGLV
Sbjct: 972  FQRERKSCAKCASVAAKMHGRFLGSQGLLQRPYVHSMLAIAAVCVCVCLFFRGAPDIGLV 1031

Query: 835  APFKWENLDFG 845
            APFKWENL++G
Sbjct: 1032 APFKWENLNYG 1042

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539362|ref|XP_002510746.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223551447|gb|EEF52933.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score = 1156 bits (2990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/841 (71%), Positives = 691/841 (82%), Gaps = 7/841 (0%)

Query: 7    GNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLA 66
            GN+    +AN+DIVNLLTALAR QGK  D+ I+ SS+PDR+QL+ ILSKINSLPLP DLA
Sbjct: 236  GNRDTASSANLDIVNLLTALARTQGKHADKRINASSMPDRDQLIQILSKINSLPLPMDLA 295

Query: 67   AKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRS 126
            A+L N GSLNRK P   S++ QNRL    SSPSTMDLLAVLS+TL A +PD LA  SQRS
Sbjct: 296  AQLSNIGSLNRKNPEQPSSEHQNRLLGTASSPSTMDLLAVLSATLAASAPDALAFLSQRS 355

Query: 127  SHSSDSEKTKSTCPEQ-ATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNL 185
            S SSDSEK+K TC +Q A PN  KR  +DFPS+  E+SS+ YQSPVE+SD Q QE+  NL
Sbjct: 356  SQSSDSEKSKLTCVDQDAGPNLQKRPIVDFPSMALEKSSSCYQSPVEESDCQLQESHPNL 415

Query: 186  PLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQTFFPMQSTSETVKSE 244
            PLQLFSSSPE+ SPPKL+SSRKYFSSDSSNP E RSPSSSP V+Q  FP+QS ++TVKSE
Sbjct: 416  PLQLFSSSPEESSPPKLASSRKYFSSDSSNPSEGRSPSSSPPVMQKLFPLQSNADTVKSE 475

Query: 245  KLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSS 304
            K+SI REVNAN+EG+RS GSI+PLELFRGS+  A   S+QSFPYQAGYTSSSGSDHSPSS
Sbjct: 476  KVSITREVNANIEGSRSHGSILPLELFRGSDGRAVQSSYQSFPYQAGYTSSSGSDHSPSS 535

Query: 305  LNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSM 364
             NSDAQD TGRIIFKLFDKDPS FPG LR +IYNWLSNSPSEMESYIRPGCV+LS+Y+SM
Sbjct: 536  QNSDAQDRTGRIIFKLFDKDPSHFPGKLRTQIYNWLSNSPSEMESYIRPGCVVLSVYLSM 595

Query: 365  PYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSS 424
              A WE+LE NLLQ+++SLVQDS SDFWR  RFL+HTG+QLASHKDGNIR+CKSWRTWSS
Sbjct: 596  SSAKWERLERNLLQQVDSLVQDSYSDFWRTGRFLLHTGRQLASHKDGNIRLCKSWRTWSS 655

Query: 425  PELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEII 484
            PELISVSP+AVVGGQE S  LRGRNLTN GTKIHCT+MGGY S EV  ST  G+IYDEI 
Sbjct: 656  PELISVSPVAVVGGQETSLLLRGRNLTNAGTKIHCTYMGGYTSMEVMESTLPGAIYDEIN 715

Query: 485  LAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVI 544
            ++G K+  + PS LGR FIEVENGFKGNSFPVI+ADATICKEL LLE EF   +K CD+I
Sbjct: 716  MSGFKVHGSPPSSLGRLFIEVENGFKGNSFPVIVADATICKELRLLECEFDEISKDCDII 775

Query: 545  SEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCC 604
            SE QA   GRP+SREE LHFLNELGWLFQR+RASS+ +  DYSL RFKFLL+FSV+R  C
Sbjct: 776  SEEQAQYLGRPKSREEALHFLNELGWLFQRRRASSVYEIPDYSLGRFKFLLIFSVERDYC 835

Query: 605  ALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDT 664
            ALVK ILD+LVE N+ M GLS+E LEML EI L+NRAVK +CR+MVDLLIHY +  S  +
Sbjct: 836  ALVKTILDMLVERNMGMSGLSKECLEMLSEIHLVNRAVKRQCRKMVDLLIHYYINCSELS 895

Query: 665  PQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYS 724
             + YIFPP+LAGPGGITPLHLAACTS SDD++DALTNDPQEIG S WNS++DA+  SPY 
Sbjct: 896  SKSYIFPPSLAGPGGITPLHLAACTSGSDDLVDALTNDPQEIGLSCWNSLVDANHQSPYD 955

Query: 725  YALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKSCTK 784
            YA M +NH+YNKLVA K ADRRNGQV++ +G EI QS  ++     + S  +Q  +SC +
Sbjct: 956  YATMTDNHSYNKLVAHKHADRRNGQVSVRIGNEIVQSLSSR-----MISDVEQERRSCAR 1010

Query: 785  CAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDF 844
            CA  AAK N+R+ GSQGLL RPYIHSMLAIAAVCVCVCLFLRG+PDIGLVAPFKWE LD+
Sbjct: 1011 CATVAAKYNRRIMGSQGLLQRPYIHSMLAIAAVCVCVCLFLRGAPDIGLVAPFKWETLDY 1070

Query: 845  G 845
            G
Sbjct: 1071 G 1071

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745623|emb|CBI40788.3| unnamed protein product [Vitis vinifera]

 Score =  977 bits (2525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/842 (63%), Positives = 602/842 (71%), Gaps = 134/842 (15%)

Query: 7   GNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLA 66
           GN+ N    N+DIVNLLTALAR QG  E +S + SSVPDR+QL+ ILSK+NSLPLPAD A
Sbjct: 209 GNRDNTGNRNLDIVNLLTALARTQGNNEVKSANNSSVPDRDQLIQILSKLNSLPLPADFA 268

Query: 67  AKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRS 126
           AKL   GSLNR TP  +S++ QNRLN  TSSPSTMDLLAVLS+TL A +PD LA  SQRS
Sbjct: 269 AKLPISGSLNRNTPGQSSSEHQNRLNGKTSSPSTMDLLAVLSATLAASAPDALAFLSQRS 328

Query: 127 SHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLP 186
           S SSDSEKT                              +YQSP+EDSD Q         
Sbjct: 329 SQSSDSEKT------------------------------NYQSPMEDSDCQ--------- 349

Query: 187 LQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQTFFPMQSTSETVKSEK 245
                                YFSSDSSNP+EERSPSSSP VVQ                
Sbjct: 350 ---------------------YFSSDSSNPMEERSPSSSPPVVQKL-------------- 374

Query: 246 LSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSL 305
                                           ADN + QSFPYQAGYTSSSGSDHSPSSL
Sbjct: 375 -------------------------------GADNGAVQSFPYQAGYTSSSGSDHSPSSL 403

Query: 306 NSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMP 365
           NSDAQD TGRIIFKLFDKDPS FPGTLR EIYNWL++SPSEMESYIRPGCV+LS+Y SM 
Sbjct: 404 NSDAQDRTGRIIFKLFDKDPSHFPGTLRTEIYNWLAHSPSEMESYIRPGCVVLSVYASMS 463

Query: 366 YATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSP 425
            A WEQLE NLL R+NSLVQDSDSDFWRN RFLVHTG++LASHKDG IR+CKSWRTW+SP
Sbjct: 464 SAAWEQLEENLLHRVNSLVQDSDSDFWRNGRFLVHTGRELASHKDGKIRLCKSWRTWNSP 523

Query: 426 ELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIIL 485
           ELISVSPLAVVGGQE SF L+GRNL N GTKIHCT+MGGY S+EV     QG++YDEI  
Sbjct: 524 ELISVSPLAVVGGQETSFLLKGRNLANPGTKIHCTYMGGYTSKEVPGLARQGTVYDEISF 583

Query: 486 AGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVIS 545
              KI D  PSVLGR FIEVENGF+GNSFPVI+ADATICKEL LLESEF  EAKV     
Sbjct: 584 GSFKINDAIPSVLGRCFIEVENGFRGNSFPVIVADATICKELRLLESEFDEEAKV----- 638

Query: 546 EHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCA 605
                      SREEVLHFLNELGWLFQRK   S++ G DYSL+RFKFL  FSV+R CCA
Sbjct: 639 -----------SREEVLHFLNELGWLFQRK--FSMLAGPDYSLARFKFLFTFSVERDCCA 685

Query: 606 LVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTP 665
           LVK +LDILVE NL  DGLS +SLE L E+QLL+RAVK + R+MVDLLIHYS+ SS  + 
Sbjct: 686 LVKTLLDILVERNLGSDGLSSKSLETLSEVQLLSRAVKRRYRKMVDLLIHYSVASS--SS 743

Query: 666 QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSY 725
           +KYIFPPNL G GGITPLHLAACT+ SDDIIDALT+DPQEIG  SWNS+LDASG SPY+Y
Sbjct: 744 KKYIFPPNLVGAGGITPLHLAACTAGSDDIIDALTSDPQEIGLHSWNSLLDASGQSPYAY 803

Query: 726 ALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQ--SGLAKEQVHGLSSQFKQRGKSCT 783
           A+M+NNH+YN+LVARKLADRRNGQV++ +   +EQ    + +EQ       F Q   SC 
Sbjct: 804 AMMRNNHSYNRLVARKLADRRNGQVSLSIENAMEQPWPKVGQEQ------HFGQGRSSCA 857

Query: 784 KCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLD 843
           KCAV AAK ++R+ GSQGLL+RPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLD
Sbjct: 858 KCAVVAAKYSRRMPGSQGLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLD 917

Query: 844 FG 845
           +G
Sbjct: 918 YG 919

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455740|ref|XP_004145609.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Cucumis sativus]

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/846 (61%), Positives = 631/846 (74%), Gaps = 20/846 (2%)

Query: 7    GNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLA 66
            G++    T N+DIV+LLT LARAQGK ED+S+      + +QL+ IL+KINSLPLPADLA
Sbjct: 197  GSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLA 256

Query: 67   AKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRS 126
            AKL N  +   K P  +S   QN+LN N SSPSTMDLL VLS+TL A +PD LA  SQ+S
Sbjct: 257  AKLPNLENFKGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLAASAPDALAMLSQKS 316

Query: 127  SHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLP 186
            S SSDSEKT+S+CP  +    L+   ++ PSVGGERSSTSYQSP+EDSDGQ Q TRV LP
Sbjct: 317  SVSSDSEKTRSSCPSGSD---LQNRPLELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLP 373

Query: 187  LQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQTFFPMQSTSETVKSEK 245
            LQLF SSPE D+PP L++SRKYFSSDSSNPIEERSPSSSP ++QT FP+QST ET  + K
Sbjct: 374  LQLFGSSPEHDAPPNLTASRKYFSSDSSNPIEERSPSSSPPLLQTLFPVQSTEETTSNGK 433

Query: 246  LSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSL 305
            + I +EVN  VE  +   S +P ELFR  + A  N SFQ+  YQAGYTSS       SSL
Sbjct: 434  MPIRKEVNG-VEVRKPPSSNIPFELFRELDGARPN-SFQTIHYQAGYTSSGSDHSP-SSL 490

Query: 306  NSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMP 365
            NSDAQD TGRI FKLF+KDPSQFPGTLR +IYNWLSN PSEMESYIRPGCV+LS+Y+SM 
Sbjct: 491  NSDAQDRTGRISFKLFEKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMS 550

Query: 366  YATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSP 425
               WE+LE NL+  + SLV   + DFWR+ RFLV+TG+QLASHKDG I + KS + WS+P
Sbjct: 551  SIAWERLEENLVLHLKSLVHSEELDFWRSGRFLVYTGRQLASHKDGKIHLNKSSKAWSNP 610

Query: 426  ELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQG----SIYD 481
            EL SVSPLAVV GQ+ SF LRGRNL   GT+IHCT MGGY S+EV   +  G     IYD
Sbjct: 611  ELTSVSPLAVVSGQKTSFLLRGRNLKIPGTRIHCTSMGGYISEEVMGLSSLGLSSEGIYD 670

Query: 482  EIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVC 541
            EI     K+ D SP+ LGR FIEVENGF+GNSFPVIIADATIC+EL  LES+F  E KV 
Sbjct: 671  EIHSRSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICRELRHLESDFD-EFKVP 729

Query: 542  DVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDR 601
            D   E  +    +PR R+E+L FLNELGWLFQR+R S  +   D+ + RF+FLL FS +R
Sbjct: 730  DSSLESHSSVSSQPRLRDEILQFLNELGWLFQRERFSYELDNPDFLIRRFRFLLTFSAER 789

Query: 602  GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS 661
              CALVK +LDIL +  L  DGLS +SLEM+ E+QLLNR+VK +CR+MVDLL+HY ++  
Sbjct: 790  DFCALVKTLLDILAKKCLITDGLSMKSLEMISELQLLNRSVKRRCRQMVDLLVHYHVSGV 849

Query: 662  NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHS 721
             D+ +KY+FPPN  GPGGITPLHLAA  +D+++++DALTNDP EIG   W+S LD SG S
Sbjct: 850  GDSEKKYLFPPNFIGPGGITPLHLAASMADAENLVDALTNDPLEIGLECWSSQLDESGRS 909

Query: 722  PYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKS 781
            P +YALM+ NH  N+LV RKLADR+NGQV++ +G EIEQ  ++  +      + + +G+S
Sbjct: 910  PQAYALMRGNHNCNELVKRKLADRKNGQVSVRIGNEIEQLEVSSGE------RGRVKGRS 963

Query: 782  CTKCAVAAAKLNKRVRGS--QGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKW 839
            C++CAV AA+ N+RV GS    LL+RPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKW
Sbjct: 964  CSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKW 1023

Query: 840  ENLDFG 845
            ENL +G
Sbjct: 1024 ENLGYG 1029

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531663|ref|XP_004172805.1| PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 14-like [Cucumis sativus]

 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/846 (61%), Positives = 629/846 (74%), Gaps = 20/846 (2%)

Query: 7    GNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLA 66
            G++    T N+DIV+LLT LARAQGK ED+S+      + +QL+ IL+KINSLPLPADLA
Sbjct: 197  GSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLA 256

Query: 67   AKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRS 126
            AKL N  +   K P  +S   QN+LN N SSPSTMDLL VLS+TL A +PD LA  SQ+S
Sbjct: 257  AKLPNLENFKGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLAASAPDALAMLSQKS 316

Query: 127  SHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLP 186
            S SSDSEK +S+CP  +    L+   ++ PSVGGERSSTSYQSP+EDSDGQ Q TRV LP
Sbjct: 317  SVSSDSEKXRSSCPSGSD---LQNRPLELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLP 373

Query: 187  LQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQTFFPMQSTSETVKSEK 245
            LQLF SSPE D+PP L++SRKYFSSDSSNPIEERSPSSSP ++QT FP+QST ET  + K
Sbjct: 374  LQLFGSSPEHDAPPNLTASRKYFSSDSSNPIEERSPSSSPPLLQTLFPVQSTEETTSNGK 433

Query: 246  LSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSL 305
            + I +EVN  VE  +   S +P ELFR  + A  N SFQ+  YQAGYTSS       SSL
Sbjct: 434  MPIRKEVNG-VEVRKPPSSNIPFELFRELDGARPN-SFQTIHYQAGYTSSGSDHSP-SSL 490

Query: 306  NSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMP 365
            NSDAQD TGRI FKLF+KDPSQFPGTLR +IYNWLSN PSEMESYIRPGCV+LS+Y+SM 
Sbjct: 491  NSDAQDRTGRISFKLFEKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMS 550

Query: 366  YATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSP 425
               WE+LE NL+  + SLV   + DFWR+ RFLV+TG+QLASHKDG I + KS + WS+P
Sbjct: 551  SIAWERLEENLVLHLKSLVHSEELDFWRSGRFLVYTGRQLASHKDGKIHLNKSSKAWSNP 610

Query: 426  ELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQG----SIYD 481
            EL SVSPLAVV GQ+ SF LRGRNL   GT+IHCT MGGY S+EV   +  G     IYD
Sbjct: 611  ELTSVSPLAVVSGQKTSFLLRGRNLKIPGTRIHCTSMGGYISEEVMGLSSLGLSSEGIYD 670

Query: 482  EIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVC 541
            EI     K+ D SP+ LGR FIEVENGF+GNSFPVIIADATIC+EL  LES+F  E KV 
Sbjct: 671  EIHSRSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICRELRHLESDFD-EFKVP 729

Query: 542  DVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDR 601
            D   E  +    +PR R+E+L FLNELGWLFQR+R S  +   D+ + RF+FLL FS +R
Sbjct: 730  DSSLESHSSVSSQPRLRDEILQFLNELGWLFQRERFSYELDNPDFLIRRFRFLLTFSAER 789

Query: 602  GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS 661
              CALVK +LDIL +  L  DGLS +SLEM+ E+QLLNR+V  +CR+MVDLL+HY ++  
Sbjct: 790  DFCALVKTLLDILAKKCLITDGLSMKSLEMISELQLLNRSVXRRCRQMVDLLVHYHVSGV 849

Query: 662  NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHS 721
             D+ +KY+FPPN  GPGGITPLHLAA  +D+++++DALTNDP EIG   W+S LD SG S
Sbjct: 850  GDSEKKYLFPPNFIGPGGITPLHLAASMADAENLVDALTNDPLEIGLECWSSQLDESGRS 909

Query: 722  PYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKS 781
            P +YALM+ NH  N+LV RKLADR+NGQV++ +G EIEQ  ++  +      + + +G+S
Sbjct: 910  PQAYALMRGNHNCNELVKRKLADRKNGQVSVRIGNEIEQLEVSSGE------RGRVKGRS 963

Query: 782  CTKCAVAAAKLNKRVRGS--QGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKW 839
            C++CAV AA+ N+RV GS    LL+RPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKW
Sbjct: 964  CSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKW 1023

Query: 840  ENLDFG 845
            ENL +G
Sbjct: 1024 ENLGYG 1029

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523388|ref|XP_003530322.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Glycine max]

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/845 (61%), Positives = 620/845 (73%), Gaps = 36/845 (4%)

Query: 16   NVDIVNLLTALARA-QGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGS 74
            N++I NLLTA+A A QGK E++    S V DREQL+ IL+KI   PLPADLA KL + GS
Sbjct: 194  NLEIFNLLTAIAGASQGKFEEKR---SQVSDREQLVQILNKI---PLPADLATKLLDAGS 247

Query: 75   LN---RKTPVHTST--------DVQNRLNENTSSPSTMDLLAVLSSTLTA-PSPDTLAAH 122
             N   +K  V   T        +  + LN   ++P TMDLLAVLS+TL+   +PD+ A+ 
Sbjct: 248  GNVNGKKDHVQLQTPSSSYQCHESHDLLNHTPAAPLTMDLLAVLSTTLSGGSAPDSSASP 307

Query: 123  SQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETR 182
            SQ  S SSD      T  +Q            F SVGGERSS+S QSPVEDSD Q  E R
Sbjct: 308  SQNRSCSSDGGSADQTRQQQ------------FFSVGGERSSSSSQSPVEDSDCQ--EVR 353

Query: 183  VNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQTFFPMQSTSETV 241
            VNLPLQLFSSSPEDDS PKL+SSRKYFSSDSSNP EERSPSSSP +V+  F +Q  +  +
Sbjct: 354  VNLPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPAEERSPSSSPPIVEMQFDLQDGARGL 413

Query: 242  KSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADN-CSFQSFPYQAGYTSSSGSDH 300
            K E +S GR VNAN E ++S  S + L+LF+GSN       S QS P+QAGYTSS GSDH
Sbjct: 414  KPESISSGRGVNANKEASQSHSSNISLDLFKGSNNWIQQPSSLQSVPFQAGYTSS-GSDH 472

Query: 301  SPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSL 360
            SP SLNSDAQD TGRI+FKLFDK PS FPGTLR +IYNWLSN PS+MESYIRPGCV+LS+
Sbjct: 473  SPPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLSI 532

Query: 361  YVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWR 420
            Y SM  A WE+LE N LQ ++SL+Q+SDSDFWRN RFLVH+G +L SHKDG IR+CK WR
Sbjct: 533  YASMSSADWERLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSRLVSHKDGKIRICKPWR 592

Query: 421  TWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIY 480
            TW SPELISVSPLA+V GQE S  L+GRNL+ LGTKIHCT  G YAS EV  S   G +Y
Sbjct: 593  TWKSPELISVSPLAIVSGQETSISLKGRNLSTLGTKIHCTGTGSYASAEVIGSAHSGVMY 652

Query: 481  DEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKV 540
            D+I L+G K+QD SP VLGR FIEVENGFKGNSFPVIIAD TICKEL  LESEF  E K+
Sbjct: 653  DKIKLSGFKVQDVSPGVLGRCFIEVENGFKGNSFPVIIADETICKELRPLESEFDEEEKI 712

Query: 541  CDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVD 600
            CD ISE   H +GRPRSREE LHFLNELGWLFQR+R S + +   YSL RFKF+L+F+V+
Sbjct: 713  CDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPCYSLDRFKFVLIFAVE 772

Query: 601  RGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTS 660
            R CC L+K +LD+LV  +L  + LS  S+EML  IQLLNRAVK K   MVDLLIHYS+ S
Sbjct: 773  RNCCMLIKTLLDVLVGKHLQGEWLSTGSVEMLNAIQLLNRAVKGKYVGMVDLLIHYSIPS 832

Query: 661  SNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGH 720
             N T +KY+FPPNL GPGGITPLHLAACTS S+ ++D+LT+DPQEIG   W S++DA+G 
Sbjct: 833  KNGTSRKYVFPPNLEGPGGITPLHLAACTSGSESVVDSLTSDPQEIGLKCWESLVDANGQ 892

Query: 721  SPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGK 780
            SP++YA+M+NN +YN LVARKLADR+ G++++ +   IEQ  L  E     S   K+   
Sbjct: 893  SPHAYAMMRNNDSYNALVARKLADRQRGEISVTIANAIEQQSLRVELKQKQSYLVKRGQS 952

Query: 781  SCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWE 840
            SC KCA A  + N+RV GS GLL+RP+I+SMLA+AAVCVCVC+F RG P +G VAPF WE
Sbjct: 953  SCAKCANAEIRYNRRVPGSHGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWE 1012

Query: 841  NLDFG 845
            NLD+G
Sbjct: 1013 NLDYG 1017

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574155|ref|XP_003555217.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Glycine max]

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/843 (60%), Positives = 615/843 (72%), Gaps = 33/843 (3%)

Query: 16   NVDIVNLLTALARA-QGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGS 74
            N++I +LLTA+A A QGK E++    S VP REQL+ IL++I   PLPADLA KL + GS
Sbjct: 185  NLEIFDLLTAIAGASQGKFEEKR---SQVPVREQLVQILNRI---PLPADLATKLLDAGS 238

Query: 75   LN---RKTPVHTST-------DVQNRLNENTSSPSTMDLLAVLSSTLTAPS-PDTLAAHS 123
             N   +K  V   T       +  ++LN   ++P TMDLLAVLS+TL+  S PD  A+ S
Sbjct: 239  GNVNGKKDQVQLQTPSSYQRHESHDQLNHTPAAPLTMDLLAVLSTTLSGGSAPDASASPS 298

Query: 124  QRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRV 183
            Q  S +SD      T  +Q            F SVGGERSS+S +SPVEDSD Q ++ RV
Sbjct: 299  QNHSCNSDGGSADQTRQQQ------------FFSVGGERSSSSSRSPVEDSDCQ-EDVRV 345

Query: 184  NLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKS 243
            NLPLQLFSSSPEDDS PKL+SSRKYFSSDSSNP EERSPSSSPVV+  F +Q  +  +K 
Sbjct: 346  NLPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPAEERSPSSSPVVEMLFDLQGGARGLKP 405

Query: 244  EKLSIGREVNANVEGNRSRGSIMPLELFRGSN-KAADNCSFQSFPYQAGYTSSSGSDHSP 302
            E +S GREV AN E ++S  S + L+LF+GSN +     S QS P+QAGYTSS GSDHSP
Sbjct: 406  ESISSGREVIANKEASQSHSSNISLDLFKGSNNRIQQPSSLQSVPFQAGYTSS-GSDHSP 464

Query: 303  SSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYV 362
             SLNSDAQD TGRI+FKLFDK PS FPGTLR +IYNWLSN PS+MESYIRPGCV+LS+Y 
Sbjct: 465  PSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLSIYA 524

Query: 363  SMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTW 422
            SM  A WE+LE N LQ ++SL+Q+SDSDFWRN RFLVH+G Q  SHKDG IR+CK WRTW
Sbjct: 525  SMSSADWEKLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSQFVSHKDGKIRICKPWRTW 584

Query: 423  SSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDE 482
             SPELISVSPLA+V G E S  L+GRNL+  GTKIHCT  G YAS EV  S   G +YD+
Sbjct: 585  KSPELISVSPLAIVSGHETSISLKGRNLSTPGTKIHCTGTGSYASAEVIGSAYSGVMYDK 644

Query: 483  IILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCD 542
            I L+  K+QD S  VLGR FIEVENGFKGNSFPVIIAD TICKEL  LESEF  E K+CD
Sbjct: 645  IKLSAFKVQDVSHGVLGRCFIEVENGFKGNSFPVIIADETICKELRPLESEFDEEEKICD 704

Query: 543  VISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRG 602
             ISE   H +GRPRSREE LHFLNELGWLFQR+R S + +   YSL RFKF+L F+V+R 
Sbjct: 705  AISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPYYSLDRFKFVLTFAVERN 764

Query: 603  CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN 662
            CC LVK +LD+LV  +L  + LS  S+EML  IQLLNRAVK K   MVDLLIHYS+ S N
Sbjct: 765  CCMLVKTLLDVLVGKHLQGEWLSTGSVEMLNAIQLLNRAVKGKYVGMVDLLIHYSIPSKN 824

Query: 663  DTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSP 722
             T +KY+FPPNL GPGGITPLHLAA TS S+ ++D+LT+DPQEIG   W S++DA+G +P
Sbjct: 825  GTSRKYVFPPNLEGPGGITPLHLAAGTSGSESVVDSLTSDPQEIGLKCWESLVDANGQTP 884

Query: 723  YSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKSC 782
            ++YA+M+NN +YN LVA KLADRR G++++ +   IEQ  L  E     S+  K+   SC
Sbjct: 885  HAYAMMRNNDSYNALVAHKLADRRRGEISVTIENAIEQQSLRVELKEKQSNLVKRGQSSC 944

Query: 783  TKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENL 842
             KCA A  + N+RV GS GLL+RP+I+SMLA+AAVCVCVC+F RG P +G VAPF WENL
Sbjct: 945  AKCANAEFRFNRRVPGSHGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENL 1004

Query: 843  DFG 845
            D+G
Sbjct: 1005 DYG 1007

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438813|ref|XP_003589683.1| Squamosa promoter binding-like protein [Medicago truncatula] gi|355478731|gb|AES59934.1| Squamosa promoter binding-like protein [Medicago truncatula]

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/848 (56%), Positives = 600/848 (70%), Gaps = 51/848 (6%)

Query: 11   NNPTANVDIVNLLTALAR-AQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKL 69
            N   AN++I NLLTA+A  +QGK E+R    S VPD+EQL+ IL++I   PLPADL AKL
Sbjct: 192  NQVAANLEIFNLLTAIADGSQGKFEERR---SQVPDKEQLVQILNRI---PLPADLTAKL 245

Query: 70   ----HNFGSLNRKTPVHTSTDVQNR---LNENTSSPSTMDLLAVLSSTLTAPSPDTLAAH 122
                +N  + N    + TS    +R   LN    +P T D LAVLS+T + P+ +     
Sbjct: 246  LDVGNNLNAKNDNVQMETSPSYHHRDDQLNNAPPAPLTKDFLAVLSTTPSTPARNGGNGS 305

Query: 123  SQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETR 182
            +  + H                                ERSS S QSP +DSD Q ++ R
Sbjct: 306  TSSADHMR------------------------------ERSSGSSQSPNDDSDCQ-EDVR 334

Query: 183  VNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQTFFPMQSTSETV 241
            V LPLQLF SSPE+DSP KL SSRKYFSS+SSNP++ER+PSSSP VV+  F +Q      
Sbjct: 335  VKLPLQLFGSSPENDSPSKLPSSRKYFSSESSNPVDERTPSSSPPVVEMNFGLQGGIRGF 394

Query: 242  KSEKLSIGREVNANVEGNRSRG-SIMPLELFRGS---NKAADNCSFQSFPYQAGYTSSSG 297
             S  +S G   NAN E ++S   + +PL+LF+GS   N    + S QS P++AGY +SSG
Sbjct: 395  NSNCISTGFGGNANKETSQSHSCTTIPLDLFKGSKSNNMIQQSSSVQSVPFKAGY-ASSG 453

Query: 298  SDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVI 357
            SD+SP SLNSD QD TGRI+FKLFDK PS FPGTLR +IYNWLS  PS++ESYIRPGCV+
Sbjct: 454  SDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVV 513

Query: 358  LSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCK 417
            LS+Y SM  A W QLE N LQR++SL+ +SDSDFWRN RFLV++G QLASHKDG IR+CK
Sbjct: 514  LSIYASMSSAAWVQLEENFLQRVDSLIHNSDSDFWRNGRFLVYSGSQLASHKDGRIRMCK 573

Query: 418  SWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQG 477
             W TW SPELISVSPLA+VGGQE S  L+GRNL+  GTKIHCT    Y S EV  S   G
Sbjct: 574  PWGTWRSPELISVSPLAIVGGQETSISLKGRNLSAPGTKIHCTGADCYTSSEVIGSGDPG 633

Query: 478  SIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAE 537
             +YDEI L+G ++Q+TSPSVLGR FIEVENGFKGNSFPVIIA+A+ICKEL  LESEF  E
Sbjct: 634  MVYDEIKLSGFEVQNTSPSVLGRCFIEVENGFKGNSFPVIIANASICKELRPLESEFDEE 693

Query: 538  AKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVF 597
             K+CD ISE   H +GRP+SR+E LHFLNELGWLFQR+R S++ +  DYSL RFKF+L F
Sbjct: 694  EKMCDAISEEHEHHFGRPKSRDEALHFLNELGWLFQRERFSNVHEVPDYSLDRFKFVLTF 753

Query: 598  SVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYS 657
            SV+R CC LVK +LD+LV+ +   +GLS  S+EML  IQLLNRAVK KC  MVDLLI+YS
Sbjct: 754  SVERNCCMLVKTLLDMLVDKHFEGEGLSTGSVEMLKAIQLLNRAVKRKCTSMVDLLINYS 813

Query: 658  LTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA 717
            +TS NDT +KY+FPPNL GPGGITPLHLAA T+DS+ +ID+LTNDPQEIG   W ++ D 
Sbjct: 814  ITSKNDTSKKYVFPPNLEGPGGITPLHLAASTTDSEGVIDSLTNDPQEIGLKCWETLADE 873

Query: 718  SGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQ 777
            +G +P++YA+M+NNH+YN LVARK +DR+  +V++ +  EIE   L  E +    +Q K+
Sbjct: 874  NGQTPHAYAMMRNNHSYNMLVARKCSDRQRSEVSVRIDNEIEHPSLGIELMQKRINQVKR 933

Query: 778  RGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPF 837
             G SC+KCA+A  +  +R  GS+  L+ P+IHSMLA+AAVCVCVC+  RG+P +G V+PF
Sbjct: 934  VGDSCSKCAIAEVRAKRRFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPYVGSVSPF 993

Query: 838  KWENLDFG 845
            +WENL++G
Sbjct: 994  RWENLNYG 1001

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845078|ref|XP_002890420.1| hypothetical protein ARALYDRAFT_472338 [Arabidopsis lyrata subsp. lyrata] gi|297336262|gb|EFH66679.1| hypothetical protein ARALYDRAFT_472338 [Arabidopsis lyrata subsp. lyrata]

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/831 (57%), Positives = 607/831 (73%), Gaps = 22/831 (2%)

Query: 17   VDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLN 76
            +D++ LLTALA AQGK   +     +VPDREQLL IL+KIN+LPLP DL +KL+N GSL 
Sbjct: 228  MDLMALLTALACAQGKNAVKPAGSPAVPDREQLLQILNKINALPLPMDLVSKLNNIGSLA 287

Query: 77   RKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTK 136
            RK   H + + QN +N   +SPSTMDLLAVLS+TL + SPD LA  SQ    + DSEKTK
Sbjct: 288  RKNMDHPTVNPQNDMN--GASPSTMDLLAVLSTTLGSSSPDALAILSQGGFGNKDSEKTK 345

Query: 137  STCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPED 196
             +  E      L++ T  F SVGGERSS+S QSP +DSD + Q+TR +L LQLF+SSPED
Sbjct: 346  LSSYEHGVTTNLEKRTFGFSSVGGERSSSSNQSPSQDSDSRGQDTRSSLSLQLFTSSPED 405

Query: 197  DSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANV 256
            +S P ++SSRKY+SS SSNP E+RSPSSSPV+Q  FP+Q++ ET++S+          N 
Sbjct: 406  ESRPTVASSRKYYSSASSNPAEDRSPSSSPVMQELFPLQTSPETMRSK----------NH 455

Query: 257  EGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRI 316
                 R   +PLELF  SN+ A N +F+ F  Q+GY +SSGSD+SP SLNSDAQD TG+I
Sbjct: 456  NNTSPRTGCLPLELFGASNRGAANPNFKGFRQQSGY-ASSGSDYSPPSLNSDAQDRTGKI 514

Query: 317  IFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNL 376
            +FKL DKDPSQ PGTLR EIYNWLSN PSEMESYIRPGCV+LS+YV+M  A WEQLE NL
Sbjct: 515  VFKLLDKDPSQLPGTLRSEIYNWLSNIPSEMESYIRPGCVVLSVYVAMSPAAWEQLEQNL 574

Query: 377  LQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVV 436
            LQR+  L+Q+S SDFWRNARF+V+TG+QLASHK+G +R  KSWRTW+SPELISVSP+AVV
Sbjct: 575  LQRLGVLLQNSSSDFWRNARFIVNTGRQLASHKNGKVRCSKSWRTWNSPELISVSPVAVV 634

Query: 437  GGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPS 496
             G+E S  +RGR+LTN G  I CT MG Y S +VT + C+ +I+D++ +   K+Q+  P 
Sbjct: 635  AGEETSLVVRGRSLTNDGISIRCTHMGSYMSMDVTGAVCRQAIFDKLNVDSFKVQNVHPG 694

Query: 497  VLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPR 556
             LGR FIEVENGF+G+SFP+IIA+ +IC EL+ LE EF  +++  D+  E        P 
Sbjct: 695  FLGRCFIEVENGFRGDSFPLIIANESICNELNRLEEEFHPKSQ--DMTEEPAQSSNRGPT 752

Query: 557  SREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVE 616
            SREEVL FLNELGWLFQ+ + S   + SD+SL+RFKFLLV SV+R  CAL++ +LD+LVE
Sbjct: 753  SREEVLCFLNELGWLFQKNQTSEPREQSDFSLTRFKFLLVCSVERDYCALIRTLLDMLVE 812

Query: 617  GNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLT-SSNDTPQKYIFPPNLA 675
             NL  D L+RE+LEML EIQLLNRAVK K  +MV+LLIHYS+  S+  + +K++F PN  
Sbjct: 813  RNLVNDELNREALEMLAEIQLLNRAVKRKSTKMVELLIHYSVNPSALSSFKKFVFLPNRT 872

Query: 676  GPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYN 735
            GPGGITPLH+AACTS SDD+ID LTNDPQEIG SSWN++ DA+G +PYSYA M+NNH YN
Sbjct: 873  GPGGITPLHIAACTSGSDDMIDLLTNDPQEIGLSSWNTLCDATGQTPYSYAAMRNNHNYN 932

Query: 736  KLVARKLADRRNGQVTIPVGVEI-EQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNK 794
             LVARKLAD+RN QV++ +  EI +Q+GL+K     LSS+   +  +C  CA  A K  +
Sbjct: 933  SLVARKLADKRNRQVSLNIENEIVDQTGLSKR----LSSEM-NKSSTCASCATVALKYQR 987

Query: 795  RVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFG 845
            RV GS  L   P IHSMLA+A VCVCVC+F+   P +   + F W  LD+G
Sbjct: 988  RVSGSHRLFPTPIIHSMLAVATVCVCVCVFMHAFPIVRQGSHFSWGGLDYG 1038

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	847
TAIR|locus:2037355	1035	SPL14 "squamosa promoter bindi	0.968	0.792	0.541	2.2e-231
TAIR|locus:2011706	988	AT1G76580 [Arabidopsis thalian	0.958	0.821	0.507	1.4e-208
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.599	0.548	0.343	3.1e-79
TAIR|locus:2041329	881	SPL1 "squamosa promoter bindin	0.632	0.608	0.324	1.4e-78

TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 2232 (790.8 bits), Expect = 2.2e-231, P = 2.2e-231
 Identities = 457/844 (54%), Positives = 585/844 (69%)

Query:     6 HGNQSNNPTANVDIVNLLTALARAQGKTEDRS-ISCSSVPDREQLLMILSKINSLPLPAD 64
             H   +N   AN+D++ LLTALA AQGK   +  +   +VPDREQLL IL+KIN+LPLP D
Sbjct:   210 HDTTNNTANANMDLMALLTALACAQGKNAVKPPVGSPAVPDREQLLQILNKINALPLPMD 269

Query:    65 LAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHXX 124
             L +KL+N GSL RK   H + + QN +N   +SPSTMDLLAVLS+TL + SPD LA    
Sbjct:   270 LVSKLNNIGSLARKNMDHPTVNPQNDMNG--ASPSTMDLLAVLSTTLGSSSPDALAILSQ 327

Query:   125 XXXXXXXXXXXXXXCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVN 184
                             E      L++ T  F SVGGERSS+S QSP +DSD + Q+TR +
Sbjct:   328 GGFGNKDSEKTKLSSYENGVTTNLEKRTFGFSSVGGERSSSSNQSPSQDSDSRGQDTRSS 387

Query:   185 LPLQLFSSSPEDDSPPKLXXXXXXXXXXXXNPIEERSPSSSPVVQTFFPMQSTSETVKSE 244
             L LQLF+SSPED+S P +            NP+E+RSPSSSPV+Q  FP+Q++ ET++S+
Sbjct:   388 LSLQLFTSSPEDESRPTVASSRKYYSSASSNPVEDRSPSSSPVMQELFPLQASPETMRSK 447

Query:   245 KLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTXXXXXXXXXXX 304
                       N + +  R   +PLELF  SN+ A + +F+ F  Q+GY            
Sbjct:   448 ----------NHKNSSPRTGCLPLELFGASNRGAADPNFKGFGQQSGYASSGSDYSPPSL 497

Query:   305 XXXDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSM 364
                DAQD TG+I+FKL DKDPSQ PGTLR EIYNWLSN PSEMESYIRPGCV+LS+YV+M
Sbjct:   498 NS-DAQDRTGKIVFKLLDKDPSQLPGTLRSEIYNWLSNIPSEMESYIRPGCVVLSVYVAM 556

Query:   365 PYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSS 424
               A WEQLE  LLQR+  L+Q+S SDFWRNARF+V+TG+QLASHK+G +R  KSWRTW+S
Sbjct:   557 SPAAWEQLEQKLLQRLGVLLQNSPSDFWRNARFIVNTGRQLASHKNGKVRCSKSWRTWNS 616

Query:   425 PELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEII 484
             PELISVSP+AVV G+E S  +RGR+LTN G  I CT MG Y + EVT + C+ +I+DE+ 
Sbjct:   617 PELISVSPVAVVAGEETSLVVRGRSLTNDGISIRCTHMGSYMAMEVTRAVCRQTIFDELN 676

Query:   485 LAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVI 544
             +   K+Q+  P  LGR FIEVENGF+G+SFP+IIA+A+ICKEL+ L  EF  +++  D+ 
Sbjct:   677 VNSFKVQNVHPGFLGRCFIEVENGFRGDSFPLIIANASICKELNRLGEEFHPKSQ--DM- 733

Query:   545 SEHQAHEYGR-PRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGC 603
             +E QA    R P SREEVL FLNELGWLFQ+ + S + + SD+SL+RFKFLLV SV+R  
Sbjct:   734 TEEQAQSSNRGPTSREEVLCFLNELGWLFQKNQTSELREQSDFSLARFKFLLVCSVERDY 793

Query:   604 CALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN- 662
             CAL++ +LD+LVE NL  D L+RE+L+ML EIQLLNRAVK K  +MV+LLIHY +     
Sbjct:   794 CALIRTLLDMLVERNLVNDELNREALDMLAEIQLLNRAVKRKSTKMVELLIHYLVNPLTL 853

Query:   663 DTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSP 722
              + +K++F PN+ GPGGITPLHLAACTS SDD+ID LTNDPQEIG SSWN++ DA+G +P
Sbjct:   854 SSSRKFVFLPNITGPGGITPLHLAACTSGSDDMIDLLTNDPQEIGLSSWNTLRDATGQTP 913

Query:   723 YSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEI-EQSGLAKEQVHGLSSQFKQRGKS 781
             YSYA ++NNH YN LVARKLAD+RN QV++ +  E+ +Q+GL+K     LS +  +   S
Sbjct:   914 YSYAAIRNNHNYNSLVARKLADKRNKQVSLNIEHEVVDQTGLSKR----LSLEMNKSSSS 969

Query:   782 CTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWEN 841
             C  CA  A K  +RV GSQ L   P IHSMLA+A VCVCVC+F+   P +   + F W  
Sbjct:   970 CASCATVALKYQRRVSGSQRLFPTPIIHSMLAVATVCVCVCVFMHAFPIVRQGSHFSWGG 1029

Query:   842 LDFG 845
             LD+G
Sbjct:  1030 LDYG 1033

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)]

 Score = 2017 (715.1 bits), Expect = 1.4e-208, P = 1.4e-208
 Identities = 431/850 (50%), Positives = 570/850 (67%)

Query:     3 IHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLP 62
             +    N SNN   N+D++ LLTAL  AQG+ E  +     VP REQLL IL+KI +LPLP
Sbjct:   168 LENRDNTSNN--TNMDVMALLTALVCAQGRNEATTNGSPGVPQREQLLQILNKIKALPLP 225

Query:    63 ADLAAKLHNFGSLNRKTPVHTST-DVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLA- 120
              +L +KL+N G L RK P   S  + QN +N   SSPSTMDLLA LS++L + +P+ +A 
Sbjct:   226 MNLTSKLNNIGILARKNPEQPSPMNPQNSMN-GASSPSTMDLLAALSASLGSSAPEAIAF 284

Query:   121 -AHXXXXXXXXXXXXXXXXCPEQATPNFLKRTTMDFPSVGG-ERSSTSYQSPVEDSDGQN 178
              +                     AT + L++ T++FPS GG ER+S++  SP + SD + 
Sbjct:   285 LSQGGFGNKESNDRTKLTSSDHSATTS-LEKKTLEFPSFGGGERTSSTNHSPSQYSDSRG 343

Query:   179 QETRVNLPLQLFSSSPEDDSPPKLXXXXXXXXXXXXNPIEERSPSSSPVVQTFFPMQSTS 238
             Q+TR +L LQLF+SSPE++S PK+            NP+E+RSPSSSPV+Q  FP+ ++ 
Sbjct:   344 QDTRSSLSLQLFTSSPEEESRPKVASSTKYYSSASSNPVEDRSPSSSPVMQELFPLHTSP 403

Query:   239 ETVKSEKLSIGREVNANVEGNRS-RGSIMPLELFRGSNKAAD-NCSFQSFPYQAGYTXXX 296
             ET         R  N   + + S R S +PLELF  SN+ A  N ++    +Q+GY    
Sbjct:   404 ET---------RRYNNYKDTSTSPRTSCLPLELFGASNRGATANPNYNVLRHQSGYASSG 454

Query:   297 XXXXXXXXXXXDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCV 356
                        +AQ+ TG+I FKLF+KDPSQ P TLR EI+ WLS+ PS+MES+IRPGCV
Sbjct:   455 SDYSPPSLNS-NAQERTGKISFKLFEKDPSQLPNTLRTEIFRWLSSFPSDMESFIRPGCV 513

Query:   357 ILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVC 416
             ILS+YV+M  + WEQLE NLLQR+ SLVQDS+  FW N+RFLV+ G+QLASHK G IR+ 
Sbjct:   514 ILSVYVAMSASAWEQLEENLLQRVRSLVQDSE--FWSNSRFLVNAGRQLASHKHGRIRLS 571

Query:   417 KSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQ 476
             KSWRT + PELI+VSPLAVV G+E +  +RGRNLTN G ++ C  MG YAS EVT    +
Sbjct:   572 KSWRTLNLPELITVSPLAVVAGEETALIVRGRNLTNDGMRLRCAHMGNYASMEVTGREHR 631

Query:   477 GSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGA 536
              +  DE+ ++  ++Q  S   LGR FIE+ENG +G++FP+IIA+ATICKEL+ LE EF  
Sbjct:   632 LTKVDELNVSSFQVQSASSVSLGRCFIELENGLRGDNFPLIIANATICKELNRLEEEFHP 691

Query:   537 EAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLV 596
             +    DVI E Q     RPRSREEVL FLNELGWLFQRK  S I    D+SL RFKFLLV
Sbjct:   692 K----DVIEE-QIQNLDRPRSREEVLCFLNELGWLFQRKWTSDIHGEPDFSLPRFKFLLV 746

Query:   597 FSVDRGCCALVKAILDILVEGNLSMDGL-SRESLEMLWEIQLLNRAVKMKCRRMVDLLIH 655
              SV+R  C+L++ +LD++VE NL  DGL ++ESL+ML +IQLLNRA+K +  +M + LIH
Sbjct:   747 CSVERDYCSLIRTVLDMMVERNLGKDGLLNKESLDMLADIQLLNRAIKRRNTKMAETLIH 806

Query:   656 YSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL 715
             YS+   N + + +IF P++AGPG ITPLHLAA TS SDD+IDALTNDPQEIG S WN+++
Sbjct:   807 YSV---NPSTRNFIFLPSIAGPGDITPLHLAASTSSSDDMIDALTNDPQEIGLSCWNTLV 863

Query:   716 DASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQF 775
             DA+G +P+SYA M++NH+YN LVARKLAD+RNGQ+++ +   I+Q GL+K     LSS+ 
Sbjct:   864 DATGQTPFSYAAMRDNHSYNTLVARKLADKRNGQISLNIENGIDQIGLSKR----LSSEL 919

Query:   776 KQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVA 835
             K   +SC  CA  A K  ++V GS+ L   P IHSMLA+A VCVCVC+F+   P +   +
Sbjct:   920 K---RSCNTCASVALKYQRKVSGSRRLFPTPIIHSMLAVATVCVCVCVFMHAFPMVRQGS 976

Query:   836 PFKWENLDFG 845
              F W  LD+G
Sbjct:   977 HFSWGGLDYG 986

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 3.1e-79, Sum P(3) = 3.1e-79
 Identities = 192/559 (34%), Positives = 297/559 (53%)

Query:   308 DAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYA 367
             DAQ  T RI+FKLF K+P+ FP  LR +I NWL+++P++MESYIRPGC++L++Y+    A
Sbjct:   397 DAQSRTDRIVFKLFGKEPNDFPVALRGQILNWLAHTPTDMESYIRPGCIVLTIYLRQDEA 456

Query:   368 TWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSW--RTWSSP 425
             +WE+L  +L   +  L+  SD   W +    +    QLA   +G + +  S   R+    
Sbjct:   457 SWEELCCDLSFSLRRLLDLSDDPLWTDGWLYLRVQNQLAFAFNGQVVLDTSLPLRSHDYS 516

Query:   426 ELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQ--GSIYDEI 483
             ++I+V PLAV   ++  F ++G NL   GT++ CT  G +  QE T    +    + +  
Sbjct:   517 QIITVRPLAVT--KKAQFTVKGINLRRPGTRLLCTVEGTHLVQEATQGGMEERDDLKENN 574

Query:   484 ILAGLKIQDTSPSVLGRFFIEVEN--GFKGNSFPVIIA-DATICKELSLLESEFGAEAKV 540
              +  +      P   GR F+E+E+  G   + FP I++ D  IC E+  LES        
Sbjct:   575 EIDFVNFSCEMPIASGRGFMEIEDQGGLSSSFFPFIVSEDEDICSEIRRLESTL------ 628

Query:   541 CDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSD------YSLSRFKFL 594
                       E+    S  + + F++E+GWL  R    S +  SD      +SL RFKFL
Sbjct:   629 ----------EFTGTDSAMQAMDFIHEIGWLLHRSELKSRLAASDHNPEDLFSLIRFKFL 678

Query:   595 LVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLI 654
             + FS+DR  C ++K +L+IL E   ++D     +L    E+ LL+RAV+   + MV++L+
Sbjct:   679 IEFSMDREWCCVMKKLLNILFEEG-TVDPSPDAALS---ELCLLHRAVRKNSKPMVEMLL 734

Query:   655 HYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI 714
              +S    N T    +F P+ AGPGG+TPLH+AA    S+D++DALT DP   G  +W + 
Sbjct:   735 RFSPKKKNQTLAG-LFRPDAAGPGGLTPLHIAAGKDGSEDVLDALTEDPGMTGIQAWKNS 793

Query:   715 LDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQ----VTIPVGVEIEQSGLAKEQVHG 770
              D +G +P  YA ++ + +Y  LV RKL+ +   +    V IP    IE     +  +  
Sbjct:   794 RDNTGFTPEDYARLRGHFSYIHLVQRKLSRKPIAKEHVVVNIPESFNIEHKQEKRSPMDS 853

Query:   771 LSSQFKQRGKSCTKCAVAAAKLNKRV---RGSQGLLNRPYIHSMLAIAAVCVCVCLFLRG 827
              S +  Q  + C  C       +KRV      + +  RP + SM+AIAAVCVCV L  + 
Sbjct:   854 SSLEITQINQ-CKLCD------HKRVFVTTHHKSVAYRPAMLSMVAIAAVCVCVALLFKS 906

Query:   828 SPDIGLV-APFKWENLDFG 845
              P++  V  PF+WE L++G
Sbjct:   907 CPEVLYVFQPFRWELLEYG 925

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
 Identities = 186/574 (32%), Positives = 301/574 (52%)

Query:   284 QSFPYQAGYTXXXXXXXXXXXXXXDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNS 343
             QS P Q                  DAQ  TGRI+FKLF K+P++FP  LR +I +WLS+S
Sbjct:   332 QSSPPQTSRNSDSASDQSPSSSSEDAQMRTGRIVFKLFGKEPNEFPIVLRGQILDWLSHS 391

Query:   344 PSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGK 403
             P++MESYIRPGC++L++Y+      WE+L  +L   +  L+  SD   W      V    
Sbjct:   392 PTDMESYIRPGCIVLTIYLRQAETAWEELSDDLGFSLGKLLDLSDDPLWTTGWIYVRVQN 451

Query:   404 QLASHKDGNIRV--CKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTF 461
             QLA   +G + V    S ++     +ISV PLA+   ++  F ++G NL   GT++ C+ 
Sbjct:   452 QLAFVYNGQVVVDTSLSLKSRDYSHIISVKPLAIAATEKAQFTVKGMNLRQRGTRLLCSV 511

Query:   462 MGGYASQEVT--SSTCQGSIYDEI--ILAGLKIQDTSPSVLGRFFIEVEN-GFKGNSFP- 515
              G Y  QE T  S+T +   + +   I+  +      P + GR F+E+E+ G   + FP 
Sbjct:   512 EGKYLIQETTHDSTTREDDDFKDNSEIVECVNFSCDMPILSGRGFMEIEDQGLSSSFFPF 571

Query:   516 VIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQR- 574
             +++ D  +C E+ +LE+                  E+    S ++ + F++E+GWL  R 
Sbjct:   572 LVVEDDDVCSEIRILETTL----------------EFTGTDSAKQAMDFIHEIGWLLHRS 615

Query:   575 KRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWE 634
             K   S      + L RF++L+ FS+DR  CA+++ +L++  +G  ++   S  S   L E
Sbjct:   616 KLGESDPNPGVFPLIRFQWLIEFSMDREWCAVIRKLLNMFFDG--AVGEFSSSSNATLSE 673

Query:   635 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDD 694
             + LL+RAV+   + MV++L+ Y      ++    +F P+ AGP G+TPLH+AA    S+D
Sbjct:   674 LCLLHRAVRKNSKPMVEMLLRYIPKQQRNS----LFRPDAAGPAGLTPLHIAAGKDGSED 729

Query:   695 IIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPV 754
             ++DALT DP  +G  +W +  D++G +P  YA ++ + +Y  L+ RK+  +   +  + V
Sbjct:   730 VLDALTEDPAMVGIEAWKTCRDSTGFTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVV 789

Query:   755 GVEIEQSGLA-KEQVHG-LSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSML 812
              + +  S    KE   G ++S  +     C  C         R    + +  RP + SM+
Sbjct:   790 NIPVSFSDREQKEPKSGPMASALEITQIPCKLCDHKLVYGTTR----RSVAYRPAMLSMV 845

Query:   813 AIAAVCVCVCLFLRGSPDIGLV-APFKWENLDFG 845
             AIAAVCVCV L  +  P++  V  PF+WE LD+G
Sbjct:   846 AIAAVCVCVALLFKSCPEVLYVFQPFRWELLDYG 879

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RY95	SPL14_ARATH	No assigned EC number	0.5742	0.9634	0.7884	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_II000008 hypothetical protein (1044 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	847
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.82
PHA02791	284	ankyrin-like protein; Provisional	99.75
PHA02741	169	hypothetical protein; Provisional	99.74
PHA02875	413	ankyrin repeat protein; Provisional	99.73
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.73
PHA02743	166	Viral ankyrin protein; Provisional	99.72
PHA02791	284	ankyrin-like protein; Provisional	99.72
PHA02736	154	Viral ankyrin protein; Provisional	99.7
PHA02859	209	ankyrin repeat protein; Provisional	99.7
PHA02859	209	ankyrin repeat protein; Provisional	99.69
PHA02874	434	ankyrin repeat protein; Provisional	99.68
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.68
PHA02875	413	ankyrin repeat protein; Provisional	99.68
PHA02878	477	ankyrin repeat protein; Provisional	99.68
PHA02878	477	ankyrin repeat protein; Provisional	99.67
PHA02795	437	ankyrin-like protein; Provisional	99.67
PHA02874	434	ankyrin repeat protein; Provisional	99.65
PHA03100	480	ankyrin repeat protein; Provisional	99.63
PHA03100	480	ankyrin repeat protein; Provisional	99.63
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.62
PHA02989	494	ankyrin repeat protein; Provisional	99.62
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.6
PHA03095	471	ankyrin-like protein; Provisional	99.6
PHA02884	300	ankyrin repeat protein; Provisional	99.6
PHA02876	682	ankyrin repeat protein; Provisional	99.6
PHA02798	489	ankyrin-like protein; Provisional	99.58
KOG0510	929	consensus Ankyrin repeat protein [General function	99.58
PHA02876	682	ankyrin repeat protein; Provisional	99.58
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.58
PHA03095	471	ankyrin-like protein; Provisional	99.57
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.57
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.56
PHA02989	494	ankyrin repeat protein; Provisional	99.56
PHA02795	437	ankyrin-like protein; Provisional	99.56
PHA02946	446	ankyin-like protein; Provisional	99.56
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.56
PHA02946	446	ankyin-like protein; Provisional	99.56
KOG0510	929	consensus Ankyrin repeat protein [General function	99.54
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.54
PHA02798	489	ankyrin-like protein; Provisional	99.53
KOG0514	452	consensus Ankyrin repeat protein [General function	99.53
PHA02741	169	hypothetical protein; Provisional	99.51
PHA02917	661	ankyrin-like protein; Provisional	99.51
KOG0508	615	consensus Ankyrin repeat protein [General function	99.48
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.47
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.47
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.47
PHA02730	672	ankyrin-like protein; Provisional	99.45
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.43
PHA02730	672	ankyrin-like protein; Provisional	99.42
PHA02917	661	ankyrin-like protein; Provisional	99.41
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.4
PHA02743	166	Viral ankyrin protein; Provisional	99.4
PHA02884	300	ankyrin repeat protein; Provisional	99.39
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.39
KOG0514	452	consensus Ankyrin repeat protein [General function	99.39
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.39
KOG0508	615	consensus Ankyrin repeat protein [General function	99.39
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.37
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.37
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.36
PHA02792	631	ankyrin-like protein; Provisional	99.34
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.34
PHA02736	154	Viral ankyrin protein; Provisional	99.33
PHA02792	631	ankyrin-like protein; Provisional	99.33
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.33
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.33
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.28
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.21
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.17
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.17
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.15
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.13
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.09
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.09
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.03
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.99
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.98
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.97
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.97
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.94
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.92
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.91
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.9
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.88
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.57
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.5
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.46
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.41
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.23
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.22
KOG0522	560	consensus Ankyrin repeat protein [General function	98.15
PF13606	30	Ank_3: Ankyrin repeat	98.05
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.05
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.04
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	97.89
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.87
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.86
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.84
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.84
PF13606	30	Ank_3: Ankyrin repeat	97.78
KOG0522	560	consensus Ankyrin repeat protein [General function	97.77
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.55
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.45
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.44
KOG2384	223	consensus Major histocompatibility complex protein	97.06
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	96.76
KOG0521	785	consensus Putative GTPase activating proteins (GAP	96.74
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	96.7
KOG0511	516	consensus Ankyrin repeat protein [General function	96.26
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.2
KOG2505	591	consensus Ankyrin repeat protein [General function	95.14
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	94.78
KOG2505	591	consensus Ankyrin repeat protein [General function	94.56
KOG0511	516	consensus Ankyrin repeat protein [General function	94.55
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	94.32
KOG2384	223	consensus Major histocompatibility complex protein	92.54

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=8e-21  Score=190.08  Aligned_cols=128  Identities=20%  Similarity=0.139  Sum_probs=112.5

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCc
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHY-SLTSSNDTPQKY  668 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~-GA~~~~~s~~~~  668 (847)
                      -.|+||||||..|+.+++++||..   .++..++.     +. .||||||.|+..|+.++|+-|+.. |+          
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq---~nv~~ddk-----Dd-aGWtPlhia~s~g~~evVk~Ll~r~~a----------   97 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQ---PNVKPDDK-----DD-AGWTPLHIAASNGNDEVVKELLNRSGA----------   97 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhc---CCCCCCCc-----cc-cCCchhhhhhhcCcHHHHHHHhcCCCC----------
Confidence            357999999999999999999984   45555544     33 499999999999999999999988 77          


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          669 IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       669 l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                        |+|++..+|.|+|||||.+ +.-+|+.+|+++      ||.++++|..|+||||.||..|+.++|++|+..++..
T Consensus        98 --dvna~tn~G~T~LHyAagK-~r~eIaqlLle~------ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~  165 (226)
T KOG4412|consen   98 --DVNATTNGGQTCLHYAAGK-GRLEIAQLLLEK------GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPL  165 (226)
T ss_pred             --CcceecCCCcceehhhhcC-ChhhHHHHHHhc------CCCCcccccccCchhHHHHhccchhhHHHHHhcCCCC
Confidence              7899999999999999996 455699999998      4779999999999999999999999999999877654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.75  E-value=1.4e-17  Score=178.47  Aligned_cols=122  Identities=17%  Similarity=0.093  Sum_probs=60.8

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      +++||+|+..|+.++++.|+...    .+++..     +. .|+||||+|+..|+.++|++|+++|+            +
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~G----advn~~-----d~-~G~TpLh~Aa~~g~~eivk~Ll~~ga------------d  119 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSG----MDDSQF-----DD-KGNTALYYAVDSGNMQTVKLFVKKNW------------R  119 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHCCC------------C
Confidence            35555555555555555555432    222211     11 35555555555555555555555554            3


Q ss_pred             CCCCCCCCC-hHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          672 PNLAGPGGI-TPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD-ASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       672 ~na~d~~G~-TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD-~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      +|.++..|+ ||||+||.. +..+++++|+++    |.    +..| ..|.||||+|+++|+.+++++|++++++
T Consensus       120 in~~~~~g~~TpL~~Aa~~-g~~eivk~LL~~----~~----~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd  185 (284)
T PHA02791        120 LMFYGKTGWKTSFYHAVML-NDVSIVSYFLSE----IP----STFDLAILLSCIHITIKNGHVDMMILLLDYMTS  185 (284)
T ss_pred             cCccCCCCCcHHHHHHHHc-CCHHHHHHHHhc----CC----cccccccCccHHHHHHHcCCHHHHHHHHHCCCC
Confidence            445555553 566666553 344555555554    10    1112 2355666666666666666666665554

>PHA02741 hypothetical protein; Provisional

Probab=99.74  E-value=1.2e-17  Score=164.25  Aligned_cols=131  Identities=18%  Similarity=0.199  Sum_probs=107.7

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHH--hccccCCCCcHHHHhhccCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILV--EGNLSMDGLSRESLEMLWEIQLLNRAVKMKC----RRMVDLLIHYSLTSSNDT  664 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~--~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~----~eIVeLLL~~GA~~~~~s  664 (847)
                      .+++||+|+..|+.++++.|+..+.  ..+.+++..     +. .|.||||+|+..|+    .+++++|+++|+      
T Consensus        21 g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-----d~-~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga------   88 (169)
T PHA02741         21 GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-----DD-AGQMCIHIAAEKHEAQLAAEIIDHLIELGA------   88 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-----CC-CCCcHHHHHHHcCChHHHHHHHHHHHHcCC------
Confidence            4589999999999999999987531  111222211     33 58999999999999    589999999998      


Q ss_pred             CCCcCCCCCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 003109          665 PQKYIFPPNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA  743 (847)
Q Consensus       665 ~~~~l~d~na~d~-~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a  743 (847)
                            ++|.++. .|.||||+|+.. +..+++++|+..+     +++++.+|.+|+||||+|+..|+.+++++|+++.+
T Consensus        89 ------din~~~~~~g~TpLh~A~~~-~~~~iv~~Ll~~~-----g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         89 ------DINAQEMLEGDTALHLAAHR-RDHDLAEWLCCQP-----GIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             ------CCCCCCcCCCCCHHHHHHHc-CCHHHHHHHHhCC-----CCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence                  5688885 899999999985 6778999998642     46899999999999999999999999999999876


Q ss_pred             cc
Q 003109          744 DR  745 (847)
Q Consensus       744 ~~  745 (847)
                      ..
T Consensus       157 ~~  158 (169)
T PHA02741        157 TS  158 (169)
T ss_pred             Hh
Confidence            54

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.73  E-value=3.5e-17  Score=179.97  Aligned_cols=93  Identities=23%  Similarity=0.246  Sum_probs=53.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  713 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vn  713 (847)
                      |.||||+|++.|+.++|++|+++|+            ++|.+|..|.||||+|+.. |..+++++|+++      ||+++
T Consensus       135 g~tpLh~A~~~~~~~~v~~Ll~~g~------------~~~~~d~~g~TpL~~A~~~-g~~eiv~~Ll~~------ga~~n  195 (413)
T PHA02875        135 KFSPLHLAVMMGDIKGIELLIDHKA------------CLDIEDCCGCTPLIIAMAK-GDIAICKMLLDS------GANID  195 (413)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCC------------CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhC------CCCCC
Confidence            4455555555555555555555544            4456666666666666653 445566666665      34566


Q ss_pred             cCCCCCC-CHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          714 ILDASGH-SPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       714 arD~~G~-TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ..|..|. ||+|+|+.+|+.+++++|++++++-
T Consensus       196 ~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        196 YFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             cCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            6666553 5666666666666666666666554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=8.3e-18  Score=168.65  Aligned_cols=128  Identities=21%  Similarity=0.177  Sum_probs=113.2

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      -.++|||.|+..|.-+||+.|++.   .++|.+..      ..+|.|+||+|+..|..+|+.+||++|+           
T Consensus        71 aGWtPlhia~s~g~~evVk~Ll~r---~~advna~------tn~G~T~LHyAagK~r~eIaqlLle~ga-----------  130 (226)
T KOG4412|consen   71 AGWTPLHIAASNGNDEVVKELLNR---SGADVNAT------TNGGQTCLHYAAGKGRLEIAQLLLEKGA-----------  130 (226)
T ss_pred             cCCchhhhhhhcCcHHHHHHHhcC---CCCCccee------cCCCcceehhhhcCChhhHHHHHHhcCC-----------
Confidence            357999999999999999999996   24555433      2379999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                       .++++|..|.||||-||.. |.-.++++|+..      +|-+|..|+.|+||||.|..-||.++..+|++++++.
T Consensus       131 -~i~~kD~~~qtplHRAAav-Gklkvie~Li~~------~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~  198 (226)
T KOG4412|consen  131 -LIRIKDKQGQTPLHRAAAV-GKLKVIEYLISQ------GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADT  198 (226)
T ss_pred             -CCcccccccCchhHHHHhc-cchhhHHHHHhc------CCCCCcccccCccHHHHHHhccCchHHHHHHHhccce
Confidence             5799999999999999996 566799999986      4679999999999999998889999999999999887

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.72  E-value=4.7e-17  Score=160.18  Aligned_cols=129  Identities=12%  Similarity=0.070  Sum_probs=105.6

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHH---HHHHHHHcCCCCCCCCCCCc
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRR---MVDLLIHYSLTSSNDTPQKY  668 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~e---IVeLLL~~GA~~~~~s~~~~  668 (847)
                      ++.||.|+..|....++.++..+...+..++..     +. .|+||||+|+..|+.+   +|++|+++|+          
T Consensus        21 ~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~-----d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga----------   84 (166)
T PHA02743         21 QNTFLRICRTGNIYELMEVAPFISGDGHLLHRY-----DH-HGRQCTHMVAWYDRANAVMKIELLVNMGA----------   84 (166)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHhhcchhhhcc-----CC-CCCcHHHHHHHhCccCHHHHHHHHHHcCC----------
Confidence            578999999999876666666554433333211     22 5899999999998865   4899999998          


Q ss_pred             CCCCCCCC-CCCChHHHHHHhcCCcHHHHHHHhC-CCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          669 IFPPNLAG-PGGITPLHLAACTSDSDDIIDALTN-DPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       669 l~d~na~d-~~G~TPLHlAA~~~g~e~VveLLL~-~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                        ++|.++ ..|.||||+|+.. +..+++++|+. .      +++++.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus        85 --din~~d~~~g~TpLh~A~~~-g~~~iv~~Ll~~~------gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  154 (166)
T PHA02743         85 --DINARELGTGNTLLHIAAST-KNYELAEWLCRQL------GVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC  154 (166)
T ss_pred             --CCCCCCCCCCCcHHHHHHHh-CCHHHHHHHHhcc------CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence              578888 5899999999985 66789999985 4      5789999999999999999999999999999998887

>PHA02791 ankyrin-like protein; Provisional

Probab=99.72  E-value=3.9e-17  Score=175.05  Aligned_cols=127  Identities=12%  Similarity=0.022  Sum_probs=105.9

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+..|+.++++.|++..    ++++..     +..++.||||+||..|+.+||++||+++++.         
T Consensus        93 ~G~TpLh~Aa~~g~~eivk~Ll~~g----adin~~-----~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---------  154 (284)
T PHA02791         93 KGNTALYYAVDSGNMQTVKLFVKKN----WRLMFY-----GKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---------  154 (284)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCC----CCcCcc-----CCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---------
Confidence            3569999999999999999999853    344322     2222359999999999999999999997621         


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCH-HHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSP-YSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TP-LHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                        .|.  ..|.||||+||.. |+.+++++|+++      ||++|.+|..|.|| ||+|+.+|+.+++++|++++++.
T Consensus       155 --~d~--~~g~TpLh~Aa~~-g~~eiv~lLL~~------gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        155 --FDL--AILLSCIHITIKN-GHVDMMILLLDY------MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             --ccc--ccCccHHHHHHHc-CCHHHHHHHHHC------CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence              111  2589999999985 788899999998      57899999999987 99999999999999999999887

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.70  E-value=4.8e-17  Score=156.48  Aligned_cols=132  Identities=17%  Similarity=0.120  Sum_probs=99.7

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCH---HHHHHHHHcCCCCCCCCCCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCR---RMVDLLIHYSLTSSNDTPQK  667 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~---eIVeLLL~~GA~~~~~s~~~  667 (847)
                      ..+|||+|+..|+  ++..|......  .+.+...-...+. .|.||||+||+.|+.   +++++|+++|+         
T Consensus        17 g~tpLh~A~~~g~--~~~l~~~~~~~--~~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga---------   82 (154)
T PHA02736         17 GENILHYLCRNGG--VTDLLAFKNAI--SDENRYLVLEYNR-HGKQCVHIVSNPDKADPQEKLKLLMEWGA---------   82 (154)
T ss_pred             CCCHHHHHHHhCC--HHHHHHHHHHh--cchhHHHHHHhcC-CCCEEEEeecccCchhHHHHHHHHHHcCC---------
Confidence            4699999999997  33333322111  1100000011122 589999999999987   46899999998         


Q ss_pred             cCCCCCCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          668 YIFPPNLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       668 ~l~d~na~d-~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                         ++|.++ ..|.||||+|+.. +..+++++|+.+.     +++++.+|..|+||||+|+..|+.+++++|++++++.
T Consensus        83 ---din~~~~~~g~T~Lh~A~~~-~~~~i~~~Ll~~~-----g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         83 ---DINGKERVFGNTPLHIAVYT-QNYELATWLCNQP-----GVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ---CccccCCCCCCcHHHHHHHh-CCHHHHHHHHhCC-----CCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence               568887 5999999999985 6778999998742     4689999999999999999999999999999988763

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.70  E-value=1.4e-16  Score=162.32  Aligned_cols=128  Identities=10%  Similarity=0.095  Sum_probs=94.7

Q ss_pred             hhHHHHHHHhcC--chhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCC
Q 003109          591 FKFLLVFSVDRG--CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM---KCRRMVDLLIHYSLTSSNDTP  665 (847)
Q Consensus       591 ~k~LL~FAvdrG--w~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~---g~~eIVeLLL~~GA~~~~~s~  665 (847)
                      ..+|||+|+.++  +.++++.|++..    .+++..     +...|.||||+|+..   ++.+||++|+++|+       
T Consensus        51 g~TpLh~a~~~~~~~~eiv~~Ll~~g----advn~~-----~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~ga-------  114 (209)
T PHA02859         51 YETPIFSCLEKDKVNVEILKFLIENG----ADVNFK-----TRDNNLSALHHYLSFNKNVEPEILKILIDSGS-------  114 (209)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHCC----CCCCcc-----CCCCCCCHHHHHHHhCccccHHHHHHHHHCCC-------
Confidence            358888888754  778888888853    344322     222478888888753   46888888888887       


Q ss_pred             CCcCCCCCCCCCCCChHHHHHHhc-CCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHH-HHHcCCHHHHHHHHHhhc
Q 003109          666 QKYIFPPNLAGPGGITPLHLAACT-SDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSY-ALMKNNHAYNKLVARKLA  743 (847)
Q Consensus       666 ~~~l~d~na~d~~G~TPLHlAA~~-~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHy-Aa~~G~~eiIeLLl~K~a  743 (847)
                           ++|.+|..|.||||+|+.. .+..+++++|+++      |++++.+|.+|.||||. |+.+|+.+++++|+++++
T Consensus       115 -----din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~------gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga  183 (209)
T PHA02859        115 -----SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS------GVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGI  183 (209)
T ss_pred             -----CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc------CCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCC
Confidence                 5688888888888888653 3567788888877      56788888888888884 566788888888888776


Q ss_pred             cc
Q 003109          744 DR  745 (847)
Q Consensus       744 ~~  745 (847)
                      +-
T Consensus       184 di  185 (209)
T PHA02859        184 DI  185 (209)
T ss_pred             CC
Confidence            54

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.69  E-value=1.6e-16  Score=161.95  Aligned_cols=125  Identities=14%  Similarity=0.108  Sum_probs=105.3

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK--CRRMVDLLIHYSLTSSNDTPQK  667 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g--~~eIVeLLL~~GA~~~~~s~~~  667 (847)
                      +..+||+.|+..|..++|+.|+...       +..     +. .|.||||+|+.++  +.++|++||++|+         
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~~-------n~~-----~~-~g~TpLh~a~~~~~~~~eiv~~Ll~~ga---------   77 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKFV-------NDC-----ND-LYETPIFSCLEKDKVNVEILKFLIENGA---------   77 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHhh-------hcc-----Cc-cCCCHHHHHHHcCCCCHHHHHHHHHCCC---------
Confidence            4469999999999999999998742       111     22 4899999999854  8999999999998         


Q ss_pred             cCCCCCCCC-CCCChHHHHHHhcC--CcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHH--cCCHHHHHHHHHhh
Q 003109          668 YIFPPNLAG-PGGITPLHLAACTS--DSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALM--KNNHAYNKLVARKL  742 (847)
Q Consensus       668 ~l~d~na~d-~~G~TPLHlAA~~~--g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~--~G~~eiIeLLl~K~  742 (847)
                         ++|.++ ..|+||||+|+...  +..+++++|+++      ||++|.+|.+|.||||+|+.  .++.+++++|++++
T Consensus        78 ---dvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~------gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g  148 (209)
T PHA02859         78 ---DVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS------GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG  148 (209)
T ss_pred             ---CCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC
Confidence               578886 58999999998643  367899999988      57899999999999999976  57899999999998


Q ss_pred             ccc
Q 003109          743 ADR  745 (847)
Q Consensus       743 a~~  745 (847)
                      ++.
T Consensus       149 adi  151 (209)
T PHA02859        149 VSF  151 (209)
T ss_pred             CCc
Confidence            775

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.68  E-value=4.4e-16  Score=173.25  Aligned_cols=130  Identities=21%  Similarity=0.270  Sum_probs=110.3

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHh-------------------ccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHH
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVE-------------------GNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVD  651 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~-------------------g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVe  651 (847)
                      ..++||.|+..|+.++++.|++..++                   .+++++..     +. .|.||||+|++.|+.++|+
T Consensus        68 ~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~-----~~-~g~T~Lh~A~~~~~~~~v~  141 (434)
T PHA02874         68 IPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIK-----DA-ELKTFLHYAIKKGDLESIK  141 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCC-----CC-CCccHHHHHHHCCCHHHHH
Confidence            35899999999999999999985321                   12222211     12 5889999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCC
Q 003109          652 LLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNN  731 (847)
Q Consensus       652 LLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~  731 (847)
                      +|+++|+            ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+..|+
T Consensus       142 ~Ll~~ga------------d~n~~d~~g~tpLh~A~~~-~~~~iv~~Ll~~------g~~~n~~~~~g~tpL~~A~~~g~  202 (434)
T PHA02874        142 MLFEYGA------------DVNIEDDNGCYPIHIAIKH-NFFDIIKLLLEK------GAYANVKDNNGESPLHNAAEYGD  202 (434)
T ss_pred             HHHhCCC------------CCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCC
Confidence            9999998            5788999999999999985 678899999988      56789999999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 003109          732 HAYNKLVARKLADR  745 (847)
Q Consensus       732 ~eiIeLLl~K~a~~  745 (847)
                      .+++++|++++++-
T Consensus       203 ~~iv~~Ll~~g~~i  216 (434)
T PHA02874        203 YACIKLLIDHGNHI  216 (434)
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999999998764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.68  E-value=6.3e-17  Score=184.76  Aligned_cols=149  Identities=19%  Similarity=0.167  Sum_probs=96.4

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCC----
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS--NDTPQ----  666 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~--~~s~~----  666 (847)
                      ++||||+-++..+|+|+|+...    .+++..     .-.-+-||||||+++|+..||++||++||+..  |..+.    
T Consensus        80 tlLHWAAiNNrl~v~r~li~~g----advn~~-----gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lH  150 (600)
T KOG0509|consen   80 TLLHWAAINNRLDVARYLISHG----ADVNAI-----GGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLH  150 (600)
T ss_pred             cceeHHHHcCcHHHHHHHHHcC----CCcccc-----CCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHH
Confidence            8999999999999999999964    344422     11126799999999999999999999999531  11110    


Q ss_pred             ---------------CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCC-CCCCCHHHHHHHcC
Q 003109          667 ---------------KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD-ASGHSPYSYALMKN  730 (847)
Q Consensus       667 ---------------~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD-~~G~TPLHyAa~~G  730 (847)
                                     ....++|.+|.+|+||||+||.++.... +.+|+.-      ++.++.+| +.|.||||+|+.+|
T Consensus       151 la~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~-v~~LL~f------~a~~~~~d~~~g~TpLHwa~~~g  223 (600)
T KOG0509|consen  151 LAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALF-VRRLLKF------GASLLLTDDNHGNTPLHWAVVGG  223 (600)
T ss_pred             HHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHH-HHHHHHh------cccccccccccCCchHHHHHhcC
Confidence                           0013667777777777777776543333 4445443      34455665 66777777777777


Q ss_pred             CHHHHHHHHHhhccc----cCCccccccCcc
Q 003109          731 NHAYNKLVARKLADR----RNGQVTIPVGVE  757 (847)
Q Consensus       731 ~~eiIeLLl~K~a~~----~~~~v~~~i~~~  757 (847)
                      |...+.+|++-+++-    .||....++..+
T Consensus       224 N~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  224 NLTAVKLLLEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             CcceEehhhhcCCcccccccCCCCHHHHHHH
Confidence            777776443332322    245555555543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.68  E-value=2.9e-16  Score=172.74  Aligned_cols=127  Identities=24%  Similarity=0.248  Sum_probs=110.3

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||.|+..|..++++.|++...    +....     ....|+||||+|+..|+.++|++|+++|+            
T Consensus        68 ~~t~L~~A~~~g~~~~v~~Ll~~~~----~~~~~-----~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga------------  126 (413)
T PHA02875         68 IESELHDAVEEGDVKAVEELLDLGK----FADDV-----FYKDGMTPLHLATILKKLDIMKLLIARGA------------  126 (413)
T ss_pred             cccHHHHHHHCCCHHHHHHHHHcCC----ccccc-----ccCCCCCHHHHHHHhCCHHHHHHHHhCCC------------
Confidence            4589999999999999999998632    11111     11248999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +++.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+..|+.+++++|++++++-
T Consensus       127 d~~~~~~~g~tpLh~A~~~-~~~~~v~~Ll~~------g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~  194 (413)
T PHA02875        127 DPDIPNTDKFSPLHLAVMM-GDIKGIELLIDH------KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI  194 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            6789999999999999985 677899999988      5679999999999999999999999999999998876

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.68  E-value=2.3e-16  Score=177.68  Aligned_cols=125  Identities=18%  Similarity=0.125  Sum_probs=103.5

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .++|||+|+..|+.++++.|++.+    ++++..     +. .|.||||.|++.|+.++|++|+++|+            
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~g----ad~n~~-----d~-~g~tpLh~A~~~~~~~iv~~Ll~~ga------------  225 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSYG----ANVNIP-----DK-TNNSPLHHAVKHYNKPIVHILLENGA------------  225 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHCC----CCCCCc-----CC-CCCCHHHHHHHhCCHHHHHHHHHcCC------------
Confidence            568999999999999999999853    344322     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCC-CCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA-SGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~-~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.+|..|.||||+|+...+..+++++|+++      ||++|++|. .|.||||+|  .++.+++++|++++++-
T Consensus       226 ~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~------gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi  293 (477)
T PHA02878        226 STDARDKCGNTPLHISVGYCKDYDILKLLLEH------GVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADI  293 (477)
T ss_pred             CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc------CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC
Confidence            57888899999999998755667799999887      567888876 799999998  46788889998888775

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.67  E-value=5.9e-16  Score=174.43  Aligned_cols=93  Identities=22%  Similarity=0.268  Sum_probs=86.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  713 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vn  713 (847)
                      |.||||+|+..|+.++|++||++|+            ++|.+|..|.||||+|+.. +..+++++|++.      |+++|
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~ga------------d~n~~d~~g~tpLh~A~~~-~~~~iv~~Ll~~------ga~in  228 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSYGA------------NVNIPDKTNNSPLHHAVKH-YNKPIVHILLEN------GASTD  228 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHCCC------------CCCCcCCCCCCHHHHHHHh-CCHHHHHHHHHc------CCCCC
Confidence            8999999999999999999999998            6789999999999999985 678899999987      57899


Q ss_pred             cCCCCCCCHHHHHHHc-CCHHHHHHHHHhhccc
Q 003109          714 ILDASGHSPYSYALMK-NNHAYNKLVARKLADR  745 (847)
Q Consensus       714 arD~~G~TPLHyAa~~-G~~eiIeLLl~K~a~~  745 (847)
                      .+|..|+||||+|+.+ ++.+++++|++++++-
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv  261 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV  261 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC
Confidence            9999999999999976 7999999999998875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.67  E-value=4e-16  Score=175.66  Aligned_cols=131  Identities=14%  Similarity=0.039  Sum_probs=107.6

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      .++||.|+..|+.++++.|+..++.    .............+.|++|.|+..++.++|++|+++||            +
T Consensus       150 ~t~lh~A~~~~~~eIVk~Lls~Ga~----~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA------------D  213 (437)
T PHA02795        150 LNAYFRGICKKESSVVEFILNCGIP----DENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE------------D  213 (437)
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCc----ccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC------------C
Confidence            4799999999999999999987431    11110000011137799999999999999999999998            6


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcC--------CHHHHHHHHHhhc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN--------NHAYNKLVARKLA  743 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G--------~~eiIeLLl~K~a  743 (847)
                      +|.+|..|.||||+||. .|+.+++++|+++      ||++|++|..|.||||+|+.+|        |.+++++|+++++
T Consensus       214 IN~kD~~G~TpLh~Aa~-~g~~eiVelLL~~------GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        214 INQLDAGGRTLLYRAIY-AGYIDLVSWLLEN------GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             cCcCCCCCCCHHHHHHH-cCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            79999999999999998 4788899999988      6789999999999999999998        4689999999887


Q ss_pred             cc
Q 003109          744 DR  745 (847)
Q Consensus       744 ~~  745 (847)
                      +-
T Consensus       287 dI  288 (437)
T PHA02795        287 SI  288 (437)
T ss_pred             CC
Confidence            65

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.65  E-value=1.1e-15  Score=170.07  Aligned_cols=140  Identities=19%  Similarity=0.116  Sum_probs=114.5

Q ss_pred             hhhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---
Q 003109          589 SRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTP---  665 (847)
Q Consensus       589 ~R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~---  665 (847)
                      ....+|||.|+..|+.++++.|++.+    ++++..     +. .|.||||+|++.|+.++|++|+++|++......   
T Consensus        33 ~~~~tpL~~A~~~g~~~iv~~Ll~~G----a~~n~~-----~~-~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~  102 (434)
T PHA02874         33 DETTTPLIDAIRSGDAKIVELFIKHG----ADINHI-----NT-KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCI  102 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccC
Confidence            34569999999999999999999863    444422     22 488999999999999999999999985310000   


Q ss_pred             --------CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHH
Q 003109          666 --------QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKL  737 (847)
Q Consensus       666 --------~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeL  737 (847)
                              .....++|.++..|.||||+|+.. +..+++++|+++      |+++|.+|.+|.||||+|+.+|+.+++++
T Consensus       103 ~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~-~~~~~v~~Ll~~------gad~n~~d~~g~tpLh~A~~~~~~~iv~~  175 (434)
T PHA02874        103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKK-GDLESIKMLFEY------GADVNIEDDNGCYPIHIAIKHNFFDIIKL  175 (434)
T ss_pred             CHHHHHHHHHCcCCCCCCCCCCccHHHHHHHC-CCHHHHHHHHhC------CCCCCCcCCCCCCHHHHHHHCCcHHHHHH
Confidence                    012346888999999999999985 677799999987      57899999999999999999999999999


Q ss_pred             HHHhhccc
Q 003109          738 VARKLADR  745 (847)
Q Consensus       738 Ll~K~a~~  745 (847)
                      |++++++.
T Consensus       176 Ll~~g~~~  183 (434)
T PHA02874        176 LLEKGAYA  183 (434)
T ss_pred             HHHCCCCC
Confidence            99988754

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.63  E-value=1.3e-15  Score=170.03  Aligned_cols=127  Identities=21%  Similarity=0.290  Sum_probs=110.5

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccC------chHHHHHHHcCC--HHHHHHHHHcCCCCC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWE------IQLLNRAVKMKC--RRMVDLLIHYSLTSS  661 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g------~TpLH~AV~~g~--~eIVeLLL~~GA~~~  661 (847)
                      ...+|||+|+..|+.++++.|++.++    +.+..     +. .|      .||||+|+..|+  .++|++|+++|+   
T Consensus       175 ~g~tpL~~A~~~~~~~iv~~Ll~~ga----~~~~~-----~~-~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~---  241 (480)
T PHA03100        175 YGYTPLHIAVEKGNIDVIKFLLDNGA----DINAG-----DI-ETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV---  241 (480)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCC----CccCC-----CC-CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC---
Confidence            34699999999999999999999643    33211     11 24      799999999999  999999999998   


Q ss_pred             CCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 003109          662 NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  741 (847)
Q Consensus       662 ~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K  741 (847)
                               ++|.+|..|.||||+|+.. +..+++++|++.      ||++|.+|.+|.||||+|+.+|+.+++++|+++
T Consensus       242 ---------din~~d~~g~TpL~~A~~~-~~~~iv~~Ll~~------gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~  305 (480)
T PHA03100        242 ---------PINIKDVYGFTPLHYAVYN-NNPEFVKYLLDL------GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN  305 (480)
T ss_pred             ---------CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhc
Confidence                     6789999999999999985 678899999987      568999999999999999999999999999998


Q ss_pred             hccc
Q 003109          742 LADR  745 (847)
Q Consensus       742 ~a~~  745 (847)
                      +++.
T Consensus       306 g~~i  309 (480)
T PHA03100        306 GPSI  309 (480)
T ss_pred             CCCH
Confidence            8865

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.63  E-value=2.5e-15  Score=167.69  Aligned_cols=147  Identities=19%  Similarity=0.149  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhchhhhcccccccccCCccchhhhhHHHHH-----HHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhcc
Q 003109          559 EEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVF-----SVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLW  633 (847)
Q Consensus       559 e~al~FL~ELGwLLqrs~~~~~~~v~~fsi~R~k~LL~F-----AvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~  633 (847)
                      .+..++|.+.|.=....            .....++||+     |+..|..++++.|++.+    ++++..     +. .
T Consensus        48 ~~ivk~Ll~~g~~~~~~------------~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g----a~i~~~-----d~-~  105 (480)
T PHA03100         48 IDVVKILLDNGADINSS------------TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG----ANVNAP-----DN-N  105 (480)
T ss_pred             HHHHHHHHHcCCCCCCc------------cccCcCHHHHHHHHHHHhhchHHHHHHHHHCC----CCCCCC-----CC-C
Confidence            46667777766322111            1123589999     99999999999999964    344322     22 5


Q ss_pred             CchHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCC-cHHHHHHHhCCCCCCCCCC
Q 003109          634 EIQLLNRAV--KMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSD-SDDIIDALTNDPQEIGPSS  710 (847)
Q Consensus       634 g~TpLH~AV--~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g-~e~VveLLL~~p~~vGagA  710 (847)
                      |.||||+|+  +.|+.++|++|+++|+            +++..+..|.||||+|+..+. ..+++++|+++      |+
T Consensus       106 g~tpL~~A~~~~~~~~~iv~~Ll~~g~------------~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~------g~  167 (480)
T PHA03100        106 GITPLLYAISKKSNSYSIVEYLLDNGA------------NVNIKNSDGENLLHLYLESNKIDLKILKLLIDK------GV  167 (480)
T ss_pred             CCchhhHHHhcccChHHHHHHHHHcCC------------CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC------CC
Confidence            899999999  9999999999999998            578899999999999998531 77899999998      57


Q ss_pred             CCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          711 WNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       711 ~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +++.+|..|.||||+|+..|+.+++++|++++++.
T Consensus       168 din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  202 (480)
T PHA03100        168 DINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI  202 (480)
T ss_pred             CcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc
Confidence            89999999999999999999999999999998876

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.62  E-value=1.9e-15  Score=181.85  Aligned_cols=132  Identities=17%  Similarity=0.103  Sum_probs=101.4

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      +...|+.|+..|+.++++.|++..    ++.+..     +. .|+||||+|+.+|+.++|++|+++|+            
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G----~d~n~~-----d~-~G~TpLh~Aa~~g~~~~v~~Ll~~ga------------  582 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAK----LDPDIG-----DS-KGRTPLHIAASKGYEDCVLVLLKHAC------------  582 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcChHHHHHHHHhcCC------------
Confidence            347788899999999999998753    444422     23 58899999999999999999999988            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCC-------------------------CCCCCCCCccCCCCCCCHHHH
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQ-------------------------EIGPSSWNSILDASGHSPYSY  725 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~-------------------------~vGagA~vnarD~~G~TPLHy  725 (847)
                      ++|.+|..|.||||+|+.. ++.+++++|++...                         .+..|+++|++|.+|.||||+
T Consensus       583 din~~d~~G~TpL~~A~~~-g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~  661 (823)
T PLN03192        583 NVHIRDANGNTALWNAISA-KHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQV  661 (823)
T ss_pred             CCCCcCCCCCCHHHHHHHh-CCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            5677888888888877653 44445554433211                         011267899999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhccc
Q 003109          726 ALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       726 Aa~~G~~eiIeLLl~K~a~~  745 (847)
                      |+..|+.+++++|++++++.
T Consensus       662 A~~~g~~~iv~~Ll~~GAdv  681 (823)
T PLN03192        662 AMAEDHVDMVRLLIMNGADV  681 (823)
T ss_pred             HHHCCcHHHHHHHHHcCCCC
Confidence            99999999999999998876

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.62  E-value=4.8e-15  Score=168.15  Aligned_cols=137  Identities=15%  Similarity=0.151  Sum_probs=108.9

Q ss_pred             hhhHHHHHHHhc--CchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcC----CHHHHHHHHHcCCCCCCC
Q 003109          590 RFKFLLVFSVDR--GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK----CRRMVDLLIHYSLTSSND  663 (847)
Q Consensus       590 R~k~LL~FAvdr--Gw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g----~~eIVeLLL~~GA~~~~~  663 (847)
                      +.++|||+|+..  ++.++++.|++.+    ++++..     ....|.||||.|++.+    +.++|++|+++|++....
T Consensus       144 ~g~tpLh~a~~~~~~~~~iv~~Ll~~G----adi~~~-----~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~  214 (494)
T PHA02989        144 RGYNLLHMYLESFSVKKDVIKILLSFG----VNLFEK-----TSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETN  214 (494)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHcC----CCcccc-----ccccCCChHHHHHhcccccccHHHHHHHHhCCCCcccc
Confidence            456999998865  5789999999864    444321     1225899999998764    999999999999974321


Q ss_pred             CC--CC------------------------cCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCC
Q 003109          664 TP--QK------------------------YIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA  717 (847)
Q Consensus       664 s~--~~------------------------~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~  717 (847)
                      +.  ..                        ...++|.+|..|+||||+||.. +..+++++|++.      ||++|++|.
T Consensus       215 ~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~-~~~~~v~~LL~~------Gadin~~d~  287 (494)
T PHA02989        215 NNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV-DNYEAFNYLLKL------GDDIYNVSK  287 (494)
T ss_pred             CCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh-cCHHHHHHHHHc------CCCccccCC
Confidence            10  00                        0146899999999999999985 677899999987      678999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          718 SGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       718 ~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                      .|.||||+|+.+|+.+++++|+++.
T Consensus       288 ~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        288 DGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999888753

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.60  E-value=2.1e-15  Score=172.51  Aligned_cols=125  Identities=23%  Similarity=0.184  Sum_probs=96.7

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      +-.+.|++.|..+.||.|++.-   +.+++..     +. +|.|+||||+-+|+.+++++||++||            ++
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~---g~~v~~~-----D~-~g~tlLHWAAiNNrl~v~r~li~~ga------------dv  104 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESE---GESVNNP-----DR-EGVTLLHWAAINNRLDVARYLISHGA------------DV  104 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhc---CcCCCCC-----Cc-CCccceeHHHHcCcHHHHHHHHHcCC------------Cc
Confidence            5567799999999999999961   3333322     33 69999999999999999999999999            45


Q ss_pred             CCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          673 NLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       673 na~d-~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |+.| .-|.|||||||.+ |+-.||++|+++      |||++++|.+|.||||+|++.||..+|-+|+.|+++.
T Consensus       105 n~~gG~l~stPLHWAar~-G~~~vv~lLlqh------GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~  171 (600)
T KOG0509|consen  105 NAIGGVLGSTPLHWAARN-GHISVVDLLLQH------GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI  171 (600)
T ss_pred             cccCCCCCCCcchHHHHc-CcHHHHHHHHHc------CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC
Confidence            6665 6677777777764 566677777777      5677777777777777777777777777777777665

>PHA03095 ankyrin-like protein; Provisional

Probab=99.60  E-value=8.5e-15  Score=162.83  Aligned_cols=127  Identities=20%  Similarity=0.165  Sum_probs=101.3

Q ss_pred             hhHHHHHHHhcC---chhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCC
Q 003109          591 FKFLLVFSVDRG---CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK-CRRMVDLLIHYSLTSSNDTPQ  666 (847)
Q Consensus       591 ~k~LL~FAvdrG---w~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g-~~eIVeLLL~~GA~~~~~s~~  666 (847)
                      .+++||+|+..|   ..++++.|++.+    ++++..     +. .|.||||+|+..| +.+++++|+++|+        
T Consensus        47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~G----adin~~-----~~-~g~TpLh~A~~~~~~~~iv~lLl~~ga--------  108 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKDIVRLLLEAG----ADVNAP-----ER-CGFTPLHLYLYNATTLDVIKLLIKAGA--------  108 (471)
T ss_pred             CCCHHHHHHHhcCCChHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcCCcHHHHHHHHHcCC--------
Confidence            468999999988   888999998853    445433     22 5889999999999 5999999999998        


Q ss_pred             CcCCCCCCCCCCCChHHHHHHhc-CCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcC--CHHHHHHHHHhhc
Q 003109          667 KYIFPPNLAGPGGITPLHLAACT-SDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN--NHAYNKLVARKLA  743 (847)
Q Consensus       667 ~~l~d~na~d~~G~TPLHlAA~~-~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G--~~eiIeLLl~K~a  743 (847)
                          ++|.++..|.||||+|+.. .+..+++++|+++      |++++.+|..|.||||+|+..+  +.+++++|+++++
T Consensus       109 ----~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~------gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~  178 (471)
T PHA03095        109 ----DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK------GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGA  178 (471)
T ss_pred             ----CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC
Confidence                5788888899999999832 3456788888887      5678889999999999888765  6788888888876


Q ss_pred             cc
Q 003109          744 DR  745 (847)
Q Consensus       744 ~~  745 (847)
                      +.
T Consensus       179 ~~  180 (471)
T PHA03095        179 DV  180 (471)
T ss_pred             CC
Confidence            65

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.60  E-value=5.5e-15  Score=159.88  Aligned_cols=123  Identities=20%  Similarity=0.145  Sum_probs=101.4

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      ..+|+.|+..|+.++++.||+.+    ++++....  .+...|.||||+|++.++.+++++|+++||            +
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~G----AdiN~~~~--~sd~~g~TpLh~Aa~~~~~eivklLL~~GA------------D   95 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLG----ADPEAPFP--LSENSKTNPLIYAIDCDNDDAAKLLIRYGA------------D   95 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCC----CCccccCc--ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            47888999999999999999964    44442210  011248999999999999999999999999            6


Q ss_pred             CCCC-CCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003109          672 PNLA-GPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVA  739 (847)
Q Consensus       672 ~na~-d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl  739 (847)
                      +|++ +..|.||||+|+.. +..+++++|+++      ||+++.+|.+|.||||+|++.++..++.++.
T Consensus        96 VN~~~~~~g~TpLh~Aa~~-~~~eivklLL~~------GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884         96 VNRYAEEAKITPLYISVLH-GCLKCLEILLSY------GADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             cCcccCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            7886 46899999999985 678899999988      5789999999999999999988877765554

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.60  E-value=4e-15  Score=174.84  Aligned_cols=127  Identities=15%  Similarity=0.156  Sum_probs=87.7

Q ss_pred             hhHHHHHHHhcC-chhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          591 FKFLLVFSVDRG-CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       591 ~k~LL~FAvdrG-w~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..++||+|+..+ ...+++.|++.    +.+++..     +. .|.||||+|+..|+.++|++|+++|+           
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~~----gadin~~-----d~-~G~TpLh~Aa~~~~~~iv~~Ll~~ga-----------  399 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLEL----GANVNAR-----DY-CDKTPIHYAAVRNNVVIINTLLDYGA-----------  399 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHHc----CCCCccC-----CC-CCCCHHHHHHHcCCHHHHHHHHHCCC-----------
Confidence            458999988864 67778877774    3444422     22 58999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcC-CHHHHHHHHHhhccc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN-NHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G-~~eiIeLLl~K~a~~  745 (847)
                       +++..+..|.||||+|+..++...++++|+++      |+++|.+|.+|+||||+|+.+| +.+++++|++++++.
T Consensus       400 -d~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~------gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        400 -DIEALSQKIGTALHFALCGTNPYMSVKTLIDR------GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV  469 (682)
T ss_pred             -CccccCCCCCchHHHHHHcCCHHHHHHHHHhC------CCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC
Confidence             44566666666666666554445556666665      3556666666666666666655 456666666666554

>PHA02798 ankyrin-like protein; Provisional

Probab=99.58  E-value=1.6e-14  Score=163.68  Aligned_cols=140  Identities=12%  Similarity=0.129  Sum_probs=111.5

Q ss_pred             hhhHHHHHHHhcCc---hhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHc----CCHHHHHHHHHcCCCCCC
Q 003109          590 RFKFLLVFSVDRGC---CALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM----KCRRMVDLLIHYSLTSSN  662 (847)
Q Consensus       590 R~k~LL~FAvdrGw---~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~----g~~eIVeLLL~~GA~~~~  662 (847)
                      ...+|||+|+..|.   .+++++|++.+    ++++..     +...|.||||.|++.    ++.+++++|+++|++...
T Consensus       144 ~g~tpL~~a~~~~~~~~~~vv~~Ll~~g----adin~~-----~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~  214 (489)
T PHA02798        144 DGFTMLQVYLQSNHHIDIEIIKLLLEKG----VDINTH-----NNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK  214 (489)
T ss_pred             CCCcHHHHHHHcCCcchHHHHHHHHHhC----CCcccc-----cCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc
Confidence            34699999999987   89999999863    444322     222588999999875    489999999999996421


Q ss_pred             C--CCCC----------------------c---CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccC
Q 003109          663 D--TPQK----------------------Y---IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  715 (847)
Q Consensus       663 ~--s~~~----------------------~---l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnar  715 (847)
                      .  ....                      +   ..++|.+|..|+||||+||.. +..+++++|++.      ||++|++
T Consensus       215 ~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~-~~~~~v~~LL~~------GAdin~~  287 (489)
T PHA02798        215 ENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSH-NNRKIFEYLLQL------GGDINII  287 (489)
T ss_pred             CCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHc-CcHHHHHHHHHc------CCccccc
Confidence            1  0000                      0   137899999999999999985 677899999998      6789999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          716 DASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       716 D~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |..|.||||+|+.+|+.+++++|+++..+.
T Consensus       288 d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        288 TELGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence            999999999999999999999998876554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.58  E-value=3.9e-15  Score=173.29  Aligned_cols=126  Identities=23%  Similarity=0.180  Sum_probs=109.7

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCcCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIH-YSLTSSNDTPQKYIF  670 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~-~GA~~~~~s~~~~l~  670 (847)
                      .+|||+|+++|+.+-+..||..    |++++.++      .++.||||+||++|+.+.||-||+ +|-           .
T Consensus       274 ~tpLH~a~r~G~~~svd~Ll~~----Ga~I~~kn------~d~~spLH~AA~yg~~ntv~rLL~~~~~-----------r  332 (929)
T KOG0510|consen  274 CTPLHYAARQGGPESVDNLLGF----GASINSKN------KDEESPLHFAAIYGRINTVERLLQESDT-----------R  332 (929)
T ss_pred             CchHHHHHHcCChhHHHHHHHc----CCcccccC------CCCCCchHHHHHcccHHHHHHHHhCcCc-----------c
Confidence            5899999999999999999996    45665442      258899999999999999999999 553           2


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc---cCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS---ILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vn---arD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ..|..|..|.||||+||. .|+..++++|++.      ||...   .+|.+|.||||+|++.|+...|++|+..+++.
T Consensus       333 llne~D~~g~tpLHlaa~-~gH~~v~qlLl~~------GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  333 LLNESDLHGMTPLHLAAK-SGHDRVVQLLLNK------GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             ccccccccCCCchhhhhh-cCHHHHHHHHHhc------ChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            468899999999999996 6899999999998      44454   56999999999999999999999999999987

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.58  E-value=1.5e-14  Score=169.98  Aligned_cols=127  Identities=21%  Similarity=0.118  Sum_probs=105.2

Q ss_pred             hhHHHHHHHhcCch-hHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCc
Q 003109          591 FKFLLVFSVDRGCC-ALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK-CRRMVDLLIHYSLTSSNDTPQKY  668 (847)
Q Consensus       591 ~k~LL~FAvdrGw~-AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g-~~eIVeLLL~~GA~~~~~s~~~~  668 (847)
                      .+++||+|+..|.. .++++|++..    ++++..     +. .|.||||+|++.| +.+++++|+.+|+          
T Consensus       273 g~TpLh~Aa~~~~~~~iv~lLl~~g----adin~~-----d~-~g~TpLh~Aa~~g~~~~~v~~Ll~~ga----------  332 (682)
T PHA02876        273 KNTPLHHASQAPSLSRLVPKLLERG----ADVNAK-----NI-KGETPLYLMAKNGYDTENIRTLIMLGA----------  332 (682)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHCC----CCCCCc-----CC-CCCCHHHHHHHhCCCHHHHHHHHHcCC----------
Confidence            46899999998875 5788887753    444422     22 5899999999998 5999999999998          


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          669 IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       669 l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                        ++|.+|..|+||||+|+..++..+++.+|+.+      ++++|.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus       333 --din~~d~~g~TpLh~A~~~~~~~~iv~lLl~~------gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~  401 (682)
T PHA02876        333 --DVNAADRLYITPLHQASTLDRNKDIVITLLEL------GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI  401 (682)
T ss_pred             --CCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc------CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence              56888899999999999877778888888887      5678999999999999999999999999999887775

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.58  E-value=1.4e-14  Score=172.43  Aligned_cols=136  Identities=16%  Similarity=0.037  Sum_probs=106.6

Q ss_pred             hhhHHHHHHHhcCc--hhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHH--------------------------
Q 003109          590 RFKFLLVFSVDRGC--CALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRA--------------------------  641 (847)
Q Consensus       590 R~k~LL~FAvdrGw--~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~A--------------------------  641 (847)
                      ..++|||+|+..|.  .+++++||+.+    ++++..     +. .|+||||+|                          
T Consensus       211 ~G~TPLH~Aa~~g~~~~eIVklLLe~G----ADVN~k-----D~-~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~  280 (764)
T PHA02716        211 HLITPLHTYLITGNVCASVIKKIIELG----GDMDMK-----CV-NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKN  280 (764)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHHHhhhccCHHHHHHHHHhcccccccc
Confidence            35699999999995  48999999864    444433     22 588999975                          


Q ss_pred             -----------HHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhc-CCcHHHHHHHhCCCCCCCCC
Q 003109          642 -----------VKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACT-SDSDDIIDALTNDPQEIGPS  709 (847)
Q Consensus       642 -----------V~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~-~g~e~VveLLL~~p~~vGag  709 (847)
                                 ++.|+.++|++||++|+            ++|.+|..|+||||+|+.. .+..+++++|+++      |
T Consensus       281 ~~~~L~~~i~AA~~g~leiVklLLe~GA------------dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~------G  342 (764)
T PHA02716        281 IPMILHSYITLARNIDISVVYSFLQPGV------------KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEY------G  342 (764)
T ss_pred             chhhhHHHHHHHHcCCHHHHHHHHhCCC------------ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHc------C
Confidence                       34566777777777776            6789999999999998653 4567899999987      5


Q ss_pred             CCCccCCCCCCCHHHHHHH--------------cCCHHHHHHHHHhhccc----cCCccccc
Q 003109          710 SWNSILDASGHSPYSYALM--------------KNNHAYNKLVARKLADR----RNGQVTIP  753 (847)
Q Consensus       710 A~vnarD~~G~TPLHyAa~--------------~G~~eiIeLLl~K~a~~----~~~~v~~~  753 (847)
                      |++|++|..|+||||+|+.              .|+.+++++|++++++.    ..|+.-+.
T Consensus       343 ADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        343 NDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             CCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            7899999999999999875              37899999999999886    24555443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.57  E-value=1.3e-14  Score=161.47  Aligned_cols=122  Identities=21%  Similarity=0.225  Sum_probs=104.9

Q ss_pred             HHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          596 VFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK---CRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       596 ~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g---~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      ..+...+..++++.|++.+    ++++..     +. .|.||||+|+..+   +.++|++|+++|+            ++
T Consensus        19 ~~~~~~~~~~~v~~Ll~~g----a~vn~~-----~~-~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga------------di   76 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAG----ADVNFR-----GE-YGKTPLHLYLHYSSEKVKDIVRLLLEAGA------------DV   76 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcC----CCcccC-----CC-CCCCHHHHHHHhcCCChHHHHHHHHHCCC------------CC
Confidence            4577788999999999864    344322     22 4899999999999   9999999999998            67


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHH--HcCCHHHHHHHHHhhccc
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYAL--MKNNHAYNKLVARKLADR  745 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa--~~G~~eiIeLLl~K~a~~  745 (847)
                      |.++..|.||||+|+..++..+++++|+++      ||++|.+|..|+||||+|+  .+++.+++++|++++++-
T Consensus        77 n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~------ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~  145 (471)
T PHA03095         77 NAPERCGFTPLHLYLYNATTLDVIKLLIKA------GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV  145 (471)
T ss_pred             CCCCCCCCCHHHHHHHcCCcHHHHHHHHHc------CCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC
Confidence            999999999999999975468899999998      5789999999999999999  667899999999998765

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.57  E-value=9.6e-15  Score=146.05  Aligned_cols=121  Identities=17%  Similarity=0.118  Sum_probs=100.0

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      -.++.+|++.+....|+.||..-++ .+  +..     +. +|+||||+|+.+|+.+||..||.+||            +
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an-~v--Ntr-----D~-D~YTpLHRAaYn~h~div~~ll~~gA------------n  122 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKAN-HV--NTR-----DE-DEYTPLHRAAYNGHLDIVHELLLSGA------------N  122 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccc-cc--ccc-----cc-ccccHHHHHHhcCchHHHHHHHHccC------------C
Confidence            3588899999999999999986332 11  211     22 69999999999999999999999999            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcC-CHHHHHHHHH
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN-NHAYNKLVAR  740 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G-~~eiIeLLl~  740 (847)
                      ++++...||||||-||.- +..+|+.+|+.+      |||||+..+.-+||||+||... ....+++|+.
T Consensus       123 ~~a~T~~GWTPLhSAckW-nN~~va~~LLqh------gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  123 KEAKTNEGWTPLHSACKW-NNFEVAGRLLQH------GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             cccccccCccchhhhhcc-cchhHHHHHHhc------cCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence            789999999999999874 566799999998      6899999999999999999754 4556677764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.56  E-value=1.3e-14  Score=126.84  Aligned_cols=85  Identities=26%  Similarity=0.273  Sum_probs=75.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCC
Q 003109          638 LNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA  717 (847)
Q Consensus       638 LH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~  717 (847)
                      ||+||++|+.+++++|++.+++            ++.    |.||||+||.. |..+++++|+++      +++++.+|.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~------------~~~----~~~~l~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~   57 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD------------INL----GNTALHYAAEN-GNLEIVKLLLEN------GADINSQDK   57 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST------------TTS----SSBHHHHHHHT-TTHHHHHHHHHT------TTCTT-BST
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC------------CCC----CCCHHHHHHHc-CCHHHHHHHHHh------cccccccCC
Confidence            8999999999999999999873            344    99999999985 678899999998      568999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          718 SGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       718 ~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|+||||+|+.+|+.+++++|++++++-
T Consensus        58 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   58 NGNTALHYAAENGNLEIVKLLLEHGADV   85 (89)
T ss_dssp             TSSBHHHHHHHTTHHHHHHHHHHTTT-T
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999997764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.56  E-value=2.4e-14  Score=162.40  Aligned_cols=133  Identities=14%  Similarity=0.122  Sum_probs=97.4

Q ss_pred             hhHHHHHHHhc---CchhHHHHHHHHHHhccccC-CCCcHHHHhhccCchHHHHHHHc--CCHHHHHHHHHcCCCCCCCC
Q 003109          591 FKFLLVFSVDR---GCCALVKAILDILVEGNLSM-DGLSRESLEMLWEIQLLNRAVKM--KCRRMVDLLIHYSLTSSNDT  664 (847)
Q Consensus       591 ~k~LL~FAvdr---Gw~AVVK~LLd~l~~g~vdi-d~~s~~~~~~l~g~TpLH~AV~~--g~~eIVeLLL~~GA~~~~~s  664 (847)
                      ..+|||.|+..   |..+++++||+.+    +++ +..     +. .|+||||+|+..  ++.++|++||++|++     
T Consensus       108 g~tpL~~a~~~~~~~~~eiv~~Ll~~G----adin~~~-----d~-~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad-----  172 (494)
T PHA02989        108 GVSPIVCFIYNSNINNCDMLRFLLSKG----INVNDVK-----NS-RGYNLLHMYLESFSVKKDVIKILLSFGVN-----  172 (494)
T ss_pred             CCcHHHHHHHhcccCcHHHHHHHHHCC----CCccccc-----CC-CCCCHHHHHHHhccCCHHHHHHHHHcCCC-----
Confidence            46899988765   6789999999964    444 211     22 599999999864  689999999999994     


Q ss_pred             CCCcCCCCCC-CCCCCChHHHHHHhcC---CcHHHHHHHhCCCCCCC--------------------------------C
Q 003109          665 PQKYIFPPNL-AGPGGITPLHLAACTS---DSDDIIDALTNDPQEIG--------------------------------P  708 (847)
Q Consensus       665 ~~~~l~d~na-~d~~G~TPLHlAA~~~---g~e~VveLLL~~p~~vG--------------------------------a  708 (847)
                             ++. .+..|.||||+|+...   +..+++++|++++..+-                                .
T Consensus       173 -------i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~  245 (494)
T PHA02989        173 -------LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK  245 (494)
T ss_pred             -------ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh
Confidence                   344 4556666666665421   24456666655522110                                0


Q ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          709 SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       709 gA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|++|++|..|+||||+|+..|+.+++++|++++++.
T Consensus       246 ~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi  282 (494)
T PHA02989        246 YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDI  282 (494)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCc
Confidence            3568899999999999999999999999999998886

>PHA02795 ankyrin-like protein; Provisional

Probab=99.56  E-value=1.8e-14  Score=162.31  Aligned_cols=130  Identities=14%  Similarity=0.030  Sum_probs=108.0

Q ss_pred             hhHHHHHHHh--cCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc
Q 003109          591 FKFLLVFSVD--RGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY  668 (847)
Q Consensus       591 ~k~LL~FAvd--rGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~  668 (847)
                      .+++||+++.  .|+.++|++|++.+    ++++..        .+.||||+|+..|+.+||++|+++|++..+      
T Consensus       116 ~~~~L~~~~~n~~n~~eiV~~LI~~G----ADIn~~--------~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n------  177 (437)
T PHA02795        116 VQDLLLYYLSNAYVEIDIVDFMVDHG----AVIYKI--------ECLNAYFRGICKKESSVVEFILNCGIPDEN------  177 (437)
T ss_pred             ccHHHHHHHHhcCCCHHHHHHHHHCC----CCCCCC--------CCCCHHHHHHHcCcHHHHHHHHhcCCcccc------
Confidence            4699999999  88999999999964    455422        357999999999999999999999983110      


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          669 IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       669 l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ..+.+..+..|.||+|.|+. ++..+++++|+++      ||++|.+|..|+||||+|+.+|+.+++++|++++++-
T Consensus       178 ~~~~~l~~~~~~t~l~~a~~-~~~~eIve~LIs~------GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI  247 (437)
T PHA02795        178 DVKLDLYKIIQYTRGFLVDE-PTVLEIYKLCIPY------IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV  247 (437)
T ss_pred             cccchhhhhhccchhHHHHh-cCHHHHHHHHHhC------cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            00112234568899999998 5778899999998      6789999999999999999999999999999999876

>PHA02946 ankyin-like protein; Provisional

Probab=99.56  E-value=2.9e-14  Score=161.17  Aligned_cols=138  Identities=14%  Similarity=0.102  Sum_probs=106.5

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcC--CHHHHHHHHHcCCCCCC---CCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK--CRRMVDLLIHYSLTSSN---DTP  665 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g--~~eIVeLLL~~GA~~~~---~s~  665 (847)
                      .++|||+|+..|+.++++.||+.+    ++++..     +. .|+||||+|+..+  +.+++++|+++|++...   ..+
T Consensus        72 G~TpLh~Aa~~g~~eiv~lLL~~G----Adin~~-----d~-~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g  141 (446)
T PHA02946         72 GNYPLHIASKINNNRIVAMLLTHG----ADPNAC-----DK-QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEG  141 (446)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCc----CCCCCC-----CC-CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCC
Confidence            469999999999999999999853    444432     23 5899999998866  48899999999996431   111


Q ss_pred             C------------------CcCCCCCCCCCCCChHHHHHHhcCC-cHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHH
Q 003109          666 Q------------------KYIFPPNLAGPGGITPLHLAACTSD-SDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYA  726 (847)
Q Consensus       666 ~------------------~~l~d~na~d~~G~TPLHlAA~~~g-~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyA  726 (847)
                      .                  ....++|.+|..|+||||+|+..++ ..+++++|+++      ||++|.+|.+|.||||+|
T Consensus       142 ~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~------Gadin~~d~~G~TpLH~A  215 (446)
T PHA02946        142 CGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKL------GISPSKPDHDGNTPLHIV  215 (446)
T ss_pred             CcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc------CCCCcccCCCCCCHHHHH
Confidence            0                  1234678899999999999886433 35688999887      578999999999999999


Q ss_pred             HHcC--CHHHHHHHHHhhccc
Q 003109          727 LMKN--NHAYNKLVARKLADR  745 (847)
Q Consensus       727 a~~G--~~eiIeLLl~K~a~~  745 (847)
                      +.+|  +.+++++|+. +++.
T Consensus       216 a~~~~~~~~iv~lLl~-gadi  235 (446)
T PHA02946        216 CSKTVKNVDIINLLLP-STDV  235 (446)
T ss_pred             HHcCCCcHHHHHHHHc-CCCC
Confidence            9986  7889998885 4443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.56  E-value=1.6e-14  Score=171.89  Aligned_cols=127  Identities=9%  Similarity=0.008  Sum_probs=103.1

Q ss_pred             hhHHHHHHHhc--CchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCC
Q 003109          591 FKFLLVFSVDR--GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC--RRMVDLLIHYSLTSSNDTPQ  666 (847)
Q Consensus       591 ~k~LL~FAvdr--Gw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~--~eIVeLLL~~GA~~~~~s~~  666 (847)
                      .+++||+|+.+  +..+++++|++.    +++++..     +. .|.||||+|++.|+  .++|++||++||        
T Consensus       177 G~TpLH~A~~n~~~~~eIVklLLe~----GADVN~k-----D~-~G~TPLH~Aa~~g~~~~eIVklLLe~GA--------  238 (764)
T PHA02716        177 GYGILHAYLGNMYVDIDILEWLCNN----GVNVNLQ-----NN-HLITPLHTYLITGNVCASVIKKIIELGG--------  238 (764)
T ss_pred             CCcHHHHHHHhccCCHHHHHHHHHc----CCCCCCC-----CC-CCCCHHHHHHHcCCCCHHHHHHHHHcCC--------
Confidence            45899998765  467899999985    3455433     22 58999999999995  599999999999        


Q ss_pred             CcCCCCCCCCCCCChHHHHHHh------------------------------------cCCcHHHHHHHhCCCCCCCCCC
Q 003109          667 KYIFPPNLAGPGGITPLHLAAC------------------------------------TSDSDDIIDALTNDPQEIGPSS  710 (847)
Q Consensus       667 ~~l~d~na~d~~G~TPLHlAA~------------------------------------~~g~e~VveLLL~~p~~vGagA  710 (847)
                          ++|.++..|+||||+|+.                                    ..+..+++++|+++      ||
T Consensus       239 ----DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~------GA  308 (764)
T PHA02716        239 ----DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP------GV  308 (764)
T ss_pred             ----CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC------CC
Confidence                679999999999998742                                    12455678888877      57


Q ss_pred             CCccCCCCCCCHHHHHHH--cCCHHHHHHHHHhhccc
Q 003109          711 WNSILDASGHSPYSYALM--KNNHAYNKLVARKLADR  745 (847)
Q Consensus       711 ~vnarD~~G~TPLHyAa~--~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.+|.+|+||||+|+.  .++.+++++|++++++-
T Consensus       309 dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI  345 (764)
T PHA02716        309 KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL  345 (764)
T ss_pred             ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC
Confidence            899999999999999875  46889999999998876

>PHA02946 ankyin-like protein; Provisional

Probab=99.56  E-value=2.5e-14  Score=161.68  Aligned_cols=124  Identities=19%  Similarity=0.103  Sum_probs=93.4

Q ss_pred             HHHHHHH--hcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          593 FLLVFSV--DRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       593 ~LL~FAv--drGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+||.++  ..+..++++.|++.+    .+++..     +. .|+||||+|++.|+.++|++||++||            
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~G----advn~~-----d~-~G~TpLh~Aa~~g~~eiv~lLL~~GA------------   96 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRG----YSPNET-----DD-DGNYPLHIASKINNNRIVAMLLTHGA------------   96 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCc----CCCCcc-----CC-CCCCHHHHHHHcCCHHHHHHHHHCcC------------
Confidence            6777765  344678999999864    444433     23 59999999999999999999999999            


Q ss_pred             CCCCCCCCCChHHHHHHhcCC-cHHHHHHHhCCCCCCCCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSD-SDDIIDALTNDPQEIGPSSWNSI-LDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g-~e~VveLLL~~p~~vGagA~vna-rD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.+|..|+||||+|+..+. ..+++++|+++      ||++|. .|.+|.|||| |+..|+.+++++|++++++-
T Consensus        97 din~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~------Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~  166 (446)
T PHA02946         97 DPNACDKQHKTPLYYLSGTDDEVIERINLLVQY------GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA  166 (446)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc------CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc
Confidence            578888889999998876432 35678888877      456764 5777888886 55667777887777766543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=1.2e-14  Score=169.40  Aligned_cols=206  Identities=21%  Similarity=0.183  Sum_probs=139.8

Q ss_pred             CccEEec----chhhhhHhhhhhhhcccccccccccccccccccCCCccHHHHHHHHHHhchhhhcccccccccCCccch
Q 003109          513 SFPVIIA----DATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSL  588 (847)
Q Consensus       513 ~fP~IVa----D~~ICsElr~LE~~l~~s~~~~diise~~~~~~~~~~SRe~al~FL~ELGwLLqrs~~~~~~~v~~fsi  588 (847)
                      +-|+++|    ..++-.||-..-......    |+-.-+..|+..+..+.+..+-||.+.|.        .+.....|-.
T Consensus       155 ~TpLh~A~~~~~~E~~k~Li~~~a~~~K~----~~~~~~~iH~aa~s~s~e~mEi~l~~~g~--------~r~~~in~~~  222 (929)
T KOG0510|consen  155 FTPLHLAARKNKVEAKKELINKGADPCKS----DIDGNFPIHEAARSGSKECMEIFLPEHGY--------ERQTHINFDN  222 (929)
T ss_pred             CchhhHHHhcChHHHHHHHHhcCCCCCcc----cCcCCchHHHHHHhcchhhhhhhhccccc--------hhhccccccc
Confidence            5688876    344556643332222211    11111112333344444555555554441        1212234666


Q ss_pred             hhhhHHHHHHHhcCchhHHHHHHHHHHhcc-ccCCCCc--HHHH--hhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 003109          589 SRFKFLLVFSVDRGCCALVKAILDILVEGN-LSMDGLS--RESL--EMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSND  663 (847)
Q Consensus       589 ~R~k~LL~FAvdrGw~AVVK~LLd~l~~g~-vdid~~s--~~~~--~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~  663 (847)
                      +...+|||.|++.|+.+.++.+|+.+.... +..|...  ++.+  +..+|.||||+|++.|+.++|+.||.+||     
T Consensus       223 n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga-----  297 (929)
T KOG0510|consen  223 NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGA-----  297 (929)
T ss_pred             CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCC-----
Confidence            777899999999999999999999865421 1101010  0000  11258999999999999999999999999     


Q ss_pred             CCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 003109          664 TPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA  743 (847)
Q Consensus       664 s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a  743 (847)
                             +++.++.++.||||.||.. |..+.++-|++-+   | ....|..|-.|.||||+|+..||..++++|+++++
T Consensus       298 -------~I~~kn~d~~spLH~AA~y-g~~ntv~rLL~~~---~-~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA  365 (929)
T KOG0510|consen  298 -------SINSKNKDEESPLHFAAIY-GRINTVERLLQES---D-TRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGA  365 (929)
T ss_pred             -------cccccCCCCCCchHHHHHc-ccHHHHHHHHhCc---C-ccccccccccCCCchhhhhhcCHHHHHHHHHhcCh
Confidence                   5688899999999999995 5666777676632   2 35689999999999999999999999999999998


Q ss_pred             cccC
Q 003109          744 DRRN  747 (847)
Q Consensus       744 ~~~~  747 (847)
                      ...+
T Consensus       366 ~~~~  369 (929)
T KOG0510|consen  366 LFLN  369 (929)
T ss_pred             hhhc
Confidence            8753

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.54  E-value=8e-15  Score=178.31  Aligned_cols=136  Identities=24%  Similarity=0.215  Sum_probs=113.5

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      ++||.|.+.+...+++.+++..    +.++..      ...|.||||.||.+|+..+|++||++||            ++
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~g----a~v~~~------~~r~~TpLh~A~~~g~v~~VkfLLe~gA------------dv  566 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHG----ANVDLR------TGRGYTPLHVAVHYGNVDLVKFLLEHGA------------DV  566 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcC----Cceehh------cccccchHHHHHhcCCchHHHHhhhCCc------------cc
Confidence            6777777777777777777753    333321      2247899999999999999999999999            57


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc-----c--
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD-----R--  745 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~-----~--  745 (847)
                      +++++.|+||||.||.. |+.+|+++|+++      ||++|+.|.+|.||||+|+..|+++++++|...+++     .  
T Consensus       567 ~ak~~~G~TPLH~Aa~~-G~~~i~~LLlk~------GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~  639 (1143)
T KOG4177|consen  567 NAKDKLGYTPLHQAAQQ-GHNDIAELLLKH------GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVK  639 (1143)
T ss_pred             cccCCCCCChhhHHHHc-ChHHHHHHHHHc------CCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchh
Confidence            89999999999999997 588899999999      578999999999999999999999999999988777     2  


Q ss_pred             --cCCccccccCcc
Q 003109          746 --RNGQVTIPVGVE  757 (847)
Q Consensus       746 --~~~~v~~~i~~~  757 (847)
                        .+|++-.+++.+
T Consensus       640 e~~~g~~p~~v~e~  653 (1143)
T KOG4177|consen  640 ENRKGAVPEDVAEE  653 (1143)
T ss_pred             hhhcccChhhHHHH
Confidence              357776666655

>PHA02798 ankyrin-like protein; Provisional

Probab=99.53  E-value=3.8e-14  Score=160.65  Aligned_cols=120  Identities=20%  Similarity=0.206  Sum_probs=101.2

Q ss_pred             HHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          598 SVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM-----KCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       598 AvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~-----g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      +.+.+..++++.|++.+    ++++..     +. .|.||||.|+..     ++.++|++|+++||            ++
T Consensus        45 ~~~~~~~~iv~~Ll~~G----advn~~-----d~-~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Ga------------di  102 (489)
T PHA02798         45 QRDSPSTDIVKLFINLG----ANVNGL-----DN-EYSTPLCTILSNIKDYKHMLDIVKILIENGA------------DI  102 (489)
T ss_pred             hCCCCCHHHHHHHHHCC----CCCCCC-----CC-CCCChHHHHHHhHHhHHhHHHHHHHHHHCCC------------CC
Confidence            34445889999999964    455533     22 589999999864     67999999999999            67


Q ss_pred             CCCCCCCChHHHHHHhcC--CcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCC---HHHHHHHHHhhccc
Q 003109          673 NLAGPGGITPLHLAACTS--DSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNN---HAYNKLVARKLADR  745 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~--g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~---~eiIeLLl~K~a~~  745 (847)
                      |.+|..|+||||+|+..+  +..+++++|+++      ||+++++|.+|.||||+|++.|+   .+++++|++++++-
T Consensus       103 N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~------Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798        103 NKKNSDGETPLYCLLSNGYINNLEILLFMIEN------GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc------CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            999999999999999753  367899999998      67899999999999999999998   99999999998775

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.53  E-value=1.9e-14  Score=156.21  Aligned_cols=160  Identities=21%  Similarity=0.168  Sum_probs=115.5

Q ss_pred             HHHHHHHHHhc----hhhhcccccccccCCccchhhhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCC---cHH----
Q 003109          559 EEVLHFLNELG----WLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGL---SRE----  627 (847)
Q Consensus       559 e~al~FL~ELG----wLLqrs~~~~~~~v~~fsi~R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~---s~~----  627 (847)
                      +.+.+||...+    -||++-        ..|.-.+..+.||||+.+++++||+.|||...= .+|....   .+.    
T Consensus       240 e~V~~~l~~f~als~~lL~yv--------VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC-~VD~qNrAGYtpiMLaA  310 (452)
T KOG0514|consen  240 EQVEDYLAYFEALSPPLLEYV--------VNLADSNGNTALHYAVSHANFDVVSILLDSGVC-DVDQQNRAGYTPVMLAA  310 (452)
T ss_pred             HHHHHHHHHHHhcChHHHHHH--------hhhhcCCCCeeeeeeecccchHHHHHHhccCcc-cccccccccccHHHHHH
Confidence            67777777665    233333        113334678999999999999999999996320 0110000   000    


Q ss_pred             -----------------------HHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHH
Q 003109          628 -----------------------SLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLH  684 (847)
Q Consensus       628 -----------------------~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLH  684 (847)
                                             ......|.|+|++||.+|..+||++||..||            |+|.+|.+|-|+|+
T Consensus       311 LA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgA------------dVNiQDdDGSTALM  378 (452)
T KOG0514|consen  311 LAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGA------------DVNIQDDDGSTALM  378 (452)
T ss_pred             HHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccC------------CCccccCCccHHHh
Confidence                                   0111257899999999999999999999888            67888999999999


Q ss_pred             HHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          685 LAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       685 lAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      -||++ |+.+|+++|+..|     ++|+...|.+|.|+|.+|-..||.+|.-+|-.+.+-+
T Consensus       379 CA~EH-GhkEivklLLA~p-----~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n~~  433 (452)
T KOG0514|consen  379 CAAEH-GHKEIVKLLLAVP-----SCDISLTDVDGSTALSIALEAGHREIAVMLYAHMNIK  433 (452)
T ss_pred             hhhhh-ChHHHHHHHhccC-----cccceeecCCCchhhhhHHhcCchHHHHHHHHHHHhh
Confidence            99884 7788999888886     4678888999999999999999998888777665443

>PHA02741 hypothetical protein; Provisional

Probab=99.51  E-value=5.7e-14  Score=138.20  Aligned_cols=100  Identities=15%  Similarity=0.184  Sum_probs=80.8

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCc---HHHHHHHhCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDS---DDIIDALTNDPQEIGPS  709 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~---e~VveLLL~~p~~vGag  709 (847)
                      .|.|+||+|++.|+.++|++|+.+...      ..+..++|.+|..|.||||+|+..+..   .+++++|+.+      +
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~------~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~------g   87 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRG------DCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL------G   87 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhcc------chhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc------C
Confidence            488999999999999999999754200      001125789999999999999985432   4789999987      5


Q ss_pred             CCCccCCC-CCCCHHHHHHHcCCHHHHHHHHHh-hcc
Q 003109          710 SWNSILDA-SGHSPYSYALMKNNHAYNKLVARK-LAD  744 (847)
Q Consensus       710 A~vnarD~-~G~TPLHyAa~~G~~eiIeLLl~K-~a~  744 (847)
                      +++|.+|. +|.||||+|++.|+.+++++|+.+ +++
T Consensus        88 adin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~  124 (169)
T PHA02741         88 ADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID  124 (169)
T ss_pred             CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            78999985 999999999999999999999874 544

>PHA02917 ankyrin-like protein; Provisional

Probab=99.51  E-value=7.3e-14  Score=165.07  Aligned_cols=134  Identities=14%  Similarity=0.153  Sum_probs=99.3

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHH--HcCCHHHHHHHHHcCCCCCCCC---CCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAV--KMKCRRMVDLLIHYSLTSSNDT---PQK  667 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV--~~g~~eIVeLLL~~GA~~~~~s---~~~  667 (847)
                      .++++|+++|+.+++++|++.    |++++..     +. .|+||||+|+  ..|+.+||++||++||++....   ..+
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~----Gadin~~-----d~-~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g  174 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEH----GFDLSVK-----CE-NHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYG  174 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHc----CCCCCcc-----CC-CCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccc
Confidence            556778889999999999885    4555533     22 5999999654  5789999999999999542100   011


Q ss_pred             cCCCCCCCCCCCChHHHHHHhc----------CCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCH--HHH
Q 003109          668 YIFPPNLAGPGGITPLHLAACT----------SDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNH--AYN  735 (847)
Q Consensus       668 ~l~d~na~d~~G~TPLHlAA~~----------~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~--eiI  735 (847)
                      |.++ +.....+.||||+|+..          .++.+++++|+++      ||++|.+|.+|.||||+|+.+|+.  +++
T Consensus       175 ~~~~-~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~------Gadvn~~d~~G~TpLh~A~~~g~~~~eiv  247 (661)
T PHA02917        175 YAYD-DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH------GIKPSSIDKNYCTALQYYIKSSHIDIDIV  247 (661)
T ss_pred             cccc-cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC------CCCcccCCCCCCcHHHHHHHcCCCcHHHH
Confidence            1110 22334557999999852          2467899999998      679999999999999999999995  799


Q ss_pred             HHHHHhhcc
Q 003109          736 KLVARKLAD  744 (847)
Q Consensus       736 eLLl~K~a~  744 (847)
                      ++|++ +++
T Consensus       248 k~Li~-g~d  255 (661)
T PHA02917        248 KLLMK-GID  255 (661)
T ss_pred             HHHHh-CCc
Confidence            99975 543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.48  E-value=5.9e-14  Score=156.12  Aligned_cols=124  Identities=18%  Similarity=0.085  Sum_probs=106.7

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      .||-.|+-.||.+|||.|+...    ++++..      ....-|||--||.-|+.+||++|+++||            |+
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~g----a~VN~t------T~TNStPLraACfDG~leivKyLvE~ga------------d~  143 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRG----ASVNDT------TRTNSTPLRAACFDGHLEIVKYLVEHGA------------DP  143 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhc----Cccccc------cccCCccHHHHHhcchhHHHHHHHHcCC------------CC
Confidence            5665677889999999999985    333322      1124599999999999999999999998            68


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++.+..|.|-||+||. +|+.+|+++|++.      |||+|+++..|.|+||.++..||.+++++|++.+++-
T Consensus       144 ~IanrhGhTcLmIa~y-kGh~~I~qyLle~------gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i  209 (615)
T KOG0508|consen  144 EIANRHGHTCLMIACY-KGHVDIAQYLLEQ------GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI  209 (615)
T ss_pred             cccccCCCeeEEeeec-cCchHHHHHHHHh------CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee
Confidence            8999999999999998 4788899999987      6789999999999999999999999999999987776

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.47  E-value=2.3e-13  Score=118.91  Aligned_cols=89  Identities=21%  Similarity=0.231  Sum_probs=75.3

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCC
Q 003109          595 LVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNL  674 (847)
Q Consensus       595 L~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na  674 (847)
                      ||+|+.+|..++++.|++..    .+.+        .  |.||||+|+.+|+.+|+++|+++|+            ++|.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~----~~~~--------~--~~~~l~~A~~~~~~~~~~~Ll~~g~------------~~~~   54 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG----ADIN--------L--GNTALHYAAENGNLEIVKLLLENGA------------DINS   54 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT----STTT--------S--SSBHHHHHHHTTTHHHHHHHHHTTT------------CTT-
T ss_pred             CHHHHHcCCHHHHHHHHHCc----CCCC--------C--CCCHHHHHHHcCCHHHHHHHHHhcc------------cccc
Confidence            79999999999999999942    2222        1  7899999999999999999999998            6788


Q ss_pred             CCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCC
Q 003109          675 AGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD  716 (847)
Q Consensus       675 ~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD  716 (847)
                      ++..|+||||+|+. .+..+++++|+++      |+++|.+|
T Consensus        55 ~~~~g~t~L~~A~~-~~~~~~~~~Ll~~------g~~~~~~n   89 (89)
T PF12796_consen   55 QDKNGNTALHYAAE-NGNLEIVKLLLEH------GADVNIRN   89 (89)
T ss_dssp             BSTTSSBHHHHHHH-TTHHHHHHHHHHT------TT-TTSS-
T ss_pred             cCCCCCCHHHHHHH-cCCHHHHHHHHHc------CCCCCCcC
Confidence            99999999999998 4778899999998      56788876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.47  E-value=5e-14  Score=145.08  Aligned_cols=123  Identities=20%  Similarity=0.181  Sum_probs=107.5

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      ..++.+++.+-+.+++..|.+...+.+           +. .|.|||.||++.|++++|++||.+||            +
T Consensus       130 ~s~~slsVhql~L~~~~~~~~n~VN~~-----------De-~GfTpLiWAaa~G~i~vV~fLL~~GA------------d  185 (296)
T KOG0502|consen  130 WSPLSLSVHQLHLDVVDLLVNNKVNAC-----------DE-FGFTPLIWAAAKGHIPVVQFLLNSGA------------D  185 (296)
T ss_pred             CChhhHHHHHHHHHHHHHHhhccccCc-----------cc-cCchHhHHHHhcCchHHHHHHHHcCC------------C
Confidence            578889998888888888777654321           22 38999999999999999999999999            7


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |++.++.-.|+|.+|+. +|..+||++|++.      +.|+|..|.+|-|||-||++.||.+++|.|+..+++-
T Consensus       186 p~~lgk~resALsLAt~-ggytdiV~lLL~r------~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~  252 (296)
T KOG0502|consen  186 PDALGKYRESALSLATR-GGYTDIVELLLTR------EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADV  252 (296)
T ss_pred             hhhhhhhhhhhHhHHhc-CChHHHHHHHHhc------CCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCc
Confidence            89999999999999987 7899999999987      4689999999999999999999999999999999886

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.47  E-value=6.2e-14  Score=148.62  Aligned_cols=104  Identities=22%  Similarity=0.259  Sum_probs=93.4

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.+|||+|++.|+..+||+||..|+            ++|+.+.+.-||||+||.. |+.+||..|++.      .||+
T Consensus        33 hgfsplhwaakegh~aivemll~rga------------rvn~tnmgddtplhlaaah-ghrdivqkll~~------kadv   93 (448)
T KOG0195|consen   33 HGFSPLHWAAKEGHVAIVEMLLSRGA------------RVNSTNMGDDTPLHLAAAH-GHRDIVQKLLSR------KADV   93 (448)
T ss_pred             cCcchhhhhhhcccHHHHHHHHhccc------------ccccccCCCCcchhhhhhc-ccHHHHHHHHHH------hccc
Confidence            58999999999999999999999998            7899999999999999985 788999999887      6899


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCccccccC
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG  755 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~----~~~~v~~~i~  755 (847)
                      |+.++.|.|||||||.-|+..+.|-|+..++..    ++|+.-++..
T Consensus        94 navnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   94 NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             chhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            999999999999999999999999999887765    3576666554

>PHA02730 ankyrin-like protein; Provisional

Probab=99.45  E-value=4.9e-13  Score=157.21  Aligned_cols=125  Identities=15%  Similarity=0.106  Sum_probs=97.7

Q ss_pred             HHHHHHhcC---chhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCC
Q 003109          594 LLVFSVDRG---CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC----RRMVDLLIHYSLTSSNDTPQ  666 (847)
Q Consensus       594 LL~FAvdrG---w~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~----~eIVeLLL~~GA~~~~~s~~  666 (847)
                      +|+.=.+.+   ..++++.|++.+    ++++.      . ..|.||||+|+..++    .++|++||++|++.      
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~G----AdIN~------k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~------  408 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNG----ATMDK------T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHM------  408 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCC----CCCCc------C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCc------
Confidence            777766655   588999999964    55552      1 258999999998875    89999999999842      


Q ss_pred             CcCCCCCCCCCCCChHHHH--HHhcCC---------cHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHH
Q 003109          667 KYIFPPNLAGPGGITPLHL--AACTSD---------SDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYN  735 (847)
Q Consensus       667 ~~l~d~na~d~~G~TPLHl--AA~~~g---------~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiI  735 (847)
                          ++|.+|..|.||||.  ++...+         ..+++++|+.+      ||++|++|..|+||||||+..|+.+++
T Consensus       409 ----dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~------GADINakD~~G~TPLh~Aa~~~~~eiv  478 (672)
T PHA02730        409 ----AINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY------MDDIDMIDNENKTLLYYAVDVNNIQFA  478 (672)
T ss_pred             ----cccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc------ccchhccCCCCCCHHHHHHHhCCHHHH
Confidence                578888899999983  333221         12468999888      578999999999999999999999999


Q ss_pred             HHHHHhhccc
Q 003109          736 KLVARKLADR  745 (847)
Q Consensus       736 eLLl~K~a~~  745 (847)
                      ++|++++++.
T Consensus       479 e~LI~~GAdI  488 (672)
T PHA02730        479 RRLLEYGASV  488 (672)
T ss_pred             HHHHHCCCCC
Confidence            9999988875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.43  E-value=1.4e-13  Score=141.77  Aligned_cols=124  Identities=20%  Similarity=0.184  Sum_probs=107.5

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      -++|+||+.+|+.++|++||+.++    +.     +.+.+ +-.++|..|++.|..+||++||..++            |
T Consensus       161 fTpLiWAaa~G~i~vV~fLL~~GA----dp-----~~lgk-~resALsLAt~ggytdiV~lLL~r~v------------d  218 (296)
T KOG0502|consen  161 FTPLIWAAAKGHIPVVQFLLNSGA----DP-----DALGK-YRESALSLATRGGYTDIVELLLTREV------------D  218 (296)
T ss_pred             chHhHHHHhcCchHHHHHHHHcCC----Ch-----hhhhh-hhhhhHhHHhcCChHHHHHHHHhcCC------------C
Confidence            499999999999999999999643    22     23344 35699999999999999999999998            6


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|.-|.+|.|||-||+. +++.++++.|++.      ||+++..|+.|+++++.|+.-|+. +|+.++.|...+
T Consensus       219 VNvyDwNGgTpLlyAvr-gnhvkcve~Ll~s------GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lk  284 (296)
T KOG0502|consen  219 VNVYDWNGGTPLLYAVR-GNHVKCVESLLNS------GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALK  284 (296)
T ss_pred             cceeccCCCceeeeeec-CChHHHHHHHHhc------CCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHH
Confidence            79999999999999997 7899999999997      689999999999999999999998 777766665554

>PHA02730 ankyrin-like protein; Provisional

Probab=99.42  E-value=6.4e-13  Score=156.29  Aligned_cols=148  Identities=9%  Similarity=0.005  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHhchhhhcccccccccCCccchhhhhHHHHHHHhcCc----hhHHHHHHHHHHhccccCCCCcHHHHhhcc
Q 003109          558 REEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGC----CALVKAILDILVEGNLSMDGLSRESLEMLW  633 (847)
Q Consensus       558 Re~al~FL~ELGwLLqrs~~~~~~~v~~fsi~R~k~LL~FAvdrGw----~AVVK~LLd~l~~g~vdid~~s~~~~~~l~  633 (847)
                      +.+..+||.+.|-=+-..             ...++|||+|+..+.    .++++.|+..+..  .+++..     +. .
T Consensus       358 ~ieIvelLIs~GAdIN~k-------------~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~--~dIN~k-----d~-~  416 (672)
T PHA02730        358 SIPILRCMLDNGATMDKT-------------TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGH--MAINHV-----SN-N  416 (672)
T ss_pred             cHHHHHHHHHCCCCCCcC-------------CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCC--cccccc-----cc-C
Confidence            357788888887322211             134699999998875    7999999985321  233322     23 5


Q ss_pred             CchHHHH---HHHcC---------CHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhC
Q 003109          634 EIQLLNR---AVKMK---------CRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTN  701 (847)
Q Consensus       634 g~TpLH~---AV~~g---------~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~  701 (847)
                      |.||||.   |...+         ..+++++||.+||            ++|++|..|+||||+||.. +..+++++|++
T Consensus       417 G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GA------------DINakD~~G~TPLh~Aa~~-~~~eive~LI~  483 (672)
T PHA02730        417 GRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMD------------DIDMIDNENKTLLYYAVDV-NNIQFARRLLE  483 (672)
T ss_pred             CCchHhHHHHHHhccccccccchhHHHHHHHHHhccc------------chhccCCCCCCHHHHHHHh-CCHHHHHHHHH
Confidence            8999994   44333         2357999999999            6799999999999999985 66789999999


Q ss_pred             CCCCCCCCCCCccCCC-CCCCHHHHHHHc--CCHHHHHHHHHhhccc
Q 003109          702 DPQEIGPSSWNSILDA-SGHSPYSYALMK--NNHAYNKLVARKLADR  745 (847)
Q Consensus       702 ~p~~vGagA~vnarD~-~G~TPLHyAa~~--G~~eiIeLLl~K~a~~  745 (847)
                      +      ||++|++|. .|.||||+|+.+  |+.+++++|++++++.
T Consensus       484 ~------GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        484 Y------GASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             C------CCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            8      678999997 599999999984  7999999999998766

>PHA02917 ankyrin-like protein; Provisional

Probab=99.41  E-value=1.1e-12  Score=155.02  Aligned_cols=127  Identities=10%  Similarity=-0.028  Sum_probs=97.6

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHh-cc-ccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVE-GN-LSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY  668 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~-g~-vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~  668 (847)
                      .++|||+|+..|+..+++.++..+.. ++ ++++          ...+++|.|+.+++.+||++||++|+          
T Consensus        68 g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~----------~~~~~~~~a~~~~~~e~vk~Ll~~Ga----------  127 (661)
T PHA02917         68 QLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN----------DFNIFSYMKSKNVDVDLIKVLVEHGF----------  127 (661)
T ss_pred             CCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC----------CcchHHHHHhhcCCHHHHHHHHHcCC----------
Confidence            45899999988887766655554432 12 1221          12367788888889999999999988          


Q ss_pred             CCCCCCCCCCCChHHHHHH-hcCCcHHHHHHHhCCCCCCCCCCCCccCCC---CC-----------CCHHHHHHH-----
Q 003109          669 IFPPNLAGPGGITPLHLAA-CTSDSDDIIDALTNDPQEIGPSSWNSILDA---SG-----------HSPYSYALM-----  728 (847)
Q Consensus       669 l~d~na~d~~G~TPLHlAA-~~~g~e~VveLLL~~p~~vGagA~vnarD~---~G-----------~TPLHyAa~-----  728 (847)
                        ++|.+|..|+||||+|+ ..+++.+|+++|+++      ||++|.+|.   .|           .||||||+.     
T Consensus       128 --din~~d~~g~T~L~~~~a~~~~~~eivklLi~~------Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~  199 (661)
T PHA02917        128 --DLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN------GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYS  199 (661)
T ss_pred             --CCCccCCCCccHHHHHHHccCCCHHHHHHHHHc------CCCccccccccccccccccccccccccHHHHHHhhcccc
Confidence              68999999999999654 446789999999998      577876654   35           499999986     


Q ss_pred             ------cCCHHHHHHHHHhhccc
Q 003109          729 ------KNNHAYNKLVARKLADR  745 (847)
Q Consensus       729 ------~G~~eiIeLLl~K~a~~  745 (847)
                            +|+.+++++|++.+++.
T Consensus       200 ~~~~~~~~~~eiv~~Li~~Gadv  222 (661)
T PHA02917        200 ESDTRAYVRPEVVKCLINHGIKP  222 (661)
T ss_pred             cccccccCcHHHHHHHHHCCCCc
Confidence                  57899999999998876

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.40  E-value=3.9e-13  Score=142.67  Aligned_cols=107  Identities=23%  Similarity=0.238  Sum_probs=93.0

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      .|||||+..|+.++++.||..+.    .++..     ++ +..||||.|+..||.+||..||++.+            |+
T Consensus        36 splhwaakegh~aivemll~rga----rvn~t-----nm-gddtplhlaaahghrdivqkll~~ka------------dv   93 (448)
T KOG0195|consen   36 SPLHWAAKEGHVAIVEMLLSRGA----RVNST-----NM-GDDTPLHLAAAHGHRDIVQKLLSRKA------------DV   93 (448)
T ss_pred             chhhhhhhcccHHHHHHHHhccc----ccccc-----cC-CCCcchhhhhhcccHHHHHHHHHHhc------------cc
Confidence            79999999999999999999753    33322     34 57899999999999999999999988            68


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHH
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALM  728 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~  728 (847)
                      |+.+..|.|||||||. -|.+.|.+-|++.      ||-++..+++|.|||+.|--
T Consensus        94 navnehgntplhyacf-wgydqiaedli~~------ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   94 NAVNEHGNTPLHYACF-WGYDQIAEDLISC------GAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             chhhccCCCchhhhhh-hcHHHHHHHHHhc------cceeeecccCCCCchhhhch
Confidence            9999999999999987 5889999999987      45689999999999998754

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.40  E-value=8.3e-13  Score=130.18  Aligned_cols=95  Identities=13%  Similarity=0.025  Sum_probs=79.3

Q ss_pred             cCchHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcH--HHHHHHhCCCCCC
Q 003109          633 WEIQLLNRAVKMKCR----RMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSD--DIIDALTNDPQEI  706 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~----eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e--~VveLLL~~p~~v  706 (847)
                      .+.+.||+|++.|+.    +++++|+++|+            +++.+|..|+||||+||..+..+  +++++|+.+    
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~------------~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~----   82 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGH------------LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNM----   82 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcch------------hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHc----
Confidence            467899999999998    77778888887            46788999999999999864333  247899887    


Q ss_pred             CCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHH-hhccc
Q 003109          707 GPSSWNSILD-ASGHSPYSYALMKNNHAYNKLVAR-KLADR  745 (847)
Q Consensus       707 GagA~vnarD-~~G~TPLHyAa~~G~~eiIeLLl~-K~a~~  745 (847)
                        ++++|.+| ..|.||||+|+.+|+.+++++|+. .+++.
T Consensus        83 --Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~  121 (166)
T PHA02743         83 --GADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNL  121 (166)
T ss_pred             --CCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc
Confidence              57899998 589999999999999999999985 55553

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.39  E-value=1.1e-12  Score=141.98  Aligned_cols=94  Identities=15%  Similarity=0.173  Sum_probs=82.7

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCC----CCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLA----GPGGITPLHLAACTSDSDDIIDALTNDPQEIGP  708 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~----d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGa  708 (847)
                      +-.++||.|++.|+.++|++||++||            ++|.+    +..|.||||+||.. +..+++++|+++      
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~GA------------diN~~~~~sd~~g~TpLh~Aa~~-~~~eivklLL~~------   92 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLGA------------DPEAPFPLSENSKTNPLIYAIDC-DNDDAAKLLIRY------   92 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCCC------------CccccCcccCCCCCCHHHHHHHc-CCHHHHHHHHHc------
Confidence            34578899999999999999999999            46665    46899999999985 677899999998      


Q ss_pred             CCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          709 SSWNSILD-ASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       709 gA~vnarD-~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ||++|+++ ..|.||||+|+..|+.+++++|+.++++-
T Consensus        93 GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdi  130 (300)
T PHA02884         93 GADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADI  130 (300)
T ss_pred             CCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            67899974 58999999999999999999999998876

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.39  E-value=1.9e-12  Score=124.89  Aligned_cols=126  Identities=21%  Similarity=0.146  Sum_probs=106.4

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC-----RRMVDLLIHYSLTSSNDTP  665 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~-----~eIVeLLL~~GA~~~~~s~  665 (847)
                      ...++++++..+...+++.|+...    ++.+..     +. .|.|+||+|+..++     .+++++||++|++      
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~-----~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~------  136 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASG----ADVNAK-----DA-DGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD------  136 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcC----CCcccc-----cC-CCCcHHHHHHhcCCcccchHHHHHHHHHcCCC------
Confidence            568999999999999998888864    333322     22 59999999999999     9999999999982      


Q ss_pred             CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          666 QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       666 ~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                         ....+.++..|.||||+|+.. +..+++++|+..      +++++.+|..|.|++|+|+..|+.++++.+.+++
T Consensus       137 ---~~~~~~~~~~g~tpl~~A~~~-~~~~~~~~ll~~------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         137 ---LDVNNLRDEDGNTPLHWAALN-GDADIVELLLEA------GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ---CCCccccCCCCCchhHHHHHc-CchHHHHHHHhc------CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence               013567799999999999986 566899999987      5678999999999999999999999999999876

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=2.8e-13  Score=147.27  Aligned_cols=102  Identities=22%  Similarity=0.212  Sum_probs=85.4

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCc----------------------CC---CCCCCC-CCCChHHHH
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSL-TSSNDTPQKY----------------------IF---PPNLAG-PGGITPLHL  685 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA-~~~~~s~~~~----------------------l~---d~na~d-~~G~TPLHl  685 (847)
                      +|+|+|||||.+.|.++|..||+.|. ++...+-.+|                      +|   ++|++. ..|+|+|++
T Consensus       267 NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALML  346 (452)
T KOG0514|consen  267 NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALML  346 (452)
T ss_pred             CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhh
Confidence            69999999999999999999999987 2211111222                      22   678874 689999999


Q ss_pred             HHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 003109          686 AACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  741 (847)
Q Consensus       686 AA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K  741 (847)
                      |+.+ |..++|++|+..      |||||..|++|.|+|.+||.+||.+|+++|+..
T Consensus       347 AVSH-Gr~d~vk~LLac------gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  347 AVSH-GRVDMVKALLAC------GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hhhc-CcHHHHHHHHHc------cCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            9995 788899999986      689999999999999999999999999999864

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.39  E-value=3.8e-12  Score=112.67  Aligned_cols=121  Identities=23%  Similarity=0.230  Sum_probs=100.4

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      +.+++||+|+..|+..+++.|++....    ....     +. .|.|+||.|+..++.+++++|+++|+           
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~----~~~~-----~~-~g~~~l~~a~~~~~~~~~~~ll~~~~-----------   64 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGAD----VNAK-----DN-DGRTPLHLAAKNGHLEIVKLLLEKGA-----------   64 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC----CCcc-----CC-CCCcHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence            346899999999999999999986322    1111     23 58899999999999999999999987           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVA  739 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl  739 (847)
                       +++..+..|.||+|+|+.. +..+++++|++.      +.+.+..|..|.||+|+|...++.+++++|+
T Consensus        65 -~~~~~~~~~~~~l~~a~~~-~~~~~~~~L~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          65 -DVNARDKDGNTPLHLAARN-GNLDVVKLLLKH------GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             -CccccCCCCCCHHHHHHHc-CcHHHHHHHHHc------CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence             3567778999999999986 567899999987      3457888999999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=7.1e-13  Score=147.68  Aligned_cols=118  Identities=19%  Similarity=0.108  Sum_probs=103.2

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      +||--||-.|+.++||+|++..    +|.+.      ....|.|-||.|+.+||.+||++||+.||            |+
T Consensus       119 tPLraACfDG~leivKyLvE~g----ad~~I------anrhGhTcLmIa~ykGh~~I~qyLle~gA------------Dv  176 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHG----ADPEI------ANRHGHTCLMIACYKGHVDIAQYLLEQGA------------DV  176 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcC----CCCcc------cccCCCeeEEeeeccCchHHHHHHHHhCC------------Cc
Confidence            8999999999999999999864    44332      23369999999999999999999999999            78


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVAR  740 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~  740 (847)
                      |.++..|.|+||.+|+ .|+.+|+++|+.+    |+.  + .+|..|.|||-.|+..|+.++|++|+.
T Consensus       177 n~ks~kGNTALH~caE-sG~vdivq~Ll~~----ga~--i-~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  177 NAKSYKGNTALHDCAE-SGSVDIVQLLLKH----GAK--I-DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             chhcccCchHHHhhhh-cccHHHHHHHHhC----Cce--e-eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999998 5788999999998    332  3 467889999999999999999999985

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.37  E-value=5.7e-13  Score=158.51  Aligned_cols=133  Identities=19%  Similarity=0.071  Sum_probs=100.8

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcH--HH------HhhccCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSR--ES------LEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS  661 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~--~~------~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~  661 (847)
                      ...+|||+|+.+|+.++++.||+.++    +++....  ..      .....|.||||.|+..|+.+++++|+++|+   
T Consensus       127 ~G~TpLhlAa~~~~~eiVklLL~~GA----dv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga---  199 (743)
T TIGR00870       127 PGITALHLAAHRQNYEIVKLLLERGA----SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA---  199 (743)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCC----CCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc---
Confidence            45699999999999999999999643    3321100  00      001248899999999999999999999998   


Q ss_pred             CCCCCCcCCCCCCCCCCCChHHHHHHhcCC--------cHHHHHHHhCCCCCCCCCCCC----ccCCCCCCCHHHHHHHc
Q 003109          662 NDTPQKYIFPPNLAGPGGITPLHLAACTSD--------SDDIIDALTNDPQEIGPSSWN----SILDASGHSPYSYALMK  729 (847)
Q Consensus       662 ~~s~~~~l~d~na~d~~G~TPLHlAA~~~g--------~e~VveLLL~~p~~vGagA~v----narD~~G~TPLHyAa~~  729 (847)
                               |+|++|..|+||||+|+..+.        ...+.+++++..+.   ..+.    +.+|.+|.||||+|+..
T Consensus       200 ---------din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~---~~~~~el~~i~N~~g~TPL~~A~~~  267 (743)
T TIGR00870       200 ---------DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK---LRDSKELEVILNHQGLTPLKLAAKE  267 (743)
T ss_pred             ---------chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc---cCChHhhhhhcCCCCCCchhhhhhc
Confidence                     678999999999999998531        22345555544211   1223    67899999999999999


Q ss_pred             CCHHHHHHHHHh
Q 003109          730 NNHAYNKLVARK  741 (847)
Q Consensus       730 G~~eiIeLLl~K  741 (847)
                      |+.+++++|+..
T Consensus       268 g~~~l~~lLL~~  279 (743)
T TIGR00870       268 GRIVLFRLKLAI  279 (743)
T ss_pred             CCccHHHHHHHH
Confidence            999999988874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.37  E-value=8.6e-13  Score=160.93  Aligned_cols=93  Identities=19%  Similarity=0.237  Sum_probs=75.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  713 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vn  713 (847)
                      +.++||.|...+...++..|+++|+            ++|.++..|.||||+|+.. |+.++|+.|+++      +|+++
T Consensus       507 ~l~~lhla~~~~~v~~~~~l~~~ga------------~v~~~~~r~~TpLh~A~~~-g~v~~VkfLLe~------gAdv~  567 (1143)
T KOG4177|consen  507 GLTPLHLAADEDTVKVAKILLEHGA------------NVDLRTGRGYTPLHVAVHY-GNVDLVKFLLEH------GADVN  567 (1143)
T ss_pred             ccchhhhhhhhhhHHHHHHHhhcCC------------ceehhcccccchHHHHHhc-CCchHHHHhhhC------Ccccc
Confidence            4455555555555555555555554            5688999999999999985 677899999999      67899


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          714 ILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       714 arD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|+.|+||||.||..|+.+++++|.+.+++.
T Consensus       568 ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v  599 (1143)
T KOG4177|consen  568 AKDKLGYTPLHQAAQQGHNDIAELLLKHGASV  599 (1143)
T ss_pred             ccCCCCCChhhHHHHcChHHHHHHHHHcCCCC
Confidence            99999999999999999999999999998887

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.36  E-value=1.8e-12  Score=129.98  Aligned_cols=121  Identities=20%  Similarity=0.166  Sum_probs=101.2

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      .+|||-|+.+|+..+|+.||-..++    .+.      ....|+||||-||+.++.+++-+||.+|+            |
T Consensus        98 YTpLHRAaYn~h~div~~ll~~gAn----~~a------~T~~GWTPLhSAckWnN~~va~~LLqhga------------D  155 (228)
T KOG0512|consen   98 YTPLHRAAYNGHLDIVHELLLSGAN----KEA------KTNEGWTPLHSACKWNNFEVAGRLLQHGA------------D  155 (228)
T ss_pred             ccHHHHHHhcCchHHHHHHHHccCC----ccc------ccccCccchhhhhcccchhHHHHHHhccC------------c
Confidence            3999999999999999999987543    221      22359999999999999999999999999            6


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHH-HHHH
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYN-KLVA  739 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiI-eLLl  739 (847)
                      +|+...+-+||||+||...+..+.+.+|+.++..     ..-.++..|.||+.+|.+.|-..++ +.+.
T Consensus       156 VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi-----~pg~~nn~eeta~~iARRT~~s~~lfe~~e  219 (228)
T KOG0512|consen  156 VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYI-----HPGLKNNLEETAFDIARRTSMSHYLFEIVE  219 (228)
T ss_pred             ccccccccchhhHHhhcccchHHHHHHHhhcccc-----ChhhhcCccchHHHHHHHhhhhHHHHHHHH
Confidence            8999999999999999988888899999887532     3456788999999999999877665 4443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.34  E-value=2.3e-12  Score=150.54  Aligned_cols=132  Identities=14%  Similarity=0.090  Sum_probs=105.2

Q ss_pred             HHHHH-HHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHH-cCCHHHHHHHHHcCCCCC----CCCC-
Q 003109          593 FLLVF-SVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVK-MKCRRMVDLLIHYSLTSS----NDTP-  665 (847)
Q Consensus       593 ~LL~F-AvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~-~g~~eIVeLLL~~GA~~~----~~s~-  665 (847)
                      .++|+ |..+|+.++||.|+..+    ++++..     +. ++.||||+|+. .++.+||++||++||+.+    .|.. 
T Consensus        73 ~~~~~~~s~n~~lElvk~LI~~G----AdvN~~-----~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~  142 (631)
T PHA02792         73 DIFEYLCSDNIDIELLKLLISKG----LEINSI-----KN-GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKI  142 (631)
T ss_pred             cHHHHHHHhcccHHHHHHHHHcC----CCcccc-----cC-CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcch
Confidence            36766 77889999999999964    455433     23 47899999976 699999999999999732    1111 


Q ss_pred             -------------------CCcCCCCCCCCCCCChHHHHHHhcCC-------cHHHHHHHhCCCCCCCCCCCCccCCCCC
Q 003109          666 -------------------QKYIFPPNLAGPGGITPLHLAACTSD-------SDDIIDALTNDPQEIGPSSWNSILDASG  719 (847)
Q Consensus       666 -------------------~~~l~d~na~d~~G~TPLHlAA~~~g-------~e~VveLLL~~p~~vGagA~vnarD~~G  719 (847)
                                         ..|....|..|..|.||||+|+.. +       ..+|+++|+++      ||+++.+|..|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~-~s~~~~~~~~~v~k~Li~~------g~~~~~~d~~g  215 (631)
T PHA02792        143 IIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIIT-RSQDGYATSLDVINYLISH------EKEMRYYTYRE  215 (631)
T ss_pred             hhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhh-CCcccccCCHHHHHHHHhC------CCCcCccCCCC
Confidence                               011234578899999999999985 4       58899999999      56799999999


Q ss_pred             CCHHHHHHHcC--CHHHHHHHHHh
Q 003109          720 HSPYSYALMKN--NHAYNKLVARK  741 (847)
Q Consensus       720 ~TPLHyAa~~G--~~eiIeLLl~K  741 (847)
                      .||||||+.+.  ..+++++|.+-
T Consensus       216 ~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        216 HTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             ChHHHHHHHcccchHHHHHHHHhc
Confidence            99999999999  88999998864

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.34  E-value=3.2e-12  Score=152.16  Aligned_cols=132  Identities=21%  Similarity=0.141  Sum_probs=87.3

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCC----CcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDG----LSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTP-  665 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~----~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~-  665 (847)
                      .+++||.|+. ++...++.++..+.+.+.+.+.    ......+...|.||||.|+.+|+.++|++||++||+++.... 
T Consensus        82 G~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~  160 (743)
T TIGR00870        82 GDTLLHAISL-EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACG  160 (743)
T ss_pred             ChHHHHHHHh-ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCC
Confidence            4589998886 4444455555544332211000    000001122589999999999999999999999996421000 


Q ss_pred             CCcCCCC-CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcC
Q 003109          666 QKYIFPP-NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN  730 (847)
Q Consensus       666 ~~~l~d~-na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G  730 (847)
                      ..+.... ......|.||||+|+.. ++.+++++|+++      +||+|++|..|+||||+|+..+
T Consensus       161 ~~~~~~~~~~~~~~g~tpL~~Aa~~-~~~~iv~lLl~~------gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       161 DFFVKSQGVDSFYHGESPLNAAACL-GSPSIVALLSED------PADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             chhhcCCCCCcccccccHHHHHHHh-CCHHHHHHHhcC------CcchhhHhhhhhHHHHHHHhhh
Confidence            0000000 01124699999999986 678899999998      4689999999999999999987

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.33  E-value=1.1e-12  Score=126.37  Aligned_cols=99  Identities=13%  Similarity=0.097  Sum_probs=74.2

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcH--HHHHHHhCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSD--DIIDALTNDPQEIGPSS  710 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e--~VveLLL~~p~~vGagA  710 (847)
                      .|.||||+||+.|+  ++++|+..+....   ..  ...++.+|..|+||||+||..+..+  +++++|+.+      ++
T Consensus        16 ~g~tpLh~A~~~g~--~~~l~~~~~~~~~---~~--~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~------ga   82 (154)
T PHA02736         16 EGENILHYLCRNGG--VTDLLAFKNAISD---EN--RYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW------GA   82 (154)
T ss_pred             CCCCHHHHHHHhCC--HHHHHHHHHHhcc---hh--HHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc------CC
Confidence            58999999999998  5677665543110   00  0012456889999999999854322  467888887      57


Q ss_pred             CCccCCC-CCCCHHHHHHHcCCHHHHHHHHHh-hcc
Q 003109          711 WNSILDA-SGHSPYSYALMKNNHAYNKLVARK-LAD  744 (847)
Q Consensus       711 ~vnarD~-~G~TPLHyAa~~G~~eiIeLLl~K-~a~  744 (847)
                      ++|.+|. +|.||||+|+..|+.+++++|+.+ +++
T Consensus        83 din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d  118 (154)
T PHA02736         83 DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN  118 (154)
T ss_pred             CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            8999984 999999999999999999999864 444

>PHA02792 ankyrin-like protein; Provisional

Probab=99.33  E-value=6.7e-12  Score=146.71  Aligned_cols=146  Identities=14%  Similarity=0.030  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHhchhhhcccccccccCCccchhhhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhc-cCch
Q 003109          558 REEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEML-WEIQ  636 (847)
Q Consensus       558 Re~al~FL~ELGwLLqrs~~~~~~~v~~fsi~R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l-~g~T  636 (847)
                      +-++.+||.+.|.-+-+.              .....++.|+.+|..+++++|+..+    ++++..     +.. .+.|
T Consensus       320 ~ieiIK~LId~Ga~~~r~--------------~~~n~~~~Aa~~gn~eIVelLIs~G----ADIN~k-----D~~g~~~T  376 (631)
T PHA02792        320 YINVIKCMIDEGATLYRF--------------KHINKYFQKFDNRDPKVVEYILKNG----NVVVED-----DDNIINIM  376 (631)
T ss_pred             cHHHHHHHHHCCCccccC--------------CcchHHHHHHHcCCHHHHHHHHHcC----Cchhhh-----cCCCCChh
Confidence            347888888888543211              0124578899999999999999964    444322     221 2569


Q ss_pred             HHHHHHHcCCHH---HHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 003109          637 LLNRAVKMKCRR---MVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  713 (847)
Q Consensus       637 pLH~AV~~g~~e---IVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vn  713 (847)
                      |||.|+..+..+   ++++|+++||            ++|.+|..|+||||+|+.. +..+++++|+++      ||++|
T Consensus       377 pLh~A~~n~~~~v~~IlklLIs~GA------------DIN~kD~~G~TPLh~Aa~~-~n~eivelLLs~------GADIN  437 (631)
T PHA02792        377 PLFPTLSIHESDVLSILKLCKPYID------------DINKIDKHGRSILYYCIES-HSVSLVEWLIDN------GADIN  437 (631)
T ss_pred             HHHHHHHhccHhHHHHHHHHHhcCC------------ccccccccCcchHHHHHHc-CCHHHHHHHHHC------CCCCC
Confidence            999988776654   6899999998            6799999999999999985 677899999998      57899


Q ss_pred             cCCCCCCCHHHHHHH---cC-------CHHHHHHHHHhhccc
Q 003109          714 ILDASGHSPYSYALM---KN-------NHAYNKLVARKLADR  745 (847)
Q Consensus       714 arD~~G~TPLHyAa~---~G-------~~eiIeLLl~K~a~~  745 (847)
                      ++|..|.||||+|+.   ++       +.+++++|++++.+.
T Consensus       438 ~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        438 ITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             CcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            999999999999976   22       245577777776443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.33  E-value=2.3e-12  Score=145.50  Aligned_cols=149  Identities=17%  Similarity=0.110  Sum_probs=120.9

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCC----CCC--
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN----DTP--  665 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~----~s~--  665 (847)
                      -+.||-+|...+.++|++|++...+    ++..     +. .++||||.|+.-||..||++||.+||+...    +..  
T Consensus        74 lTalhq~~id~~~e~v~~l~e~ga~----Vn~~-----d~-e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~  143 (527)
T KOG0505|consen   74 LTALHQACIDDNLEMVKFLVENGAN----VNAQ-----DN-EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPY  143 (527)
T ss_pred             chhHHHHHhcccHHHHHHHHHhcCC----cccc-----cc-ccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcc
Confidence            3899999999999999999998533    3321     22 599999999999999999999999996311    100  


Q ss_pred             -----------------------------------------CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCC
Q 003109          666 -----------------------------------------QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQ  704 (847)
Q Consensus       666 -----------------------------------------~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~  704 (847)
                                                               ....-..++.+..|-|.||+|+. +|..+++++|+.+  
T Consensus       144 dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa-~Gy~e~~~lLl~a--  220 (527)
T KOG0505|consen  144 DLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAA-NGYTEVAALLLQA--  220 (527)
T ss_pred             ccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHh-hhHHHHHHHHHHh--
Confidence                                                     00112457777779999999998 5888999999998  


Q ss_pred             CCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCccccccCcc
Q 003109          705 EIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGVE  757 (847)
Q Consensus       705 ~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~----~~~~v~~~i~~~  757 (847)
                          +.+++++|.+||||||+|+.=|+.+.+++|+..+++.    .+|+-.+++-..
T Consensus       221 ----g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  221 ----GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ----ccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence                4579999999999999999999999999999998877    478888888755

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.33  E-value=5.1e-12  Score=152.57  Aligned_cols=92  Identities=21%  Similarity=0.261  Sum_probs=83.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  713 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vn  713 (847)
                      +.++||.||..|+.++++.||++|+            ++|.+|..|.||||+||.. |+.+++++|+++      |+++|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~------------d~n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~------gadin  585 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKL------------DPDIGDSKGRTPLHIAASK-GYEDCVLVLLKH------ACNVH  585 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCC------------CCCCCCCCCCCHHHHHHHc-ChHHHHHHHHhc------CCCCC
Confidence            4688999999999999999999998            6799999999999999985 778899999998      57899


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          714 ILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       714 arD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      .+|.+|.||||+|+..||.+++++|.+.++.
T Consensus       586 ~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~  616 (823)
T PLN03192        586 IRDANGNTALWNAISAKHHKIFRILYHFASI  616 (823)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcc
Confidence            9999999999999999999999999876543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.28  E-value=2.9e-11  Score=107.09  Aligned_cols=91  Identities=25%  Similarity=0.226  Sum_probs=81.7

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.|+||+|++.++.++++.|+++++            +.+..+..|.||||+|+.. +..+++++|+.+      ++++
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~------------~~~~~~~~g~~~l~~a~~~-~~~~~~~~ll~~------~~~~   66 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGA------------DVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEK------GADV   66 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCC------------CCCccCCCCCcHHHHHHHc-CCHHHHHHHHHc------CCCc
Confidence            48899999999999999999999997            3367888999999999986 456799999987      3468


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                      +..|..|.||+|+|+..++.+++++|++++
T Consensus        67 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~   96 (126)
T cd00204          67 NARDKDGNTPLHLAARNGNLDVVKLLLKHG   96 (126)
T ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            899999999999999999999999999986

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.21  E-value=3.9e-11  Score=142.12  Aligned_cols=87  Identities=21%  Similarity=0.240  Sum_probs=81.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccC
Q 003109          636 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  715 (847)
Q Consensus       636 TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnar  715 (847)
                      +.||.|+..|+.++|++||++|+            ++|.+|..|.||||+||. .|+.+++++|+++      ||++|++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Ga------------din~~d~~G~TpLh~Aa~-~g~~eiv~~LL~~------Gadvn~~  144 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGA------------DPNCRDYDGRTPLHIACA-NGHVQVVRVLLEF------GADPTLL  144 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC------------CCCCcCCCCCcHHHHHHH-CCCHHHHHHHHHC------CCCCCCC
Confidence            56899999999999999999998            578999999999999998 4778899999987      5789999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHh
Q 003109          716 DASGHSPYSYALMKNNHAYNKLVARK  741 (847)
Q Consensus       716 D~~G~TPLHyAa~~G~~eiIeLLl~K  741 (847)
                      |.+|.||||+|+.+|+.+++++|+++
T Consensus       145 d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        145 DKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence            99999999999999999999999987

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.17  E-value=3.2e-11  Score=140.47  Aligned_cols=121  Identities=21%  Similarity=0.118  Sum_probs=105.5

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      -++||.|+-+|+..++++||+.-.-  +++       .+. .|++|||+|+..|+.++|++||.++.            .
T Consensus        50 fTalhha~Lng~~~is~llle~ea~--ldl-------~d~-kg~~plhlaaw~g~~e~vkmll~q~d------------~  107 (854)
T KOG0507|consen   50 FTLLHHAVLNGQNQISKLLLDYEAL--LDL-------CDT-KGILPLHLAAWNGNLEIVKMLLLQTD------------I  107 (854)
T ss_pred             hhHHHHHHhcCchHHHHHHhcchhh--hhh-------hhc-cCcceEEehhhcCcchHHHHHHhccc------------C
Confidence            4899999999999999999995211  111       132 58999999999999999999999985            4


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  741 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K  741 (847)
                      +|+....|.||||+||+. ++.+|+.+|+.+      ++|.-.+|+++.|+|++|++-|..++|++|+++
T Consensus       108 ~na~~~e~~tplhlaaqh-gh~dvv~~Ll~~------~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  108 LNAVNIENETPLHLAAQH-GHLEVVFYLLKK------NADPFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             CCcccccCcCccchhhhh-cchHHHHHHHhc------CCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            689999999999999985 777899999998      578889999999999999999999999999887

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.17  E-value=4.5e-11  Score=97.06  Aligned_cols=54  Identities=31%  Similarity=0.401  Sum_probs=44.0

Q ss_pred             CChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003109          679 GITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVA  739 (847)
Q Consensus       679 G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl  739 (847)
                      |+||||+||. .|..++++.|+++      ++++|.+|.+|+||||+|+++||.+++++|+
T Consensus         1 g~t~lh~A~~-~g~~~~~~~Ll~~------~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAAR-SGNLEIVKLLLEH------GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHH-TT-HHHHHHHHHT------TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHH-hCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999998 4778899999987      5689999999999999999999999999985

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.15  E-value=2.1e-11  Score=100.57  Aligned_cols=49  Identities=29%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHH
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYA  726 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyA  726 (847)
                      ++|.+|..|.||||+||.. |+.+++++|+..      +++++++|..|+||||||
T Consensus         8 ~~n~~d~~G~T~LH~A~~~-g~~~~v~~Ll~~------g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    8 DVNAQDKYGNTPLHWAARY-GHSEVVRLLLQN------GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -TT---TTS--HHHHHHHH-T-HHHHHHHHHC------T--TT---TTS--HHHH-
T ss_pred             CCcCcCCCCCcHHHHHHHc-CcHHHHHHHHHC------cCCCCCCcCCCCCHHHhC
Confidence            6899999999999999985 778899999966      578999999999999998

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.13  E-value=2.9e-11  Score=140.73  Aligned_cols=146  Identities=20%  Similarity=0.212  Sum_probs=112.4

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhc-cccCCCC--cHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEG-NLSMDGL--SRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g-~vdid~~--s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      .=|.-|++.|....+..||..-..+ +.-....  ..+..+...|.|+||.||.+|+.+++++|+++.+           
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea-----------   73 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA-----------   73 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchh-----------
Confidence            3455789999999999998852211 1000000  0111223379999999999999999999999987           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----  745 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~----  745 (847)
                       -++..|..|.+|||+||+. |+.+++++|+.+      ++.+|+....|.||||.|+++||.+++++|++++++.    
T Consensus        74 -~ldl~d~kg~~plhlaaw~-g~~e~vkmll~q------~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~n  145 (854)
T KOG0507|consen   74 -LLDLCDTKGILPLHLAAWN-GNLEIVKMLLLQ------TDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRN  145 (854)
T ss_pred             -hhhhhhccCcceEEehhhc-CcchHHHHHHhc------ccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccC
Confidence             3577788999999999996 555699999887      2458999999999999999999999999999999998    


Q ss_pred             cCCccccccCcc
Q 003109          746 RNGQVTIPVGVE  757 (847)
Q Consensus       746 ~~~~v~~~i~~~  757 (847)
                      .+++-+++....
T Consensus       146 ns~~t~ldlA~q  157 (854)
T KOG0507|consen  146 NSKETVLDLASR  157 (854)
T ss_pred             cccccHHHHHHH
Confidence            256777777644

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.09  E-value=1.6e-10  Score=93.82  Aligned_cols=54  Identities=30%  Similarity=0.294  Sum_probs=43.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHh
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALT  700 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL  700 (847)
                      |+||||+|++.|+.+++++|+++|+            ++|.+|..|.||||+|+.. |+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~------------din~~d~~g~t~lh~A~~~-g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA------------DINAQDEDGRTPLHYAAKN-GNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS------------GTT-B-TTS--HHHHHHHT-T-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC------------CCCCCCCCCCCHHHHHHHc-cCHHHHHHHC
Confidence            6899999999999999999999987            6788999999999999985 6788999885

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.09  E-value=4.8e-10  Score=108.20  Aligned_cols=96  Identities=25%  Similarity=0.302  Sum_probs=84.3

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCc-----HHHHHHHhCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDS-----DDIIDALTNDPQEIG  707 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~-----e~VveLLL~~p~~vG  707 (847)
                      .+.+++|.|+..+..+++++|+..|+            +++.++..|.||||+|+.. +.     .+++++|+..    |
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~~~ll~~----g  134 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGA------------DVNAKDADGDTPLHLAALN-GNPPEGNIEVAKLLLEA----G  134 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCC------------CcccccCCCCcHHHHHHhc-CCcccchHHHHHHHHHc----C
Confidence            37899999999999999999999998            5789999999999999985 55     7799999987    3


Q ss_pred             C-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          708 P-SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       708 a-gA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      + ....+.+|.+|.||||+|+..|+.+++++|+..+++.
T Consensus       135 ~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~  173 (235)
T COG0666         135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP  173 (235)
T ss_pred             CCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCC
Confidence            2 0256777999999999999999999999999997765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.03  E-value=1e-09  Score=130.20  Aligned_cols=113  Identities=17%  Similarity=0.129  Sum_probs=92.7

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      ...|+.|+..|....++.|++..    ++++..     +. .|.||||+||.+|+.++|++||++|+            +
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~G----adin~~-----d~-~G~TpLh~Aa~~g~~eiv~~LL~~Ga------------d  140 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGG----ADPNCR-----DY-DGRTPLHIACANGHVQVVRVLLEFGA------------D  140 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCC----CCCCCc-----CC-CCCcHHHHHHHCCCHHHHHHHHHCCC------------C
Confidence            45688999999999999999853    444422     23 58999999999999999999999998            6


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCC-CCCCCCCCccCCCCCCCHHHHHH
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQ-EIGPSSWNSILDASGHSPYSYAL  727 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~-~vGagA~vnarD~~G~TPLHyAa  727 (847)
                      +|.+|..|.||||+|+.. +..+++++|+.+.. .+..+|+.+..+.+|.||+-.+.
T Consensus       141 vn~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        141 PTLLDKDGKTPLELAEEN-GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCCCCCCCCHHHHHHHC-CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            789999999999999985 67789999987622 13457788889998988877655

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.99  E-value=2.6e-09  Score=114.08  Aligned_cols=127  Identities=17%  Similarity=0.206  Sum_probs=103.5

Q ss_pred             chhhhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 003109          587 SLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQ  666 (847)
Q Consensus       587 si~R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~  666 (847)
                      ++.--+.+|.-++++|..+.+..||....+  +.-       ++. .||++|..|+.+|+.++|++||++|+|++     
T Consensus         8 qld~~~~~Lle~i~Kndt~~a~~LLs~vr~--vn~-------~D~-sGMs~LahAaykGnl~~v~lll~~gaDvN-----   72 (396)
T KOG1710|consen    8 QLDAPKSPLLEAIDKNDTEAALALLSTVRQ--VNQ-------RDP-SGMSVLAHAAYKGNLTLVELLLELGADVN-----   72 (396)
T ss_pred             cccchhhHHHHHHccCcHHHHHHHHHHhhh--hhc-------cCC-CcccHHHHHHhcCcHHHHHHHHHhCCCcC-----
Confidence            444456788899999999999999997543  211       122 59999999999999999999999999532     


Q ss_pred             CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 003109          667 KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  741 (847)
Q Consensus       667 ~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K  741 (847)
                            +-++..+.||||+||. .|..+|..+|++.      ||.....+.-|+|+-..||--||.+.|.++-+.
T Consensus        73 ------~~qhg~~YTpLmFAAL-SGn~dvcrlllda------Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   73 ------DKQHGTLYTPLMFAAL-SGNQDVCRLLLDA------GARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             ------cccccccccHHHHHHH-cCCchHHHHHHhc------cCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence                  2357789999999998 5788899999987      455778889999999999999999999877554

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.98  E-value=1.9e-09  Score=127.06  Aligned_cols=142  Identities=21%  Similarity=0.222  Sum_probs=95.2

Q ss_pred             hhhHHHHHHHhc---CchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 003109          590 RFKFLLVFSVDR---GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQ  666 (847)
Q Consensus       590 R~k~LL~FAvdr---Gw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~  666 (847)
                      ..+++||.|.-+   ++.++++.||+...+  .-.+..-   -+...|.|+||.|+.+.+.++|++||+.|||++. .+.
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~--lind~~~---~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~a-Ra~  215 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPK--LINDIYT---SEEYYGQSALHIAIVNRDAELVRLLLAAGADVHA-RAC  215 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHH--Hhhhhhh---hHhhcCcchHHHHHHhccHHHHHHHHHcCCchhh-Hhh
Confidence            357999999974   466999999997543  1111111   1223599999999999999999999999998531 111


Q ss_pred             CcCCCCCCC----------C--CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHH
Q 003109          667 KYIFPPNLA----------G--PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAY  734 (847)
Q Consensus       667 ~~l~d~na~----------d--~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~ei  734 (847)
                      |--|.++-+          |  .-|..||-+||+. +.++|+.+|+.+      +||+|++|.+|.|-||.-+..-..++
T Consensus       216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~-nq~eivrlLl~~------gAd~~aqDS~GNTVLH~lVi~~~~~M  288 (782)
T KOG3676|consen  216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACT-NQPEIVRLLLAH------GADPNAQDSNGNTVLHMLVIHFVTEM  288 (782)
T ss_pred             ccccCcccccccccccCCcceeeeccCchHHHHHc-CCHHHHHHHHhc------CCCCCccccCCChHHHHHHHHHHHHH
Confidence            111222211          1  1377888888886 456688888876      56777777777777777776655555


Q ss_pred             HHHHHHhhcc
Q 003109          735 NKLVARKLAD  744 (847)
Q Consensus       735 IeLLl~K~a~  744 (847)
                      -.+++.++++
T Consensus       289 y~~~L~~ga~  298 (782)
T KOG3676|consen  289 YDLALELGAN  298 (782)
T ss_pred             HHHHHhcCCC
Confidence            5666666655

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.97  E-value=8.8e-10  Score=101.41  Aligned_cols=88  Identities=27%  Similarity=0.204  Sum_probs=77.7

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCC
Q 003109          638 LNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA  717 (847)
Q Consensus       638 LH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~  717 (847)
                      ..|++++|..+-|+-....|-            ++|-. .+|+|||||||-. |...|+++|+.-      ||+++.+|+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~------------nVn~~-~ggR~plhyAAD~-GQl~ilefli~i------GA~i~~kDK   65 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGL------------NVNEI-YGGRTPLHYAADY-GQLSILEFLISI------GANIQDKDK   65 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccc------------cHHHH-hCCcccchHhhhc-chHHHHHHHHHh------ccccCCccc
Confidence            568999999999999988875            34433 3899999999986 566799999886      678999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          718 SGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       718 ~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|-|||--|+.-||.+.|++|++++++|
T Consensus        66 ygITPLLsAvwEGH~~cVklLL~~GAdr   93 (117)
T KOG4214|consen   66 YGITPLLSAVWEGHRDCVKLLLQNGADR   93 (117)
T ss_pred             cCCcHHHHHHHHhhHHHHHHHHHcCccc
Confidence            9999999999999999999999999998

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.97  E-value=1.5e-09  Score=100.01  Aligned_cols=102  Identities=20%  Similarity=0.191  Sum_probs=85.5

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCC
Q 003109          595 LVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNL  674 (847)
Q Consensus       595 L~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na  674 (847)
                      ..|++.+|-..-||......    .+++       +..+|++|||+|+-.|..+|.++|+..||            +++.
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g----~nVn-------~~~ggR~plhyAAD~GQl~ilefli~iGA------------~i~~   62 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEG----LNVN-------EIYGGRTPLHYAADYGQLSILEFLISIGA------------NIQD   62 (117)
T ss_pred             HhhhhccCcHHHHHHHHHcc----ccHH-------HHhCCcccchHhhhcchHHHHHHHHHhcc------------ccCC
Confidence            46888899888888776642    2222       45589999999999999999999999999            5689


Q ss_pred             CCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHH
Q 003109          675 AGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYA  726 (847)
Q Consensus       675 ~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyA  726 (847)
                      +|+.|.|||--|+. .|+.+.|++|+..      ||+...+.-+|.|.+..+
T Consensus        63 kDKygITPLLsAvw-EGH~~cVklLL~~------GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   63 KDKYGITPLLSAVW-EGHRDCVKLLLQN------GADRTIHAPDGTALIEAT  107 (117)
T ss_pred             ccccCCcHHHHHHH-HhhHHHHHHHHHc------CcccceeCCCchhHHhhc
Confidence            99999999999998 4889999999998      577888889998887754

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.94  E-value=1.6e-09  Score=122.37  Aligned_cols=92  Identities=25%  Similarity=0.233  Sum_probs=80.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcc
Q 003109          635 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI  714 (847)
Q Consensus       635 ~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vna  714 (847)
                      .-+|.-|+..|-.++|+-.+..--            ||-..+..|+||||-|++. |+.+||++|++.      ||+||+
T Consensus       551 LaLLLDaaLeGEldlVq~~i~ev~------------DpSqpNdEGITaLHNAiCa-ghyeIVkFLi~~------ganVNa  611 (752)
T KOG0515|consen  551 LALLLDAALEGELDLVQRIIYEVT------------DPSQPNDEGITALHNAICA-GHYEIVKFLIEF------GANVNA  611 (752)
T ss_pred             HHHHHhhhhcchHHHHHHHHHhhc------------CCCCCCccchhHHhhhhhc-chhHHHHHHHhc------CCcccC
Confidence            456777889999999999886532            6667788999999999995 677799999987      679999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          715 LDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       715 rD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      .|.+||||||+||..|+.-+++.|...++..
T Consensus       612 ~DSdGWTPLHCAASCNnv~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  612 ADSDGWTPLHCAASCNNVPMCKQLVESGAAV  642 (752)
T ss_pred             ccCCCCchhhhhhhcCchHHHHHHHhccceE
Confidence            9999999999999999999999999888764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.92  E-value=3.6e-09  Score=124.70  Aligned_cols=132  Identities=16%  Similarity=0.164  Sum_probs=105.7

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhcc-------ccCCCCcHHHHh---------hccCchHHHHHHHcCCHHHHHHH
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGN-------LSMDGLSRESLE---------MLWEIQLLNRAVKMKCRRMVDLL  653 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~-------vdid~~s~~~~~---------~l~g~TpLH~AV~~g~~eIVeLL  653 (847)
                      +..++||.|+.+..++.|++||+..++-+       ++-+..  . ..         ..-|..||-+||--|+.+||++|
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dq--k-~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQ--K-ASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccc--c-ccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            45799999999999999999999754311       111100  0 01         11367999999999999999999


Q ss_pred             HHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHH
Q 003109          654 IHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHA  733 (847)
Q Consensus       654 L~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~e  733 (847)
                      +++||            |||++|..|.|-||.-+.. ...++-++++.+    |+.+....++.+|.|||.+||.-|..+
T Consensus       260 l~~gA------------d~~aqDS~GNTVLH~lVi~-~~~~My~~~L~~----ga~~l~~v~N~qgLTPLtLAaklGk~e  322 (782)
T KOG3676|consen  260 LAHGA------------DPNAQDSNGNTVLHMLVIH-FVTEMYDLALEL----GANALEHVRNNQGLTPLTLAAKLGKKE  322 (782)
T ss_pred             HhcCC------------CCCccccCCChHHHHHHHH-HHHHHHHHHHhc----CCCccccccccCCCChHHHHHHhhhHH
Confidence            99999            7899999999999998875 566788899988    333448899999999999999999999


Q ss_pred             HHHHHHHh
Q 003109          734 YNKLVARK  741 (847)
Q Consensus       734 iIeLLl~K  741 (847)
                      +-+.++++
T Consensus       323 mf~~ile~  330 (782)
T KOG3676|consen  323 MFQHILER  330 (782)
T ss_pred             HHHHHHHh
Confidence            99766655

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.91  E-value=2e-09  Score=122.25  Aligned_cols=126  Identities=19%  Similarity=0.129  Sum_probs=104.2

Q ss_pred             HHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCC
Q 003109          597 FSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAG  676 (847)
Q Consensus       597 FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d  676 (847)
                      -|+.+|-.+=++.||...    ++.+.      -..+|.|+||-||.-.+.+||++|+++|+            ++|+.|
T Consensus        46 ~A~~~~d~~ev~~ll~~g----a~~~~------~n~DglTalhq~~id~~~e~v~~l~e~ga------------~Vn~~d  103 (527)
T KOG0505|consen   46 EACSRGDLEEVRKLLNRG----ASPNL------CNVDGLTALHQACIDDNLEMVKFLVENGA------------NVNAQD  103 (527)
T ss_pred             hccccccHHHHHHHhccC----CCccc------cCCccchhHHHHHhcccHHHHHHHHHhcC------------Cccccc
Confidence            478888888889998864    22221      12369999999999999999999999999            579999


Q ss_pred             CCCChHHHHHHhcCCcHHHHHHHhCCCCC---------------------------------------------------
Q 003109          677 PGGITPLHLAACTSDSDDIIDALTNDPQE---------------------------------------------------  705 (847)
Q Consensus       677 ~~G~TPLHlAA~~~g~e~VveLLL~~p~~---------------------------------------------------  705 (847)
                      ..||||||.||.. ++.+|+..|+++.+.                                                   
T Consensus       104 ~e~wtPlhaaasc-g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~  182 (527)
T KOG0505|consen  104 NEGWTPLHAAASC-GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDAR  182 (527)
T ss_pred             cccCCcchhhccc-ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHH
Confidence            9999999999985 788899999988650                                                   


Q ss_pred             --CCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          706 --IGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       706 --vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                        .-+|+..++++..|-|.||.|+.+|+.++.+||+..+.+-
T Consensus       183 q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~  224 (527)
T KOG0505|consen  183 QWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV  224 (527)
T ss_pred             HHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc
Confidence              1124467788888999999999999999999999887665

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.90  E-value=1.2e-09  Score=90.05  Aligned_cols=42  Identities=31%  Similarity=0.438  Sum_probs=29.9

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHH
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLA  686 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlA  686 (847)
                      .|.||||+||++|+.++|++||++|+            +++++|..|+||||+|
T Consensus        15 ~G~T~LH~A~~~g~~~~v~~Ll~~g~------------d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   15 YGNTPLHWAARYGHSEVVRLLLQNGA------------DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TS--HHHHHHHHT-HHHHHHHHHCT--------------TT---TTS--HHHH-
T ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCcC------------CCCCCcCCCCCHHHhC
Confidence            59999999999999999999999998            6899999999999998

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.88  E-value=4.1e-09  Score=119.12  Aligned_cols=120  Identities=19%  Similarity=0.145  Sum_probs=90.3

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      -||.-|+-.|-.++|+.++..+-+       .+.   ..-.|.|+||-|+..||.+||+|||++|+            ++
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~D-------pSq---pNdEGITaLHNAiCaghyeIVkFLi~~ga------------nV  609 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTD-------PSQ---PNDEGITALHNAICAGHYEIVKFLIEFGA------------NV  609 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcC-------CCC---CCccchhHHhhhhhcchhHHHHHHHhcCC------------cc
Confidence            455567888999999988776422       111   11259999999999999999999999999            67


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHH--HcCCHHHHHHHHH
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYAL--MKNNHAYNKLVAR  740 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa--~~G~~eiIeLLl~  740 (847)
                      |+.|.+||||||-||..++ .-|+..|.++++     |-.-.+=.++.||.+-.-  .-|+....++|..
T Consensus       610 Na~DSdGWTPLHCAASCNn-v~~ckqLVe~Ga-----avfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  610 NAADSDGWTPLHCAASCNN-VPMCKQLVESGA-----AVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cCccCCCCchhhhhhhcCc-hHHHHHHHhccc-----eEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999855 558888998832     222233468899988543  3477777777754

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.57  E-value=6.4e-08  Score=116.18  Aligned_cols=127  Identities=22%  Similarity=0.248  Sum_probs=95.9

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      .+|.+|+-.||..||..||....+    ++..    .+. .+.|+|-+||.-|..++|++||.+|++            -
T Consensus       792 ~plImaatagh~tvV~~llk~ha~----veaQ----sdr-tkdt~lSlacsggr~~vvelLl~~gan------------k  850 (2131)
T KOG4369|consen  792 VPLIMAATAGHITVVQDLLKAHAD----VEAQ----SDR-TKDTMLSLACSGGRTRVVELLLNAGAN------------K  850 (2131)
T ss_pred             hhhhhhcccCchHHHHHHHhhhhh----hhhh----ccc-ccCceEEEecCCCcchHHHHHHHhhcc------------c
Confidence            677778888888888888876432    2211    122 467888888888888888888888884            2


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ..++-...|||-+|+. +|..+|+.+|+.++.+|+    -..-.+.|..||.+|.++||.....+|+.+++|.
T Consensus       851 ehrnvsDytPlsla~S-ggy~~iI~~llS~GseIn----SrtgSklgisPLmlatmngh~~at~~ll~~gsdi  918 (2131)
T KOG4369|consen  851 EHRNVSDYTPLSLARS-GGYTKIIHALLSSGSEIN----SRTGSKLGISPLMLATMNGHQAATLSLLQPGSDI  918 (2131)
T ss_pred             cccchhhcCchhhhcC-cchHHHHHHHhhcccccc----cccccccCcchhhhhhhccccHHHHHHhcccchh
Confidence            4567788899999987 788899999999833322    2334567899999999999999999999888775

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.50  E-value=3.3e-07  Score=103.55  Aligned_cols=85  Identities=24%  Similarity=0.248  Sum_probs=72.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccC
Q 003109          637 LLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  715 (847)
Q Consensus       637 pLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~-~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnar  715 (847)
                      -||..|+.|+.+.+=-||..||            ++|.-++ .|.||||.||..+. ..=+++|.-+      |||+++.
T Consensus       136 QLhasvRt~nlet~LRll~lGA------------~~N~~hpekg~TpLHvAAk~Gq-~~Q~ElL~vY------GAD~~a~  196 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGA------------QANFFHPEKGNTPLHVAAKAGQ-ILQAELLAVY------GADPGAQ  196 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHccc------------ccCCCCcccCCchhHHHHhccc-hhhhhHHhhc------cCCCCCC
Confidence            4999999999999999999999            4555554 59999999998644 4467888776      6889999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Q 003109          716 DASGHSPYSYALMKNNHAYNKLVAR  740 (847)
Q Consensus       716 D~~G~TPLHyAa~~G~~eiIeLLl~  740 (847)
                      |.+|.||++||...||.++.+-|..
T Consensus       197 d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  197 DSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCCCcHHHHHHhcCchHHHHHHHH
Confidence            9999999999999999999976654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.46  E-value=2.8e-07  Score=105.52  Aligned_cols=95  Identities=21%  Similarity=0.112  Sum_probs=78.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccC
Q 003109          636 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  715 (847)
Q Consensus       636 TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnar  715 (847)
                      .-|.+|+.......+-+||.||-...       . +-...+.+|+|+||+||.+ |+..+.+||+.+      ++|+-++
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e-------~-~~t~~~~~grt~LHLa~~~-gnVvl~QLLiWy------g~dv~~r  690 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREE-------V-NETCGEGDGRTALHLAARK-GNVVLAQLLIWY------GVDVMAR  690 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchh-------h-hccccCCCCcchhhhhhhh-cchhHHHHHHHh------Cccceec
Confidence            34778999999999999999997310       0 1123456789999999996 667688999988      6789999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          716 DASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       716 D~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |..|+|+|.||.+.|..+.+.+|+..+..-
T Consensus       691 da~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  691 DAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             ccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            999999999999999999999999987654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.45  E-value=7.7e-08  Score=115.50  Aligned_cols=128  Identities=14%  Similarity=0.034  Sum_probs=108.7

Q ss_pred             hhhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc
Q 003109          589 SRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY  668 (847)
Q Consensus       589 ~R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~  668 (847)
                      .++++.|-.||..||.+++.+|+..++    +++-     .+. .|.+||..|+-.||..+|+.||.+.+          
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rga----nieh-----rdk-kgf~plImaatagh~tvV~~llk~ha----------  814 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGA----NIEH-----RDK-KGFVPLIMAATAGHITVVQDLLKAHA----------  814 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhcc----cccc-----ccc-ccchhhhhhcccCchHHHHHHHhhhh----------
Confidence            467899999999999999999999743    2321     123 48999999999999999999999887          


Q ss_pred             CCCCCC-CCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          669 IFPPNL-AGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       669 l~d~na-~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                        ++++ .|..+.|+|-+||. +|..++|++|+++      +|+.-.|+-..+|||.+|+..|+.+||++|+..++..
T Consensus       815 --~veaQsdrtkdt~lSlacs-ggr~~vvelLl~~------gankehrnvsDytPlsla~Sggy~~iI~~llS~GseI  883 (2131)
T KOG4369|consen  815 --DVEAQSDRTKDTMLSLACS-GGRTRVVELLLNA------GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEI  883 (2131)
T ss_pred             --hhhhhcccccCceEEEecC-CCcchHHHHHHHh------hccccccchhhcCchhhhcCcchHHHHHHHhhccccc
Confidence              3444 58899999999998 6788899999998      5677889999999999999999999999999987655

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.41  E-value=6.3e-07  Score=96.25  Aligned_cols=93  Identities=16%  Similarity=0.101  Sum_probs=79.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  713 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vn  713 (847)
                      ...+|..|...|..+-...||+-.-            .+|..|++|+|||..||.+ |..+++++|+++      |||+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr------------~vn~~D~sGMs~LahAayk-Gnl~~v~lll~~------gaDvN   72 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVR------------QVNQRDPSGMSVLAHAAYK-GNLTLVELLLEL------GADVN   72 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhh------------hhhccCCCcccHHHHHHhc-CcHHHHHHHHHh------CCCcC
Confidence            4578888999999999999997632            4789999999999999985 677799999998      56787


Q ss_pred             cC-CCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          714 IL-DASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       714 ar-D~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      .. +..|+||||+||..|+.++..+|++.++.-
T Consensus        73 ~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~  105 (396)
T KOG1710|consen   73 DKQHGTLYTPLMFAALSGNQDVCRLLLDAGARM  105 (396)
T ss_pred             cccccccccHHHHHHHcCCchHHHHHHhccCcc
Confidence            65 668999999999999999999999987765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.23  E-value=1.1e-06  Score=100.28  Aligned_cols=94  Identities=19%  Similarity=0.244  Sum_probs=81.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  713 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vn  713 (847)
                      -.++||+|++.|+.+||++||+||+..          -.|+.|..|.|+||-||+. +...|..+|.+.      ||...
T Consensus       899 ~~sllh~a~~tg~~eivkyildh~p~e----------lld~~de~get~lhkaa~~-~~r~vc~~lvda------gasl~  961 (1004)
T KOG0782|consen  899 HCSLLHYAAKTGNGEIVKYILDHGPSE----------LLDMADETGETALHKAACQ-RNRAVCQLLVDA------GASLR  961 (1004)
T ss_pred             hhhHHHHHHhcCChHHHHHHHhcCCHH----------HHHHHhhhhhHHHHHHHHh-cchHHHHHHHhc------chhhe
Confidence            469999999999999999999999831          2378889999999999997 556699999876      56688


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          714 ILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       714 arD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      ..|..|.||-..|-+.|..++..+|.++-+-
T Consensus       962 ktd~kg~tp~eraqqa~d~dlaayle~rq~y  992 (1004)
T KOG0782|consen  962 KTDSKGKTPQERAQQAGDPDLAAYLESRQNY  992 (1004)
T ss_pred             ecccCCCChHHHHHhcCCchHHHHHhhhhch
Confidence            9999999999999999999999999876443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.22  E-value=6e-06  Score=100.24  Aligned_cols=130  Identities=15%  Similarity=0.123  Sum_probs=91.3

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      |...+||++++.++.-++.++++-.   +  ...   .+++. +|..-+|+ |..++.+.+-+|+.+.-.          
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~---~--~~~---~eld~-d~qgV~hf-ca~lg~ewA~ll~~~~~~----------  632 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWA---G--SGD---LELDR-DGQGVIHF-CAALGYEWAFLPISADGV----------  632 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhccc---c--cCc---hhhcc-cCCChhhH-hhhcCCceeEEEEeeccc----------
Confidence            5567888888888877777777730   1  110   11223 35667777 445556666666655321          


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  741 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K  741 (847)
                       .+|.+|..||||||||+.. |++.++..|..-....|+-.+.+.-+-.|.|+-++|..+||..+..+|..+
T Consensus       633 -ai~i~D~~G~tpL~wAa~~-G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  633 -AIDIRDRNGWTPLHWAAFR-GREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             -ccccccCCCCcccchHhhc-CHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence             4688999999999999984 888899988865443344456666666799999999999999999988776

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.15  E-value=4.1e-06  Score=95.83  Aligned_cols=92  Identities=25%  Similarity=0.242  Sum_probs=71.5

Q ss_pred             hHHHHHHHcCCHH-HHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcc
Q 003109          636 QLLNRAVKMKCRR-MVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI  714 (847)
Q Consensus       636 TpLH~AV~~g~~e-IVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vna  714 (847)
                      -|||+++.....+ |.+.|+.. +-          ..+|.+|..|.||||+|+..++. ..+.+|+.+      +|++..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~-~~----------~~id~~D~~g~TpLhlAV~Lg~~-~~a~~Ll~a------~Adv~~   83 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK-VS----------LVIDRRDPPGRTPLHLAVRLGHV-EAARILLSA------GADVSI   83 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh-hh----------ceeccccCCCCccHHHHHHhcCH-HHHHHHHhc------CCCccc
Confidence            4599999766554 55544444 31          14688999999999999998554 467777765      578999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          715 LDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       715 rD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|+.|+||||-|+..|+..+|..++++....
T Consensus        84 kN~~gWs~L~EAv~~g~~q~i~~vlr~~~~q  114 (560)
T KOG0522|consen   84 KNNEGWSPLHEAVSTGNEQIITEVLRHLKYQ  114 (560)
T ss_pred             cccccccHHHHHHHcCCHHHHHHHHHHhHHH
Confidence            9999999999999999999998777776555

>PF13606 Ank_3: Ankyrin repeat

Probab=98.05  E-value=4.6e-06  Score=61.40  Aligned_cols=27  Identities=15%  Similarity=-0.002  Sum_probs=25.3

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLT  659 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~  659 (847)
                      +|+||||+|++.|+.+||++||++|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            389999999999999999999999984

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.05  E-value=3.9e-06  Score=94.78  Aligned_cols=92  Identities=16%  Similarity=0.054  Sum_probs=81.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  713 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vn  713 (847)
                      +...+.+|++.|.....+-+.-.|.            |.+.+|.+.+|+||+||. .|+.++++.|++.     ++.+++
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~------------D~~~~DyD~RTaLHvAAa-EG~v~v~kfl~~~-----~kv~~~  567 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGM------------DLETKDYDDRTALHVAAA-EGHVEVVKFLLNA-----CKVDPD  567 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcc------------cccccccccchhheeecc-cCceeHHHHHHHH-----HcCCCC
Confidence            4578899999999999988888887            568899999999999998 4788899999986     245789


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 003109          714 ILDASGHSPYSYALMKNNHAYNKLVARKLA  743 (847)
Q Consensus       714 arD~~G~TPLHyAa~~G~~eiIeLLl~K~a  743 (847)
                      .+|.-|+|||+=|..-+|.+++++|.+..-
T Consensus       568 ~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  568 PKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            999999999999999999999999987644

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.04  E-value=5.6e-06  Score=61.30  Aligned_cols=27  Identities=19%  Similarity=0.074  Sum_probs=25.4

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLT  659 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~  659 (847)
                      +|+||||+|+++|+.++|++||++|++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            489999999999999999999999993

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=97.89  E-value=1.2e-05  Score=59.54  Aligned_cols=33  Identities=33%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCC
Q 003109          678 GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA  717 (847)
Q Consensus       678 ~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~  717 (847)
                      +|.||||+||.. +..+++++|+++      +|+++++|+
T Consensus         1 dG~TpLh~A~~~-~~~~~v~~Ll~~------ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQR-GHPDIVKLLLKH------GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHT-TCHHHHHHHHHT------TSCTTCBCT
T ss_pred             CcccHHHHHHHH-HHHHHHHHHHHC------cCCCCCCCC
Confidence            467777777764 566677777776      456676663

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.87  E-value=3.9e-05  Score=91.90  Aligned_cols=125  Identities=18%  Similarity=0.086  Sum_probs=91.9

Q ss_pred             HHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCC
Q 003109          596 VFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLA  675 (847)
Q Consensus       596 ~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~  675 (847)
                      ..|+++|....|++.|.........     ....+.+ |+++||.|+.+.|.+++++|+++..              .. 
T Consensus        30 L~a~E~gd~~~V~k~l~~~~~~~ln-----inc~d~l-Gr~al~iai~nenle~~eLLl~~~~--------------~~-   88 (822)
T KOG3609|consen   30 LLAHENGDVPLVAKALEYKAVSKLN-----INCRDPL-GRLALHIAIDNENLELQELLLDTSS--------------EE-   88 (822)
T ss_pred             HHHHHcCChHHHHHHHHhccccccc-----hhccChH-hhhceecccccccHHHHHHHhcCcc--------------cc-
Confidence            3589999999999999863221122     2233454 8999999999999999999999964              22 


Q ss_pred             CCCCChHHHHHHhcCCcHHHHHHHhCCCCCCC-C---CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcccc
Q 003109          676 GPGGITPLHLAACTSDSDDIIDALTNDPQEIG-P---SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRR  746 (847)
Q Consensus       676 d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vG-a---gA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~~  746 (847)
                          .-+|-+|+.. +...+|++|++|+...+ .   +......=.-+-||+.+||.+||+||+++|++|+++..
T Consensus        89 ----gdALL~aI~~-~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   89 ----GDALLLAIAV-GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ----chHHHHHHHH-HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                2377788875 67789999999864311 0   11111223346799999999999999999999988764

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.86  E-value=1.3e-05  Score=97.17  Aligned_cols=87  Identities=25%  Similarity=0.259  Sum_probs=75.7

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.|+||.||.++..-++++||.+|+            ++|..|..|.||||.+... |+...+.+|+..      +|+.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga------------~vn~~d~~g~~plh~~~~~-g~~~~~~~ll~~------~a~~  715 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGA------------DVNALDSKGRTPLHHATAS-GHTSIACLLLKR------GADP  715 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCC------------cchhhhccCCCcchhhhhh-cccchhhhhccc------cccc
Confidence            47899999999999999999999998            5799999999999999984 667788888886      5789


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHH
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLV  738 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLL  738 (847)
                      ++.|.+|.+||++|....+.+++-|+
T Consensus       716 ~a~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  716 NAFDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cccCccCcchhhHHhhhccccHHHHH
Confidence            99999999999999888666655333

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.84  E-value=3.6e-05  Score=87.57  Aligned_cols=90  Identities=21%  Similarity=0.212  Sum_probs=73.0

Q ss_pred             hhhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc
Q 003109          589 SRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY  668 (847)
Q Consensus       589 ~R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~  668 (847)
                      +-+..-||-+++.|+.++.-.||..+++.++--    +   +  .|.||||.|++.|+..-+|+|+-|||          
T Consensus       131 ~~LsrQLhasvRt~nlet~LRll~lGA~~N~~h----p---e--kg~TpLHvAAk~Gq~~Q~ElL~vYGA----------  191 (669)
T KOG0818|consen  131 KDLSKQLHSSVRTGNLETCLRLLSLGAQANFFH----P---E--KGNTPLHVAAKAGQILQAELLAVYGA----------  191 (669)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHcccccCCCC----c---c--cCCchhHHHHhccchhhhhHHhhccC----------
Confidence            345678999999999999999999866544321    1   1  38899999999999999999999999          


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHh
Q 003109          669 IFPPNLAGPGGITPLHLAACTSDSDDIIDALT  700 (847)
Q Consensus       669 l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL  700 (847)
                        ||++.|.+|+||+-||-. +|+.++.+-|.
T Consensus       192 --D~~a~d~~GmtP~~~AR~-~gH~~laeRl~  220 (669)
T KOG0818|consen  192 --DPGAQDSSGMTPVDYARQ-GGHHELAERLV  220 (669)
T ss_pred             --CCCCCCCCCCcHHHHHHh-cCchHHHHHHH
Confidence              789999999999999976 56655665554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.84  E-value=1.2e-05  Score=95.56  Aligned_cols=77  Identities=21%  Similarity=0.201  Sum_probs=68.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSW  711 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d-~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~  711 (847)
                      .|+|+||.|+..|..++++.||.||+            +++.+| ..|+||||-|... |+-+.+-+|+.+      |+.
T Consensus        51 ~GR~alH~~~S~~k~~~l~wLlqhGi------------dv~vqD~ESG~taLHRaiyy-G~idca~lLL~~------g~S  111 (1267)
T KOG0783|consen   51 YGRTALHIAVSENKNSFLRWLLQHGI------------DVFVQDEESGYTALHRAIYY-GNIDCASLLLSK------GRS  111 (1267)
T ss_pred             hccceeeeeeccchhHHHHHHHhcCc------------eeeeccccccchHhhHhhhh-chHHHHHHHHhc------CCc
Confidence            49999999999999999999999998            567777 4799999999985 778899999998      356


Q ss_pred             CccCCCCCCCHHHHHHH
Q 003109          712 NSILDASGHSPYSYALM  728 (847)
Q Consensus       712 vnarD~~G~TPLHyAa~  728 (847)
                      ..++|+.|.+||++-++
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            88999999999998776

>PF13606 Ank_3: Ankyrin repeat

Probab=97.78  E-value=2.2e-05  Score=57.79  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          718 SGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       718 ~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      +|+||||+|+..|+.+++++|++++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            588999999999999999999888765

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.77  E-value=4e-05  Score=87.94  Aligned_cols=89  Identities=19%  Similarity=0.156  Sum_probs=66.4

Q ss_pred             HHHHHHHhcC-chhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          593 FLLVFSVDRG-CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       593 ~LL~FAvdrG-w~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      .+||+++-.. |-...+.|+.. ....++.  .     +. .|.||||.||+-|+..-++.||.+||            +
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~-~~~~id~--~-----D~-~g~TpLhlAV~Lg~~~~a~~Ll~a~A------------d   80 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK-VSLVIDR--R-----DP-PGRTPLHLAVRLGHVEAARILLSAGA------------D   80 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh-hhceecc--c-----cC-CCCccHHHHHHhcCHHHHHHHHhcCC------------C
Confidence            5688877654 66677776665 3333332  2     23 57999999999999999999999998            4


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTND  702 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~  702 (847)
                      +-.++..||||||.|++.++...|.++|...
T Consensus        81 v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   81 VSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             ccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            5678999999999999986655555555443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.55  E-value=0.00014  Score=84.10  Aligned_cols=89  Identities=19%  Similarity=0.095  Sum_probs=66.6

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCC
Q 003109          595 LVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNL  674 (847)
Q Consensus       595 L~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na  674 (847)
                      |.-|+.......+-+||..+...-+  ++    .....+|+|+||+|++.|++.+..+||-||+            |+-+
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~--~~----t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~------------dv~~  689 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEV--NE----TCGEGDGRTALHLAARKGNVVLAQLLIWYGV------------DVMA  689 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhh--hc----cccCCCCcchhhhhhhhcchhHHHHHHHhCc------------ccee
Confidence            3345555556666666665432111  11    1122357999999999999999999999998            5678


Q ss_pred             CCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 003109          675 AGPGGITPLHLAACTSDSDDIIDALTND  702 (847)
Q Consensus       675 ~d~~G~TPLHlAA~~~g~e~VveLLL~~  702 (847)
                      +|..|+|+|.||-. .+..+++++|+.+
T Consensus       690 rda~g~t~l~yar~-a~sqec~d~llq~  716 (749)
T KOG0705|consen  690 RDAHGRTALFYARQ-AGSQECIDVLLQY  716 (749)
T ss_pred             cccCCchhhhhHhh-cccHHHHHHHHHc
Confidence            99999999999976 5788899999988

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.45  E-value=7.4e-05  Score=91.12  Aligned_cols=94  Identities=14%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHY-SLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSW  711 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~-GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~  711 (847)
                      .|+++||.|+..++..+++.|+++ |-            ..+.-|.+|.--+|+.|. .|.+ .+-+|+..-     +-.
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~------------~~~eld~d~qgV~hfca~-lg~e-wA~ll~~~~-----~~a  633 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGS------------GDLELDRDGQGVIHFCAA-LGYE-WAFLPISAD-----GVA  633 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhccccc------------CchhhcccCCChhhHhhh-cCCc-eeEEEEeec-----ccc
Confidence            589999999999999999999998 43            123445556666777664 3444 444444321     234


Q ss_pred             CccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          712 NSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       712 vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++.+|..|+||||+|+++|+..++..|...+++.
T Consensus       634 i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  634 IDIRDRNGWTPLHWAAFRGREKLVASLIELGADP  667 (975)
T ss_pred             cccccCCCCcccchHhhcCHHHHHHHHHHhcccc
Confidence            8999999999999999999999999998777665

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.44  E-value=4.9e-05  Score=90.51  Aligned_cols=66  Identities=21%  Similarity=0.207  Sum_probs=59.1

Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCC-CCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA-SGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~-~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      .|.+|.-|+|+||+|+.. +...+++.|++|      |++++.+|. .|+||||-|...||.+.+-+|++|+..
T Consensus        45 anikD~~GR~alH~~~S~-~k~~~l~wLlqh------Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSE-NKNSFLRWLLQH------GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             hhHHHhhccceeeeeecc-chhHHHHHHHhc------CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            478999999999999986 566799999999      568999987 799999999999999999999998754

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.06  E-value=0.00095  Score=68.94  Aligned_cols=67  Identities=19%  Similarity=0.146  Sum_probs=59.4

Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA  743 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a  743 (847)
                      ++|++|..|||||+-||+. |..+++.+|+.+    |+ ||+-++|..|.+++.+|-..|+.+++++|.+...
T Consensus         4 ~in~rD~fgWTalmcaa~e-g~~eavsyllgr----g~-a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAME-GSNEAVSYLLGR----GV-AFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CccchhhhcchHHHHHhhh-cchhHHHHHhcc----Cc-ccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            6799999999999999985 666799999887    32 7999999999999999999999999999987643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=96.76  E-value=0.0019  Score=74.81  Aligned_cols=91  Identities=23%  Similarity=0.211  Sum_probs=71.3

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ++.+||+|+..|.-++||+||+.....-.|+       ++ ..|.|.||.|+..++..++.+|++.||.           
T Consensus       899 ~~sllh~a~~tg~~eivkyildh~p~elld~-------~d-e~get~lhkaa~~~~r~vc~~lvdagas-----------  959 (1004)
T KOG0782|consen  899 HCSLLHYAAKTGNGEIVKYILDHGPSELLDM-------AD-ETGETALHKAACQRNRAVCQLLVDAGAS-----------  959 (1004)
T ss_pred             hhhHHHHHHhcCChHHHHHHHhcCCHHHHHH-------Hh-hhhhHHHHHHHHhcchHHHHHHHhcchh-----------
Confidence            5799999999999999999999743222221       22 2588999999999999999999999983           


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTND  702 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~  702 (847)
                       .--+|..|.||-.-|-.. +..+++..|.+.
T Consensus       960 -l~ktd~kg~tp~eraqqa-~d~dlaayle~r  989 (1004)
T KOG0782|consen  960 -LRKTDSKGKTPQERAQQA-GDPDLAAYLESR  989 (1004)
T ss_pred             -heecccCCCChHHHHHhc-CCchHHHHHhhh
Confidence             235688899999998765 455677777653

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=96.74  E-value=0.0015  Score=79.71  Aligned_cols=90  Identities=24%  Similarity=0.236  Sum_probs=73.5

Q ss_pred             chhhhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 003109          587 SLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQ  666 (847)
Q Consensus       587 si~R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~  666 (847)
                      +....+++||.|+..||...+.+||+.+.    +++.     .+. .|+||||.+...|+...+.+|++.||        
T Consensus       652 ~~~~~~s~lh~a~~~~~~~~~e~ll~~ga----~vn~-----~d~-~g~~plh~~~~~g~~~~~~~ll~~~a--------  713 (785)
T KOG0521|consen  652 VLCIGCSLLHVAVGTGDSGAVELLLQNGA----DVNA-----LDS-KGRTPLHHATASGHTSIACLLLKRGA--------  713 (785)
T ss_pred             hhhcccchhhhhhccchHHHHHHHHhcCC----cchh-----hhc-cCCCcchhhhhhcccchhhhhccccc--------
Confidence            34456799999999999999999999753    3332     234 48999999999999999999999998        


Q ss_pred             CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHH
Q 003109          667 KYIFPPNLAGPGGITPLHLAACTSDSDDIIDAL  699 (847)
Q Consensus       667 ~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLL  699 (847)
                          ++++.++.|.+||++|... .+.+++-+|
T Consensus       714 ----~~~a~~~~~~~~l~~a~~~-~~~d~~~l~  741 (785)
T KOG0521|consen  714 ----DPNAFDPDGKLPLDIAMEA-ANADIVLLL  741 (785)
T ss_pred             ----cccccCccCcchhhHHhhh-ccccHHHHH
Confidence                6899999999999999876 444455443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=96.70  E-value=0.0015  Score=74.65  Aligned_cols=88  Identities=14%  Similarity=0.171  Sum_probs=68.6

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      ..++||+..|....++.++-.+    .|++..     +. +.+|+||.|+..|+.++|++||+.--           .+|
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g----~D~~~~-----Dy-D~RTaLHvAAaEG~v~v~kfl~~~~k-----------v~~  566 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQG----MDLETK-----DY-DDRTALHVAAAEGHVEVVKFLLNACK-----------VDP  566 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhc----cccccc-----cc-ccchhheeecccCceeHHHHHHHHHc-----------CCC
Confidence            4578999999888777765543    344322     23 57899999999999999999997521           278


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTND  702 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~  702 (847)
                      |.+|.-|+|||--|-.. ++.+|+.+|-+.
T Consensus       567 ~~kDRw~rtPlDdA~~F-~h~~v~k~L~~~  595 (622)
T KOG0506|consen  567 DPKDRWGRTPLDDAKHF-KHKEVVKLLEEA  595 (622)
T ss_pred             ChhhccCCCcchHhHhc-CcHHHHHHHHHH
Confidence            99999999999999887 567799988754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.26  E-value=0.0074  Score=67.67  Aligned_cols=76  Identities=20%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccC
Q 003109          636 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  715 (847)
Q Consensus       636 TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnar  715 (847)
                      -=|..|++.|..+.|+.|++.|.            ++|++|.-...||.+|+.. |++++|++|+++    |+   +-.+
T Consensus        38 ~elceacR~GD~d~v~~LVetgv------------nVN~vD~fD~spL~lAsLc-GHe~vvklLLen----GA---iC~r   97 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGV------------NVNAVDRFDSSPLYLASLC-GHEDVVKLLLEN----GA---ICSR   97 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCC------------CcchhhcccccHHHHHHHc-CcHHHHHHHHHc----CC---cccc
Confidence            34889999999999999999998            5799999999999999985 899999999998    44   3334


Q ss_pred             CC-CCCCHHHHHHHcCCH
Q 003109          716 DA-SGHSPYSYALMKNNH  732 (847)
Q Consensus       716 D~-~G~TPLHyAa~~G~~  732 (847)
                      |. +|.- =||++.+.++
T Consensus        98 dtf~G~R-C~YgaLnd~I  114 (516)
T KOG0511|consen   98 DTFDGDR-CHYGALNDRI  114 (516)
T ss_pred             cccCcch-hhhhhhhHHH
Confidence            44 4543 3677765543

>smart00248 ANK ankyrin repeats

Probab=95.20  E-value=0.028  Score=36.73  Aligned_cols=26  Identities=19%  Similarity=0.106  Sum_probs=24.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCC
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLT  659 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~  659 (847)
                      |.|+||+|+..++.+++++|+++|.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            67999999999999999999999873

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.14  E-value=0.033  Score=64.39  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHH
Q 003109          646 CRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSY  725 (847)
Q Consensus       646 ~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHy  725 (847)
                      -...+++|.++++.      .++.+.|.+.+.---|+|||||..+.. ..|..||..      +||..++|..|+||+.+
T Consensus       403 ~p~~ie~lken~ls------gnf~~~pe~~~~ltsT~LH~aa~qg~~-k~v~~~Lee------g~Dp~~kd~~Grtpy~l  469 (591)
T KOG2505|consen  403 EPDSIEALKENLLS------GNFDVTPEANDYLTSTFLHYAAAQGAR-KCVKYFLEE------GCDPSTKDGAGRTPYSL  469 (591)
T ss_pred             chhHHHHHHhcCCc------ccccccccccccccchHHHHHHhcchH-HHHHHHHHh------cCCchhcccCCCCcccc
Confidence            36778999999873      345667778888889999999986554 466666665      47899999999999999


Q ss_pred             HHHcCCHHHHHHHHH
Q 003109          726 ALMKNNHAYNKLVAR  740 (847)
Q Consensus       726 Aa~~G~~eiIeLLl~  740 (847)
                      ++   +.++=...+.
T Consensus       470 s~---nkdVk~~F~a  481 (591)
T KOG2505|consen  470 SA---NKDVKSIFIA  481 (591)
T ss_pred             cc---cHHHHHHHHH
Confidence            87   5555555553

>smart00248 ANK ankyrin repeats

Probab=94.78  E-value=0.039  Score=35.97  Aligned_cols=26  Identities=31%  Similarity=0.313  Sum_probs=19.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhc
Q 003109          718 SGHSPYSYALMKNNHAYNKLVARKLA  743 (847)
Q Consensus       718 ~G~TPLHyAa~~G~~eiIeLLl~K~a  743 (847)
                      +|.||+|+|+..|+.+++++|++++.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            36778888888888888877776654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.56  E-value=0.027  Score=65.18  Aligned_cols=68  Identities=22%  Similarity=0.320  Sum_probs=53.8

Q ss_pred             hhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHH
Q 003109          604 CALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPL  683 (847)
Q Consensus       604 ~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPL  683 (847)
                      ...+..|...+..+++++...   ..+.+ --|+||+|+.+|..++|..||+.|+            ||-++|..|+||.
T Consensus       404 p~~ie~lken~lsgnf~~~pe---~~~~l-tsT~LH~aa~qg~~k~v~~~Leeg~------------Dp~~kd~~Grtpy  467 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPE---ANDYL-TSTFLHYAAAQGARKCVKYFLEEGC------------DPSTKDGAGRTPY  467 (591)
T ss_pred             hhHHHHHHhcCCccccccccc---ccccc-cchHHHHHHhcchHHHHHHHHHhcC------------CchhcccCCCCcc
Confidence            556666777666666655422   33333 5699999999999999999999997            7889999999999


Q ss_pred             HHHH
Q 003109          684 HLAA  687 (847)
Q Consensus       684 HlAA  687 (847)
                      .+++
T Consensus       468 ~ls~  471 (591)
T KOG2505|consen  468 SLSA  471 (591)
T ss_pred             cccc
Confidence            9997

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.55  E-value=0.1  Score=58.87  Aligned_cols=57  Identities=14%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLT  659 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~  659 (847)
                      .-|+.||++|..+.|+.|++.    |++++..     +.. ...||.+|+--||.++|++||++||-
T Consensus        38 ~elceacR~GD~d~v~~LVet----gvnVN~v-----D~f-D~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET----GVNVNAV-----DRF-DSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh----CCCcchh-----hcc-cccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            446789999999999999995    3555432     454 67999999999999999999999993

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.32  E-value=0.06  Score=65.57  Aligned_cols=97  Identities=13%  Similarity=0.061  Sum_probs=75.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCC
Q 003109          637 LLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD  716 (847)
Q Consensus       637 pLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD  716 (847)
                      -...|+.+|+...|+..|++...        ..+++|..|+-|+++||+|..+ .+-+++++|++++-        ..  
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~--------~~lninc~d~lGr~al~iai~n-enle~~eLLl~~~~--------~~--   88 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAV--------SKLNINCRDPLGRLALHIAIDN-ENLELQELLLDTSS--------EE--   88 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccc--------cccchhccChHhhhceeccccc-ccHHHHHHHhcCcc--------cc--
Confidence            35579999999999999988541        2347899999999999999984 56679999999831        12  


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhhccccCCccccccC
Q 003109          717 ASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVG  755 (847)
Q Consensus       717 ~~G~TPLHyAa~~G~~eiIeLLl~K~a~~~~~~v~~~i~  755 (847)
                         .-+|-+|...|....+|+++.+-+.-.+-+.+.+.+
T Consensus        89 ---gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~  124 (822)
T KOG3609|consen   89 ---GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDAN  124 (822)
T ss_pred             ---chHHHHHHHHHHHHHHHHHHhcccccchhccccccC
Confidence               367899999999999999998877664444444444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=92.54  E-value=0.22  Score=52.00  Aligned_cols=58  Identities=12%  Similarity=0.145  Sum_probs=51.6

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTND  702 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~  702 (847)
                      -|+|+|+.|+..|+.+.|.+|+.+|+-           .|.+.|..|++++.+|=. +|..+++.+|-+.
T Consensus        11 fgWTalmcaa~eg~~eavsyllgrg~a-----------~vgv~d~ssldaaqlaek-~g~~~fvh~lfe~   68 (223)
T KOG2384|consen   11 FGWTALMCAAMEGSNEAVSYLLGRGVA-----------FVGVTDESSLDAAQLAEK-GGAQAFVHSLFEN   68 (223)
T ss_pred             hcchHHHHHhhhcchhHHHHHhccCcc-----------cccccccccchHHHHHHh-cChHHHHHHHHHH
Confidence            499999999999999999999999951           578999999999999965 7888899988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	847
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 6e-10
 Identities = 75/541 (13%), Positives = 148/541 (27%), Gaps = 184/541 (34%)

Query: 307 SDAQDCTGRIIF-------KLFD-KDPSQFP-GTLRKEIYNWLSNSPSEMESYIRPGCVI 357
            + Q     I+          FD KD    P   L KE  + +  S   +   +R    +
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR----L 67

Query: 358 LSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCK 417
               +S      ++    +L+               N +FL+   K          R+  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRI--------------NYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 418 SWR--TWSSPELISVSPLAVVGGQELSFKLRGRNLTNL----GTKIHCTFMGGYASQEVT 471
             R   ++  ++ +     V   Q    KLR + L  L       I    + G     V 
Sbjct: 114 EQRDRLYNDNQVFA--KYNVSRLQPYL-KLR-QALLELRPAKNVLIDG--VLGSGKTWVA 167

Query: 472 SSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLE 531
              C             K+Q         F++ ++N     +  V+     +      ++
Sbjct: 168 LDVCL----SY------KVQCKMDF--KIFWLNLKNCNSPET--VLEMLQKLL---YQID 210

Query: 532 SEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRF 591
             + + +           H          +   L  L  L  +   +             
Sbjct: 211 PNWTSRSD----------HSSNIKLRIHSIQAELRRL--LKSKPYENC------------ 246

Query: 592 KFLLV------------FSVDRGCCALV----KAILDIL---VEGNLSMD----GLS-RE 627
             LLV            F  +  C  L+    K + D L      ++S+D     L+  E
Sbjct: 247 --LLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 628 SLEML--W----------EIQLLN-RAVKM---KCRRMVDLLIHY--------------S 657
              +L  +          E+   N R + +     R  +    ++              S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 658 LT--SSNDTPQKY----IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSW 711
           L      +  + +    +FPP+      I  + L+    D         +D   +     
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDVI------KSDVMVV----- 407

Query: 712 NSILDASGHSPYSYALMKNNHAYNKLVARKLADRRN--GQVTIP-VGVEIEQSGLAKEQV 768
                                  NKL    L +++     ++IP + +E++     +  +
Sbjct: 408 ----------------------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 769 H 769
           H
Sbjct: 446 H 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 2e-08
 Identities = 54/384 (14%), Positives = 105/384 (27%), Gaps = 117/384 (30%)

Query: 524 CKE-LSLLESEFGAEAKVCDVISEHQAHEYGRP-RSREEVLHFLNE---------LGWLF 572
            K+ LS+ E  F       DV       +  +   S+EE+ H +           L W  
Sbjct: 18  YKDILSVFEDAFVDNFDCKDV------QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 573 QRKRASSI---VKGS---DYS--LSRFKFLLVFSVDRGCCALVKAI---LDILVEGNLSM 621
             K+   +   V+     +Y   +S  K     +  R    + +      D L   N   
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIK-----TEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 622 DGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIH-------YSLTSS--NDTPQKYIFPP 672
              +   L+   ++    R   ++ R   ++LI          +          +     
Sbjct: 127 AKYNVSRLQPYLKL----RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD- 181

Query: 673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN-- 730
                  I  L+L  C S  + +++ L     +I P+ W S  D S +       ++   
Sbjct: 182 -----FKIFWLNLKNCNSP-ETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAEL 234

Query: 731 -----NHAYNK-----------------------LVA---RKLADRRNGQVTIPVGVEIE 759
                +  Y                         L+    +++ D  +   T  + ++  
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 760 QSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCV 819
              L  ++V  L  ++                 N            P   S+  IA    
Sbjct: 295 SMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTN------------PRRLSI--IAE--- 335

Query: 820 CVCLFLRGSPDIGLVAPFKWENLD 843
                +R            W+N  
Sbjct: 336 ----SIRDGLA-------TWDNWK 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	847
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.88
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.86
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.85
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.85
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.84
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.83
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.83
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.83
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.83
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.82
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.82
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.82
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.82
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.82
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.82
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.81
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.81
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.81
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.81
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.81
2etb_A	256	Transient receptor potential cation channel subfam	99.81
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.81
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.81
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.81
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.81
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.81
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.8
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.8
2etb_A	256	Transient receptor potential cation channel subfam	99.8
2pnn_A	273	Transient receptor potential cation channel subfa	99.8
2rfa_A	232	Transient receptor potential cation channel subfa	99.8
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.8
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.8
2rfa_A	232	Transient receptor potential cation channel subfa	99.8
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.8
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.8
2pnn_A	273	Transient receptor potential cation channel subfa	99.79
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.79
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.79
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.79
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.79
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.79
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.79
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.79
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.79
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.79
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.79
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.79
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.79
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.78
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.78
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.78
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.78
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.78
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.78
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.77
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.77
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.77
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.77
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.77
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.76
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.76
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.76
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.76
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.76
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.76
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.76
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.76
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.76
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.75
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.75
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.75
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.75
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.74
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.74
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.74
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.74
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.73
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.73
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.73
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.73
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.72
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.72
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.71
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.71
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.71
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.71
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.71
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.71
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.7
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.7
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.67
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.67
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.66
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.64
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.63
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.61
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.61
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.59
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.56
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.56
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.54
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.5
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.46
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.43
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.43
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.38

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.88  E-value=1.8e-22  Score=196.03  Aligned_cols=129  Identities=20%  Similarity=0.209  Sum_probs=110.1

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+..++..+++.|++..    .+++..     +. .|+||||+|+++|+.++|++||++|+           
T Consensus        36 ~g~t~l~~a~~~~~~~~~~~ll~~g----ad~~~~-----d~-~g~TpLh~A~~~g~~~~v~~Ll~~ga-----------   94 (169)
T 4gpm_A           36 DGRTPLHHAAENGHKEVVKLLISKG----ADVNAK-----DS-DGRTPLHHAAENGHKEVVKLLISKGA-----------   94 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcc----cchhhh-----cc-CCCCHHHHHHHcCCHHHHHHHHHCcC-----------
Confidence            3468999999999999999999853    444433     22 58999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccccC
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRN  747 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~~~  747 (847)
                       ++|.+|..|+||||+||.. |..+++++|+++      +|+++.+|.+|+||||+|+++|+.+++++|++++++..-
T Consensus        95 -dvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~------gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A           95 -DVNAKDSDGRTPLHHAAEN-GHKEVVKLLISK------GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             -CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             -CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence             6799999999999999985 778899999987      578999999999999999999999999999999998753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.86  E-value=2.9e-21  Score=187.49  Aligned_cols=126  Identities=22%  Similarity=0.241  Sum_probs=111.8

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      +...|+.|+.+|+.++|+.||+.    +++++..     +. .|+||||+|+..++.+++++||++|+            
T Consensus         4 lg~~L~~Aa~~G~~~~v~~Ll~~----Gadvn~~-----d~-~g~t~l~~a~~~~~~~~~~~ll~~ga------------   61 (169)
T 4gpm_A            4 LGKRLIEAAENGNKDRVKDLIEN----GADVNAS-----DS-DGRTPLHHAAENGHKEVVKLLISKGA------------   61 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT----TCCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHC----CCCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHhccc------------
Confidence            44678899999999999999985    3555533     22 59999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +++.+|..|+||||+||.. +..+++++|+++      ||++|.+|.+|+||||+|+++|+.+++++|++++++.
T Consensus        62 d~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~  129 (169)
T 4gpm_A           62 DVNAKDSDGRTPLHHAAEN-GHKEVVKLLISK------GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV  129 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             chhhhccCCCCHHHHHHHc-CCHHHHHHHHHC------cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            6789999999999999985 778899999988      5789999999999999999999999999999998764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.85  E-value=5.5e-21  Score=175.15  Aligned_cols=124  Identities=17%  Similarity=0.199  Sum_probs=109.0

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ...++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|+..|+.++|++|+++|+           
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~-----------   71 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANG----ADVNAK-----DE-YGLTPLYLATAHGHLEIVEVLLKNGA-----------   71 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC-----------
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence            4579999999999999999999963    444433     22 58999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                       ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|.+|.||||+|+.+|+.+++++|++++
T Consensus        72 -~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           72 -DVNAVDAIGFTPLHLAAFI-GHLEIAEVLLKH------GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             -CTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             -CCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence             5788999999999999986 677899999987      5689999999999999999999999999998864

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.85  E-value=1.5e-21  Score=178.81  Aligned_cols=125  Identities=19%  Similarity=0.205  Sum_probs=110.5

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ...++||+|+.+|+.++++.|++..    .+++..     +. .|+||||+|+. |+.++|++|+++|+           
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~-----------   68 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAG----ADPNAL-----NR-FGRRPIQVMMM-GSAQVAELLLLHGA-----------   68 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TCCTTTTTSTT-SCHHHHHHHHHHTC-----------
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcC----CCcCCc-----CC-CCCCHHHHHHc-CCHHHHHHHHHCCC-----------
Confidence            3468999999999999999999863    444433     22 58999999999 99999999999998           


Q ss_pred             CCCCCCCCC-CChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          670 FPPNLAGPG-GITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       670 ~d~na~d~~-G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                       ++|.++.. |.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++++
T Consensus        69 -~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           69 -EPNCADPATLTRPVHDAARE-GFLDTLVVLHRA------GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             -CSSCCBTTTTBCHHHHHHHH-TCHHHHHHHHHT------CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             -CCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             57899999 99999999985 677899999987      578999999999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.5e-20  Score=165.97  Aligned_cols=124  Identities=22%  Similarity=0.215  Sum_probs=109.5

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      +++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|+..|+.+++++|+++|+            +
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~~----~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~   60 (126)
T 1n0r_A            3 RTPLHLAARNGHLEVVKLLLEAG----ADVNAK-----DK-NGRTPLHLAARNGHLEVVKLLLEAGA------------D   60 (126)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHT----CCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             ccHHHHHHHcCcHHHHHHHHHcC----CCCCCc-----CC-CCCcHHHHHHHcCcHHHHHHHHHcCC------------C
Confidence            47999999999999999999963    333322     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      ++.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+..|+.+++++|++++++
T Consensus        61 ~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           61 VNAKDKNGRTPLHLAARN-GHLEVVKLLLEA------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CcccCCCCCcHHHHHHHc-ChHHHHHHHHHc------CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            788999999999999985 678899999987      567999999999999999999999999999999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.83  E-value=3.6e-20  Score=172.16  Aligned_cols=125  Identities=16%  Similarity=0.144  Sum_probs=103.7

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      +.++|+.|+..|+.++++.|++...    +...      +. .|.||||+|+..|+.++|++|+++|+            
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~----~~~~------~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   58 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGA----PFTT------DW-LGTSPLHLAAQYGHFSTTEVLLRAGV------------   58 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC----CCCC------CT-TCCCHHHHHHHHTCHHHHHHHHTTTC------------
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCC----CCCc------CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            3578999999999999999998642    2220      12 48899999999999999999999987            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus        59 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  126 (153)
T 1awc_B           59 SRDARTKVDRTPLHMAASE-GHANIVEVLLKH------GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV  126 (153)
T ss_dssp             CTTCCCTTCCCHHHHHHHH-TCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCCCCHHHHHHHc-ChHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            5688888999999999985 667799999887      5678999999999999999999999999999887653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.83  E-value=2.7e-20  Score=173.00  Aligned_cols=124  Identities=15%  Similarity=0.125  Sum_probs=105.0

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+. |+.++++.|++..    .+++..     +. .|.||||+|++.|+.++|++|+++|+            
T Consensus        38 g~t~L~~A~~-~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   94 (162)
T 1ihb_A           38 GRTALQVMKL-GNPEIARRLLLRG----ANPDLK-----DR-TGFAVIHDAARAGFLDTLQTLLEFQA------------   94 (162)
T ss_dssp             SCCHHHHCCS-SCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred             CccHHHHHHc-CcHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            4689999999 9999999999863    344322     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSW-NSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~-vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      ++|.+|..|.||||+|+.. +..+++++|+++      +++ ++.+|..|.||||+|+.+|+.+++++|++++++
T Consensus        95 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           95 DVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKH------TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHH------SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            5788999999999999985 678899999987      344 689999999999999999999999999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.83  E-value=2.7e-20  Score=175.39  Aligned_cols=127  Identities=18%  Similarity=0.119  Sum_probs=111.9

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|++.|+.++|++|+++|+           
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~-----------   93 (172)
T 3v30_A           35 RGFTPLIWASAFGEIETVRFLLEWG----ADPHIL-----AK-ERESALSLASTGGYTDIVGLLLERDV-----------   93 (172)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHT----CCTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHTTTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC----CCchhh-----cc-cCCCHHHHHHHCCCHHHHHHHHHcCC-----------
Confidence            3458999999999999999999874    333322     22 58999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                       ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus        94 -~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           94 -DINIYDWNGGTPLLYAVRG-NHVKCVEALLAR------GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             -CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence             5789999999999999985 678899999987      5789999999999999999999999999999998876

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.83  E-value=9.5e-20  Score=172.38  Aligned_cols=123  Identities=18%  Similarity=0.206  Sum_probs=96.0

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|+..|+.++|++|+++|+            
T Consensus        47 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------  104 (169)
T 2y1l_E           47 GWTPLHLAAFNGHLEIVEVLLKNG----ADVNAV-----DH-AGMTPLRLAALFGHLEIVEVLLKNGA------------  104 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC----CCCCcc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            357888888888888888888852    333322     22 47888888888888888888888887            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                      ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++
T Consensus       105 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          105 DVNANDMEGHTPLHLAAMF-GHLEIVEVLLKN------GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            5677888888888888874 667788888887      4678888888888888888888888888887653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.82  E-value=9.6e-20  Score=170.89  Aligned_cols=126  Identities=17%  Similarity=0.115  Sum_probs=110.0

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++||+|+..|+.++++.|++..    .+.+..     +. .|.||||+|+..|+.++|++|+++|+            
T Consensus        36 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   93 (167)
T 3v31_A           36 GFTPLMWAAAHGQIAVVEFLLQNG----ADPQLL-----GK-GRESALSLACSKGYTDIVKMLLDCGV------------   93 (167)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TCCCHHHHHHHHTCHHHHHHHHHHTC------------
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcC----CCCCCc-----CC-CCCcHHHHHHHcCCHHHHHHHHHCCC------------
Confidence            458999999999999999999863    333322     22 58899999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|.+|+||||+|+.+|+.+++++|++++.+.
T Consensus        94 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           94 DVNEYDWNGGTPLLYAVHG-NHVKCVKMLLES------GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            5788999999999999985 678899999987      5689999999999999999999999999999988765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.82  E-value=6e-20  Score=176.40  Aligned_cols=126  Identities=15%  Similarity=0.065  Sum_probs=107.1

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++...    +++..     +. .|+||||+|++.|+.++|++|+++|+            
T Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~~~----~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   92 (192)
T 2rfm_A           35 NRTPLMVACMLGMENAIDKLVENFD----KLEDK-----DI-EGSTALIWAVKNNRLGIAEKLLSKGS------------   92 (192)
T ss_dssp             CCCHHHHHHHHTCGGGHHHHHHHHC----CTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHHTC------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcc----ccccc-----cc-cCccHHHHHHHcCCHHHHHHHHHCCC------------
Confidence            3589999999999999999999743    33322     22 48999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +++.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+..|+.+++++|++++++.
T Consensus        93 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  160 (192)
T 2rfm_A           93 NVNTKDFSGKTPLMWSIIF-GYSEMSYFLLEH------GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI  160 (192)
T ss_dssp             CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            5788899999999999985 667799999987      5678999999999999999999999999999887663

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.82  E-value=2.5e-20  Score=186.43  Aligned_cols=134  Identities=17%  Similarity=0.162  Sum_probs=110.5

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHH--------HHhhccCchHHHHHHHcCCHHHHHHHHH---cCC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRE--------SLEMLWEIQLLNRAVKMKCRRMVDLLIH---YSL  658 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~--------~~~~l~g~TpLH~AV~~g~~eIVeLLL~---~GA  658 (847)
                      ..+++||+|+.+|+.+++++||+..    .+++.....        ......|+||||+|++.|+.+||++||+   +|+
T Consensus        92 ~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  167 (260)
T 3jxi_A           92 RGQTALHIAIERRCKHYVELLVEKG----ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA  167 (260)
T ss_dssp             ESBCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCC----CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence            4569999999999999999999963    344322100        0000248999999999999999999999   787


Q ss_pred             CCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCc--------HHHHHHHhCCCCCCCCCCCC-------ccCCCCCCCHH
Q 003109          659 TSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDS--------DDIIDALTNDPQEIGPSSWN-------SILDASGHSPY  723 (847)
Q Consensus       659 ~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~--------e~VveLLL~~p~~vGagA~v-------narD~~G~TPL  723 (847)
                                  ++|.+|..|+||||+||..++.        .+++++|+++      ||++       +.+|.+|+|||
T Consensus       168 ------------~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL  229 (260)
T 3jxi_A          168 ------------DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK------CAKLFPDTNLEALLNNDGLSPL  229 (260)
T ss_dssp             ------------CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHH
T ss_pred             ------------CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh------CcccccccchhhcccCCCCCHH
Confidence                        6799999999999999975442        4799999987      4566       78999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhccc
Q 003109          724 SYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       724 HyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |+|+.+|+.+++++|++++.+.
T Consensus       230 ~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          230 MMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhCCCc
Confidence            9999999999999999998876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.82  E-value=9.4e-20  Score=170.61  Aligned_cols=128  Identities=19%  Similarity=0.199  Sum_probs=109.3

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ...++|+.|+..|+.++++.|++.   +..+....     +. .|.||||+|++.|+.++|++|+++|+           
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~-----------   66 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTV---QSVNCRDI-----EG-RQSTPLHFAAGYNRVSVVEYLLQHGA-----------   66 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCT---TTTTCCCT-----TT-TCCCHHHHHHHTTCHHHHHHHHHTTC-----------
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHc---CCCCcccc-----cc-CCCCHHHHHHHcChHHHHHHHHhcCC-----------
Confidence            346899999999999999999875   22222221     22 47899999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                       ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|+||||+|+.+|+.+++++|++++++.
T Consensus        67 -~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  134 (165)
T 3twr_A           67 -DVHAKDKGGLVPLHNACSY-GHYEVAELLVKH------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP  134 (165)
T ss_dssp             -CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             -CCCccCCCCCCHHHHHHHc-CcHHHHHHHHhC------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence             5788999999999999985 677899999987      5689999999999999999999999999999987764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.82  E-value=1.3e-19  Score=171.36  Aligned_cols=126  Identities=20%  Similarity=0.192  Sum_probs=111.0

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++|+.|+..|+.++++.|++..    .+++..     +. .|.||||+|++.|+.++|++|+++|+            
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   71 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANG----ADVNAE-----DA-SGWTPLHLAAFNGHLEIVEVLLKNGA------------   71 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            458999999999999999999963    444432     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++++-
T Consensus        72 ~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  139 (169)
T 2y1l_E           72 DVNAVDHAGMTPLRLAALF-GHLEIVEVLLKN------GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV  139 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            5788999999999999985 678899999988      5689999999999999999999999999999987763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.82  E-value=7.1e-20  Score=170.21  Aligned_cols=119  Identities=13%  Similarity=0.123  Sum_probs=105.2

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++||+|+..|+.++++.|++..    .+++..     +. .|+||||+|++.|+.++|++|+++|+            
T Consensus        34 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   91 (153)
T 1awc_B           34 GTSPLHLAAQYGHFSTTEVLLRAG----VSRDAR-----TK-VDRTPLHMAASEGHANIVEVLLKHGA------------   91 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTT----CCTTCC-----CT-TCCCHHHHHHHHTCHHHHHHHHTTTC------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHHHcChHHHHHHHHHcCC------------
Confidence            358999999999999999999853    344322     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLV  738 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLL  738 (847)
                      ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|
T Consensus        92 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           92 DVNAKDMLKMTALHWATEH-NHQEVVELLIKY------GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            6789999999999999985 678899999998      578999999999999999999999999987

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.82  E-value=4.9e-20  Score=171.22  Aligned_cols=125  Identities=17%  Similarity=0.162  Sum_probs=109.8

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ++.++||+|+.+|+.++++.|++.    +.+.+..     +. .|.||||+|+. |+.++|++|+++|+           
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~----~~~~~~~-----~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~-----------   61 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN----NVNVNAQ-----NG-FGRTALQVMKL-GNPEIARRLLLRGA-----------   61 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS----CCCTTCC-----CT-TSCCHHHHCCS-SCHHHHHHHHHTTC-----------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC----CCCcccc-----Cc-cCccHHHHHHc-CcHHHHHHHHHcCC-----------
Confidence            457999999999999999999974    3444432     22 58999999999 99999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                       ++|.++..|.||||+|+.. +..+++++|+++      ++++|.+|.+|.||||+|+..|+.+++++|++++++
T Consensus        62 -~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           62 -NPDLKDRTGFAVIHDAARA-GFLDTLQTLLEF------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             -CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             -CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence             5788999999999999985 677899999987      568999999999999999999999999999999876

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=6.1e-20  Score=158.13  Aligned_cols=93  Identities=24%  Similarity=0.209  Sum_probs=85.0

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      +|+||||+|++.|+.++|++|+++|+            ++|.+|..|.||||+|+.. +..+++++|+++      ++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~   61 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA------------DVNAKDKNGRTPLHLAARN-GHLEVVKLLLEA------GADV   61 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTC------------CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC------------CCcccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCC
Confidence            37899999999999999999999998            5789999999999999985 678899999987      5789


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      +.+|.+|+||||+|+..|+.+++++|++++++
T Consensus        62 ~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999998864

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.81  E-value=3.6e-20  Score=173.43  Aligned_cols=123  Identities=18%  Similarity=0.167  Sum_probs=106.9

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++||+|+..|+.++++.|++..    .+++..     +. .|+||||+|++.|+.++|++|+++|+            
T Consensus        42 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   99 (165)
T 3twr_A           42 QSTPLHFAAGYNRVSVVEYLLQHG----ADVHAK-----DK-GGLVPLHNACSYGHYEVAELLVKHGA------------   99 (165)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCCHHHHHHHcChHHHHHHHHhcC----CCCCcc-----CC-CCCCHHHHHHHcCcHHHHHHHHhCCC------------
Confidence            459999999999999999999963    444433     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA  743 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a  743 (847)
                      ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|.+|.||||+|+. |+.+++++|+++++
T Consensus       100 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          100 VVNVADLWKFTPLHEAAAK-GKYEICKLLLQH------GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            5788999999999999985 678899999988      57899999999999999877 99999999998875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.81  E-value=8.6e-20  Score=171.98  Aligned_cols=126  Identities=18%  Similarity=0.147  Sum_probs=108.5

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      +++||+|+..|+.++++.|++..   ...++..     +. .|+||||+|++.|+.++|++||++|+            +
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~---~~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   61 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKG---DNLVNKP-----DE-RGFTPLIWASAFGEIETVRFLLEWGA------------D   61 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTC---SGGGGCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHHTC------------C
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcC---cccccCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            36899999999999999999863   1112211     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+..|+.+++++|++++++.
T Consensus        62 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  128 (172)
T 3v30_A           62 PHILAKERESALSLASTG-GYTDIVGLLLER------DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL  128 (172)
T ss_dssp             TTCCCTTCCCHHHHHHHT-TCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             chhhcccCCCHHHHHHHC-CCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            788999999999999985 678899999987      5689999999999999999999999999999987664

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.81  E-value=1.4e-20  Score=176.24  Aligned_cols=126  Identities=21%  Similarity=0.217  Sum_probs=108.4

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ...++||+|+..|+.++++.|++..    .+++..     +. .|+||||+|+ .|+.++|++||++|+           
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~-~~~~~~v~~Ll~~g~-----------   68 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAG----ANPNAP-----NS-YGRRPIQVMM-MGSARVAELLLLHGA-----------   68 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTT----CCTTCC-----CS-SSCCTTTSSC-TTCHHHHHHHHTTTC-----------
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHH-cCCHHHHHHHHHcCC-----------
Confidence            3468999999999999999999853    444432     22 5899999995 999999999999998           


Q ss_pred             CCCCCCCCCCCh-HHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGPGGIT-PLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~~G~T-PLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                       ++|.++..|.| |||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus        69 -~~~~~d~~g~ttpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~  137 (156)
T 1bi7_B           69 -EPNCADPATLTRPVHDAARE-GFLDTLVVLHRA------GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT  137 (156)
T ss_dssp             -CCCCCCTTTCCCHHHHHHHH-TCHHHHHHHHHH------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---
T ss_pred             -CCCCcCCCCCcHHHHHHHHC-CCHHHHHHHHHc------CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC
Confidence             67899999999 99999986 677899999987      5789999999999999999999999999999998875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.81  E-value=1.3e-19  Score=172.69  Aligned_cols=126  Identities=21%  Similarity=0.186  Sum_probs=109.0

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      .++|+.|+..|+.++++.||+.   ++.+++..     +. .|+||||+|++.|+.++|++|+++|+            +
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   64 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDN---TENDLNQG-----DD-HGFSPLHWACREGRSAVVEMLIMRGA------------R   64 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHC---TTSCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             HHHHHHHHHcCCHHHHHHHHhc---Cccccccc-----CC-CCCCHHHHHHHcCcHHHHHHHHHcCC------------C
Confidence            4679999999999999999985   23333322     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|.++..|.||||+|+.. +..+++++|+++      ++++|.+|..|.||||+|+..|+.+++++|++++++.
T Consensus        65 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  131 (179)
T 3f6q_A           65 INVMNRGDDTPLHLAASH-GHRDIVQKLLQY------KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV  131 (179)
T ss_dssp             TTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             CCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            788999999999999985 678899999988      5789999999999999999999999999999988764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.81  E-value=1.2e-19  Score=174.43  Aligned_cols=123  Identities=15%  Similarity=0.097  Sum_probs=109.0

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|+..|+.++|++|+++|+            
T Consensus        68 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------  125 (192)
T 2rfm_A           68 GSTALIWAVKNNRLGIAEKLLSKG----SNVNTK-----DF-SGKTPLMWSIIFGYSEMSYFLLEHGA------------  125 (192)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHT----CCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred             CccHHHHHHHcCCHHHHHHHHHCC----CCCCCC-----CC-CCCcHHHHHHHcCCHHHHHHHHHCCC------------
Confidence            469999999999999999999974    333322     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                      ++|.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++.+
T Consensus       126 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          126 NVNDRNLEGETPLIVASKY-GRSEIVKKLLEL------GADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            5789999999999999985 677899999987      5789999999999999999999999999998865

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.81  E-value=4.9e-20  Score=184.31  Aligned_cols=134  Identities=14%  Similarity=0.089  Sum_probs=110.8

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHH-------HhhccCchHHHHHHHcCCHHHHHHHHH---cCCC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRES-------LEMLWEIQLLNRAVKMKCRRMVDLLIH---YSLT  659 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~-------~~~l~g~TpLH~AV~~g~~eIVeLLL~---~GA~  659 (847)
                      ..+++||+|+.+|+.++++.||+..    .+++......       .....|.||||+|++.|+.++|++||+   +|+ 
T Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga-  163 (256)
T 2etb_A           89 QGHSALHIAIEKRSLQCVKLLVENG----ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA-  163 (256)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC-
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHcC----CCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC-
Confidence            3569999999999999999999963    3443221000       000028999999999999999999999   887 


Q ss_pred             CCCCCCCCcCCCCCCCCCCCChHHHHHHhc-CCcHH-------HHHHHhCCCCCCCCCCCC-------ccCCCCCCCHHH
Q 003109          660 SSNDTPQKYIFPPNLAGPGGITPLHLAACT-SDSDD-------IIDALTNDPQEIGPSSWN-------SILDASGHSPYS  724 (847)
Q Consensus       660 ~~~~s~~~~l~d~na~d~~G~TPLHlAA~~-~g~e~-------VveLLL~~p~~vGagA~v-------narD~~G~TPLH  724 (847)
                                 ++|.+|..|+||||+|+.. .+..+       ++++|+++      ||++       +.+|..|+||||
T Consensus       164 -----------~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL~  226 (256)
T 2etb_A          164 -----------SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM------GARLCPTVQLEEISNHQGLTPLK  226 (256)
T ss_dssp             -----------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH------HHHHSTTCCGGGCCCTTSCCHHH
T ss_pred             -----------CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc------CCCcccccccccccCCCCCCHHH
Confidence                       6799999999999999973 35666       99999987      5678       899999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhccc
Q 003109          725 YALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       725 yAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|+.+|+.+++++|++++.+.
T Consensus       227 ~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          227 LAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhCCCCC
Confidence            999999999999999998765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.81  E-value=9.5e-20  Score=170.92  Aligned_cols=125  Identities=19%  Similarity=0.180  Sum_probs=109.8

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      .++||+|+..|+.++++.|++..    .+++..     +. .|+||||+|++.|+.++|++|+++|+            +
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   61 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQE----NVINHT-----DE-EGFTPLMWAAAHGQIAVVEFLLQNGA------------D   61 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHS----SCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             cchHHHHHHCCCHHHHHHHHHcC----CCcCCC-----CC-CCCCHHHHHHHCCCHHHHHHHHHcCC------------C
Confidence            47899999999999999999973    333322     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++..+..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus        62 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  128 (167)
T 3v31_A           62 PQLLGKGRESALSLACSK-GYTDIVKMLLDC------GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP  128 (167)
T ss_dssp             TTCCCTTCCCHHHHHHHH-TCHHHHHHHHHH------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCcCCCCCcHHHHHHHc-CCHHHHHHHHHC------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            788999999999999986 677899999987      5689999999999999999999999999999987764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.81  E-value=1.5e-19  Score=186.53  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=116.9

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..++|||+|+.+|+.+++++||+..    .+.+..      ...|.||||+|+..++.+++++||++|+           
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~----a~~~~~------~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-----------  143 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHG----ANAGAR------NADQAVPLHLACQQGHFQVVKCLLDSNA-----------  143 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTT----CCTTCC------CTTCCCHHHHHHHHTCHHHHHHHHHTTC-----------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcC----CCcCcc------CCCCCCccccccccChHHHHHHHHHCCC-----------
Confidence            3569999999999999999999863    333322      2258999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----  745 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~----  745 (847)
                       ++|.+|..|+||||+||.. |..+++++|+++      ||++|.+|..|+||||+|+.+|+.++|++|++++++-    
T Consensus       144 -~~n~~d~~g~TpL~~A~~~-g~~~~v~~Ll~~------gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d  215 (269)
T 4b93_B          144 -KPNKKDLSGNTPLIYACSG-GHHELVALLLQH------GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN  215 (269)
T ss_dssp             -CSCCCCTTCCCHHHHHHHT-TCGGGHHHHHHT------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             -CCCCCCCCCCCHHHHHHHC-CCHHHHHHHHHC------CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence             6799999999999999985 677899999987      5789999999999999999999999999999998875    


Q ss_pred             cCCccccccC
Q 003109          746 RNGQVTIPVG  755 (847)
Q Consensus       746 ~~~~v~~~i~  755 (847)
                      .+|.--+.+.
T Consensus       216 ~~G~TpL~~A  225 (269)
T 4b93_B          216 KRQRTAVDCA  225 (269)
T ss_dssp             TTSCCSGGGS
T ss_pred             CCCCCHHHHH
Confidence            2455555554

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.81  E-value=2.9e-19  Score=171.28  Aligned_cols=125  Identities=19%  Similarity=0.179  Sum_probs=106.2

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCcC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYS-LTSSNDTPQKYI  669 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~G-A~~~~~s~~~~l  669 (847)
                      .+++||+|+..|+.++++.|++.   ++.+.+..     +. .|.||||+|++.|+.++|++|+++| +           
T Consensus        72 g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------  131 (201)
T 3hra_A           72 SDSPYLYAGAQGRTEILAYMLKH---ATPDLNKH-----NR-YGGNALIPAAEKGHIDNVKLLLEDGRE-----------  131 (201)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCC-----CT-TSCCSHHHHHHTTCHHHHHHHHHHCCC-----------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhc---cCcccccc-----cC-CCCcHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence            45899999999999999999975   33344322     22 5889999999999999999999998 4           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCC----cHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          670 FPPNLAGPGGITPLHLAACTSD----SDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g----~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                       ++|.++..|.||||+|+..+.    ..+++++|+++      |++++.+|..|.||||+|+.+|+.+++++|++++
T Consensus       132 -~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          132 -DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN------GADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             -CTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             -CcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHC------CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence             678899999999999998644    27899999988      5789999999999999999999999999998764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.81  E-value=1.6e-19  Score=167.21  Aligned_cols=122  Identities=20%  Similarity=0.216  Sum_probs=80.7

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++|++|+..|..++++.|++. .  +.+.+..     +. .|.||||+ +..|+.++|++|+++|+            
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~--~~~~~~~-----~~-~g~t~L~~-~~~~~~~~v~~Ll~~g~------------   59 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-E--LVHPDAL-----NR-FGKTALQV-MMFGSTAIALELLKQGA------------   59 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-T--CCCTTCC-----CT-TSCCHHHH-SCTTCHHHHHHHHHTTC------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-h--CcCcccc-----CC-CCCcHHHH-HHcCCHHHHHHHHHCCC------------
Confidence            45677777777777777777765 1  1222222     12 36677777 77777777777777776            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  741 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K  741 (847)
                      ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|.+|+||||+|+.+|+.+++++|+++
T Consensus        60 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           60 SPNVQDTSGTSPVHDAART-GFLDTLKVLVEH------GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            4566677777777777764 556677777765      356777777777777777777777777777665

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.81  E-value=1.2e-19  Score=181.39  Aligned_cols=143  Identities=20%  Similarity=0.153  Sum_probs=110.1

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhcc-------------------------------------------ccCCCCcH
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGN-------------------------------------------LSMDGLSR  626 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~-------------------------------------------vdid~~s~  626 (847)
                      ..+++||+|+..|+.++++.|++......                                           ++++.   
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  153 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA---  153 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC---
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCC---
Confidence            34699999999999999999997432100                                           00110   


Q ss_pred             HHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCC
Q 003109          627 ESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQE  705 (847)
Q Consensus       627 ~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~-~G~TPLHlAA~~~g~e~VveLLL~~p~~  705 (847)
                         ....|.||||+|++.|+.++|++||++|+            ++|.++. .|.||||+||.. +..+++++|+++   
T Consensus       154 ---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------------~~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~---  214 (282)
T 1oy3_D          154 ---ENYDGHTPLHVAVIHKDAEMVRLLRDAGA------------DLNKPEPTCGRTPLHLAVEA-QAASVLELLLKA---  214 (282)
T ss_dssp             ---CCTTSCCHHHHHHHTTCHHHHHHHHHHTC------------CTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHT---
T ss_pred             ---cCCCCcCHHHHHHHcCCHHHHHHHHHcCC------------CCCCCCCCCCcCHHHHHHHc-CCHHHHHHHHHc---
Confidence               11258999999999999999999999998            5677775 499999999985 678899999998   


Q ss_pred             CCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcccc----CCccccccCcc
Q 003109          706 IGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRR----NGQVTIPVGVE  757 (847)
Q Consensus       706 vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~~----~~~v~~~i~~~  757 (847)
                         |+++|.+|..|.||||+|+.+|+.+++++|++++++..    +|..-+.+..+
T Consensus       215 ---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          215 ---GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             ---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------------
T ss_pred             ---CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence               57899999999999999999999999999999999872    45555554443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.80  E-value=1.7e-19  Score=180.38  Aligned_cols=132  Identities=22%  Similarity=0.243  Sum_probs=108.8

Q ss_pred             hhHHHHHHH---hcCchhHHHHHHHHHHhcc-------ccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 003109          591 FKFLLVFSV---DRGCCALVKAILDILVEGN-------LSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTS  660 (847)
Q Consensus       591 ~k~LL~FAv---drGw~AVVK~LLd~l~~g~-------vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~  660 (847)
                      .+++||+|+   ..|+.++++.||+...+.+       .....      ....|+||||+|++.|+.+||++||++|++ 
T Consensus        46 g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-  118 (260)
T 3jxi_A           46 GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD------VYYRGQTALHIAIERRCKHYVELLVEKGAD-  118 (260)
T ss_dssp             CCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC------SSEESBCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             CCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc------cccCCCCHHHHHHHcCCHHHHHHHHhCCCC-
Confidence            469999999   7799999999999865421       11110      111589999999999999999999999984 


Q ss_pred             CCCCCCCcCCCCCCCC--------------CCCChHHHHHHhcCCcHHHHHHHhCCCCCCC-CCCCCccCCCCCCCHHHH
Q 003109          661 SNDTPQKYIFPPNLAG--------------PGGITPLHLAACTSDSDDIIDALTNDPQEIG-PSSWNSILDASGHSPYSY  725 (847)
Q Consensus       661 ~~~s~~~~l~d~na~d--------------~~G~TPLHlAA~~~g~e~VveLLL~~p~~vG-agA~vnarD~~G~TPLHy  725 (847)
                                 +|.++              ..|.||||+||.. +..+++++|++.    | .++++|.+|.+|+||||+
T Consensus       119 -----------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~----~~~ga~~~~~d~~g~TpLh~  182 (260)
T 3jxi_A          119 -----------VHAQARGRFFQPKDEGGYFYFGELPLSLAACT-NQPHIVHYLTEN----GHKQADLRRQDSRGNTVLHA  182 (260)
T ss_dssp             -----------TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT-TCHHHHHHHHHC----SSCCCCTTCCCTTSCCHHHH
T ss_pred             -----------cCccccccccCcccccccccCCCCHHHHHHHc-CCHHHHHHHHhc----cccCCCCcccCCCCCcHHHH
Confidence                       45554              6899999999985 678899999993    1 267899999999999999


Q ss_pred             HHHcCC---------HHHHHHHHHhhccc
Q 003109          726 ALMKNN---------HAYNKLVARKLADR  745 (847)
Q Consensus       726 Aa~~G~---------~eiIeLLl~K~a~~  745 (847)
                      |++.|+         .+++++|++++++.
T Consensus       183 A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          183 LVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             HHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            999888         79999999998875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.80  E-value=2e-19  Score=166.58  Aligned_cols=121  Identities=18%  Similarity=0.184  Sum_probs=106.0

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+ +..|+.++++.|++..    .+++..     +. .|.||||+|++.|+.++|++|+++|+            
T Consensus        36 g~t~L~~-~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   92 (156)
T 1bd8_A           36 GKTALQV-MMFGSTAIALELLKQG----ASPNVQ-----DT-SGTSPVHDAARTGFLDTLKVLVEHGA------------   92 (156)
T ss_dssp             SCCHHHH-SCTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCcHHHH-HHcCCHHHHHHHHHCC----CCCCCc-----CC-CCCCHHHHHHHcCcHHHHHHHHHcCC------------
Confidence            4699999 9999999999999863    444432     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                      ++|.+|..|.||||+|+.. +..+++++|+++       ++++.+|.+|.||||+|+.+|+.+++++|++++
T Consensus        93 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~-------~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  156 (156)
T 1bd8_A           93 DVNVPDGTGALPIHLAVQE-GHTAVVSFLAAE-------SDLHRRDARGLTPLELALQRGAQDLVDILQGHM  156 (156)
T ss_dssp             CSCCCCTTSCCHHHHHHHH-TCHHHHHHHHTT-------SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTTC
T ss_pred             CCCCcCCCCCcHHHHHHHh-ChHHHHHHHHhc-------cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhhC
Confidence            5789999999999999985 678899999985       468999999999999999999999999998763

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.80  E-value=2.2e-19  Score=179.63  Aligned_cols=138  Identities=22%  Similarity=0.244  Sum_probs=109.4

Q ss_pred             hhhHHHHHHHhc---CchhHHHHHHHHHHhcc-cc--CCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 003109          590 RFKFLLVFSVDR---GCCALVKAILDILVEGN-LS--MDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSND  663 (847)
Q Consensus       590 R~k~LL~FAvdr---Gw~AVVK~LLd~l~~g~-vd--id~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~  663 (847)
                      ..+++||+|+..   |+.++++.||+...+.+ .+  ++.... . ....|.||||+|++.|+.++|++||++|++    
T Consensus        42 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~-~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----  115 (256)
T 2etb_A           42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT-D-EFYQGHSALHIAIEKRSLQCVKLLVENGAD----  115 (256)
T ss_dssp             TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC-S-TTTTTCCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred             CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc-c-ccccCCCHHHHHHHcCCHHHHHHHHHcCCC----
Confidence            346999999999   99999999999876522 00  000000 0 012489999999999999999999999984    


Q ss_pred             CCCCcCCCCCCCCCC-------------CChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHH--
Q 003109          664 TPQKYIFPPNLAGPG-------------GITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALM--  728 (847)
Q Consensus       664 s~~~~l~d~na~d~~-------------G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~--  728 (847)
                              +|.++..             |.||||+||.. +..+++++|++.+.   .++++|.+|.+|+||||+|+.  
T Consensus       116 --------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~---~ga~~n~~d~~g~TpLh~A~~~~  183 (256)
T 2etb_A          116 --------VHLRACGRFFQKHQGTCFYFGELPLSLAACT-KQWDVVTYLLENPH---QPASLEATDSLGNTVLHALVMIA  183 (256)
T ss_dssp             --------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT-TCHHHHHHHHHCSS---CCCCTTCCCTTSCCHHHHHHHHC
T ss_pred             --------CCcccccccccccccccccCCCCHHHHHHHc-CCHHHHHHHHhccc---cCCCcCccCCCCCCHHHHHHHcc
Confidence                    4555544             99999999985 67889999998310   167899999999999999999  


Q ss_pred             cCCHH-------HHHHHHHhhccc
Q 003109          729 KNNHA-------YNKLVARKLADR  745 (847)
Q Consensus       729 ~G~~e-------iIeLLl~K~a~~  745 (847)
                      +|+.+       ++++|++++++.
T Consensus       184 ~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          184 DNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHHHHcCCCc
Confidence            88988       999999998875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.80  E-value=9.7e-20  Score=184.22  Aligned_cols=134  Identities=13%  Similarity=0.105  Sum_probs=109.5

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHH--------HHhhccCchHHHHHHHcCCHHHHHHHHH---cCC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRE--------SLEMLWEIQLLNRAVKMKCRRMVDLLIH---YSL  658 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~--------~~~~l~g~TpLH~AV~~g~~eIVeLLL~---~GA  658 (847)
                      ..+++||+|+..|+.+++++||+..    .+++.....        ......|.||||+|++.|+.++|++||+   +|+
T Consensus       100 ~g~tpL~~A~~~g~~~~v~~Ll~~g----a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  175 (273)
T 2pnn_A          100 KGQTALHIAIERRNMTLVTLLVENG----ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA  175 (273)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCC----CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence            3569999999999999999999963    344322100        0000148999999999999999999999   887


Q ss_pred             CCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCc--------HHHHHHHhCCCCCCCCCCCCc-------cCCCCCCCHH
Q 003109          659 TSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDS--------DDIIDALTNDPQEIGPSSWNS-------ILDASGHSPY  723 (847)
Q Consensus       659 ~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~--------e~VveLLL~~p~~vGagA~vn-------arD~~G~TPL  723 (847)
                                  ++|.+|..|+||||+|+..++.        .+++++|+++      ++++|       .+|.+|+|||
T Consensus       176 ------------d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~------ga~~n~~~~~~~~~d~~g~TpL  237 (273)
T 2pnn_A          176 ------------DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL------GAKLHPTLKLEEITNRKGLTPL  237 (273)
T ss_dssp             ------------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHH
T ss_pred             ------------CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh------hhhcccccccccccCCCCCCHH
Confidence                        6789999999999999986442        5799999987      45675       5999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhccc
Q 003109          724 SYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       724 HyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |+|+.+|+.+++++|++++++.
T Consensus       238 ~~A~~~g~~~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          238 ALAASSGKIGVLAYILQREIHE  259 (273)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTC-
T ss_pred             HHHHHhChHHHHHHHHHCCCCC
Confidence            9999999999999999999954

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.80  E-value=2.5e-19  Score=175.77  Aligned_cols=132  Identities=18%  Similarity=0.141  Sum_probs=109.0

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHH--------HHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRE--------SLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS  661 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~--------~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~  661 (847)
                      ..+++||+|+.+|+.++++.|++..    .+++.....        ..+ ..|.||||+|++.|+.++|++||++|+   
T Consensus        74 ~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga---  145 (232)
T 2rfa_A           74 EGQTALHIAVINQNVNLVRALLARG----ASVSARATGSVFHYRPHNLI-YYGEHPLSFAACVGSEEIVRLLIEHGA---  145 (232)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCCSGGGSCCTTCSC-CCCSSHHHHHHHHTCHHHHHHHHHTTC---
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHhCC----CCCCcccCCcceeecccccc-cCCCCHHHHHHHcCCHHHHHHHHHCCC---
Confidence            3469999999999999999999964    333322100        001 148999999999999999999999998   


Q ss_pred             CCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHH----HHHhCCCCCCCCCCCC------ccCCCCCCCHHHHHHHcCC
Q 003109          662 NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDII----DALTNDPQEIGPSSWN------SILDASGHSPYSYALMKNN  731 (847)
Q Consensus       662 ~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~Vv----eLLL~~p~~vGagA~v------narD~~G~TPLHyAa~~G~  731 (847)
                               ++|.+|..|.||||+|+.. +..+++    ++|+++      +++.      +.+|..|+||||+|+.+|+
T Consensus       146 ---------~~~~~d~~g~t~L~~A~~~-~~~~~~~~i~~~Ll~~------g~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          146 ---------DIRAQDSLGNTVLHILILQ-PNKTFACQMYNLLLSY------DGGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             ---------CTTCCCTTSCCHHHHHHTC-SCHHHHHHHHHHHHHT------TCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             ---------CCCCCCCCCCCHHHHHHHc-CChHHHHHHHHHHHhc------CCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence                     6799999999999999985 566666    999987      3444      6899999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 003109          732 HAYNKLVARKLADR  745 (847)
Q Consensus       732 ~eiIeLLl~K~a~~  745 (847)
                      .+++++|++++...
T Consensus       210 ~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          210 IVMFQHLMQKRKHI  223 (232)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCccc
Confidence            99999999998776

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.80  E-value=6.3e-19  Score=172.68  Aligned_cols=130  Identities=19%  Similarity=0.198  Sum_probs=111.9

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++......++.+..     +. .|.||||+|++.|+.+++++|+++|+            
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------  140 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR-----NY-DGLTALHVAVNTECQETVQLLLERGA------------  140 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc-----Cc-CCCcHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            4589999999999999999999854333343322     22 58999999999999999999999998            


Q ss_pred             CCCCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d-~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +++..+ ..|.||||+|+.. +..+++++|+++      ++++|.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus       141 ~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  209 (241)
T 1k1a_A          141 DIDAVDIKSGRSPLIHAVEN-NSLSMVQLLLQH------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS  209 (241)
T ss_dssp             CTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CcccccccCCCcHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            567777 7899999999985 678899999988      5789999999999999999999999999999998774

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.80  E-value=3.1e-19  Score=183.58  Aligned_cols=135  Identities=21%  Similarity=0.146  Sum_probs=107.5

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHH-hcc-ccCCCCcHHHHh---------------------------hccCchHHHH
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILV-EGN-LSMDGLSRESLE---------------------------MLWEIQLLNR  640 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~-~g~-vdid~~s~~~~~---------------------------~l~g~TpLH~  640 (847)
                      ..+++||+|+..|+.++++.||+... +-+ .+.....+....                           ...|+||||+
T Consensus       110 ~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~  189 (276)
T 4hbd_A          110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALML  189 (276)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            34699999999999999999999643 100 011111111100                           1148899999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhC-CCCCCCCCCCCccCCCCC
Q 003109          641 AVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTN-DPQEIGPSSWNSILDASG  719 (847)
Q Consensus       641 AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~-~p~~vGagA~vnarD~~G  719 (847)
                      |+++|+.++|++||++|+            ++|.+|..|+||||+|+.. +..+++++|++ .      +++++.+|.+|
T Consensus       190 A~~~g~~~~v~~Ll~~ga------------d~n~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~~------gad~~~~d~~g  250 (276)
T 4hbd_A          190 AVSHGRVDVVKALLACEA------------DVNVQDDDGSTALMCACEH-GHKEIAGLLLAVP------SCDISLTDRDG  250 (276)
T ss_dssp             HHHTTCHHHHHHHHHTTC------------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHTST------TCCTTCCCTTS
T ss_pred             HHHcCCHHHHHHHHhCCC------------CCCCCCCCCCCHHHHHHHC-CCHHHHHHHHhcC------CCCCcCcCCCC
Confidence            999999999999999998            6789999999999999986 67789999998 4      57899999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhhc
Q 003109          720 HSPYSYALMKNNHAYNKLVARKLA  743 (847)
Q Consensus       720 ~TPLHyAa~~G~~eiIeLLl~K~a  743 (847)
                      +||||+|+.+|+.+++++|+++.+
T Consensus       251 ~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          251 STALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccC
Confidence            999999999999999999998865

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.80  E-value=2.9e-19  Score=185.83  Aligned_cols=143  Identities=18%  Similarity=0.125  Sum_probs=117.9

Q ss_pred             hhhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCC
Q 003109          589 SRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM---KCRRMVDLLIHYSLTSSNDTP  665 (847)
Q Consensus       589 ~R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~---g~~eIVeLLL~~GA~~~~~s~  665 (847)
                      ...-..|+.|+..|....++.|+...    .+.............|+||||+|++.   |+.++|++||++|+       
T Consensus       128 ~~~l~~l~~a~~~~d~~~~~~ll~~g----~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga-------  196 (278)
T 1dcq_A          128 AAKLHSLCEAVKTRDIFGLLQAYADG----VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-------  196 (278)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTT----CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-------
T ss_pred             chhhhhhhhHhhhcccHHHHHHHHhh----cchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCC-------
Confidence            34457899999999999999888853    33221100000112489999999999   99999999999998       


Q ss_pred             CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          666 QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       666 ~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                           ++|.+|..|.||||+||.. |+.+++++|+++      ||+++++|.+|.||||+|+..|+.+++++|+++++++
T Consensus       197 -----~in~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          197 -----NLDKQTGKGSTALHYCCLT-DNAECLKLLLRG------KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             -----CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             -----CccccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                 6799999999999999985 678899999997      6789999999999999999999999999999999998


Q ss_pred             cCCcccccc
Q 003109          746 RNGQVTIPV  754 (847)
Q Consensus       746 ~~~~v~~~i  754 (847)
                      .+.|+.+.+
T Consensus       265 ~~~~~~v~~  273 (278)
T 1dcq_A          265 FNSHVHVEY  273 (278)
T ss_dssp             CCSSCCCCC
T ss_pred             CCcceeeec
Confidence            777766654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.80  E-value=3.7e-19  Score=174.57  Aligned_cols=143  Identities=16%  Similarity=0.123  Sum_probs=112.7

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhcc-ccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGN-LSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTP-QK  667 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~-vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~-~~  667 (847)
                      ..+++||+|+..|+.++++.|++...+-. ...+.     .+. .|.||||+|++.|+.++|++|+++|++...... ..
T Consensus        36 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-----~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  109 (232)
T 2rfa_A           36 MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS-----ELY-EGQTALHIAVINQNVNLVRALLARGASVSARATGSV  109 (232)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCS-----TTT-TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccc-----cCC-CCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcc
Confidence            34689999999999999999999754311 00011     122 589999999999999999999999996422111 12


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHHhhc
Q 003109          668 YIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYN----KLVARKLA  743 (847)
Q Consensus       668 ~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiI----eLLl~K~a  743 (847)
                      +.+.++..+..|.||||+|+.. +..+++++|+++      |+++|.+|..|+||||+|+.+|+.+++    ++|+++++
T Consensus       110 ~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~  182 (232)
T 2rfa_A          110 FHYRPHNLIYYGEHPLSFAACV-GSEEIVRLLIEH------GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG  182 (232)
T ss_dssp             GSCCTTCSCCCCSSHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred             eeecccccccCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            2334566677999999999986 677899999987      578999999999999999999999988    88888877


Q ss_pred             cc
Q 003109          744 DR  745 (847)
Q Consensus       744 ~~  745 (847)
                      +.
T Consensus       183 ~~  184 (232)
T 2rfa_A          183 GD  184 (232)
T ss_dssp             SC
T ss_pred             ch
Confidence            54

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.80  E-value=1e-19  Score=173.25  Aligned_cols=126  Identities=18%  Similarity=0.165  Sum_probs=112.0

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|+..|+.++|++||++|+            
T Consensus        39 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   96 (179)
T 3f6q_A           39 GFSPLHWACREGRSAVVEMLIMRG----ARINVM-----NR-GDDTPLHLAASHGHRDIVQKLLQYKA------------   96 (179)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            458999999999999999999863    444432     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+..++.+++++|++++++.
T Consensus        97 ~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A           97 DINAVNEHGNVPLHYACFW-GQDQVAEDLVAN------GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCccCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            5789999999999999985 678899999998      5789999999999999999999999999999998876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.80  E-value=1.4e-19  Score=162.82  Aligned_cols=116  Identities=14%  Similarity=0.089  Sum_probs=97.4

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++||+|+..|+.++++.|++..    .+++..     +. .|+||||+|++.|+.++|++|+++|+            
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   64 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKG----EDVNRT-----LE-GGRKPLHYAADCGQLEILEFLLLKGA------------   64 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT----CCTTSC-----CT-TSSCHHHHHHHTTCHHHHHHHHTTTC------------
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcC----CCcCcc-----CC-CCCcHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            468999999999999999999853    344332     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLV  738 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLL  738 (847)
                      ++|.+|..|+||||+|+.. +..+++++|+++      +++++.+|.+|.||||+|+.   .++.++|
T Consensus        65 ~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~---~~~~~ll  122 (123)
T 3aaa_C           65 DINAPDKHHITPLLSAVYE-GHVSCVKLLLSK------GADKTVKGPDGLTAFEATDN---QAIKALL  122 (123)
T ss_dssp             CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHCCC---HHHHHHH
T ss_pred             CCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHhCC---HHHHHHh
Confidence            5789999999999999985 677899999987      57899999999999999954   4444444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.79  E-value=3.9e-19  Score=179.82  Aligned_cols=148  Identities=16%  Similarity=0.084  Sum_probs=109.3

Q ss_pred             hhhHHHHHHHhc---CchhHHHHHHHHHHhcc-----ccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 003109          590 RFKFLLVFSVDR---GCCALVKAILDILVEGN-----LSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS  661 (847)
Q Consensus       590 R~k~LL~FAvdr---Gw~AVVK~LLd~l~~g~-----vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~  661 (847)
                      ..+++||+|+..   |+.++++.||+...+.+     ++.+...   .+. .|+||||+|++.|+.++|++||++|++..
T Consensus        53 ~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~---~d~-~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  128 (273)
T 2pnn_A           53 TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD---SYY-KGQTALHIAIERRNMTLVTLLVENGADVQ  128 (273)
T ss_dssp             TCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCS---TTT-TTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccc---ccC-CCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            346999999986   99999999999865421     1111000   012 58999999999999999999999998431


Q ss_pred             CCCCCCc--CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCC--------
Q 003109          662 NDTPQKY--IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNN--------  731 (847)
Q Consensus       662 ~~s~~~~--l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~--------  731 (847)
                      .....++  ..+.+..+..|.||||+||.. +..+++++|++.+.   .++++|.+|.+|+||||+|+..|+        
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~---~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~  204 (273)
T 2pnn_A          129 AAANGDFFKKTKGRPGFYFGELPLSLAACT-NQLAIVKFLLQNSW---QPADISARDSVGNTVLHALVEVADNTVDNTKF  204 (273)
T ss_dssp             CCBCSGGGSSCSSSCCCCSCBSHHHHHHHT-TCHHHHHHHHHCSS---CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHH
T ss_pred             ccccccccccccccccccCCCCHHHHHHHc-CCHHHHHHHHhccc---CCCCceeeCCCCCcHHHHHHHccCcchhHHHH
Confidence            1000000  001122334899999999985 67889999999310   267899999999999999999998        


Q ss_pred             -HHHHHHHHHhhccc
Q 003109          732 -HAYNKLVARKLADR  745 (847)
Q Consensus       732 -~eiIeLLl~K~a~~  745 (847)
                       .+++++|++++++.
T Consensus       205 ~~~~v~~Ll~~ga~~  219 (273)
T 2pnn_A          205 VTSMYNEILILGAKL  219 (273)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhc
Confidence             89999999998875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.79  E-value=3.1e-20  Score=169.61  Aligned_cols=125  Identities=20%  Similarity=0.142  Sum_probs=103.7

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+..|+.++++.|++..    .+++..     +. .|+||||+|++.|+.++|++|+++|+           
T Consensus         9 ~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~-----------   67 (137)
T 3c5r_A            9 RGETLLHIASIKGDIPSVEYLLQNG----SDPNVK-----DH-AGWTPLHEACNHGHLKVVELLLQHKA-----------   67 (137)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTT----CCSCCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC----CCCCcC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence            4568999999999999999999853    344432     22 58999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA  743 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a  743 (847)
                       +++.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+..++.+++++|.+..+
T Consensus        68 -~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           68 -LVNTTGYQNDSPLHDAAKN-GHVDIVKLLLSY------GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             -CTTCCCGGGCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             -cccCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence             5788999999999999985 677899999987      56899999999999999999999998888776543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.79  E-value=4.7e-19  Score=172.62  Aligned_cols=129  Identities=21%  Similarity=0.172  Sum_probs=109.2

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++....  .+++..     +. .|.||||+|++.|+.+++++|+++|+            
T Consensus        72 g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------  131 (228)
T 2dzn_A           72 GWTPFHIACSVGNLEVVKSLYDRPLK--PDLNKI-----TN-QGVTCLHLAVGKKWFEVSQFLIENGA------------  131 (228)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHSSSSC--CCTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCC--cccccC-----Cc-CCCCHHHHHHHcCCHhHHHHHHHcCC------------
Confidence            45899999999999999999985311  333322     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH-Hhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVA-RKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl-~K~a~~  745 (847)
                      +++.++..|.||||+|+.. +..+++++|+++    | .+++|.+|..|+||||+|+.+|+.+++++|+ +++++.
T Consensus       132 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~----g-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~  201 (228)
T 2dzn_A          132 SVRIKDKFNQIPLHRAASV-GSLKLIELLCGL----G-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY  201 (228)
T ss_dssp             CSCCCCTTSCCHHHHHHHT-TCHHHHHHHHTT----T-CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred             CccccCCCCCCHHHHHHHc-CCHHHHHHHHhc----C-cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC
Confidence            5789999999999999985 678899999987    2 2689999999999999999999999999999 777765

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.79  E-value=7.9e-19  Score=170.85  Aligned_cols=125  Identities=16%  Similarity=0.144  Sum_probs=73.5

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      +++||+|+..|+.++++.|++..   ..+.+..     +. .|.||||+|++.|+.++|++|+++|+            +
T Consensus        59 ~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~  117 (223)
T 2f8y_A           59 RTPLHAAVSADAQGVFQILIRNR---ATDLDAR-----MH-DGTTPLILAARLAVEGMLEDLINSHA------------D  117 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHBT---TSCTTCC-----CT-TCCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC---CCCcccC-----CC-CCCcHHHHHHHhCcHHHHHHHHHcCC------------C
Confidence            46666666666666666666632   1112111     11 35666666666666666666666665            3


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      +|.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++++
T Consensus       118 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  183 (223)
T 2f8y_A          118 VNAVDDLGKSALHWAAAV-NNVDAAVVLLKN------GANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN  183 (223)
T ss_dssp             TTCBCTTSCBHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CcCcCCCCCcHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            455566666666666653 445566666655      345666666666666666666666666666666554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.79  E-value=1e-18  Score=171.03  Aligned_cols=126  Identities=17%  Similarity=0.130  Sum_probs=107.6

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|++.|+.+++++|+++|+            
T Consensus        73 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------  130 (231)
T 3aji_A           73 GWSPLHIAASAGXDEIVKALLVKG----AHVNAV-----NQ-NGCTPLHYAASKNRHEIAVMLLEGGA------------  130 (231)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCCHHHHHHHcCHHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            458999999999999999999853    344322     22 48899999999999999999999988            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +++.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++++-
T Consensus       131 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  198 (231)
T 3aji_A          131 NPDAKDHYDATAMHRAAAK-GNLKMVHILLFY------KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI  198 (231)
T ss_dssp             CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             CCCCcCCCCCcHHHHHHHc-CCHHHHHHHHhc------CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence            5788899999999999986 667799999987      5679999999999999999999999999999988764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.79  E-value=6.4e-19  Score=176.17  Aligned_cols=136  Identities=18%  Similarity=0.089  Sum_probs=107.4

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+.+|+.++++.||+...... .++..     +. .|+||||+|++.|+.++|++||++|+           
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~-----~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga-----------   69 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAGHE-YLDLQ-----ND-LGQTALHLAAILGEASTVEKLYAAGA-----------   69 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSG-GGGCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC-----------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcc-ccccc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence            34699999999999999999999754311 01211     22 58999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCC-----------------------------------------CC
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEI-----------------------------------------GP  708 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~v-----------------------------------------Ga  708 (847)
                       +++.++..|+||||+|+.. +..+++++|+++....                                         ..
T Consensus        70 -~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (282)
T 1oy3_D           70 -GVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW  147 (282)
T ss_dssp             -CSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCG
T ss_pred             -CCCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhh
Confidence             5688888999999999874 6777999988762110                                         01


Q ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          709 SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       709 gA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +++++.+|..|.||||+|+++|+.+++++|++++++-
T Consensus       148 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  184 (282)
T 1oy3_D          148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL  184 (282)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred             hhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            2347888999999999999999999999999887664

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.79  E-value=3.2e-19  Score=187.69  Aligned_cols=132  Identities=16%  Similarity=0.134  Sum_probs=113.5

Q ss_pred             hhhHHHHHHHhcC--chhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 003109          590 RFKFLLVFSVDRG--CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQK  667 (847)
Q Consensus       590 R~k~LL~FAvdrG--w~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~  667 (847)
                      ...++||+|+..|  +.++++.||+..    .+++..     +. .|+||||+|++.|+.++|++||++|++.       
T Consensus       137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~g----a~~~~~-----d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------  199 (364)
T 3ljn_A          137 KGQTALHWCVGLGPEYLEMIKILVQLG----ASPTAK-----DK-ADETPLMRAMEFRNREALDLMMDTVPSK-------  199 (364)
T ss_dssp             SCCCHHHHHHHSCGGGHHHHHHHHHHT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHHCSCS-------
T ss_pred             CCCCHHHHHHHcCCchHHHHHHHHHcC----CCCccc-----CC-CCCCHHHHHHHcCCHHHHHHHHhccccc-------
Confidence            3469999999999  999999999974    344322     22 5899999999999999999999999841       


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          668 YIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       668 ~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ...++|.++..|.||||+||.. ++.+++++|+++      ||++|.+|..|+||||+|+.+|+.+++++|++++++.
T Consensus       200 ~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          200 SSLRLDYANKQGNSHLHWAILI-NWEDVAMRFVEM------GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             SSCCTTCCCTTCCCTTHHHHTT-TCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             ccccccccCCCCCcHHHHHHHc-CCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            1124789999999999999984 778899999998      5789999999999999999999999999999987663

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.79  E-value=2.4e-19  Score=177.25  Aligned_cols=133  Identities=20%  Similarity=0.192  Sum_probs=109.9

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+..|+.++++.|++.........    ........|.||||+|++.|+.++|++||++|+           
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----------  141 (236)
T 1ikn_D           77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHS----ILKATNYNGHTCLHLASIHGYLGIVELLVSLGA-----------  141 (236)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSC----GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccchhHHH----HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence            34689999999999999999999643211000    000112258999999999999999999999998           


Q ss_pred             CCCCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~-~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                       ++|.++. .|.||||+|+.. +..+++++|+++      ||+++.+|..|+||||+|+.+|+.+++++|++++++.
T Consensus       142 -~~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          142 -DVNAQEPCNGRTALHLAVDL-QNPDLVSLLLKC------GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             -CTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHTT------TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             -CCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence             5788887 999999999985 678899999987      5789999999999999999999999999999998875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.79  E-value=5.2e-19  Score=177.70  Aligned_cols=125  Identities=16%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      +++||+|+..|+.++++.|++...   .+.+..     +. .|.||||+|++.|+.++|++|+++|+            +
T Consensus        91 ~t~L~~A~~~~~~~~v~~Ll~~~~---~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~  149 (253)
T 1yyh_A           91 RTPLHAAVSADAQGVFQILIRNRA---TDLDAR-----MH-DGTTPLILAARLAVEGMLEDLINSHA------------D  149 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTT---SCTTCC-----CT-TCCCHHHHHHHHTCSSHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC---CCcccc-----CC-CCCcHHHHHHHcChHHHHHHHHHcCC------------C
Confidence            366666666666666666665321   122211     11 35666666666666666666666665            4


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      +|.++..|.||||+|+.. +..+++++|+++      |++++.+|..|.||||+|+.+|+.+++++|++++++
T Consensus       150 ~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  215 (253)
T 1yyh_A          150 VNAVDDLGKSALHWAAAV-NNVDAAVVLLKN------GANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN  215 (253)
T ss_dssp             TTCBCTTSCBHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            556666666666666664 445566666665      345666666666666666666666666666666554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.79  E-value=8.1e-19  Score=170.77  Aligned_cols=126  Identities=15%  Similarity=0.139  Sum_probs=111.8

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|++.|+.++|++|+++|+            
T Consensus        92 g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------  149 (223)
T 2f8y_A           92 GTTPLILAARLAVEGMLEDLINSH----ADVNAV-----DD-LGKSALHWAAAVNNVDAAVVLLKNGA------------  149 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTT----CCTTCB-----CT-TSCBHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCcHHHHHHHhCcHHHHHHHHHcC----CCCcCc-----CC-CCCcHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            458999999999999999999953    344322     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|+++++.+
T Consensus       150 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          150 NKDMQNNREETPLFLAARE-GSYETAKVLLDH------FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             CCCCcCCCCcCHHHHHHHc-CCHHHHHHHHHc------CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            6789999999999999985 677899999998      5789999999999999999999999999999998876

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.79  E-value=2e-18  Score=175.19  Aligned_cols=148  Identities=16%  Similarity=0.102  Sum_probs=116.2

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc--
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY--  668 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~--  668 (847)
                      .+++||+|+..|+.++++.|++..    .+++..     +. .|+||||+|+..|+.++|++||++|++....+..+.  
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~-----~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  142 (299)
T 1s70_B           73 GLTALHQACIDDNVDMVKFLVENG----ANINQP-----DN-EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP  142 (299)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCC----CCCCCC-----CC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            469999999999999999999953    444432     22 589999999999999999999999996421111000  


Q ss_pred             --------------------C--------------------------CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 003109          669 --------------------I--------------------------FPPNLAGPGGITPLHLAACTSDSDDIIDALTND  702 (847)
Q Consensus       669 --------------------l--------------------------~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~  702 (847)
                                          .                          ......+..|.||||+||.. |..+++++|+++
T Consensus       143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~  221 (299)
T 1s70_B          143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK-GYTEVLKLLIQA  221 (299)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH-TCHHHHHHHHTT
T ss_pred             HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHC-CcHHHHHHHHHc
Confidence                                0                          01223567899999999986 677899999987


Q ss_pred             CCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCccccccC
Q 003109          703 PQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG  755 (847)
Q Consensus       703 p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~----~~~~v~~~i~  755 (847)
                            ++++|.+|..|.||||+|+.+|+.+++++|++++++.    ..|+--+.+.
T Consensus       222 ------g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          222 ------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             ------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             ------CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence                  5789999999999999999999999999999998875    2455555554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.79  E-value=3.8e-19  Score=171.03  Aligned_cols=111  Identities=16%  Similarity=0.139  Sum_probs=96.0

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+.+|+.++++.||+ .    .+++..     +. .|+||||+|++.|+.++|++|+++|+           
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~----~~~~~~-----d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga-----------  100 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-D----RDVDAV-----DE-NGRTALLFVAGLGSDKCVRLLAEAGA-----------  100 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-T----SCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-c----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence            56799999999999999999998 2    334332     22 59999999999999999999999998           


Q ss_pred             CCCCCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcC
Q 003109          670 FPPNLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN  730 (847)
Q Consensus       670 ~d~na~d-~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G  730 (847)
                       ++|.++ ..|+||||+|+.. +..+++++|+++      +++++.+|.+|+||||+|+..+
T Consensus       101 -~~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          101 -DLDHRDMRGGLTALHMAAGY-VRPEVVEALVEL------GADIEVEDERGLTALELAREIL  154 (183)
T ss_dssp             -CTTCCCSSSSCCHHHHHHHT-TCHHHHHHHHHH------TCCTTCCCTTSCCHHHHHHHHH
T ss_pred             -CCCcCCCCCCCCHHHHHHhc-CcHHHHHHHHHc------CCCCcCCCCCCCCHHHHHHHhc
Confidence             578887 8999999999985 678899999987      5789999999999999998763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.79  E-value=2.9e-19  Score=175.69  Aligned_cols=128  Identities=5%  Similarity=-0.114  Sum_probs=107.8

Q ss_pred             hhhHHHHHHHhcCch----hHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCC------HHHHHHHHHcCCC
Q 003109          590 RFKFLLVFSVDRGCC----ALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC------RRMVDLLIHYSLT  659 (847)
Q Consensus       590 R~k~LL~FAvdrGw~----AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~------~eIVeLLL~~GA~  659 (847)
                      ..++|||+|+.+|+.    +++++||+.    |++++..     +. .|+||||+|+..++      .+||++||++|+ 
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~----Gadvn~~-----d~-~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga-  105 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISMFLINK----GADIKSR-----TK-EGTTLFFPLFQGGGNDITGTTELCKIFLEKGA-  105 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHHHHHHT----TCCSSCC-----CT-TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred             CCCCHHHHHHHcCCcchHHHHHHHHHHC----CCCCCCC-----CC-CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC-
Confidence            356999999999975    488888885    4555543     22 59999999999987      689999999999 


Q ss_pred             CCCCCCCCcCCCCCCCCCCCC-hHHHHHHhcCC----cHHHHHHHhC-CCCCCCCCCCCccCCCCCCCHHHHHHHcCCHH
Q 003109          660 SSNDTPQKYIFPPNLAGPGGI-TPLHLAACTSD----SDDIIDALTN-DPQEIGPSSWNSILDASGHSPYSYALMKNNHA  733 (847)
Q Consensus       660 ~~~~s~~~~l~d~na~d~~G~-TPLHlAA~~~g----~e~VveLLL~-~p~~vGagA~vnarD~~G~TPLHyAa~~G~~e  733 (847)
                                 ++|++|..|. ||||+|+..+.    ..+++++|++ +      ||++|++|..|+||||||+..|+.+
T Consensus       106 -----------din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~------gad~~~~d~~G~TpL~~A~~~~~~~  168 (186)
T 3t8k_A          106 -----------DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS------GLQLLIKDKWGLTALEFVKRCQKPI  168 (186)
T ss_dssp             -----------CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST------TCCTTCCCTTSCCHHHHHHTTTCHH
T ss_pred             -----------CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc------CCCCcccCCCCCCHHHHHHHcCCHH
Confidence                       6799999999 99999998322    2458999998 6      6789999999999999999999999


Q ss_pred             HHHHHHHhhccc
Q 003109          734 YNKLVARKLADR  745 (847)
Q Consensus       734 iIeLLl~K~a~~  745 (847)
                      ++++|++.+.+.
T Consensus       169 ~v~~L~~~~~~~  180 (186)
T 3t8k_A          169 ALKMMEDYIKKY  180 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999876554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.78  E-value=3.1e-18  Score=175.67  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=107.9

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC------
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDT------  664 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s------  664 (847)
                      ..++||+|+..|+.++++.|++..    .+++..     +. .|+||||+|++.|+.++|++|+++|++....+      
T Consensus        91 g~t~L~~A~~~g~~~iv~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~  160 (351)
T 3utm_A           91 GLVPLHNACSYGHYEVTELLLKHG----ACVNAM-----DL-WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA  160 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence            458999999999999999998853    333322     22 48899999999999999999999888531100      


Q ss_pred             ----------------------------------------------------C-------C-------------CcCCCC
Q 003109          665 ----------------------------------------------------P-------Q-------------KYIFPP  672 (847)
Q Consensus       665 ----------------------------------------------------~-------~-------------~~l~d~  672 (847)
                                                                          .       .             ....++
T Consensus       161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~  240 (351)
T 3utm_A          161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV  240 (351)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT
T ss_pred             hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc
Confidence                                                                0       0             012367


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |.++..|.||||+|+.. +..+++++|+++      ++++|.+|..|+||||+|+.+|+.+++++|++++++.
T Consensus       241 ~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  306 (351)
T 3utm_A          241 NEKNKDFMTPLHVAAER-AHNDVMEVLHKH------GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP  306 (351)
T ss_dssp             TCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCcCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            88899999999999985 677899999987      5789999999999999999999999999999988875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.78  E-value=2.3e-19  Score=179.95  Aligned_cols=126  Identities=19%  Similarity=0.134  Sum_probs=106.5

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++||+|+..|+.++++.||+..    .+++..     +. .|+||||+|++.|+.+||++||++|+            
T Consensus        37 ~~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga------------   94 (239)
T 1ycs_B           37 PLALLLDSSLEGEFDLVQRIIYEV----DDPSLP-----ND-EGITALHNAVCAGHTEIVKFLVQFGV------------   94 (239)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTSTT----SSCCCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHHTC------------
T ss_pred             hhHHHHHHHHcCCHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            468999999999999999998753    344432     22 58899999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCC-CHHHHH--HHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGH-SPYSYA--LMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~-TPLHyA--a~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.+|..|+||||+||.. ++.+++++|+++      +++++.+|..|. ||||+|  +.+|+.+++++|+.++++.
T Consensus        95 ~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~  165 (239)
T 1ycs_B           95 NVNAADSDGWTPLHCAASC-NNVQVCKFLVES------GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM  165 (239)
T ss_dssp             CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred             CCCccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcc
Confidence            5788999999999999974 677899999987      578899998887 999999  7889999999999988876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.78  E-value=3.4e-19  Score=179.50  Aligned_cols=127  Identities=19%  Similarity=0.120  Sum_probs=111.4

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ...++||+|+..|+.++++.||+..    .+++..     +. .|+||||+|+..|+.+||++||++|+           
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga-----------   78 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEM----NDPSQP-----NE-EGITALHNAICGANYSIVDFLITAGA-----------   78 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHS----SCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC-----------
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHCCC-----------
Confidence            3468999999999999999999863    344432     22 58999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCC-CCCCCHHHHH--HHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD-ASGHSPYSYA--LMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD-~~G~TPLHyA--a~~G~~eiIeLLl~K~a~~  745 (847)
                       ++|.+|..|.||||+||.. +..+++++|+++      +++++.+| .+|+||||+|  +..|+.+++++|++++++.
T Consensus        79 -~~n~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~------ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~  149 (229)
T 2vge_A           79 -NVNSPDSHGWTPLHCAASC-NDTVICMALVQH------GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM  149 (229)
T ss_dssp             -CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTT------TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred             -CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence             6789999999999999985 678899999987      57899997 5999999999  9999999999999998775

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.78  E-value=2.1e-18  Score=169.41  Aligned_cols=127  Identities=19%  Similarity=0.133  Sum_probs=109.6

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++||+|+..|+.++++.|++..   ..+.+..     +. .|.||||+|++.|+.+++++|+++|+            
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~---~~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------  135 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNG---QMDVNCQ-----DD-GGWTPMIWATEYKHVDLVKLLLSKGS------------  135 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTT---CCCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCC---CCCcccC-----CC-CCCCHHHHHHHcCCHHHHHHHHHCCC------------
Confidence            358999999999999999999853   2333322     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +++.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus       136 ~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          136 DINIRDNEENICLHWAAFS-GCVDIAEILLAA------KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             CTTCCCTTSCCHHHHHHHH-CCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             CCCccCCCCCCHHHHHHHC-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence            5788999999999999986 677899999987      5789999999999999999999999999999988764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.78  E-value=1.6e-19  Score=177.60  Aligned_cols=126  Identities=20%  Similarity=0.172  Sum_probs=103.6

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCcC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHY-SLTSSNDTPQKYI  669 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~-GA~~~~~s~~~~l  669 (847)
                      ..++||+|+.+|+.++++.||+..    .+++..     +. .|+||||+||..|+.++|++||++ |+           
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~-----------  131 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNR----VGVNGL-----DK-AGSTALYWACHGGHKDIVEMLFTQPNI-----------  131 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHTTSTTC-----------
T ss_pred             cccccccccccCcHHHHHHHHhCC----CCcccc-----CC-CCCCHHHHHHHcCCHHHHHHHHcCCCC-----------
Confidence            358999999999999999999853    444432     22 589999999999999999999998 87           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                       ++|.+|..|.||||+||.. +..+++++|+++      ||+++.+|.+|+||||+|+..|+.+++++|+.+++.+
T Consensus       132 -~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          132 -ELNQQNKLGDTALHAAAWK-GYADIVQLLLAK------GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             -CCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHH------TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             -CccccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence             6789999999999999985 678899999997      5789999999999999999999999999999887776

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.78  E-value=1.6e-18  Score=169.71  Aligned_cols=132  Identities=20%  Similarity=0.173  Sum_probs=79.8

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      +++||+|+.+|+.++++.|++.+...+.+++..     +. .|+||||+|+..|+.++|++|+++|+            +
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   71 (241)
T 1k1a_A           10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-----NN-LRQTPLHLAVITTLPSVVRLLVTAGA------------S   71 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-----cc-cCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            477777777777777777777655545444433     22 47777777777777777777777776            3


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      ++.++..|.||||+|+.. +..+++++|++....  .+.+++.+|..|.||||+|+..|+.+++++|++++.+
T Consensus        72 ~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  141 (241)
T 1k1a_A           72 PMALDRHGQTAAHLACEH-RSPTCLRALLDSAAP--GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD  141 (241)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCT--TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             ccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC--ccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            455555566666666553 444555555554110  0124555555666666666666666666655555443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.77  E-value=4.2e-19  Score=177.96  Aligned_cols=125  Identities=19%  Similarity=0.108  Sum_probs=87.1

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++||.|+..|..++++.|++...+    ++.      .. .|.||||+|++.|+.++|++||++|+            
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~----~~~------~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~------------   61 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMR----VKF------NP-LPLALLLDSSLEGEFDLVQRIIYEVD------------   61 (239)
T ss_dssp             -------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS------------
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCC----ccc------Cc-hhhHHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            46899999999999999999997543    221      12 37899999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.+|..|.||||+||.. |+.+++++|+++      ++++|.+|.+|+||||+|+.+|+.+++++|++++++.
T Consensus        62 ~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~------ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  129 (239)
T 1ycs_B           62 DPSLPNDEGITALHNAVCA-GHTEIVKFLVQF------GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV  129 (239)
T ss_dssp             SCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHH------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            6789999999999999985 678899999987      5789999999999999999999999999999998876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.77  E-value=1.2e-18  Score=175.11  Aligned_cols=123  Identities=15%  Similarity=0.145  Sum_probs=107.6

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++..    .+++..     +. .|+||||+|++.|+.++|++||++|+            
T Consensus       124 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga------------  181 (253)
T 1yyh_A          124 GTTPLILAARLAVEGMLEDLINSH----ADVNAV-----DD-LGKSALHWAAAVNNVDAAVVLLKNGA------------  181 (253)
T ss_dssp             CCCHHHHHHHHTCSSHHHHHHHTT----CCTTCB-----CT-TSCBHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred             CCcHHHHHHHcChHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            469999999999999999999953    444432     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                      ++|.++..|.||||+|+.. +..+++++|+++      +|+++.+|..|.||||+|+.+||.+++++|...-
T Consensus       182 ~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          182 NKDMQNNREETPLFLAARE-GSYETAKVLLDH------FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             CCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHc------CCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            5789999999999999985 677899999998      5789999999999999999999999999998653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.77  E-value=9.8e-19  Score=176.83  Aligned_cols=125  Identities=14%  Similarity=0.134  Sum_probs=108.0

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ...++||+|+.+|+.++++.||+ .    .+++..     +. .|+||||+|+..|+.++|++||++|+           
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~----~~~~~~-----d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga-----------  101 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-D----RDVDAV-----DE-NGRTALLFVAGLGSDKCVRLLAEAGA-----------  101 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-T----CCTTCB-----CT-TSCBHHHHHHHHTCHHHHHHHHHTTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-C----CCCCCc-----CC-CCCCHHHHHHHCCCHHHHHHHHHcCC-----------
Confidence            46799999999999999999998 3    334322     22 59999999999999999999999998           


Q ss_pred             CCCCCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHH----------------HcCCH
Q 003109          670 FPPNLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYAL----------------MKNNH  732 (847)
Q Consensus       670 ~d~na~d-~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa----------------~~G~~  732 (847)
                       ++|.++ ..|+||||+||.. ++.+++++|+++      +|+++.+|..|.||||+|+                ..|+.
T Consensus       102 -~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~  173 (244)
T 3ui2_A          102 -DLDHRDMRGGLTALHMAAGY-VRPEVVEALVEL------GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE  173 (244)
T ss_dssp             -CTTCCCSSSCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHH
T ss_pred             -CCCcCCCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChH
Confidence             578887 8899999999985 778899999998      5789999999999999988                67999


Q ss_pred             HHHHHHHHhhcc
Q 003109          733 AYNKLVARKLAD  744 (847)
Q Consensus       733 eiIeLLl~K~a~  744 (847)
                      +++++|..+..+
T Consensus       174 ~iv~~L~~~~~~  185 (244)
T 3ui2_A          174 KVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHHEE
T ss_pred             HHHHHHHHhccc
Confidence            999999987554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.77  E-value=7.8e-19  Score=181.11  Aligned_cols=123  Identities=14%  Similarity=0.135  Sum_probs=84.4

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      +++||+|+..|+.++++.|++..    .+++..        +|+||||+|++.|+.++|++||++|+            +
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~--------~g~t~L~~A~~~g~~~~v~~Ll~~ga------------~   87 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLNAG----ALKNLL--------ENEFPLHQAATLEDTKIVKILLFSGL------------D   87 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----GGGSCC--------TTCCHHHHHTTSSSCHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCC----CCCCCC--------CCCCHHHHHHHcCCHHHHHHHHHCCC------------C
Confidence            46777777777777777777753    222211        36777777777777777777777776            4


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCC-CCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASG-HSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G-~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|.++..|+||||+|+.. +..+++++|+++      +++++.+|..| .||||+|+.+|+.+++++|++++++.
T Consensus        88 ~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~------ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           88 DSQFDDKGNTALYYAVDS-GNMQTVKLFVKK------NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHH------CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             CCCcCCCCCcHHHHHHHc-CCHHHHHHHHhc------CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            566777777777777763 556677777766      45677777777 67777777777777777777766543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.77  E-value=9.2e-19  Score=184.17  Aligned_cols=142  Identities=15%  Similarity=0.117  Sum_probs=112.7

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCC---------c--HHHHhhccCchHHHHHHHcC--CHHHHHHHHHc
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGL---------S--RESLEMLWEIQLLNRAVKMK--CRRMVDLLIHY  656 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~---------s--~~~~~~l~g~TpLH~AV~~g--~~eIVeLLL~~  656 (847)
                      ...++||+|+..|+.++++.|++.....+.+.+..         .  ........|.||||+|+..|  +.++|++||++
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            44689999999999999999999855433222100         0  00001225899999999999  99999999999


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHH
Q 003109          657 SLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNK  736 (847)
Q Consensus       657 GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIe  736 (847)
                      |+            ++|.+|..|.||||+||.. ++.+++++|+++.... .+.++|.+|..|+||||+|+.+|+.++++
T Consensus       163 ga------------~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  228 (364)
T 3ljn_A          163 GA------------SPTAKDKADETPLMRAMEF-RNREALDLMMDTVPSK-SSLRLDYANKQGNSHLHWAILINWEDVAM  228 (364)
T ss_dssp             TC------------CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCSCS-SSCCTTCCCTTCCCTTHHHHTTTCHHHHH
T ss_pred             CC------------CCcccCCCCCCHHHHHHHc-CCHHHHHHHHhccccc-ccccccccCCCCCcHHHHHHHcCCHHHHH
Confidence            98            6789999999999999985 7788999999872110 01239999999999999999999999999


Q ss_pred             HHHHhhccc
Q 003109          737 LVARKLADR  745 (847)
Q Consensus       737 LLl~K~a~~  745 (847)
                      +|++++++.
T Consensus       229 ~Ll~~gad~  237 (364)
T 3ljn_A          229 RFVEMGIDV  237 (364)
T ss_dssp             HHHTTTCCT
T ss_pred             HHHHcCCCC
Confidence            999998775

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.77  E-value=2.7e-18  Score=167.93  Aligned_cols=126  Identities=18%  Similarity=0.167  Sum_probs=110.1

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|++.|+.++|++|+++|+            
T Consensus        40 g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   97 (231)
T 3aji_A           40 SRTALHWACSAGHTEIVEFLLQLG----VPVNDK-----DD-AGWSPLHIAASAGXDEIVKALLVKGA------------   97 (231)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTT----CCSCCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHhC----CCCCCc-----CC-CCCCHHHHHHHcCHHHHHHHHHHcCC------------
Confidence            458999999999999999999863    344432     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +++.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus        98 ~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  165 (231)
T 3aji_A           98 HVNAVNQNGCTPLHYAASK-NRHEIAVMLLEG------GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST  165 (231)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence            5788899999999999985 677899999987      5679999999999999999999999999999987654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.76  E-value=2.1e-18  Score=168.04  Aligned_cols=128  Identities=17%  Similarity=0.095  Sum_probs=108.4

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++...+  ++....    .+. .|+||||+|++.|+.++|++|+++|+.          .
T Consensus        36 g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~----~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------~   98 (228)
T 2dzn_A           36 GRIPLHWSVSFQAHEITSFLLSKMEN--VNLDDY----PDD-SGWTPFHIACSVGNLEVVKSLYDRPLK----------P   98 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTCTT--CCGGGC----CCT-TSCCHHHHHHHHCCHHHHHHHHSSSSC----------C
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccc--cccccc----CCC-CCCCHHHHHHHcCCHHHHHHHHhCCCC----------c
Confidence            45899999999999999999996422  222210    112 589999999999999999999999842          1


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                      +++.++..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+..|+.+++++|++++
T Consensus        99 ~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A           99 DLNKITNQGVTCLHLAVGK-KWFEVSQFLIEN------GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  163 (228)
T ss_dssp             CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             ccccCCcCCCCHHHHHHHc-CCHhHHHHHHHc------CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            5788899999999999985 678899999987      5689999999999999999999999999999988

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.76  E-value=3.8e-18  Score=169.51  Aligned_cols=127  Identities=22%  Similarity=0.198  Sum_probs=110.8

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++|++|+.+|..++++.|++..    .+++..     ....|+||||+|++.|+.++|++|+++|+            
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------------   63 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGG----ANVNFQ-----EEEGGWTPLHNAVQMSREDIVELLLRHGA------------   63 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CTTTCCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcC----CCcccc-----cCCCCCcHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            468999999999999999999863    333322     12258999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +++.++..|.||||+|+.. +..+++++|+++      +++++.+|..|+||||+|+.+|+.+++++|++++++-
T Consensus        64 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  131 (285)
T 1wdy_A           64 DPVLRKKNGATPFLLAAIA-GSVKLLKLFLSK------GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV  131 (285)
T ss_dssp             CTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCcccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc
Confidence            5788999999999999985 677899999987      5679999999999999999999999999999987764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.76  E-value=5.5e-18  Score=176.43  Aligned_cols=144  Identities=19%  Similarity=0.079  Sum_probs=107.8

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQ----  666 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~----  666 (847)
                      ..++||.|+.+|+.++|++||+.+    ++++..     +...|+||||+||+.|+.+||++||++|++.......    
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~G----advn~~-----~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~   95 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGG----ANVNFQ-----EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP   95 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHT----CCTTCC-----CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCC----CCCCcc-----CCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCch
Confidence            368999999999999999999964    444422     2225899999999999999999999999964211110    


Q ss_pred             -----------------CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCC----CCCCccCCCCCCCHHHH
Q 003109          667 -----------------KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGP----SSWNSILDASGHSPYSY  725 (847)
Q Consensus       667 -----------------~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGa----gA~vnarD~~G~TPLHy  725 (847)
                                       ....++|.+|..|.||||+|+.. +..+++++|+++...+..    ..+.+..+..|.||||+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~-~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~  174 (337)
T 4g8k_A           96 FILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  174 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHH
T ss_pred             hHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHc-CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHH
Confidence                             12347889999999999999985 677899999987221110    11223456679999999


Q ss_pred             HHHcCCHHHHHHHHHh-hcc
Q 003109          726 ALMKNNHAYNKLVARK-LAD  744 (847)
Q Consensus       726 Aa~~G~~eiIeLLl~K-~a~  744 (847)
                      |+.+|+.+++++|+++ +++
T Consensus       175 A~~~g~~~~v~~LL~~~gad  194 (337)
T 4g8k_A          175 AAEKGHVEVLKILLDEMGAD  194 (337)
T ss_dssp             HHHHTCHHHHHHHHHHSCCC
T ss_pred             HHHCCCHHHHHHHHhccCCC
Confidence            9999999999999864 444

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.76  E-value=4.2e-18  Score=169.17  Aligned_cols=129  Identities=18%  Similarity=0.173  Sum_probs=111.8

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC----RRMVDLLIHYSLTSSNDTPQ  666 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~----~eIVeLLL~~GA~~~~~s~~  666 (847)
                      ..++||+|+.+|+.++++.|++.   .+.+++..     +. .|.||||+|+..++    .+|+++|+++|+        
T Consensus       148 g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~-----~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~--------  210 (285)
T 1wdy_A          148 GATALMDAAEKGHVEVLKILLDE---MGADVNAC-----DN-MGRNALIHALLSSDDSDVEAITHLLLDHGA--------  210 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCC-----CT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTC--------
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHh---cCCCCCcc-----CC-CCCCHHHHHHHccccchHHHHHHHHHHcCC--------
Confidence            45899999999999999999985   23444432     22 58999999999999    999999999998        


Q ss_pred             CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcccc
Q 003109          667 KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRR  746 (847)
Q Consensus       667 ~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~~  746 (847)
                          ++|.++..|.||||+|+.. +..+++++|++..     +++++.+|..|.||||+|+.+|+.+++++|++++++..
T Consensus       211 ----~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~-----g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          211 ----DVNVRGERGKTPLILAVEK-KHLGLVQRLLEQE-----HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             ----CSSCCCTTSCCHHHHHHHT-TCHHHHHHHHHSS-----SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             ----CCCCcCCCCCcHHHHHHHc-CCHHHHHHHHhcc-----CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence                6789999999999999985 6778999999831     56899999999999999999999999999999998863

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.76  E-value=1.3e-18  Score=171.87  Aligned_cols=133  Identities=18%  Similarity=0.099  Sum_probs=111.7

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+..|+.++++.||+.    +.+++..     +. .|+||||+|++.|+.++|++|+++|++.      .+.
T Consensus        44 ~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------~~~  107 (236)
T 1ikn_D           44 LQQTPLHLAVITNQPEIAEALLGA----GCDPELR-----DF-RGNTPLHLACEQGCLASVGVLTQSCTTP------HLH  107 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHCCCSC----CCCSCCC-----CT-TCCCHHHHHHHHTCHHHHHHHHHSTTTT------SSS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHhcccch------hHH
Confidence            346999999999999999999985    3444432     22 5899999999999999999999999731      111


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCC-CCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA-SGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~-~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ..++..+..|.||||+|+.. +..+++++|+++      +++++.+|. .|.||||+|+..|+.+++++|++++++.
T Consensus       108 ~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  177 (236)
T 1ikn_D          108 SILKATNYNGHTCLHLASIH-GYLGIVELLVSL------GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV  177 (236)
T ss_dssp             CGGGCCCTTCCCHHHHHHHT-TCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS
T ss_pred             HHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            13577889999999999985 678899999987      578999998 9999999999999999999999998775

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.76  E-value=4.1e-18  Score=163.22  Aligned_cols=128  Identities=16%  Similarity=0.034  Sum_probs=105.3

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|+..|+.++|++|++++..           
T Consensus        39 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~-----------   97 (201)
T 3hra_A           39 GNTPLNIAVHNNDIEIAKALIDRG----ADINLQ-----NS-ISDSPYLYAGAQGRTEILAYMLKHATP-----------   97 (201)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHHSCC-----------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHhccCc-----------
Confidence            458999999999999999999853    344322     22 488999999999999999999955431           


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCC-----HHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNN-----HAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~-----~eiIeLLl~K~a~~  745 (847)
                      +++.++..|.||||+|+.. +..+++++|+++    | .++++.+|..|+||||+|+..|+     .+++++|++++++.
T Consensus        98 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~----g-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~  171 (201)
T 3hra_A           98 DLNKHNRYGGNALIPAAEK-GHIDNVKLLLED----G-REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ  171 (201)
T ss_dssp             CTTCCCTTSCCSHHHHHHT-TCHHHHHHHHHH----C-CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT
T ss_pred             ccccccCCCCcHHHHHHHc-CCHHHHHHHHHc----C-CCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC
Confidence            5788899999999999985 677899999987    2 26789999999999999999988     89999999987764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.76  E-value=3.7e-18  Score=175.12  Aligned_cols=127  Identities=21%  Similarity=0.184  Sum_probs=111.0

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++|+.|+..|..+.++.||..   .+++.+..     +. .|.||||+|++.|+.++|++||++|+            
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~-----d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~------------   82 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTP---LNVNCHAS-----DG-RKSTPLHLAAGYNRVRIVQLLLQHGA------------   82 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCT---TTTTCCCS-----ST-TCCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             cchhHHHHHHcCCHHHHHHHHHh---cCCCcccC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            36899999999999999998874   23444322     22 48999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.++..|.||||+|+.. |+.+++++|+++      +++++.+|..|+||||+|+.+|+.+++++|++++++.
T Consensus        83 ~~~~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  150 (351)
T 3utm_A           83 DVHAKDKGGLVPLHNACSY-GHYEVTELLLKH------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP  150 (351)
T ss_dssp             CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCccCCCCCcHHHHHHHC-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            6789999999999999985 778899999998      5689999999999999999999999999999998775

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.76  E-value=4e-19  Score=183.34  Aligned_cols=117  Identities=18%  Similarity=0.150  Sum_probs=101.4

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++|++|+..++.++++.|++..    ++++..     +. .|+||||+||+.|+.++|++||++|+            
T Consensus       119 g~t~l~~a~~~~~~~~~~~Ll~~g----~~~n~~-----d~-~g~TpL~~A~~~g~~~~v~~Ll~~ga------------  176 (269)
T 4b93_B          119 QAVPLHLACQQGHFQVVKCLLDSN----AKPNKK-----DL-SGNTPLIYACSGGHHELVALLLQHGA------------  176 (269)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTT----CCSCCC-----CT-TCCCHHHHHHHTTCGGGHHHHHHTTC------------
T ss_pred             CCCccccccccChHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHCCCHHHHHHHHHCCC------------
Confidence            458999999999999999999853    444433     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLV  738 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLL  738 (847)
                      ++|.++..|.||||+||.. |..+++++|+++      ||++|++|.+|+||||||+++|+  ++++|
T Consensus       177 dvn~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~------Gad~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          177 SINASNNKGNTALHEAVIE-KHVFVVELLLLH------GASVQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             CTTCBCTTSCBHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             CCCccccCCCcHHHHHHHc-CCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            6799999999999999985 778899999998      57899999999999999998875  55554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.75  E-value=4.9e-18  Score=176.84  Aligned_cols=128  Identities=18%  Similarity=0.175  Sum_probs=106.8

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC----RRMVDLLIHYSLTSSNDTPQ  666 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~----~eIVeLLL~~GA~~~~~s~~  666 (847)
                      ..++||+|+.+|+.+++++||+.   .+++++..     +. .|.|+||.++..++    ..|+++|+++|+        
T Consensus       168 g~T~L~~A~~~g~~~~v~~LL~~---~gad~n~~-----d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~ga--------  230 (337)
T 4g8k_A          168 GATALMDAAEKGHVEVLKILLDE---MGADVNAC-----DN-MGRNALIHALLSSDDSDVEAITHLLLDHGA--------  230 (337)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHH---SCCCTTCC-----CT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTC--------
T ss_pred             CCcHHHHHHHCCCHHHHHHHHhc---cCCCcCcc-----CC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCC--------
Confidence            46899999999999999999975   34555433     22 48899998876554    468999999998        


Q ss_pred             CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          667 KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       667 ~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                          ++|.+|..|+||||+||.. +..++++.|+...     ++++|.+|.+|+||||+|+++|+.++|++|++++++.
T Consensus       231 ----d~n~~d~~g~t~L~~a~~~-~~~~~v~~Ll~~~-----~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          231 ----DVNVRGERGKTPLILAVEK-KHLGLVQRLLEQE-----HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  299 (337)
T ss_dssp             ----CTTCCCGGGCCHHHHHHHT-TCHHHHHHHHTST-----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred             ----CCCCcCCCCCCHHHHHHHh-hhhHHHHHHHHhc-----CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence                6789999999999999985 6677888888752     5789999999999999999999999999999998864

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.75  E-value=5.3e-18  Score=182.34  Aligned_cols=125  Identities=17%  Similarity=0.127  Sum_probs=75.4

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      +++||+|+.+|+.++++.|++..    .+.+..     +. .|.||||+|++.|+.+++++|+++|+            +
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~----~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~  303 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQ----ANGNLG-----NK-SGLTPLHLVAQEGHVPVADVLIKHGV------------M  303 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTT----CCTTCC-----CT-TCCCHHHHHHHHTCHHHHHHHHHHTC------------C
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHhCCc------------c
Confidence            35666666666666666666532    222211     11 35666666666666666666666665            4


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|.++..|.||||+|+.. +..+++++|+++      ++++|.+|..|+||||+|+.+|+.+++++|++++++.
T Consensus       304 ~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~  370 (437)
T 1n11_A          304 VDATTRMGYTPLHVASHY-GNIKLVKFLLQH------QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP  370 (437)
T ss_dssp             TTCCCSSCCCHHHHHHHS-SCSHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             CCCCCCCCCCHHHHHHHc-CcHHHHHHHHhc------CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC
Confidence            566666666666666664 444566666665      3556666666666666666666666666666666554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.75  E-value=3.8e-18  Score=179.52  Aligned_cols=131  Identities=18%  Similarity=0.113  Sum_probs=110.1

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCc
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM---KCRRMVDLLIHYSLTSSNDTPQKY  668 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~---g~~eIVeLLL~~GA~~~~~s~~~~  668 (847)
                      ..+|+.|+..|....++.||...    .+++...........|.||||+||+.   |+.++|++||++|+          
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g----~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga----------  217 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANG----QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG----------  217 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTT----CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS----------
T ss_pred             HHHHhhhhhccCHHHHHHHHhcC----CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC----------
Confidence            36799999999999999998743    34432100000122589999999997   99999999999998          


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          669 IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       669 l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                        ++|.+|..|.||||+||.. +..+++++|+++      ||+++++|.+|.||||+|+..|+.+++++|++++++.
T Consensus       218 --dvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~------gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          218 --HLDAKAADGNTALHYAALY-NQPDCLKLLLKG------RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             --CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             --CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence              6789999999999999985 678899999997      5789999999999999999999999999999999874

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.74  E-value=9.7e-18  Score=170.21  Aligned_cols=116  Identities=18%  Similarity=0.164  Sum_probs=89.7

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++|++|+..|+.++++.||+..    .+++..     +. .|.||||+||..|+.++|++||++|+            
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga------------   97 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERG----ADINYA-----NV-DGLTALHQACIDDNVDMVKFLVENGA------------   97 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHC----CCTTCB-----CT-TCCBHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcC----CCCccc-----CC-CCCCHHHHHHHcCCHHHHHHHHHCCC------------
Confidence            368999999999999999999963    344432     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHH
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYN  735 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiI  735 (847)
                      ++|.+|..|+||||+|+.. |+.+++++|+++      +++++.+|..|.||||+|+..|+.+++
T Consensus        98 ~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~  155 (299)
T 1s70_B           98 NINQPDNEGWIPLHAAASC-GYLDIAEYLISQ------GAHVGAVNSEGDTPLDIAEEEAMEELL  155 (299)
T ss_dssp             CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhC------CCCCCCcCCCCCCHHHHHHhcchHHHH
Confidence            5788999999999999985 677899999987      455666665544444444333333333

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.74  E-value=1.3e-17  Score=163.64  Aligned_cols=126  Identities=20%  Similarity=0.162  Sum_probs=93.8

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++..    .+++..     +. .|+||||+|++.|+.++|++|+++|+            
T Consensus        11 g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   68 (237)
T 3b7b_A           11 KRSPLHAAAEAGHVDICHMLVQAG----ANIDTC-----SE-DQRTPLMEAAENNHLEAVKYLIKAGA------------   68 (237)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHTTTC------------
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcC----CCcCcc-----CC-CCCCHHHHHHHhCCHHHHHHHHhCCC------------
Confidence            468999999999999999999853    344332     12 48899999999999999999999987            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      +++.++..|.||||+|+.. +..+++++|++.    | .++++.+|..|.||||+|+..|+.+++++|++++++
T Consensus        69 ~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~----~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  136 (237)
T 3b7b_A           69 LVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSN----G-QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD  136 (237)
T ss_dssp             CCCCCCTTSCCHHHHHHHT-TCHHHHHHHHTT----T-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhC----C-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            4566677777777777764 556677777766    2 145677777777777777777777777777776654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.74  E-value=1.5e-17  Score=171.16  Aligned_cols=124  Identities=17%  Similarity=0.051  Sum_probs=106.2

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++..    .+.+..      . .|.||||+|++.|+.++|++|+++|+            
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~------~-~g~t~L~~A~~~g~~~~v~~Ll~~g~------------  181 (285)
T 3d9h_A          125 WHTPLFNACVSGSWDCVNLLLQHG----ASVQPE------S-DLASPIHEAARRGHVECVNSLIAYGG------------  181 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTT----CCSSCS------C-TTSCHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred             CCCHHHHHHHcCHHHHHHHHHHCC----CCCCCC------C-CCCCHHHHHHHcCCHHHHHHHHHCCC------------
Confidence            458999999999999999999853    333211      1 38899999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.++..|.||||+|+.. +..+++++|++.      ++++|. |..|.||||+|+.+|+.+++++|++++++.
T Consensus       182 ~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  248 (285)
T 3d9h_A          182 NIDHKISHLGTPLYLACEN-QQRACVKKLLES------GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT  248 (285)
T ss_dssp             CTTCCBTTTBCHHHHHHHT-TCHHHHHHHHHT------TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHC------CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            5788999999999999985 678899999987      467774 899999999999999999999999998774

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.74  E-value=4.2e-18  Score=182.13  Aligned_cols=133  Identities=18%  Similarity=0.144  Sum_probs=109.0

Q ss_pred             hhhHHHHHHHhcC---chhHHHHHHHHHHhccccCCCCcHHH--HhhccCchHHHHHHHcCCHHHHHHHHHcC-CCCCCC
Q 003109          590 RFKFLLVFSVDRG---CCALVKAILDILVEGNLSMDGLSRES--LEMLWEIQLLNRAVKMKCRRMVDLLIHYS-LTSSND  663 (847)
Q Consensus       590 R~k~LL~FAvdrG---w~AVVK~LLd~l~~g~vdid~~s~~~--~~~l~g~TpLH~AV~~g~~eIVeLLL~~G-A~~~~~  663 (847)
                      ...++||+|+..|   +.+++++|++...+    ++......  .....|.||||+|++.|+.++|++||+++ +     
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~----~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-----  304 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAK----VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS-----  304 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCC----SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC-----
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCC----cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC-----
Confidence            3468999999988   89999999997533    32210000  01125899999999999999999999886 5     


Q ss_pred             CCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 003109          664 TPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA  743 (847)
Q Consensus       664 s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a  743 (847)
                             ++|.+|..|.||||+||.. |..+++++|+++      ||+++.+|..|.||||+|+.+||.+++++|+++.+
T Consensus       305 -------~~n~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~------gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          305 -------NKDKQDEDGKTPIMLAAQE-GRIEVVMYLIQQ------GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             -------CTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             -------CccCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence                   6789999999999999985 678899999998      57899999999999999999999999999999887


Q ss_pred             cc
Q 003109          744 DR  745 (847)
Q Consensus       744 ~~  745 (847)
                      ++
T Consensus       371 ~~  372 (373)
T 2fo1_E          371 ER  372 (373)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.73  E-value=2.5e-17  Score=160.00  Aligned_cols=126  Identities=17%  Similarity=0.148  Sum_probs=92.1

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++||+|+..|+.++++.|++..    .+.+..     +. .|.||||+|++.|+.+++++|+++|+            
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~------------  133 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYG----ADPSLI-----DG-EGCSCIHLAAQFGHTSIVAYLIAKGQ------------  133 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcC----CCCccc-----CC-CCCCHHHHHHHcCHHHHHHHHHhcCC------------
Confidence            458999999999999999999853    333322     22 48899999999999999999999988            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCC-CCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA-SGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~-~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      +++.++..|.||||+|+..++..+++++|+..      +++++.++. .|.||||+|+.+|+.+++++|++++++
T Consensus       134 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  202 (240)
T 3eu9_A          134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF------NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN  202 (240)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT------TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             CccccCCCCCcHHHHHHHhCChHHHHHHHHhc------CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45666677777777777555555666766665      345666665 677777777777777777777766555

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.73  E-value=1.5e-17  Score=149.42  Aligned_cols=94  Identities=22%  Similarity=0.110  Sum_probs=86.0

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.|+||+|++.|+.++|++|+++|+            ++|.++..|+||||+||.. +..+++++|+++      ++++
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~------------~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~   66 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGE------------DVNRTLEGGRKPLHYAADC-GQLEILEFLLLK------GADI   66 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTC------------CTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTT------TCCT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCC------------CcCccCCCCCcHHHHHHHc-CCHHHHHHHHHc------CCCC
Confidence            37899999999999999999999998            5788999999999999985 677899999987      5789


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |.+|..|+||||+|+.+|+.+++++|++++++.
T Consensus        67 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~   99 (123)
T 3aaa_C           67 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK   99 (123)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999987764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.73  E-value=3.3e-17  Score=168.72  Aligned_cols=125  Identities=18%  Similarity=0.039  Sum_probs=106.9

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|+..|+.++|++|+++|++           
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------  150 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHG----AQVNGV-----TA-DWHTPLFNACVSGSWDCVNLLLQHGAS-----------  150 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTT----CCSSCC-----CT-TCCCHHHHHHHHTCHHHHHHHHHTTCC-----------
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcCHHHHHHHHHHCCCC-----------
Confidence            469999999999999999999963    444422     22 589999999999999999999999983           


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                       ++. +..|.||||+|+.. +..+++++|+++      +++++.+|.+|.||||+|+.+|+.+++++|++++++.
T Consensus       151 -~~~-~~~g~t~L~~A~~~-g~~~~v~~Ll~~------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  216 (285)
T 3d9h_A          151 -VQP-ESDLASPIHEAARR-GHVECVNSLIAY------GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV  216 (285)
T ss_dssp             -SSC-SCTTSCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             -CCC-CCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC
Confidence             343 33599999999986 677899999987      5689999999999999999999999999999987764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.73  E-value=2e-17  Score=180.28  Aligned_cols=127  Identities=15%  Similarity=0.083  Sum_probs=109.2

Q ss_pred             hHHHHHHHhc-CchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          592 KFLLVFSVDR-GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       592 k~LL~FAvdr-Gw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .++||+|+.. |+.++++.||+..    ++++....    ...|.||||+||..|+.++|++||++|+            
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~G----advn~~~~----~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga------------  259 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHG----ADVNWVNG----GQDNATPLIQATAANSLLACEFLLQNGA------------  259 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTT----CCTTCCCT----TTTCCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcC----CCCCcccc----ccCCCCHHHHHHHCCCHHHHHHHHHcCC------------
Confidence            4799999999 9999999999853    44443310    1258999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.+|..|.||||+|+.. ++.+++++|+++      +|+++++|.+|.||||+|+..|+.+++++|+......
T Consensus       260 dvn~~d~~G~TpLh~A~~~-g~~~~v~~LL~~------Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~  327 (368)
T 3jue_A          260 NVNQADSAGRGPLHHATIL-GHTGLACLFLKR------GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE  327 (368)
T ss_dssp             CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred             CCCCCCCCCCCHHHHHHHc-CcHHHHHHHHHC------cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            6789999999999999986 678899999998      5789999999999999999999999999999876443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.72  E-value=1.9e-17  Score=178.02  Aligned_cols=126  Identities=16%  Similarity=0.163  Sum_probs=110.3

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+..|+.++++.|++..    ++++..     +. .|+||||+|++.|+.++|++|+++|+           
T Consensus       277 ~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga-----------  335 (437)
T 1n11_A          277 SGLTPLHLVAQEGHVPVADVLIKHG----VMVDAT-----TR-MGYTPLHVASHYGNIKLVKFLLQHQA-----------  335 (437)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHT----CCTTCC-----CS-SCCCHHHHHHHSSCSHHHHHHHHTTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCC----ccCCCC-----CC-CCCCHHHHHHHcCcHHHHHHHHhcCC-----------
Confidence            3468999999999999999999964    344422     22 58999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                       ++|.++..|.||||+|+.. ++.+++++|+++      ||+++.+|.+|.||||+|+.+|+.+++++|......
T Consensus       336 -d~n~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~------ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~~  402 (437)
T 1n11_A          336 -DVNAKTKLGYSPLHQAAQQ-GHTDIVTLLLKN------GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE  402 (437)
T ss_dssp             -CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCC
T ss_pred             -CCCCCCCCCCCHHHHHHHC-ChHHHHHHHHHC------cCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcccc
Confidence             6799999999999999985 778899999998      578999999999999999999999999999765544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.72  E-value=1.7e-17  Score=151.48  Aligned_cols=94  Identities=22%  Similarity=0.189  Sum_probs=87.0

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|+||||+|++.|+.++|++||++|+            ++|.+|..|.||||+|+.. +..+++++|+++      ++++
T Consensus         9 ~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~   69 (137)
T 3c5r_A            9 RGETLLHIASIKGDIPSVEYLLQNGS------------DPNVKDHAGWTPLHEACNH-GHLKVVELLLQH------KALV   69 (137)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTC------------CSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC------------CCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCcc
Confidence            58999999999999999999999998            5788999999999999985 678899999987      5689


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +.+|..|+||||+|+..|+.+++++|++++++.
T Consensus        70 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  102 (137)
T 3c5r_A           70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR  102 (137)
T ss_dssp             TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999988775

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.71  E-value=1.1e-17  Score=148.25  Aligned_cols=94  Identities=27%  Similarity=0.226  Sum_probs=87.0

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|+||||+|++.|+.+++++|+++|+            ++|.+|..|.||||+|+.. +..+++++|+++      ++++
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~   68 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGA------------DVNARSKDGNTPLHLAAKN-GHAEIVKLLLAK------GADV   68 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTC------------CSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTT------TCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC------------CCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHc------CCCC
Confidence            58999999999999999999999998            5788999999999999985 678899999987      5689


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +.+|..|+||||+|+..|+.+++++|++++++-
T Consensus        69 ~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  101 (115)
T 2l6b_A           69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV  101 (115)
T ss_dssp             TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999998875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.71  E-value=6.3e-18  Score=177.92  Aligned_cols=135  Identities=16%  Similarity=-0.016  Sum_probs=108.3

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC---RRMVDLLIHYSLTSSNDTPQ  666 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~---~eIVeLLL~~GA~~~~~s~~  666 (847)
                      ..++|||+|+..|+.+++++||+..    ++++..     +. .|+||||+|+++|+   .++++.||+++..       
T Consensus       130 ~g~TpLh~Aa~~g~~~~v~~Ll~~G----ad~n~~-----d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~-------  192 (327)
T 1sw6_A          130 HGNTPLHWLTSIANLELVKHLVKHG----SNRLYG-----DN-MGESCLVKAVKSVNNYDSGTFEALLDYLYP-------  192 (327)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTT----CCTTBC-----CT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGG-------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHhcccccHHHHHHHHHhhhc-------
Confidence            3569999999999999999999963    444433     22 59999999999998   7889999998731       


Q ss_pred             CcCCCCCCCCCCCChHHHHHHhc---CCcHHHHHHHhCCCCCC----------------CCC------------------
Q 003109          667 KYIFPPNLAGPGGITPLHLAACT---SDSDDIIDALTNDPQEI----------------GPS------------------  709 (847)
Q Consensus       667 ~~l~d~na~d~~G~TPLHlAA~~---~g~e~VveLLL~~p~~v----------------Gag------------------  709 (847)
                          ++|.+|..|+||||+||..   .+..+++++|++....+                |+.                  
T Consensus       193 ----~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~  268 (327)
T 1sw6_A          193 ----CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL  268 (327)
T ss_dssp             ----GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSH
T ss_pred             ----cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHH
Confidence                5789999999999999972   36778999887641000                000                  


Q ss_pred             -----CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          710 -----SWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       710 -----A~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                           .++|.+|.+|+||||+|+++|+.+++++|++++++.
T Consensus       269 ~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~  309 (327)
T 1sw6_A          269 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP  309 (327)
T ss_dssp             HHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred             HHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                 048899999999999999999999999999998875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.71  E-value=1.4e-17  Score=171.69  Aligned_cols=124  Identities=11%  Similarity=-0.004  Sum_probs=93.2

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccC-chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWE-IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g-~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      .+++||+|+..|+.++++.|++...    +++..     +. .| .||||+|+..|+.++|++|+++|++          
T Consensus        95 g~t~L~~A~~~g~~~~v~~Ll~~ga----~~~~~-----~~-~g~~t~L~~A~~~~~~~~v~~Ll~~g~~----------  154 (285)
T 3kea_A           95 GNTALYYAVDSGNMQTVKLFVKKNW----RLMFY-----GK-TGWKTSFYHAVMLNDVSIVSYFLSEIPS----------  154 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCG----GGGGC-----SS-SGGGSHHHHHHHTTCHHHHHHHHTTSCT----------
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCC----CCCcc-----CC-CCCCCHHHHHHHcCCHHHHHHHHhCCCc----------
Confidence            3578888888888888888888632    22211     22 34 6888888888888888888888763          


Q ss_pred             CCCCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCH-HHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSP-YSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~-~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TP-LHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                          ..+. .|.||||+|+.. +..+++++|+++      |+++|.+|..|+|| ||+|+.+|+.+++++|++++++.
T Consensus       155 ----~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~  221 (285)
T 3kea_A          155 ----TFDLAILLSCIHITIKN-GHVDMMILLLDY------MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI  221 (285)
T ss_dssp             ----TCCCSTHHHHHHHHHHT-TCHHHHHHHHHH------HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCS
T ss_pred             ----cccccCCccHHHHHHHc-ChHHHHHHHHHc------CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                1222 788888888874 667788888877      56788888888887 88888888888888888887776

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.71  E-value=6.2e-17  Score=157.20  Aligned_cols=126  Identities=15%  Similarity=0.108  Sum_probs=106.4

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCcC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC-RRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~-~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..++||+|+.+|+.++++.|++..    .+++..     +. .|.||||+|+..++ .+++++|+++|+           
T Consensus       109 g~t~l~~A~~~~~~~~~~~Ll~~~----~~~~~~-----~~-~g~t~l~~a~~~~~~~~~~~~L~~~~~-----------  167 (240)
T 3eu9_A          109 GCSCIHLAAQFGHTSIVAYLIAKG----QDVDMM-----DQ-NGMTPLMWAAYRTHSVDPTRLLLTFNV-----------  167 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHHCCSSTTHHHHHHTTC-----------
T ss_pred             CCCHHHHHHHcCHHHHHHHHHhcC----CCcccc-----CC-CCCcHHHHHHHhCChHHHHHHHHhcCC-----------
Confidence            358999999999999999999953    344322     22 58999999997666 899999999998           


Q ss_pred             CCCCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d~-~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                       +++..+. .|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|+++++++
T Consensus       168 -~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          168 -SVNLGDKYHKNTALHWAVLA-GNTTVISLLLEA------GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             -CTTCCCTTTCCCHHHHHHHH-TCHHHHHHHHHH------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             -CcchhhccCCCcHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence             5677776 899999999986 667899999988      5789999999999999999999999999999988775

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.71  E-value=1.3e-17  Score=152.73  Aligned_cols=93  Identities=16%  Similarity=0.032  Sum_probs=86.0

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.||||+|++.|+.++|++||++|+            ++|.++..|+||||+|+.  +..+++++|+++      ++++
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~------g~~~   70 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGA------------DPNALNRFGRRPIQVMMM--GSAQVAELLLLH------GAEP   70 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTC------------CTTCCCTTCCTTTTTSTT--SCHHHHHHHHHH------TCCS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCC------------CcCCcCCCCCCHHHHHHc--CCHHHHHHHHHC------CCCC
Confidence            58999999999999999999999998            578899999999999998  677899999987      5789


Q ss_pred             ccCCCC-CCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDAS-GHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~-G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +.+|.. |+||||+|+.+|+.+++++|++++++.
T Consensus        71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  104 (136)
T 1d9s_A           71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARL  104 (136)
T ss_dssp             SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCC
T ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999 999999999999999999999987663

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.71  E-value=7.3e-18  Score=165.74  Aligned_cols=124  Identities=8%  Similarity=-0.021  Sum_probs=102.8

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCc
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCR----RMVDLLIHYSLTSSNDTPQKY  668 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~----eIVeLLL~~GA~~~~~s~~~~  668 (847)
                      ..|+.|+..|..+.++.++...      .+.     .+...|+||||+|+.+|+.    +||++||++||          
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~------~~~-----~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga----------   66 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKG------YED-----KESVLKSNILYDVLRNNNDEARYKISMFLINKGA----------   66 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHS------SSC-----HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC----------
T ss_pred             cHHHHHHHcCCHHHHHHHHhcC------ccc-----ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCC----------
Confidence            5688999999999999888742      121     1212599999999999985    59999999999          


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCc-----HHHHHHHhCCCCCCCCCCCCccCCCCCC-CHHHHHHHcC-----CHHHHHH
Q 003109          669 IFPPNLAGPGGITPLHLAACTSDS-----DDIIDALTNDPQEIGPSSWNSILDASGH-SPYSYALMKN-----NHAYNKL  737 (847)
Q Consensus       669 l~d~na~d~~G~TPLHlAA~~~g~-----e~VveLLL~~p~~vGagA~vnarD~~G~-TPLHyAa~~G-----~~eiIeL  737 (847)
                        ++|.+|..|+||||+|+..+..     .+++++|+++      ||++|++|..|. ||||||+..|     +.+++++
T Consensus        67 --dvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~------Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~  138 (186)
T 3t8k_A           67 --DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK------GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL  138 (186)
T ss_dssp             --CSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT------TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred             --CCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC------CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence              6899999999999999986532     4689999998      678999999999 9999999954     4568899


Q ss_pred             HHH-hhccc
Q 003109          738 VAR-KLADR  745 (847)
Q Consensus       738 Ll~-K~a~~  745 (847)
                      |++ ++++.
T Consensus       139 Ll~~~gad~  147 (186)
T 3t8k_A          139 IFSQSGLQL  147 (186)
T ss_dssp             HHTSTTCCT
T ss_pred             HHHhcCCCC
Confidence            998 87775

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.70  E-value=4.1e-17  Score=149.35  Aligned_cols=94  Identities=21%  Similarity=0.207  Sum_probs=86.2

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .+.||||+||+.|+.++|++|+++|+            ++|.+|..|.||||+|+.. +..+++++|+++      ++++
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~------------~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~   73 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGA------------DVNAKDEYGLTPLYLATAH-GHLEIVEVLLKN------GADV   73 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTC------------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCT
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCC------------CCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCC
Confidence            47899999999999999999999998            5788999999999999986 667899999987      5689


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus        74 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  106 (136)
T 2jab_A           74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV  106 (136)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999987653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.70  E-value=4.1e-17  Score=167.81  Aligned_cols=138  Identities=15%  Similarity=0.068  Sum_probs=107.7

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCC----
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSL-TSSNDTPQK----  667 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA-~~~~~s~~~----  667 (847)
                      .++|.|+.+|+.+.++.|+..+.+..++..       +. .|+||||+|++.|+.++|++||++|+ +....+..+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-------d~-~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL  149 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIA-------DS-NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPI  149 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-------CT-TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-------CC-CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHH
Confidence            566788888888888888887655332221       22 59999999999999999999999998 432111110    


Q ss_pred             ----------------------cCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHH
Q 003109          668 ----------------------YIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSY  725 (847)
Q Consensus       668 ----------------------~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHy  725 (847)
                                            ...+++..+..|.||||+||.. |..+++++|+++      ||++|.+|.+|+||||+
T Consensus       150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~------gad~n~~d~~G~TpLh~  222 (276)
T 4hbd_A          150 MLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH-GRVDVVKALLAC------EADVNVQDDDGSTALMC  222 (276)
T ss_dssp             HHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHhC------CCCCCCCCCCCCCHHHH
Confidence                                  0124567788899999999985 678899999987      57899999999999999


Q ss_pred             HHHcCCHHHHHHHHH-hhccc
Q 003109          726 ALMKNNHAYNKLVAR-KLADR  745 (847)
Q Consensus       726 Aa~~G~~eiIeLLl~-K~a~~  745 (847)
                      |+.+|+.+++++|++ ++++.
T Consensus       223 A~~~g~~~iv~~Ll~~~gad~  243 (276)
T 4hbd_A          223 ACEHGHKEIAGLLLAVPSCDI  243 (276)
T ss_dssp             HHHHTCHHHHHHHHTSTTCCT
T ss_pred             HHHCCCHHHHHHHHhcCCCCC
Confidence            999999999999998 66553

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.70  E-value=3.2e-17  Score=175.29  Aligned_cols=134  Identities=17%  Similarity=0.160  Sum_probs=112.9

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHH----HHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDI----LVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTP  665 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~----l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~  665 (847)
                      ..+++||+|+.+|+.++++.|+..    +.+.+++++..     +. .|.||||+|+..|+.+||++||++|+       
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-----d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga-------  190 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-----DC-DENTPLMLAVLARRRRLVAYLMKAGA-------  190 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC-------
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-----CC-CCCCHHHHHHHcChHHHHHHHHHCCC-------
Confidence            356999999999999999988752    33455565543     22 58999999999999999999999998       


Q ss_pred             CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcC---CHHHHHHHHHhh
Q 003109          666 QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN---NHAYNKLVARKL  742 (847)
Q Consensus       666 ~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G---~~eiIeLLl~K~  742 (847)
                           +++.++..|.||||+|+.. +..+++++|+++..   .+++++.+|.+|.||||+|+..|   +.+++++|++++
T Consensus       191 -----~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~---~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g  261 (373)
T 2fo1_E          191 -----DPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTK---LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG  261 (373)
T ss_dssp             -----CSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHH---HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHT
T ss_pred             -----CCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCc---cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCC
Confidence                 5788999999999999985 67889999998720   12578999999999999999998   899999999998


Q ss_pred             ccc
Q 003109          743 ADR  745 (847)
Q Consensus       743 a~~  745 (847)
                      ++.
T Consensus       262 ~~~  264 (373)
T 2fo1_E          262 AKV  264 (373)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            775

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=7.9e-17  Score=143.58  Aligned_cols=87  Identities=18%  Similarity=0.194  Sum_probs=80.8

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.|+||+|+..|+.++|++|+++|+            ++|.+|..|.||||+||.. +..+++++|+++      ++++
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~------------~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~------ga~~   83 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGA------------DVAAKDKNGSTPLHLAARN-GHLEVVKLLLEA------GADV   83 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTC------------CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCC------------CCCccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCc
Confidence            58899999999999999999999998            5788999999999999985 678899999987      5789


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHH
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLV  738 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLL  738 (847)
                      +.+|..|+||||+|+.+|+.+++++|
T Consensus        84 ~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           84 XAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccCCCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999987

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.67  E-value=2e-16  Score=139.53  Aligned_cols=94  Identities=24%  Similarity=0.227  Sum_probs=85.4

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      +|+||||+|++.|+.++|++|+++|+            +++..+..|.||||+|+.. +..+++++|+++      ++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~------------~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~   61 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA------------DVNAKDKNGRTPLHLAARN-GHLEVVKLLLEA------GADV   61 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC------------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC------------CCCCcCCCCCcHHHHHHHc-CcHHHHHHHHHc------CCCC
Confidence            38899999999999999999999998            5688899999999999985 677899999987      5678


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +.+|..|.||||+|+..|+.+++++|++++.+.
T Consensus        62 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~   94 (126)
T 1n0r_A           62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV   94 (126)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC
Confidence            999999999999999999999999999987653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.67  E-value=1.7e-16  Score=159.87  Aligned_cols=94  Identities=22%  Similarity=0.194  Sum_probs=87.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .+.||||+|++.|+.++|++||++|+            ++|.+|..|+||||+||.. +..+++++|++.      ++++
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~------------~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~------ga~~   80 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEMN------------DPSQPNEEGITALHNAICG-ANYSIVDFLITA------GANV   80 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHSS------------CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcCC------------CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCC
Confidence            57899999999999999999999998            5789999999999999985 678899999987      5789


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |.+|..|+||||+|+.+|+.+++++|++++++-
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~  113 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAI  113 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            999999999999999999999999999988765

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.66  E-value=2.6e-16  Score=154.74  Aligned_cols=95  Identities=19%  Similarity=0.077  Sum_probs=87.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.||||+|++.|+.++|++||++|+            ++|.+|..|+||||+||.. ++.+++++|++..     ++++
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~------------~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~-----g~~~  133 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRV------------GVNGLDKAGSTALYWACHG-GHKDIVEMLFTQP-----NIEL  133 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTC------------CTTCCCTTSCCHHHHHHHT-TCHHHHHHHTTST-----TCCC
T ss_pred             ccccccccccccCcHHHHHHHHhCCC------------CccccCCCCCCHHHHHHHc-CCHHHHHHHHcCC-----CCCc
Confidence            48899999999999999999999998            5788999999999999985 6788999999862     5689


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |.+|..|+||||+|+.+|+.+++++|++++++.
T Consensus       134 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  166 (222)
T 3ehr_A          134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGART  166 (222)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999998875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.64  E-value=3.2e-16  Score=150.66  Aligned_cols=93  Identities=15%  Similarity=0.013  Sum_probs=85.2

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.||||+|++.|+.++|++||+ |+            ++|.+|..|+||||+|+.. ++.+++++|+++      ++++
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~------------~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~  102 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DR------------DVDAVDENGRTALLFVAGL-GSDKCVRLLAEA------GADL  102 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TS------------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cC------------CCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCC
Confidence            48899999999999999999999 77            6789999999999999986 677899999988      5789


Q ss_pred             ccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILD-ASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD-~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |.+| .+|+||||+|+.+|+.+++++|++++++.
T Consensus       103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  136 (183)
T 3deo_A          103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI  136 (183)
T ss_dssp             TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred             CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC
Confidence            9998 89999999999999999999999988764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.63  E-value=3.5e-16  Score=146.33  Aligned_cols=93  Identities=16%  Similarity=0.071  Sum_probs=85.4

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.||||+|++.|+.++|++||++|+            ++|.++..|.||||+|+  .+..+++++|+++      ++++
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~------------~~~~~~~~g~t~L~~A~--~~~~~~v~~Ll~~------g~~~   70 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGA------------NPNAPNSYGRRPIQVMM--MGSARVAELLLLH------GAEP   70 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTC------------CTTCCCSSSCCTTTSSC--TTCHHHHHHHHTT------TCCC
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCC------------CCCCCCCCCCCHHHHHH--cCCHHHHHHHHHc------CCCC
Confidence            58899999999999999999999998            57889999999999984  4778899999987      5789


Q ss_pred             ccCCCCCCC-HHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDASGHS-PYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~G~T-PLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |.+|..|+| |||+|+.+|+.+++++|++++++.
T Consensus        71 ~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~  104 (156)
T 1bi7_B           71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARL  104 (156)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS
T ss_pred             CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            999999999 999999999999999999987764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.61  E-value=3.1e-16  Score=165.05  Aligned_cols=126  Identities=13%  Similarity=-0.006  Sum_probs=95.8

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      .++|.|+..+..++++.|++    .+++++..    .+. .|+||||+||+.|+.+||++||++|+            ++
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~----~g~dvn~~----~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~Ga------------d~  157 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPN----TQLNLNIP----VDE-HGNTPLHWLTSIANLELVKHLVKHGS------------NR  157 (327)
T ss_dssp             -----CHHHHHHHHHHHCTT----SCCCSCSC----CST-TCCCHHHHHHHTTCHHHHHHHHHTTC------------CT
T ss_pred             chhHHHHHhhHHHHHHHHHh----cCCCcccc----cCC-CCCcHHHHHHHcCCHHHHHHHHHcCC------------CC
Confidence            34577777776777777666    34555531    022 59999999999999999999999998            67


Q ss_pred             CCCCCCCChHHHHHHhcCCc---HHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHH----cCCHHHHHHHHHhhccc
Q 003109          673 NLAGPGGITPLHLAACTSDS---DDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALM----KNNHAYNKLVARKLADR  745 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~---e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~----~G~~eiIeLLl~K~a~~  745 (847)
                      |.+|..|+||||+|+.. ++   .+++..|++.    + .++++.+|..|+||||+|++    .|+.+++++|++++..-
T Consensus       158 n~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~----~-~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~  231 (327)
T 1sw6_A          158 LYGDNMGESCLVKAVKS-VNNYDSGTFEALLDY----L-YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW  231 (327)
T ss_dssp             TBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHH----H-GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHh-cccccHHHHHHHHHh----h-hccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHH
Confidence            99999999999999985 44   2455555554    1 24689999999999999999    99999999999886543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.61  E-value=6.9e-16  Score=155.98  Aligned_cols=93  Identities=15%  Similarity=0.013  Sum_probs=85.5

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.||||+|++.|+.++|++||+ |+            ++|.+|..|+||||+||.. |+.+++++|+++      ++++
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~------------~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~------ga~~  103 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DR------------DVDAVDENGRTALLFVAGL-GSDKCVRLLAEA------GADL  103 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TC------------CTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHT------TCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CC------------CCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHc------CCCC
Confidence            48899999999999999999999 87            6789999999999999986 677899999998      5789


Q ss_pred             ccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILD-ASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD-~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |.+| ..|+||||+|+.+|+.+++++|++++++.
T Consensus       104 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  137 (244)
T 3ui2_A          104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI  137 (244)
T ss_dssp             TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999 88999999999999999999999998775

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.59  E-value=1.3e-16  Score=174.37  Aligned_cols=130  Identities=11%  Similarity=0.130  Sum_probs=100.8

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++||+|+..|+.++++.|++...... ..+     ..+. .|.||||+|+++|+.+||++|+++|++..         
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~-~~~-----~~~~-~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~---------  155 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDE-IVK-----VIQA-ENYQAFRLAAENGHLHVLNRLCELAPTEI---------  155 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCS-SCC-------CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTTH---------
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHH-HHH-----Hhcc-CCCCHHHHHHHcCCHHHHHHHHhCCCCcc---------
Confidence            3599999999999999999998643110 000     1122 36799999999999999999999997310         


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcc--CCCCCCCHHHHHH-HcCCHHHHHHHHHhhcc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI--LDASGHSPYSYAL-MKNNHAYNKLVARKLAD  744 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vna--rD~~G~TPLHyAa-~~G~~eiIeLLl~K~a~  744 (847)
                      .++..+.+ .||||+||. .|+.+++++|+++      +++++.  +|.+|.||||+|+ .+||.+++++|++++++
T Consensus       156 ~~~i~~~~-~TpLh~Aa~-~G~~eiv~~Ll~~------ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          156 MAMIQAEN-YHAFRLAAE-NGHLHVLNRLCEL------APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  224 (376)
T ss_dssp             HHHHSHHH-HHHHHHHHH-TTCHHHHHHHHHS------CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             ccccCCCC-CCHHHHHHH-CCCHHHHHHHHHc------CCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc
Confidence            01233333 999999998 4788899999998      567777  8999999999999 99999999999987654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.56  E-value=1.5e-15  Score=134.52  Aligned_cols=105  Identities=19%  Similarity=0.091  Sum_probs=88.5

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+..|..++++.|++..    ++++..     +. .|.||||+|+..|+.++|++|+++|+           
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~-----d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~-----------   66 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKG----ADVNAR-----SK-DGNTPLHLAAKNGHAEIVKLLLAKGA-----------   66 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTT----CCSSCC-----CS-SSCCTTHHHHTTTCHHHHHHHTTTTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHcCcHHHHHHHHHcCC-----------
Confidence            4468999999999999999999853    444432     22 58999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHH
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPY  723 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPL  723 (847)
                       +++.+|..|.||||+|+.. +..+++++|+++      ||++|.++..|.||-
T Consensus        67 -~~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~~------ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           67 -DVNARSKDGNTPEHLAKKN-GHHEIVKLLDAK------GADVNARSWGSSHHH  112 (115)
T ss_dssp             -CTTCCCTTCCCTTHHHHTT-TCHHHHHHHHTT------SSSHHHHSCCCC---
T ss_pred             -CCcccCCCCCCHHHHHHHC-CCHHHHHHHHHc------CCCCCcCCccccccc
Confidence             5788999999999999985 678899999998      678999999999984

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.56  E-value=1.3e-14  Score=124.71  Aligned_cols=88  Identities=23%  Similarity=0.253  Sum_probs=76.8

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      +++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|++.|+.++|++|+++|+            +
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~n~~-----d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga------------~   60 (93)
T 1n0q_A            3 RTPLHLAARNGHLEVVKLLLEAG----ADVNAK-----DK-NGRTPLHLAARNGHLEVVKLLLEAGA------------D   60 (93)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcC----CCCccc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            58999999999999999999853    444433     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTND  702 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~  702 (847)
                      +|.+|..|.||||+|+.. +..+++++|+++
T Consensus        61 ~~~~d~~g~t~l~~A~~~-~~~~~~~~Ll~~   90 (93)
T 1n0q_A           61 VNAKDKNGRTPLHLAARN-GHLEVVKLLLEA   90 (93)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT
T ss_pred             CCccCCCCCCHHHHHHHc-CCHHHHHHHHHc
Confidence            789999999999999985 678899999987

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.54  E-value=2.8e-15  Score=157.69  Aligned_cols=108  Identities=15%  Similarity=0.037  Sum_probs=84.8

Q ss_pred             hhhHHHHHHHhc---CchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 003109          590 RFKFLLVFSVDR---GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQ  666 (847)
Q Consensus       590 R~k~LL~FAvdr---Gw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~  666 (847)
                      ..+++||+|+..   |..+++++||+..    .+++..     +. .|+||||+|++.|+.+||++||++|+        
T Consensus       189 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g----advn~~-----d~-~G~TpLh~A~~~g~~~~v~~Ll~~ga--------  250 (301)
T 2b0o_E          189 PEELVLHLAVKVANQASLPLVDFIIQNG----GHLDAK-----AA-DGNTALHYAALYNQPDCLKLLLKGRA--------  250 (301)
T ss_dssp             CEECHHHHHHHTCCTTTHHHHHHHHHHS----SCTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHHTTC--------
T ss_pred             CCccHHHHHHHhcccCcHHHHHHHHhcC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC--------
Confidence            346999999986   8999999999974    344433     22 59999999999999999999999998        


Q ss_pred             CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCH
Q 003109          667 KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNH  732 (847)
Q Consensus       667 ~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~  732 (847)
                          ++|++|..|.||||+|+.. +..+++++|+++      +++      .|.||||+|+..|+.
T Consensus       251 ----d~~~~d~~G~TpL~~A~~~-~~~~iv~~Ll~~------ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          251 ----LVGTVNEAGETALDIARKK-HHKECEELLEQA------QAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             ----CCSCCCTTSCCHHHHHHHH-TCHHHHHHHHHH------HHH------TTSSCCC--------
T ss_pred             ----CCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHh------cCC------CCCChhHHHHhcCCc
Confidence                6789999999999999985 677899999987      322      689999999999874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.50  E-value=1.6e-15  Score=165.74  Aligned_cols=122  Identities=8%  Similarity=0.014  Sum_probs=99.5

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      +.+++||+|+.+|+.++|++|++...    +..   .......+ .||||+|++.|+.+||++|+++|+           
T Consensus       127 ~~~tpL~~Aa~~G~~eiv~~Ll~~ga----d~~---~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga-----------  187 (376)
T 2aja_A          127 ENYQAFRLAAENGHLHVLNRLCELAP----TEI---MAMIQAEN-YHAFRLAAENGHLHVLNRLCELAP-----------  187 (376)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCT----TTH---HHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCG-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCC----Ccc---ccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCC-----------
Confidence            44689999999999999999998531    110   00111212 799999999999999999999998           


Q ss_pred             CCCCC--CCCCCChHHHHHH-hcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNL--AGPGGITPLHLAA-CTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na--~d~~G~TPLHlAA-~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                       +++.  .|..|.||||+|| . .|+.+|+++|+++    |  +       .|.||||+|+.+|+.+++++|++++++.
T Consensus       188 -~~~~~~~d~~g~TpL~~Aa~~-~G~~eiv~~Ll~~----g--a-------~~~taL~~Aa~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          188 -TEATAMIQAENYYAFRWAAVG-RGHHNVINFLLDC----P--V-------MLAYAEIHEFEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             -GGHHHHHHHHHHHHHHHHHST-TCCHHHHHHHTTS----H--H-------HHHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             -ccchhccCCCCCCHHHHHHHH-CCCHHHHHHHHhC----C--C-------ccchHHHHHHHCCCHHHHHHHHhcCccc
Confidence             3455  7788999999999 7 5788899999986    2  2       2899999999999999999999998765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.46  E-value=8.4e-14  Score=151.83  Aligned_cols=95  Identities=20%  Similarity=0.126  Sum_probs=86.2

Q ss_pred             ccCchHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCC--CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCC
Q 003109          632 LWEIQLLNRAVKM-KCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAG--PGGITPLHLAACTSDSDDIIDALTNDPQEIGP  708 (847)
Q Consensus       632 l~g~TpLH~AV~~-g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d--~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGa  708 (847)
                      ..+.|+||+|++. |+.++|++||++|+            ++|..+  ..|.||||+||.. +..+++++|+++      
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga------------dvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~------  257 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGA------------DVNWVNGGQDNATPLIQATAA-NSLLACEFLLQN------  257 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTC------------CTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHT------
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCC------------CCCccccccCCCCHHHHHHHC-CCHHHHHHHHHc------
Confidence            3567999999999 99999999999998            567777  8999999999985 678899999998      


Q ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          709 SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       709 gA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|++|.+|..|+||||+|+..|+.+++++|++++++.
T Consensus       258 Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~  294 (368)
T 3jue_A          258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL  294 (368)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCC
Confidence            5789999999999999999999999999999998775

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.43  E-value=1.6e-13  Score=153.29  Aligned_cols=93  Identities=19%  Similarity=0.060  Sum_probs=82.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCC------CCCCChHHHHHHh--cCCcHHHHHHHhCCCCCC
Q 003109          635 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLA------GPGGITPLHLAAC--TSDSDDIIDALTNDPQEI  706 (847)
Q Consensus       635 ~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~------d~~G~TPLHlAA~--~~g~e~VveLLL~~p~~v  706 (847)
                      .+.||.|++.|+.++|+.||++|++            +|..      +..|.||||+|+.  ..++.+++++|+++    
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~------------~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~----  196 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQD------------FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN----  196 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCC------------SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH----
T ss_pred             HHHHHHHHhccCHHHHHHHHhhccc------------ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc----
Confidence            3779999999999999999999984            4444      8899999999953  24678899999998    


Q ss_pred             CCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          707 GPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       707 GagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                        ||++|++|.+|+||||+|+.+|+.+++++|++++++.
T Consensus       197 --ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~  233 (497)
T 3lvq_E          197 --GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV  233 (497)
T ss_dssp             --SCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCC
T ss_pred             --CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence              5789999999999999999999999999999998886

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.43  E-value=3.1e-13  Score=140.42  Aligned_cols=100  Identities=22%  Similarity=0.151  Sum_probs=86.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcC--CcHHHHHHHhCCCCCCCCCCC
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTS--DSDDIIDALTNDPQEIGPSSW  711 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~--g~e~VveLLL~~p~~vGagA~  711 (847)
                      ..++||.|++.|+.+.++.|++.|++..      ..+.++..+..|.||||+||..+  +..+++++|+++      ||+
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~------~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~------ga~  197 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLT------EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN------SGN  197 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTT------SBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH------CSC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchh------hhccccccccCCCCcchHHHHhcccchHHHHHHHHHC------CCC
Confidence            4589999999999999999999998531      01125677889999999999863  678899999998      578


Q ss_pred             CccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          712 NSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       712 vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|.+|.+|+||||+|+.+|+.+++++|++++++.
T Consensus       198 in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~  231 (278)
T 1dcq_A          198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI  231 (278)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999998874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.38  E-value=1.4e-12  Score=116.01  Aligned_cols=87  Identities=14%  Similarity=0.107  Sum_probs=74.7

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++||+|+..|+.++++.|++.    +++++..     +. .|.||||+|++.|+.++|++||++|+           
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~----g~~i~~~-----d~-~g~tpLh~A~~~~~~~~v~~Ll~~ga-----------   81 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMAN----GADVAAK-----DK-NGSTPLHLAARNGHLEVVKLLLEAGA-----------   81 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHT----TCCTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHHTTC-----------
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHc----CCCCCcc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence            467999999999999999999985    3444433     22 58999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHH
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDAL  699 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLL  699 (847)
                       ++|.+|..|+||||+|+.. +..+++++|
T Consensus        82 -~~~~~d~~g~tpl~~A~~~-~~~~~~~~L  109 (110)
T 2zgd_A           82 -DVXAQDKFGKTAFDISIDN-GNEDLAEIL  109 (110)
T ss_dssp             -CTTCCCTTSCCHHHHHHHH-TCHHHHHHH
T ss_pred             -CccccccCCCcHHHHHHHc-CCHHHHHHh
Confidence             5789999999999999986 677798877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	847
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.81
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.8
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.79
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.79
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.78
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.77
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.77
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.76
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.75
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.75
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.75
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.73
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.72
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.71
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.68
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.66
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.62
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.61
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.61
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.59
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.59
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.57
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.55
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.53
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.52
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.48
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.47
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.42
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.38
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.34
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.19

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.6e-20  Score=175.67  Aligned_cols=138  Identities=19%  Similarity=0.155  Sum_probs=109.7

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM---KCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~---g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      +.|+-|+..+....+..++..    +++.....+.......|+||||+|++.   ++.+||++||++|+           
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~----g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-----------   72 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYAD----GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-----------   72 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT----TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-----------
T ss_pred             HHHHHHHHhCCHHHHHHHHHc----CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC-----------
Confidence            456678888877766666653    333332211111122489999999984   78899999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccccCCc
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQ  749 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~~~~~  749 (847)
                       ++|.+|..|.||||+||.. |..+++++|+++      ||+++++|.+|+||||||+++|+.+++++|++.++.+.+.|
T Consensus        73 -din~~d~~g~TpLh~A~~~-~~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~~~  144 (154)
T d1dcqa1          73 -NLDKQTGKGSTALHYCCLT-DNAECLKLLLRG------KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH  144 (154)
T ss_dssp             -CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCSS
T ss_pred             -Chhhhhhhhcccccccccc-cccccccccccc------CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCcc
Confidence             6799999999999999985 778899999998      57899999999999999999999999999999988887666


Q ss_pred             cccc
Q 003109          750 VTIP  753 (847)
Q Consensus       750 v~~~  753 (847)
                      ..++
T Consensus       145 ~~~~  148 (154)
T d1dcqa1         145 VHVE  148 (154)
T ss_dssp             CCCC
T ss_pred             hhhh
Confidence            6554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.81  E-value=5e-20  Score=181.32  Aligned_cols=137  Identities=18%  Similarity=0.207  Sum_probs=107.5

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHH----HhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCC--C--
Q 003109          591 FKFLLVFSVDRGCCALVKAILDIL----VEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS--N--  662 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l----~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~--~--  662 (847)
                      .+++||+|+..|+.++++.||...    ...|++++..     +. .|+||||+|++.|+.++|++||++|++..  +  
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~-----d~-~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~  106 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-----DC-DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS  106 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc-----CC-CCCeeecccccccccccccccccccccccccccc
Confidence            469999999999999999998753    2345666643     33 59999999999999999999999999641  0  


Q ss_pred             CCC-----------------------------------------------------------------------------
Q 003109          663 DTP-----------------------------------------------------------------------------  665 (847)
Q Consensus       663 ~s~-----------------------------------------------------------------------------  665 (847)
                      +..                                                                             
T Consensus       107 g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (277)
T d2fo1e1         107 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK  186 (277)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCC
T ss_pred             ccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccC
Confidence            000                                                                             


Q ss_pred             -C--------------------CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHH
Q 003109          666 -Q--------------------KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYS  724 (847)
Q Consensus       666 -~--------------------~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLH  724 (847)
                       .                    ....+.+.+|..|+||||+||.. |..+++++|+++      ||++|++|.+|.||||
T Consensus       187 g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~-g~~~iv~~Ll~~------gadin~~d~~G~T~L~  259 (277)
T d2fo1e1         187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE-GRIEVVMYLIQQ------GASVEAVDATDHTARQ  259 (277)
T ss_dssp             CCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCSSCCCSSSCCHHH
T ss_pred             CCCccccccccccccccccccccccccccccCCCCCCHHHHHHHc-CCHHHHHHHHHC------cCCCCCcCCCCCCHHH
Confidence             0                    00124566788899999999885 567789998887      5788999999999999


Q ss_pred             HHHHcCCHHHHHHHHH
Q 003109          725 YALMKNNHAYNKLVAR  740 (847)
Q Consensus       725 yAa~~G~~eiIeLLl~  740 (847)
                      ||+++||.++|++|++
T Consensus       260 ~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         260 LAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHTTCHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            9999999999998875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.5e-19  Score=164.98  Aligned_cols=129  Identities=12%  Similarity=0.080  Sum_probs=106.1

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC------
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTP------  665 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~------  665 (847)
                      .++|+.|+..|+.++|+.||+...    +.. .     +. .|.||||+|++.++.++++.++...........      
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga----~~~-~-----~~-~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGA----PFT-T-----DW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPL   71 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTC----CCC-C-----CT-TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCC----Ccc-c-----cc-CCCcccccccccccccccccccccccccccccccccccc
Confidence            589999999999999999999742    322 1     22 489999999999999999999988764211110      


Q ss_pred             ---------------CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcC
Q 003109          666 ---------------QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN  730 (847)
Q Consensus       666 ---------------~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G  730 (847)
                                     ..+..+++.++..|+||||+|+.. +..+++++|+++      |+++|.+|.+|.||||+|+.+|
T Consensus        72 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~-g~~~iv~~ll~~------gad~~~~d~~g~Tpl~~A~~~g  144 (153)
T d1awcb_          72 HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKY------GADVHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccccccceeeecccccCCccccccccCchHHHhhhhc-chhheeeecccc------ccCCcccCCCCCCHHHHHHHcC
Confidence                           012346788999999999999985 678899999988      5789999999999999999999


Q ss_pred             CHHHHHHH
Q 003109          731 NHAYNKLV  738 (847)
Q Consensus       731 ~~eiIeLL  738 (847)
                      |.+++++|
T Consensus       145 ~~eiv~lL  152 (153)
T d1awcb_         145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHhC
Confidence            99999987

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3e-20  Score=169.02  Aligned_cols=119  Identities=21%  Similarity=0.236  Sum_probs=101.9

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      .++||+|+.+|+.++++.||+..    ++++..     +. .|.|+||.|+ .|+.+||++|+++|+            +
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~g----ad~n~~-----~~-~g~t~l~~a~-~g~~~~v~~Ll~~ga------------~   60 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAG----ANPNAP-----NS-YGRRPIQVMM-MGSARVAELLLLHGA------------E   60 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTT----CCTTCC-----CS-SSCCTTTSSC-TTCHHHHHHHHTTTC------------C
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcC----Cccccc-----cc-cccccccccc-ccccccccccccccc------------c
Confidence            37899999999999999999853    444433     22 5899999765 799999999999998            5


Q ss_pred             CCCCCCCCC-hHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 003109          672 PNLAGPGGI-TPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVAR  740 (847)
Q Consensus       672 ~na~d~~G~-TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~  740 (847)
                      +|.++..|. ||||+||.. |..+++++|+++      |++++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        61 ~~~~~~~~~~~~L~~A~~~-g~~~~v~~Ll~~------ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          61 PNCADPATLTRPVHDAARE-GFLDTLVVLHRA------GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCCCTTTCCCHHHHHHHH-TCHHHHHHHHHH------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccc-cccccccccccc------ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            788888776 699999985 677899999997      57899999999999999999999999999864

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=4.1e-19  Score=173.92  Aligned_cols=96  Identities=24%  Similarity=0.209  Sum_probs=81.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.||||+||++|+.++|++|++++++.           .+.++..|.||||+||.. +..+++++|+++      ||++
T Consensus       157 ~g~TpLh~A~~~~~~~~v~~Ll~~~~~~-----------~~~~~~~g~TpL~~A~~~-~~~~~v~~Ll~~------gadi  218 (255)
T d1oy3d_         157 DGHTPLHVAVIHKDAEMVRLLRDAGADL-----------NKPEPTCGRTPLHLAVEA-QAASVLELLLKA------GADP  218 (255)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCT-----------TCCCTTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             cCcccccccccccccccccchhcccccc-----------cccccccccccccccccc-cHHHHHHHHHHC------CCCC
Confidence            4678888888888888888888888731           234567899999999985 567799999987      5789


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcccc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADRR  746 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~~  746 (847)
                      |.+|.+|.||||+|+.+|+.+++++|+++||++.
T Consensus       219 n~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~~  252 (255)
T d1oy3d_         219 TARMYGGRTPLGSALLRPNPILARLLRAHGAPEP  252 (255)
T ss_dssp             TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=2.8e-20  Score=167.89  Aligned_cols=107  Identities=13%  Similarity=0.068  Sum_probs=92.5

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      +||++|+.+|+.++++.|++.    +++++..     +. .|+||||+|+..|+.+++++|+++|+            ++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~----g~d~n~~-----~~-~g~t~lh~A~~~~~~~~~~~ll~~g~------------di   61 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAK----GEDVNRT-----LE-GGRKPLHYAADCGQLEILEFLLLKGA------------DI   61 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT----TCCCCCC-----SS-SSCCTTHHHHHHSTTTHHHHHHHSSC------------TT
T ss_pred             hHHHHHHHCCCHHHHHHHHHh----hhccccc-----cc-cccccccccccccccccccccccccc------------ee
Confidence            799999999999999999985    3455433     22 58999999999999999999999998            57


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHH
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALM  728 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~  728 (847)
                      |.+|..|+||||+|+.. +..+++++|+++      ||++|.+|.+|+||||+|..
T Consensus        62 n~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~------Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          62 NAPDKHHITPLLSAVYE-GHVSCVKLLLSK------GADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TCCSSSCSCHHHHHHTT-TCCHHHHHHHTT------CCCSSSSSSSTCCCCCTCSS
T ss_pred             eecccccccchhhhhhc-Cchhhhhhhhcc------cccceeeCCCCCCHHHHHhH
Confidence            89999999999999985 667799999987      57899999999999999843

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.4e-19  Score=164.33  Aligned_cols=122  Identities=19%  Similarity=0.150  Sum_probs=103.5

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      .+|+.|+.+|+.++++.|++..    .+++..     +. .|+||||+|+..|+.+++++|+++|+            ++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g----~d~n~~-----d~-~g~t~Lh~A~~~~~~~~~~~ll~~g~------------~~   60 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV----DDPSLP-----ND-EGITALHNAVCAGHTEIVKFLVQFGV------------NV   60 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT----SSCCCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHHTC------------CT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC----CCcccc-----cc-cccccccccccccccccccccccccc------------cc
Confidence            5899999999999999999853    444433     23 59999999999999999999999998            57


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCC-CCCCHHHHH--HHcCCHHHHHHHHHhhc
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA-SGHSPYSYA--LMKNNHAYNKLVARKLA  743 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~-~G~TPLHyA--a~~G~~eiIeLLl~K~a  743 (847)
                      |.+|..|+||||+|+.. |+.+++++|+++      ||+++++|. +|+||+++|  +.+||.+++++|+....
T Consensus        61 ~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~------ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          61 NAADSDGWTPLHCAASC-NNVQVCKFLVES------GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             TCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             ccccccCcccccccchh-hHHHHHHHHHHc------CCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            89999999999999985 678899999998      578898875 589998776  57899999999987543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=159.66  Aligned_cols=134  Identities=15%  Similarity=0.135  Sum_probs=108.4

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CC---
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDT--PQ---  666 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s--~~---  666 (847)
                      .++||+|+.+|+.++++.|++.    +++++..     +. .|+||||+|+ .|+.+++++||++|++.....  ..   
T Consensus         2 ~~~Lh~Aa~~g~~~~v~~Ll~~----g~d~n~~-----d~-~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l   70 (156)
T d1ihba_           2 GNELASAAARGDLEQLTSLLQN----NVNVNAQ-----NG-FGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVI   70 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTS----CCCTTCC-----CT-TSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHC----CCCcCcc-----CC-cccccccccc-cccccccccccccccccccccccCcccc
Confidence            3799999999999999999995    3455433     23 5999999886 789999999999999642111  10   


Q ss_pred             ----------------CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcC
Q 003109          667 ----------------KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN  730 (847)
Q Consensus       667 ----------------~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G  730 (847)
                                      .+..+++..+..|.||||+|+.. +..++++.|++++     +.+.+.+|.+|+||||+|+++|
T Consensus        71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~Ll~~~-----~~~~~~~d~~g~TpL~~A~~~~  144 (156)
T d1ihba_          71 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHT-----ASNVGHRNHKGDTACDLARLYG  144 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHS-----CCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-----cccccccCCCCCCHHHHHHHcC
Confidence                            12346788999999999999985 5677899888872     2478999999999999999999


Q ss_pred             CHHHHHHHHHhh
Q 003109          731 NHAYNKLVARKL  742 (847)
Q Consensus       731 ~~eiIeLLl~K~  742 (847)
                      +.+++++|+++|
T Consensus       145 ~~~iv~~Ll~~G  156 (156)
T d1ihba_         145 RNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHhcC
Confidence            999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.9e-18  Score=160.28  Aligned_cols=132  Identities=17%  Similarity=0.150  Sum_probs=95.7

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-----
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQ-----  666 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~-----  666 (847)
                      ...|+.|+.+|+.++|+.||..   ++.+.+..     +. .|+||||+|+. |+.++|+.||+++++.......     
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~---~~~~~n~~-----d~-~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l   72 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHR---ELVHPDAL-----NR-FGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPV   72 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT---TCCCTTCC-----CT-TSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHh---CCCCCCcc-----CC-CCCcccccccc-ccccccccccccccccccccccccccc
Confidence            4557777777777777777764   23333322     22 47777777653 6777777777777653211100     


Q ss_pred             ----------------CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcC
Q 003109          667 ----------------KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN  730 (847)
Q Consensus       667 ----------------~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G  730 (847)
                                      ....++|.+|..|.||||+|+.. +..+++++|+.       +++++.+|.+|+||||+|+++|
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~-~~~~i~~~L~~-------~~~~~~~d~~G~TpL~~A~~~g  144 (156)
T d1bd8a_          73 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE-GHTAVVSFLAA-------ESDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHT-------TSCTTCCCTTSCCHHHHHHHSC
T ss_pred             ccccccccccccccccccccccccccCCCCeeecccccc-ccccccccccc-------cccccccCCCCCCHHHHHHHcC
Confidence                            01236789999999999999986 66779998885       3678999999999999999999


Q ss_pred             CHHHHHHHHHh
Q 003109          731 NHAYNKLVARK  741 (847)
Q Consensus       731 ~~eiIeLLl~K  741 (847)
                      +.+++++|+++
T Consensus       145 ~~~iv~~Ll~h  155 (156)
T d1bd8a_         145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.3e-18  Score=168.56  Aligned_cols=136  Identities=18%  Similarity=0.094  Sum_probs=94.7

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      .+++|||+|+.+|+.+++++||+...+.. .++..     +. .|.||||+||+.|+.++|++||++|+           
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~-~i~~~-----~~-~g~TpL~~A~~~g~~~iv~~Ll~~ga-----------   69 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHE-YLDLQ-----ND-LGQTALHLAAILGEASTVEKLYAAGA-----------   69 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSG-GGGCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cccCc-----CC-CCCCccchHHhhcccccccccccccc-----------
Confidence            45799999999999999999999753311 01111     22 58899999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCC-----------------------------------------CCCC
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQ-----------------------------------------EIGP  708 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~-----------------------------------------~vGa  708 (847)
                       ++|.+|..|.||||+|+.. +..++++.|++...                                         ....
T Consensus        70 -~i~~~d~~g~tpL~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (255)
T d1oy3d_          70 -GVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW  147 (255)
T ss_dssp             -CSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCG
T ss_pred             -cccccccccchhhhhhhcc-CchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhc
Confidence             4567777777777777764 44556666653211                                         0001


Q ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          709 SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       709 gA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +.+++.+|.+|+||||+|+.+|+.+++++|++++++.
T Consensus       148 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~  184 (255)
T d1oy3d_         148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL  184 (255)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred             CcccccccccCcccccccccccccccccchhcccccc
Confidence            2345667777777777777777777777777765543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.4e-18  Score=164.88  Aligned_cols=125  Identities=19%  Similarity=0.171  Sum_probs=99.1

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      .+++++++..|+.++++.|++.    +.+++..     +. .|.||||+|+.+|+.+++++|+++|+            +
T Consensus        71 ~~~~~~~~~~~~~~i~~~Ll~~----~~d~~~~-----d~-~g~tpL~~A~~~~~~e~~~~Ll~~g~------------d  128 (223)
T d1uoha_          71 WSPLHIAASAGRDEIVKALLGK----GAQVNAV-----NQ-NGCTPLHYAASKNRHEIAVMLLEGGA------------N  128 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT----TCCTTCC-----CT-TCCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             cccccccccccccchhHHHhcc----CceeEee-----CC-CCCchhhHHHHcCCHHHHHHHHHCCC------------C
Confidence            4666677777777777777764    2333322     22 58899999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++.++..|.||||+|+.. +...++++|...      ++++|.+|.+|+||||+|+++|+.+++++|++++++.
T Consensus       129 ~~~~~~~~~t~L~~a~~~-~~~~~~~~L~~~------~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~  195 (223)
T d1uoha_         129 PDAKDHYEATAMHRAAAK-GNLKMIHILLYY------KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI  195 (223)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             CCCcCCCCCccchhhhhc-CCcchhhhhccc------cceeeeccCCCCceeccccccCcHHHHHHHHHCCCCC
Confidence            678888899999998875 566688888776      4578889999999999999999999999998888765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2.2e-18  Score=163.75  Aligned_cols=87  Identities=22%  Similarity=0.187  Sum_probs=79.8

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .|.|+||+|+.++..++++.|+.+++            ++|..|..|.||||+||.. |+.+++++|+++      |||+
T Consensus       122 ~~~t~l~~~~~~~~~~~~~~l~~~~~------------~~~~~d~~g~TpL~~A~~~-g~~~~v~~Ll~~------gad~  182 (209)
T d1ot8a_         122 SGKTALHWAAAVNNTEAVNILLMHHA------------NRDAQDDKDETPLFLAARE-GSYEASKALLDN------FANR  182 (209)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHTTC------------CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             CCCCcchhhcccCcceeeeeeccccc------------cccccccccccccchhccc-cHHHHHHHHHHC------CCCC
Confidence            46799999999999999999999987            5788999999999999985 678899999987      5789


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHH
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLV  738 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLL  738 (847)
                      |.+|.+|+||||+|+++||.++|++|
T Consensus       183 n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         183 EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999987

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=4.8e-18  Score=163.67  Aligned_cols=147  Identities=19%  Similarity=0.129  Sum_probs=113.1

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCC-----CCCC--
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS-----NDTP--  665 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~-----~~s~--  665 (847)
                      +|||+||.+|+.++++.||..   .+.+++..     +. .|+||||+||..|+.++|++||++|++..     +..+  
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~---~~~~~~~~-----d~-~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~   72 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHS---KPSLLLQK-----DQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT   72 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHH---CGGGTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCC
T ss_pred             HhHHHHHHcCCHHHHHHHHHc---CCCccccc-----CC-CCCCHHHHHHHcCCccccchhhhhhccccccccccccccc
Confidence            699999999999999999986   22333332     22 69999999999999999999999998631     1000  


Q ss_pred             -------------------------------C---------------------CcCCCCCCCCCCCChHHHHHHhcCCcH
Q 003109          666 -------------------------------Q---------------------KYIFPPNLAGPGGITPLHLAACTSDSD  693 (847)
Q Consensus       666 -------------------------------~---------------------~~l~d~na~d~~G~TPLHlAA~~~g~e  693 (847)
                                                     .                     ....+.+.++..|.||||+|+.. +..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~-~~~  151 (229)
T d1ixva_          73 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV-GSL  151 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhc-ccc
Confidence                                           0                     00124566888999999999986 567


Q ss_pred             HHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHh-hccc----cCCcccccc
Q 003109          694 DIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK-LADR----RNGQVTIPV  754 (847)
Q Consensus       694 ~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K-~a~~----~~~~v~~~i  754 (847)
                      ++++.|+..    | ..++|.+|.+|+||||+|+.+|+.+++++|+.+ +++.    .+|+-.+.+
T Consensus       152 ~~~~~Ll~~----~-~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~  212 (229)
T d1ixva_         152 KLIELLCGL----G-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV  212 (229)
T ss_dssp             HHHHHHHTT----T-CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGG
T ss_pred             ccccccccc----c-cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            799999987    2 257899999999999999999999999998864 6654    245555554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.1e-17  Score=153.04  Aligned_cols=142  Identities=18%  Similarity=0.111  Sum_probs=113.1

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCC----CCC-
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN----DTP-  665 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~----~s~-  665 (847)
                      ..+|||+|+.+|+.++++.|++.+.+.+++++..     +. .|+||||+|+..|+.+||++||++|++...    +.. 
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~-----d~-~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~   76 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-----NN-LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   76 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCcc-----CC-CCCccceehhcccccccccccccccccccccccccccc
Confidence            4689999999999999999999887777776644     22 599999999999999999999999985311    000 


Q ss_pred             -----------------------------C-------------------------CcCCCCCCCCCCCChHHHHHHhcCC
Q 003109          666 -----------------------------Q-------------------------KYIFPPNLAGPGGITPLHLAACTSD  691 (847)
Q Consensus       666 -----------------------------~-------------------------~~l~d~na~d~~G~TPLHlAA~~~g  691 (847)
                                                   .                         ............|.||||+|+.. +
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~-~  155 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN-N  155 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-T
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHh-h
Confidence                                         0                         00011234556799999999985 6


Q ss_pred             cHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          692 SDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       692 ~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ...+++.++..      +.+.+.+|.+|.||||+|+.+|+.+++++|++++++.
T Consensus       156 ~~~~~~~~~~~------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~  203 (228)
T d1k1aa_         156 SLSMVQLLLQH------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS  203 (228)
T ss_dssp             CHHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             hhhhhhhhhhh------ccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC
Confidence            67788888887      3568899999999999999999999999999998764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.9e-18  Score=157.03  Aligned_cols=92  Identities=25%  Similarity=0.246  Sum_probs=85.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcc
Q 003109          635 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI  714 (847)
Q Consensus       635 ~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vna  714 (847)
                      .++||.||+.|+.++|++||++|+            ++|.+|..|+||||+|+.. +..+++++|++.      ++++|.
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~------------d~n~~d~~g~t~Lh~A~~~-~~~~~~~~ll~~------g~~~~~   62 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVD------------DPSLPNDEGITALHNAVCA-GHTEIVKFLVQF------GVNVNA   62 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTS------------SCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHH------TCCTTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCC------------Ccccccccccccccccccc-cccccccccccc------cccccc
Confidence            378999999999999999999998            6899999999999999985 678899999987      568999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          715 LDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       715 rD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|.+|+||||+|+.+|+.+++++|++++++.
T Consensus        63 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v   93 (130)
T d1ycsb1          63 ADSDGWTPLHCAASCNNVQVCKFLVESGAAV   93 (130)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccccCcccccccchhhHHHHHHHHHHcCCCc
Confidence            9999999999999999999999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.1e-18  Score=165.47  Aligned_cols=120  Identities=18%  Similarity=0.207  Sum_probs=104.3

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .++|||+|+..|..++++.|++.    +++.+..     +. .|.||||+|++.++.+++++|+.+++            
T Consensus       103 g~tpL~~A~~~~~~e~~~~Ll~~----g~d~~~~-----~~-~~~t~L~~a~~~~~~~~~~~L~~~~~------------  160 (223)
T d1uoha_         103 GCTPLHYAASKNRHEIAVMLLEG----GANPDAK-----DH-YEATAMHRAAAKGNLKMIHILLYYKA------------  160 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHT----TCCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCchhhHHHHcCCHHHHHHHHHC----CCCCCCc-----CC-CCCccchhhhhcCCcchhhhhccccc------------
Confidence            45899999999999999999985    3444422     22 58899999999999999999999987            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVAR  740 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~  740 (847)
                      ++|.+|..|+||||+||.. +..+++++|+++      ||+++.+|.+|+||||+|+ .|+.+++++|++
T Consensus       161 ~i~~~d~~g~TpL~~Aa~~-g~~~~v~~LL~~------Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         161 STNIQDTEGNTPLHLACDE-ERVEEAKLLVSQ------GASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CSCCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             eeeeccCCCCceecccccc-CcHHHHHHHHHC------CCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            6789999999999999985 677899999987      5789999999999999984 799999998874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=3e-18  Score=154.44  Aligned_cols=92  Identities=23%  Similarity=0.126  Sum_probs=84.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcc
Q 003109          635 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI  714 (847)
Q Consensus       635 ~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vna  714 (847)
                      .|||++|+++|+.++|++||++|+            ++|.++..|+||||+||.. +..+++++|++.      ++++|.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~------------d~n~~~~~g~t~lh~A~~~-~~~~~~~~ll~~------g~din~   63 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGE------------DVNRTLEGGRKPLHYAADC-GQLEILEFLLLK------GADINA   63 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTC------------CCCCCSSSSCCTTHHHHHH-STTTHHHHHHHS------SCTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhh------------ccccccccccccccccccc-cccccccccccc------cceeee
Confidence            389999999999999999999998            6789999999999999986 566799999987      578999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          715 LDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       715 rD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +|.+|+||||+|+.+|+.+++++|++++++-
T Consensus        64 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~   94 (118)
T d1myoa_          64 PDKHHITPLLSAVYEGHVSCVKLLLSKGADK   94 (118)
T ss_dssp             CSSSCSCHHHHHHTTTCCHHHHHHHTTCCCS
T ss_pred             cccccccchhhhhhcCchhhhhhhhcccccc
Confidence            9999999999999999999999999988765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-17  Score=172.56  Aligned_cols=120  Identities=17%  Similarity=0.185  Sum_probs=97.5

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  671 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d  671 (847)
                      .++|++|++.++.++++.|++..    .+.+..      ...+.||||.|+..++.+++++|+++|+            +
T Consensus       265 ~~~l~~a~~~~~~~i~~~Ll~~g----~~~~~~------~~~~~t~L~~~~~~~~~~~~~~ll~~g~------------~  322 (408)
T d1n11a_         265 LTPLHLVAQEGHVPVADVLIKHG----VMVDAT------TRMGYTPLHVASHYGNIKLVKFLLQHQA------------D  322 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHT----CCTTCC------CSSCCCHHHHHHHSSCSHHHHHHHHTTC------------C
T ss_pred             CChhhhhhhcCcHHHHHHHHHCC----Cccccc------cccccccchhhcccCcceeeeeeccccc------------c
Confidence            46788888888888888887753    222222      1146788888888888888888888877            6


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 003109          672 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVAR  740 (847)
Q Consensus       672 ~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~  740 (847)
                      +|.+|..|.||||+||.. |..+++++|+++      ||++|++|.+|+||||||+++||.++|++|..
T Consensus       323 in~~d~~G~T~Lh~A~~~-g~~~iv~~Ll~~------GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         323 VNAKTKLGYSPLHQAAQQ-GHTDIVTLLLKN------GASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            789999999999999985 678899999998      67899999999999999999999999998843

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.71  E-value=4.8e-17  Score=162.10  Aligned_cols=148  Identities=17%  Similarity=0.144  Sum_probs=115.4

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--CC---
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSND--TP---  665 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~--s~---  665 (847)
                      ..++|+.||.+|+.++|+.||+.+    ++++..     +. .|+||||+|+++|+.+||++||++|++....  ..   
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~G----advn~~-----d~-~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~  109 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERG----ADINYA-----NV-DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP  109 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHC----CCTTCB-----CT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCC----CCCCcc-----CC-CCCcHHHHHHhcCCceeeeeeccccccccccccccccc
Confidence            358999999999999999999863    444432     22 5899999999999999999999998852100  00   


Q ss_pred             ----------------------------CC------------------------------------------------cC
Q 003109          666 ----------------------------QK------------------------------------------------YI  669 (847)
Q Consensus       666 ----------------------------~~------------------------------------------------~l  669 (847)
                                                  .+                                                ..
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccc
Confidence                                        00                                                00


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcccc---
Q 003109          670 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRR---  746 (847)
Q Consensus       670 ~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~~---  746 (847)
                      ......+..|.||||+|+.. +..++++.|+.+      ++++|.+|.+|+||||+|++.|+.++|++|++++++..   
T Consensus       190 ~~~~~~~~~g~t~L~~a~~~-~~~~~~~~Ll~~------g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d  262 (291)
T d1s70b_         190 INDVRHAKSGGTALHVAAAK-GYTEVLKLLIQA------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN  262 (291)
T ss_dssp             CCCCCCTTTCCCHHHHHHHH-TCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cccccccCCCCChhhHHHHc-CChhhhcccccc------eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            12344677899999999986 677899999987      57899999999999999999999999999999988762   


Q ss_pred             -CCccccccC
Q 003109          747 -NGQVTIPVG  755 (847)
Q Consensus       747 -~~~v~~~i~  755 (847)
                       .|+--+.+.
T Consensus       263 ~~G~TaL~~A  272 (291)
T d1s70b_         263 KVGQTAFDVA  272 (291)
T ss_dssp             TTSCCTTTSC
T ss_pred             CCCCCHHHHH
Confidence             455556554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.4e-16  Score=157.09  Aligned_cols=128  Identities=18%  Similarity=0.197  Sum_probs=104.8

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHH----cCCHHHHHHHHHcCCCCCCCCCCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVK----MKCRRMVDLLIHYSLTSSNDTPQK  667 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~----~g~~eIVeLLL~~GA~~~~~s~~~  667 (847)
                      .++||+|+.+|+.++++.|++.   .+++++..     +. .|.++++.+..    .+..+|+++|+++|+         
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~---~~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga---------  210 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDE---MGADVNAC-----DN-MGRNALIHALLSSDDSDVEAITHLLLDHGA---------  210 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT---SCCCTTCC-----CT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTC---------
T ss_pred             chHHHHHHHcCCHHHHHHHHhc---cCCCcccc-----cC-CCCcccccccccccchHHHHHHHHHHHCCC---------
Confidence            5799999999999999999985   34455433     22 35555555443    445679999999998         


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcccc
Q 003109          668 YIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRR  746 (847)
Q Consensus       668 ~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~~  746 (847)
                         ++|.++..|.||||+||.. +..+++++|+...     ++++|.+|.+|.||||+|+++||.+++++|+++|++..
T Consensus       211 ---~~n~~~~~g~t~L~~a~~~-~~~~~v~~lL~~~-----g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         211 ---DVNVRGERGKTPLILAVEK-KHLGLVQRLLEQE-----HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             ---CSSCCCTTSCCHHHHHHHT-TCHHHHHHHHHSS-----SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             ---CCCccCCCCCCccchhhhc-CcHHHHHHHHHcC-----CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence               5788999999999999985 6678999888641     56899999999999999999999999999999999964

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=5.8e-17  Score=156.00  Aligned_cols=124  Identities=18%  Similarity=0.182  Sum_probs=103.8

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ..++|+.++..++.++++.|++...    .....     +. .|+||||+|+.+|+.+++++|++++..           
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~-----~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----------  163 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENGA----SVRIK-----DK-FNQIPLHRAASVGSLKLIELLCGLGKS-----------  163 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTC----CSCCC-----CT-TSCCHHHHHHHHTCHHHHHHHHTTTCC-----------
T ss_pred             cccccccccccchhhhhhhhhhhcc----ccccc-----CC-CCCCccchhhhcccccccccccccccc-----------
Confidence            3578999999999999999998632    22211     22 589999999999999999999999853           


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      ++|.+|..|.||||+|+.. +..++++.|++..     ||+++++|.+|+||||||+.   .+++++|+++++|
T Consensus       164 ~in~~d~~g~TpLh~A~~~-~~~~~v~~Ll~~~-----gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         164 AVNWQDKQGWTPLFHALAE-GHGDAAVLLVEKY-----GAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHHH-----CCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             cccccccccCCchhhhccc-ccHHHHHHHHHhc-----CCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            5788999999999999985 6788999998631     57899999999999999984   5799999999986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.6e-16  Score=162.65  Aligned_cols=125  Identities=19%  Similarity=0.145  Sum_probs=93.9

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      ||||.|+.+|..++|+.||+.+    .+++..     +. .|.||||+|+++|+.++|++||++|++            +
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g----~~in~~-----d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad------------i   59 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRG----ASPNVS-----NV-KVETPLHMAARAGHTEVAKYLLQNKAK------------V   59 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT----CCSCCS-----SS-CCCCHHHHHHHHTCHHHHHHHHHHTCC------------S
T ss_pred             ChHHHHHHCcCHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHCcCC------------C
Confidence            6999999999999999999853    444432     22 589999999999999999999999983            4


Q ss_pred             CCCCCCCChHHHHHHhcC--------------------------------------------------------------
Q 003109          673 NLAGPGGITPLHLAACTS--------------------------------------------------------------  690 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~--------------------------------------------------------------  690 (847)
                      |.++..|+||||+|+..+                                                              
T Consensus        60 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  139 (408)
T d1n11a_          60 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA  139 (408)
T ss_dssp             SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHH
Confidence            555666666666665532                                                              


Q ss_pred             ---CcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          691 ---DSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       691 ---g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                         +..++++.|+++      +++++.+|.+|.||||+|+.+|+.+++++|+.++++.
T Consensus       140 ~~~~~~~~v~~ll~~------~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~  191 (408)
T d1n11a_         140 AKYGKVRVAELLLER------DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP  191 (408)
T ss_dssp             HHTTCHHHHHHHHHT------TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS
T ss_pred             HHcCCHHHHHHHHHc------CCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcc
Confidence               233445555554      4567788888888888888888888888888876654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=5.8e-16  Score=146.89  Aligned_cols=126  Identities=17%  Similarity=0.191  Sum_probs=99.8

Q ss_pred             hhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCC----------------
Q 003109          604 CALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN--DTP----------------  665 (847)
Q Consensus       604 ~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~--~s~----------------  665 (847)
                      .+||+.||+.+.+    ++.    ..+. .|+||||+||++|+.++|++||.+|++...  ...                
T Consensus         2 ~~~v~~Ll~~g~d----in~----~~d~-~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~   72 (209)
T d1ot8a_           2 AQVISDLLAQGAE----LNA----TMDK-TGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVF   72 (209)
T ss_dssp             HHHHHHHHHHHHH----HHH----HHHH-HCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHCCCC----cCc----CcCC-CCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccc
Confidence            4789999998654    221    1133 599999999999999999999999985311  000                


Q ss_pred             ----------------C---------------------CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCC
Q 003109          666 ----------------Q---------------------KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGP  708 (847)
Q Consensus       666 ----------------~---------------------~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGa  708 (847)
                                      .                     .+..+++.++..|.||||+|+.. +...++..|+..      
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~-~~~~~~~~l~~~------  145 (209)
T d1ot8a_          73 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV-NNTEAVNILLMH------  145 (209)
T ss_dssp             HHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHT-TCHHHHHHHHHT------
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhccc-Ccceeeeeeccc------
Confidence                            0                     01235688999999999999985 677789988887      


Q ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          709 SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       709 gA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++++|.+|.+|.||||+|+..|+.+++++|++++++.
T Consensus       146 ~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~  182 (209)
T d1ot8a_         146 HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR  182 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccccccccccccchhccccHHHHHHHHHHCCCCC
Confidence            4578999999999999999999999999999988764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.1e-16  Score=149.51  Aligned_cols=131  Identities=18%  Similarity=0.139  Sum_probs=101.3

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      .+++|++|+.+|..++++.|+.......    ...........|.||||.|+..++.+++++|+..|+.           
T Consensus        72 g~t~l~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~-----------  136 (221)
T d1iknd_          72 GNTPLHLACEQGCLASVGVLTQSCTTPH----LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-----------  136 (221)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTS----SSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-----------
T ss_pred             cccccccccccccccccchhhhhccccc----ccccccccccccchhhhHHhhcCChhheeeecccCcc-----------
Confidence            3578889999888888888887543211    1111111122478999999999999999999988873           


Q ss_pred             CCCC-CCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          671 PPNL-AGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       671 d~na-~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                       .+. .+.+|.||||+|+.. |..+++++|+++      |||+|++|.+|+||||+|+.+|+.+++++|.+...+
T Consensus       137 -~~~~~~~~G~T~L~~A~~~-g~~~~v~~Ll~~------gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         137 -VNAQEPCNGRTALHLAVDL-QNPDLVSLLLKC------GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             -TTCCCTTTCCCHHHHHHHT-TCHHHHHHHHTT------TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             -cccccccCCCCcccccccc-ccHHHHHHHHhc------CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence             344 356799999999985 677899999987      578999999999999999999999999999887654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.61  E-value=3e-17  Score=172.88  Aligned_cols=132  Identities=11%  Similarity=0.070  Sum_probs=102.2

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  669 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l  669 (847)
                      ..+++|++|+++|+.++++.+-- +...+.+++..     +. .|+||||+||++||.++|++|+++|+           
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~-L~~~~~~in~~-----~~-~g~taL~~Aa~~G~~~~v~~Ll~~g~-----------  150 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCL-LLTSDEIVKVI-----QA-ENYQAFRLAAENGHLHVLNRLCELAP-----------  150 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTT-C--CCSSCC-------CH-HHHHHHHHHHHTTCHHHHHHHHHSCT-----------
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHH-HHhCCCccccc-----CC-CCCCHHHHHHHCCCHHHHHHHHHcCC-----------
Confidence            45799999999999988876422 12234455433     33 58999999999999999999999998           


Q ss_pred             CCCCCCC--CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCC-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          670 FPPNLAG--PGGITPLHLAACTSDSDDIIDALTNDPQEIGP-SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       670 ~d~na~d--~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGa-gA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                       +++..+  ..|.||||+||. .|+.+|+++|++.    |+ ..+.+..+.+|.||+|+|+++||.+++++|++++++.
T Consensus       151 -~~~~~~~~~~g~t~L~~Aa~-~g~~~iv~~Ll~~----~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         151 -TEIMAMIQAENYHAFRLAAE-NGHLHVLNRLCEL----APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             -TTHHHHHSHHHHHHHHHHHH-TTCHHHHHHHHHS----CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             -CccccccccCCCChhHHHHH-HhhHHHHHHHHHc----CCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence             456654  469999999998 5788899999987    21 1124556677889999999999999999999887654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.59  E-value=4.5e-17  Score=159.96  Aligned_cols=120  Identities=14%  Similarity=0.102  Sum_probs=96.4

Q ss_pred             HHHHHHHh-cCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHH--------HcCCCCCCC
Q 003109          593 FLLVFSVD-RGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLI--------HYSLTSSND  663 (847)
Q Consensus       593 ~LL~FAvd-rGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL--------~~GA~~~~~  663 (847)
                      +|||+++. .|..++++.|.+.    +++..       +...|+||||+||.+|+.++|++||        +.||     
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~----~~n~~-------~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Ga-----   65 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRE----SVNII-------DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-----   65 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTT----TTTTC-------CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-----
T ss_pred             ChHHHHHHhCCCHHHHHHHHhc----CCCcC-------CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCC-----
Confidence            46776554 4566666666553    23222       2225899999999999999999886        4566     


Q ss_pred             CCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003109          664 TPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  742 (847)
Q Consensus       664 s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~  742 (847)
                             ++|.+|..|.||||+|+.. |..+++++|+++      ||++|.+|.+|.||||+|...|+.++++++....
T Consensus        66 -------dvn~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~------Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  130 (277)
T d2fo1e1          66 -------DVNAMDCDENTPLMLAVLA-RRRRLVAYLMKA------GADPTIYNKSERSALHQAAANRDFGMMVYMLNST  130 (277)
T ss_dssp             -------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             -------CccccCCCCCeeecccccc-cccccccccccc------ccccccccccccccccchhhhcchhhhhhhhhcc
Confidence                   6899999999999999985 678899999998      5789999999999999999999999998887653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.7e-16  Score=139.94  Aligned_cols=92  Identities=16%  Similarity=0.084  Sum_probs=82.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 003109          634 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  713 (847)
Q Consensus       634 g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vn  713 (847)
                      +.++||+||++|+.++|++||++|+            ++|.++..|.||||+|+  .|+.+++++|+++      ++++|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~ga------------d~n~~~~~g~t~l~~a~--~g~~~~v~~Ll~~------ga~~~   62 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGA------------NPNAPNSYGRRPIQVMM--MGSARVAELLLLH------GAEPN   62 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTC------------CTTCCCSSSCCTTTSSC--TTCHHHHHHHHTT------TCCCC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCC------------ccccccccccccccccc--ccccccccccccc------ccccc
Confidence            4589999999999999999999998            67999999999999775  3678899999998      57899


Q ss_pred             cCCCCCC-CHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          714 ILDASGH-SPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       714 arD~~G~-TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      .+|..|. ||||+|+++|+.+++++|++++++.
T Consensus        63 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~   95 (125)
T d1bi7b_          63 CADPATLTRPVHDAAREGFLDTLVVLHRAGARL   95 (125)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            9999887 6999999999999999999998764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=3.7e-15  Score=152.65  Aligned_cols=101  Identities=14%  Similarity=0.030  Sum_probs=77.8

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCC------cHHHHHHHhCCCC--
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSD------SDDIIDALTNDPQ--  704 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g------~e~VveLLL~~p~--  704 (847)
                      .|+||||+||+.|+.+||++||++||            +++.+|..|+||||+|+..++      .++++++|.....  
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~ga------------d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHGS------------NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC------------CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCC------------CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            58999999999999999999999999            578888889999998886321      1334444332100  


Q ss_pred             -CCCC----------------------------------------------------------------------CCCCc
Q 003109          705 -EIGP----------------------------------------------------------------------SSWNS  713 (847)
Q Consensus       705 -~vGa----------------------------------------------------------------------gA~vn  713 (847)
                       .-|.                                                                      +..+|
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  253 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  253 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCcc
Confidence             0000                                                                      00168


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          714 ILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       714 arD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      ++|.+|+||||+|+++|+.++|++|++++++.
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~  285 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVDALLDYGADP  285 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999999999999999999999999999876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.9e-16  Score=148.81  Aligned_cols=130  Identities=18%  Similarity=0.111  Sum_probs=88.4

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 003109          593 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  672 (847)
Q Consensus       593 ~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~  672 (847)
                      +|||+|+..|..+++++|++.    +++.+..     + ..|.||||+|+.+++.++++.|++.+...      ......
T Consensus        41 TpLh~A~~~~~~~iv~~L~~~----g~d~~~~-----d-~~g~t~l~~~~~~~~~~~~~~l~~~~~~~------~~~~~~  104 (221)
T d1iknd_          41 TPLHLAVITNQPEIAEALLGA----GCDPELR-----D-FRGNTPLHLACEQGCLASVGVLTQSCTTP------HLHSIL  104 (221)
T ss_dssp             CHHHHHHHTTCHHHHHCCCSC----CCCSCCC-----C-TTCCCHHHHHHHHTCHHHHHHHHHSTTTT------SSSCGG
T ss_pred             ccccccccccccccccccccc----ccccccc-----c-cccccccccccccccccccchhhhhcccc------cccccc
Confidence            666666666666666666553    2232211     1 13566666666666666666666665421      111234


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          673 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD-ASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       673 na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD-~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +.....|.||||+|+.. +..+++.+|+..      +++++..+ .+|.||||+|++.|+.+++++|++++++-
T Consensus       105 ~~~~~~~~t~l~~a~~~-~~~~~~~~l~~~------~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~  171 (221)
T d1iknd_         105 KATNYNGHTCLHLASIH-GYLGIVELLVSL------GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV  171 (221)
T ss_dssp             GCCCTTCCCHHHHHHHT-TCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS
T ss_pred             cccccccchhhhHHhhc-CChhheeeeccc------CcccccccccCCCCccccccccccHHHHHHHHhcCCcc
Confidence            55667799999999885 667788888876      35566665 57999999999999999999999987765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.4e-14  Score=131.57  Aligned_cols=96  Identities=19%  Similarity=0.102  Sum_probs=76.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCC-----------
Q 003109          636 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQ-----------  704 (847)
Q Consensus       636 TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~-----------  704 (847)
                      ||||.||+.|+.++|++||++|++            ++ ++..|+||||+|+.. +..+++..++..+.           
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~------------~~-~~~~g~t~L~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   69 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAP------------FT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDARTKVDRT   69 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCC------------CC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCCCTTCCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCC------------cc-cccCCCccccccccc-ccccccccccccccccccccccccc
Confidence            999999999999999999999983            33 578889999999875 44445544443322           


Q ss_pred             ----------------CCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          705 ----------------EIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       705 ----------------~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                                      ..-.+++.+.+|.+|.||||+|+..|+.+++++|++++++-
T Consensus        70 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~  126 (153)
T d1awcb_          70 PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV  126 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCC
Confidence                            00114578999999999999999999999999999998764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=4.4e-15  Score=152.07  Aligned_cols=121  Identities=22%  Similarity=0.117  Sum_probs=86.3

Q ss_pred             hhhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCC-------HHHHHHHHHcCC--CC
Q 003109          590 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC-------RRMVDLLIHYSL--TS  660 (847)
Q Consensus       590 R~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~-------~eIVeLLL~~GA--~~  660 (847)
                      ..+++||+|+..|+.++|+.||+..    ++++..     +. .|+||||+||..++       .+++++|.....  +.
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~g----ad~~~~-----d~-~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~  175 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHG----SNRLYG-----DN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS  175 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTT----CCTTBC-----CT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCC----CCCCcC-----Cc-ccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccc
Confidence            4569999999999999999999853    444433     23 48899999997664       244444432111  00


Q ss_pred             CCCCC-----------------------------------------------C---C-------------c--CCCCCCC
Q 003109          661 SNDTP-----------------------------------------------Q---K-------------Y--IFPPNLA  675 (847)
Q Consensus       661 ~~~s~-----------------------------------------------~---~-------------~--l~d~na~  675 (847)
                      .+.+.                                               .   .             +  ...+|++
T Consensus       176 ~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~  255 (301)
T d1sw6a_         176 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ  255 (301)
T ss_dssp             TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCC
T ss_pred             ccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCC
Confidence            00000                                               0   0             0  0027999


Q ss_pred             CCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHH
Q 003109          676 GPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYAL  727 (847)
Q Consensus       676 d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa  727 (847)
                      |..|+||||+||.. |+.+++++|+++      ||+++.+|++|.||||||+
T Consensus       256 D~~G~TpLh~A~~~-g~~~iv~~Ll~~------GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         256 DSNGDTCLNIAARL-GNISIVDALLDY------GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTSCCHHHHHHHH-CCHHHHHHHHHT------TCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHcC
Confidence            99999999999986 677899999998      6789999999999999996

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-14  Score=134.20  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=96.5

Q ss_pred             hhHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 003109          591 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  670 (847)
Q Consensus       591 ~k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~  670 (847)
                      ...+|+.+.........+.|......    ....     ....+.++||.|++.+...+++.++++|.            
T Consensus       110 ~~~~l~~~~~~~~~~~~~~l~~~~~~----~~~~-----~~~~~~~~l~~a~~~~~~~~~~~~~~~~~------------  168 (228)
T d1k1aa_         110 GLTALHVAVNTECQETVQLLLERGAD----IDAV-----DIKSGRSPLIHAVENNSLSMVQLLLQHGA------------  168 (228)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCC----TTCC-----CTTTCCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             cccccccccccccchhhhhhhccccc----cccc-----cccchhhHHHHHHHhhhhhhhhhhhhhcc------------
Confidence            35788888888888777777664221    1111     12258899999999999999999999987            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHH
Q 003109          671 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNK  736 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIe  736 (847)
                      +.+.+|..|.||||+||.. |..+++++|+++      |||+|++|.+|.||||||+++|+.++|+
T Consensus       169 ~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~------Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         169 NVNAQMYSGSSALHSASGR-GLLPLVRTLVRS------GADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             ccccccccCcchHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            4678899999999999986 677899999998      5789999999999999999999988874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3e-14  Score=129.77  Aligned_cols=90  Identities=16%  Similarity=0.038  Sum_probs=81.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccC
Q 003109          636 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  715 (847)
Q Consensus       636 TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnar  715 (847)
                      ++||+||++|+.++|++||++|+            ++|.+|..|+||||+|+.  ++.+++++|+++      +++++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~------------d~n~~d~~g~TpL~~A~~--~~~ei~~~Ll~~------~a~~~~~   62 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV------------NVNAQNGFGRTALQVMKL--GNPEIARRLLLR------GANPDLK   62 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC------------CTTCCCTTSCCHHHHCCS--SCHHHHHHHHHT------TCCTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC------------CcCccCCccccccccccc--cccccccccccc------ccccccc
Confidence            89999999999999999999998            679999999999998863  567799999987      5789999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          716 DASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       716 D~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +.+|.|||++|+..|+..+++.|+++..+.
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~   92 (156)
T d1ihba_          63 DRTGFAVIHDAARAGFLDTLQTLLEFQADV   92 (156)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             cccCcccccccccccccccccccccccccc
Confidence            999999999999999999999998876543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.47  E-value=3.6e-15  Score=156.86  Aligned_cols=93  Identities=11%  Similarity=0.035  Sum_probs=77.8

Q ss_pred             cCchHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDL---LIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPS  709 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeL---LL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGag  709 (847)
                      .|.||||+|+++||.+++++   |+++|+            ++|.+|..|+||||+||. .|+.+||++|++.      |
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~------------~in~~~~~g~taL~~Aa~-~G~~~~v~~Ll~~------g  149 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDE------------IVKVIQAENYQAFRLAAE-NGHLHVLNRLCEL------A  149 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCS------------SCC--CHHHHHHHHHHHH-TTCHHHHHHHHHS------C
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCC------------cccccCCCCCCHHHHHHH-CCCHHHHHHHHHc------C
Confidence            57899999999999887765   788988            578999999999999998 5788999999987      4


Q ss_pred             CCCccCC--CCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          710 SWNSILD--ASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       710 A~vnarD--~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      ++++..|  .+|+||||+|+.+||.++|++|++++++
T Consensus       150 ~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~  186 (346)
T d2ajaa1         150 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT  186 (346)
T ss_dssp             TTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG
T ss_pred             CCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc
Confidence            6777776  4699999999999999999999987643

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.42  E-value=1.8e-13  Score=135.96  Aligned_cols=94  Identities=19%  Similarity=0.110  Sum_probs=85.7

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 003109          633 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       633 ~g~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      .+.|+||.||+.|+.++|++||++|+            ++|.+|..|+||||+|+.. |+.+++++|+++      +++.
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Ga------------dvn~~d~~G~T~L~~A~~~-g~~eiv~~Ll~~------~~~~   99 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGA------------DINYANVDGLTALHQACID-DNVDMVKFLVEN------GANI   99 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCC------------CTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCC------------CCCccCCCCCcHHHHHHhc-CCceeeeeeccc------cccc
Confidence            45699999999999999999999998            6899999999999999984 778899999998      4578


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      +..+..+.||||+|+..|+.++++.|++++...
T Consensus       100 ~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~  132 (291)
T d1s70b_         100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV  132 (291)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             ccccccccccccccccccccchhhcccccCccc
Confidence            889999999999999999999999999887655

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=5.3e-13  Score=126.36  Aligned_cols=99  Identities=22%  Similarity=0.163  Sum_probs=81.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhc--CCcHHHHHHHhCCCCCCCCCCCC
Q 003109          635 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACT--SDSDDIIDALTNDPQEIGPSSWN  712 (847)
Q Consensus       635 ~TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~--~g~e~VveLLL~~p~~vGagA~v  712 (847)
                      ...|+.|++.++...+..++..|++...      .......+..|.||||+|+..  .+..+++++|+++      |+++
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~------~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~------gadi   74 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTE------KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN------SGNL   74 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTS------BCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH------CSCT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCC------CCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc------CCCh
Confidence            4568899999999999999999885310      112234567899999999974  2567899999987      5789


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 003109          713 SILDASGHSPYSYALMKNNHAYNKLVARKLADR  745 (847)
Q Consensus       713 narD~~G~TPLHyAa~~G~~eiIeLLl~K~a~~  745 (847)
                      |.+|.+|+||||||+.+|+.+++++|++++++.
T Consensus        75 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~  107 (154)
T d1dcqa1          75 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASI  107 (154)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             hhhhhhhccccccccccccccccccccccCccc
Confidence            999999999999999999999999999987764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.2e-12  Score=125.43  Aligned_cols=132  Identities=14%  Similarity=0.052  Sum_probs=102.2

Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHhccccCCCCcHHHHhhccCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCcCC
Q 003109          592 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHY-SLTSSNDTPQKYIF  670 (847)
Q Consensus       592 k~LL~FAvdrGw~AVVK~LLd~l~~g~vdid~~s~~~~~~l~g~TpLH~AV~~g~~eIVeLLL~~-GA~~~~~s~~~~l~  670 (847)
                      .+.|++|+.+|+..+++.++......................|.||||+|+++|+.+++++||++ |+            
T Consensus       106 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~------------  173 (285)
T d1wdya_         106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA------------  173 (285)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC------------
T ss_pred             CchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCC------------
Confidence            47899999999999999888864321111111111112233589999999999999999999976 55            


Q ss_pred             CCCCCCCCCChHHHHHH---hcCCcHHHHHHHhCCCCCCCCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 003109          671 PPNLAGPGGITPLHLAA---CTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  741 (847)
Q Consensus       671 d~na~d~~G~TPLHlAA---~~~g~e~VveLLL~~p~~vGagA~vnarD~~G~TPLHyAa~~G~~eiIeLLl~K  741 (847)
                      +++..+..|.++++.+.   ..++.+.+++.|++.      ++++|.+|..|.||||+|+..|+.+++++|+.+
T Consensus       174 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~------ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH------GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT------TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             CcccccCCCCcccccccccccchHHHHHHHHHHHC------CCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            67888999998888764   334556789999987      578999999999999999999999999998864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.7e-11  Score=111.44  Aligned_cols=90  Identities=24%  Similarity=0.188  Sum_probs=71.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCccC
Q 003109          636 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  715 (847)
Q Consensus       636 TpLH~AV~~g~~eIVeLLL~~GA~~~~~s~~~~l~d~na~d~~G~TPLHlAA~~~g~e~VveLLL~~p~~vGagA~vnar  715 (847)
                      +.||.||.+|+.++|+.||+.+.           +++|.+|..|.||||+|+.  +..++++.|+.+      +++++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~-----------~~~n~~d~~g~t~L~~A~~--~~~~~v~~Ll~~------~~~~~~~   64 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHREL-----------VHPDALNRFGKTALQVMMF--GSTAIALELLKQ------GASPNVQ   64 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTC-----------CCTTCCCTTSCCHHHHSCT--TCHHHHHHHHHT------TCCTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCC-----------CCCCccCCCCCcccccccc--cccccccccccc------ccccccc
Confidence            45999999999999999998743           1678888899999998864  345667777766      3567888


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 003109          716 DASGHSPYSYALMKNNHAYNKLVARKLAD  744 (847)
Q Consensus       716 D~~G~TPLHyAa~~G~~eiIeLLl~K~a~  744 (847)
                      +..|.+|+++|+..++.++++++++++.+
T Consensus        65 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~   93 (156)
T d1bd8a_          65 DTSGTSPVHDAARTGFLDTLKVLVEHGAD   93 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            88888888888888888888888877654