Citrus Sinensis ID: 003116

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840------

MHCIIFLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQDS

ccHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccHHHHHHHcccEEEcccccEEEEccccccEEEEEEEEEEEEEEEccccccccccccccccHHHHHHHccccccEEEEEEEEEEEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccEEEEcccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccEEEEcccccEEcccEEEEEEcccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEcccccccccccc

ccHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHcccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHEEEHcccHHHHHHHHHHHHHHcccccccccHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccHHHHcccHHHHHHHHHHccHHEcccccEEEEccccccEEEEEEEEEEEEEEcccccccccccccccccHHHHHHHHcccccEEEEEEEEEEEEEEEcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEccEEEEccccEEEEEEEEEEcccccEEEEccccEEcccccccccccccccccEEEEEcccccEEEEEEEEEEEEEEcccccccHHHccccccccccccccccccccHHccccccccccccccccccccHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEcccc

MHCIIFLAFIVFTRHLCCFFIFCSGVVIaegilgndkifqnhgnSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVkrssggsslitsetgtLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKtfgdlgddeelgpvdwptvKRYIRCLndlegvpmhphsasetgdsldptnlRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNelcdwrglkdnvsfpnyykflqtsmfpqklITYFTVERLEFACSICAAFLRAHKIARQQLHdfigdsgiASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKrllrnpplvkfpkisdlisahpllrelppsvreplelSTKEIMKLSGVtlyregskpsgiwLISNGVVKWtsksirnkhslhpvfthgsnlglyevligkpymsdmvtDSVVLCFFIESDKILSIlrsdpaveDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLrgeiieipyHCIGFLLEGFikthglqeelitppaalipsqgnlsfrsaetsgveavsFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSslfshssdqphkslsrehgnlmswpEHFYKARQQkqnseetdrKANSLSARAMQLSIFGNMVdvqrrsrsfatgtqtmqshslsfpsipshlnrrlvsvrsegattVREKLEvsrstgqipappsqnaganeshvidyssddsgaedelivridspsllsfpqds

MHCIIFLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKrssggsslitsetGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFktfgdlgddeelgpvdWPTVKRYIRCLNDLEGVpmhphsasetgdsldptNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKfpkisdlisahpllrelppsvreplelstKEIMKLSGVTlyregskpsgiwLISNGVVKWTSKSIRNKHslhpvfthgsnLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSSlfshssdqphkslsREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQtmqshslsfpsipshlNRRLVSVrsegattvreklevsrstgqipappsqnaganeSHVIDYSSDDSGAEDELivridspsllsfpqds

MHCIIFLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWsglrgavalslslsvkrssggsslITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQDS

**CIIFLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVK*****SSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGV*****************NLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLR**************KEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPS***L********GVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVR***********************************************************IF***********************************************************************************************************

MHCIIFLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLE********************LRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQG*************AVSFSHQGSCYLVETRARVIIFD*********************************************************************LSIFG*******************************************************************************************VRIDSPS**S*****

MHCIIFLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLS*********LITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMH**********LDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTS***************REHGNLMSWPEHFYK*****************LSARAMQLSIFGNMVDVQRRSRS*************SFPSIPSHLNRRLVSVRSEGATTVR**********************NESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQDS

MHCIIFLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEAD*******************************W**********************SLSA***************************************SHLNRRLVS************************************************DELIVRIDSPSLLSF****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		846	2.2.26 [Sep-21-2011]
Q9LKW9		1146	Sodium/hydrogen exchanger	yes	no	0.976	0.720	0.599	0.0
Q3YL57		756	Sodium/hydrogen exchanger	no	no	0.489	0.547	0.669	1e-161
Q6UJY2		1175	Sodium/hydrogen exchanger	yes	no	0.245	0.177	0.246	1e-07
Q5TAH2		1124	Sodium/hydrogen exchanger	yes	no	0.260	0.195	0.208	0.0003
Q01345		759	Na(+)/H(+) exchanger beta	N/A	no	0.152	0.169	0.268	0.0008

>sp\|Q9LKW9\|NHX7_ARATH Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1	Back alignment and function desciption

 Score =  993 bits (2567), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/846 (59%), Positives = 636/846 (75%), Gaps = 20/846 (2%)

Query: 6    FLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVG 65
            F   + +  +   F +  SGVVIAEGIL +DKI    GNSW +L LLY+++Q+SR+ VVG
Sbjct: 314  FWEMVAYIANTLIFIL--SGVVIAEGILDSDKI-AYQGNSWRFLFLLYVYIQLSRVVVVG 370

Query: 66   TLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFT 125
             LYP+L  FGYGL+WKE+IILVWSGLRGAVAL+LSLSVK+SSG S  I+ ETGTLF+FFT
Sbjct: 371  VLYPLLCRFGYGLDWKESIILVWSGLRGAVALALSLSVKQSSGNSH-ISKETGTLFLFFT 429

Query: 126  GGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELG 185
            GGIVFLTLIVNGSTTQ++L LL MD L A K+RIL+YTKYEMLN A + F DLGDDEELG
Sbjct: 430  GGIVFLTLIVNGSTTQFVLRLLRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDEELG 489

Query: 186  PVDWPTVKRYIRCLNDLEG-VPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLD 244
            P DWPTV+ YI  L   EG +  HPH+ S+ G SLDP +L+DIR+R LNGVQA YW MLD
Sbjct: 490  PADWPTVESYISSLKGSEGELVHHPHNGSKIG-SLDPKSLKDIRMRFLNGVQATYWEMLD 548

Query: 245  EGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFT 304
            EGRI++  ANILMQSVDE +D  S  LCDWRGLK +V+FPNYY FL + + P+KL+TYF 
Sbjct: 549  EGRISEVTANILMQSVDEALDQVSTTLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVTYFA 608

Query: 305  VERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNF 364
            VERLE AC I AAFLRAH IARQQL+DF+G+S I S+VI ES+ EGE+A+KFLE VR +F
Sbjct: 609  VERLESACYISAAFLRAHTIARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVRSSF 668

Query: 365  PQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVK 424
            PQVL VVKT+QVTYSVLNHL+ YI+NLEKVGLLEEKE+ HLHDAVQ+ LK+LLRNPP+VK
Sbjct: 669  PQVLRVVKTKQVTYSVLNHLLGYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRNPPIVK 728

Query: 425  FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 484
             PK+SD+I++HPL   LPP+  EPL+ S KE MKL GVTLY+EGSKP+G+WLI +G+VKW
Sbjct: 729  LPKLSDMITSHPLSVALPPAFCEPLKHSKKEPMKLRGVTLYKEGSKPTGVWLIFDGIVKW 788

Query: 485  TSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 544
             SK + N HSLHP F+HGS LGLYEVL GKPY+ D++TDS+VLCFFI+S+KILS L+SD 
Sbjct: 789  KSKILSNNHSLHPTFSHGSTLGLYEVLTGKPYLCDLITDSMVLCFFIDSEKILS-LQSDS 847

Query: 545  AVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA-ERSKMTTCLRGEIIEIPYHCIGF 603
             ++DFLWQ+SA+ L ++L PQIFE + MQ++RAL++ E SK+TT + GE IEI  + IG 
Sbjct: 848  TIDDFLWQESALVLLKLLRPQIFESVAMQELRALVSTESSKLTTYVTGESIEIDCNSIGL 907

Query: 604  LLEGFIKTHGLQEELITPPAALIPSQGNLSF-RSAETSGVEAVSFSHQGSCYLVETRARV 662
            LLEGF+K  G++EELI+ PAAL PS GN SF  S+E SG+  VSFS Q + Y+VETRAR 
Sbjct: 908  LLEGFVKPVGIKEELISSPAALSPSNGNQSFHNSSEASGIMRVSFSQQATQYIVETRARA 967

Query: 663  IIFDIAAFEADKAVVRRTSSLF---SHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNS 719
            IIF+I AF AD+ + RR SSL    S SSDQ  +S  +EH  LMSWPE+ Y  +QQ    
Sbjct: 968  IIFNIGAFGADRTLHRRPSSLTPPRSSSSDQLQRSFRKEHRGLMSWPENIYAKQQQ---- 1023

Query: 720  EETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVS 779
             E ++   SLS RAMQLSIFG+MV+V RRS SF          +L +  +P +  + LVS
Sbjct: 1024 -EINKTTLSLSERAMQLSIFGSMVNVYRRSVSFGGIYNNKLQDNLLYKKLPLNPAQGLVS 1082

Query: 780  VRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDSPSL 839
             +SE +   +++LE  +   Q+P    +   +   + +  SSD+   ++ ++VRIDSPS 
Sbjct: 1083 AKSESSIVTKKQLETRKHACQLPL---KGESSTRQNTMVESSDEEDEDEGIVVRIDSPSK 1139

Query: 840  LSFPQD 845
            + F  D
Sbjct: 1140 IVFRND 1145

Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q3YL57\|NHX8_ARATH Sodium/hydrogen exchanger 8 OS=Arabidopsis thaliana GN=NHX8 PE=2 SV=1	Back alignment and function description

>sp\|Q6UJY2\|SL9C1_MOUSE Sodium/hydrogen exchanger 10 OS=Mus musculus GN=Slc9c1 PE=1 SV=3	Back alignment and function description

>sp\|Q5TAH2\|SL9C2_HUMAN Sodium/hydrogen exchanger 11 OS=Homo sapiens GN=SLC9C2 PE=2 SV=1	Back alignment and function description

>sp\|Q01345\|NHEB_ONCMY Na(+)/H(+) exchanger beta OS=Oncorhynchus mykiss PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		846
261873420		1141	salt overly sensitive 1 [Vitis vinifera]	0.983	0.729	0.714	0.0
225424514		1141	PREDICTED: sodium/hydrogen exchanger 7 [	0.983	0.729	0.713	0.0
224111392		1129	sodium proton exchanger [Populus trichoc	0.966	0.724	0.715	0.0
99029169		1145	Na+/H+ antiporter [Populus euphratica]	0.965	0.713	0.712	0.0
255561775		1143	sodium/hydrogen exchanger plant, putativ	0.983	0.727	0.690	0.0
449464876		1144	PREDICTED: sodium/hydrogen exchanger 7-l	0.984	0.728	0.682	0.0
384368002		1143	uncharacterized protein LOC100789429 [Gl	0.975	0.721	0.681	0.0
302028367		1153	SOS1 [Bruguiera gymnorhiza]	0.982	0.720	0.670	0.0
380508732		1144	plasmalemma Na+/H+ antiporter [Cucumis s	0.984	0.728	0.682	0.0
269986105		1153	plasma membrane Na+/H+ antiporter [Zygop	0.978	0.718	0.656	0.0

>gi\|261873420\|gb\|ACY03274.1\| salt overly sensitive 1 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1215 bits (3144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/841 (71%), Positives = 700/841 (83%), Gaps = 9/841 (1%)

Query: 6    FLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVG 65
            F   + +  +   F +  SGVVIAEG+LG++ IF+NHGNSWGYLILLY++VQVSR+ VVG
Sbjct: 306  FWEMVAYIANTLIFIL--SGVVIAEGVLGSNDIFKNHGNSWGYLILLYVYVQVSRIVVVG 363

Query: 66   TLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFT 125
              YP L  FGYGL+WKEAIIL+WSGLRGAVALSLSLSVKR+S  SS ++SETGTLFVFFT
Sbjct: 364  VSYPFLWYFGYGLDWKEAIILIWSGLRGAVALSLSLSVKRASDSSSYLSSETGTLFVFFT 423

Query: 126  GGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELG 185
            GGIVFLTLIVNGSTTQ+ILHLL+MDKLS  KRRILDYTKYEMLN A + FGDLGDDEELG
Sbjct: 424  GGIVFLTLIVNGSTTQFILHLLNMDKLSEVKRRILDYTKYEMLNKALEAFGDLGDDEELG 483

Query: 186  PVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDE 245
            P DWPTVKRYI  LND+EG  +HPH+  E+ ++L PTNL+DIRIRLLNGVQAAYW MLDE
Sbjct: 484  PADWPTVKRYIASLNDVEGGLVHPHTVYESDNNLYPTNLKDIRIRLLNGVQAAYWRMLDE 543

Query: 246  GRITQTAANILMQSVDEGIDLASNE-LCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFT 304
            GRITQT AN+LMQSVDE +DL S+E LCDW+GLK NV+FPNYY+FLQTS+ PQKLITYFT
Sbjct: 544  GRITQTTANLLMQSVDEALDLVSDEPLCDWKGLKANVNFPNYYRFLQTSICPQKLITYFT 603

Query: 305  VERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNF 364
            VERLE AC ICAAFLRAH+IAR+QL DFIGDS IAS VI ES+ EGE+ARKFLEDVRV F
Sbjct: 604  VERLESACYICAAFLRAHRIARRQLLDFIGDSEIASTVINESEAEGEEARKFLEDVRVTF 663

Query: 365  PQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVK 424
            PQVL VVKTRQVT+SVL HLIDY+QNLEK+GLLEEKEM HLHDAVQ+DLK+LLRNPPLVK
Sbjct: 664  PQVLRVVKTRQVTHSVLLHLIDYVQNLEKIGLLEEKEMFHLHDAVQTDLKKLLRNPPLVK 723

Query: 425  FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 484
             P++ D+I+ HPLL  LP +VREPLE STKEIMK+ GV LYREGSKPSGIWLIS+GVVKW
Sbjct: 724  IPRMCDMITTHPLLGALPSAVREPLESSTKEIMKVRGVALYREGSKPSGIWLISSGVVKW 783

Query: 485  TSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 544
             SKSIRNKHSL P FTHGS LGLYEVLIGKPY+SDM+TDSVVLCFF+E+DKI+S+LRSDP
Sbjct: 784  ASKSIRNKHSLRPTFTHGSTLGLYEVLIGKPYISDMITDSVVLCFFVETDKIMSMLRSDP 843

Query: 545  AVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFL 604
            AVEDFLWQ+SAI L+++LLPQIFEK+ MQD+RAL+AE+S MT  + GE IEIP++ IGFL
Sbjct: 844  AVEDFLWQESAIVLAKLLLPQIFEKMAMQDLRALVAEKSIMTIYISGETIEIPHYSIGFL 903

Query: 605  LEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVII 664
            L+GFIK    QEELIT PAAL+PS  NLSFRS +TSG +    SHQGS Y V+TRARVII
Sbjct: 904  LDGFIKG---QEELITYPAALMPSH-NLSFRSLDTSGAKVAGSSHQGSPYQVQTRARVII 959

Query: 665  FDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNSEETDR 724
            FDI+AFEAD+ + RR+SSL  HS+DQP +SLSREHG+LMSWPEHFYK RQ  Q++E    
Sbjct: 960  FDISAFEADRGLQRRSSSLVPHSADQPSRSLSREHGDLMSWPEHFYKLRQDNQSTEGDRW 1019

Query: 725  KANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVSVRSEG 784
            K+NSLS +AMQLSIFG+MV   +  RSF + ++   SHSLS+P +P+     LVSVRSEG
Sbjct: 1020 KSNSLSYKAMQLSIFGSMVGTHQHIRSFQS-SRVKPSHSLSYPRVPTTHAPPLVSVRSEG 1078

Query: 785  ATTVREKLEVSRSTGQIPAPPSQNAG-ANESHVIDYSSDDSGAEDELIVRIDSPSLLSFP 843
              T R  +++ + TGQ   PP Q      E+H +D SS++SG EDEL+VRIDSPS LSF 
Sbjct: 1079 PATARRGIDMGKLTGQNLKPPLQGTPHTKETHEVDDSSEESGVEDELLVRIDSPSKLSFH 1138

Query: 844  Q 844
            Q
Sbjct: 1139 Q 1139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225424514\|ref\|XP_002285248.1\| PREDICTED: sodium/hydrogen exchanger 7 [Vitis vinifera] gi\|297737560\|emb\|CBI26761.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224111392\|ref\|XP_002315837.1\| sodium proton exchanger [Populus trichocarpa] gi\|222864877\|gb\|EEF02008.1\| sodium proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|99029169\|gb\|ABF60872.1\| Na+/H+ antiporter [Populus euphratica]	Back alignment and taxonomy information

>gi\|255561775\|ref\|XP_002521897.1\| sodium/hydrogen exchanger plant, putative [Ricinus communis] gi\|223538935\|gb\|EEF40533.1\| sodium/hydrogen exchanger plant, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449464876\|ref\|XP_004150155.1\| PREDICTED: sodium/hydrogen exchanger 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|384368002\|ref\|NP_001244939.1\| uncharacterized protein LOC100789429 [Glycine max] gi\|380513814\|gb\|AFD64746.1\| SOS1 [Glycine max]	Back alignment and taxonomy information

>gi\|302028367\|gb\|ADK91080.1\| SOS1 [Bruguiera gymnorhiza]	Back alignment and taxonomy information

>gi\|380508732\|gb\|AFD64618.1\| plasmalemma Na+/H+ antiporter [Cucumis sativus]	Back alignment and taxonomy information

>gi\|269986105\|gb\|ACZ57357.1\| plasma membrane Na+/H+ antiporter [Zygophyllum xanthoxylum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		846
TAIR\|locus:2041100		1146	SOS1 "SALT OVERLY SENSITIVE 1"	0.976	0.720	0.579	2.7e-251
TAIR\|locus:2006762		756	NHX8 "Na+/H+ exchanger 8" [Ara	0.489	0.547	0.624	3.2e-136
UNIPROTKB\|F1PLJ2		1086	SLC9C1 "Uncharacterized protei	0.244	0.190	0.25	6.8e-10
MGI\|MGI:2685456		1175	Slc9c1 "solute carrier family	0.244	0.176	0.231	3.7e-09
UNIPROTKB\|F1M7D9		1177	Slc9a10 "Protein Slc9a10" [Rat	0.244	0.175	0.231	1.1e-08
UNIPROTKB\|F1MQF9		1137	SLC9A10 "Uncharacterized prote	0.327	0.243	0.216	2e-06
UNIPROTKB\|Q5TAH2		1124	SLC9C2 "Sodium/hydrogen exchan	0.260	0.195	0.191	1.5e-05
RGD\|1309075		883	Slc9c1 "solute carrier family	0.244	0.234	0.231	5.2e-05
UNIPROTKB\|F1PLH9		723	SLC9C1 "Uncharacterized protei	0.244	0.286	0.25	6.2e-05
UNIPROTKB\|Q4G0N8		1177	SLC9C1 "Sodium/hydrogen exchan	0.260	0.186	0.193	8.3e-05

TAIR\|locus:2041100 SOS1 "SALT OVERLY SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2420 (856.9 bits), Expect = 2.7e-251, P = 2.7e-251
 Identities = 490/846 (57%), Positives = 618/846 (73%)

Query:     6 FLAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVG 65
             F   + +  +   F +  SGVVIAEGIL +DKI    GNSW +L LLY+++Q+SR+ VVG
Sbjct:   314 FWEMVAYIANTLIFIL--SGVVIAEGILDSDKIAYQ-GNSWRFLFLLYVYIQLSRVVVVG 370

Query:    66 TLYPVLRNFGYGLEWKEAIILVWXXXXXXXXXXXXXXXXXXXXXXXXITSETGTLFVFFT 125
              LYP+L  FGYGL+WKE+IILVW                        I+ ETGTLF+FFT
Sbjct:   371 VLYPLLCRFGYGLDWKESIILVWSGLRGAVALALSLSVKQSSGNSH-ISKETGTLFLFFT 429

Query:   126 GGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELG 185
             GGIVFLTLIVNGSTTQ++L LL MD L A K+RIL+YTKYEMLN A + F DLGDDEELG
Sbjct:   430 GGIVFLTLIVNGSTTQFVLRLLRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDEELG 489

Query:   186 PVDWPTVKRYIRCLNDLEG-VPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLD 244
             P DWPTV+ YI  L   EG +  HPH+ S+ G SLDP +L+DIR+R LNGVQA YW MLD
Sbjct:   490 PADWPTVESYISSLKGSEGELVHHPHNGSKIG-SLDPKSLKDIRMRFLNGVQATYWEMLD 548

Query:   245 EGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFT 304
             EGRI++  ANILMQSVDE +D  S  LCDWRGLK +V+FPNYY FL + + P+KL+TYF 
Sbjct:   549 EGRISEVTANILMQSVDEALDQVSTTLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVTYFA 608

Query:   305 VERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNF 364
             VERLE AC I AAFLRAH IARQQL+DF+G+S I S+VI ES+ EGE+A+KFLE VR +F
Sbjct:   609 VERLESACYISAAFLRAHTIARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVRSSF 668

Query:   365 PQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVK 424
             PQVL VVKT+QVTYSVLNHL+ YI+NLEKVGLLEEKE+ HLHDAVQ+ LK+LLRNPP+VK
Sbjct:   669 PQVLRVVKTKQVTYSVLNHLLGYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRNPPIVK 728

Query:   425 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 484
              PK+SD+I++HPL   LPP+  EPL+ S KE MKL GVTLY+EGSKP+G+WLI +G+VKW
Sbjct:   729 LPKLSDMITSHPLSVALPPAFCEPLKHSKKEPMKLRGVTLYKEGSKPTGVWLIFDGIVKW 788

Query:   485 TSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 544
              SK + N HSLHP F+HGS LGLYEVL GKPY+ D++TDS+VLCFFI+S+KILS L+SD 
Sbjct:   789 KSKILSNNHSLHPTFSHGSTLGLYEVLTGKPYLCDLITDSMVLCFFIDSEKILS-LQSDS 847

Query:   545 AVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA-ERSKMTTCLRGEIIEIPYHCIGF 603
              ++DFLWQ+SA+ L ++L PQIFE + MQ++RAL++ E SK+TT + GE IEI  + IG 
Sbjct:   848 TIDDFLWQESALVLLKLLRPQIFESVAMQELRALVSTESSKLTTYVTGESIEIDCNSIGL 907

Query:   604 LLEGFIKTHGLQEELITPPAALIPSQGNLSFR-SAETSGVEAVSFSHQGSCYLVETRARV 662
             LLEGF+K  G++EELI+ PAAL PS GN SF  S+E SG+  VSFS Q + Y+VETRAR 
Sbjct:   908 LLEGFVKPVGIKEELISSPAALSPSNGNQSFHNSSEASGIMRVSFSQQATQYIVETRARA 967

Query:   663 IIFDIAAFEADKAVVRRTSSLF---SHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNS 719
             IIF+I AF AD+ + RR SSL    S SSDQ  +S  +EH  LMSWPE+ Y A+QQ    
Sbjct:   968 IIFNIGAFGADRTLHRRPSSLTPPRSSSSDQLQRSFRKEHRGLMSWPENIY-AKQQ---- 1022

Query:   720 EETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVS 779
             +E ++   SLS RAMQLSIFG+MV+V RRS SF          +L +  +P +  + LVS
Sbjct:  1023 QEINKTTLSLSERAMQLSIFGSMVNVYRRSVSFGGIYNNKLQDNLLYKKLPLNPAQGLVS 1082

Query:   780 VRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDSPSL 839
              +SE +   +++LE  +   Q+P     +   N   +++ SSD+   ++ ++VRIDSPS 
Sbjct:  1083 AKSESSIVTKKQLETRKHACQLPLKGESSTRQNT--MVE-SSDEEDEDEGIVVRIDSPSK 1139

Query:   840 LSFPQD 845
             + F  D
Sbjct:  1140 IVFRND 1145

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006812 "cation transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=ISS;RCA;IMP

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0010163 "high-affinity potassium ion import" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042542 "response to hydrogen peroxide" evidence=IEP;IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR\|locus:2006762 NHX8 "Na+/H+ exchanger 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PLJ2 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:2685456 Slc9c1 "solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1M7D9 Slc9a10 "Protein Slc9a10" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MQF9 SLC9A10 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5TAH2 SLC9C2 "Sodium/hydrogen exchanger 11" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1309075 Slc9c1 "solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PLH9 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4G0N8 SLC9C1 "Sodium/hydrogen exchanger 10" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LKW9	NHX7_ARATH	No assigned EC number	0.5992	0.9763	0.7207	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.6267.1	sodium proton exchanger (1129 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		846
COG0025		429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	5e-09
pfam00027		91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	1e-06
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	1e-06
TIGR00840		559	TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	2e-06
COG0664		214	COG0664, Crp, cAMP-binding proteins - catabolite g	2e-04
cd00038		115	cd00038, CAP_ED, effector domain of the CAP family	0.001

>gnl\|CDD\|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

 Score = 59.2 bits (144), Expect = 5e-09
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 46  WGYLILLYIFVQVSRLF-VVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVK 104
              L++  + V ++R   V  +L          L W+E + L W+G RG V+L+L+L + 
Sbjct: 309 LLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPRGVVSLALALLIP 368

Query: 105 RSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILD 161
                   +      L +F    ++  +L+V G T   +   L++ + SA  + IL 
Sbjct: 369 ------LELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAKEILG 419

Length = 429

>gnl\|CDD\|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain	Back alignment and domain information

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	Back alignment and domain information

>gnl\|CDD\|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		846
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.95
PRK09392		236	ftrB transcriptional activator FtrB; Provisional	99.83
KOG1113		368	consensus cAMP-dependent protein kinase types I an	99.82
KOG0498		727	consensus K+-channel ERG and related proteins, con	99.79
PRK11753		211	DNA-binding transcriptional dual regulator Crp; Pr	99.78
KOG0614		732	consensus cGMP-dependent protein kinase [Signal tr	99.75
PRK10402		226	DNA-binding transcriptional activator YeiL; Provis	99.74
PRK11161		235	fumarate/nitrate reduction transcriptional regulat	99.74
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.73
PLN03192		823	Voltage-dependent potassium channel; Provisional	99.71
TIGR03697		193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.7
PRK13918		202	CRP/FNR family transcriptional regulator; Provisio	99.66
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	99.66
PRK09391		230	fixK transcriptional regulator FixK; Provisional	99.65
COG0664		214	Crp cAMP-binding proteins - catabolite gene activa	99.64
KOG0500		536	consensus Cyclic nucleotide-gated cation channel C	99.58
cd00038		115	CAP_ED effector domain of the CAP family of transc	99.57
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.54
PF00027		91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.5
KOG0499		815	consensus Cyclic nucleotide-gated cation channel C	99.49
COG2905		610	Predicted signal-transduction protein containing c	99.48
smart00100		120	cNMP Cyclic nucleotide-monophosphate binding domai	99.46
PLN02868		413	acyl-CoA thioesterase family protein	99.35
KOG0614		732	consensus cGMP-dependent protein kinase [Signal tr	99.33
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	99.09
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.06
KOG1113		368	consensus cAMP-dependent protein kinase types I an	98.95
PRK05326		562	potassium/proton antiporter; Reviewed	98.88
KOG0501		971	consensus K+-channel KCNQ [Inorganic ion transport	98.67
KOG2968		1158	consensus Predicted esterase of the alpha-beta hyd	98.57
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	98.13
PRK11832		207	putative DNA-binding transcriptional regulator; Pr	97.72
KOG2968		1158	consensus Predicted esterase of the alpha-beta hyd	97.61
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	97.43
PF04831		153	Popeye: Popeye protein conserved region; InterPro:	97.33
KOG3542		1283	consensus cAMP-regulated guanine nucleotide exchan	96.37
KOG3542		1283	consensus cAMP-regulated guanine nucleotide exchan	91.59
PF13545		76	HTH_Crp_2: Crp-like helix-turn-helix domain; PDB:	84.91

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

Probab=99.95  E-value=8.3e-27  Score=272.25  Aligned_cols=251  Identities=15%  Similarity=0.129  Sum_probs=184.3

Q ss_pred             HHHHHHHHHhhHHhhhhhhhcchhhhcccccccc--cCchhH---HHHHHHHHHHHHHHHHHHHHh--HHHhhhcCCCCC
Q 003116            7 LAFIVFTRHLCCFFIFCSGVVIAEGILGNDKIFQ--NHGNSW---GYLILLYIFVQVSRLFVVGTL--YPVLRNFGYGLE   79 (846)
Q Consensus         7 ~a~~~~~~~ln~lIFillGl~i~~~il~~~~~~~--~~~~~~---~~~l~l~v~v~~~R~l~v~~l--~p~l~~~~~~~~   79 (846)
                      ..|..+.+.+|+++|+++|++++..+........  .....+   .+++++|..+.++|++|++..  .+..++.+.+++
T Consensus       262 ~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  341 (525)
T TIGR00831       262 DFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFG  341 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence            4555566666999999999999873322110000  000112   225667777888999877642  223334456789


Q ss_pred             cceeeeeeeccchhHHHHHHhhhhcccCCCCCcccccccceehhhhhhHHHhhhhhccccHHHHHHhcCCCCCcHHHHHH
Q 003116           80 WKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRI  159 (846)
Q Consensus        80 ~r~~~vl~wgGLRGAVsLALALsvp~~~~~~~~~~~~~r~lilf~~~gVvllTLli~G~Tl~~L~r~Lgl~~~s~~~~~~  159 (846)
                      ||+.++++|+|+||+||+|+|+++|...++|.+||  .|+.++|++++||++|+++||+|+|+++|++|+++.++. +..
T Consensus       342 ~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p--~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e  418 (525)
T TIGR00831       342 TRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFP--ARYELVFLAAGVILFSLLVQGISLPIFVKRKFVSEHSER-ELE  418 (525)
T ss_pred             hhhHHHheeccchHHHHHHHHHHccccccCCCCCc--hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCCChh-hHH
Confidence            99999999999999999999999998877777788  489999999999999999999999999999999887654 344


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCCCCChHHH-HHHHHHhhhccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 003116          160 LDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTV-KRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAA  238 (846)
Q Consensus       160 ~~~~~~~~~~~a~~~l~~l~~d~~l~~a~~~~v-~~y~~~l~~~e~~~~~~~~~~~~~~~~~~~~l~~~R~r~L~~er~~  238 (846)
                      +..++..+.+++++.++++.++...+++..+.+ ++|..++++.+.+.   ....+ +...+.+...++|++++++||+.
T Consensus       419 ~~~a~~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~er~~  494 (525)
T TIGR00831       419 EIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRADG---EEKIR-SGMGEKNLRRRARLYVLDAKRSA  494 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhc---ccchh-hhhhhhhHHHHHHHHHHHHHHHH
Confidence            677888999999999998877665544444444 67877766543221   11000 00011123557899999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhh
Q 003116          239 YWAMLDEGRITQTAANILMQSVDEGI  264 (846)
Q Consensus       239 ~~~~~~~G~Is~~~~~~L~~~ld~~l  264 (846)
                      +.+++++|.||+++++.+++.+|...
T Consensus       495 l~~~~~~~~i~~~~~~~~~~~ld~~e  520 (525)
T TIGR00831       495 VVDLRAGGLISQEVLLELMRELDLKE  520 (525)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHhhHHH
Confidence            99999999999999999999998754

This model is specific for the bacterial members of this family.

>PRK09392 ftrB transcriptional activator FtrB; Provisional	Back alignment and domain information

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional	Back alignment and domain information

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional	Back alignment and domain information

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional	Back alignment and domain information

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial	Back alignment and domain information

>PRK13918 CRP/FNR family transcriptional regulator; Provisional	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK09391 fixK transcriptional regulator FixK; Provisional	Back alignment and domain information

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	Back alignment and domain information

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]	Back alignment and domain information

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	Back alignment and domain information

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain	Back alignment and domain information

>PLN02868 acyl-CoA thioesterase family protein	Back alignment and domain information

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>PRK11832 putative DNA-binding transcriptional regulator; Provisional	Back alignment and domain information

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle	Back alignment and domain information

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]	Back alignment and domain information

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]	Back alignment and domain information

>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		846
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2pqq_A		149	Putative transcriptional regulator; APC7345, strep	2e-07
3d0s_A		227	Transcriptional regulatory protein; CAMP receptor	3e-07
3mdp_A		142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	9e-07
3gyd_A		187	CNMP-BD protein, cyclic nucleotide-binding domain;	1e-06
4ev0_A		216	Transcription regulator, CRP family; CAMP binding,	8e-06
2qcs_B		291	CAMP-dependent protein kinase type I-alpha regula	9e-06
2qcs_B		291	CAMP-dependent protein kinase type I-alpha regula	1e-04
2z69_A		154	DNR protein; beta barrel, dimerization helix, tran	3e-05
3e97_A		231	Transcriptional regulator, CRP/FNR family; YP_6044	3e-05
3fx3_A		237	Cyclic nucleotide-binding protein; helix_TURN_heli	4e-05
3dv8_A		220	Transcriptional regulator, CRP/FNR family; cyclic	7e-05
3shr_A		299	CGMP-dependent protein kinase 1; cyclic nucleotide	1e-04
3of1_A		246	CAMP-dependent protein kinase regulatory subunit;	2e-04
3tnp_B		416	CAMP-dependent protein kinase type II-beta regula	2e-04
3dkw_A		227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	3e-04
2gau_A		232	Transcriptional regulator, CRP/FNR family; structu	5e-04
1o5l_A		213	Transcriptional regulator, CRP family; TM1171, str	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 65.3 bits (158), Expect = 6e-11
 Identities = 83/544 (15%), Positives = 149/544 (27%), Gaps = 161/544 (29%)

Query: 137 GSTTQYILHLLDMDKLSATKRRILDYT-----KYEMLNTAFKT---------FGDLG--- 179
             T  YI      D+L    +    Y       Y  L  A             G LG   
Sbjct: 107 MMTRMYIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 180 --------DDEEL-----GPVDWPTVKRY------IRCLNDLEGVPMHPHSASETGDSLD 220
                      ++       + W  +K        +  L  L        ++     S  
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 221 PTNLRDIRIRL---------------LNGVQ-AAYWAMLDEG-RI---TQTAANILMQSV 260
              +  I+  L               L  VQ A  W   +   +I   T+        S 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 261 DEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLE------FACSI 314
                ++ +       L  +       K+L     PQ L         E         SI
Sbjct: 284 ATTTHISLDHHSM--TLTPDEVKSLLLKYLDCR--PQDL-------PREVLTTNPRRLSI 332

Query: 315 CAAFLRAHKIARQQLHDFIGDSGIASVVIEES--KVEGEDARK-------FLEDVRVNFP 365
            A  +R              D    + +IE S   +E  + RK       F     +  P
Sbjct: 333 IAESIRDGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--P 388

Query: 366 -QVLHVV---KTRQVTYSVLNHLIDYIQNLEKVGLLEE--KEM-LHLHDAVQSDLKRLLR 418
             +L ++     +     V+N L  Y        L+E+  KE  + +   +  +LK    
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKY-------SLVEKQPKESTISIPS-IYLELKV--- 437

Query: 419 NPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMK--------------LSGVTL 464
                   K+ +  + H  + +       P    + +++               L  +  
Sbjct: 438 --------KLENEYALHRSIVD---HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 465 YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDS 524
               +    ++L  +   ++  + IR  H        GS L   + L  K Y        
Sbjct: 487 PERMTLFRMVFL--D--FRFLEQKIR--HDSTAWNASGSILNTLQQL--KFYKP------ 532

Query: 525 VVLCFFIESDKILSILRSDPAVEDFLWQQSAIAL----SRILLPQIFEKLTMQDMRALIA 580
               +  ++D     L +   + DFL +     +    + +L  +I     M +  A+  
Sbjct: 533 ----YICDNDPKYERLVNA--ILDFLPKIEENLICSKYTDLL--RI---ALMAEDEAIFE 581

Query: 581 ERSK 584
           E  K
Sbjct: 582 EAHK 585

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149	Back alignment and structure

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227	Back alignment and structure

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142	Back alignment and structure

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187	Back alignment and structure

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216	Back alignment and structure

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291	Back alignment and structure

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291	Back alignment and structure

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154	Back alignment and structure

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231	Back alignment and structure

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237	Back alignment and structure

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220	Back alignment and structure

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299	Back alignment and structure

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246	Back alignment and structure

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416	Back alignment and structure

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227	Back alignment and structure

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232	Back alignment and structure

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		846
1zyb_A		232	Transcription regulator, CRP family; NP_813211.1,	99.88
4ev0_A		216	Transcription regulator, CRP family; CAMP binding,	99.88
2ptm_A		198	Hyperpolarization-activated (IH) channel; ION chan	99.87
3dkw_A		227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.87
3d0s_A		227	Transcriptional regulatory protein; CAMP receptor	99.87
3dv8_A		220	Transcriptional regulator, CRP/FNR family; cyclic	99.86
3fx3_A		237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.86
3e97_A		231	Transcriptional regulator, CRP/FNR family; YP_6044	99.86
3bpz_A		202	Potassium/sodium hyperpolarization-activated cycli	99.85
3iwz_A		230	CAP-like, catabolite activation-like protein; XCC,	99.85
3of1_A		246	CAMP-dependent protein kinase regulatory subunit;	99.84
3ryp_A		210	Catabolite gene activator; CAMP receptor protein (	99.84
2gau_A		232	Transcriptional regulator, CRP/FNR family; structu	99.83
1o5l_A		213	Transcriptional regulator, CRP family; TM1171, str	99.83
3shr_A		299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.82
3tnp_B		416	CAMP-dependent protein kinase type II-beta regula	99.82
2oz6_A		207	Virulence factor regulator; winged helix, helix-tu	99.82
3kcc_A		260	Catabolite gene activator; helix-turn-helix, CAMP,	99.81
3ukn_A		212	Novel protein similar to vertebrate potassium VOL	99.81
3dn7_A		194	Cyclic nucleotide binding regulatory protein; stru	99.81
4din_B		381	CAMP-dependent protein kinase type I-beta regulat	99.81
2fmy_A		220	COOA, carbon monoxide oxidation system transcripti	99.81
2qcs_B		291	CAMP-dependent protein kinase type I-alpha regula	99.81
3mdp_A		142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.79
1ft9_A		222	Carbon monoxide oxidation system transcription reg	99.79
3e6c_C		250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.79
2pqq_A		149	Putative transcriptional regulator; APC7345, strep	99.78
2z69_A		154	DNR protein; beta barrel, dimerization helix, tran	99.78
3gyd_A		187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.77
3la7_A		243	Global nitrogen regulator; activator, DNA-binding,	99.77
2bgc_A		238	PRFA; bacterial infection, human pathogen, transcr	99.75
3idb_B		161	CAMP-dependent protein kinase type II-beta regulat	99.74
1o7f_A		469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.74
1vp6_A		138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.72
4f8a_A		160	Potassium voltage-gated channel subfamily H membe;	99.71
3ocp_A		139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.71
3b02_A		195	Transcriptional regulator, CRP family; structural	99.7
3pna_A		154	CAMP-dependent protein kinase type I-alpha regula	99.69
4ava_A		333	Lysine acetyltransferase; allosteric regulation, d	99.68
4f7z_A		999	RAP guanine nucleotide exchange factor 4; cyclic n	99.66
3shr_A		299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.66
2zcw_A		202	TTHA1359, transcriptional regulator, FNR/CRP famil	99.65
1wgp_A		137	Probable cyclic nucleotide-gated ION channel 6; cy	99.64
2qcs_B		291	CAMP-dependent protein kinase type I-alpha regula	99.58
3of1_A		246	CAMP-dependent protein kinase regulatory subunit;	99.58
2d93_A		134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.57
3tnp_B		416	CAMP-dependent protein kinase type II-beta regula	99.57
4din_B		381	CAMP-dependent protein kinase type I-beta regulat	99.53
1o7f_A		469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.44
3beh_A		355	MLL3241 protein; transmembrane protein, membrane p	99.39
3cf6_E		694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.32
4f7z_A		999	RAP guanine nucleotide exchange factor 4; cyclic n	99.23
2kbv_A		28	Sodium/hydrogen exchanger 1; transmembrane, peptid	97.78
1wgp_A		137	Probable cyclic nucleotide-gated ION channel 6; cy	86.54
3mdp_A		142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	85.8
2gau_A		232	Transcriptional regulator, CRP/FNR family; structu	83.74
2z69_A		154	DNR protein; beta barrel, dimerization helix, tran	82.78
3idb_B		161	CAMP-dependent protein kinase type II-beta regulat	82.24
3bpz_A		202	Potassium/sodium hyperpolarization-activated cycli	81.67
1vp6_A		138	CNBD, cyclic-nucleotide binding domain of mesorhiz	81.13

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2	Back alignment and structure

Probab=99.88  E-value=1.4e-22  Score=211.19  Aligned_cols=222  Identities=12%  Similarity=0.060  Sum_probs=180.4

Q ss_pred             CCCCCccchHHHHhcCCCCCCCCHhhHHHHhhc--CeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEee
Q 003116          420 PPLVKFPKISDLISAHPLLRELPPSVREPLELS--TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHP  497 (846)
Q Consensus       420 p~~~~~~~~~~~L~~~~lF~~Ls~e~l~~L~~~--~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~  497 (846)
                      |+..++|+...+++++|+|.+|++++++.+...  ++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|+..++.
T Consensus         8 ~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~   87 (232)
T 1zyb_A            8 HHHHHMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIE   87 (232)
T ss_dssp             CHHHHHHHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEE
T ss_pred             hhHhHHHHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEE
Confidence            444446677889999999999999999999998  999999999999999999999999999999999887666666678


Q ss_pred             EeCCCCeechhhhhcCCC-ceeEEEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhHHHHhhccHHHHH
Q 003116          498 VFTHGSNLGLYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMR  576 (846)
Q Consensus       498 ~l~~G~~fGE~sll~~~p-r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL~~l~~~~~~e~l~~~dlr  576 (846)
                      .+++|++||+.+++.+.+ +.++++|.++|+++.||++.|.+++.++|.+...+++.++.++....  .....+...+..
T Consensus        88 ~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~--~~~~~l~~~~~~  165 (232)
T 1zyb_A           88 QIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLY--SRLWDEPTLDLK  165 (232)
T ss_dssp             EEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHH--HHTTSCCCCSHH
T ss_pred             EccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCHH
Confidence            999999999999999988 99999999999999999999999999999999999999988887643  222334434444


Q ss_pred             HHHHhccccccccCCcEEEecCcEEEEEEeceEeeecchhhhccCCccCCccchhhhhhhccccCccccccccccceeee
Q 003116          577 ALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLV  656 (846)
Q Consensus       577 ~l~~~~~~~~~y~~ge~I~~~~~~~~iL~~G~v~~~~~~eeli~~~~~l~~~~~n~~l~~l~~~g~~~~~~~~~~~~~~v  656 (846)
                      .+++ ..........      +        |.+...-++++ |+...+++|.+.++.++.|+..|++....         
T Consensus       166 ~Rl~-~~L~~l~~~~------~--------~~~~~~~t~~~-lA~~lG~sr~tvsR~l~~l~~~glI~~~~---------  220 (232)
T 1zyb_A          166 SKII-RFFLSHCEKP------Q--------GEKTFKVKMDD-LARCLDDTRLNISKTLNELQDNGLIELHR---------  220 (232)
T ss_dssp             HHHH-HHHHTTCSSS------S--------SCEEEECCHHH-HHHHHTSCHHHHHHHHHHHHHTTSCEEET---------
T ss_pred             HHHH-HHHHHHHhhc------C--------CeEEecCCHHH-HHHHhCCChhHHHHHHHHHHHCCCEEecC---------
Confidence            4443 1111111111      0        12222334645 58889999999999999999999998888         


Q ss_pred             ecceEEEEEeccccc
Q 003116          657 ETRARVIIFDIAAFE  671 (846)
Q Consensus       657 e~~~~i~~~d~~~~~  671 (846)
                         +++.+.|.++|+
T Consensus       221 ---~~i~I~d~~~L~  232 (232)
T 1zyb_A          221 ---KEILIPDAQKLL  232 (232)
T ss_dssp             ---TEEEESCGGGGC
T ss_pred             ---CEEEEeChHHcC
Confidence               899999998874

PyMOL of 1zyb

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}	Back alignment and structure

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}	Back alignment and structure

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}	Back alignment and structure

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*	Back alignment and structure

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}	Back alignment and structure

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*	Back alignment and structure

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}	Back alignment and structure

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*	Back alignment and structure

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}	Back alignment and structure

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}	Back alignment and structure

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...	Back alignment and structure

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2	Back alignment and structure

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2	Back alignment and structure

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}	Back alignment and structure

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*	Back alignment and structure

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2	Back alignment and structure

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}	Back alignment and structure

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B	Back alignment and structure

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}	Back alignment and structure

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}	Back alignment and structure

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*	Back alignment and structure

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*	Back alignment and structure

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}	Back alignment and structure

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1	Back alignment and structure

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A	Back alignment and structure

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}	Back alignment and structure

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}	Back alignment and structure

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}	Back alignment and structure

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*	Back alignment and structure

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A	Back alignment and structure

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*	Back alignment and structure

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2	Back alignment and structure

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A	Back alignment and structure

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}	Back alignment and structure

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*	Back alignment and structure

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A	Back alignment and structure

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*	Back alignment and structure

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*	Back alignment and structure

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E	Back alignment and structure

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}	Back alignment and structure

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}	Back alignment and structure

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2	Back alignment and structure

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*	Back alignment and structure

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}	Back alignment and structure

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}	Back alignment and structure

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*	Back alignment and structure

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}	Back alignment and structure

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2	Back alignment and structure

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*	Back alignment and structure

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}	Back alignment and structure

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E	Back alignment and structure

>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}	Back alignment and structure

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2	Back alignment and structure

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}	Back alignment and structure

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2	Back alignment and structure

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}	Back alignment and structure

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*	Back alignment and structure

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*	Back alignment and structure

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		846
d1vp6a_		133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	9e-07
d1o7fa2		155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	5e-06
d1ne6a1		136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	2e-05
d1ne6a2		132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	9e-05
d1cx4a2		147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	0.002

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 46.7 bits (110), Expect = 9e-07
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 425 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 484
           F +   L++A PL ++L P+V   +  + +     +G  + R G     ++ +  G V  
Sbjct: 6   FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV 65

Query: 485 TSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 544
                            G+  G   ++ G+P  + +   + V    + S     +  S P
Sbjct: 66  A-------TPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP 118

Query: 545 AVEDFLWQQSA 555
            + +   + + 
Sbjct: 119 EIAEIFRKTAL 129

PyMOL of d1vp6a_

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155	Back information, alignment and structure

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136	Back information, alignment and structure

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132	Back information, alignment and structure

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		846
d1q3ea_		193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.83
d1cx4a2		147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.8
d1cx4a1		136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.79
d1ne6a2		132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.78
d1zyba2		147	Probable transcription regulator BT4300, N-termina	99.77
d1vp6a_		133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.77
d1ne6a1		136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.76
d2gaua2		142	Transcriptional regulator PG0396, N-terminal domai	99.74
d2oz6a2		134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.71
d1i5za2		132	Catabolite gene activator protein, N-terminal doma	99.71
d3e5ua2		139	Chlorophenol reduction protein CprK {Desulfitobact	99.68
d1ft9a2		132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.68
d1o7fa2		155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.68
d1o7fa3		124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.67
d1o5la1		129	CRP-like transcriptional regulator TM1171, N-termi	99.65
d1wgpa_		137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.63
d2zcwa2		112	Transcriptional regulator TTHA1359, N-terminal dom	99.51
d2bgca2		131	Listeriolysin regulatory protein PrfA, N-terminal	92.97
d1zyba1		73	Probable transcription regulator BT4300, C-termina	91.32
d1ne6a1		136	Regulatory subunit of Protein kinase A {Cow (Bos t	90.46
d1cx4a1		136	Regulatory subunit of Protein kinase A {Rat (Rattu	89.5
d1o7fa3		124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	88.42
d2zcwa1		82	Transcriptional regulator TTHA1359, C-terminal dom	87.54
d2oz6a2		134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	86.91
d1o7fa2		155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	86.74
d1zyba2		147	Probable transcription regulator BT4300, N-termina	86.08
d2gaua1		81	Transcriptional regulator PG0396, C-terminal domai	86.07
d1cx4a2		147	Regulatory subunit of Protein kinase A {Rat (Rattu	85.17
d2gaua2		142	Transcriptional regulator PG0396, N-terminal domai	84.94
d2bgca1		100	Listeriolysin regulatory protein PrfA, C-terminal	84.4
d1ne6a2		132	Regulatory subunit of Protein kinase A {Cow (Bos t	82.92
d1vp6a_		133	Putative ion channel CnbD {Mesorhizobium loti [Tax	82.68
d1q3ea_		193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	81.7
d1i5za2		132	Catabolite gene activator protein, N-terminal doma	81.64
d1wgpa_		137	Probable cyclic nucleotide-gated ion channel 6 {Th	80.81

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.8e-20  Score=184.56  Aligned_cols=183  Identities=17%  Similarity=0.247  Sum_probs=159.4

Q ss_pred             HHhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhhH-hhhhHHHHHHHHHHhcCCCCCCccchHHHHhcCCCCC
Q 003116          361 RVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLR  439 (846)
Q Consensus       361 r~~~P~i~~~~ktr~~~~~vL~~~~e~i~~L~~~GlIde~E~-~~L~~~L~~~lk~l~~~p~~~~~~~~~~~L~~~~lF~  439 (846)
                      +..+-.+..+|+.+.++..+..+.++|+++.|+...+++.+. ..+++.+..++.....          .++|+++|+|.
T Consensus         8 ~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~~~~----------~~~l~~~~~F~   77 (193)
T d1q3ea_           8 QEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFNC----------RKLVASMPLFA   77 (193)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHT----------HHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccHHHHHHHCCcchhHHHHHHHH----------HHHHhcchHHH
Confidence            334456778899999999999999999999998777777664 5577777777665432          56899999999


Q ss_pred             CCCHhhHHHHhhcCeEEEEcCCCEEecCCCCCCeEEEEeeeEEEEEEEecCCeEEEeeEeCCCCeechhhhhcCCCceeE
Q 003116          440 ELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSD  519 (846)
Q Consensus       440 ~Ls~e~l~~L~~~~~~~~~~kGe~I~~eGd~~~~lY~I~sG~Vkv~~~~~g~~~~~~~~l~~G~~fGE~sll~~~pr~~t  519 (846)
                      ++++..+..|+..++...|.+|++|+++|++++.+|||.+|.|.+...+  +.   ...+++|++||+.+++.+.++.++
T Consensus        78 ~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~--~~---~~~l~~G~~fGe~~~~~~~~~~~~  152 (193)
T d1q3ea_          78 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG--NK---EMKLSDGSYFGEICLLTRGRRTAS  152 (193)
T ss_dssp             TSCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-C--CC---EEEECTTCEECHHHHHHCSBCSSE
T ss_pred             hhhHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCC--cc---eeeeccceeeeeeeccCCCccccc
Confidence            9999999999999999999999999999999999999999999997543  32   247899999999999999999999


Q ss_pred             EEEcceEEEEEEcHHHHHHHHhhChHHHHHHHHHHHHHH
Q 003116          520 MVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIAL  558 (846)
Q Consensus       520 v~A~~~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~rL  558 (846)
                      ++|.++|+++.|++++|.+++..+|.+...+...+..||
T Consensus       153 ~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL  191 (193)
T d1q3ea_         153 VRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRL  191 (193)
T ss_dssp             EEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred             ceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999888887776665

PyMOL of d1q3ea_

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}	Back information, alignment and structure

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}	Back information, alignment and structure

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}	Back information, alignment and structure

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}	Back information, alignment and structure

>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}	Back information, alignment and structure

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}	Back information, alignment and structure

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure