Citrus Sinensis ID: 003122
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 846 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RWS8 | 822 | Pentatricopeptide repeat- | yes | no | 0.958 | 0.986 | 0.674 | 0.0 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.743 | 0.768 | 0.25 | 2e-64 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.628 | 0.617 | 0.280 | 4e-62 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.751 | 0.804 | 0.253 | 2e-60 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.732 | 0.565 | 0.256 | 9e-60 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.813 | 0.758 | 0.229 | 4e-58 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.647 | 0.751 | 0.251 | 3e-56 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.667 | 0.615 | 0.270 | 1e-52 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.718 | 0.813 | 0.235 | 5e-52 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.596 | 0.815 | 0.257 | 1e-51 |
| >sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1195 bits (3092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/821 (67%), Positives = 671/821 (81%), Gaps = 10/821 (1%)
Query: 20 THSNTLKPPLKIHCNAKRKPKP---DPSSPFKGRRSGLVDYDKGQHEVSTQVSGLRKSDI 76
T+ + PP + R KP S F+ ++S V+YD+G+HEVS + GLRK+DI
Sbjct: 5 TNFKLVTPP-----ESSRADKPGATKASDAFQEKKSVSVNYDRGEHEVSVNIGGLRKADI 59
Query: 77 PRRHRLAVEGNRFQKDWSVSEVVERVLELKHYEDVEGVLNRWVGRFARKNFPFLIKEITQ 136
PRR+R+ VE +RFQKDWSVSEVV+R++ L +E+V+GVLN WVGRFARKNFP LI+E+++
Sbjct: 60 PRRYRIRVENDRFQKDWSVSEVVDRLMALNRWEEVDGVLNSWVGRFARKNFPVLIRELSR 119
Query: 137 RGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAE 196
RG I VF WMK QKNYCARNDIYNMMIRLHARHN +D+ARGLFFEMQKW CKPDAE
Sbjct: 120 RGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAE 179
Query: 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKM 256
TY+ALI+AHGRAGQWRWAMN+ DDMLRAA+APSRSTYNNLINACGS+GNWREAL+VCKKM
Sbjct: 180 TYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKM 239
Query: 257 TENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQY 316
T+NGVGPDLVTHNIVLSAYK+G QYSKALSYFELMKG +RPDTTT NI+IYCL KLGQ
Sbjct: 240 TDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQS 299
Query: 317 DKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYN 376
+A+DLF+SMREKR+EC PD+VTFTSI+HLYSV G+IENC+ VF M+AEGLKPNIVSYN
Sbjct: 300 SQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYN 359
Query: 377 ALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN 436
ALM AYA HGMS ALSV +IK+NG+ PD+VSYT LLN+YGRS+QP KA+EVF MMR
Sbjct: 360 ALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKE 419
Query: 437 NLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNI 496
KPN+V+Y+ALIDAYGSNG LAEAVE+FR+MEQDGI+PN+VS+CTLLAAC R +KVN+
Sbjct: 420 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNV 479
Query: 497 DAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISS 556
D VL AA+ R I LNT AYNSAIGSY+N E EKAIALY+ M+K+KV DSVT+T+LIS
Sbjct: 480 DTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISG 539
Query: 557 CCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD 616
CR+S+Y EA+ +L EM DL IPLT +VYSSV+ AYSKQG + EAES+FN MKM+GC PD
Sbjct: 540 SCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPD 599
Query: 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE 676
VI YT+MLHAYN +E W KAC LFLEME N IEPDSIACSALMRAFNKGGQPS V ++ +
Sbjct: 600 VIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 659
Query: 677 FMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736
MRE++I F+ ++FFE+ AC+ L++WK IDLI+ M+P +SIGL NQ+LHL GKSG
Sbjct: 660 LMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSG 719
Query: 737 RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFR 796
++E+MMKLF+KI++SG N TY+ILL++LLA GNWRKYIEVL+WM AGIQPS M+R
Sbjct: 720 KVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYR 779
Query: 797 DIVSFAQTRGGAEYAAIIQERIESLRMKSGD--PSFDQQST 835
DI+SF + G E+ +I++++ESLR K P+F + T
Sbjct: 780 DIISFGERSAGIEFEPLIRQKLESLRNKGEGLIPTFRHEGT 820
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 158/632 (25%), Positives = 312/632 (49%), Gaps = 3/632 (0%)
Query: 169 LHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAP 228
H + + +A F + + ++ D +IS G+ G+ A N+F+ + +
Sbjct: 147 FHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSL 206
Query: 229 SRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAY-KNGAQYSKALSY 287
+Y +LI+A ++G +REA+ V KKM E+G P L+T+N++L+ + K G ++K S
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSL 266
Query: 288 FELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLY 347
E MK I PD T+N +I C + + +A +F M K + D VT+ +++ +Y
Sbjct: 267 VEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM--KAAGFSYDKVTYNALLDVY 324
Query: 348 SVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDI 407
+ + + V N M+ G P+IV+YN+L++AYA GM EA+ + N++ + G PD+
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDV 384
Query: 408 VSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFRE 467
+YT+LL+ + R+ + A +F MR KPN+ +++A I YG+ G E +++F E
Sbjct: 385 FTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDE 444
Query: 468 MEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGE 527
+ G+ P+IV+ TLLA G+ G + V + +N+ I +Y G
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGS 504
Query: 528 YEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS 587
+E+A+ +Y+ M V PD TY ++++ R + ++ L EM D + Y S
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564
Query: 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNN 647
++ AY+ I S+ + P + ++ + + +A F E++
Sbjct: 565 LLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERG 624
Query: 648 IEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTI 707
PD ++++ + + +K V ++M+E+ T S + + ++ S D+ +
Sbjct: 625 FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSE 684
Query: 708 DLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNL 767
++++++ I N +++ ++ R+ ++F ++ +SG + TY+ + +
Sbjct: 685 EILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSY 744
Query: 768 LAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIV 799
A + + I V+++M G +P+ + IV
Sbjct: 745 AADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (612), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 157/559 (28%), Positives = 274/559 (49%), Gaps = 27/559 (4%)
Query: 106 KHYEDVEGVLNRWVGRFARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNM 165
K+ DVE ++N+ + + RG+I +F KN + ND + +
Sbjct: 71 KYSYDVESLINK-------------LSSLPPRGSIARCLDIF------KNKLSLND-FAL 110
Query: 166 MIRLHARHNQIDKARGLFFEMQK--WRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLR 223
+ + A ++ LF MQ+ W CKP+ Y +IS GR G + +FD+M
Sbjct: 111 VFKEFAGRGDWQRSLRLFKYMQRQIW-CKPNEHIYTIMISLLGREGLLDKCLEVFDEMPS 169
Query: 224 AAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSA-YKNGAQYS 282
V+ S +Y LINA G G + +L++ +M + P ++T+N V++A + G +
Sbjct: 170 QGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWE 229
Query: 283 KALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTS 342
L F M+ I+PD T+N ++ G D+A +F +M + +PD+ T++
Sbjct: 230 GLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMND--GGIVPDLTTYSH 287
Query: 343 IIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNG 402
++ + ++E + M + G P+I SYN L+ AYA G KEA+ VF++++ G
Sbjct: 288 LVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAG 347
Query: 403 LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAV 462
P+ +Y+ LLN +G+S + R++F M+ +N P+ +Y+ LI+ +G G E V
Sbjct: 348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVV 407
Query: 463 EVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSY 522
+F +M ++ IEP++ + ++ ACG+ G + +L DI ++ AY I ++
Sbjct: 408 TLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAF 467
Query: 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTN 582
YE+A+ + M + P T+ L+ S R E+ L ++D IP
Sbjct: 468 GQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNR 527
Query: 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLE 642
+++ I AY + G EA + M+ S C PD T A+L Y+ A ++ F E
Sbjct: 528 DTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEE 587
Query: 643 METNNIEPDSIACSALMRA 661
M+ ++I P SI C +M A
Sbjct: 588 MKASDILP-SIMCYCMMLA 605
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 175/689 (25%), Positives = 317/689 (46%), Gaps = 53/689 (7%)
Query: 193 PDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALK- 251
PD TY LI RAG+ ++++ + L+ + +A+
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144
Query: 252 VCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELM---KGTNIRPDTTTHNIVIY 308
V ++MTE G P++ ++NI+L + + +AL +M +G PD ++ VI
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 309 CLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGL 368
K G DKA +H M ++ LPD+VT+ SII ++ V NTM+ G+
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDR--GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262
Query: 369 KPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKARE 428
P+ ++YN+++ Y S G KEA+ +++ +G+ PD+V+Y+ L++ ++ + ++AR+
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322
Query: 429 VFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACG 488
+F+ M LKP + +Y L+ Y + G L E + M ++GI P+ L+ A
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA 382
Query: 489 RCGRKVNIDAVLLAAEMRDIKL--NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD 546
+ G KV+ A+L+ ++MR L N V Y + IG G E A+ ++ M + P
Sbjct: 383 KQG-KVD-QAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440
Query: 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606
++ Y LI C +++ A + EM+D I L ++S+I ++ K+G + E+E +F
Sbjct: 441 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFE 500
Query: 607 MMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGG 666
+M G P+VITY +++ Y A ++A L M + ++P+++ S L+ + K
Sbjct: 501 LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 560
Query: 667 QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTI--DLIKQMEPSFHVVSIGL 724
+ L++ + M ++ D I + ++L L + +T +L ++ S + +
Sbjct: 561 RMEDALVLFKEMESSGVS-PDIITYNIILQ-GLFQTRRTAAAKELYVRITESGTQIELST 618
Query: 725 LNQLLHLLGKS-----------------------------------GRIESMMKLFFKIV 749
N +LH L K+ GR + LF
Sbjct: 619 YNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFS 678
Query: 750 SSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRG--- 806
S+G N+ TY ++ +N++ G + ++ MED G GM IV RG
Sbjct: 679 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 738
Query: 807 -GAEYAAIIQERIESLRMKSGDPSFDQQS 834
Y ++I E+ SL + D S
Sbjct: 739 RAGTYLSMIDEKHFSLEASTASLFIDLLS 767
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 169/659 (25%), Positives = 303/659 (45%), Gaps = 39/659 (5%)
Query: 143 SNQVFNWMKNQKNYCARN-DIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNAL 201
S+ VF + C N +Y+++IR++ R I + +F M + P T NA+
Sbjct: 105 SSFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAI 164
Query: 202 ISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGV 261
+ + ++G+ + +ML+ + P +T+N LIN + G++ ++ + +KM ++G
Sbjct: 165 LGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGY 224
Query: 262 GPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAID 321
P +VT+N VL Y ++ A+ + MK + D T+N++I+ L + + K
Sbjct: 225 APTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYL 284
Query: 322 LFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAA 381
L MR++ P+ VT+ ++I+ +S G++ + N ML+ GL PN V++NAL+
Sbjct: 285 LLRDMRKRMIH--PNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDG 342
Query: 382 YASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPN 441
+ S G KEAL +F ++ GL P VSY LL+ ++ + AR + M+ N +
Sbjct: 343 HISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVG 402
Query: 442 LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLL 501
++Y+ +ID NG L EAV + EM +DGI+P+IV+ L+ + GR ++
Sbjct: 403 RITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVC 462
Query: 502 AAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLS 561
+ N + Y++ I + +G ++AI +Y+ M D T+ VL++S C+
Sbjct: 463 RIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAG 522
Query: 562 RYSEALGFL-----------------------------------DEMMDLKIPLTNQVYS 586
+ +EA F+ DEM + T Y
Sbjct: 523 KVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYG 582
Query: 587 SVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETN 646
S++ K G + EAE + + D + Y +L A + + KA +LF EM
Sbjct: 583 SLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQR 642
Query: 647 NIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE-MVLACSLLRDWKT 705
+I PDS ++L+ + G+ +L A+ + + + + V WK
Sbjct: 643 SILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKA 702
Query: 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILL 764
I +QM+ H I N ++ + G+IE L ++ + N TY+ILL
Sbjct: 703 GIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILL 761
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 168/733 (22%), Positives = 333/733 (45%), Gaps = 45/733 (6%)
Query: 94 SVSEVVERVLELKHYEDVEGVLNRWVGRFARKN---FPFLIKEITQRGAINHSNQVFNWM 150
++S ++ +++ +H+ + N V R + + +I+ + + ++ + ++ M
Sbjct: 194 TLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHM 253
Query: 151 KNQKNYCARNDI-YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAG 209
+ C N + YN++I + ++ +A G+ ++ KPD TY L+ +
Sbjct: 254 --EATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQ 311
Query: 210 QWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHN 269
++ + + D+ML +PS + ++L+ G EAL + K++ + GV P+L +N
Sbjct: 312 EFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYN 371
Query: 270 IVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREK 329
++ + G ++ +A F+ M +RP+ T++I+I + G+ D A+ M +
Sbjct: 372 ALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDT 431
Query: 330 RSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSK 389
+ + + S+I+ + G I +G M+ + L+P +V+Y +LM Y S G
Sbjct: 432 GLKL--SVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKIN 489
Query: 390 EALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALI 449
+AL +++E+ G+ P I ++T+LL+ R+ A ++FN M N+KPN V+Y+ +I
Sbjct: 490 KALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMI 549
Query: 450 DAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIK 509
+ Y G +++A E +EM + GI P+ S L+ G+ + + +
Sbjct: 550 EGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCE 609
Query: 510 LNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGF 569
LN + Y + + G+ E+A+++ + M +R V D V Y VLI + G
Sbjct: 610 LNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGL 669
Query: 570 LDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629
L EM D + + +Y+S+I A SK G EA ++++M GC P+ +TYTA+++
Sbjct: 670 LKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCK 729
Query: 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSI 689
A +A L +M+ + P+ + + KG ++ ++
Sbjct: 730 AGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKG----------------EVDMQKAV 773
Query: 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIV 749
+ LL + T N L+ + GRIE +L +++
Sbjct: 774 ELHNAILKGLLANTAT-------------------YNMLIRGFCRQGRIEEASELITRMI 814
Query: 750 SSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAE 809
G + TY+ ++ L + +K IE+ M + GI+P + ++ G E
Sbjct: 815 GDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAG--E 872
Query: 810 YAAIIQERIESLR 822
+ R E LR
Sbjct: 873 MGKATELRNEMLR 885
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 139/553 (25%), Positives = 268/553 (48%), Gaps = 5/553 (0%)
Query: 145 QVFNWMKNQKNYCARND-IYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALIS 203
++ N + + + C ND +++++IR + + ++ +A F ++ + NALI
Sbjct: 149 EIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIG 208
Query: 204 AHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGP 263
+ R G A ++ ++ R+ V + T N ++NA G + ++ E GV P
Sbjct: 209 SLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYP 268
Query: 264 DLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLF 323
D+VT+N ++SAY + +A M G P T+N VI L K G+Y++A ++F
Sbjct: 269 DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVF 328
Query: 324 HSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYA 383
M RS PD T+ S++ G + + VF+ M + + P++V ++++M+ +
Sbjct: 329 AEML--RSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFT 386
Query: 384 SHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV 443
G +AL FN +K+ GL PD V YT L+ Y R A + N M ++V
Sbjct: 387 RSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVV 446
Query: 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAA 503
+Y+ ++ +L EA ++F EM + + P+ ++ L+ + G N +
Sbjct: 447 TYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKM 506
Query: 504 EMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRY 563
+ + I+L+ V YN+ + + VG+ + A ++ M ++++P ++Y++L+++ C
Sbjct: 507 KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566
Query: 564 SEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAM 623
+EA DEM+ I T + +S+I Y + G ++ ES M G PD I+Y +
Sbjct: 567 AEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL 626
Query: 624 LHAYNTAEDWEKACALF--LEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ 681
++ + E+ KA L +E E + PD ++++ F + Q + +V M E+
Sbjct: 627 IYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIER 686
Query: 682 DITFSDSIFFEMV 694
+ S + M+
Sbjct: 687 GVNPDRSTYTCMI 699
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 167/618 (27%), Positives = 285/618 (46%), Gaps = 53/618 (8%)
Query: 37 RKPKPDPSSPFKGRRSGLVDYDKGQHEVSTQVSGLRKSDIPRRHRLAVEGNRFQK--DWS 94
+ PK D SS F GRRS VS G +K+ + RH A E + Q D+S
Sbjct: 126 QTPKSDLSSDFSGRRS--------TRFVSKMHFGRQKTTMATRHSSAAE-DALQNAIDFS 176
Query: 95 VSEVVERVLELKHYEDVEGVLNRWVGRFARKNFPFLIKEITQRGAINHSNQVFNW-MKNQ 153
+ + L L + G + ++I+E+ R + + + + +K +
Sbjct: 177 GDDEMFHSLMLSFESKLCG----------SDDCTYIIRELGNRNECDKAVGFYEFAVKRE 226
Query: 154 KNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRW 213
+ + + + MI R+ ++ A+ +F ++ALISA+GR+G
Sbjct: 227 RRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEE 286
Query: 214 AMNIFDDMLRAAVAPSRSTYNNLINACGSTG-NWREALKVCKKMTENGVGPDLVTHNIVL 272
A+++F+ M + P+ TYN +I+ACG G +++ K +M NGV PD +T N +L
Sbjct: 287 AISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLL 346
Query: 273 SAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSE 332
+ G + A + F+ M I D ++N ++ + K GQ D A ++ M KR
Sbjct: 347 AVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKR-- 404
Query: 333 CLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEAL 392
+P++V+++++I ++ G+ + +F M G+ + VSYN L++ Y G S+EAL
Sbjct: 405 IMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEAL 464
Query: 393 SVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAY 452
+ E+ G+ D+V+Y +LL YG+ + + ++VF M+ ++ PNL++YS LID Y
Sbjct: 465 DILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGY 524
Query: 453 GSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEM--RDIKL 510
GL EA+E+FRE + G+ ++V L+ A C + AV L EM I
Sbjct: 525 SKGGLYKEAMEIFREFKSAGLRADVVLYSALIDAL--CKNGLVGSAVSLIDEMTKEGISP 582
Query: 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYT---VLISSCCRLSRYSEAL 567
N V YNS I ++ + M S Y+ L S LS +E
Sbjct: 583 NVVTYNSIIDAF----------------GRSATMDRSADYSNGGSLPFSSSALSALTETE 626
Query: 568 G--FLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625
G + L N+ + I E +F M P+V+T++A+L+
Sbjct: 627 GNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILE---VFRKMHQLEIKPNVVTFSAILN 683
Query: 626 AYNTAEDWEKACALFLEM 643
A + +E A L E+
Sbjct: 684 ACSRCNSFEDASMLLEEL 701
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 158/672 (23%), Positives = 311/672 (46%), Gaps = 64/672 (9%)
Query: 142 HSNQVFNWMKNQKNYC-ARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNA 200
+++ VF ++ + C + + +++++++ ++R + IDKA + Q P +YNA
Sbjct: 115 YASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNA 174
Query: 201 LISAHGRAGQ-WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTEN 259
++ A R+ + +A N+F K+M E+
Sbjct: 175 VLDATIRSKRNISFAENVF-----------------------------------KEMLES 199
Query: 260 GVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKA 319
V P++ T+NI++ + AL+ F+ M+ P+ T+N +I KL + D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 320 IDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALM 379
L SM K E P+++++ +I+ G+++ V M G + V+YN L+
Sbjct: 260 FKLLRSMALKGLE--PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLI 317
Query: 380 AAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLK 439
Y G +AL + E+ ++GL P +++YTSL+++ ++ +A E + MR+ L
Sbjct: 318 KGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 440 PNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAV 499
PN +Y+ L+D + G + EA V REM +G P++V+ L+ G C DA+
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 500 LLAAEMRDIKL--NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSC 557
+ +M++ L + V+Y++ + + + ++A+ + + M ++ + PD++TY+ LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 558 CRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDV 617
C R EA +EM+ + +P Y+++I+AY +G + +A + N M G PDV
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 618 ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEF 677
+TY+ +++ N +A L L++ P + L+ + S V L+ F
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGF 615
Query: 678 MREQDITFSDSIFFEMV--------LACSLL-------RDWKTTIDLIKQMEPS---FHV 719
+ +T +D +F M+ A +++ D + L K+M S H
Sbjct: 616 CMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHT 675
Query: 720 VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEV 779
V++ L + LH K G++ + + ++ S + +L++ GN ++V
Sbjct: 676 VTVIALVKALH---KEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDV 732
Query: 780 LQWMEDAGIQPS 791
L M G P+
Sbjct: 733 LAEMAKDGFLPN 744
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/509 (25%), Positives = 243/509 (47%), Gaps = 4/509 (0%)
Query: 146 VFNWMKNQKNYCARNDIYNM--MIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALIS 203
V + K + +D+Y M MI + R ++ A + K +PD T++ L++
Sbjct: 89 VLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVN 148
Query: 204 AHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGP 263
G+ A+ + D M+ P T + LIN G EAL + +M E G P
Sbjct: 149 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQP 208
Query: 264 DLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLF 323
D VT+ VL+ + AL F M+ NI+ ++IVI L K G +D A+ LF
Sbjct: 209 DEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF 268
Query: 324 HSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYA 383
+ M K + D+VT++S+I +G+ ++ + M+ + P++V+++AL+ +
Sbjct: 269 NEMEMKGIK--ADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFV 326
Query: 384 SHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV 443
G EA ++NE+ G+ PD ++Y SL++ + + +A ++F++M +P++V
Sbjct: 327 KEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV 386
Query: 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAA 503
+YS LI++Y + + + +FRE+ G+ PN ++ TL+ + G+ +
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446
Query: 504 EMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRY 563
R + + V Y + + GE KA+ +++ M+K ++ Y ++I C S+
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506
Query: 564 SEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAM 623
+A + D + Y+ +I K+G ++EA+ +F MK GC+PD TY +
Sbjct: 507 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566
Query: 624 LHAYNTAEDWEKACALFLEMETNNIEPDS 652
+ A+ + L EM+ DS
Sbjct: 567 IRAHLGGSGLISSVELIEEMKVCGFSADS 595
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 846 | ||||||
| 297739653 | 852 | unnamed protein product [Vitis vinifera] | 0.975 | 0.968 | 0.747 | 0.0 | |
| 359481811 | 848 | PREDICTED: pentatricopeptide repeat-cont | 0.966 | 0.964 | 0.748 | 0.0 | |
| 255577248 | 808 | pentatricopeptide repeat-containing prot | 0.930 | 0.974 | 0.752 | 0.0 | |
| 224090111 | 786 | predicted protein [Populus trichocarpa] | 0.919 | 0.989 | 0.762 | 0.0 | |
| 357509703 | 855 | Pentatricopeptide repeat-containing prot | 0.975 | 0.964 | 0.683 | 0.0 | |
| 356503440 | 832 | PREDICTED: pentatricopeptide repeat-cont | 0.953 | 0.969 | 0.712 | 0.0 | |
| 297827821 | 822 | EMB2654 [Arabidopsis lyrata subsp. lyrat | 0.958 | 0.986 | 0.674 | 0.0 | |
| 30688764 | 822 | pentatricopeptide repeat-containing prot | 0.958 | 0.986 | 0.674 | 0.0 | |
| 227202654 | 815 | AT2G41720 [Arabidopsis thaliana] | 0.943 | 0.979 | 0.677 | 0.0 | |
| 2335106 | 810 | putative salt-inducible protein [Arabido | 0.944 | 0.986 | 0.663 | 0.0 |
| >gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1310 bits (3389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/827 (74%), Positives = 709/827 (85%), Gaps = 2/827 (0%)
Query: 1 MATVQHHSPLI-KLTHSPDSTHSNTLKPPLKIHCNAKR-KPKPDPSSPFKGRRSGLVDYD 58
M++ + SP+I HS S H + P H K + + ++ VDYD
Sbjct: 1 MSSTPNPSPIIFDFPHSTHSPHPKSSNPTFTTHKTLISCKESKSKGALEEKKKVVFVDYD 60
Query: 59 KGQHEVSTQVSGLRKSDIPRRHRLAVEGNRFQKDWSVSEVVERVLELKHYEDVEGVLNRW 118
G+H+VST VSGLRK+DIP+ +RL VE +RFQKDWSVSEVVER+L+L H++DVEG+LNRW
Sbjct: 61 NGKHQVSTHVSGLRKADIPKHYRLRVEADRFQKDWSVSEVVERLLKLNHWDDVEGLLNRW 120
Query: 119 VGRFARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDK 178
VGRF+RKNFP LI+EITQ G++ HS QVF WMKNQKNYCARNDIYNMMIRLHARHN +D+
Sbjct: 121 VGRFSRKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQ 180
Query: 179 ARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLIN 238
ARGLFFEMQKWRCKPDAETYNALI+AHGRAGQWRWAMNI DDMLRAA+ PSRSTYNNLIN
Sbjct: 181 ARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLIN 240
Query: 239 ACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRP 298
ACGS+GNW+EAL VCKKMTENGVGPDLVTHNIVLSAYK G QYSK LSYFELMKGTNIRP
Sbjct: 241 ACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRP 300
Query: 299 DTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKG 358
DTTT NIVIYCLVKLGQ KAID+F+SM+EKRSEC PD+VTFT+IIHLYSV GQIENC+
Sbjct: 301 DTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQT 360
Query: 359 VFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYG 418
FNTMLAEGLKPNIVSYNAL+ AYASHGM KEA SVFNEIKKNG PD+VSYTSLLNAYG
Sbjct: 361 AFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYG 420
Query: 419 RSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIV 478
+S +P KA +VF +MR N+ KPNLVSY+ALIDAYGS GLL EAVE+ EME++G++PNIV
Sbjct: 421 KSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIV 480
Query: 479 SICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCM 538
SICTLLAACGRCG+KV I +VL AAE+R IKLNT AYNSAIGSY++VGEY+KA++LY+ M
Sbjct: 481 SICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAM 540
Query: 539 KKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI 598
+ +KV PD VTY VLIS CC++S+Y EALGFLDEMMDLKIPL+ +VYSSVI AYSKQG +
Sbjct: 541 RTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQV 600
Query: 599 AEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSAL 658
EAESMF MKM GC PDVITYTAM+HAY+ AE+WEKA ALFLEMET++++PDSIACS+L
Sbjct: 601 TEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSL 660
Query: 659 MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718
MRAFNKGGQP+KVL++AEFMRE+ I F++S FFEMV ACSLLR+W+ I LIK MEPS
Sbjct: 661 MRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSIS 720
Query: 719 VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIE 778
VVSIGLLNQLLH LGKSG+IE+MMKLF+KIV+SGAE NF TYSILLKNLLAAGNWRKYIE
Sbjct: 721 VVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIE 780
Query: 779 VLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLRMKS 825
VLQWME+AG+QPS GM+R I SFAQ R GAEYAA+IQERIESL+ S
Sbjct: 781 VLQWMEEAGLQPSVGMYRSISSFAQNRSGAEYAAVIQERIESLKRNS 827
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein At2g41720-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1304 bits (3374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/820 (74%), Positives = 704/820 (85%), Gaps = 2/820 (0%)
Query: 1 MATVQHHSPLI-KLTHSPDSTHSNTLKPPLKIHCNAKR-KPKPDPSSPFKGRRSGLVDYD 58
M++ + SP+I HS S H + P H K + + ++ VDYD
Sbjct: 1 MSSTPNPSPIIFDFPHSTHSPHPKSSNPTFTTHKTLISCKESKSKGALEEKKKVVFVDYD 60
Query: 59 KGQHEVSTQVSGLRKSDIPRRHRLAVEGNRFQKDWSVSEVVERVLELKHYEDVEGVLNRW 118
G+H+VST VSGLRK+DIP+ +RL VE +RFQKDWSVSEVVER+L+L H++DVEG+LNRW
Sbjct: 61 NGKHQVSTHVSGLRKADIPKHYRLRVEADRFQKDWSVSEVVERLLKLNHWDDVEGLLNRW 120
Query: 119 VGRFARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDK 178
VGRF+RKNFP LI+EITQ G++ HS QVF WMKNQKNYCARNDIYNMMIRLHARHN +D+
Sbjct: 121 VGRFSRKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQ 180
Query: 179 ARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLIN 238
ARGLFFEMQKWRCKPDAETYNALI+AHGRAGQWRWAMNI DDMLRAA+ PSRSTYNNLIN
Sbjct: 181 ARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLIN 240
Query: 239 ACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRP 298
ACGS+GNW+EAL VCKKMTENGVGPDLVTHNIVLSAYK G QYSK LSYFELMKGTNIRP
Sbjct: 241 ACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRP 300
Query: 299 DTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKG 358
DTTT NIVIYCLVKLGQ KAID+F+SM+EKRSEC PD+VTFT+IIHLYSV GQIENC+
Sbjct: 301 DTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQT 360
Query: 359 VFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYG 418
FNTMLAEGLKPNIVSYNAL+ AYASHGM KEA SVFNEIKKNG PD+VSYTSLLNAYG
Sbjct: 361 AFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYG 420
Query: 419 RSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIV 478
+S +P KA +VF +MR N+ KPNLVSY+ALIDAYGS GLL EAVE+ EME++G++PNIV
Sbjct: 421 KSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIV 480
Query: 479 SICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCM 538
SICTLLAACGRCG+KV I +VL AAE+R IKLNT AYNSAIGSY++VGEY+KA++LY+ M
Sbjct: 481 SICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAM 540
Query: 539 KKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI 598
+ +KV PD VTY VLIS CC++S+Y EALGFLDEMMDLKIPL+ +VYSSVI AYSKQG +
Sbjct: 541 RTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQV 600
Query: 599 AEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSAL 658
EAESMF MKM GC PDVITYTAM+HAY+ AE+WEKA ALFLEMET++++PDSIACS+L
Sbjct: 601 TEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSL 660
Query: 659 MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718
MRAFNKGGQP+KVL++AEFMRE+ I F++S FFEMV ACSLLR+W+ I LIK MEPS
Sbjct: 661 MRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSIS 720
Query: 719 VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIE 778
VVSIGLLNQLLH LGKSG+IE+MMKLF+KIV+SGAE NF TYSILLKNLLAAGNWRKYIE
Sbjct: 721 VVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIE 780
Query: 779 VLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERI 818
VLQWME+AG+QPS GM+R I SFAQ R GAEYAA+IQERI
Sbjct: 781 VLQWMEEAGLQPSVGMYRSISSFAQNRSGAEYAAVIQERI 820
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1270 bits (3286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/797 (75%), Positives = 695/797 (87%), Gaps = 10/797 (1%)
Query: 27 PPL----KIHCNAKRKPKPDPSSPFKGRRSGLVDYDKGQHEVSTQVSGLRKSDIPRRHRL 82
PPL K+HC +K K D + F+ ++SG VDYD GQH+VSTQV+G RK D+ +R+RL
Sbjct: 10 PPLVSNFKLHC---KKAKNDVA--FQEKKSGFVDYDTGQHQVSTQVTGFRKCDLQKRYRL 64
Query: 83 AVEGNRFQKDWSVSEVVERVLELK-HYEDVEGVLNRWVGRFARKNFPFLIKEITQRGAIN 141
V G+RFQ+DW++S+VV ++LEL Y+DVE VLN W+GRFARKNFP LIKEITQRGA+
Sbjct: 65 KVGGDRFQRDWTLSQVVSKILELNPKYDDVEVVLNHWIGRFARKNFPRLIKEITQRGALE 124
Query: 142 HSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNAL 201
HSN VF WMK QKNYCAR D+YNMMIRLHARHN D+ARGLFFEMQ+WRCKPD+ETYNAL
Sbjct: 125 HSNLVFRWMKLQKNYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNAL 184
Query: 202 ISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGV 261
I+AHGRAGQWRWAMNI +DMLR A+ PSRSTYNNLINACGS+GNWREALKV K+MTENGV
Sbjct: 185 INAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGV 244
Query: 262 GPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAID 321
GPDLVTHNIVLSAYK GAQYSKALSYFELMKGTNIRPDTTT NIVIYCLVKLGQ +KAID
Sbjct: 245 GPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAID 304
Query: 322 LFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAA 381
+F+SMREKR+EC PDIVTFTSIIHLYS++GQ+ENCK VF+TMLAEGL P IVSYNAL+ A
Sbjct: 305 IFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGA 364
Query: 382 YASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPN 441
YA HGMS+EALSVF +IK +GL PD+VSYTSLL++YGRS+QP KARE+FNMM+ LKPN
Sbjct: 365 YAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPN 424
Query: 442 LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLL 501
+VS++ALIDAYGSNGLLA+AV+V REMEQDGI PNIV+ICTLLAACGRCG+KVNIDAVL
Sbjct: 425 VVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDAVLS 484
Query: 502 AAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLS 561
AA+MR IKLNTVA NSAIGSYMNVGEYEKA+ALY M+K KV P+SVTYTVLIS CC++S
Sbjct: 485 AAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLISGCCKMS 544
Query: 562 RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYT 621
+Y +A+ F +MM+LKI LT +V SSVI AYSKQG I EAES+F MMKM+GC PD+IT+T
Sbjct: 545 KYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFT 604
Query: 622 AMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ 681
AMLHAYN E W KAC L EME +I+ D+IACSALMRAFNK G PS+VL++AEFM+E+
Sbjct: 605 AMLHAYNAGEHWGKACDLIQEMEDYDIQLDTIACSALMRAFNKRGNPSQVLILAEFMKEK 664
Query: 682 DITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM 741
+I FSD+IFFEMV ACSLLRDW+T ++L+K MEPSF VVSIGLLNQLLH+LG+SG+IESM
Sbjct: 665 EIPFSDAIFFEMVSACSLLRDWRTILNLMKLMEPSFSVVSIGLLNQLLHVLGRSGKIESM 724
Query: 742 MKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSF 801
MKLF+KI +SGAE NFNTYSI+LKNLLA GNWRKYIEVL+WMEDAGIQPS GM+ DI S+
Sbjct: 725 MKLFYKITASGAEINFNTYSIMLKNLLAVGNWRKYIEVLEWMEDAGIQPSIGMYYDISSY 784
Query: 802 AQTRGGAEYAAIIQERI 818
Q GGAEYAAIIQER+
Sbjct: 785 VQKGGGAEYAAIIQERV 801
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa] gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1258 bits (3255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/796 (76%), Positives = 692/796 (86%), Gaps = 18/796 (2%)
Query: 27 PPL---KIHCNAKRKPKPDPSSPFKGRRSGLVDYDKGQHEVSTQVSGLRKSDIPRRHRLA 83
PP KI C + K D + F+ ++SG VDYDKG H VSTQVSG+RK IP+R+R+
Sbjct: 3 PPAFKPKILC---KNSKSDAA--FEEKKSGFVDYDKGIHHVSTQVSGIRKDQIPQRYRIR 57
Query: 84 VEGNRFQKDWSVSEVVERVLELKHY-EDVEGVLNRWVGRFARKNFPFLIKEITQRGAINH 142
V+G+RFQKDWSVS+VV++VLEL H +DVEG+LNRWVGRFARKNFP LIKEITQ+G+I H
Sbjct: 58 VQGDRFQKDWSVSQVVQKVLELDHKSDDVEGLLNRWVGRFARKNFPLLIKEITQKGSIEH 117
Query: 143 SNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALI 202
S VF WMKNQ+NYCAR DIYNMMIRLHARHN D+ARGLFFEMQKWRCKPDAET NALI
Sbjct: 118 SILVFRWMKNQRNYCARTDIYNMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALI 177
Query: 203 SAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVG 262
+AHGR+GQWRWAMNI +DML+ A+ PSRSTYNNLINACGS+GNWREALK+CKKMTENGVG
Sbjct: 178 NAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVG 237
Query: 263 PDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDL 322
PDLVTHNI+LSAYK GAQY+KALSYFELMKGTNIRPDTTT NI+IYCL KLGQY+KAI +
Sbjct: 238 PDLVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGI 297
Query: 323 FHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAY 382
F SMREKR+EC PD+VTFTSIIHLYSVNGQIENC+ VF+TM+AEGLKPNIVSYN LM AY
Sbjct: 298 FKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAY 357
Query: 383 ASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNL 442
ASHGM+KEALSVFN IK +GL PD+VSYTSLLN+YGRSQQP KAREVF MM+ + LKPN+
Sbjct: 358 ASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNI 417
Query: 443 VSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLA 502
VSY+A+IDAYGSNGLLAEAVEV REMEQDGI PN VSICTLLAACGRC RKVNID VL A
Sbjct: 418 VSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQA 477
Query: 503 AEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSR 562
AE R IKLNT+AYNSAIGSYMNVGE+EKA ++Y+ M+K KV+PD+VT+TVLIS CC++++
Sbjct: 478 AERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTK 537
Query: 563 YSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTA 622
Y EAL FL EMMDLKIP+T + YSS G I EAESMFN MKM+GCSPDV+TYT
Sbjct: 538 YCEALEFLSEMMDLKIPMTKEAYSS--------GKITEAESMFNKMKMAGCSPDVVTYTM 589
Query: 623 MLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQD 682
MLHAYN AE W+KACAL EME NI+PD+IACSALMRAFNKGG PSKVL++AEFMRE++
Sbjct: 590 MLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNKGGDPSKVLILAEFMREKE 649
Query: 683 ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742
I SD+IFFEMV ACSLLRDW+TTI+LIK ME SF VVSIGLLNQLLHLLGKSG+IESMM
Sbjct: 650 IPLSDAIFFEMVSACSLLRDWRTTIELIKLMESSFSVVSIGLLNQLLHLLGKSGKIESMM 709
Query: 743 KLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFA 802
KLF+KI+ SGAE N NTYSILLKNLLA GNWRKYIEVL+WME+A +QPS GM+ DI+SFA
Sbjct: 710 KLFYKIIGSGAEINCNTYSILLKNLLAVGNWRKYIEVLEWMEEARVQPSNGMYFDIISFA 769
Query: 803 QTRGGAEYAAIIQERI 818
Q + GA Y++IIQER+
Sbjct: 770 Q-KSGATYSSIIQERV 784
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1232 bits (3188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 590/863 (68%), Positives = 699/863 (80%), Gaps = 38/863 (4%)
Query: 1 MATVQHHSP-LIKLTHSPDSTHSNTLKPPLKIHCNAKRKPKPDPSSPFKGRRSGLVDYDK 59
MAT SP I+L+ +ST +PP + + K FK ++ G VDYD+
Sbjct: 1 MATTT--SPYCIQLSGVTEST-----RPPK----STTTRKKSSNEVAFKEKKDGFVDYDR 49
Query: 60 GQHEVSTQVSGLRKSDIPRRHRLAVEGNRFQKDWSVSEVVERVLELKHYEDVEGVLNRWV 119
G H+VST++SGLRK DIP +RL V GNRFQKDW+VSEVV+ VL L +D+EG+LNRW+
Sbjct: 50 GHHQVSTKISGLRKEDIPAHYRLRVAGNRFQKDWTVSEVVDSVLSLTLRDDIEGLLNRWI 109
Query: 120 GRFARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKA 179
GRFARKNFPFLI+E+TQRG+I H N VF+WMKNQKNYCAR DIYNMMIRLHARHN+ D+A
Sbjct: 110 GRFARKNFPFLIRELTQRGSIEHCNLVFSWMKNQKNYCARTDIYNMMIRLHARHNRTDQA 169
Query: 180 RGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINA 239
RGLFFEMQK RCKPDAETYNALI+AHGRAGQWRWAMNI DDMLRAA+ PSRSTYNNLINA
Sbjct: 170 RGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINA 229
Query: 240 CGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD 299
CGS+GNW+EAL VCKKMT+NGVGPDLVTHNI+L+A+K+G QYSKALSYFEL+KGT+IRPD
Sbjct: 230 CGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPD 289
Query: 300 TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGV 359
TTTHNI+I+CLVKL QYDKA+D+F+SM+EK+SEC PD+VTFTS+IHLYSV G IENC+
Sbjct: 290 TTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAA 349
Query: 360 FNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGR 419
FN MLAEGLKPNIVSYNAL+ AYA+ GM EAL VFNEIK+NG PD+VSYTSLLNAYGR
Sbjct: 350 FNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGR 409
Query: 420 SQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVS 479
S++P KARE+F M++ NNLKPN+VSY+ALIDAYGSNGLL +A+E+ REMEQD I PN+VS
Sbjct: 410 SRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVS 469
Query: 480 ICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMK 539
ICTLLAACGRCG+KV ID VL AAEMR IKLNTVAYNSAIGSY+NVGEY+KAI LY M+
Sbjct: 470 ICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMR 529
Query: 540 KRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQ---- 595
K+K+ DSVTYTVLIS CC++S++ EAL F++EMM LK+P++ +VYSS+I AYSKQ
Sbjct: 530 KKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASAL 589
Query: 596 GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIAC 655
G I EAES FN+MK GCSPDV+TYTAML AYN AE WEK ALF EME N+++ D+IAC
Sbjct: 590 GQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIAC 649
Query: 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715
+ALMRAFNKGGQP +VL +A+ MRE+DI SD+IFFEMV AC LL DWKT +D+IK MEP
Sbjct: 650 AALMRAFNKGGQPGRVLSLAQSMREKDIPLSDTIFFEMVSACGLLHDWKTAVDMIKYMEP 709
Query: 716 SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRK 775
S V+S G LN L+ LGKSG+IE M+KLFFK+++SGAE NFNTYSILLKNLL++GNWRK
Sbjct: 710 SLPVISSGCLNLFLNSLGKSGKIEIMLKLFFKMLASGAEVNFNTYSILLKNLLSSGNWRK 769
Query: 776 YIE---------------------VLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAII 814
Y+E VLQWMEDAGI PS M+RDI SF+Q G E AA+I
Sbjct: 770 YLEDNSVAAVMCFLLSKQLAMDARVLQWMEDAGIHPSNEMYRDI-SFSQKNCGVENAAVI 828
Query: 815 QERIESLRMKSGDPSFDQQSTSS 837
+ER+ESL+ +GD S Q S
Sbjct: 829 KERLESLKRNAGDQSSASQPCES 851
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41720-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/820 (71%), Positives = 693/820 (84%), Gaps = 13/820 (1%)
Query: 1 MATVQHHSPLIKLTHSPDSTHSNTLKPPLKIHCNAKRKPKPDPSSPFKGRRSGLVDYDKG 60
MA+ +H ++L + +ST + + I C K K D + FK + G VDYD+G
Sbjct: 1 MASTANHC--LQLAGATESTR----RWRISISC----KKKSDKLA-FKETKEGFVDYDRG 49
Query: 61 QHEVSTQVSGLRKSDIPRRHRLAVEGNRFQKDWSVSEVVERVLELK--HYEDVEGVLNRW 118
QHEVST++SGLRK DI R+RL V GNRFQ DW+VSEV E VL L +DV+G+LNRW
Sbjct: 50 QHEVSTKISGLRKDDIAARYRLRVAGNRFQMDWTVSEVAELVLSLNLSDDDDVDGLLNRW 109
Query: 119 VGRFARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDK 178
VGRFARKNFPFLIKE+TQRG+I H N+VF W+KNQKNY ARNDIYNMMIRLHARHN+ D+
Sbjct: 110 VGRFARKNFPFLIKELTQRGSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTDQ 169
Query: 179 ARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLIN 238
ARGLFFEMQ+WRCKPD ETYNA+I+AHGRAGQWRWAMNI DDMLRAA+ PSRSTYNNLIN
Sbjct: 170 ARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLIN 229
Query: 239 ACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRP 298
ACGS+GNW+EAL VCKKMTENGVGPDLVTHNI+LSA+K+GAQYSKALSYFELMKGT+IRP
Sbjct: 230 ACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRP 289
Query: 299 DTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKG 358
DTTT NIVI+CLVKL QYDKAI++F+SMREK+SEC PD+VTFTSIIHLYSV GQ+ENC+
Sbjct: 290 DTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEA 349
Query: 359 VFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYG 418
FN M+AEGLKPNIVSYNAL+ AYA+ GM EA FNEIK+NG PDIVSYTSLLNAYG
Sbjct: 350 AFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYG 409
Query: 419 RSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIV 478
RSQ+P KAR++F+ M+ N LKPNLVSY+ALIDAYGSNGLLA+A+++ REMEQ+GI+PN+V
Sbjct: 410 RSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVV 469
Query: 479 SICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCM 538
SICTLLAACGRC RKV ID VL AAEMR IKLNTVAYN+AIGS MNVGEY+KAI LYK M
Sbjct: 470 SICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSM 529
Query: 539 KKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI 598
+K+K+ DSVTYTVLIS CC++S+Y EAL F++E+M LK+PL+ +VYSS I AYSKQG I
Sbjct: 530 RKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQI 589
Query: 599 AEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSAL 658
EAES FN+MK SGC PDV+TYTAML AYN AE+WEKA ALF EME ++I+ D+IAC+AL
Sbjct: 590 VEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAAL 649
Query: 659 MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718
MR+FNKGGQP +VL +AE MRE++I FSD+IFFEMV ACS+L+DW+T +D+IK +EPS
Sbjct: 650 MRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPSLP 709
Query: 719 VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIE 778
V+S G LNQ LH LGKSG+IE+M+KLFFK+++SGA+ N NTYSILLKNLL++GNWRKY+E
Sbjct: 710 VISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLE 769
Query: 779 VLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERI 818
VLQWMEDAGI PS M+ DI SF+Q G E AA+I+ER+
Sbjct: 770 VLQWMEDAGIHPSKEMYHDISSFSQKCCGNENAAVIRERL 809
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata] gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1202 bits (3110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/821 (67%), Positives = 677/821 (82%), Gaps = 10/821 (1%)
Query: 20 THSNTLKPPLKIHCNAKRKPKP---DPSSPFKGRRSGLVDYDKGQHEVSTQVSGLRKSDI 76
T+ + PP + R KP S F+ ++S V+YD+G+HEVS +V GLRK+DI
Sbjct: 5 TNFKLVTPP-----ESSRADKPGATKTSEAFQEKKSVSVNYDRGEHEVSIRVGGLRKADI 59
Query: 77 PRRHRLAVEGNRFQKDWSVSEVVERVLELKHYEDVEGVLNRWVGRFARKNFPFLIKEITQ 136
PRR+R+ VE +RFQKDWSVSEVV+R++ L +E+V+GVLN WVGRFARKNFP LI+E+++
Sbjct: 60 PRRYRIRVENDRFQKDWSVSEVVDRLMALNRWEEVDGVLNSWVGRFARKNFPVLIRELSR 119
Query: 137 RGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAE 196
RG I VF WMK+QKNYCARNDIYNMMIRLHARHN +D+ARGLFFEMQKW CKPDAE
Sbjct: 120 RGCIELCVNVFKWMKSQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAE 179
Query: 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKM 256
TY+ALI+AHGRAGQWRWAMN+ DDMLRAA+APSRSTYNNLINACGS+GNWR+AL+VCKKM
Sbjct: 180 TYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKM 239
Query: 257 TENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQY 316
T+NGVGPDLVTHNIVLSAYK+G QYSKALSYFELMKG +RPDTTT NI+IYCL KLGQ
Sbjct: 240 TDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQS 299
Query: 317 DKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYN 376
+A+D+F+SMR+KR+EC PD+VTFTSI+HLYSV G+IENC+ VF MLAEGLKPNIVSYN
Sbjct: 300 SQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYN 359
Query: 377 ALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN 436
ALM AYA HGMS+ ALSVF +IK+NG+ PD+VSYTSLLN+YGRS+QP KA+EVF MMR
Sbjct: 360 ALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKE 419
Query: 437 NLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNI 496
KPN+V+Y+ALIDAYGSNG LAEAVE+FR+MEQDG +PN+VS+CTLLAAC R +KVN+
Sbjct: 420 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNV 479
Query: 497 DAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISS 556
+ VL AA+ R I LNT AYNSAIGSY+N E EKAIALY+ M+K+KV DSVT+T+LIS
Sbjct: 480 ETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISG 539
Query: 557 CCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD 616
CR+S+Y EA+ +L EM DL IPLT +VYSSV+ AYSKQG + EAES+FN MKM+GC PD
Sbjct: 540 SCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPD 599
Query: 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE 676
VI YT+MLHAYN +E W KAC LFLEME N IEPDSIACSALMRAFNKGGQPS V ++ +
Sbjct: 600 VIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 659
Query: 677 FMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736
MRE+++ F+ ++FFE+ AC+ L++WK IDLI+ M+P +SIGL NQ+L+L GKSG
Sbjct: 660 LMREKEVPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLYLFGKSG 719
Query: 737 RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFR 796
++E+MMKLF+KI++SG E NF TY+ILL++LLA GNWRKYIEVL+WM DAGIQPS M+R
Sbjct: 720 KVEAMMKLFYKIIASGVEINFKTYAILLEHLLAVGNWRKYIEVLEWMSDAGIQPSNQMYR 779
Query: 797 DIVSFAQTRGGAEYAAIIQERIESLRMKSGD--PSFDQQST 835
DI+SF + G E+ +I++++ SLR D P+F Q T
Sbjct: 780 DIISFGERSAGIEFEPLIRQKLNSLRNIGEDLSPTFRHQGT 820
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654 gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana] gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana] gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1195 bits (3092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/821 (67%), Positives = 671/821 (81%), Gaps = 10/821 (1%)
Query: 20 THSNTLKPPLKIHCNAKRKPKP---DPSSPFKGRRSGLVDYDKGQHEVSTQVSGLRKSDI 76
T+ + PP + R KP S F+ ++S V+YD+G+HEVS + GLRK+DI
Sbjct: 5 TNFKLVTPP-----ESSRADKPGATKASDAFQEKKSVSVNYDRGEHEVSVNIGGLRKADI 59
Query: 77 PRRHRLAVEGNRFQKDWSVSEVVERVLELKHYEDVEGVLNRWVGRFARKNFPFLIKEITQ 136
PRR+R+ VE +RFQKDWSVSEVV+R++ L +E+V+GVLN WVGRFARKNFP LI+E+++
Sbjct: 60 PRRYRIRVENDRFQKDWSVSEVVDRLMALNRWEEVDGVLNSWVGRFARKNFPVLIRELSR 119
Query: 137 RGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAE 196
RG I VF WMK QKNYCARNDIYNMMIRLHARHN +D+ARGLFFEMQKW CKPDAE
Sbjct: 120 RGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAE 179
Query: 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKM 256
TY+ALI+AHGRAGQWRWAMN+ DDMLRAA+APSRSTYNNLINACGS+GNWREAL+VCKKM
Sbjct: 180 TYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKM 239
Query: 257 TENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQY 316
T+NGVGPDLVTHNIVLSAYK+G QYSKALSYFELMKG +RPDTTT NI+IYCL KLGQ
Sbjct: 240 TDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQS 299
Query: 317 DKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYN 376
+A+DLF+SMREKR+EC PD+VTFTSI+HLYSV G+IENC+ VF M+AEGLKPNIVSYN
Sbjct: 300 SQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYN 359
Query: 377 ALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN 436
ALM AYA HGMS ALSV +IK+NG+ PD+VSYT LLN+YGRS+QP KA+EVF MMR
Sbjct: 360 ALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKE 419
Query: 437 NLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNI 496
KPN+V+Y+ALIDAYGSNG LAEAVE+FR+MEQDGI+PN+VS+CTLLAAC R +KVN+
Sbjct: 420 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNV 479
Query: 497 DAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISS 556
D VL AA+ R I LNT AYNSAIGSY+N E EKAIALY+ M+K+KV DSVT+T+LIS
Sbjct: 480 DTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISG 539
Query: 557 CCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD 616
CR+S+Y EA+ +L EM DL IPLT +VYSSV+ AYSKQG + EAES+FN MKM+GC PD
Sbjct: 540 SCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPD 599
Query: 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE 676
VI YT+MLHAYN +E W KAC LFLEME N IEPDSIACSALMRAFNKGGQPS V ++ +
Sbjct: 600 VIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 659
Query: 677 FMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736
MRE++I F+ ++FFE+ AC+ L++WK IDLI+ M+P +SIGL NQ+LHL GKSG
Sbjct: 660 LMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSG 719
Query: 737 RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFR 796
++E+MMKLF+KI++SG N TY+ILL++LLA GNWRKYIEVL+WM AGIQPS M+R
Sbjct: 720 KVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYR 779
Query: 797 DIVSFAQTRGGAEYAAIIQERIESLRMKSGD--PSFDQQST 835
DI+SF + G E+ +I++++ESLR K P+F + T
Sbjct: 780 DIISFGERSAGIEFEPLIRQKLESLRNKGEGLIPTFRHEGT 820
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1185 bits (3066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/806 (67%), Positives = 662/806 (82%), Gaps = 8/806 (0%)
Query: 20 THSNTLKPPLKIHCNAKRKPKP---DPSSPFKGRRSGLVDYDKGQHEVSTQVSGLRKSDI 76
T+ + PP + R KP S F+ ++S V+YD+G+HEVS + GLRK+DI
Sbjct: 5 TNFKLVTPP-----ESSRADKPGATKASDAFQEKKSVSVNYDRGEHEVSVNIGGLRKADI 59
Query: 77 PRRHRLAVEGNRFQKDWSVSEVVERVLELKHYEDVEGVLNRWVGRFARKNFPFLIKEITQ 136
PRR+R+ VE +RFQKDWSVSEVV+R++ L +E+V+GVLN WVGRFARKNFP LI+E+++
Sbjct: 60 PRRYRIRVENDRFQKDWSVSEVVDRLMALNRWEEVDGVLNSWVGRFARKNFPVLIRELSR 119
Query: 137 RGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAE 196
RG I VF WMK QKNYCARNDIYNMMIRLHARHN +D+ARGLFFEMQKW CKPDAE
Sbjct: 120 RGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAE 179
Query: 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKM 256
TY+ALI+AHGRAGQWRWAMN+ DDMLRAA+APSRSTYNNLINACGS+GNWREAL+VCKKM
Sbjct: 180 TYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKM 239
Query: 257 TENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQY 316
T+NGVGPDLVTHNIVLSAYK+G QYSKALSYFELMKG +RPDTTT NI+IYCL KLGQ
Sbjct: 240 TDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQS 299
Query: 317 DKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYN 376
+A+DLF+SMREKR+EC PD+VTFTSI+HLYSV G+IENC+ VF M+AEGLKPNIVSYN
Sbjct: 300 SQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYN 359
Query: 377 ALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN 436
ALM AYA HGMS ALSV +IK+NG+ PD+VSYT LLN+YGRS+QP KA+EVF MMR
Sbjct: 360 ALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKE 419
Query: 437 NLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNI 496
KPN+V+Y+ALIDAYGSNG LAEAVE+FR+MEQDGI+PN+VS+CTLLAAC R +KVN+
Sbjct: 420 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNV 479
Query: 497 DAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISS 556
D VL AA+ R I LNT AYNSAIGSY+N E EKAIALY+ M+K+KV DSVT+T+LIS
Sbjct: 480 DTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISG 539
Query: 557 CCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD 616
CR+S+Y EA+ +L EM DL IPLT +VYSSV+ AYSKQG + EAES+FN MKM+GC PD
Sbjct: 540 SCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPD 599
Query: 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE 676
VI YT+MLHAYN +E W KAC L LEME N IEPDSIACSALMRAFNKGGQPS V ++ +
Sbjct: 600 VIAYTSMLHAYNASEKWGKACELLLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 659
Query: 677 FMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736
MRE++I F+ ++FFE+ AC+ L++WK IDLI+ M+P +SIGL NQ+LHL GKSG
Sbjct: 660 LMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSG 719
Query: 737 RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFR 796
++E+MMKLF+KI++SG N TY+ILL++LLA GNWRKYIEVL+WM AGIQPS M+R
Sbjct: 720 KVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYR 779
Query: 797 DIVSFAQTRGGAEYAAIIQERIESLR 822
DI+SF + G E+ +I++++ +R
Sbjct: 780 DIISFGERSAGIEFEPLIRQKLGEMR 805
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/821 (66%), Positives = 661/821 (80%), Gaps = 22/821 (2%)
Query: 20 THSNTLKPPLKIHCNAKRKPKP---DPSSPFKGRRSGLVDYDKGQHEVSTQVSGLRKSDI 76
T+ + PP + R KP S F+ ++S V+YD+G+HEVS + GLRK+DI
Sbjct: 5 TNFKLVTPP-----ESSRADKPGATKASDAFQEKKSVSVNYDRGEHEVSVNIGGLRKADI 59
Query: 77 PRRHRLAVEGNRFQKDWSVSEVVERVLELKHYEDVEGVLNRWVGRFARKNFPFLIKEITQ 136
PRR+R+ VE +RFQKDWSVSEVV+R++ L +E+V+GVLN WVGRFARKNFP LI+E+++
Sbjct: 60 PRRYRIRVENDRFQKDWSVSEVVDRLMALNRWEEVDGVLNSWVGRFARKNFPVLIRELSR 119
Query: 137 RGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAE 196
RG I VF WMK QKNYCARNDIYNMMIRLHARHN +D+ARGLFFEMQKW CKPDAE
Sbjct: 120 RGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAE 179
Query: 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKM 256
TY+ALI+AHGRAGQWRWAMN+ DDMLRAA+APSRSTYNNLINACGS+GNWREAL+VCKKM
Sbjct: 180 TYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKM 239
Query: 257 TENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQY 316
T+NGVGPDLVTHNIVLSAYK+G QYSKALSYFELMKG +RPDTTT NI+IYCL KLGQ
Sbjct: 240 TDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQS 299
Query: 317 DKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYN 376
+A+DLF+SMREKR+EC PD+VTFTSI+HLYSV G+IENC+ VF M+AEGLKPNIVSYN
Sbjct: 300 SQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYN 359
Query: 377 ALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN 436
ALM AYA HGMS ALSV +IK+NG+ PD+VSYT LLN+YGRS+QP KA+EVF MMR
Sbjct: 360 ALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKE 419
Query: 437 NLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNI 496
KPN+V+Y+ALIDAYGSNG LAEAVE+FR+MEQDGI+PN+VS+CTLLAAC R +KVN+
Sbjct: 420 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNV 479
Query: 497 DAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISS 556
D VL AA+ R I LNT AYNSAIGSY+N E EKAIALY+ M+K+KV DSVT+T+LIS
Sbjct: 480 DTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISG 539
Query: 557 CCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD 616
CR+S+Y EA+ +L EM DL IPLT K+G + EAES+FN MKM+GC PD
Sbjct: 540 SCRMSKYPEAISYLKEMEDLSIPLT------------KEGQVTEAESIFNQMKMAGCEPD 587
Query: 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE 676
VI YT+MLHAYN +E W KAC LFLEME N IEPDSIACSALMRAFNKGGQPS V ++ +
Sbjct: 588 VIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 647
Query: 677 FMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736
MRE++I F+ ++FFE+ AC+ L++WK IDLI+ M+P +SIGL NQ+LHL GKSG
Sbjct: 648 LMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSG 707
Query: 737 RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFR 796
++E+MMKLF+KI++SG N TY+ILL++LLA GNWRKYIEVL+WM AGIQPS M+R
Sbjct: 708 KVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYR 767
Query: 797 DIVSFAQTRGGAEYAAIIQERIESLRMKSGD--PSFDQQST 835
DI+SF + G E+ +I++++ESLR K P+F + T
Sbjct: 768 DIISFGERSAGIEFEPLIRQKLESLRNKGEGLIPTFRHEGT 808
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 846 | ||||||
| TAIR|locus:2054331 | 822 | EMB2654 "EMBRYO DEFECTIVE 2654 | 0.933 | 0.961 | 0.673 | 4.8e-300 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.738 | 0.763 | 0.255 | 3e-62 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.613 | 0.602 | 0.285 | 2.3e-59 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.647 | 0.751 | 0.251 | 1.1e-55 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.633 | 0.734 | 0.256 | 3.4e-52 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.633 | 0.850 | 0.247 | 2.3e-49 | |
| TAIR|locus:2178037 | 678 | AT5G39980 [Arabidopsis thalian | 0.643 | 0.802 | 0.235 | 3.8e-49 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.628 | 0.845 | 0.261 | 6.4e-49 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.575 | 0.793 | 0.260 | 1.1e-48 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.599 | 0.558 | 0.262 | 2.5e-48 |
| TAIR|locus:2054331 EMB2654 "EMBRYO DEFECTIVE 2654" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2880 (1018.9 bits), Expect = 4.8e-300, P = 4.8e-300
Identities = 534/793 (67%), Positives = 643/793 (81%)
Query: 35 AKRKPKPDP---SSPFKGRRSGLVDYDKGQHEVSTQVSGLRKSDIPRRHRLAVEGNRFQK 91
+ R KP S F+ ++S V+YD+G+HEVS + GLRK+DIPRR+R+ VE +RFQK
Sbjct: 15 SSRADKPGATKASDAFQEKKSVSVNYDRGEHEVSVNIGGLRKADIPRRYRIRVENDRFQK 74
Query: 92 DWXXXXXXXXXXXXKHYEDVEGVLNRWVGRFARKNFPFLIKEITQRGAINHSNQVFNWMK 151
DW +E+V+GVLN WVGRFARKNFP LI+E+++RG I VF WMK
Sbjct: 75 DWSVSEVVDRLMALNRWEEVDGVLNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKWMK 134
Query: 152 NQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQW 211
QKNYCARNDIYNMMIRLHARHN +D+ARGLFFEMQKW CKPDAETY+ALI+AHGRAGQW
Sbjct: 135 IQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQW 194
Query: 212 RWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIV 271
RWAMN+ DDMLRAA+APSRSTYNNLINACGS+GNWREAL+VCKKMT+NGVGPDLVTHNIV
Sbjct: 195 RWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIV 254
Query: 272 LSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRS 331
LSAYK+G QYSKALSYFELMKG +RPDTTT NI+IYCL KLGQ +A+DLF+SMREKR+
Sbjct: 255 LSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRA 314
Query: 332 ECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEA 391
EC PD+VTFTSI+HLYSV G+IENC+ VF M+AEGLKPNIVSYNALM AYA HGMS A
Sbjct: 315 ECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTA 374
Query: 392 LSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDA 451
LSV +IK+NG+ PD+VSYT LLN+YGRS+QP KA+EVF MMR KPN+V+Y+ALIDA
Sbjct: 375 LSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDA 434
Query: 452 YGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLN 511
YGSNG LAEAVE+FR+MEQDGI+PN+VS+CTLLAAC R +KVN+D VL AA+ R I LN
Sbjct: 435 YGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLN 494
Query: 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLD 571
T AYNSAIGSY+N E EKAIALY+ M+K+KV DSVT+T+LIS CR+S+Y EA+ +L
Sbjct: 495 TAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLK 554
Query: 572 EMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE 631
EM DL IPLT +VYSSV+ AYSKQG + EAES+FN MKM+GC PDVI YT+MLHAYN +E
Sbjct: 555 EMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASE 614
Query: 632 DWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFF 691
W KAC LFLEME N IEPDSIACSALMRAFNKGGQPS V ++ + MRE++I F+ ++FF
Sbjct: 615 KWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFF 674
Query: 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGXXXXXXXXXGKSGRIESMMKLFFKIVSS 751
E+ AC+ L++WK IDLI+ M+P +SIG GKSG++E+MMKLF+KI++S
Sbjct: 675 EIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIAS 734
Query: 752 GAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYA 811
G N TY+ILL++LLA GNWRKYIEVL+WM AGIQPS M+RDI+SF + G E+
Sbjct: 735 GVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFE 794
Query: 812 AIIQERIESLRMK 824
+I++++ESLR K
Sbjct: 795 PLIRQKLESLRNK 807
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 161/631 (25%), Positives = 308/631 (48%)
Query: 173 HNQIDKARGLF--FEMQK-WRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPS 229
H + D A F F QK ++ D +IS G+ G+ A N+F+ + +
Sbjct: 148 HKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLD 207
Query: 230 RSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAY-KNGAQYSKALSYF 288
+Y +LI+A ++G +REA+ V KKM E+G P L+T+N++L+ + K G ++K S
Sbjct: 208 VYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLV 267
Query: 289 ELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYS 348
E MK I PD T+N +I C + + +A +F M K + D VT+ +++ +Y
Sbjct: 268 EKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM--KAAGFSYDKVTYNALLDVYG 325
Query: 349 VNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIV 408
+ + + V N M+ G P+IV+YN+L++AYA GM EA+ + N++ + G PD+
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385
Query: 409 SYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREM 468
+YT+LL+ + R+ + A +F MR KPN+ +++A I YG+ G E +++F E+
Sbjct: 386 TYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI 445
Query: 469 EQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEY 528
G+ P+IV+ TLLA G+ G + V + +N+ I +Y G +
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSF 505
Query: 529 EKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSV 588
E+A+ +Y+ M V PD TY ++++ R + ++ L EM D + Y S+
Sbjct: 506 EQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSL 565
Query: 589 ISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNI 648
+ AY+ I S+ + P + ++ + + +A F E++
Sbjct: 566 LHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGF 625
Query: 649 EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTID 708
PD ++++ + + +K V ++M+E+ T S + + ++ S D+ + +
Sbjct: 626 SPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEE 685
Query: 709 LIKQMEPSFHVVSIGXXXXXXXXXGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLL 768
+++++ I ++ R+ ++F ++ +SG + TY+ + +
Sbjct: 686 ILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYA 745
Query: 769 AAGNWRKYIEVLQWMEDAGIQPSYGMFRDIV 799
A + + I V+++M G +P+ + IV
Sbjct: 746 ADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 2.3e-59, P = 2.3e-59
Identities = 153/535 (28%), Positives = 268/535 (50%)
Query: 131 IKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQK-- 188
+ + RG+I +F KN + ND + ++ + A ++ LF MQ+
Sbjct: 83 LSSLPPRGSIARCLDIF------KNKLSLND-FALVFKEFAGRGDWQRSLRLFKYMQRQI 135
Query: 189 WRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWRE 248
W CKP+ Y +IS GR G + +FD+M V+ S +Y LINA G G +
Sbjct: 136 W-CKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYET 194
Query: 249 ALKVCKKMTENGVGPDLVTHNIVLSAY-KNGAQYSKALSYFELMKGTNIRPDTTTHNIVI 307
+L++ +M + P ++T+N V++A + G + L F M+ I+PD T+N ++
Sbjct: 195 SLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLL 254
Query: 308 Y-CLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAE 366
C ++ G D+A +F +M + +PD+ T++ ++ + ++E + M +
Sbjct: 255 SACAIR-GLGDEAEMVFRTMND--GGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASG 311
Query: 367 GLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKA 426
G P+I SYN L+ AYA G KEA+ VF++++ G P+ +Y+ LLN +G+S +
Sbjct: 312 GSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDV 371
Query: 427 REVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAA 486
R++F M+ +N P+ +Y+ LI+ +G G E V +F +M ++ IEP++ + ++ A
Sbjct: 372 RQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFA 431
Query: 487 CGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD 546
CG+ G + +L DI ++ AY I ++ YE+A+ + M + P
Sbjct: 432 CGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPS 491
Query: 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606
T+ L+ S R E+ L ++D IP +++ I AY + G EA +
Sbjct: 492 IETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYV 551
Query: 607 MMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA 661
M+ S C PD T A+L Y+ A ++ F EM+ ++I P SI C +M A
Sbjct: 552 DMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILP-SIMCYCMMLA 605
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 139/553 (25%), Positives = 268/553 (48%)
Query: 145 QVFNWMKNQKNYCARND-IYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALIS 203
++ N + + + C ND +++++IR + + ++ +A F ++ + NALI
Sbjct: 149 EIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIG 208
Query: 204 AHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGP 263
+ R G A ++ ++ R+ V + T N ++NA G + ++ E GV P
Sbjct: 209 SLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYP 268
Query: 264 DLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLF 323
D+VT+N ++SAY + +A M G P T+N VI L K G+Y++A ++F
Sbjct: 269 DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVF 328
Query: 324 HSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYA 383
M RS PD T+ S++ G + + VF+ M + + P++V ++++M+ +
Sbjct: 329 AEML--RSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFT 386
Query: 384 SHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV 443
G +AL FN +K+ GL PD V YT L+ Y R A + N M ++V
Sbjct: 387 RSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVV 446
Query: 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAA 503
+Y+ ++ +L EA ++F EM + + P+ ++ L+ + G N +
Sbjct: 447 TYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKM 506
Query: 504 EMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRY 563
+ + I+L+ V YN+ + + VG+ + A ++ M ++++P ++Y++L+++ C
Sbjct: 507 KEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566
Query: 564 SEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAM 623
+EA DEM+ I T + +S+I Y + G ++ ES M G PD I+Y +
Sbjct: 567 AEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL 626
Query: 624 LHAYNTAEDWEKACALF--LEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ 681
++ + E+ KA L +E E + PD ++++ F + Q + +V M E+
Sbjct: 627 IYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIER 686
Query: 682 DITFSDSIFFEMV 694
+ S + M+
Sbjct: 687 GVNPDRSTYTCMI 699
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 3.4e-52, P = 3.4e-52
Identities = 141/549 (25%), Positives = 268/549 (48%)
Query: 122 FARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARG 181
F F ++++ + G + ++ M+N + YN+++ + N A
Sbjct: 144 FKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAAN 203
Query: 182 LFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACG 241
+F++M + P T+ ++ A + A+++ DM + P+ Y LI++
Sbjct: 204 VFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLS 263
Query: 242 STGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTT 301
EAL++ ++M G PD T N V+ + ++A M PD
Sbjct: 264 KCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDI 323
Query: 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFN 361
T+ ++ L K+G+ D A DLF+ + + P+IV F ++IH + +G++++ K V +
Sbjct: 324 TYGYLMNGLCKIGRVDAAKDLFYRIPK------PEIVIFNTLIHGFVTHGRLDDAKAVLS 377
Query: 362 TMLAE-GLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRS 420
M+ G+ P++ +YN+L+ Y G+ AL V ++++ G P++ SYT L++ + +
Sbjct: 378 DMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKL 437
Query: 421 QQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSI 480
+ +A V N M + LKPN V ++ LI A+ + EAVE+FREM + G +P++ +
Sbjct: 438 GKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 497
Query: 481 CTLLAACGRCGRKVNIDAVLLAAEM--RDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCM 538
+L++ G C A+ L +M + NTV YN+ I +++ GE ++A L M
Sbjct: 498 NSLIS--GLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEM 555
Query: 539 KKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMM-DLKIPLTNQVYSSVISAYSKQGL 597
+ D +TY LI CR +A ++M+ D P +N + +I+ + G+
Sbjct: 556 VFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAP-SNISCNILINGLCRSGM 614
Query: 598 IAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSA 657
+ EA M + G +PD++T+ ++++ A E +F +++ I PD++ +
Sbjct: 615 VEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNT 674
Query: 658 LMRAFNKGG 666
LM KGG
Sbjct: 675 LMSWLCKGG 683
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 2.3e-49, P = 2.3e-49
Identities = 135/545 (24%), Positives = 258/545 (47%)
Query: 127 FPFLI---KEITQRGAINHSNQVFNWMKNQKNYCARNDIY--NMMIRLHARHNQIDKARG 181
FP ++ K ++ +N + V + + +N +++Y +++I R +Q+ A
Sbjct: 78 FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALA 137
Query: 182 LFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACG 241
+ +M K +PD T N+L++ + A+++ M+ P T+N LI+
Sbjct: 138 VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197
Query: 242 STGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTT 301
EA+ + +M G PDLVT+ IV++ ALS + M+ I P
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257
Query: 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFN 361
+N +I L + A++LF M K P++VT+ S+I G+ + + +
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIR--PNVVTYNSLIRCLCNYGRWSDASRLLS 315
Query: 362 TMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQ 421
M+ + PN+V+++AL+ A+ G EA +++E+ K + PDI +Y+SL+N +
Sbjct: 316 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 375
Query: 422 QPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSIC 481
+ +A+ +F +M + PN+V+Y+ LI + + E +E+FREM Q G+ N V+
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYT 435
Query: 482 TLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR 541
TL+ + N V + + + Y+ + N G+ E A+ +++ +++
Sbjct: 436 TLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS 495
Query: 542 KVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQV-YSSVISAYSKQGLIAE 600
K+ PD TY ++I C+ + + + LK N V Y++++S + ++GL E
Sbjct: 496 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL-SLKGVKPNVVTYTTMMSGFCRKGLKEE 554
Query: 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMR 660
A+++F MK G PD TY ++ A+ D + L EM + D+ +
Sbjct: 555 ADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTN 614
Query: 661 AFNKG 665
+ G
Sbjct: 615 MLHDG 619
|
|
| TAIR|locus:2178037 AT5G39980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 3.8e-49, P = 3.8e-49
Identities = 132/560 (23%), Positives = 277/560 (49%)
Query: 129 FLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQK 188
F++ +++ S + +W+ + Y YN+++R R Q D A GLF EM++
Sbjct: 124 FMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQ 183
Query: 189 WRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWRE 248
PD TY+ LI++ G+ G + A++ M + V+ Y+NLI ++ +
Sbjct: 184 RALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSK 243
Query: 249 ALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIY 308
A+ + ++ +G+ PDLV +N +++ Y + +A + M + P+T +++ ++
Sbjct: 244 AISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLS 303
Query: 309 CLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGL 368
V+ ++ +A+ +F M+E C D+ T +I +Y ++ +F ++ +
Sbjct: 304 VYVENHKFLEALSVFAEMKEVN--CALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDI 361
Query: 369 KPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKARE 428
+PN+VSYN ++ Y + EA+ +F +++ + ++V+Y +++ YG++ + KA
Sbjct: 362 EPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 421
Query: 429 VFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACG 488
+ M+ ++PN ++YS +I +G G L A +F+++ G+E + V T++ A
Sbjct: 422 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYE 481
Query: 489 RCGRKVNIDAVLLAAEMRDIKL-NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDS 547
R G + +L ++KL + + +AI G E+A +++ + + D
Sbjct: 482 RVGLMGHAKRLL-----HELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDI 536
Query: 548 VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNM 607
+ +I+ R RY + ++M + V + V++AY KQ +A++++
Sbjct: 537 SVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYRE 596
Query: 608 MKMSGCS-PDVITYTAMLHAYNTAEDWEKACALFLEMETN-NIEPDSI--ACSALMRAFN 663
M+ GC PD + + ML Y++ +D+E +LF +E++ N+ + +AL +
Sbjct: 597 MQEEGCVFPDEVHFQ-MLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERAD 655
Query: 664 KGGQPSKVLLVAEFMREQDI 683
K S+V+ MRE+ I
Sbjct: 656 KLNDASRVM---NRMRERGI 672
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| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 6.4e-49, P = 6.4e-49
Identities = 142/543 (26%), Positives = 265/543 (48%)
Query: 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDML 222
+N ++ A+ N+ D L MQ R D +YN LI+ R Q A+ + M+
Sbjct: 83 FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142
Query: 223 RAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYS 282
+ P T ++L+N EA+ + +M P+ VT N ++ + S
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKAS 202
Query: 283 KALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTS 342
+A++ + M +PD T+ V+ L K G D A+ L M + + E D+V +T+
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEA--DVVIYTT 260
Query: 343 IIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNG 402
II + + +F M +G++PN+V+YN+L+ ++G +A + +++ +
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320
Query: 403 LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAV 462
+ P++V++++L++A+ + + V+A ++++ M ++ P++ +YS+LI+ + + L EA
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380
Query: 463 EVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEM--RDIKLNTVAYNSAIG 520
+F M PN+V+ TL+ G C K + + L EM R + NTV YN+ I
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIK--GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438
Query: 521 SYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPL 580
G+ + A ++K M V PD +TY++L+ C+ + +AL + + K+
Sbjct: 439 GLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498
Query: 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALF 640
Y+ +I K G + + +F + + G P+VI YT M+ + E+A ALF
Sbjct: 499 DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALF 558
Query: 641 LEMETNNIEPDSIACSALMRA-FNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699
EM+ + P+S + L+RA G + + L+ E MR D+ MV+ ++
Sbjct: 559 REMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKE-MRSCGFV-GDASTISMVI--NM 614
Query: 700 LRD 702
L D
Sbjct: 615 LHD 617
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| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 128/491 (26%), Positives = 237/491 (48%)
Query: 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDML 222
YN+MI R +Q+ A + +M K P T N+L++ + A+ + D M+
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162
Query: 223 RAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYS 282
P T+ L++ EA+ + ++M G PDLVT+ V++ +
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222
Query: 283 KALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTS 342
AL+ M+ I D ++ VI L K D A++LF M K PD+ T++S
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIR--PDVFTYSS 280
Query: 343 IIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNG 402
+I G+ + + + ML + PN+V++N+L+ A+A G EA +F+E+ +
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340
Query: 403 LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAV 462
+ P+IV+Y SL+N + + +A+++F +M + P++V+Y+ LI+ + + + +
Sbjct: 341 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGM 400
Query: 463 EVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSY 522
E+FR+M + G+ N V+ TL+ + N V + N + YN+ +
Sbjct: 401 ELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 460
Query: 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTN 582
G+ EKA+ +++ ++K K+ PD TY ++ C+ + + + LK +
Sbjct: 461 CKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSL-SLKGVKPD 519
Query: 583 QV-YSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFL 641
+ Y+++IS + K+GL EA ++F MK G PD TY ++ A+ D + L
Sbjct: 520 VIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIK 579
Query: 642 EMETNNIEPDS 652
EM + D+
Sbjct: 580 EMRSCRFAGDA 590
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| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 2.5e-48, P = 2.5e-48
Identities = 134/510 (26%), Positives = 252/510 (49%)
Query: 157 CARNDI-YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAM 215
C N + YN++I + ++ +A G+ ++ KPD TY L+ + ++ +
Sbjct: 258 CDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGL 317
Query: 216 NIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAY 275
+ D+ML +PS + ++L+ G EAL + K++ + GV P+L +N ++ +
Sbjct: 318 EMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSL 377
Query: 276 KNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLP 335
G ++ +A F+ M +RP+ T++I+I + G+ D A+ M + +
Sbjct: 378 CKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKL-- 435
Query: 336 DIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVF 395
+ + S+I+ + G I +G M+ + L+P +V+Y +LM Y S G +AL ++
Sbjct: 436 SVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495
Query: 396 NEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSN 455
+E+ G+ P I ++T+LL+ R+ A ++FN M N+KPN V+Y+ +I+ Y
Sbjct: 496 HEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEE 555
Query: 456 GLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAY 515
G +++A E +EM + GI P+ S L+ G+ + + +LN + Y
Sbjct: 556 GDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICY 615
Query: 516 NSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMD 575
+ + G+ E+A+++ + M +R V D V Y VLI + G L EM D
Sbjct: 616 TGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHD 675
Query: 576 LKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEK 635
+ + +Y+S+I A SK G EA ++++M GC P+ +TYTA+++ A +
Sbjct: 676 RGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNE 735
Query: 636 ACALFLEMETNNIEPDSIACSALMRAFNKG 665
A L +M+ + P+ + + KG
Sbjct: 736 AEVLCSKMQPVSSVPNQVTYGCFLDILTKG 765
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8RWS8 | PP199_ARATH | No assigned EC number | 0.6747 | 0.9586 | 0.9866 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00025603001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (841 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 846 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-37 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-30 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-29 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-26 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 4e-37
Identities = 119/521 (22%), Positives = 233/521 (44%), Gaps = 39/521 (7%)
Query: 198 YNALISAHGRAGQWRWAMNIFDDMLRAA-VAPSRSTYNNLINACGSTGNWREALKVCKKM 256
YN L+ R G+ + +++ +DM + + + + AC +EA + K +
Sbjct: 377 YNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 257 TENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQY 316
P L T N+++S + AL L++ ++ D + +I K G+
Sbjct: 433 RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 317 DKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYN 376
D ++FH M E ++ TF ++I + GQ+ G + M ++ +KP+ V +N
Sbjct: 489 DAMFEVFHEMVNAGVE--ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 377 ALMAAYASHGMSKEALSVFNEIKKNG--LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMR 434
AL++A G A V E+K + PD ++ +L+ A + Q +A+EV+ M+
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606
Query: 435 INNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKV 494
N+K Y+ +++ G A+ ++ +M++ G++P+ V L+ G G
Sbjct: 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-- 664
Query: 495 NIDA---VLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYT 551
+D +L A + IKL TV+Y+S +G+ N ++KA+ LY+ +K K+ P T
Sbjct: 665 -LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 552 VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQV-YSSVISAYSKQGLIAEAESMFNMMKM 610
LI++ C ++ +AL L EM L + N + YS ++ A ++ + + K
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGL-CPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 611 SGCSPDVITY---TAMLHAYNTAEDWEKACAL---FLEMETNNIE-PDSIACSALM--RA 661
G P+++ T + +EKACAL + ++ + + ALM R
Sbjct: 783 DGIKPNLVMCRCITGL-----CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837
Query: 662 FNKGGQPSKVLLVAEFM----REQDITFSDSIFFEMVLACS 698
G + ++++ + D T + + + ++
Sbjct: 838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD 878
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Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 5e-32
Identities = 148/665 (22%), Positives = 265/665 (39%), Gaps = 107/665 (16%)
Query: 164 NMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLR 223
N M+ + R ++ A +F +M + D ++N L+ + +AG + A+ ++ ML
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 224 AAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSK 283
A V P T+ ++ CG + +V + G D+ N +++ Y
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 284 ALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSI 343
A F+ M R D + N +I + G+ + ++LF +MRE PD++T TS+
Sbjct: 241 ARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE--LSVDPDLMTITSV 294
Query: 344 IHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGL 403
I + G + + ++ G ++ N+L+ Y S G EA VF+ ++
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---- 350
Query: 404 CPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVE 463
D VS+T A+I Y NGL +A+E
Sbjct: 351 TKDAVSWT-----------------------------------AMISGYEKNGLPDKALE 375
Query: 464 VFREMEQDGIEPNIVSICTLLAACGRCGR-KVNIDAVLLAAEMRDIKLNTVAYNSAIGSY 522
+ MEQD + P+ ++I ++L+AC G V + LA I VA N+ I Y
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA-NALIEMY 434
Query: 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEM-MDLKIPLT 581
+KA+ ++ + ++ V +++T +I+ +R EAL F +M + LK
Sbjct: 435 SKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQMLLTLK---P 487
Query: 582 NQV-YSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALF 640
N V + +SA ++ G + + + + +G D A+L Y A F
Sbjct: 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547
Query: 641 LEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL 700
N+ E D ++ + L+ + G+ S + + M E + + F ++ ACS
Sbjct: 548 -----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602
Query: 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLH------LLGKSGRIESMMKLFFKIVSS--- 751
++ ME + + L H LLG++G++ K+ +
Sbjct: 603 GMVTQGLEYFHSMEEKYSITP-----NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP 657
Query: 752 ---GA------------------------EANFNTYSILLKNLLA-AGNWRKYIEVLQWM 783
GA + N Y ILL NL A AG W + V + M
Sbjct: 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
Query: 784 EDAGI 788
+ G+
Sbjct: 718 RENGL 722
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 6e-30
Identities = 139/559 (24%), Positives = 232/559 (41%), Gaps = 83/559 (14%)
Query: 138 GAINHSNQVFNWMKNQKNYCARNDI--YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDA 195
G + + VF+ M R D +N MI + + + + LFF M++ PD
Sbjct: 236 GDVVSARLVFDRM-------PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 196 ETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKK 255
T ++ISA G R + +++ A S N+LI S G+W EA KV +
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348
Query: 256 MTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQ 315
M D V+ ++S Y+ KAL + LM+ N+ PD T V+ LG
Sbjct: 349 METK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404
Query: 316 YDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSY 375
D + L H + E++ GL +V
Sbjct: 405 LDVGVKL-HELAERK------------------------------------GLISYVVVA 427
Query: 376 NALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRI 435
NAL+ Y+ +AL VF+ I + D++S+TS++ + + +A F M +
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQM-L 482
Query: 436 NNLKPNLVSYSALIDAYGSNGLLAEAVEVFRE-----MEQDGIEPNIVSICTLLAACGRC 490
LKPN V+ A + A G L E+ + DG PN LL RC
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRC 537
Query: 491 GRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTY 550
GR +N + +D+ V++N + Y+ G+ A+ L+ M + V PD VT+
Sbjct: 538 GR-MNYAWNQFNSHEKDV----VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
Query: 551 TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQV--YSSVISAYSKQGLIAEAESMFNMM 608
L+ +C R ++ L + M+ K +T + Y+ V+ + G + EA + N M
Sbjct: 593 ISLLCACSRSGMVTQGLEYF-HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
Query: 609 KMSGCSPDVITYTAMLHA---YNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKG 665
+ +PD + A+L+A + E E A E++ N++ + C+ +
Sbjct: 652 PI---TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCN----LYADA 704
Query: 666 GQPSKVLLVAEFMREQDIT 684
G+ +V V + MRE +T
Sbjct: 705 GKWDEVARVRKTMRENGLT 723
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-29
Identities = 99/441 (22%), Positives = 187/441 (42%), Gaps = 45/441 (10%)
Query: 405 PDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEV 464
P + ++ L++ SQ A V +++ LK + Y+ LI +G + EV
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 465 FREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMN 524
F EM G+E N+ + L+ C R G+ VA
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQ--------------------VA---------- 524
Query: 525 VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLT--N 582
KA Y M+ + V PD V + LIS+C + A L EM P+ +
Sbjct: 525 -----KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGC--SPDVITYTAMLHAYNTAEDWEKACALF 640
+++ A + G + A+ ++ M+ +P+V YT +++ + DW+ A +++
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV--YTIAVNSCSQKGDWDFALSIY 637
Query: 641 LEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL 700
+M+ ++PD + SAL+ G K + + R+Q I + ++ ACS
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTY 760
++WK ++L + ++ ++ +N L+ L + ++ +++ ++ G N TY
Sbjct: 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757
Query: 761 SILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIES 820
SILL + +++L ++ GI+P+ M R I R E A + E + S
Sbjct: 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR--FEKACALGEPVVS 815
Query: 821 LRMKSGDPSFDQQSTSSSSSI 841
SG P + + TS + +
Sbjct: 816 --FDSGRPQIENKWTSWALMV 834
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 3e-28
Identities = 94/433 (21%), Positives = 186/433 (42%), Gaps = 40/433 (9%)
Query: 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDML 222
+NM++ + A ID A + +Q+ K D + Y LIS ++G+ +F +M+
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 223 RAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYS 282
A V + T+ LI+ C G Q +
Sbjct: 500 NAGVEANVHTFGALIDGCARAG-----------------------------------QVA 524
Query: 283 KALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTS 342
KA + +M+ N++PD N +I + G D+A D+ M+ + PD +T +
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584
Query: 343 IIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNG 402
++ + GQ++ K V+ + +K Y + + + G ALS+++++KK G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 403 LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAV 462
+ PD V +++L++ G + KA E+ R +K VSYS+L+ A + +A+
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704
Query: 463 EVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRD--IKLNTVAYNSAIG 520
E++ +++ + P + ++ L+ A C A+ + +EM+ + NT+ Y+ +
Sbjct: 705 ELYEDIKSIKLRPTVSTMNALITAL--CEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 521 SYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL-KIP 579
+ + + + L K+ + P+ V + C R + ALG D +
Sbjct: 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ 822
Query: 580 LTNQVYSSVISAY 592
+ N+ S + Y
Sbjct: 823 IENKWTSWALMVY 835
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 120/543 (22%), Positives = 215/543 (39%), Gaps = 78/543 (14%)
Query: 167 IRLHARHNQIDKARGLFFEMQKWRC--KPDAETYNALISAHGRAGQWRWAMNIFDDMLRA 224
I + +A LF E+ + C A TY+AL+ A R ++ + +
Sbjct: 94 IEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 225 AVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKA 284
P + N ++ G +A ++ +M E +L + ++ + Y +A
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREA 208
Query: 285 LSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSII 344
+ F M + T +++ LG +A H K D ++I
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSA-RAGQQLHCCVLKTGVV-GDTFVSCALI 266
Query: 345 HLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIK----- 399
+YS G IE+ + VF+ M + V++N+++A YA HG S+EAL ++ E++
Sbjct: 267 DMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 400 ------------------------------KNGLCPDIVSYTSLLNAYGRSQQPVKAREV 429
+ G DIV+ T+L++ Y + + AR V
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 430 FNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGR 489
F+ M NL+S++ALI YG++G +AVE+F M +G+ PN V+ +L+AC
Sbjct: 383 FDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438
Query: 490 CG-RKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV 548
G + + +E IK + Y I G ++A A+ +++ P
Sbjct: 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVN 495
Query: 549 TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMM 608
+ L+++ CR+ + E E + P Y +++ Y+ G AEA + +
Sbjct: 496 MWAALLTA-CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554
Query: 609 KMSG------CS-------PDVITYTAMLHAYNTAEDWEKACALFLEM-------ETNNI 648
K G C+ LH + E ++K L E+ E N +
Sbjct: 555 KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQS-REIYQKLDELMKEISEYGYVAEENEL 613
Query: 649 EPD 651
PD
Sbjct: 614 LPD 616
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 5e-25
Identities = 101/421 (23%), Positives = 176/421 (41%), Gaps = 66/421 (15%)
Query: 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAE--TYNALISAHGRAGQWRWAMNIFDD 220
N ++ +H + + AR LF EM P+ ++ +I AG +R A +F +
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 221 MLRAAVAPSRSTYNNLINACGSTGNWR--EALKVCKKMTENGVGPDLVTHNIVLSAYKNG 278
M T+ ++ A G+ R + L C T GV D ++ Y
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKC 272
Query: 279 AQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSEC----- 333
A F+ M T N ++ G ++A+ L++ MR+
Sbjct: 273 GDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 334 ---------------------------LP-DIVTFTSIIHLYSVNGQIENCKGVFNTMLA 365
P DIV T+++ LYS G++E+ + VF+ M
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP- 387
Query: 366 EGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVK 425
+ N++S+NAL+A Y +HG +A+ +F + G+ P+ V++ ++L+A S +
Sbjct: 388 ---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444
Query: 426 AREVFNMM-RINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLL 484
E+F M + +KP + Y+ +I+ G GLL EA + R +P + LL
Sbjct: 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALL 501
Query: 485 AACGRCGRKVNIDAVLLAAE----MRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKK 540
AC R + N++ LAAE M KLN Y + Y + G +A + + +K+
Sbjct: 502 TAC-RIHK--NLELGRLAAEKLYGMGPEKLNN--YVVLLNLYNSSGRQAEAAKVVETLKR 556
Query: 541 R 541
+
Sbjct: 557 K 557
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 3e-18
Identities = 72/353 (20%), Positives = 161/353 (45%), Gaps = 10/353 (2%)
Query: 449 IDAYGS---NGLLAEAVEVFREMEQDG-IEPNIVSICTLLAACGRCGRKVNIDAVLLAAE 504
IDAY +G + + +++ +ME+ G ++ + + AC + ++ +A A
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK--QRAVKEAFRFAKL 431
Query: 505 MRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYS 564
+R+ L+T +N + + + + A+ + + +++ + D YT LIS+C + +
Sbjct: 432 IRNPTLST--FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489
Query: 565 EALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAML 624
EM++ + + ++I ++ G +A+A + +M+ PD + + A++
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 625 HAYNTAEDWEKACALFLEM--ETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQD 682
A + ++A + EM ET+ I+PD I ALM+A GQ + V + + E +
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 683 ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742
I + ++ V +CS DW + + M+ + L+ + G +G ++
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 743 KLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMF 795
++ G + +YS L+ A NW+K +E+ + ++ ++P+
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-17
Identities = 123/608 (20%), Positives = 238/608 (39%), Gaps = 103/608 (16%)
Query: 224 AAVAPSRSTY---NNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQ 280
+ A S S+ N+ + A S G +ALK+ + M E V D + + +
Sbjct: 42 SVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA 101
Query: 281 YSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTF 340
+ ++ N ++ V+ G+ A +F M E+ D+ ++
Sbjct: 102 VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER------DLFSW 155
Query: 341 TSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALM---AAYASHGMSKEALSVFNE 397
++ Y+ G + +++ ML G++P++ ++ ++ +E V
Sbjct: 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE---VHAH 212
Query: 398 IKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGL 457
+ + G D+ +L+ Y + V AR VF+ M + +S++A+I Y NG
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGE 268
Query: 458 LAEAVEVFREMEQDGIEPNIVSICTLLAACG-----RCGRKVNIDAVLLAAEMRDIKLNT 512
E +E+F M + ++P++++I ++++AC R GR+++ V ++
Sbjct: 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV-----KTGFAVDV 323
Query: 513 VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE 572
NS I Y+++G + +A ++ M+ + D+V++T
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWT--------------------- 358
Query: 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAED 632
++IS Y K GL +A + +M+ SPD IT ++L A D
Sbjct: 359 --------------AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404
Query: 633 WEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDI--------- 683
+ L E + + +AL+ ++K K L V + E+D+
Sbjct: 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464
Query: 684 ------TFSDSIFFEMVLA---------CSLLRDWKTTIDLIKQMEPSFHVVSIG----- 723
F IFF +L + L L+ E HV+ G
Sbjct: 465 LRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524
Query: 724 -LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQW 782
L N LL L + GR+ F + E + +++ILL +A G +E+
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579
Query: 783 MEDAGIQP 790
M ++G+ P
Sbjct: 580 MVESGVNP 587
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 3e-16
Identities = 72/355 (20%), Positives = 153/355 (43%), Gaps = 13/355 (3%)
Query: 307 IYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAE 366
I LV G++ +A++LF + LP T+ +++ I K V+ + +
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLP-ASTYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 367 GLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKA 426
G +P+ N ++ + GM +A +F+E+ + ++ S+ +++ + +A
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREA 208
Query: 427 REVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAA 486
+F M + ++ ++ A G ++ + + G+ + C L+
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268
Query: 487 CGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD 546
+CG +I+ + K TVA+NS + Y G E+A+ LY M+ V D
Sbjct: 269 YSKCG---DIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606
T++++I RL+ A ++ PL ++++ YSK G + +A ++F+
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 607 MMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA 661
M ++I++ A++ Y KA +F M + P+ + A++ A
Sbjct: 385 RMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 2e-15
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 370 PNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGR 419
P++V+YN L+ Y G +EAL +FNE+KK G+ P++ +Y+ L++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 5e-14
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR 559
+ V YN+ I Y G+ E+A+ L+ MKKR + P+ TY++LI C+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 4e-12
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 405 PDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAY 452
PD+V+Y +L++ Y + + +A ++FN M+ +KPN+ +YS LID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 7e-12
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 585 YSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAY 627
Y+++I Y K+G + EA +FN MK G P+V TY+ ++
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 3e-11
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 440 PNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGR 489
P++V+Y+ LID Y G + EA+++F EM++ GI+PN+ + L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 5e-11
Identities = 70/336 (20%), Positives = 145/336 (43%), Gaps = 42/336 (12%)
Query: 157 CARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAET--YNALISAHGRAGQWRWA 214
CA D+Y+ + I+ AR +F M P+ T +N++++ + G A
Sbjct: 263 CALIDMYS-------KCGDIEDARCVFDGM------PEKTTVAWNSMLAGYALHGYSEEA 309
Query: 215 MNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSA 274
+ ++ +M + V+ + T++ +I A + + G D+V + ++
Sbjct: 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369
Query: 275 YKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECL 334
Y + A + F+ M N+ + N +I G+ KA+++F M +
Sbjct: 370 YSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEG--VA 423
Query: 335 PDIVTFTSIIHLYSVNGQIENCKGVFNTMLA-EGLKPNIVSYNALMAAYASHGMSKEALS 393
P+ VTF +++ +G E +F +M +KP + Y ++ G+ EA +
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483
Query: 394 VFNEIKKNGLCPDIVSYTSLLNAYGRSQQ-----PVKAREVFNM--MRINNLKPNLVSYS 446
+ I++ P + + +LL A R + + A +++ M ++NN Y
Sbjct: 484 M---IRRAPFKPTVNMWAALLTA-CRIHKNLELGRLAAEKLYGMGPEKLNN-------YV 532
Query: 447 ALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICT 482
L++ Y S+G AEA +V +++ G+ ++ CT
Sbjct: 533 VLLNLYNSSGRQAEAAKVVETLKRKGL--SMHPACT 566
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 7e-11
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGR 207
YN +I + + ++++A LF EM+K KP+ TY+ LI +
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 335 PDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYA 383
PD+VT+ ++I Y G++E +FN M G+KPN+ +Y+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 86/381 (22%), Positives = 161/381 (42%), Gaps = 40/381 (10%)
Query: 425 KAREVFNMMRIN-NLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTL 483
+A E+F ++ +Y AL++A + + V+ +E G EP+ + +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 484 LAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKV 543
L +CG + IDA L EM + N ++ + IG ++ G Y +A AL++ M +
Sbjct: 165 LLMHVKCG--MLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 544 MPDSVTYTVLISSCCRLSRYSEALG--FLDEMMD---LKIPLTNQVYSS--VISAYSKQG 596
+ T+ V++ R S LG + + LK + + S +I YSK G
Sbjct: 221 DAEPRTFVVML-------RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACS 656
I +A +F+ M + + +ML Y E+A L+ EM + + D S
Sbjct: 274 DIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329
Query: 657 ALMRAFNKGG------QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLI 710
++R F++ Q L+ F DI +++ ++ + D + D
Sbjct: 330 IMIRIFSRLALLEHAKQAHAGLIRTGF--PLDIV-ANTALVDLYSKWGRMEDARNVFD-- 384
Query: 711 KQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAA 770
P +++S N L+ G GR +++F ++++ G N T+ +L +
Sbjct: 385 --RMPRKNLIS---WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439
Query: 771 GNWRKYIEVLQWM-EDAGIQP 790
G + E+ Q M E+ I+P
Sbjct: 440 GLSEQGWEIFQSMSENHRIKP 460
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 615 PDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK 664
PDV+TY ++ Y E+A LF EM+ I+P+ S L+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 193 PDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINAC 240
PD TYN LI + + G+ A+ +F++M + + P+ TY+ LI+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 298 PDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIH 345
PD T+N +I K G+ ++A+ LF+ M K+ P++ T++ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 228 PSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAY 275
P TYN LI+ G EALK+ +M + G+ P++ T++I++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 6e-09
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 436 NNLKPNLVSYSALIDAYGSNGLLAEAVEVFREME 469
LKP++V+Y+ LID G + EAVE+ EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-07
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 263 PDLVTHNIVLSAY-KNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVK 312
PD+VT+N ++ Y K G + +AL F MK I+P+ T++I+I L K
Sbjct: 1 PDVVTYNTLIDGYCKKG-KVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 68/311 (21%), Positives = 125/311 (40%), Gaps = 51/311 (16%)
Query: 130 LIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKW 189
LI ++ G I + VF+ M +K A +N M+ +A H ++A L++EM+
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMP-EKTTVA----WNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 190 RCKPDAETYNALISAHGRAGQW------------------------------RW-----A 214
D T++ +I R +W A
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 215 MNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSA 274
N+FD M R + ++N LI G+ G +A+++ ++M GV P+ VT VLSA
Sbjct: 380 RNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 275 YKNGAQYSKALSYFELM-KGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSEC 333
+ + F+ M + I+P + +I L + G D+A + +R+
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI-----RRAPF 490
Query: 334 LPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALS 393
P + + +++ ++ +E + + G + + +Y L+ Y S G EA
Sbjct: 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAK 549
Query: 394 VFNEIKKNGLC 404
V +K+ GL
Sbjct: 550 VVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 443 VSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNI 477
V+Y+ LID G + EA+E+F+EM++ GIEP++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-07
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 443 VSYSALIDAYGSNGLLAEAVEVFREMEQDGI 473
V+Y++LI Y G L EA+E+F+EM++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 373 VSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDI 407
V+YN L+ G +EAL +F E+K+ G+ PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 541 RKVMPDSVTYTVLISSCCRLSRYSEALGFLDEM 573
+ + PD VTY LI CR R EA+ LDEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 584 VYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDV 617
Y+++I K G + EA +F MK G PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 373 VSYNALMAAYASHGMSKEALSVFNEIKKNGL 403
V+YN+L++ Y G +EAL +F E+K+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 162 IYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDA 195
YN +I + ++++A LF EM++ +PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-05
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 232 TYNNLINACGSTGNWREALKVCKKMTENGVGPD 264
TYN LI+ G EAL++ K+M E G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDI 337
T+N +I L K G+ ++A++LF M+E+ PD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERG--IEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 231 STYNNLINACGSTGNWREALKVCKKMTENGV 261
TYN+LI+ G EAL++ K+M E GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 4e-05
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 191 CKPDAETYNALISAHGRAGQWRWAMNIFDDM 221
KPD TYN LI RAG+ A+ + D+M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 442 LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEP 475
L +Y+AL+ A G A+ V EM+ G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 584 VYSSVISAYSKQGLIAEAESMFNMMKMSGC 613
Y+S+IS Y K G + EA +F MK G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 408 VSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPN 441
V+Y +L++ ++ + +A E+F M+ ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 618 ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS 652
+TY ++ A E+A LF EM+ IEPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 548 VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLT 581
VTY LI C+ R EAL EM + I
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVAPS 229
TYN LI +AG+ A+ +F +M + P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 548 VTYTVLISSCCRLSRYSEALGFLDEMMDLKI 578
VTY LIS C+ + EAL EM + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 367 GLKPNIVSYNALMAAYASHGMSKEALSVFNE 397
GLKP++V+YN L+ G EA+ + +E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.3 bits (100), Expect = 3e-04
Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 5/237 (2%)
Query: 375 YNALMAAYASHGMSKEALSVFNE-IKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMM 433
A +A G EAL + E ++ L A + + +A E+
Sbjct: 26 LEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKA 85
Query: 434 RINNLKPNL-VSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGR 492
L PNL + L + G EA+E+ + +P++ L A G
Sbjct: 86 LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD 145
Query: 493 KVNIDAVLLAAEMRDIKLNT--VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTY 550
+ A D +LN A + +G YE+A+ L + K D+
Sbjct: 146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL 205
Query: 551 TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNM 607
L +L +Y EAL + ++ ++L P + ++ + G EA
Sbjct: 206 LNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 69/342 (20%), Positives = 128/342 (37%), Gaps = 51/342 (14%)
Query: 516 NSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGF----LD 571
NS + + + G+ E+A+ L + M++ +V D Y L C E L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 572 EMMDLKIPLTNQVYSS---------------------------VISAYSKQGLIAEAESM 604
L + L N + S ++ Y+K G EA +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 605 FNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK 664
++ M +G PDV T+ +L D + + + E D +AL+ + K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 665 GGQPSKVLLVAEFMREQD-ITFSDSI--FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS 721
G LV + M +D I+++ I +FE L + T +L ++P +++
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL--SVDPD--LMT 290
Query: 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQ 781
I + LLG M +V +G + + + L++ L+ G+W + +V
Sbjct: 291 ITSVISACELLGDERLGREMHGY---VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 782 WMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLRM 823
ME +D VS+ G E + + +E+ +
Sbjct: 348 RME----------TKDAVSWTAMISGYEKNGLPDKALETYAL 379
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 611 SGCSPDVITYTAMLHAYNTAEDWEKACALFLEME 644
G PDV+TY ++ A ++A L EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 197 TYNALISAHGRAGQWRWAMNIFDDMLR 223
TYN+LIS + +AG+ A+ +F +M
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 232 TYNNLINACGSTGNWREALKVCKKMTENGVGP 263
TYN L+ A G+ AL V ++M +G+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 5e-04
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 401 NGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMR 434
GL PD+V+Y +L++ R+ + +A E+ + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 5e-04
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 759 TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP 790
TY+ LL L AG+ + VL+ M+ +G++P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (98), Expect = 5e-04
Identities = 52/296 (17%), Positives = 100/296 (33%), Gaps = 10/296 (3%)
Query: 174 NQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRS-T 232
+ A + E A ++ G+ A+ + ++ L +
Sbjct: 2 KDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGL 61
Query: 233 YNNLINACGSTGNWREALKVCKKMTENGVGPDL-VTHNIVLSAYKNGAQYSKALSYFELM 291
L A G EAL++ +K E + P+L + + +Y +AL E
Sbjct: 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 292 KGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNG 351
+ PD + + L +LG Y++A++L+ E E ++ L G
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 352 QIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYT 411
+ E + L + + L Y G +EAL + + + + +
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP-DNAEALY 240
Query: 412 SLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFRE 467
+L + +A E + L P+L LLAEA+E+ +
Sbjct: 241 NLALLLLELGRYEEALEALE--KALELDPDL-----YNLGLALLLLLAEALELLEK 289
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 407 IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKP 440
+ +Y +LL A ++ P A V M+ + LKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 338 VTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNI 372
VT+ ++I G++E +F M G++P++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 162 IYNMMIRLHARHNQIDKARGLFFEMQKWRC 191
YN +I + + ++++A LF EM++
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 302 THNIVIYCLVKLGQYDKAIDLFHSMREK 329
T+N +I K G+ ++A++LF M+EK
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 372 IVSYNALMAAYASHGMSKEALSVFNEIKKNGL 403
+ +YNAL+ A A G AL+V E+K +GL
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 408 VSYTSLLNAYGRSQQPVKAREVFNMMRINNL 438
V+Y SL++ Y ++ + +A E+F M+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 846 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.98 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.75 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.7 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.7 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.53 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.52 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.51 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.5 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.49 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.47 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.46 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.46 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.43 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.41 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.39 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.37 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.32 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.3 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.29 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.27 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.24 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.16 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.09 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.04 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.03 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.03 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.02 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.99 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.93 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.91 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.89 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.88 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.87 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.84 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.81 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.75 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.75 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.73 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.72 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.67 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.66 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.49 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.49 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.4 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.39 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.37 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.28 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.26 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.24 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.24 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.18 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.17 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.17 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.16 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.15 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.13 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.1 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.07 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.06 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.0 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.97 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.97 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.94 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.88 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.87 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.86 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.85 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.83 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.81 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.8 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.78 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.78 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.68 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.68 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.67 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.64 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.63 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.63 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.61 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.57 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.56 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.55 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.52 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.51 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.48 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.46 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.43 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.42 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.41 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.37 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.3 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.24 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.21 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.2 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.18 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.15 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.11 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.08 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.02 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.01 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.95 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.91 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.9 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.87 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.87 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.87 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.85 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.81 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.74 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.74 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.68 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.66 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.64 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.54 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.51 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.41 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.41 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.37 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.37 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.35 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.3 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.23 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.19 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.09 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.09 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.97 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.96 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.95 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.78 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.69 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.63 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.53 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.5 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.44 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.15 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.15 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.1 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.09 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.09 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.06 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.05 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.03 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.93 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.92 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.9 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.88 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.78 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.75 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.67 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.55 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.47 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.19 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.05 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.91 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.9 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.85 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.73 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.63 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.62 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.54 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.16 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.08 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.04 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.02 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.98 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.93 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.81 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.79 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.7 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.69 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.52 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 92.34 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.23 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.19 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.95 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.89 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 91.69 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.55 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 90.93 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 90.64 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 90.58 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.23 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 90.2 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.06 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.93 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.67 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.64 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 89.51 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 89.24 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.02 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.98 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.7 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.61 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 88.6 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.99 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.75 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.41 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.2 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.13 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.66 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.55 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.5 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 86.43 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.42 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.32 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.25 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.9 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.43 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 85.36 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.23 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 85.1 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.51 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.43 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.39 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.33 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 84.19 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.42 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.39 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.27 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 83.0 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.9 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.55 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 82.35 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.29 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.24 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.23 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.16 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.05 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.95 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.64 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.56 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 81.27 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 80.79 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.54 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.49 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-86 Score=784.53 Aligned_cols=709 Identities=19% Similarity=0.273 Sum_probs=664.1
Q ss_pred HHHHHHHccCCcccHHHHHHHHhcc---cCCCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHc
Q 003122 97 EVVERVLELKHYEDVEGVLNRWVGR---FARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARH 173 (846)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~ 173 (846)
.++..+...+...++..+++.+... .+...+..+++.+...+.++.|.+++..+.+.. ..++..++|+++..|++.
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhC
Confidence 4455555555666666777766542 344457788999999999999999999998654 467888999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 174 NQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVC 253 (846)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 253 (846)
|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..++++.+.+++
T Consensus 135 g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 135 GELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred CChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 999999999999985 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003122 254 KKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSEC 333 (846)
Q Consensus 254 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 333 (846)
..|.+.|+.||..+||.|+.+|++.|++++|.++|++|. .||.++||.+|.+|++.|++++|+++|++|...+.
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~-- 284 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSV-- 284 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999999999999997 47899999999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 003122 334 LPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSL 413 (846)
Q Consensus 334 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 413 (846)
.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.+
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~l 360 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAM 360 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999999999964 799999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 414 LNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRK 493 (846)
Q Consensus 414 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 493 (846)
+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+++.|+.+|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 003122 494 VNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEM 573 (846)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 573 (846)
++|.++|+.|.. +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+
T Consensus 441 ~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 441 DKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 999999999874 4888999999999999999999999999986 58999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 574 MDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI 653 (846)
Q Consensus 574 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 653 (846)
.+.|+.++..++++|+++|+++|++++|.++|+.+ .||..+||.|+.+|++.|+.++|+++|++|.+.|+.||..
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999987 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMR-EQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|.++++++++.|++++|.+++++|. ..++..+|++|+.+|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac 667 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 68999999999999999999999999999999995 234678999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-----HHHHHHHHhcC
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMF-----RDIVSFAQTRG 806 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-----~~l~~~~~~~~ 806 (846)
..+|+.+.|+...+++++ ++|+ ...|..|++.|...|+|++|.++++.|.+.|+++++++. ..+..|..++.
T Consensus 668 ~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~ 745 (857)
T PLN03077 668 RIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDE 745 (857)
T ss_pred HHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCC
Confidence 999999999999999999 9995 557888889999999999999999999999999998743 23457788899
Q ss_pred CcchHHHHHHHHHHHhhccCCCCCCCCcc
Q 003122 807 GAEYAAIIQERIESLRMKSGDPSFDQQST 835 (846)
Q Consensus 807 ~~~~a~~~~~~l~~l~~~~~~~~~~~~~~ 835 (846)
.|++..+||+.+++|..++++.||.|++.
T Consensus 746 ~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 746 SHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 99999999999999999999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-78 Score=710.87 Aligned_cols=667 Identities=19% Similarity=0.263 Sum_probs=635.4
Q ss_pred CCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003122 124 RKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALIS 203 (846)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 203 (846)
...++.++..+++.|.+++|+.+|+.|... +.+++..+|..++..|.+.+.++.|..++..+.+.+..++...+|+|+.
T Consensus 51 ~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 51 THDSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 345778899999999999999999999864 5688999999999999999999999999999999998999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHH
Q 003122 204 AHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSK 283 (846)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 283 (846)
+|++.|+++.|.++|++|. .||..+||+++.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+++..
T Consensus 130 ~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 9999999999999999996 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 284 ALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTM 363 (846)
Q Consensus 284 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (846)
+.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.. ||.++||++|.+|++.|++++|.++|++|
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 68999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH
Q 003122 364 LAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV 443 (846)
Q Consensus 364 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 443 (846)
...|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 57899
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003122 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYM 523 (846)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 523 (846)
+|+.+|.+|++.|++++|+++|++|.+.|+.||..|++.++.+|++.|+.+.|.+++..+.+.|+.++..+||.||++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 524 NVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAES 603 (846)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 603 (846)
+.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. +++||..+|+.++.+|++.|+++.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999974 5888999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003122 604 MFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDI 683 (846)
Q Consensus 604 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (846)
++..+.+.|+.+|..+++.|+++|++.|++++|.++|+++ .||..+|+.++.+|++.|+.++|+++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc-cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHH
Q 003122 684 TFSDSIFFEMVLACSLLRDWKTTIDLIKQME-PSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSI 762 (846)
Q Consensus 684 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 762 (846)
.||..+|..++.+|.+.|++++|.++++.|. ..+..++...|+.++.+|++.|++++|.+++++|- ..||..+|..
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999998 45556678899999999999999999999999983 7899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003122 763 LLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 763 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
|+.+|...|+.+.+....+++.+ +.|+ ...|..+...|...|+.+++..+.+.+++
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999999999999999887 5665 45677778889999999888888877766
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=613.19 Aligned_cols=545 Identities=18% Similarity=0.266 Sum_probs=429.2
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003122 126 NFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAH 205 (846)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 205 (846)
.+..++..+++.|++++|+++|++|.+.+..+++..+++.++..|.+.|.+++|..+|..|.. ||..+|+.++.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 355666777777888888888888877655556666777777888888888888888877764 7788888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHH
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKAL 285 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 285 (846)
++.|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 286 SYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLA 365 (846)
Q Consensus 286 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (846)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+.++.||..+|++++.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888764445557888888888888888888888888888888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHH
Q 003122 366 EGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSY 445 (846)
Q Consensus 366 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 445 (846)
.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 003122 446 SALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNV 525 (846)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 525 (846)
+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|...|+.||..+|+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888777778888888888888888888888888888888778888888888888888888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 526 GEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMF 605 (846)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 605 (846)
|++++|.++|.+|.+.|+.||..+|+.++..|. +++++|..+.+.+...+. +......+..++|..+|
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTSWALMVY 835 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHHHHHHHH
Confidence 888888888888888888888888887775543 245555555444432110 01111223456799999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003122 606 NMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF 685 (846)
Q Consensus 606 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (846)
++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.|++++.+. .++|..++++|...|+.|
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 999999999999999999988888899999999999988888888999999999988432 468999999999999887
Q ss_pred CHH
Q 003122 686 SDS 688 (846)
Q Consensus 686 ~~~ 688 (846)
+..
T Consensus 914 ~~~ 916 (1060)
T PLN03218 914 SVS 916 (1060)
T ss_pred Ccc
Confidence 764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=599.28 Aligned_cols=548 Identities=22% Similarity=0.332 Sum_probs=486.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 003122 191 CKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAV-APSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHN 269 (846)
Q Consensus 191 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 269 (846)
..++...|..++..|++.|++++|+++|+.|.+.|+ .++..+++.++..|++.|.+++|+.+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356788889999999999999999999999999886 46777888899999999999999999988864 8999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 003122 270 IVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSV 349 (846)
Q Consensus 270 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 349 (846)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+.. ||..+|+.||.+|++
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~--PdvvTynaLI~gy~k 519 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE--ANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876544 899999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCChHHHH
Q 003122 350 NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKK--NGLCPDIVSYTSLLNAYGRSQQPVKAR 427 (846)
Q Consensus 350 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~A~ 427 (846)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++|+.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999976 678899999999999999999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003122 428 EVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRD 507 (846)
Q Consensus 428 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 507 (846)
++|+.|.+.|+.|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.++|.+++..|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 508 IKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS 587 (846)
Q Consensus 508 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 587 (846)
+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ 667 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 667 (846)
++.+|++.|++++|.++|++|.+.|+.||..+|+.|+..|. +++++|..+.+.+.... + .......+.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w 827 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKW 827 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccch
Confidence 99999999999999999999999999999999999986654 35677776665554311 0 111112233
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
.++|+.+|++|++.|+.|+..+|..++.+++..+..+.+..+++.+......++..+|+.|++++.+. .++|..++++
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 46799999999999999999999999988888888999999998887666666788899999988432 4689999999
Q ss_pred HHhcCCCcCHH
Q 003122 748 IVSSGAEANFN 758 (846)
Q Consensus 748 ~~~~g~~p~~~ 758 (846)
|.+.|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999999764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-64 Score=576.25 Aligned_cols=521 Identities=18% Similarity=0.244 Sum_probs=435.1
Q ss_pred CCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHH
Q 003122 262 GPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTN-IRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTF 340 (846)
Q Consensus 262 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (846)
..+..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.++++.++++.|.+++..|...+.. ||..+|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~--~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE--PDQYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--cchHHH
Confidence 3466677777777777777777777777777543 5667777777777777777777777777777665433 666777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 003122 341 TSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRS 420 (846)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 420 (846)
+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 777777777777777777776664 3566666666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 421 QQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVL 500 (846)
Q Consensus 421 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 500 (846)
|..+.+.+++..+.+.|+.+|..+|+.||++|++.|++++|.++|++|.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------------------------------- 286 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------------------------------- 286 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------------------------------
Confidence 6666666666666666666666666666666666666666666666553
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 003122 501 LAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPL 580 (846)
Q Consensus 501 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 580 (846)
.+|.++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+++
T Consensus 287 --------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 287 --------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred --------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 237788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMR 660 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 660 (846)
|..+|++|+++|+++|++++|.++|++|.+ ||..+||.|+.+|++.|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999974 7999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 003122 661 AFNKGGQPSKVLLVAEFMRE-QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 739 (846)
+|++.|+.++|.++|+.|.+ .|+.|+..+|.+++++|++.|++++|.++++++.. .++..+|+.|+.+|..+|+++
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~---~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF---KPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999986 69999999999999999999999999999998752 336678999999999999999
Q ss_pred HHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh-----HHHHHHHHHhcCCcchHHH
Q 003122 740 SMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGM-----FRDIVSFAQTRGGAEYAAI 813 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-----~~~l~~~~~~~~~~~~a~~ 813 (846)
.|..+++++++ +.|+ ..+|..|+++|.+.|+|++|.++++.|.+.|+++.++. -..+..|..++..|++..+
T Consensus 512 ~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 512 LGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 99999999998 8895 56999999999999999999999999999999877663 1233567788889999999
Q ss_pred HHHHHHHHhhccCCCCCCCCccC
Q 003122 814 IQERIESLRMKSGDPSFDQQSTS 836 (846)
Q Consensus 814 ~~~~l~~l~~~~~~~~~~~~~~~ 836 (846)
||+++.+|..++++.||.|++..
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcch
Confidence 99999999999999999998653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=564.82 Aligned_cols=511 Identities=20% Similarity=0.317 Sum_probs=464.5
Q ss_pred CCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003122 124 RKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALIS 203 (846)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 203 (846)
...++.++..+.+.|++++|+++|+||....++.++..+|+.++.+|++.++++.|..++..|.+.|+.||..+|+.|+.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 33577888999999999999999999998777789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHH
Q 003122 204 AHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSK 283 (846)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 283 (846)
+|++.|+++.|.++|++|. .||..+||+++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999996 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 284 ALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTM 363 (846)
Q Consensus 284 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (846)
+.+++..+.+.|+.||..+++.|+++|++.|++++|.++|++|.. +|+++|+.|+.+|++.|++++|.++|++|
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 58999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH
Q 003122 364 LAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV 443 (846)
Q Consensus 364 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 443 (846)
.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|++|+++|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 47999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCccCHHHHHHHHHHH
Q 003122 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEM-RDIKLNTVAYNSAIGSY 522 (846)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 522 (846)
+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 58899999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAE 602 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 602 (846)
++.|++++|.+++++| +..|+..+|+.|+.+|...|+.+.|..+++++.+.+ +.+..+|..|+++|++.|++++|.
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHH
Confidence 9999999999998876 457899999999999999999999999999987654 445678999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHH---HHHH----h----cCCHHHHHHHHHHHHHCCCCCCH
Q 003122 603 SMFNMMKMSGCSPD-VITYTAML---HAYN----T----AEDWEKACALFLEMETNNIEPDS 652 (846)
Q Consensus 603 ~~~~~~~~~~~~p~-~~~~~~l~---~~~~----~----~g~~~~A~~~~~~~~~~g~~p~~ 652 (846)
++++.|.+.|+... ..+|..+. +.+. . ..-++...++..+|.+.|..||.
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999887533 23332111 0000 0 01134455667777777777774
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=411.80 Aligned_cols=666 Identities=13% Similarity=0.085 Sum_probs=397.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003122 129 FLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRA 208 (846)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 208 (846)
.+...+...|++++|...|+.+.... +.++.++..++.++...|++++|...++.+.+.. +.+...+......+...
T Consensus 198 ~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 274 (899)
T TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALR--PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQK 274 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHh
Confidence 34445555666666666666665543 4455566666666666666666666666665532 12222222333334444
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHH
Q 003122 209 GQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYF 288 (846)
Q Consensus 209 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 288 (846)
|++++|+..|+.+.+.+.. +...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|...+
T Consensus 275 ~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATL 352 (899)
T ss_pred cCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555554443311 122222333344444555555555554444321 13333444444445555555555555
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHH------------------------
Q 003122 289 ELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSII------------------------ 344 (846)
Q Consensus 289 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li------------------------ 344 (846)
+.+.... +.+...+..+...+.+.|++++|.++|+++.+..+. +...+..+.
T Consensus 353 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 353 SPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE---NAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 5544432 223444444555555555555555555554443322 333344444
Q ss_pred ----------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 003122 345 ----------HLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLL 414 (846)
Q Consensus 345 ----------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 414 (846)
..+.+.|++++|..+++.+... .+.+..++..+...+...|++++|...|+++.+.. +.+...+..++
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 506 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLA 506 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Confidence 4444455555555555554443 12344455556666666666666666666655432 22344455556
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 415 NAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKV 494 (846)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 494 (846)
..+...|++++|.+.++++.... +.+..++..+...+...|+.++|..+++++.+.+ +.+...+..++..+...|+.+
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 66666666666666666665543 3345556666666666666666666666665543 334455556666666667777
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003122 495 NIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMM 574 (846)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 574 (846)
+|..++..+.... +.+...|..++..+...|++++|+..|+.+.+.. +.+...+..++..+...|++++|...++++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7766666665542 3455666777777777777777777777766543 3345556666666777777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003122 575 DLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIA 654 (846)
Q Consensus 575 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 654 (846)
+.. +.+..++..++..+...|++++|..+++.+...+ +.+...+..++..+...|++++|.+.|+++... .|+..+
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 738 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQN 738 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchH
Confidence 643 4456666777777777777777777777776653 345666667777777777777777777777763 455556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
+..++.++.+.|++++|.+.++++++..+. +...+..++.+|...|++++|+..++++....|. ++.+++.++.++..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 666777777777777777777777766544 5666777777777777777777777777766665 56677777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 003122 735 SGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAI 813 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 813 (846)
.|+ ++|+.+++++++ ..|+ ...+..++.+|...|++++|.++++++++.+.. ++.++..++..+...|+.++|.+
T Consensus 817 ~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 817 LKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred cCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 777 677777777777 6663 446667777777777777787777777775432 56677777777777777777777
Q ss_pred HHHHHH
Q 003122 814 IQERIE 819 (846)
Q Consensus 814 ~~~~l~ 819 (846)
+++++.
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 776653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=398.73 Aligned_cols=673 Identities=13% Similarity=0.056 Sum_probs=435.6
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003122 126 NFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAH 205 (846)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 205 (846)
.+..+...+...|++++|..+++.+.... +.+...+..+..++...|++++|...|+.+.+.. +.+..++..++..+
T Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~ 237 (899)
T TIGR02917 161 AKLGLAQLALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATIL 237 (899)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 35556677778888888888888887654 5667788888888888888888888888887643 45677788888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHH
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKAL 285 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 285 (846)
...|++++|...++.+.+.... +...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|.
T Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~ 315 (899)
T TIGR02917 238 IEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAY 315 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888876433 3344444555666788888888888888876432 2334445566778889999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 286 SYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLA 365 (846)
Q Consensus 286 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (846)
..|+.+.+.. +.+...+..+...+.+.|++++|...++.+....+. +...+..+...+.+.|++++|..+|+++.+
T Consensus 316 ~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 391 (899)
T TIGR02917 316 QYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD---DPAALSLLGEAYLALGDFEKAAEYLAKATE 391 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999988764 345677888889999999999999999999876554 778889999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHH
Q 003122 366 EGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSY 445 (846)
Q Consensus 366 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 445 (846)
.. +.+...+..+...+...|++++|...++++.+.... .......++..|.+.|++++|..+++.+.... +.+..+|
T Consensus 392 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 468 (899)
T TIGR02917 392 LD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLH 468 (899)
T ss_pred cC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHH
Confidence 63 234556777777777788888887777777654321 22233344455555555555555555554432 3344455
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---------------------------------CCCCHHHHHHHHHHHHhcCC
Q 003122 446 SALIDAYGSNGLLAEAVEVFREMEQDG---------------------------------IEPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~~~~~g---------------------------------~~~~~~~~~~ll~~~~~~g~ 492 (846)
..++..+...|++++|.+.|+++.+.. .+.+..++..+...+.+.|+
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 548 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN 548 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC
Confidence 555555555555555555555554432 12233344444444444444
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 493 KVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
.++|...+..+...+ +.+...+..++..|...|++++|..+++.+.+.. +.+...|..++.++...|++++|...+++
T Consensus 549 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 549 EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444444332 2233444455555555555555555555555432 33445555555556666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS 652 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 652 (846)
+.+.. +.+...+..++.++...|++++|...|+++.... +.+..++..++..+...|++++|.++++.+.+.+ +.+.
T Consensus 627 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 703 (899)
T TIGR02917 627 LLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA 703 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh
Confidence 55542 3344555555566666666666666666655532 2235555666666666666666666666665542 3345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..++..+.+.|++++|+..|+++.+.++. ...+..++.++...|++++|++.++++....|. +..++..++..|
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 55666666666667777777777766665433 355556666667777777777777766666665 556667777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCcch
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQTRGGAEY 810 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~ 810 (846)
...|++++|.+.|+++++ ..| +..++..++..|...|+ .+|+.+++++.+. .| ++..+..++..+...|++++
T Consensus 781 ~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776 556 44566677777777777 6677777777653 33 34455566666777777777
Q ss_pred HHHHHHHHHHHhh
Q 003122 811 AAIIQERIESLRM 823 (846)
Q Consensus 811 a~~~~~~l~~l~~ 823 (846)
|..+++++.++.+
T Consensus 856 A~~~~~~a~~~~~ 868 (899)
T TIGR02917 856 ALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhhCC
Confidence 7777777766543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=314.12 Aligned_cols=638 Identities=11% Similarity=0.049 Sum_probs=474.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH----------
Q 003122 129 FLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETY---------- 198 (846)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------- 198 (846)
.-++.....++.+.|.+.++.+.... |.++.++..++.++.+.|+.++|...+++..+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 34566667789999999999988765 6788899999999999999999999999998854 443222
Q ss_pred -------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 003122 199 -------NALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIV 271 (846)
Q Consensus 199 -------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 271 (846)
..+...+.+.|++++|++.|+.+.+.+.+........+.......|+.++|++.++++.+..+. +...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3345578889999999999999987643322222212222233468999999999999887533 66677888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChH---H-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 272 LSAYKNGAQYSKALSYFELMKGTNIRPDTT---T-----------------HNIVIYCLVKLGQYDKAIDLFHSMREKRS 331 (846)
Q Consensus 272 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~-----------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 331 (846)
...+...|++++|++.++++...... +.. . +...+..+-.....+.|...+.++.....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 88899999999999999998754210 111 0 11111111112234455555555443222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhH
Q 003122 332 ECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCP-DIVSY 410 (846)
Q Consensus 332 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~ 410 (846)
+ |+.. .......+...|++++|+..|++.++.. +.+...+..+...|.+.|++++|+..|++..+..... ....+
T Consensus 267 d--p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 267 D--PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred C--cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 2 2222 2234567788999999999999999863 3367788899999999999999999999988753221 11111
Q ss_pred ------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 411 ------------TSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIV 478 (846)
Q Consensus 411 ------------~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 478 (846)
..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|++.|+++++.. +.+..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 223456788999999999999998874 4566778888999999999999999999999853 33455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003122 479 SICTLLAACGRCGRKVNIDAVLLAAEMRDI--------KLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTY 550 (846)
Q Consensus 479 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 550 (846)
.+..+...+. .++.++|...+..+..... ......+..+...+...|++++|++.|++.++.. +-+...+
T Consensus 421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~ 498 (1157)
T PRK11447 421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLT 498 (1157)
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 6666666664 4577888888765432210 0112345667788889999999999999999874 3356677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------HHH
Q 003122 551 TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVI---------TYT 621 (846)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~ 621 (846)
..+...|.+.|++++|...++++++.. +.+...+..+...+...++.++|+..++.+......++.. .+.
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHH
Confidence 888999999999999999999998764 5566666667777788999999999998875432222221 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
.+...+...|+.++|+.+++. .+.+...+..+...+.+.|++++|+..|+++++..+. +...+..++.++...|
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 456778899999999999872 3455667788999999999999999999999998766 7888999999999999
Q ss_pred CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHH
Q 003122 702 DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-------FNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~ 774 (846)
++++|++.++.+....|. +..++..++.++...|++++|.+++++++. ..|+ ...+..++..+.+.|+++
T Consensus 652 ~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 652 DLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIP--QAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred CHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhh--hCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 999999999999877776 677888899999999999999999999998 4432 236677788999999999
Q ss_pred HHHHHHHHHHH-CCCCC
Q 003122 775 KYIEVLQWMED-AGIQP 790 (846)
Q Consensus 775 ~A~~~~~~~~~-~g~~p 790 (846)
+|+..|++++. .|+.|
T Consensus 729 ~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 729 QALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHHhhcCCCC
Confidence 99999999864 34554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-29 Score=304.16 Aligned_cols=639 Identities=13% Similarity=0.085 Sum_probs=482.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---------
Q 003122 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTY--------- 233 (846)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--------- 233 (846)
.-..++.....++.+.|.+.+.++.... +.|+..+..++..+.+.|+.++|.+.++++.+..+. +....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 4456677888999999999999998743 345888889999999999999999999999987532 32222
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHH
Q 003122 234 -------NNLINACGSTGNWREALKVCKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNI 305 (846)
Q Consensus 234 -------~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 305 (846)
..+...+...|++++|++.|+++...+. |+.. ....+.......|+.++|++.|+++.+.. +.+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3334568899999999999999987643 2322 22222222345699999999999999874 446778889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003122 306 VIYCLVKLGQYDKAIDLFHSMREKRSECL--------------P---DIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGL 368 (846)
Q Consensus 306 li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 368 (846)
+...+...|+.++|+..++++........ + ....+...+..+-.....+.|...+.++.....
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999875322100 0 001111112222222334556666666544432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-CHHHH--
Q 003122 369 KPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKP-NLVSY-- 445 (846)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~-- 445 (846)
.|+... ......+...|++++|+..|++.++.. +.+...+..|...|.+.|++++|+..|++..+..... +...|
T Consensus 267 dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 267 DPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred CcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 333322 234567788999999999999998853 2367889999999999999999999999998764221 11112
Q ss_pred ----------HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHH
Q 003122 446 ----------SALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAY 515 (846)
Q Consensus 446 ----------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 515 (846)
......+.+.|++++|+..|+++++.. +.+...+..+...+...|+.++|...|+.+.... +.+..++
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 123456788999999999999999864 4456777888999999999999999999999764 3456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCC--------CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 516 NSAIGSYMNVGEYEKAIALYKCMKKRKVM--------PDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS 587 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 587 (846)
..+...|. .++.++|+.+++.+...... -....+..+...+...|++++|++.++++++.. |.+...+..
T Consensus 423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~ 500 (1157)
T PRK11447 423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYR 500 (1157)
T ss_pred HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 77777774 56789999988776432100 011234556777889999999999999999875 557788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHH
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI---------ACSAL 658 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---------~~~~l 658 (846)
++..|.+.|++++|...++++.+.. +.+...+..+...+...+++++|+..++++......++.. .+..+
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 9999999999999999999998753 3346666666667788999999999998865422222211 23345
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 738 (846)
...+...|+.++|+.+++. .+ .+...+..++..+...|++++|+..++++....|. ++.++..++.+|...|++
T Consensus 580 a~~l~~~G~~~eA~~~l~~----~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ----QP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh----CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCH
Confidence 6778899999999999872 23 36677888999999999999999999999998888 788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCCcchHH
Q 003122 739 ESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-----YGMFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~ 812 (846)
++|++.++++++ ..|+ ...+..++.++.+.|++++|.+++++++...-... ...+..++.++...|+.++|.
T Consensus 654 ~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 654 AAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred HHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998 8885 55788889999999999999999999987432111 135677788899999999999
Q ss_pred HHHHHHHH
Q 003122 813 IIQERIES 820 (846)
Q Consensus 813 ~~~~~l~~ 820 (846)
..|++...
T Consensus 732 ~~y~~Al~ 739 (1157)
T PRK11447 732 ETYKDAMV 739 (1157)
T ss_pred HHHHHHHh
Confidence 99998854
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-27 Score=270.38 Aligned_cols=618 Identities=11% Similarity=0.025 Sum_probs=413.8
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 003122 132 KEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQW 211 (846)
Q Consensus 132 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 211 (846)
..+...|++++|+..|+.+.+.. |.++.++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ +++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~ 124 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVE 124 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccC
Confidence 33445599999999999999876 667889999999999999999999999999985 46555555544333 899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH-HHHHHcCCCHH
Q 003122 212 RWAMNIFDDMLRAAVAPSRSTYNNLINA--------CGSTGNWREALKVCKKMTENGVGPDLVTHNIV-LSAYKNGAQYS 282 (846)
Q Consensus 212 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~g~~~ 282 (846)
++|..+|+++.+..+ -+..++..+... |.+. +.|.+.++ .......|+..+.... ...|...++++
T Consensus 125 ~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 125 VKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred hhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 999999999998753 355666666655 5554 55555555 4333344445544444 89999999999
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 283 KALSYFELMKGTNIRPDTTTHNIVIYCLVK-LGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFN 361 (846)
Q Consensus 283 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (846)
+|+.++.++.+.+. .+......|..+|.. .++ +++..+++...+ .|...+..++..|.+.|+.++|..+++
T Consensus 200 ~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk------~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 200 QADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIF------TDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc------cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999863 355667777788888 477 888888654222 478899999999999999999999999
Q ss_pred HHHHcCCC-CCHHHHHHH------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 003122 362 TMLAEGLK-PNIVSYNAL------------------------------MAAYASHGMSKEALSVFNEIKKNGLCPDIVSY 410 (846)
Q Consensus 362 ~m~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 410 (846)
++...... |...+|..+ +..+.+.+.++.++++. .+.|....
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~- 344 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM- 344 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH-
Confidence 97654222 333333222 33344444444333331 12233222
Q ss_pred HHHHHHH--HhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHH
Q 003122 411 TSLLNAY--GRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQD-G-IEPNIVSICTLLAA 486 (846)
Q Consensus 411 ~~ll~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g-~~~~~~~~~~ll~~ 486 (846)
..++.+ ...+...++...+..|.... +-+....-.+.-...+.|+.++|..+|+..... + ...+......++..
T Consensus 345 -~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 345 -LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred -HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 122222 23355666666666666542 235555555555567788888888888888762 1 12334445567777
Q ss_pred HHhcCCH---HHHHHH----------------------H---HHHHhCCCcc--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 487 CGRCGRK---VNIDAV----------------------L---LAAEMRDIKL--NTVAYNSAIGSYMNVGEYEKAIALYK 536 (846)
Q Consensus 487 ~~~~g~~---~~a~~~----------------------~---~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 536 (846)
|.+.+.. .++..+ . ...... .+. +...|..+..++.. ++.++|+..|.
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 7666552 222221 1 111111 123 56667777776665 67777877777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003122 537 CMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD 616 (846)
Q Consensus 537 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 616 (846)
+.... .|+......+...+...|++++|...++++... +|+...+..++.++.+.|++++|...+++.++.+ +.+
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 66655 355444334444456778888888888776553 3444555666777777888888888887777653 222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
...+..+...+...|++++|...+++.++ ..|+...+..+..++.+.|++++|+..++++++..|. +...+..++.+
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~a 652 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 33333444444455888888888888877 4567777777777788888888888888888877665 66677777777
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRK 775 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 775 (846)
+...|++++|+..++++....|. ++.++..++.++...|++++|+..|+++++ +.|+. .+....+....+..+++.
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHH
Confidence 88888888888888887777776 667777888888888888888888888887 77755 366666777777777777
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 003122 776 YIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 776 A~~~~~~~~~~g~~p~~~ 793 (846)
|.+.+++... +.|+..
T Consensus 730 a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 730 LHEEVGRRWT--FSFDSS 745 (987)
T ss_pred HHHHHHHHhh--cCccch
Confidence 7777777665 444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-25 Score=256.52 Aligned_cols=615 Identities=12% Similarity=-0.029 Sum_probs=453.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 168 RLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWR 247 (846)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 247 (846)
..+...|++++|+..|+...+.. +-+..++..|...|.+.|++++|+..+++..+.. |+...|..++..+ ++++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~ 125 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEV 125 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccCh
Confidence 33445599999999999999854 3447888999999999999999999999999874 4434344433323 8999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHH--------HHcCCCHHHHHHHHHHHHhCCCCCChHHHHHH-HHHHHhcCCHHH
Q 003122 248 EALKVCKKMTENGVGPDLVTHNIVLSA--------YKNGAQYSKALSYFELMKGTNIRPDTTTHNIV-IYCLVKLGQYDK 318 (846)
Q Consensus 248 ~A~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 318 (846)
+|..+++++....+. +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++
T Consensus 126 kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 999999999987543 45555555554 5555 55555555 4433334455555555 899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 319 AIDLFHSMREKRSECLPDIVTFTSIIHLYSV-NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNE 397 (846)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (846)
|++++.++.+.++. +......|..+|.+ .++ +++..+++.. ++-+...+..++..|.+.|+.++|..++++
T Consensus 201 Ai~lL~~L~k~~pl---~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 201 ADTLYNEARQQNTL---SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHhcCCC---CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999987665 66667778888888 477 8888886642 335788899999999999999999999998
Q ss_pred HHHCCCC-CCHhhH------------------------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH
Q 003122 398 IKKNGLC-PDIVSY------------------------------TSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYS 446 (846)
Q Consensus 398 m~~~g~~-p~~~~~------------------------------~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 446 (846)
+...-.. |+..++ ..++..+.+.++++-+.++.. +.|....
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-- 344 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM-- 344 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--
Confidence 7643211 222222 122455566666665554422 2333332
Q ss_pred HHHHHH--HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCccCHHHHHHHHHHH
Q 003122 447 ALIDAY--GSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR--DIKLNTVAYNSAIGSY 522 (846)
Q Consensus 447 ~li~~~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~ 522 (846)
..+... ...+...++...++.|.+.. +-+......+.-...+.|+.++|..++...... +...+......++..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 122222 23467778888888887752 335566666666677899999999999988763 1233455666788888
Q ss_pred HhcCC---HHHHHHH-------------------------HHHHhhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 523 MNVGE---YEKAIAL-------------------------YKCMKKRKVMP--DSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 523 ~~~g~---~~~A~~~-------------------------~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
.+.+. ..++..+ +...... .++ +...|..+..++.. ++.++|+..+.+
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 77765 3333333 2222221 133 56677778777766 899999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD- 651 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~- 651 (846)
..... |+......++.++...|++++|...|+++... +|+...+..++..+.+.|+.++|...+++.++. .|+
T Consensus 502 Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~ 575 (987)
T PRK09782 502 AEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGD 575 (987)
T ss_pred HHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcc
Confidence 88753 55555555566667999999999999998764 455666778888899999999999999999985 344
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
...+..+...+...|++++|+..++++++..+ +...+..++.++.+.|++++|+..++++....|. +..+++.++.+
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~a 652 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 33444444555667999999999999998665 5788899999999999999999999999999998 77899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCcc
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY-GMFRDIVSFAQTRGGAE 809 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~ 809 (846)
+...|+.++|+..++++++ +.| +...+..++.+|...|++++|+..++++.+ +.|+. .+....+........+.
T Consensus 653 L~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHH
Confidence 9999999999999999999 999 466999999999999999999999999987 56765 35556677777777777
Q ss_pred hHHHHHHHHHHHhhcc
Q 003122 810 YAAIIQERIESLRMKS 825 (846)
Q Consensus 810 ~a~~~~~~l~~l~~~~ 825 (846)
.+.+.+++.-.+....
T Consensus 729 ~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 729 RLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHHHhhcCccc
Confidence 7777777776665543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-27 Score=238.88 Aligned_cols=379 Identities=16% Similarity=0.138 Sum_probs=265.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 003122 408 VSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSIC-TLLAA 486 (846)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~ll~~ 486 (846)
.+|..+.+.+-..|++++|+..++.+++.. +.....|..+..++...|+.+.|...|.+.++. .|+..... .+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 444445555555555555555555554442 223344555555555555555555555555542 34333222 22222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHhH
Q 003122 487 CGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD-SVTYTVLISSCCRLSRYSE 565 (846)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 565 (846)
+...|++.+|...+.++++.. +.-.++|+.|...+...|+...|+..|++..+. .|+ ...|..|...|-..+.+++
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 333455555555555554442 224566788888888888888888888888876 343 4567788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 566 ALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEME 644 (846)
Q Consensus 566 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (846)
|...|..+.... |...+++..+...|..+|+++-|+..|++.++. .|+ ...|+.|..++-..|+..+|...|.+.+
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 888888887753 455677777888888888888888888888874 577 6788888888888888888888888888
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchh
Q 003122 645 TNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIG 723 (846)
Q Consensus 645 ~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 723 (846)
. +.|+ ..+.+.|...|...|..++|..+|+++.+..+. -...++.++.+|..+|++++|+..|+.+....|. -..
T Consensus 348 ~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAd 423 (966)
T KOG4626|consen 348 R--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FAD 423 (966)
T ss_pred H--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHH
Confidence 7 4454 557788888888888888888888888886555 4566778888888888888888888888888877 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSF 801 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~ 801 (846)
+|++++..|...|+.+.|++.+.+++. ++|... ++..|+.+|...|+..+|+..|+.+++ ++||.. .+-+++..
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 888888888888888888888888888 888544 888888888888888888888888876 677744 44455444
Q ss_pred HH
Q 003122 802 AQ 803 (846)
Q Consensus 802 ~~ 803 (846)
+.
T Consensus 500 lq 501 (966)
T KOG4626|consen 500 LQ 501 (966)
T ss_pred HH
Confidence 33
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-23 Score=223.95 Aligned_cols=649 Identities=14% Similarity=0.076 Sum_probs=468.5
Q ss_pred CCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCCh-----HHHHHHHHHHHH-----------cCCHHHHHHHHHHH
Q 003122 124 RKNFPFLIKEITQRGAINHSNQVFNWMKNQKNY-CARN-----DIYNMMIRLHAR-----------HNQIDKARGLFFEM 186 (846)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~-----~~~~~li~~~~~-----------~g~~~~A~~~~~~~ 186 (846)
.+.+..+..+|.+.|..++.+.+.+...-..+. -.+. .+++.+...+.. ...+..|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 345677888999999999999999876621110 0011 123333333322 12234455555544
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC
Q 003122 187 QKWRCKPDAETYNALISAHGRAGQ--WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENG--VG 262 (846)
Q Consensus 187 ~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g--~~ 262 (846)
-......+. ++..-...|...|. ++.|...|...++.. ++|...+-.=.......|++..|+.+|....... ..
T Consensus 121 ~ki~m~~~~-~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 121 DKIDMYEDS-HLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HHhhccCcc-hhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 331111111 11111112223333 589999999988864 3344444333334446679999999999977543 34
Q ss_pred CChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCCCHHH
Q 003122 263 PDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKL---GQYDKAIDLFHSMREKRSECLPDIVT 339 (846)
Q Consensus 263 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 339 (846)
||+.. .+...+.+.++.+.|+..|....+.+. .++.++-.|...-... ..+..+..++...-...+. |+++
T Consensus 199 aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~---nP~~ 272 (1018)
T KOG2002|consen 199 ADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE---NPVA 272 (1018)
T ss_pred CCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC---CcHH
Confidence 45432 233556789999999999999998742 2333333333332332 3456778888777766554 7889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHH
Q 003122 340 FTSIIHLYSVNGQIENCKGVFNTMLAEGLK--PNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDI--VSYTSLLN 415 (846)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~ 415 (846)
.+.|...|.-.|+++.+..+...+...... .-...|-.+..+|-..|++++|...|.+..+. .+|. ..+.-|..
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhH
Confidence 999999999999999999999998875311 11235888999999999999999999888764 3444 44566889
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 416 AYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNG----LLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCG 491 (846)
Q Consensus 416 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 491 (846)
+|.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+..+.- +.|...|..+...+....
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC
Confidence 9999999999999999998763 556778888888887765 5678888888887753 566777777777766544
Q ss_pred CHHHHHHHHHHH----HhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCH------HHHHHHHHHHH
Q 003122 492 RKVNIDAVLLAA----EMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR---KVMPDS------VTYTVLISSCC 558 (846)
Q Consensus 492 ~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~------~~~~~li~~~~ 558 (846)
-+ .+..++..+ ...+..+.+...|.+...+...|++++|...|...... ...+|. .+-..+...+-
T Consensus 429 ~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 429 PW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred hH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 33 335555443 34455678899999999999999999999999988764 112232 23344566667
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
..++.+.|.+.|..+++.. |.-...|..++.+....++..+|...++...... ..++..+..++..+.....|..|.+
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccccc
Confidence 7889999999999999863 5556677777755556788999999999998853 5567888889999999999999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 639 LFLEMETNN-IEPDSIACSALMRAFNK------------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 639 ~~~~~~~~g-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
-|+...+.- ..+|..+..+|++.|.+ .+..++|+++|.++++.+|. +...-+.++.+++..|++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchH
Confidence 888877632 34688888888886653 34568899999999998776 77777889999999999999
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
|+.+|.+..+.... ...+|.+++++|..+|++..|+++|+.++++-..- +..+...|+.++++.|.|.+|.+.+..+.
T Consensus 665 A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 665 ARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999998766553 45689999999999999999999999999864333 56688899999999999999999998887
Q ss_pred HCCCCCC
Q 003122 785 DAGIQPS 791 (846)
Q Consensus 785 ~~g~~p~ 791 (846)
. ..|+
T Consensus 744 ~--~~p~ 748 (1018)
T KOG2002|consen 744 H--LAPS 748 (1018)
T ss_pred H--hCCc
Confidence 6 4554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=233.92 Aligned_cols=388 Identities=16% Similarity=0.173 Sum_probs=286.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH-HHHHHH
Q 003122 374 SYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYS-ALIDAY 452 (846)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~ 452 (846)
+|..+...+-..|++++|+.+++.+.+... .....|..+..++...|+.+.|...|.+..+. .|+..... .+...+
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 455555555555555555555555544311 12344555555555555555555555444433 23333222 222233
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHH
Q 003122 453 GSNGLLAEAVEVFREMEQDGIEPN-IVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKA 531 (846)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 531 (846)
-..|++.+|...|.++++. .|. ...|+.|.-.+-..|+...|...|.++...+ +.-..+|-.|...|...+.++.|
T Consensus 195 ka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHH
Confidence 3345555555555555543 222 2344444445555555555555555554442 22456788889999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003122 532 IALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS 611 (846)
Q Consensus 532 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (846)
+..|....... +...+.+..+...|..+|.++.|+..|++.++.. |.-...|+.|..++-..|++.+|...|.+.+..
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99999887762 3356778888888999999999999999999864 556789999999999999999999999999985
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 003122 612 GCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSI 689 (846)
Q Consensus 612 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 689 (846)
.|+ ....+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|+.++|+..|+++++..+. -...
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda 424 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADA 424 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHH
Confidence 455 78999999999999999999999999998 6777 668999999999999999999999999985544 4578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~ 768 (846)
+..++..|-..|+...|++.+.++...+|. -..++++|+..|...|++.+|++.|+.+++ +.||.. +|-.++.++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 899999999999999999999999999998 678999999999999999999999999999 999865 8888988877
Q ss_pred hcCCHHHHH
Q 003122 769 AAGNWRKYI 777 (846)
Q Consensus 769 ~~g~~~~A~ 777 (846)
-...|.+--
T Consensus 502 ~vcdw~D~d 510 (966)
T KOG4626|consen 502 IVCDWTDYD 510 (966)
T ss_pred HHhcccchH
Confidence 666665533
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-21 Score=205.43 Aligned_cols=645 Identities=12% Similarity=0.041 Sum_probs=463.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhC------CCCCC-HHHHHHHHHHHHhc-----------CChHHHHHHHHHH
Q 003122 160 NDIYNMMIRLHARHNQIDKARGLFFEMQKW------RCKPD-AETYNALISAHGRA-----------GQWRWAMNIFDDM 221 (846)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~-~~~~~~li~~~~~~-----------g~~~~A~~~~~~~ 221 (846)
-++|..+...|.+.|..++.+.+++..... +...+ ...++.|...+... ..+..|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 368999999999999999999999887621 11111 11222233333222 2234455555544
Q ss_pred HHcCCCCCH-HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CC
Q 003122 222 LRAAVAPSR-STYNNLINACGSTGN--WREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGT--NI 296 (846)
Q Consensus 222 ~~~g~~~~~-~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~ 296 (846)
-+.....+. .++.. ..|...|. ++.|.+.|........ +|+...-.-.......+++..|+.+|...... ..
T Consensus 121 ~ki~m~~~~~l~~~~--~~~l~~~~~~~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQR--GFLLLEGDKSMDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHhhccCcchhhhhh--hhhhhcCCccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 332211111 11111 11223333 6899999999887643 35555444445556779999999999997644 33
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHH
Q 003122 297 RPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVN---GQIENCKGVFNTMLAEGLKPNIV 373 (846)
Q Consensus 297 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~ 373 (846)
.||+. -.+..++.+.|+.+.|+..|.++++.+|. ++.++..|...-... ..+..+..++....... .-|++
T Consensus 198 ~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~---~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~ 271 (1018)
T KOG2002|consen 198 KADVR--IGIGHCFWKLGMSEKALLAFERALQLDPT---CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPV 271 (1018)
T ss_pred CCCcc--chhhhHHHhccchhhHHHHHHHHHhcChh---hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcH
Confidence 44443 34457788999999999999999987764 555555555444433 34566777777766553 44677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH--HHHHHHH
Q 003122 374 SYNALMAAYASHGMSKEALSVFNEIKKNGLCP--DIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNL--VSYSALI 449 (846)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li 449 (846)
..+.|...|.-.|+++.+..+...+......- -...|..+.++|-..|++++|...|.+.... .++. ..+--+.
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLG 349 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchh
Confidence 88899999999999999999999988753221 1345888999999999999999999887765 3333 3455678
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 003122 450 DAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCG----RKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNV 525 (846)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 525 (846)
..|...|+++.+...|+...+.. +.+..+...|...|...+ ..+.|..++....... +.|...|-.+...+.+.
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 89999999999999999999863 455667777777776664 5677777777777664 55788888888887655
Q ss_pred CCHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCCCC------HHHHHHHHHHH
Q 003122 526 GEYEKAIALYKCMK----KRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL---KIPLT------NQVYSSVISAY 592 (846)
Q Consensus 526 g~~~~A~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~------~~~~~~l~~~~ 592 (846)
.-+. ++..|.... ..+..+.....+.+.......|.+.+|...|..+... ...++ ..+-..+...+
T Consensus 428 d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 4443 376665543 3455577788999999999999999999999998754 11222 23445567778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003122 593 SKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 671 (846)
...++.+.|.+.|..+++. -|. +..|--++......++..+|...+...... ...++.++..++..+.+...+..|
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhccc
Confidence 8889999999999999985 355 566666665555678899999999999874 345667788888889888889889
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 003122 672 LLVAEFMREQ-DITFSDSIFFEMVLACSL------------LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 672 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 738 (846)
.+-|+...+. ...+|..+...++..+.. .+..++|+++|.++...+|. ++.+-|.++-+++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCc
Confidence 8877777652 223466777777776553 34678999999999999998 778889999999999999
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCcchHHHHHHH
Q 003122 739 ESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PSYGMFRDIVSFAQTRGGAEYAAIIQER 817 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 817 (846)
.+|..+|.++.+.+ .-+..+|..++++|..+|+|..|+++|+.....-.+ .+..+..-|+..+...+...++.+...+
T Consensus 663 ~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 663 SEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred hHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999832 224568999999999999999999999997765443 3566777788888888888877777766
Q ss_pred HHHHhh
Q 003122 818 IESLRM 823 (846)
Q Consensus 818 l~~l~~ 823 (846)
...+..
T Consensus 742 a~~~~p 747 (1018)
T KOG2002|consen 742 ARHLAP 747 (1018)
T ss_pred HHHhCC
Confidence 655443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-20 Score=213.02 Aligned_cols=430 Identities=13% Similarity=0.044 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 301 TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMA 380 (846)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 380 (846)
..+......+.+.|++++|+..|++.+... |+...|..+..+|.+.|++++|+..++..++.. +.+...|..+..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~----p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~ 202 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECK----PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 345566667777777777777777776533 455666677777777777777777777776652 223446666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHH
Q 003122 381 AYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAE 460 (846)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (846)
+|...|++++|+..|......+-..+. ....++..+.. ..+........+.. +.+...+..+.. |........
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCc
Confidence 777777777777666555432111111 11111111111 11111111111111 111111111111 111000000
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHHHHHHHHH---HHhcCCHHHHHHHHH
Q 003122 461 AVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLN-TVAYNSAIGS---YMNVGEYEKAIALYK 536 (846)
Q Consensus 461 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~ 536 (846)
+..-+.+ .... .+. ...+..+... ....+.+++|++.|+
T Consensus 276 ~~~~~~~-----------------------------------~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 276 RPAGLED-----------------------------------SNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFE 318 (615)
T ss_pred chhhhhc-----------------------------------cccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0000000 0000 000 0001111111 123467889999998
Q ss_pred HHhhCC-CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003122 537 CMKKRK-VMP-DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCS 614 (846)
Q Consensus 537 ~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (846)
...+.+ ..| +...+..+...+...|++++|+..++++++.. |.....|..++.++...|++++|+..|+++++.. +
T Consensus 319 ~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p 396 (615)
T TIGR00990 319 KALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-S 396 (615)
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 888754 123 44567777888888999999999999988864 4456688888888999999999999999988753 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 615 PDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEM 693 (846)
Q Consensus 615 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 693 (846)
.+...|..++..+...|++++|+..|++.++ +.|+ ...+..++.++.+.|++++|+..|+++++..+. +...+..+
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~l 473 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYY 473 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 3478888899999999999999999999988 4454 667778888899999999999999999886654 67788888
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccch------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHH
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSI------GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKN 766 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 766 (846)
+.++...|++++|+..++++....|.... ..++..+..+...|++++|.++++++++ +.|+. .++..++.+
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~ 551 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQL 551 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 99999999999999999988766654221 1122222334446999999999999999 88854 478889999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 003122 767 LLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~~ 786 (846)
|...|++++|+..|+++.+.
T Consensus 552 ~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 552 LLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999874
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-20 Score=208.64 Aligned_cols=256 Identities=12% Similarity=-0.000 Sum_probs=217.3
Q ss_pred hcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 003122 559 RLSRYSEALGFLDEMMDLK--IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEK 635 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 635 (846)
..+++++|...|+++++.+ .+.....+..++..+...|++++|+..|++.+.. .|+ ...|..++..+...|++++
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 3578999999999999864 2345567888899999999999999999999985 455 6789999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 636 ACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 636 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
|+..|+++++. .| +..+|..++..+...|++++|+..|+++++.++. +...+..++.++...|++++|+..++++.
T Consensus 384 A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 384 AEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999984 44 4778999999999999999999999999998765 67778889999999999999999999998
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHH------HHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 003122 715 PSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTY------SILLKN-LLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 715 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~------~~l~~~-~~~~g~~~~A~~~~~~~~~~ 786 (846)
...|. ++.+++.++.++...|++++|++.|+++++ +.|+. ..+ ...+.. +...|++++|+.+++++++.
T Consensus 461 ~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 461 KNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88887 778999999999999999999999999999 77742 111 112223 44479999999999999874
Q ss_pred CCCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 003122 787 GIQPSY-GMFRDIVSFAQTRGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 787 g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~ 824 (846)
.|+. ..+..++..+...|++++|...+++..++.+.
T Consensus 538 --~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 538 --DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred --CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 4554 46788899999999999999999999887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-16 Score=168.97 Aligned_cols=666 Identities=13% Similarity=0.073 Sum_probs=411.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003122 131 IKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ 210 (846)
Q Consensus 131 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 210 (846)
.+.+..+|++++|.+++..+.++. +..+..|.+|..+|-+.|+.+++...+--+--.. +.|..-|..+.....+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 455566799999999999999987 6788899999999999999999998876655432 5567899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH----HHHHHHcCCCHHHHHH
Q 003122 211 WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNI----VLSAYKNGAQYSKALS 286 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----ll~~~~~~g~~~~A~~ 286 (846)
++.|.-.|.+.++..+ ++...+---...|-+.|+...|..-|.++.....+.|..-+.. .+..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999753 3444444556788899999999999999998754333333333 3455677777799999
Q ss_pred HHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------------------CCCCHHHH
Q 003122 287 YFELMKGT-NIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSE-------------------------CLPDIVTF 340 (846)
Q Consensus 287 ~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------------------~~~~~~~~ 340 (846)
.++..... +-..+...+++++..+.+...++.|......+...... ..++...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 99988762 22335667899999999999999999988887652111 1111122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 003122 341 TSIIHLYSVNGQIENCKGVFNTMLAEGLK--PNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYG 418 (846)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (846)
--+.-++......+....+.......... -+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 01122233333344444444444444422 3345788888888888999999999888887654446678888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhc
Q 003122 419 RSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREME--------QDGIEPNIVSICTLLAACGRC 490 (846)
Q Consensus 419 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~ll~~~~~~ 490 (846)
..|.+++|.+.|+...... +.+...--.|...+.+.|+.++|.+.+..+. ..++.|+..........+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 8899999998888888763 3344555567777888889998888888854 223445555555555566666
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 003122 491 GRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFL 570 (846)
Q Consensus 491 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 570 (846)
|+.++-......++.. ......+. -+..++... .....+..-...+...++.+-.+.++.....+-.
T Consensus 540 gk~E~fi~t~~~Lv~~------~~~~~~~f-----~~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l 606 (895)
T KOG2076|consen 540 GKREEFINTASTLVDD------FLKKRYIF-----PRNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKAL 606 (895)
T ss_pred hhHHHHHHHHHHHHHH------HHHHHHhc-----chHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcc
Confidence 6666644444333321 00000000 000000000 0000001112222223333333333221111111
Q ss_pred HH------HHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHH
Q 003122 571 DE------MMDLKIPLTN--QVYSSVISAYSKQGLIAEAESMFNMMKMSGC-SPDV----ITYTAMLHAYNTAEDWEKAC 637 (846)
Q Consensus 571 ~~------~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~ 637 (846)
.. ....+...+. ..+.-++..+++.+++++|..+...+..... .-+. ..-...+.+.+..+++.+|.
T Consensus 607 ~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~ 686 (895)
T KOG2076|consen 607 SDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAF 686 (895)
T ss_pred cchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 11 1111221111 3455667778888888888888877766321 1121 12244455666778888888
Q ss_pred HHHHHHHHC-CC--CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003122 638 ALFLEMETN-NI--EPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQM 713 (846)
Q Consensus 638 ~~~~~~~~~-g~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (846)
..++.|+.. +. .|. ...|+...+.+.+.|+-.--..++..+......-+.......+......+.+.-|+..+-++
T Consensus 687 ~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra 766 (895)
T KOG2076|consen 687 SYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA 766 (895)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH
Confidence 888888763 11 122 33455555555565554444444544444333322333344455566778888888888877
Q ss_pred ccCCCc-cchhhHHHHHHHH--------HhcCCHHHHHHHHHHHHhcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 714 EPSFHV-VSIGLLNQLLHLL--------GKSGRIESMMKLFFKIVSSGAEA---NFNTYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 714 ~~~~~~-~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
....|. |.+.....+...- .++-.+-++...+.+..+ +.. -..+.++++++|...|-..-|+.+|+
T Consensus 767 ~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~--lR~~~~~QEa~YNigRayh~~gl~~LA~~YYe 844 (895)
T KOG2076|consen 767 FRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKE--LRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYE 844 (895)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 766665 2222222221111 123345566667766665 333 23478888999999999999999999
Q ss_pred HHHHCCCCC-------CHH----hHHHHHHHHHhcCCcchHHHHHHH
Q 003122 782 WMEDAGIQP-------SYG----MFRDIVSFAQTRGGAEYAAIIQER 817 (846)
Q Consensus 782 ~~~~~g~~p-------~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 817 (846)
++++....+ +.. ...++...|...|....|..|+++
T Consensus 845 kvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 845 KVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 988642111 111 345667778888888888887764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-19 Score=200.96 Aligned_cols=330 Identities=10% Similarity=-0.020 Sum_probs=166.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhC
Q 003122 376 NALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSN 455 (846)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 455 (846)
..++..+.+.|++++|..+++..+..... +...+..++......|++++|...++++.... +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34555666777777777777777765322 33445555566666777777777777777653 44556666677777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 456 GLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALY 535 (846)
Q Consensus 456 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 535 (846)
|++++|+..++++.+.. +.+...+..+...+...|+.++|...+..+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 77777777777777642 222334444444555555555555555444333211 12222222 1234445555555554
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003122 536 KCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSP 615 (846)
Q Consensus 536 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 615 (846)
+.+.+... .++...+..++.++...|++++|+..++++.... +.
T Consensus 201 ~~~l~~~~-----------------------------------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~ 244 (656)
T PRK15174 201 RALLPFFA-----------------------------------LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LD 244 (656)
T ss_pred HHHHhcCC-----------------------------------CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 44444321 1222223333344444455555555554444432 12
Q ss_pred CHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 003122 616 DVITYTAMLHAYNTAEDWEK----ACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIF 690 (846)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (846)
+...+..+...|...|++++ |...|+++.+ ..|+ ..++..++..+.+.|++++|+..++++++..+. +...+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~ 321 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVR 321 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 24444444444444454443 4455555544 2232 334444455555555555555555555544333 33344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
..++.++...|++++|+..++++....|. ....+..++.++...|+.++|...|+++++
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555555555555555554444443 222333344445555555555555555555
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-18 Score=200.64 Aligned_cols=435 Identities=13% Similarity=0.068 Sum_probs=240.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003122 299 DTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNAL 378 (846)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 378 (846)
+.....-.+......|+.++|++++.+.....+ .+...+..+...+...|++++|..+|++.++.. +.+...+..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~---~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ---LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 444444555566667777777777777654222 245556777777777777777777777776652 2334455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCH
Q 003122 379 MAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLL 458 (846)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 458 (846)
+..+...|++++|+..++++.+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 667777777777777777776642 22344 6666777777777777777777777653 33455555566666677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCH---HHHHHHH
Q 003122 459 AEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEY---EKAIALY 535 (846)
Q Consensus 459 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~ 535 (846)
++|++.++.+.. .|+.... +. ...+..... ..+.......+++ ++|++.+
T Consensus 167 e~Al~~l~~~~~---~p~~~~~---l~-------~~~~~~~~r--------------~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRD---LE-------ADAAAELVR--------------LSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHH---HH-------HHHHHHHHH--------------hhcccccChhHHHHHHHHHHHHH
Confidence 777777765543 2321000 00 000000000 0000001112223 5666666
Q ss_pred HHHhhC-CCCCCHH-HHH----HHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 536 KCMKKR-KVMPDSV-TYT----VLISSCCRLSRYSEALGFLDEMMDLKIP-LTNQVYSSVISAYSKQGLIAEAESMFNMM 608 (846)
Q Consensus 536 ~~~~~~-~~~p~~~-~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (846)
+.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 666643 1122211 111 1122334556666666666666655321 111 1222355666666666666666666
Q ss_pred HHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003122 609 KMSGCSP---DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI-ACSALMRAFNKGGQPSKVLLVAEFMREQDIT 684 (846)
Q Consensus 609 ~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (846)
....... ....+..+..++...|++++|..+++++.+. .|... .+. ... ..
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~---------------------~~~--~~ 353 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYG---------------------SPT--SI 353 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecC---------------------CCC--CC
Confidence 5432100 1233444555556666666666666666542 22110 000 000 01
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHH
Q 003122 685 FS---DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTY 760 (846)
Q Consensus 685 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~ 760 (846)
|+ ...+..++.++...|++++|++.++++....|. +..++..++.++...|+.++|++.++++++ +.|+ ...+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~ 430 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLE 430 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHH
Confidence 12 123445566666677777777777776666666 466777777777777777777777777777 7774 4466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 003122 761 SILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDI 798 (846)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 798 (846)
..++..+...|++++|..+++++++ ..|+......+
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 6666677777777777777777766 45555544444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-20 Score=200.32 Aligned_cols=276 Identities=14% Similarity=0.141 Sum_probs=208.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD---SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS 587 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 587 (846)
+..++..+...+...|++++|+..++.+...+..++ ...+..++..|...|++++|..+|+++.+.. +.+..++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 445566667777777777777777777766432221 2346667777778888888888888877653 456677778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPD----VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAF 662 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 662 (846)
++.++.+.|++++|.+.++.+.+.+..++ ...+..++..+.+.|++++|...|+++.+. .|+ ...+..++..+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 224 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHH
Confidence 88888888888888888888877542222 124556777778888888888888888873 343 55777788888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
.+.|++++|+++++++.+.++......+..++.+|...|++++|+..++++....|.. ..+..++..+.+.|++++|.
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--DLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHhCCHHHHH
Confidence 8888888888888888876554334567778888888899999998888887776653 34578999999999999999
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 743 KLFFKIVSSGAEANFNTYSILLKNLLA---AGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 743 ~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
..++++++ ..|+...+..++..+.. .|+.++|+.++++|.+.+++|++.
T Consensus 303 ~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 303 ALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999999 78998888877777554 568999999999999988888776
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-16 Score=157.36 Aligned_cols=612 Identities=13% Similarity=0.113 Sum_probs=441.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003122 139 AINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIF 218 (846)
Q Consensus 139 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 218 (846)
+..+|..+++.+++-+ |.++..|-+-.++--..|++..|+.+...--+ .|+.+...|.--| +..-.+.|..+.
T Consensus 266 DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe-~cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCE-ECPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHh-hCCchHHHHHHHH----hcCChHHHHHHH
Confidence 4455666666666544 44445555555555556666666665543322 1344445554332 233445555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 003122 219 DDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRP 298 (846)
Q Consensus 219 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 298 (846)
....+. ++.++..|.-.+. -..+...=.+++++.++. ++.++..|-. .......+.|..++....+. ++.
T Consensus 339 A~Avr~-~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~ 408 (913)
T KOG0495|consen 339 ANAVRF-LPTSVRLWLKAAD---LESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQ 408 (913)
T ss_pred HHHHHh-CCCChhhhhhHHh---hhhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccc
Confidence 555553 2223333322221 112233334566666654 2224444433 33445566688888877764 222
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHH
Q 003122 299 DTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTML----AEGLKPNIVS 374 (846)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~ 374 (846)
+. -|.-+|.+..-++.|..++++..+.-+. +...|.+-...--.+|+.+...+++.+.+ ..|+..+...
T Consensus 409 s~----dLwlAlarLetYenAkkvLNkaRe~ipt---d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 409 SM----DLWLALARLETYENAKKVLNKAREIIPT---DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred hH----HHHHHHHHHHHHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 22 2344566777888999999998876554 77788877777788888888888877654 3477888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 003122 375 YNALMAAYASHGMSKEALSVFNEIKKNGLCPD--IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAY 452 (846)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 452 (846)
|..=...+-..|..-.+..+....+.-|+.-. ..||..-...|.+.+.++-|..+|....+- ++.+...|...+..-
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~e 560 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHH
Confidence 88888888888888888888888887776532 467888888899999999999999888765 255667788777777
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 003122 453 GSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAI 532 (846)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 532 (846)
-..|..++-..+|+++... ++-....+......+-..|++..|..++..+.... +.+...|.+.+.....+.+++.|.
T Consensus 561 k~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHH
Confidence 7789999999999999886 33444556666677778899999999999888775 337788888888899999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003122 533 ALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSG 612 (846)
Q Consensus 533 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (846)
.+|.+.... .|+...|.--+...--.++.++|.+++++.++. ++.-...|..+++.+.+.++++.|...|..-.+.
T Consensus 639 ~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~- 714 (913)
T KOG0495|consen 639 DLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK- 714 (913)
T ss_pred HHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-
Confidence 999988875 567777776666666788999999999998885 4666778889999999999999999998877764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 613 CSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE 692 (846)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 692 (846)
|+..+..|-.|...--+.|+.-+|..++++..-.+ +-+...|...++.-.+.|+.+.|..+..++++.-+. +...|..
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaE 792 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAE 792 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHH
Confidence 44457788888888888899999999999988642 446778889999999999999999999999876544 6677777
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcC
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAG 771 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 771 (846)
-+....+.++--.+++.+++... ++.++..++..++...+++.|++-|.++++ ..||.. +|..+...+...|
T Consensus 793 aI~le~~~~rkTks~DALkkce~-----dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCEH-----DPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHhccCcccchHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhC
Confidence 77777777777777777777653 344667888899999999999999999999 889776 8888888899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 003122 772 NWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 772 ~~~~A~~~~~~~~~~g~~p~~ 792 (846)
.-++-.+++.+-.. ..|.-
T Consensus 866 ~eed~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 866 TEEDQKEVLKKCET--AEPTH 884 (913)
T ss_pred CHHHHHHHHHHHhc--cCCCC
Confidence 88888888887765 34543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-18 Score=199.18 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=123.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHH
Q 003122 629 TAEDWEKACALFLEMETNNIE-PDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF---SDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~ 704 (846)
..|++++|+..|+++.+.+-. |+. ....+..+|...|++++|+.+|+++++..+.. .......++.++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 445555555555555543211 211 11113444555555555555555554432211 1123333444455555555
Q ss_pred HHHHHHHhhccCCC-------------ccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHh
Q 003122 705 TTIDLIKQMEPSFH-------------VVS-IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLA 769 (846)
Q Consensus 705 ~A~~~~~~~~~~~~-------------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 769 (846)
+|+++++.+....| ..+ ..++..++..+...|++++|++.+++++. ..| +...+..++..+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 55555555544332 211 34567888999999999999999999999 889 55689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 003122 770 AGNWRKYIEVLQWMEDAGIQPSY-GMFRDIVSFAQTRGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 770 ~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~ 823 (846)
.|++++|+..++++++ +.|+. ......+....+.++.++|...++++.+..+
T Consensus 406 ~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 406 RGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred cCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999987 56764 4566667788889999999999988877543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-15 Score=155.79 Aligned_cols=611 Identities=12% Similarity=0.038 Sum_probs=468.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 173 HNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKV 252 (846)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 252 (846)
.+++.+|+.++....+.+ +.++..|.+-.+.=-..|++..|..+...=-+. ++.+..+|.-- ++....+.|..+
T Consensus 264 l~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHH
Confidence 456788888888888754 445667766666666677787777776554333 33455555433 355567777777
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 253 CKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSE 332 (846)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 332 (846)
.......-+ .++..| +.+---..+...=.+++++.++. ++.++..|... ....+.+.|.-++.+..+--+
T Consensus 338 vA~Avr~~P-~Sv~lW---~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAveccp- 407 (913)
T KOG0495|consen 338 VANAVRFLP-TSVRLW---LKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECCP- 407 (913)
T ss_pred HHHHHHhCC-CChhhh---hhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhcc-
Confidence 777766421 133333 33333334445556677777765 23344444333 345667779999998887433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHCCCCCCHh
Q 003122 333 CLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNE----IKKNGLCPDIV 408 (846)
Q Consensus 333 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~ 408 (846)
.+...|.+ |.+..-++.|..+++...+. ++.+...|.+-...--.+|..+...+++++ +..+|...+..
T Consensus 408 --~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 408 --QSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred --chHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 25555554 44556789999999998876 566778888877777888999888888766 44578888888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 409 SYTSLLNAYGRSQQPVKAREVFNMMRINNLKPN--LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAA 486 (846)
Q Consensus 409 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 486 (846)
-|..=...+-..|..-.+..+....+.-|+... ..+|+.-.+.|.+.+.++-|..+|..+++- ++-+...|..+...
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ 559 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMF 559 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHH
Confidence 888888888888999999888888887765433 468888899999999999999999999885 34455667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 003122 487 CGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEA 566 (846)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 566 (846)
--..|..+....+|+.+...- +.....|......+-..|+...|..++....+.. +.+...|..-+........++.|
T Consensus 560 ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHH
Confidence 677899999999999998873 4567778888888889999999999999998874 33667888888888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 567 LGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMET 645 (846)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (846)
..+|.+.... .++..+|.--+...--.++.++|++++++.++. -|+ ...|..++..+-+.++.+.|...|..-.+
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999998874 588888888788778889999999999999985 466 56788889999999999999999988776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhH
Q 003122 646 NNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLL 725 (846)
Q Consensus 646 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 725 (846)
. ++-....|..|...=.+.|+.-.|..++++..-.+|+ +...|...+..-.+.|+.++|..+..++.++.|. +-..|
T Consensus 714 ~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LW 790 (913)
T KOG0495|consen 714 K-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLW 790 (913)
T ss_pred c-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhH
Confidence 3 3334667888888888999999999999999998887 8888999999999999999999999999999888 66778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHh
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSFAQT 804 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 804 (846)
..-+.+..+.++-..+...+++ .+-|+.+....+..++...++++|.+.|.+++. +.||.+ ++.-...|...
T Consensus 791 aEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELR 863 (913)
T ss_pred HHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHH
Confidence 8888888788886666665554 455667777788889999999999999999987 456655 56667788899
Q ss_pred cCCcchHHHHHHHHHHHhh
Q 003122 805 RGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 805 ~~~~~~a~~~~~~l~~l~~ 823 (846)
.|..++-++++.+...-.+
T Consensus 864 hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred hCCHHHHHHHHHHHhccCC
Confidence 9999999999988876443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-20 Score=197.28 Aligned_cols=304 Identities=16% Similarity=0.132 Sum_probs=233.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 003122 166 MIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPS---RSTYNNLINACGS 242 (846)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~ 242 (846)
....+...|++++|...|.++.+.+ +.+..++..+...+.+.|++++|+.+++.+.+.+..++ ..++..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445567788888888888887743 33456777788888888888888888888776532221 2456777888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHH
Q 003122 243 TGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD----TTTHNIVIYCLVKLGQYDK 318 (846)
Q Consensus 243 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~ 318 (846)
.|++++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888888887653 23567788888888888888888888888876543322 1245567778888999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 319 AIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEI 398 (846)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (846)
|...|+++.+..+. +..++..++..+.+.|++++|.++|+++...+......++..++.+|...|++++|...++++
T Consensus 199 A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 199 ARALLKKALAADPQ---CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHhHCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998876544 566788888999999999999999999987642222456788889999999999999999998
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCC
Q 003122 399 KKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGS---NGLLAEAVEVFREMEQDGIEP 475 (846)
Q Consensus 399 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~~ 475 (846)
.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.++++|.+.++.|
T Consensus 276 ~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 276 LEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 875 466666788899999999999999999988876 6888888888887764 558899999999999877666
Q ss_pred CHH
Q 003122 476 NIV 478 (846)
Q Consensus 476 ~~~ 478 (846)
+..
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-18 Score=196.22 Aligned_cols=330 Identities=8% Similarity=-0.024 Sum_probs=262.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 003122 447 ALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVG 526 (846)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 526 (846)
.++..+.+.|++++|..+++..+... +-+......++.++...|+.+.|...++.+.... +.+...+..+...+.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34555666677777777776666653 2223344444455556777777777777766653 346677888888999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (846)
++++|+..|+++.+.. +.+...+..++..+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 9999999999998863 3356678888999999999999999999887764 3344444444 34788999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHHCC
Q 003122 607 MMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSK----VLLVAEFMREQD 682 (846)
Q Consensus 607 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~ 682 (846)
.++.....++...+..++..+...|++++|+..++++.+.. +.+...+..+...+...|++++ |+..|+++++..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 98875423345555666788899999999999999999842 3347788889999999999986 899999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHH
Q 003122 683 ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYS 761 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~ 761 (846)
+. +...+..++.++...|++++|+..++++....|. +..++..++.+|...|++++|++.|+++++ ..|+.. .+.
T Consensus 281 P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~ 356 (656)
T PRK15174 281 SD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNR 356 (656)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHH
Confidence 66 7788999999999999999999999999988888 678889999999999999999999999999 889654 455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 762 ILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 762 ~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.++.+|...|++++|+..|+++.+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999874
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-17 Score=184.17 Aligned_cols=455 Identities=12% Similarity=0.080 Sum_probs=248.4
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 003122 275 YKNGAQYSKALSYFELMKGTNIRPDT--TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQ 352 (846)
Q Consensus 275 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 352 (846)
..+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.....+ ........++..|...|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n---~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN---ISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCC
Confidence 345666666666666666542 332 122 555555666666666666666652111 122223333445556666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 003122 353 IENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNM 432 (846)
Q Consensus 353 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 432 (846)
+++|+++|+++++.. +-+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 666666666666553 223344445555566666666666666666553 34444444444444344445446666666
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCH
Q 003122 433 MRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNT 512 (846)
Q Consensus 433 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 512 (846)
+.+.. +.+...+..+..++.+.|-...|.++..+-... +.+. ....| . .+.|........ .++.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l-~-------~~~~a~~vr~a~----~~~~ 258 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQL-E-------RDAAAEQVRMAV----LPTR 258 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHH-H-------HHHHHHHHhhcc----cccc
Confidence 66553 334455555556666666666665554432211 0010 10000 0 000111100000 0000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCH-HHH----HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 003122 513 VAYNSAIGSYMNVGEYEKAIALYKCMKKR-KVMPDS-VTY----TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYS 586 (846)
Q Consensus 513 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 586 (846)
. ... +---.+.|+.-++.+... +..|.. ..| .-.+-++...|++.+++..++.+...+.+....+-.
T Consensus 259 ~----~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 259 S----ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred c----chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 0 000 001235566666665542 112321 112 223446677788888888888888776655566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKMSG-----CSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNI-----------EP 650 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-----------~p 650 (846)
+++++|...+++++|+.+|..+.... ..++......|..+|...+++++|..+++++.+..- .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 78888888888888888888876632 122344456778888888888888888888876210 12
Q ss_pred C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHH
Q 003122 651 D---SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQ 727 (846)
Q Consensus 651 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 727 (846)
+ ......++..+...|+..+|++.++++....|. +......+++++...|...+|++.++.+....|. +..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHH
Confidence 2 223334455566667777777777777665554 6666666666666777777777776666666555 5566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q 003122 728 LLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLK 765 (846)
Q Consensus 728 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 765 (846)
.+..+...|++++|..+.+++++ ..|+......|..
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 66666666777777666666666 6665554444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-15 Score=161.05 Aligned_cols=641 Identities=12% Similarity=0.048 Sum_probs=382.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGS 242 (846)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 242 (846)
.-...+.+...|++++|.+++.++.+.. +.+...|..|...|-+.|+.+++...+-..-... +-|...|..+......
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3344555666699999999999988754 5567889999999999999999988876655443 3366888888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChH----HHHHHHHHHHhcCCHHH
Q 003122 243 TGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTT----THNIVIYCLVKLGQYDK 318 (846)
Q Consensus 243 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~ 318 (846)
.|+++.|.-.|.+.++..+. +...+-.-...|-+.|+...|...|.++.....+.|.. .-..++..+...++.+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999887543 44444555677888999999999999988764322222 22334666777788889
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-----------------------
Q 003122 319 AIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSY----------------------- 375 (846)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----------------------- 375 (846)
|.+.++.......+ .-+...++.++..+.+...++.|...+..+......+|...|
T Consensus 299 a~~~le~~~s~~~~-~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 299 AAKALEGALSKEKD-EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHhhccc-cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 99999888873322 234556788888889999999998888887763333333222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 003122 376 ---NALMAAYASHGMSKEALSVFNEIKKNGL--CPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALID 450 (846)
Q Consensus 376 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 450 (846)
..+.-++......+....+..-..+... .-+...|.-+..+|...|++.+|+++|..+.......+...|..+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 1122223333333333333333333332 22344566666666666666666666666665544445556666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCccCHHHHHHHHHHH
Q 003122 451 AYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR--------DIKLNTVAYNSAIGSY 522 (846)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~ 522 (846)
.|...|.+++|.+.|++.+... +.+...-..|...+.+.|+.++|.+.+..+... +..|+........+.+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 6666666666666666666542 222334445555555666666666666553321 1222333333344445
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAE 602 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 602 (846)
.+.|+.++-+.+-..|+... .....+ + .+..++...- ....+.+-.......++.+-.+.++.....
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~------~~~~~~--f---~~~~k~r~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDF------LKKRYI--F---PRNKKKRRRA--IAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHH------HHHHHh--c---chHHHHHHHh--hccccccccchhHHHHHHHHhccCchHHhh
Confidence 55555555444443333211 000000 0 0000000000 000001112222223333333333322222
Q ss_pred HHHH------HHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHH---H-HHHHHHHHHhcCChh
Q 003122 603 SMFN------MMKMSGCSPD--VITYTAMLHAYNTAEDWEKACALFLEMETNNIE-PDSI---A-CSALMRAFNKGGQPS 669 (846)
Q Consensus 603 ~~~~------~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~---~-~~~l~~~~~~~g~~~ 669 (846)
.-.. --...|+..+ ...+.-++..+++.+++++|+.+...+...... -+.. . -...+.+.+..+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 1111 1111222222 134456677889999999999999999874321 2222 1 223455677899999
Q ss_pred HHHHHHHHHHHC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 003122 670 KVLLVAEFMREQ---DITFS-DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 670 ~A~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 745 (846)
.|...++.|+.. ...|. ...|++........++-.--.+++..+....+..++......++-....+.+.-|.+.+
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEY 763 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHH
Confidence 999999999864 11222 23344455566666665555666666665555544555556777888899999999999
Q ss_pred HHHHhcCCCcCHHHHH-HHHHHHHh--cCC--------HHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCcchHHH
Q 003122 746 FKIVSSGAEANFNTYS-ILLKNLLA--AGN--------WRKYIEVLQWMEDAGIQ-PSYGMFRDIVSFAQTRGGAEYAAI 813 (846)
Q Consensus 746 ~~~~~~g~~p~~~~~~-~l~~~~~~--~g~--------~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~ 813 (846)
-++.. ..||....+ .++-++.. .++ .-+.+.++++..+.... .....+.+++..+..-|-.+.|..
T Consensus 764 ~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~ 841 (895)
T KOG2076|consen 764 MRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVS 841 (895)
T ss_pred HHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99999 899855333 33333322 111 23456666666554222 134578899999999999999999
Q ss_pred HHHHHHHHhh
Q 003122 814 IQERIESLRM 823 (846)
Q Consensus 814 ~~~~l~~l~~ 823 (846)
+|+++.++.+
T Consensus 842 YYekvL~~~p 851 (895)
T KOG2076|consen 842 YYEKVLEVSP 851 (895)
T ss_pred HHHHHhCCCc
Confidence 9999998753
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-16 Score=176.30 Aligned_cols=461 Identities=12% Similarity=0.062 Sum_probs=310.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDI-VTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMA 380 (846)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 380 (846)
+...-+-...+.|+++.|++.|+++.+..+. +. ..+ .++..+...|+.++|+..+++.... ..........+..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~---~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPL---QSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc---chhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 3333444456788888888888888776544 21 222 6777777778888888888887721 1122223333455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHH
Q 003122 381 AYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAE 460 (846)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (846)
.|...|++++|+++|+++.+.... +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 777778888888888888775322 4555667777778888888888888877765 4555555444444444556656
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003122 461 AVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKK 540 (846)
Q Consensus 461 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 540 (846)
|++.++++.+.. +.+...+..++.++.+.|-...|.++...-... .+...+.. + +.+.|.+..+-.
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~-l-------~~~~~a~~vr~a-- 253 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQ-L-------ERDAAAEQVRMA-- 253 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHH-H-------HHHHHHHHHhhc--
Confidence 888888888753 334555666666666666666666544432211 01111100 0 111122111111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003122 541 RKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL--KIPLTNQVY----SSVISAYSKQGLIAEAESMFNMMKMSGCS 614 (846)
Q Consensus 541 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (846)
..++..- -. +---.+.|+.-++.+... ..|+....| .=.+-++...|++.++++.|+.+...+.+
T Consensus 254 --~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 254 --VLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred --ccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 1110000 00 001235566666666652 123322222 22345678899999999999999987755
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------
Q 003122 615 PDVITYTAMLHAYNTAEDWEKACALFLEMETNN-----IEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDI------ 683 (846)
Q Consensus 615 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 683 (846)
....+-..++++|...++.++|..+|+++.... ..++......|..+|..++++++|..+++++.+..+
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 455677899999999999999999999997632 122344467889999999999999999999998433
Q ss_pred -----CCCH---HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 684 -----TFSD---SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 684 -----~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
.|++ .....++..+...|++.+|++.++++....|. +..++..++.++...|...+|++.++.+.. +.|
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P 481 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVES--LAP 481 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCC
Confidence 2332 23455677889999999999999999999998 889999999999999999999999988888 899
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 003122 756 N-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDI 798 (846)
Q Consensus 756 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 798 (846)
+ ..+....+.++.+.|+|++|..+.+.+.+ ..|+......+
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l 523 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQEL 523 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHH
Confidence 5 55888899999999999999999999987 56776644443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-17 Score=161.95 Aligned_cols=503 Identities=13% Similarity=0.136 Sum_probs=322.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC--HHHHHHHH
Q 003122 268 HNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHN-IVIYCLVKLGQYDKAIDLFHSMREKRSECLPD--IVTFTSII 344 (846)
Q Consensus 268 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~li 344 (846)
...|.+-|.......+|+..|+-+.+...-|+.-... .+...+.+...+.+|+++++-.+..-|.+..+ +...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3444556666777788888888887776666654432 34566778888889999888877655443333 23445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--------HHHHHH
Q 003122 345 HLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSY--------TSLLNA 416 (846)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------~~ll~~ 416 (846)
-.+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|.+|..-...||..-| ..|+.-
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5677888899999888888876 577776555666666778888888888888765434443221 111111
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHH
Q 003122 417 YGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVS-ICTLLAACGRCGRKVN 495 (846)
Q Consensus 417 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~ll~~~~~~g~~~~ 495 (846)
-.+. ..+..|.+.+ ..+-++++-.--+++.--+.|+-.. +.--+..+-..-..+.
T Consensus 362 ai~n-------d~lk~~ek~~-----------------ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l 417 (840)
T KOG2003|consen 362 AIKN-------DHLKNMEKEN-----------------KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL 417 (840)
T ss_pred HHhh-------HHHHHHHHhh-----------------hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh
Confidence 1111 1111221110 0111222222222222112222110 0000000000000000
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHH
Q 003122 496 IDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR--LSRYSEALGFLDEM 573 (846)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~ 573 (846)
|. ..-..-...|.++|+++.|+++++-+.+..-+.-...-+.|-..+.- -.++-.|.++-+.+
T Consensus 418 a~---------------dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 418 AI---------------DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred hh---------------hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 00 00011234577899999999998888765433222222222222222 34677777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 574 MDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI 653 (846)
Q Consensus 574 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 653 (846)
+... .-+......-.+.-...|++++|.+.|++.+..+- .-......+.-.+...|+.++|+..|-++..- +..+..
T Consensus 483 ln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 483 LNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred hccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 6543 34444444444555568999999999999987421 11333444455577889999999999998762 334567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
....+...|....+...|++++.++...-+. ++.++..+++.|.+.|+..+|.+.+=.-..-.|. ++.+...|+.-|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~-dp~ilskl~dlydqegdksqafq~~ydsyryfp~-nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPN-DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC-NIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-CHHHHHHHHHHhhcccchhhhhhhhhhcccccCc-chHHHHHHHHHHH
Confidence 7888899999999999999999999886444 8899999999999999999999987766666666 7777788888999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEANFNTYSILLKN-LLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 812 (846)
...-+++|+.+|+++.- +.|+..-|-.++.. +.+.|+|++|+++|+...++ +..|..+.+-+...+-..| ..+++
T Consensus 638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg-l~d~k 713 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG-LKDAK 713 (840)
T ss_pred hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc-chhHH
Confidence 99999999999999998 99999988877655 77899999999999999875 6667777777766554444 34455
Q ss_pred HHHHHHHH
Q 003122 813 IIQERIES 820 (846)
Q Consensus 813 ~~~~~l~~ 820 (846)
++..++++
T Consensus 714 ey~~klek 721 (840)
T KOG2003|consen 714 EYADKLEK 721 (840)
T ss_pred HHHHHHHH
Confidence 55544433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-14 Score=138.53 Aligned_cols=299 Identities=16% Similarity=0.209 Sum_probs=204.5
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHH--HH-HHHHHHHhhCC-------------------C
Q 003122 134 ITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQID--KA-RGLFFEMQKWR-------------------C 191 (846)
Q Consensus 134 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A-~~~~~~~~~~~-------------------~ 191 (846)
+...|....+.-+|+.|+.. +.+.++.+--.|.+..+-.++-+ -| .+-|-.|..+| .
T Consensus 125 mIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~ 203 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL 203 (625)
T ss_pred HHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc
Confidence 34557888888999988854 45677776666655544322211 11 11222222221 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 003122 192 KPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIV 271 (846)
Q Consensus 192 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 271 (846)
+.+..++..||.++|+-...+.|.++|++......+.+..+||.+|.+-.- ....+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 456788889999999988889999999888877778888889988876532 2337788888888888999999999
Q ss_pred HHHHHcCCCHH----HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc--C----CCCCCCHHHH
Q 003122 272 LSAYKNGAQYS----KALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDK-AIDLFHSMREK--R----SECLPDIVTF 340 (846)
Q Consensus 272 l~~~~~~g~~~----~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~--~----~~~~~~~~~~ 340 (846)
+++..+.|+|+ .|.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... | +..+.|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 99988888876 456778888888999999999999888888877644 44444444331 1 1111245556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 003122 341 TSIIHLYSVNGQIENCKGVFNTMLAEG----LKPNI---VSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSL 413 (846)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 413 (846)
..-+..+....+.+-|.++..-+.... +.|+. .-|..+....|.....+.-...|+.|.-+-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 666677777777777777655543321 22332 23556666777777777777788877766666777777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC
Q 003122 414 LNAYGRSQQPVKAREVFNMMRINN 437 (846)
Q Consensus 414 l~~~~~~g~~~~A~~~~~~m~~~~ 437 (846)
+++..-.|.++-.-+++..++.-|
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhh
Confidence 777777777777777777777654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-13 Score=132.59 Aligned_cols=497 Identities=10% Similarity=0.043 Sum_probs=342.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 003122 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNALMA 380 (846)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~ 380 (846)
.|-....--...+++..|..+|++++..+.. +...|...+.+-.++..+..|..++++.+.. -|-+. .|-..+.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 3433444444566777788888887765543 6677777777777888888888888887765 33332 4555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHH
Q 003122 381 AYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAE 460 (846)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (846)
+--..|++..|.++|++..+ ..|+...|.+.|+.=.+.+.++.|..+++..+-. .|++.+|--....-.+.|+..-
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 55667888888888888776 4688888888888888888888888888877654 5788888777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC--HHHHHHHHHHHHhcCCH---HHH
Q 003122 461 AVEVFREMEQDGIEPNIV----SICTLLAACGRCGRKVNIDAVLLAAEMRDIKLN--TVAYNSAIGSYMNVGEY---EKA 531 (846)
Q Consensus 461 A~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~---~~A 531 (846)
|..+|..+++. ..|.. .+.++...=.++..++.|..++..++..= +.+ ...|......--+-|+. +++
T Consensus 226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 88888877764 12222 33333333345667778888887777652 222 33444444444445553 333
Q ss_pred HH-----HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HhcC
Q 003122 532 IA-----LYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQ-------VYSSVISAY---SKQG 596 (846)
Q Consensus 532 ~~-----~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~---~~~g 596 (846)
+. -|+.+++.+ +-|-.+|--.+..-...|+.+...++|+.++.. +||-.. +|.-+--++ ....
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 244555543 457777877888778889999999999999875 455322 111111111 2578
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHA----YNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVL 672 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 672 (846)
+.+.+.++|+..++. ++...+|+.-+--+ ..++.++..|.+++..++. .-|...++...+..=.+.+++|...
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHH
Confidence 899999999999883 33335555444433 4578899999999999885 6788889999999989999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 673 LVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV-VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
.+|++.++.+|. +..+|...+..-...|+++.|..+|+-+.+.... .....|.+.+..-...|.++.|..+|+++++
T Consensus 458 kLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~- 535 (677)
T KOG1915|consen 458 KLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD- 535 (677)
T ss_pred HHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH-
Confidence 999999998876 7788888888888999999999999988755432 2245678888888899999999999999999
Q ss_pred CCCcCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHCCCCCCHH-----hHHHHHHHHHhcCCcch
Q 003122 752 GAEANFNTYSILLKNLL-----AAG-----------NWRKYIEVLQWMEDAGIQPSYG-----MFRDIVSFAQTRGGAEY 810 (846)
Q Consensus 752 g~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~~~~~~ 810 (846)
..+...+|..++..-. +.| +...|..+|+++...--..++. .......+-...|....
T Consensus 536 -rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d 614 (677)
T KOG1915|consen 536 -RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGD 614 (677)
T ss_pred -hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhh
Confidence 7788888888877533 445 5667888888875431111111 23333444445555544
Q ss_pred HHHHHHHH
Q 003122 811 AAIIQERI 818 (846)
Q Consensus 811 a~~~~~~l 818 (846)
-..+..++
T Consensus 615 ~~~V~s~m 622 (677)
T KOG1915|consen 615 VERVQSKM 622 (677)
T ss_pred HHHHHHhc
Confidence 44444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-15 Score=149.59 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=113.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 521 SYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAE 600 (846)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 600 (846)
.+-..|++++|+..|-++... ...+......+...|....+..+|++++-++... +|.|+.+.+-|.+.|-+.|+-..
T Consensus 533 t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhh
Confidence 344566777777776665432 1234555566666677777777777777776654 56677777777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHH
Q 003122 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA-FNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~ 679 (846)
|.+.+-.-.+. ++-|..+..-|..-|....-+++|+.+|++..- +.|+..-|..++.. +.+.|++.+|+++|+...
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 77665443332 344566666667777777777777777777655 67777777665543 446777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC
Q 003122 680 EQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 680 ~~~~~~~~~~~~~l~~~~~~~g 701 (846)
..-+. +...+..++.++...|
T Consensus 688 rkfpe-dldclkflvri~~dlg 708 (840)
T KOG2003|consen 688 RKFPE-DLDCLKFLVRIAGDLG 708 (840)
T ss_pred HhCcc-chHHHHHHHHHhcccc
Confidence 65443 5666666666666555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-14 Score=146.80 Aligned_cols=507 Identities=12% Similarity=0.075 Sum_probs=328.1
Q ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 003122 264 DLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSI 343 (846)
Q Consensus 264 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 343 (846)
+..-+..+++-+..+.++..|.-+-+++...+. |...--.++.++.-.|+++.|..++..-.-.. .|..+....
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~----~d~~cryL~ 88 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLEK----RDIACRYLA 88 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh----hhHHHHHHH
Confidence 455566677777777888888888888876653 44444557778888888888888776543211 367777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 003122 344 IHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQP 423 (846)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 423 (846)
...+.+..++++|..++..... .-+...|-.--. ...-..+.+. ++.. +......+-.-...|....+.
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccH
Confidence 8888888888888887763310 111111100000 0000000111 0000 000011111112234455566
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 424 VKAREVFNMMRINNLKPNLVSYSALIDAYGSN-GLLAEAVEVFREMEQD-GIEPNIVSICTLLAACGRCGRKVNIDAVLL 501 (846)
Q Consensus 424 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 501 (846)
++|...|.+.... |...+..+...-... =-.++-.++|+.+--. -..-+......+.....-...-+.....-.
T Consensus 158 ~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 158 EEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred HHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 6777766666543 343333322111110 0011222222210000 001112222222221100000000000000
Q ss_pred HHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 003122 502 AAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLT 581 (846)
Q Consensus 502 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 581 (846)
+....+...+........+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-.++++. .|..
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~ 311 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSK 311 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCC
Confidence 01112234466677777888889999999999999998875 556666777777888999988888888888886 4778
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 582 NQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMR 660 (846)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 660 (846)
..+|-+++--|.-.|+..+|.+.|.+.... .|. ...|-..++.|.-.|.-++|+..+..+-+. ++-....+..++-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGM 388 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHH
Confidence 899999999999999999999999998874 344 678999999999999999999999988773 1212223444555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC----CCcc--chhhHHHHHHHHHh
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS----FHVV--SIGLLNQLLHLLGK 734 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~ 734 (846)
-|.+.++.+-|..+|.++....|. |+.....++-+....+.+.+|..+|+..... .+.. -..++++||++|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 688899999999999999987665 7888889999999999999999999876521 1111 23458999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 003122 735 SGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSF 801 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 801 (846)
.+++++|+..|++++. +.| |..+|..++-+|.-.|+.+.|++.|.+++. +.|+..+...++..
T Consensus 468 l~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 9999999999999999 899 677999999999999999999999999985 88988765555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-14 Score=136.28 Aligned_cols=431 Identities=17% Similarity=0.196 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHH-HHHHHHHHHCCCCCChHHHHHHH
Q 003122 196 ETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTG--NWREA-LKVCKKMTENGVGPDLVTHNIVL 272 (846)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~A-~~~~~~~~~~g~~~~~~~~~~ll 272 (846)
++=|.|+.. ..+|.+.++.-+|+.|...|...+...-..|++.-+-.+ ++--| ++.|-.|...|-. ...+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 344444443 345667777777777777777766666666655433222 22111 2233333333221 11222
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 003122 273 SAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQ 352 (846)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 352 (846)
+.|...+ -+|+.. +.+..++.+||.++|+--..+.|.+++++....... .+..+||.+|.+-.-.
T Consensus 191 ----K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k--v~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK--VYREAFNGLIGASSYS-- 255 (625)
T ss_pred ----ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe--eeHHhhhhhhhHHHhh--
Confidence 2233222 222222 224456666666666666666666666665543322 4555666655543221
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH-HH
Q 003122 353 IENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEA----LSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVK-AR 427 (846)
Q Consensus 353 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-A~ 427 (846)
...++..+|....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 1245555665555566666666666666666655432 3444555555555555555555555555544432 22
Q ss_pred HHHHHHHH----CCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 428 EVFNMMRI----NNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAA 503 (846)
Q Consensus 428 ~~~~~m~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 503 (846)
.++.++.. +.++|- -+.|...|...+..|.+..+.+-|..+....
T Consensus 334 ~~i~dI~N~ltGK~fkp~-------------------------------~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll 382 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPI-------------------------------TPTDNKFFQSAMSICSSLRDLELAYQVHGLL 382 (625)
T ss_pred HHHHHHHHhhccCcccCC-------------------------------CCchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222211 111110 0112233344444444444444444444333
Q ss_pred HhCC----CccC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003122 504 EMRD----IKLN---TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL 576 (846)
Q Consensus 504 ~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 576 (846)
.... +.++ ..-|..+....|+....+.-+..|+.|.-.-+.|+..+...++++....+.++-.-+++.+++..
T Consensus 383 ~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 383 KTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 2211 1111 12344555666666677777777777776666666666666777666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcC--------------------CHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 577 KIPLTNQVYSSVISAYSKQG--------------------LIAEA-ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEK 635 (846)
Q Consensus 577 ~~~~~~~~~~~l~~~~~~~g--------------------~~~~A-~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (846)
|.........-+...+++.+ ++.++ ...-..+.+.. -.....+.++-.+.+.|..++
T Consensus 463 ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qk 540 (625)
T KOG4422|consen 463 GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQK 540 (625)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHH
Confidence 43222222222222222221 01111 11111222222 223344555555666666666
Q ss_pred HHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003122 636 ACALFLEMETNN----IEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQD 682 (846)
Q Consensus 636 A~~~~~~~~~~g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (846)
|.+++.-+...+ ..|...+..-+++.-...+++..|+..++-|...+
T Consensus 541 A~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 541 AWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 666666664432 12223333345555555566666666666665543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-16 Score=161.84 Aligned_cols=281 Identities=14% Similarity=0.101 Sum_probs=227.8
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHH
Q 003122 492 RKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKV--MPDSVTYTVLISSCCRLSRYSEALGF 569 (846)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 569 (846)
+..+|...|...... +.....+...+..+|...+++++|.++|+.+.+... .-+..+|.+.+..+ +-+-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL----q~~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL----QDEVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH----HhhHHHHH
Confidence 345666666663322 233445666778889999999999999998887521 12556777776554 22333444
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 570 LD-EMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSP-DVITYTAMLHAYNTAEDWEKACALFLEMETNN 647 (846)
Q Consensus 570 ~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 647 (846)
+. ++++. .+..+.+|.+++++|.-+++.+.|++.|++.++. .| ...+|+.+++-+.....+|+|...|+.++.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 43 33443 3678899999999999999999999999999985 56 478999999999999999999999999987
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH
Q 003122 648 IEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN 726 (846)
Q Consensus 648 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 726 (846)
+.|. -.+|..|+-.|.++++++.|.-.|+++++.+|. +.....+++..+.+.|+.++|+++++++...+|. ++..-.
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 5555 448888999999999999999999999998877 7888889999999999999999999999888888 666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
..+..+...+++++|...++++.+ +.|+ ..+|..++..|.+.|+.+.|+.-|..|.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 888899999999999999999999 9995 568889999999999999999999999874
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-14 Score=142.16 Aligned_cols=234 Identities=15% Similarity=0.102 Sum_probs=149.0
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
-.|+.-.|..-|+.+++.. +.+...|.-+..+|....+.++-...|++....+ +-|+.+|..-+.++.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3456666666666666653 2222335555666666667777777777666643 2245566666666666667777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 639 LFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 639 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
-|++.+. +.|+ ...|..+..+..+++++++++..|+...+.-|. .++.|+..+.++..++++++|++.|+.+....
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 7777766 4443 445666666666777777777777777765444 56667777777777777777777777665444
Q ss_pred Ccc-----c--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 718 HVV-----S--IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 718 ~~~-----~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
|.. + +.+.-.++-.- ..+++..|.+++.++++ ++|. ..+|..|+..-.+.|+.++|+++|++... +.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~--lA 567 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ--LA 567 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HH
Confidence 441 1 11222222222 34899999999999999 8884 45888899999999999999999988765 33
Q ss_pred CCHHhHHHHHHHH
Q 003122 790 PSYGMFRDIVSFA 802 (846)
Q Consensus 790 p~~~~~~~l~~~~ 802 (846)
.......+..++.
T Consensus 568 rt~~E~~~a~s~a 580 (606)
T KOG0547|consen 568 RTESEMVHAYSLA 580 (606)
T ss_pred HhHHHHHHHHHHH
Confidence 3333344444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-14 Score=141.20 Aligned_cols=412 Identities=14% Similarity=0.083 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 003122 301 TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPD-IVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNAL 378 (846)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 378 (846)
..+.....-|.+.|.+++|++.+.+.++.. || .+.|.....+|...|++++..+...+.++. .|+-+ .+..-
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~----p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RR 189 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELC----PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRR 189 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcC----CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHH
Confidence 345666777788888999999999888754 44 778888888888899999888888888775 56543 56666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH--------HH-CC--CCcCHHHHHH
Q 003122 379 MAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMM--------RI-NN--LKPNLVSYSA 447 (846)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m--------~~-~~--~~~~~~~~~~ 447 (846)
..++-..|++++|+.= .|..++..++....-..-+.+++.+. .+ ++ +-|......+
T Consensus 190 A~A~E~lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~s 256 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIAS 256 (606)
T ss_pred HHHHHhhccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 6777777777776532 22233333333333333333333221 11 11 1233322222
Q ss_pred HHHHHHhC------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCccC-------
Q 003122 448 LIDAYGSN------GLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR---DIKLN------- 511 (846)
Q Consensus 448 li~~~~~~------g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~------- 511 (846)
....+... ...+++-..+....+.-..-... .+..|...+.+-... ....+
T Consensus 257 yf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e-------------~Y~~a~~~~te~~~~~~~~~~~n~~d~~le 323 (606)
T KOG0547|consen 257 YFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEE-------------GYLKAYDKATEECLGSESSLSVNEIDAELE 323 (606)
T ss_pred HHhhccccccccccCCCccchhhHHHHHHHHHhhCch-------------hHHHHHHHHHHHhhhhhhhccccccchhHH
Confidence 22222110 00011111111111100000011 122222222211110 00111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 512 --TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVI 589 (846)
Q Consensus 512 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 589 (846)
..+...-...+.-.|+.-.|...|+..++....++. .|..+...|....+.++....|+++.+.+ +.+..+|..-+
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRg 401 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRG 401 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHH
Confidence 222333333455678888999999998887544333 26677778888999999999999998876 66778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003122 590 SAYSKQGLIAEAESMFNMMKMSGCSP-DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQP 668 (846)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 668 (846)
+++.-.+++++|..-|++.... .| ++..|-.+..+..+.+++++++..|++.+.. ++.-+..|+.....+..++++
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhH
Confidence 8888888999999999999885 34 3677777777777888999999999999874 444477888888999999999
Q ss_pred hHHHHHHHHHHHCCCC-----CCHHHHHH-HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 669 SKVLLVAEFMREQDIT-----FSDSIFFE-MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 669 ~~A~~~~~~~~~~~~~-----~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
+.|.+.|+.+++..+. .+...+.. .+..+.-.+++.+|+.++.++.+.+|. .-.++.+|+......|++++|+
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999875433 12222221 112233447889999999999988888 5578889999999999999999
Q ss_pred HHHHHHHh
Q 003122 743 KLFFKIVS 750 (846)
Q Consensus 743 ~~~~~~~~ 750 (846)
++|++...
T Consensus 558 elFEksa~ 565 (606)
T KOG0547|consen 558 ELFEKSAQ 565 (606)
T ss_pred HHHHHHHH
Confidence 99999876
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-15 Score=155.70 Aligned_cols=285 Identities=12% Similarity=0.090 Sum_probs=235.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLK--IPLTNQVYSSVISAYSKQGLIAEAESM 604 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 604 (846)
+.++|+..|..+... +.........+..+|...+++++|.++|+.+.+.. .-.+..+|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 568899999985544 33344566778899999999999999999998753 12356677776654322 222332
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003122 605 F-NMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQD 682 (846)
Q Consensus 605 ~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (846)
+ +.+.... +-.+.+|.+++++|.-+++.+.|++.|+++++ +.| ...+|..++.-+.....+|.|...|+.++..+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2 3344431 33489999999999999999999999999998 677 57899999998999999999999999999866
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHH
Q 003122 683 ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYS 761 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 761 (846)
+. .-.+|+.++-+|.++++++.|+-.|+++.+.+|. +..+...++..+.+.|+.|+|++++++++. ++| |+..-+
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~ 561 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKY 561 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHH
Confidence 55 5677889999999999999999999999999999 667777899999999999999999999999 999 788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCcchHHHHHHHHHHHhhcc
Q 003122 762 ILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSFAQTRGGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 762 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~ 825 (846)
..+..+...|++++|+..++++.+ +.|+.. .+..++..+.+.|..+.|..-+..+..|.++-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 999999999999999999999988 667654 66777899999999999998888777766553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-13 Score=136.96 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=225.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 003122 473 IEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTV 552 (846)
Q Consensus 473 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 552 (846)
...+........+-|...+++.+..++.+.+.+.+ +++...+..-|..+...|+..+-..+=.++.+.- +-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 34455566666677777888888888888887764 5566666666778888888888777777787763 446778999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003122 553 LISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAED 632 (846)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 632 (846)
+..-|...|++.+|..+|.+....+ +.-...|..++..|+-.|..++|...|..+.+. ++-...-+--++.-|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 9999999999999999999987754 344568999999999999999999999888773 11122223345566888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHH
Q 003122 633 WEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ----DIT--FSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 633 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A 706 (846)
.+-|.+.|.++... .+.|+...+-++-...+.+.+.+|..+|+..+.. +.+ .-..+++.++.+|.+.+++++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999999873 2446778888888888889999999999988841 111 1345688999999999999999
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLK 765 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 765 (846)
+..+++.....|. ++.++.+++..|...|+++.|+..|.+++- +.||...-..++.
T Consensus 475 I~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 9999999988888 889999999999999999999999999999 9998765544444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-10 Score=117.60 Aligned_cols=491 Identities=13% Similarity=0.115 Sum_probs=287.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAA 381 (846)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 381 (846)
.|...+..+.+.|++......|++.+..-+- ......|...+......|-++-+..++++.++. ++..-+-.+..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 4444445555555555555555555442211 112234555555555555555666666665543 22234445555
Q ss_pred HHhcCCHHHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCcCH--HHHHHHHH
Q 003122 382 YASHGMSKEALSVFNEIKKNG------LCPDIVSYTSLLNAYGRSQQPV---KAREVFNMMRINNLKPNL--VSYSALID 450 (846)
Q Consensus 382 ~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~---~A~~~~~~m~~~~~~~~~--~~~~~li~ 450 (846)
+++.+++++|.+.+...+... -+.+...|.-+.+...+.-+.- ....++..+... -+|. ..|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 556666666666555554321 1123333444444433332221 122333333332 2333 35777788
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHH
Q 003122 451 AYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEK 530 (846)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 530 (846)
-|.+.|.+++|.++|++.++. .....-|..+.++|..-....-+..+- .....+.... ..-+++-
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHH
Confidence 888888888888888877764 344445566666665433322222211 0101110100 0111222
Q ss_pred HHHHHHHHhhCC-----------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHH
Q 003122 531 AIALYKCMKKRK-----------VMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPL------TNQVYSSVISAYS 593 (846)
Q Consensus 531 A~~~~~~~~~~~-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~ 593 (846)
.+..|+.+.+.. -+-+...|..-+.. ..|+..+-+..+.++++. +.| -...|..+...|.
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 333333333321 12234444444332 356777778888887764 222 2346888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CC-------CHH
Q 003122 594 KQGLIAEAESMFNMMKMSGCSPD---VITYTAMLHAYNTAEDWEKACALFLEMETNNI----------EP-------DSI 653 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----------~p-------~~~ 653 (846)
..|+++.|..+|++..+..++-- ..+|..-..+-.++.+++.|+++.+++....- .| ...
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 99999999999999887533211 35666677777788889999998888764211 11 133
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc-hhhHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS-IGLLNQLLHLL 732 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 732 (846)
.|..+++.--..|-++....+|+++++..+. .+......+..+....-++++.++|++-....+.+. ..+|+..+..+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 5667777777789999999999999997765 666666677777788889999999999877665443 67888887776
Q ss_pred Hhc--C-CHHHHHHHHHHHHhcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhc
Q 003122 733 GKS--G-RIESMMKLFFKIVSSGAEANFN--TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG--MFRDIVSFAQTR 805 (846)
Q Consensus 733 ~~~--g-~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~ 805 (846)
.+. | +++.|+.+|+++++ |..|... .|...+..=.+.|.-..|+.+|+++-.. +++... +|+..+.-.+..
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~ 635 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEI 635 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHH
Confidence 552 3 99999999999999 5666544 3333333345569999999999997653 555433 466656555554
Q ss_pred CCcchHHHHHHHHHH
Q 003122 806 GGAEYAAIIQERIES 820 (846)
Q Consensus 806 ~~~~~a~~~~~~l~~ 820 (846)
-..+...+||++.-+
T Consensus 636 yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 636 YGVPRTREIYEKAIE 650 (835)
T ss_pred hCCcccHHHHHHHHH
Confidence 455666666665444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-11 Score=120.19 Aligned_cols=431 Identities=12% Similarity=0.096 Sum_probs=223.3
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 171 ARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREAL 250 (846)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 250 (846)
-.++.+..|+.+|+.+.... ..+...|...+.+=.++..+..|..+++..+..=+..| ..|--.+.+=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHH
Confidence 34455566666666665532 34455555566666666666666666666555321111 12333333333456666666
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003122 251 KVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKR 330 (846)
Q Consensus 251 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 330 (846)
++|++..+ ..|+...|++.|+.=.+....+.|..+|+...-. .|++.+|-..+..--+.|+...|..+|+.+.+.-
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 66666655 3466666666666666666666666666666543 4666666666666666666666666666665432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHH
Q 003122 331 SECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPN--IVSYNALMAAYASHGMSKEALSV--------FNEIKK 400 (846)
Q Consensus 331 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~ 400 (846)
.+-.-+...+.+....-..+..++.|.-+|+-.++. ++.+ ...|......--+-|+.....+. ++.+.+
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 110112334455555555566777777777777765 2222 22444444443444554433332 233333
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHH--------HHhCCCHHHHHHHHHHHHH
Q 003122 401 NGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNL--VSYSALIDA--------YGSNGLLAEAVEVFREMEQ 470 (846)
Q Consensus 401 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~~~~ 470 (846)
.+ +.|-.+|--.++.-...|+.+...++|++.+.+ ++|-. ..|...|-. -....+.+.+.++|+..++
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 32 335566666666666778888888888887765 34421 122222211 1235667777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003122 471 DGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTY 550 (846)
Q Consensus 471 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 550 (846)
. ++....|+..+--.|+ ..-.++.++..|.+++...+.. -|-..+|
T Consensus 395 l-IPHkkFtFaKiWlmyA-------------------------------~feIRq~~l~~ARkiLG~AIG~--cPK~KlF 440 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYA-------------------------------QFEIRQLNLTGARKILGNAIGK--CPKDKLF 440 (677)
T ss_pred h-cCcccchHHHHHHHHH-------------------------------HHHHHHcccHHHHHHHHHHhcc--CCchhHH
Confidence 3 4555555554443332 2223344444444444444322 3444444
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh
Q 003122 551 TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSG-CSPDVITYTAMLHAYNT 629 (846)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~ 629 (846)
...|..=.+.+.++....++++.++.+ |.+..+|...+..-...|+.+.|..+|+.++... ..-....|.+.|+.-..
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 444444444455555555555555443 3444444444444444555555555555544421 00012334444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 003122 630 AEDWEKACALFLEMET 645 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~ 645 (846)
.|.+++|..+|+++++
T Consensus 520 ~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 520 EGEFEKARALYERLLD 535 (677)
T ss_pred cchHHHHHHHHHHHHH
Confidence 5555555555555554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-12 Score=129.79 Aligned_cols=365 Identities=11% Similarity=0.018 Sum_probs=243.2
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HH
Q 003122 403 LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIV--SI 480 (846)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~ 480 (846)
...|...+-...-.+.+.|....|+..|......- +-.-..|..|.... -+.+. ...... |.+.|.. .-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHHH
Confidence 34455555555556667788888888887776531 33444444443332 22222 222222 2222221 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHH
Q 003122 481 CTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKV--MPDSVTYTVLISSCC 558 (846)
Q Consensus 481 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~ 558 (846)
--+..++....+.+++..-.......|++.+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv-- 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV-- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--
Confidence 223445556667777777777777777776666666666666777888888888888887631 1255667666533
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKAC 637 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 637 (846)
+..+ ..+.++.+-.-.-.+--+.|...+++-|+-.++.++|...|+..++. .|. ...|+.+++-|...++...|+
T Consensus 309 ~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHH
Confidence 2221 22222322221111334457777888888888888999999888885 344 678888888888888888899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 638 ALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 638 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
.-++++++- .+-|-.+|.+|+.+|.-.+...=|+-+|+++.+..|. |...|..++.+|.+.++.++|+..++++...+
T Consensus 385 ~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 999888883 2346778888888888888888888888888887655 77888888888888889999998888887655
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 718 HVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS----G-AEANFN-TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 718 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.. ...++..|+..|.+.++.++|..+|++.++. | ..|+.. +-.-|+..+.+.+++++|..+......
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 54 5567888888888888999998888888762 2 223222 333466668888888888777666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=161.78 Aligned_cols=261 Identities=17% Similarity=0.156 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 517 SAIGSYMNVGEYEKAIALYKCMKKRKVMPDS-VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQ 595 (846)
Q Consensus 517 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 595 (846)
.+...+.+.|++++|+++++.......+|+. .-|..+.......+++++|...++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 4566777888888888888655444322333 334445556667788888888888888764 3355566666666 688
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNN-IEPDSIACSALMRAFNKGGQPSKVLLV 674 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 674 (846)
+++++|.++++...+. .++...+..++..+.+.++++++..+++++.... .+.+...|..++..+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888877654 3566677778888888889999888888877532 345667788888888889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 675 AEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 754 (846)
++++++..|. +......++..+...|+.+++.++++......|. ++..|..++.+|...|+.++|...|+++.+ ..
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~ 244 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-DPDLWDALAAAYLQLGRYEEALEYLEKALK--LN 244 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-SCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HS
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHHhcccccccccccccccccc--cc
Confidence 9999887665 6777788888888888888888888777655544 556778888888888999999999999888 78
Q ss_pred c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 755 A-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 755 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
| |+.+...++.++...|+.++|..+++++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 8 566788888888889999999888887754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-10 Score=116.33 Aligned_cols=348 Identities=10% Similarity=0.100 Sum_probs=214.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC---
Q 003122 371 NIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPD------IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPN--- 441 (846)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 441 (846)
++..|..-+..+ .|+..+-...+.+..+. +.|- ...|..+...|-..|+++.|..+|++..+...+.-
T Consensus 348 nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 333444444333 46667777777776653 2222 24577778888888888888888888776543222
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003122 442 LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGS 521 (846)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 521 (846)
..+|......-.+..+++.|+++++.+... |.... ..+...+....+. + ..+...|...++.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~r-l---------hrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQAR-L---------HRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHHH-H---------HHhHHHHHHHHHH
Confidence 345666666677777888888877777652 22211 1112222211110 0 1145567778888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCC
Q 003122 522 YMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTN-QVYSSVISAYSK---QGL 597 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~ 597 (846)
--..|-++....+|+.+++..+. +..........+-...-++++.+.|++-+..-..|++ ..|+..+.-+.+ ...
T Consensus 487 eEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 88888999999999999886543 2222222222344556688888888887765333443 456665555443 346
Q ss_pred HHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 003122 598 IAEAESMFNMMKMSGCSPDVIT--YTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
++.|..+|++.++ ||+|...- |-.....--+.|-...|+.+++++... +++. ...|+..+.--...=-+....+
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 8999999999998 67766332 222222234568888999999997653 4443 3356666553333223455678
Q ss_pred HHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHhhc-cCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 003122 674 VAEFMREQDITFSDSI---FFEMVLACSLLRDWKTTIDLIKQME-PSFHVVSIGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
+|+++++.= |+... ....++.-+..|..+.|..++.-.. -.+|..+...|.+--..-.++|+-+.-.++
T Consensus 644 iYekaIe~L--p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 644 IYEKAIESL--PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHhC--ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 888888742 23322 2334455678899999998887654 346777888898888888899984444333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-12 Score=127.84 Aligned_cols=256 Identities=14% Similarity=0.088 Sum_probs=136.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCH
Q 003122 416 AYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGI--EPNIVSICTLLAACGRCGRK 493 (846)
Q Consensus 416 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~ 493 (846)
+|-...+.+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+... -.|..+|+.++-.-..+..+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3333344455555555555555443333333333344445556666666666555420 01233443333221111111
Q ss_pred HH-HHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 494 VN-IDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 494 ~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
.- |..++ .+. +.-+.++-.+.+.|.-.++.++|+..|+..++.+ +.....|+.+..-|....+...|++.++.
T Consensus 316 s~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 00 00000 000 1123344445555666666666666666666653 22344566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS 652 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 652 (846)
+++.+ |.|-..|..|+++|.-.+...-|+-.|+++.... +-|...|.+|+.+|.+.++.++|++.|.+....| ..+.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 66654 5566666666666666666666666666666632 2236666666666666666666666666666543 2244
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
.++..|+..|-+.++.++|...|++-++
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5666666666666666666666666554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-13 Score=145.49 Aligned_cols=257 Identities=9% Similarity=0.019 Sum_probs=197.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 519 IGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYT--VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 519 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
..+..+.|+++.|...|.++.+. .|+..... .....+...|++++|...++++.+.. |.+..+...+...|.+.|
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 44446788888888888888775 45543322 33567778899999999999888875 667788888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 003122 597 LIAEAESMFNMMKMSGCSPDV-------ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPS 669 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 669 (846)
++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+... .+.++.....+..++...|+.+
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHH
Confidence 999999999998886543222 13333344444445566666777766442 3456778888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 670 KVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIV 749 (846)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 749 (846)
+|...+++..+.. ++..... .......++.+++++.+++..+..|. ++..+..++..|...|++++|++.|++++
T Consensus 281 ~A~~~L~~~l~~~--~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 281 TAQQIILDGLKRQ--YDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHhcC--CCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998843 3443222 23334558999999999999988887 78888999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 750 SSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 750 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+ ..|+...+..|+.++.+.|+.++|..+|++....
T Consensus 356 ~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 356 K--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred h--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9 8999999999999999999999999999987653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-12 Score=136.16 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CcchHHHHHHHHHHHhhc
Q 003122 760 YSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRG---GAEYAAIIQERIESLRMK 824 (846)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~l~~l~~~ 824 (846)
...|+..|.+.|+|+.|..+|.++. +.|++....++++.+.... +.+++....++..++...
T Consensus 710 ~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~ 774 (1088)
T KOG4318|consen 710 NDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTL 774 (1088)
T ss_pred HHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccc
Confidence 3346667888888888888888876 6677777777766665433 555555555555554433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-13 Score=143.87 Aligned_cols=258 Identities=11% Similarity=0.013 Sum_probs=122.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 519 IGSYMNVGEYEKAIALYKCMKKRKVMPDS--VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 519 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
..+..+.|+++.|...+.+..+.. |+. .........+...|++++|...++.+.+.. |.+..++..+...+.+.|
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 344445555555555555554431 222 122223444555555666665555555543 344455555555566666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChh
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYT----AMLHAYNTAEDWEKACALFLEMETNN---IEPDSIACSALMRAFNKGGQPS 669 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~~~l~~~~~~~g~~~ 669 (846)
++++|.+.+..+.+.+.. +...+. .....+...+..+++.+.+.++.+.. .+.+...+..++..+...|+.+
T Consensus 202 d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 666666666655554322 221111 00111112222222233333333311 0124555555556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhhccCCCccch--hhHHHHHHHHHhcCCHHHHHHHHH
Q 003122 670 KVLLVAEFMREQDITFSDSIF-FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSI--GLLNQLLHLLGKSGRIESMMKLFF 746 (846)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 746 (846)
+|.+.+++.++..++.....+ ..........++.+.+++.+++..+..|. ++ ....++++.|.+.|++++|.+.|+
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 666666666654433211110 11111122234555555555555555554 44 445556666666666666666666
Q ss_pred --HHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 747 --KIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 747 --~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
.+.+ ..|+...+..++..+.+.|+.++|.++|++.
T Consensus 360 ~a~a~~--~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 360 NVAACK--EQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhHHhh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444 5555555555566666666666666655554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-13 Score=143.25 Aligned_cols=294 Identities=12% Similarity=-0.012 Sum_probs=224.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 523 MNVGEYEKAIALYKCMKKRKVMPDS-VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 601 (846)
...|+++.|.+.+.+..+. .|+. ..+-....+....|+++.|..++.++.+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3689999999999888776 3443 344555677888999999999999998754222223455568889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChhHHHHHHHH
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACS----ALMRAFNKGGQPSKVLLVAEF 677 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~ 677 (846)
...++.+.+.. +-+...+..+...+.+.|++++|.+++.++.+.+..+. ..+. .........+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999874 33578899999999999999999999999998764433 2221 111222344444555566666
Q ss_pred HHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 678 MREQDIT---FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLL-NQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 678 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
+.+..+. .+...+..++..+...|+.++|.+.+++..+..|......+ ..........++.+.+.+.+++.++ .
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--N 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--h
Confidence 6664442 37888899999999999999999999999888777432211 1122222345789999999999999 8
Q ss_pred CcC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 003122 754 EAN-F--NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLR 822 (846)
Q Consensus 754 ~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~ 822 (846)
.|+ . .....+++.+.+.|+|++|.+.|+++......|++..+.+++..+...|+.++|..+|++...+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 895 4 46678899999999999999999964444468999888999999999999999999999876644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-12 Score=133.14 Aligned_cols=274 Identities=14% Similarity=0.143 Sum_probs=186.0
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 181 GLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENG 260 (846)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g 260 (846)
.++-.+...|+.|+.+||.++|..||..|+.+.|- +|..|.-...+.+...++.++.+....|+.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556677889999999999999999999999998 9999988888889999999999998888887776
Q ss_pred CCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHH
Q 003122 261 VGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTF 340 (846)
Q Consensus 261 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (846)
.|-..+|..|+.+|...||... |+...+ ..-.++..+...|....-..++..+.- .+...||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAEN- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHH-
Confidence 4788899999999999999765 222221 112233344555555555555544322 2333455443
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 003122 341 TSIIHLYSVNGQIENCKGVFNTMLAEGL-KPNIVSYNALMAAYASH-GMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYG 418 (846)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (846)
.+....-.|-++.+++++..+..... .|-.+ ++.-+... ..+++-..+.+...+ .|+..+|.+++..-.
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRAL 215 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHH
Confidence 33334445666666666655432211 11111 13322222 222333333222222 478888888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 419 RSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 419 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 492 (846)
..|+++.|..++.+|.+.|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.+.|.
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888888888888887776666655 77778888888888888888888888877777776555
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=155.49 Aligned_cols=262 Identities=14% Similarity=0.084 Sum_probs=116.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003122 552 VLISSCCRLSRYSEALGFLDEMMDLK-IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA 630 (846)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 630 (846)
.+...+.+.|++++|.+++++..... .+.+...|..+.......++.+.|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 55777889999999999997665543 34566667777788888999999999999999864 2246667777777 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 631 EDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQD-ITFSDSIFFEMVLACSLLRDWKTTIDL 709 (846)
Q Consensus 631 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 709 (846)
+++++|.+++++..+. .+++..+..++..+...|+++++..+++.+.... ...+...|...+.++.+.|++++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999888763 3566777888889999999999999999988633 345777888999999999999999999
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003122 710 IKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGI 788 (846)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 788 (846)
++++....|. +..+...+++.+...|+.+++.++++...+ ..| |+..+..++.+|...|+.++|+.++++..+. -
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLK--AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HCcCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 9999999998 778999999999999999999999999888 435 6668889999999999999999999999874 2
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 003122 789 QPSYGMFRDIVSFAQTRGGAEYAAIIQERIESL 821 (846)
Q Consensus 789 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l 821 (846)
..|+....+++..+...|+.++|..++.++-+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 347778889999999999999999999887654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-11 Score=112.59 Aligned_cols=500 Identities=12% Similarity=0.114 Sum_probs=235.7
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 277 NGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENC 356 (846)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 356 (846)
...++..|+.+++.-...+-+....+-..+..++.+.|++++|...+.-+.++. + ++...+..|.-.+.-.|.+.+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~--~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-D--APAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-C--CCcccchhHHHHHHHHHHHHHH
Confidence 344455555555444433222222333334455555566666655555554421 1 3444444444444445555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003122 357 KGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN 436 (846)
Q Consensus 357 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 436 (846)
..+-.... -+...-..|...-.+.++-++-..+.+.+.. ...--.+|.........+.+|++++..+...
T Consensus 111 ~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55443321 1222223333333444554444444444432 1122233444444445555666666555543
Q ss_pred CCCcCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHH
Q 003122 437 NLKPNLVSYSALID-AYGSNGLLAEAVEVFREMEQDGIEPNI-VSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVA 514 (846)
Q Consensus 437 ~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 514 (846)
.|+....|.-+. .|.+..-++-+.+++.-.++. .||. ...+..+....+.=.-..|+.-...+...+-. .
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~--- 252 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E--- 252 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---
Confidence 233333333222 334445555555555555443 2332 22222111111110101111111111111000 0
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 515 YNSAIGSYMNVG-----EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVI 589 (846)
Q Consensus 515 ~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 589 (846)
-..+.-+++.+ .-+.|++++-.+.+. .|.. -..|+--|.+.++..+|..+.+++. |.++.-|..-+
T Consensus 253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKg 323 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKG 323 (557)
T ss_pred -chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHH
Confidence 01112222221 234555555544433 2222 2234445566666666666655532 12222222212
Q ss_pred HHHHhcC-------CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 590 SAYSKQG-------LIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA 661 (846)
Q Consensus 590 ~~~~~~g-------~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 661 (846)
-.++..| .+.-|.+.|+..-..+..-| +.--..+...+.-..++++.+.+++.+... +..|...-..+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHH
Confidence 2222222 24445555554443333222 222334445555556677777777766654 33333334456777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDITFSDSIF-FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
++..|++.+|.++|-+...-.++ +..+| ..++.+|.+.++.+-|-+++-++.. |......+..++..|.+.+.+=-
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766654444 33444 3445567777777777777766542 22234456677788888888888
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCcchHHHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSFAQTRGGAEYAAIIQERIE 819 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~l~ 819 (846)
|.+.|+.+-. ++|++..| .|+-.....+|+.+....-.|-+. ..+.++..+. ...+.+++-+.+-+.
T Consensus 480 aaKAFd~lE~--lDP~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr-~~~nsq~E~mikvvr 547 (557)
T KOG3785|consen 480 AAKAFDELEI--LDPTPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLR-MKPNSQCEFMIKVVR 547 (557)
T ss_pred HHHhhhHHHc--cCCCcccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHH-hCCCchHHHHHHHHH
Confidence 8888888877 88888777 466656666777766544334333 2333333333 333444555555444
Q ss_pred HHh
Q 003122 820 SLR 822 (846)
Q Consensus 820 ~l~ 822 (846)
.+.
T Consensus 548 kwa 550 (557)
T KOG3785|consen 548 KWA 550 (557)
T ss_pred HHH
Confidence 443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-12 Score=139.37 Aligned_cols=285 Identities=13% Similarity=0.062 Sum_probs=220.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHH
Q 003122 524 NVGEYEKAIALYKCMKKRKVMPDSVT-YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVY--SSVISAYSKQGLIAE 600 (846)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~ 600 (846)
..|++++|.+.+....+.. ++... |.....+..+.|+++.|...+.++.+. .|+.... ......+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998887765542 22333 333344558899999999999999875 4554332 244778899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHH
Q 003122 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS-------IACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~ 673 (846)
|...++++.+.. +-+...+..+...|.+.|+|++|.+++.++.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999864 335888999999999999999999999999986544322 133344444444455566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
+++...+.- +.++.....++..+...|+.++|...+++.....+.+ .. .+..+....++.+++.+.+++.++ .
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~--~l--~~l~~~l~~~~~~~al~~~e~~lk--~ 323 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE--RL--VLLIPRLKTNNPEQLEKVLRQQIK--Q 323 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HH--HHHHhhccCCChHHHHHHHHHHHh--h
Confidence 666665432 2378888999999999999999999999998755542 21 233334456999999999999999 8
Q ss_pred CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 003122 754 EAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLR 822 (846)
Q Consensus 754 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~ 822 (846)
.|| ...+..++..+.+.|+|++|.+.|+++.+ ..|+...+..+...+.+.|+.++|..+|++-..+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 995 55788999999999999999999999997 67999988899999999999999999999876654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-12 Score=123.22 Aligned_cols=293 Identities=11% Similarity=0.091 Sum_probs=228.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHH
Q 003122 525 VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLK-IPLT--NQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A 601 (846)
..+.++|+++|-+|.+.. +....+-.+|.+.|.+.|..+.|+.+++.+.+.- ...+ ..+...|+.-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 577899999999999853 2244456678889999999999999999988741 1111 12345677889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD----SIACSALMRAFNKGGQPSKVLLVAEF 677 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (846)
+.+|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+-.+. ...|.-|...+....+.+.|+.++++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998743 22366788999999999999999999999998654444 23566777778888899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 678 MREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 678 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
+.+.+++ +...-..++++....|+++.|++.++.+.+.+|..-..+...|..+|...|+.++....+.++.+ ..++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~--~~~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME--TNTGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--ccCCc
Confidence 9998876 56666789999999999999999999999999998899999999999999999999999999999 77777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~ 824 (846)
..-..+...-....-.+.|...+.+-+. -+|+...+..++.....+.+.-.+++..-.+..+...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 6666677664443334555555444443 4788888888887776666554466656556665443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-09 Score=111.56 Aligned_cols=421 Identities=14% Similarity=0.067 Sum_probs=272.1
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HH
Q 003122 403 LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVS-IC 481 (846)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~ 481 (846)
+..|...|..|.-+....|+++.+.+.|++.... .......|+.+...|...|.-..|..++++.....-.|+..+ +.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4457777888888888888888888888877643 233556778888888888888888888887765432243333 33
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHhC--C--CccCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCC
Q 003122 482 TLLAACG-RCGRKVNIDAVLLAAEMR--D--IKLNTVAYNSAIGSYMNV-----------GEYEKAIALYKCMKKRKVMP 545 (846)
Q Consensus 482 ~ll~~~~-~~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~p 545 (846)
.....|. +.+..+++...-..+... + -......|..+.-+|... ....+++..+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 3333333 345566665555555441 1 112333444444444321 124567778888877542 2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
|......+.--|+..++.+.|.....+.++.+-..+...|..|+-.+...+++.+|+.+.+..... ...|......-++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhh
Confidence 333333344456778889999999999998866788889999999999999999999998887753 1122222222223
Q ss_pred HHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHH--HHHH----HHHhcCChhHHHHHHHHHH--------HCC-------
Q 003122 626 AYNTAEDWEKACALFLEMETN--NIEPDSIACS--ALMR----AFNKGGQPSKVLLVAEFMR--------EQD------- 682 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~--~l~~----~~~~~g~~~~A~~~~~~~~--------~~~------- 682 (846)
.-..-++.++|+.....+... ...+-..+.. .+.+ .-...++..+|......+. ..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 333356666666555444420 0000000000 0000 0000111222211111111 011
Q ss_pred ----CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003122 683 ----ITFS------DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG 752 (846)
Q Consensus 683 ----~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 752 (846)
+.|+ ...|...+..+.+.+..++|...+.++....|. ....|+..+..+...|.+++|.+.|..++.
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-- 712 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALA-- 712 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--
Confidence 1222 234556777888899999999999988877776 778888999999999999999999999999
Q ss_pred CCcC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCC-CHHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCC
Q 003122 753 AEAN-FNTYSILLKNLLAAGNWRKYIE--VLQWMEDAGIQP-SYGMFRDIVSFAQTRGGAEYAAIIQERIESLRMKSGDP 828 (846)
Q Consensus 753 ~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~~~ 828 (846)
++|| +.+...++.+|.+.|+..-|.. ++..+.+ +.| ++..|..++..+...|+.++|.+.+....+|.+-....
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 9996 5599999999999998888887 8888887 445 56689999999999999999999999999998766544
Q ss_pred CCC
Q 003122 829 SFD 831 (846)
Q Consensus 829 ~~~ 831 (846)
.+.
T Consensus 791 pFs 793 (799)
T KOG4162|consen 791 PFS 793 (799)
T ss_pred ccc
Confidence 443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-10 Score=121.27 Aligned_cols=510 Identities=14% Similarity=0.071 Sum_probs=304.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH---HHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH
Q 003122 242 STGNWREALKVCKKMTENGVGPDLVTHNIVLSA---YKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDK 318 (846)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 318 (846)
..+..++++.-+......+...+..++..+..+ |...++.+++ ++-........|....+.+++...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm-------- 308 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM-------- 308 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH--------
Confidence 445667777777777766666666666665543 3444555555 222222221222211111111100
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 319 AIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEI 398 (846)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (846)
-.+.++... .+.-|...|..+.-+....|+++.+.+.|++....- --....|..+...|...|.-..|..++++.
T Consensus 309 --~~~~k~r~~--~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~ 383 (799)
T KOG4162|consen 309 --LLLRKLRLK--KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRES 383 (799)
T ss_pred --HHHHHHHHh--hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 011112111 111366677777777777788888888888776532 224456777777777788877788877776
Q ss_pred HHCCCCCC-HhhHHHHHHHHH-hcCChHHHHHHHHHHHHC--CC--CcCHHHHHHHHHHHHh-----------CCCHHHH
Q 003122 399 KKNGLCPD-IVSYTSLLNAYG-RSQQPVKAREVFNMMRIN--NL--KPNLVSYSALIDAYGS-----------NGLLAEA 461 (846)
Q Consensus 399 ~~~g~~p~-~~~~~~ll~~~~-~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~li~~~~~-----------~g~~~~A 461 (846)
....-.|+ ...+-..-..|. +-+.++++++.-.+.... +. ......|..+.-+|.. .....++
T Consensus 384 ~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 384 LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 55432233 333333333333 335666666665555541 10 1123344444444322 1234678
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003122 462 VEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR 541 (846)
Q Consensus 462 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 541 (846)
++.+++..+.+ +.|......+.--|+..++++.|.....+....+...+...|..+.-.+...+++.+|+.+.+...+.
T Consensus 464 lqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 88888887764 33444444455566777888888888888887766778888888888888888899998888877654
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C-HH
Q 003122 542 KVMPD-SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSP-D-VI 618 (846)
Q Consensus 542 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~ 618 (846)
.|+ ......-+..-...++.++|......++..- . +.. .....++-....+....+.-.--.| + +.
T Consensus 543 --~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w-e-~~~-------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 543 --FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW-E-AEY-------GVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred --hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH-H-hhh-------hHhhhhhhhhhhhhhcccccCcccccccch
Confidence 222 1111122222234677788877777766421 0 000 0111111222233333322110011 1 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIE--PD------SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIF 690 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (846)
++..+...... +.+.+..-.. +...... |+ ...|......+.+.++.++|...+.++....+- ....|
T Consensus 612 ~sr~ls~l~a~--~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~ 687 (799)
T KOG4162|consen 612 TSRYLSSLVAS--QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVY 687 (799)
T ss_pred hhHHHHHHHHh--hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHH
Confidence 33333222221 1111110000 1111112 22 235667777888999999999888888876543 67788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCc-CHHHHHHHHHHH
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMK--LFFKIVSSGAEA-NFNTYSILLKNL 767 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~ 767 (846)
+..+..+...|++++|.+.|..+...+|. ++.+...++.++.+.|+-.-|.. ++..+++ ++| +...|+.|+..+
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVF 764 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHH
Confidence 88889999999999999999999988888 77888999999999996666666 9999999 999 677999999999
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003122 768 LAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 768 ~~~g~~~~A~~~~~~~~~ 785 (846)
.+.|+.++|.+.|+.+.+
T Consensus 765 k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHccchHHHHHHHHHHHh
Confidence 999999999999999876
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-12 Score=122.16 Aligned_cols=270 Identities=13% Similarity=0.054 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 513 VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAY 592 (846)
Q Consensus 513 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 592 (846)
..|..-+.+-.+.|+.+.+-.++.+.-+.--.++...+-.........|+++.|..-++++.+.+ +-+..+.....++|
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y 197 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHH
Confidence 33444445555566666666666666554223333344445555666667777777777666654 45556666667777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 593 SKQGLIAEAESMFNMMKMSGCSPDV-------ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKG 665 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 665 (846)
.+.|++.....++.++.+.|.-.|. .+|+.+++-....+..+.-...|++.... .+-++..-.+++.-+...
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHc
Confidence 7777777777777777766544442 45666666666655555555666666543 445566677788888899
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 003122 666 GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 666 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 745 (846)
|+.++|.++.++..+.+.++. .+....+..-++...=++.+++.....|. ++..+.+|+..|.+++.|.+|...|
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred CChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999998776544 22223345667777777777777777776 6789999999999999999999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 746 FKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 746 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
+.+++ ..|+...|..+++++.+.|+..+|.+.+++....-.+|+
T Consensus 352 eaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 352 EAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 99999 999999999999999999999999999998875434443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-11 Score=115.44 Aligned_cols=290 Identities=16% Similarity=0.139 Sum_probs=219.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 003122 173 HNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPS---RSTYNNLINACGSTGNWREA 249 (846)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~A 249 (846)
.++.++|.++|-+|.+.. +-+..+.-+|.+.|-+.|..|.|+.+.+.+.++--.+. ..+...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467899999999998732 34456667788899999999999999999887522111 12445567788899999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 250 LKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTT----THNIVIYCLVKLGQYDKAIDLFHS 325 (846)
Q Consensus 250 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~ 325 (846)
+++|..+.+.|.- -......|+..|-...++++|+.+-+++.+.+..+..+ .|.-+...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999876432 45667788999999999999999999888776554432 455666666678899999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 326 MREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCP 405 (846)
Q Consensus 326 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 405 (846)
..+.++. .+.+--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+.. +
T Consensus 206 Alqa~~~---cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 206 ALQADKK---CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHhhCcc---ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 9987766 5556667788899999999999999999987533334467888999999999999999999988753 3
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHC
Q 003122 406 DIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGS---NGLLAEAVEVFREMEQD 471 (846)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 471 (846)
....-..+...-....-.+.|...+.+-... +|+...+..+|+.... .|...+.+.+++.|+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4444455555555556667777766665555 7899999999987655 34567777788888754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-10 Score=106.17 Aligned_cols=457 Identities=12% Similarity=0.108 Sum_probs=210.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003122 131 IKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ 210 (846)
Q Consensus 131 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 210 (846)
+..+....++..|+.+++.....+. .....+---+..++.+.|++++|...|.-+.+. -.++...+..|..++.-.|+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHH
Confidence 5556666777777777776654331 111123333556666667777777766665542 24555666666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003122 211 WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFEL 290 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 290 (846)
+.+|..+-.... .+...-..|.....+.|+-++-..+...+.+. ..---+|.+.....-.+++|++++..
T Consensus 107 Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 666666554432 13333344444445556555555544444331 11112222222222334555555555
Q ss_pred HHhCCCCCChHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003122 291 MKGTNIRPDTTTHNI-VIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLK 369 (846)
Q Consensus 291 m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 369 (846)
++.. .|+-...|. +.-+|.+..-++-+.+++.-.+..-++ +..+.|..+....
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd---StiA~NLkacn~f--------------------- 230 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD---STIAKNLKACNLF--------------------- 230 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC---cHHHHHHHHHHHh---------------------
Confidence 5443 123223322 223344444444444444444433222 2333333332222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCcCHHH
Q 003122 370 PNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRS-----QQPVKAREVFNMMRINNLKPNLVS 444 (846)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~ 444 (846)
+.=.-..|+.-.+++.+++-.. | ..+.-.++. .+-+.|++++-.+.+. -|..
T Consensus 231 --------------Rl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA-- 287 (557)
T KOG3785|consen 231 --------------RLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA-- 287 (557)
T ss_pred --------------hhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--
Confidence 2211122222223332221100 0 011111111 2224455555444432 2221
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCccCHH-HHHHH
Q 003122 445 YSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAA-----CGRCGRKVNIDAVLLAAEMRDIKLNTV-AYNSA 518 (846)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l 518 (846)
-..|+--|.+.+++++|..+.+++.- ..|-......+..+ ........-|...|+.+-..+...|+. ---++
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 12234445666667776666655432 12222222222111 111222333444444443333322222 12334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 519 IGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI 598 (846)
Q Consensus 519 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 598 (846)
...+.-..++++.+..++.+..--...|...+ .+..+.+..|++.+|+++|-.+....++.+..-...|..+|.+++.+
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc
Confidence 44444555666666666665554323333333 35667777777777777776665544443333344556677777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003122 599 AEAESMFNMMKMSGCSPDVITYTA-MLHAYNTAEDWEKACALFLEMETNNIEPDSIACS 656 (846)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 656 (846)
+-|+.++-++.. +.+..+... +.+.|.+.+.+--|-+.|+.+.. ..|++.-|.
T Consensus 445 ~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 445 QLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred hHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 777665544432 223333333 33445566666666677776665 455555553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-10 Score=108.82 Aligned_cols=275 Identities=11% Similarity=0.010 Sum_probs=203.0
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 003122 507 DIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVT-YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVY 585 (846)
Q Consensus 507 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 585 (846)
-++.|+.....+.+.+...|+.++|+..|++..-. .|+..+ .....-.+.+.|+++.-..+...+.... +-....|
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 34557777888888888888888888888887755 343322 2222333456778887777777766532 2233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 003122 586 SSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIE-PDSIACSALMRAFNK 664 (846)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~ 664 (846)
-.-+......+++..|+.+-++.++.+ +-+...|-.-+..+...|+.++|.-.|+.++. +. -+...|..|+.+|..
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHh
Confidence 333444556778888888888888753 22456666666778888999999999998887 44 457789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDITFSDSIFFEMV-LAC-SLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
.|++.||....+.....-+. +..++..++ .++ .....-++|..++++.....|. -..+-+.++..+...|+.+.++
T Consensus 381 ~~~~kEA~~~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hchHHHHHHHHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHH
Confidence 99999998887777763222 455555443 333 2334468899999999988888 5567788999999999999999
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 743 KLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 743 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.++++.+. ..||....+.|+..+...+.+++|.+.|..++. +.|...
T Consensus 459 ~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 459 KLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 99999999 899999999999999999999999999999986 556544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-09 Score=115.15 Aligned_cols=591 Identities=13% Similarity=-0.004 Sum_probs=321.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003122 211 WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFEL 290 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 290 (846)
...|+..|-+..+... .-...|..|...|+..-+...|.+.|++.-+.+.. +...+..+...|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5555555555555421 12345666666666666666677777766655432 555666666777777777776666332
Q ss_pred HHhCCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003122 291 MKGTNI-RPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLK 369 (846)
Q Consensus 291 m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 369 (846)
.-+... ..-...|--+.-.|.+.++...|+.-|+......|. |...|..+..+|...|++..|.++|.++... .
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk---D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK---DYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch---hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 222110 000112222344455667777777777766655554 6667777777777777777777777666553 3
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHhcCChHHHHHHHH-------HHHH
Q 003122 370 PNIV-SYNALMAAYASHGMSKEALSVFNEIKKN------GLCPDIVSYTSLLNAYGRSQQPVKAREVFN-------MMRI 435 (846)
Q Consensus 370 p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~-------~m~~ 435 (846)
|+.. .-.......+..|.+.+|+..+...... +...-..++..+...+...|-..+|...++ -...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4332 1122233345566777776666655431 011112222222222222222222222222 2222
Q ss_pred CCCCcCHHHHHHHHHHH-----------------------HhCCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 436 NNLKPNLVSYSALIDAY-----------------------GSNGLL---A---EAVEVFREMEQDGIEPNIVSICTLLAA 486 (846)
Q Consensus 436 ~~~~~~~~~~~~li~~~-----------------------~~~g~~---~---~A~~~~~~~~~~g~~~~~~~~~~ll~~ 486 (846)
+....+...|-.+.+++ ...+.. + -+.+.+-.-+. ...+..++..|...
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHH
Confidence 21112222222222221 111111 1 11111111111 11123344444333
Q ss_pred HHh----cC----CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003122 487 CGR----CG----RKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCC 558 (846)
Q Consensus 487 ~~~----~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 558 (846)
|.+ +| +...|...+...+... ..+...||.|.-. ...|.+.-|...|-+-.... +....+|..+.-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEE
Confidence 322 11 2235555555555432 2366777777655 56677777777776665542 346667888888888
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--H--cCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMK--M--SGCSPDVITYTAMLHAYNTAEDWE 634 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~--~~~~p~~~~~~~l~~~~~~~g~~~ 634 (846)
+..+++.|...|...+... |.+...|..........|+.-++..+|..-- . .|--++..-|..........|+.+
T Consensus 862 ~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 8889999999999888764 5566777666666667888888888887622 2 233455555555555566677766
Q ss_pred HHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---C--CCCCCHHHHHHHHHHHHhc
Q 003122 635 KACALFLEMET---------NNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMRE---Q--DITFSDSIFFEMVLACSLL 700 (846)
Q Consensus 635 ~A~~~~~~~~~---------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~~~~~~~~~~~l~~~~~~~ 700 (846)
+-+...+++-. .+.+.+..+|...+....+.+.+.+|.+...+.+. . ...-+...-...++.+...
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lsl 1020 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSL 1020 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 65544444321 12344467888888888888888888887777653 1 1111222334566778888
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---CHH-HHHHHHHHHHhcCCHHHH
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA---NFN-TYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~-~~~~l~~~~~~~g~~~~A 776 (846)
|.++.|.........+...... ...-+..-.|+++++.+.|++++. +.- |.+ ....++.....+|.-+.|
T Consensus 1021 gefe~A~~a~~~~~~evdEdi~----gt~l~lFfkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A 1094 (1238)
T KOG1127|consen 1021 GEFESAKKASWKEWMEVDEDIR----GTDLTLFFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDA 1094 (1238)
T ss_pred cchhhHhhhhcccchhHHHHHh----hhhHHHHHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHH
Confidence 8888887766654332222111 111122457899999999999987 433 322 344455556677788888
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 003122 777 IEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESL 821 (846)
Q Consensus 777 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l 821 (846)
...+-+.... -+++......+....--+.+.+....+.++++.+
T Consensus 1095 ~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl 1138 (1238)
T KOG1127|consen 1095 QFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKL 1138 (1238)
T ss_pred HHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 8877666653 2345555555555444455555556666666554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-09 Score=110.22 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=77.4
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 277 NGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENC 356 (846)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 356 (846)
..+++...++..+.+++. .+-...|.....-.++..|+.++|.+..+.....++. +.++|..+.-.+-...++++|
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHH
Confidence 345555555555555542 2333444444444455556666666655555543332 455555555555555556666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003122 357 KGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN 436 (846)
Q Consensus 357 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 436 (846)
++.|..++..+ +-|...|.-+.-.-.+.++++.......++.+.. +.....|..++.++.-.|+...|..+++...+.
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666555543 2233344444444445555555555555444421 112334555555555555555555555555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-12 Score=140.92 Aligned_cols=182 Identities=12% Similarity=0.017 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLV 674 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 674 (846)
+++++|...++++++.+ +.+...+..+...+...|++++|...|+++++ +.|+ ...+..+..++...|++++|+..
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666666666666642 22356666666666666777777777777666 3343 44566666666677777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 675 AEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 754 (846)
++++++.++. +...+..++.++...|++++|+..++++....+...+..+..++.++...|++++|.+.+.++.. ..
T Consensus 395 ~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~ 471 (553)
T PRK12370 395 INECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QE 471 (553)
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--cc
Confidence 7777765544 22223333444555666777777766665443322455566667777777777777777777665 55
Q ss_pred cCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 755 ANFN-TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 755 p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
|+.. ....++..|...| ++|...++++.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 5433 4444455566666 366666666544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-12 Score=122.26 Aligned_cols=238 Identities=12% Similarity=0.046 Sum_probs=197.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
|-..-+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|..+|.+..+...|+.+|.+-++. ++-|+.....+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3333467888999999999999999998875 467778888999999999999999999998875 3445555667788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
.+...++.++|.++|+...+.. +.+..+...+...|.-.++++-|+.+|+++++.|+. +++.|+.++.+|...++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8888999999999999998842 334556667777888899999999999999999987 89999999999999999999
Q ss_pred HHHHHHhhccC--CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 706 TIDLIKQMEPS--FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 706 A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
++.-|+++... .|.....+|.+|+......||+..|.+.|+-++. .+|+. .+++.|+-.-.+.|+.++|..+++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999887533 3444578899999999999999999999999998 77854 4899998888999999999999998
Q ss_pred HHHCCCCCCH
Q 003122 783 MEDAGIQPSY 792 (846)
Q Consensus 783 ~~~~g~~p~~ 792 (846)
+.. +.|+.
T Consensus 455 A~s--~~P~m 462 (478)
T KOG1129|consen 455 AKS--VMPDM 462 (478)
T ss_pred hhh--hCccc
Confidence 865 55653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-09 Score=110.24 Aligned_cols=457 Identities=12% Similarity=0.150 Sum_probs=289.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHH
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKAL 285 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 285 (846)
...+++...+++.+.+++. .+-...+.....-.+...|+-++|......-...++. +.+.|..+.-.+....++++|+
T Consensus 18 yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 3567788888888888774 3445556665566667788888888888777776554 6677888877778888889999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 286 SYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLA 365 (846)
Q Consensus 286 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (846)
+.|......+ +.|...+.-+.-.-.+.|+++.....-....+..+. ....|..++.++.-.|++..|..++++..+
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS---QRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888765 446777777777777888888888888877776655 567788888888888999999988888876
Q ss_pred cC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003122 366 EG-LKPNIVSYNALM------AAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNL 438 (846)
Q Consensus 366 ~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 438 (846)
.. ..|+...|.... ....+.|.+++|.+.+..-... +.-....-..-...+.+.+++++|..++..+...
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 54 245555443332 2345677777777777655432 1112222334566778889999999999988877
Q ss_pred CcCHHHHHHHHH-HHHhCCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCccCHHHH
Q 003122 439 KPNLVSYSALID-AYGSNGLLAEAV-EVFREMEQDGIEPNIVSICTL-LAACGRCGRKVNIDAVLLAAEMRDIKLNTVAY 515 (846)
Q Consensus 439 ~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 515 (846)
.||...|..... ++.+-.+.-+++ .+|....+. .|-......+ +....-..-.+...+++......|+++ ++
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf 323 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VF 323 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hh
Confidence 466665555443 343333333344 555555443 1111111111 111111222334445555556666543 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh----hCC----------CCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 003122 516 NSAIGSYMNVGEYEKAIALYKCMK----KRK----------VMPDSV--TYTVLISSCCRLSRYSEALGFLDEMMDLKIP 579 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~~~~~~~----~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 579 (846)
..+...|-.-...+-..++...+. ..| -+|... ++..++..+-..|+++.|..+++.++..- |
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-P 402 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-P 402 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-c
Confidence 333333322222211111111111 111 144444 34567788889999999999999988752 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI------ 653 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------ 653 (846)
.-...|..-.+.+...|++++|..++++..+.+ .+|...-.--+.-..++++.++|.++.......|. +..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~m 479 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEM 479 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHh
Confidence 334667777888999999999999999998864 45555444556666788999999999888887664 221
Q ss_pred --HHHHH--HHHHHhcCChhHHHHHHHHHHH
Q 003122 654 --ACSAL--MRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 654 --~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
.|..+ +.+|.++|++..|+.-|..+..
T Consensus 480 qcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 480 QCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 22222 4467788888888766655543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=122.06 Aligned_cols=235 Identities=13% Similarity=0.090 Sum_probs=206.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 516 NSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQ 595 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 595 (846)
+.+..+|.+.|.+.+|.+.|+..++. .|-..||..|-..|.+..+...|+.++.+-++. +|.++.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56888999999999999999998887 677788999999999999999999999998886 466666667788899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVA 675 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (846)
++.++|.++|+...+.. +.++.....+...|.-.++.+-|+.+|+++++.|+. ++..|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999864 446777888888888899999999999999999864 6678888988999999999999999
Q ss_pred HHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 676 EFMREQD--ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 676 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
++++..- +.....+|+.++.+....|++.-|.+.|+-....++. ...++|+|+-.-.+.|++++|+.++..+.. .
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s--~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS--V 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--h
Confidence 9999743 3345678999999999999999999999999988887 778999999999999999999999999988 8
Q ss_pred CcCHH
Q 003122 754 EANFN 758 (846)
Q Consensus 754 ~p~~~ 758 (846)
.|+..
T Consensus 459 ~P~m~ 463 (478)
T KOG1129|consen 459 MPDMA 463 (478)
T ss_pred Ccccc
Confidence 88643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-10 Score=111.22 Aligned_cols=294 Identities=12% Similarity=0.093 Sum_probs=177.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 003122 349 VNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKARE 428 (846)
Q Consensus 349 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 428 (846)
..|++..|+++..+..+.+-.| ...|..-+.+--..|+.+.+-.++.+..+.--.++...+.+..+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3688888888888877765332 335555666677788888888888888775334455667777788888888888888
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003122 429 VFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDI 508 (846)
Q Consensus 429 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 508 (846)
-++++.+.+ +-+........++|.+.|++.+...++.++.+.|.-.+...-.
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~--------------------------- 226 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR--------------------------- 226 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH---------------------------
Confidence 888887765 5567778888888999999999999999998887655533210
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 509 KLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSV 588 (846)
Q Consensus 509 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 588 (846)
....+|+.+++-....+..+.-...++..... .+.+...-..++.-+...|+.++|.++..+..+.+..+... .
T Consensus 227 -le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~ 300 (400)
T COG3071 227 -LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----R 300 (400)
T ss_pred -HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----H
Confidence 01123333333333333333333333333221 12233344445555555666666666666665554444311 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003122 589 ISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQP 668 (846)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 668 (846)
.-.+.+-++...-++..++..+.. +.++..+.+|+..|.+.+.|.+|...|+..++ ..|+..+|+.+..++.+.|+.
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCCh
Confidence 112344455555555555544431 22345566666666666666666666665555 456666666666666666666
Q ss_pred hHHHHHHHHHHH
Q 003122 669 SKVLLVAEFMRE 680 (846)
Q Consensus 669 ~~A~~~~~~~~~ 680 (846)
.+|.+.+++.+.
T Consensus 378 ~~A~~~r~e~L~ 389 (400)
T COG3071 378 EEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHH
Confidence 666666665553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-08 Score=109.89 Aligned_cols=637 Identities=12% Similarity=0.012 Sum_probs=339.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003122 138 GAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNI 217 (846)
Q Consensus 138 g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 217 (846)
++...|+..|=...+.. +.-...|..|...|+...+...|...|+...+.. .-+...+......|++...++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 44677777776666544 3445689999999998889999999999988743 34577788899999999999999988
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 003122 218 FDDMLRAAV-APSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNI 296 (846)
Q Consensus 218 ~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 296 (846)
.-..-+... ..-...|..+.-.|...++...|+.-|+...+..+. |...|..+..+|...|++..|+++|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 433222211 011123334445567888999999999998887654 8889999999999999999999999988765
Q ss_pred CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------
Q 003122 297 RPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLP----DIVTFTSIIHLYSVNGQIENCKGVFNTMLA------ 365 (846)
Q Consensus 297 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------ 365 (846)
.|+ ...---..-..|..|.+.+|+..+..+........+ -..++-.+...+...|-...|...++..++
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 343 233333445567899999999998887754321000 122233333333334444444444444332
Q ss_pred -cCCCCCHHHHHHHHHHHHh---cC--CHH-HHHHH-HHHHHHCCC--------------------CCCHhhHHHHHHHH
Q 003122 366 -EGLKPNIVSYNALMAAYAS---HG--MSK-EALSV-FNEIKKNGL--------------------CPDIVSYTSLLNAY 417 (846)
Q Consensus 366 -~g~~p~~~~~~~li~~~~~---~g--~~~-~A~~~-~~~m~~~g~--------------------~p~~~~~~~ll~~~ 417 (846)
.....+...|-.+..++.- .. -+. .-..+ +.+....+. ..+..+|..|+..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 2111122222222221110 00 000 00000 011111111 11222333333333
Q ss_pred Hh-------c-CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 418 GR-------S-QQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGR 489 (846)
Q Consensus 418 ~~-------~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 489 (846)
.+ . .+...|...+.+.++.. .-+..+|+.|.-. ...|++.-|...|-+..... +....+|..+...+.+
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEe
Confidence 22 1 11234555555554432 2345556555433 44566666666666555542 3445566666666667
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHHHhcCCHhH
Q 003122 490 CGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMK----KRKVMPDSVTYTVLISSCCRLSRYSE 565 (846)
Q Consensus 490 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~ 565 (846)
..+++.|...|....... +.|...|-.........|+.-++..+|..-- ..|-.++..-|..........|+.++
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 777777777777666553 3355566555555556676666666665411 12223333333333333344555444
Q ss_pred HHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----HHHHHHHhcC
Q 003122 566 ALGFLDEMMD---------LKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS-GCSPDVITYT----AMLHAYNTAE 631 (846)
Q Consensus 566 A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g 631 (846)
-+...+++-. .+.+.+...|...+......+.+.+|.+...++... ...-+...|+ .+...++..|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 3333322211 134555666666666666666666666555543320 0012333333 3344455566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 003122 632 DWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ-DITFSD-SIFFEMVLACSLLRDWKTTIDL 709 (846)
Q Consensus 632 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 709 (846)
.++.|..-+..... ..+..+...-+. ..-.|+++++.+.|+++... +-.-+. .....++......+..+.|...
T Consensus 1022 efe~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~l 1097 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFL 1097 (1238)
T ss_pred chhhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHH
Confidence 66655443332211 111111111111 13357788888888888762 112122 2333444455666777777776
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 710 IKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNT---YSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+-+.....+. +......|..++.-..+-..-....++..+ +..+ ... -...--.|..+|+-.-....+++..-
T Consensus 1098 Lfe~~~ls~~-~~~sll~L~A~~ild~da~~ssaileel~k--l~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h 1174 (1238)
T KOG1127|consen 1098 LFEVKSLSKV-QASSLLPLPAVYILDADAHGSSAILEELEK--LLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVH 1174 (1238)
T ss_pred HHHHHHhCcc-chhhHHHHHHHHHHhhhhhhhHHHHHHHHH--hhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 6665544443 444454555554444333333333333332 1111 111 11222347778887777788888765
Q ss_pred CCCCCCHH
Q 003122 786 AGIQPSYG 793 (846)
Q Consensus 786 ~g~~p~~~ 793 (846)
..|...
T Consensus 1175 --~~P~~~ 1180 (1238)
T KOG1127|consen 1175 --SNPGDP 1180 (1238)
T ss_pred --cCCCCh
Confidence 455433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-08 Score=105.84 Aligned_cols=572 Identities=14% Similarity=0.160 Sum_probs=311.3
Q ss_pred cCCCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 003122 122 FARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYC-----ARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAE 196 (846)
Q Consensus 122 ~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (846)
|+..+...+..-|.+.|-+.+|++.|..+...+... .+++ .++ .|.-.-.++++.+.+..|...+++-|..
T Consensus 604 FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE---wLv-~yFg~lsve~s~eclkaml~~NirqNlQ 679 (1666)
T KOG0985|consen 604 FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE---WLV-NYFGSLSVEDSLECLKAMLSANIRQNLQ 679 (1666)
T ss_pred cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH---HHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhH
Confidence 444455667777778888888887776554332110 0111 122 2333456778888888888777777777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------
Q 003122 197 TYNALISAHGRAGQWRWAMNIFDDMLRA-----------AVAPSRSTYNNLINACGSTGNWREALKVCKKM--------- 256 (846)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--------- 256 (846)
+...+..-|...=-.+..+++|+..... ++.-|..+.--.|.+.|+.|.+.+.+++.++-
T Consensus 680 i~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvK 759 (1666)
T KOG0985|consen 680 IVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVK 759 (1666)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHH
Confidence 7777777777665666677777765442 23445555556778888888887777665332
Q ss_pred ---HHC---------------CCCCChHHHH------HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHH-------
Q 003122 257 ---TEN---------------GVGPDLVTHN------IVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNI------- 305 (846)
Q Consensus 257 ---~~~---------------g~~~~~~~~~------~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------- 305 (846)
++. |+.+|.+.|- ..|..|.+.=+....-.+...++...+. ....-+.
T Consensus 760 NfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~-E~~ik~Li~~v~gq 838 (1666)
T KOG0985|consen 760 NFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS-EDFIKNLILSVRGQ 838 (1666)
T ss_pred HHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc-HHHHHHHHHHHhcc
Confidence 111 1222222221 1122332222222222222222222111 1111111
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHH-HH---HHHH-----HH-------
Q 003122 306 -----VIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENC-KG---VFNT-----ML------- 364 (846)
Q Consensus 306 -----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~---~~~~-----m~------- 364 (846)
|+.-.-+.+++.-....++.....|.. |..++|+|...|...++-.+- ++ .++. ..
T Consensus 839 ~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~---d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~l 915 (1666)
T KOG0985|consen 839 FPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ---DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHL 915 (1666)
T ss_pred CChHHHHHHHHhhhhHHHHHHHHHHHHhccCc---chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCce
Confidence 122222444555555566666666654 778888888776654332111 00 0000 00
Q ss_pred -----HcCC--------CCCHHHHHHHHHHHHhcCCHHH---H--------HHHHHHHHHCCCC--CCHhhHHHHHHHHH
Q 003122 365 -----AEGL--------KPNIVSYNALMAAYASHGMSKE---A--------LSVFNEIKKNGLC--PDIVSYTSLLNAYG 418 (846)
Q Consensus 365 -----~~g~--------~p~~~~~~~li~~~~~~g~~~~---A--------~~~~~~m~~~g~~--p~~~~~~~ll~~~~ 418 (846)
++|. --....|....+.+.+..+.+- . ..+.++..+.+++ .|+...+.-+.++.
T Consensus 916 A~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM 995 (1666)
T KOG0985|consen 916 ACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFM 995 (1666)
T ss_pred EEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence 0110 0001123333333333333221 1 2344555544332 34455566677777
Q ss_pred hcCChHHHHHHHHHHHHCCC--CcCHHHHHHHH---------------------------HHHHhCCCHHHHHHHHHHHH
Q 003122 419 RSQQPVKAREVFNMMRINNL--KPNLVSYSALI---------------------------DAYGSNGLLAEAVEVFREME 469 (846)
Q Consensus 419 ~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li---------------------------~~~~~~g~~~~A~~~~~~~~ 469 (846)
..+-+.+-+++++++.-... .-+...-|.|| .....++-+++|+.+|++.-
T Consensus 996 tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 996 TADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc
Confidence 77777888888877764321 11111122222 22334455566666665532
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 003122 470 QDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVT 549 (846)
Q Consensus 470 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 549 (846)
.+......|+.- -+..+.|.+.-+... .+..|..+..+-.+.|.+.+|++.|-+. .|...
T Consensus 1076 -----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~ 1135 (1666)
T KOG0985|consen 1076 -----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSN 1135 (1666)
T ss_pred -----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHH
Confidence 233333333332 233444444333322 5678899999999999999988877543 36667
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
|..+++...+.|.+++-..++..+.+....|... +.|+-+|++.+++.+-++++. .||......+++-|..
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhh
Confidence 8899999999999999999988887765555544 467788999888877655432 4787777888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDL 709 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 709 (846)
.|.++.|.-+|.... .|..|...+...|.+..|....+++- +..+|-.+..+|...+.+.-|.
T Consensus 1207 ~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-- 1269 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQ-- 1269 (1666)
T ss_pred hhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHH--
Confidence 888888877776554 36677777777788777776555443 3445555555555554443332
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 710 IKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+-..+-.+...-+..|+..|...|-+++-+.+++..+.
T Consensus 1270 ---iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1270 ---ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred ---hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 11111122223344555555556666665555555543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-08 Score=107.08 Aligned_cols=349 Identities=15% Similarity=0.144 Sum_probs=176.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 003122 241 GSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAI 320 (846)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 320 (846)
...|.+++|+.+|.+..+. ..|=..|-..|.+++|.++-+.-..-. =..||.....-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 3456666666666665542 233344555666666666655432211 1234444555555566666666
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 321 DLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKK 400 (846)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (846)
+.|++... +--..+..|. .++.....+.+++. |...|.-....+...|+.+.|+.+|.....
T Consensus 879 eyyEK~~~------hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 879 EYYEKAGV------HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHhcCC------hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 66665421 1111111111 12222222333322 334444445555556777777776665543
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003122 401 NGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSI 480 (846)
Q Consensus 401 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 480 (846)
|-++++..|-.|+.++|-++-++- -|......|.+.|-..|++.+|+..|.++.. +
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------f 996 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------F 996 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------H
Confidence 455666666667777666655432 2444555566666667777777766665542 2
Q ss_pred HHHHHHHHh---------------cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHH-H-------H
Q 003122 481 CTLLAACGR---------------CGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALY-K-------C 537 (846)
Q Consensus 481 ~~ll~~~~~---------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~-------~ 537 (846)
...|..|-. ..+.-.|.+.|++.-- -.......|-+.|.+.+|+++- + +
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 222222111 1122222223322210 0122234466677776666542 1 1
Q ss_pred HhhC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC
Q 003122 538 MKKR--KVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKM-SGCS 614 (846)
Q Consensus 538 ~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 614 (846)
++.. ....|....+.-.+.++...++++|..++-...+. ..-+. +|+..+..--.++-+.|.- ++-.
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCcCCC
Confidence 1222 22346666777777777888888888887766542 11222 3444444444444455543 2123
Q ss_pred CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 003122 615 PDV----ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSK 670 (846)
Q Consensus 615 p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 670 (846)
|+. .....+...|.++|.+..|-+-|.++-+. ..-++++.+.|+.++
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 442 45567777888888888888777665431 123455666666554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-11 Score=134.82 Aligned_cols=249 Identities=12% Similarity=0.014 Sum_probs=186.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCC---------RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGL 597 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 597 (846)
.+++|+.+|++.++.. +.+...|..+..++. ..+++++|...++++++.+ |.+..++..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 4577888888887763 223445555554443 2345889999999999875 6678888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHH
Q 003122 598 IAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS-IACSALMRAFNKGGQPSKVLLVAE 676 (846)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 676 (846)
+++|...|+++++.+ +.+...+..++..+...|++++|+..++++++ +.|+. ..+..++..+...|++++|+..++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999863 33477888999999999999999999999998 45653 233444556777899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCc
Q 003122 677 FMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS-GAEA 755 (846)
Q Consensus 677 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p 755 (846)
++++..++-+...+..++.++...|++++|...++++....|. ....++.++..|...| ++|...++++++. ...|
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 9987643335666788889999999999999999998877766 6667778888888888 4888888887662 1223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 756 NFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 756 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
....+ +...|.-.|+.+.+..+ +++.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22222 55557777887777766 777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-09 Score=104.30 Aligned_cols=295 Identities=11% Similarity=0.019 Sum_probs=224.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 522 YMNVGEYEKAIALYKCMKKRK-VMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAE 600 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 600 (846)
++-.++...|..++-.+.... .+.|......+...+...|+.++|+..|++....+ +-+........-.+.+.|++++
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhh
Confidence 344555555555555444432 34466678889999999999999999999988753 2333333344445678899988
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003122 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (846)
-..+-..+.... .-....|..-+......++++.|+.+-++.++ +.|+ ...+..-+..+...|+.++|.-.|+.++
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 888877776531 22344555555566677899999999999998 4444 4567667778899999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHH-HHHHh-cCCHHHHHHHHHHHHhcCCCcCH
Q 003122 680 EQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLL-HLLGK-SGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 680 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
...|- +..+|..++..|...|++.+|..+-.......+. +..++..++ .++.. ..--++|.+.+++.+. ++|+.
T Consensus 362 ~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y 437 (564)
T KOG1174|consen 362 MLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIY 437 (564)
T ss_pred hcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCcc
Confidence 86644 7889999999999999999998777665544444 445554553 34433 2356999999999999 99975
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhccC
Q 003122 758 N-TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLRMKSG 826 (846)
Q Consensus 758 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~ 826 (846)
. +.+.++..+...|++++++.++++.+. ..||....+.+++++...+...+|...|.+...+.++.+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 5 788888899999999999999999986 689999999999999999999999999987777665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-07 Score=98.56 Aligned_cols=541 Identities=16% Similarity=0.195 Sum_probs=297.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 168 RLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWR 247 (846)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 247 (846)
.-+.+.|+++.|..-|-+... ...-|.+-....+|.+|+.+++.+.... .-..-|..+.+.|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHH
Confidence 334455666666665554432 1223455566778888888888887653 23345667778888888888
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 248 EALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMR 327 (846)
Q Consensus 248 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 327 (846)
.|.++|.+.- .++--|..|.+.|++++|.++-++... .......|..-..-+-+.|++.+|.+++-.+.
T Consensus 783 ~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 783 IAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 8888885432 345567888888888888888777653 24455667677777778888888888876553
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 328 EKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNI--VSYNALMAAYASHGMSKEALSVFNEIKKNGLCP 405 (846)
Q Consensus 328 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 405 (846)
. |+ .-|.+|-+.|..+..+++.++-- |+. .|...+..-|...|++..|..-|-+..+
T Consensus 852 ~------p~-----~aiqmydk~~~~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----- 910 (1636)
T KOG3616|consen 852 E------PD-----KAIQMYDKHGLDDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----- 910 (1636)
T ss_pred C------ch-----HHHHHHHhhCcchHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-----
Confidence 2 33 24567888888888887766532 222 2555666777778888888877655432
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHH--------------HCCCCcCHHH------HHHHHHHHHhCCCHHHHHHHH
Q 003122 406 DIVSYTSLLNAYGRSQQPVKAREVFNMMR--------------INNLKPNLVS------YSALIDAYGSNGLLAEAVEVF 465 (846)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--------------~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~ 465 (846)
|.+-+++|-..+-+++|.++-..-- ..|-..-+.. ...-|+..+.++.++-|+++-
T Consensus 911 ----~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdla 986 (1636)
T KOG3616|consen 911 ----FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLA 986 (1636)
T ss_pred ----HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHH
Confidence 4556677777777777765543210 0010000111 112234455666677777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHH-----HHHHHHhcC-CHHHHHHHHHHHh
Q 003122 466 REMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNS-----AIGSYMNVG-EYEKAIALYKCMK 539 (846)
Q Consensus 466 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g-~~~~A~~~~~~~~ 539 (846)
+-..+.. .+. +...+...+...|++++|.+.+-+.++.+.. | .+|-. .=.-+.+.| ++++|...|-.-.
T Consensus 987 ri~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaiklnty-n-itwcqavpsrfd~e~ir~gnkpe~av~mfi~dn 1061 (1636)
T KOG3616|consen 987 RIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNTY-N-ITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDN 1061 (1636)
T ss_pred HHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcccc-c-chhhhcccchhhHHHHHcCCChHHHHHHhhhcc
Confidence 6555532 222 2334455567789999998888777665311 1 11111 011223444 4555555442110
Q ss_pred --------hCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 003122 540 --------KRKVMPDSV--TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMM- 608 (846)
Q Consensus 540 --------~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 608 (846)
....-||.. .+.--.++-...|++.+|..++-.+. +|+.. ++-|...+-+.+|+++.+..
T Consensus 1062 dwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i~-----l~yf~e~~lw~dalri~kdyl 1132 (1636)
T KOG3616|consen 1062 DWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDIA-----LNYFIEAELWPDALRIAKDYL 1132 (1636)
T ss_pred cHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC----CCchH-----HHHHHHhccChHHHHHHHhhC
Confidence 000112211 12223333445566666766654433 34432 23344555555555554321
Q ss_pred ---------------HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------CCCH
Q 003122 609 ---------------KMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNI---------------------EPDS 652 (846)
Q Consensus 609 ---------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---------------------~p~~ 652 (846)
.+.| ...+..+..-..-..+.|+|.+|...+-+.-.... .|+.
T Consensus 1133 p~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~ 1211 (1636)
T KOG3616|consen 1133 PHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDE 1211 (1636)
T ss_pred hhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCcc
Confidence 2222 12344455555556677888888777666532111 1110
Q ss_pred --HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc-----------
Q 003122 653 --IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV----------- 719 (846)
Q Consensus 653 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------- 719 (846)
....+.+.++...|.-+.|.+++-.. ......++++++..+|.+|.++.+.+.+....
T Consensus 1212 nme~i~aa~~al~~~~~~e~aael~l~f---------~~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lk 1282 (1636)
T KOG3616|consen 1212 NMEVIGAAGGALDEAGCHEAAAELLLLF---------DLSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLK 1282 (1636)
T ss_pred chhhHHhcchhhhcccccHHHHHHHHHh---------hhHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHh
Confidence 11111222222333333333322111 01123456778888888888777665322111
Q ss_pred --------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 003122 720 --------VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKN-LLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 720 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~ 783 (846)
+++.+ .+-+..+...++|++|+....+ .+..|=..-|..+..+ +...|....|+.++.+-
T Consensus 1283 negkl~eli~vdv-iaaidl~ien~qwdk~idtak~---qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ 1351 (1636)
T KOG3616|consen 1283 NEGKLDELIDVDV-IAAIDLMIENDQWDKAIDTAKK---QNYKPILDKYVALYAAHLIHEGDLAQALALLEQH 1351 (1636)
T ss_pred ccCccccccchhH-HHHHHHHHhcccHHHHHHHHHh---cccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 11111 2445677788888888766543 3355655566655544 77888888888877653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.9e-07 Score=96.65 Aligned_cols=589 Identities=14% Similarity=0.148 Sum_probs=284.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNA----LISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLIN 238 (846)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 238 (846)
+..+.+.|.+.|-+..|++.|.++.+ ++..++.-+. -+-.|.-.-.++++++.+..|+..++..|..+..-+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~D--IKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYD--IKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHH--HHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 67788889999999999988877665 1122111111 01233444467889999999998888888877777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----------CCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHH------------hCC
Q 003122 239 ACGSTGNWREALKVCKKMTEN-----------GVGPDLVTHNIVLSAYKNGAQYSKALSYFELMK------------GTN 295 (846)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~-----------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~------------~~~ 295 (846)
-|+..=-.+..+++|+..... ++.-|....-..|.+.|+.|++.+.+++.++-. +..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 777665566667777666432 234455666677888888898888887766421 111
Q ss_pred CC---C-----ChHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC-----------H-HHHH------------H
Q 003122 296 IR---P-----DTTT-HNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPD-----------I-VTFT------------S 342 (846)
Q Consensus 296 ~~---~-----~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~-~~~~------------~ 342 (846)
.. | |..- ..-|+. |.-.++..+-++++-+-. ++.-.|- . ..-+ -
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvl-YLyrnn~~kyIE~yVQkv--Nps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~de 843 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVL-YLYRNNLQKYIEIYVQKV--NPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDE 843 (1666)
T ss_pred ccccCceEEEecccccHHHHHH-HHHHhhHHHHHHHHHhhc--CCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHH
Confidence 00 0 0000 011111 111122222222222111 1111110 0 1111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-H---HHHH------HHH-----------C
Q 003122 343 IIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEAL-S---VFNE------IKK-----------N 401 (846)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~---~~~~------m~~-----------~ 401 (846)
|+.-.-+.++..--...++..+..|. .|..++|+|...|...++-.+-. + .|+. ..+ .
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 11222334444555555566666663 36666777776666554322210 0 0000 000 0
Q ss_pred CC--------CCCHhhHHHHHHHHHhcCChHHHHHH-----------HHHHHHCCC--CcCHHHHHHHHHHHHhCCCHHH
Q 003122 402 GL--------CPDIVSYTSLLNAYGRSQQPVKAREV-----------FNMMRINNL--KPNLVSYSALIDAYGSNGLLAE 460 (846)
Q Consensus 402 g~--------~p~~~~~~~ll~~~~~~g~~~~A~~~-----------~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~ 460 (846)
|. .-....|..+.+-+.+..+.+--.++ +++....++ ..|......-+.++...+-..+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 10 00111222233333333333222222 122222111 1122333334455555555555
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003122 461 AVEVFREMEQDGIE-PNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMK 539 (846)
Q Consensus 461 A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 539 (846)
-++++++..-..-. ........|+-.-+-.-+.....+..+.+..-+. -.+......++-+++|..+|+..-
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-------~~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-------PDIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-------hhHHHHHhhhhHHHHHHHHHHHhc
Confidence 55555555432100 0111111111111111222222222222222110 011222334455666666665542
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003122 540 KRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVIT 619 (846)
Q Consensus 540 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 619 (846)
. +......|+. ..+..+.|.++-++. ....+|+.+..+-.+.|.+.+|++-|-+. .|+..
T Consensus 1076 ~-----n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~ 1135 (1666)
T KOG0985|consen 1076 M-----NVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSN 1135 (1666)
T ss_pred c-----cHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHH
Confidence 1 2333333332 234445554444432 23456777777777777777776665432 25666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
|...++...+.|.|++-.+++..+.+..-+|... ..|+-+|.+.++..+-.+++. .|+....-.+++-|..
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhh
Confidence 7777777777777777777777666654444433 356666777776655444331 2345555556666666
Q ss_pred cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------cCCCc--
Q 003122 700 LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS----------------------SGAEA-- 755 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------~g~~p-- 755 (846)
.|.++.|.-+|.... -|..|+..+...|++..|....+++-. .|+.-
T Consensus 1207 ~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iiv 1277 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIV 1277 (1666)
T ss_pred hhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEE
Confidence 666666655554322 244555555555555555555444322 12221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHh
Q 003122 756 NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQT 804 (846)
Q Consensus 756 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 804 (846)
...-...|+.-|...|.++|-+.+++..+ |++. ..+++..++-.|.+
T Consensus 1278 hadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1278 HADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred ehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh
Confidence 22234556666777788888877777654 3332 34455555555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.2e-11 Score=116.93 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 582 NQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA 661 (846)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 661 (846)
...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555666666666666666666665532 2235555666666666666666666666666532 2234455556666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
+...|++++|+..++++++.... .....+..++.++...|++++|...++++....|. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666653211 12334445555555666666666666555554444 34455566666666666666
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 741 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
|...++++++ ..| +...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQ--TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666665 334 33344455555666666666666655554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-10 Score=116.64 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
...+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|.+.++++++..+. +...+..++.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 5678888999999999999999999998742 334678888999999999999999999999987655 66788889999
Q ss_pred HHhcCCHHHHHHHHHhhccCCC-ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFH-VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 774 (846)
+...|++++|++.++++..... ......+..++.++...|++++|...++++++ ..|+ ...+..++..+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999875432 22456788899999999999999999999999 7885 558889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 003122 775 KYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESL 821 (846)
Q Consensus 775 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l 821 (846)
+|...++++.+. ...++..+..+.......|+.+.+..+.+.+..+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999886 3334555666677778889999998888777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-08 Score=104.44 Aligned_cols=363 Identities=15% Similarity=0.169 Sum_probs=176.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003122 307 IYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHG 386 (846)
Q Consensus 307 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 386 (846)
+.+.....++.+|+.+++.+.... .-...|..+.+.|...|+++.|.++|-+.- .++-.|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdqk----~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK----TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc----cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 344445566666676666665432 123456666777777777777777765432 3445566777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH------------------------
Q 003122 387 MSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNL------------------------ 442 (846)
Q Consensus 387 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~------------------------ 442 (846)
+++.|.++-++... .......|.+-..-+-+.|++.+|.+++-.+. .|+.
T Consensus 806 kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred cHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchHHHHHHHhhCcchHHHHHHHHhChh
Confidence 77777776655432 23334445555555555555555555443221 1221
Q ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------C
Q 003122 443 ---VSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR------------D 507 (846)
Q Consensus 443 ---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------~ 507 (846)
.|...+..-|-..|++..|..-|-+... |...+++|...+-+++|.++-..--.. .
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 1222233334444444444444333221 223333444444444443332110000 0
Q ss_pred CccCH--H------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 003122 508 IKLNT--V------AYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIP 579 (846)
Q Consensus 508 ~~~~~--~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 579 (846)
+..+. . ....-|+.-+.++.++-|..+-+-..+.. .|.. ...+...+-..|++++|-+.+-++++.+.
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyveaiklnt- 1026 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNT- 1026 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHHHhhccc-
Confidence 00000 0 00111222233344444444433333221 1221 22333345567888888888877776531
Q ss_pred CCHHHHHH-------------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 003122 580 LTNQVYSS-------------------VISAYSKQGLIAEAESMFNMMKMSGCSPD--VITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 580 ~~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
-..+|.. -+.++.+.+++..|.++-+.- .|+ ...|..-.......|++.+|..
T Consensus 1027 -ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~~~~l~dv~tgqar~aiee~d~~kae~ 1100 (1636)
T KOG3616|consen 1027 -YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----CEDLLADVLTGQARGAIEEGDFLKAEG 1100 (1636)
T ss_pred -ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----ChhhhHHHHhhhhhccccccchhhhhh
Confidence 1111111 123444555555555544322 123 2344444555566777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH----------------HHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 639 LFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE----------------FMREQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 639 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
++-+.. +|+. .++.|...+.|..|+.+.+ ...+.|.. ....|..-+.-..++|+
T Consensus 1101 fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fvaqak~weq~gd 1170 (1636)
T KOG3616|consen 1101 FLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFVAQAKEWEQAGD 1170 (1636)
T ss_pred heeecC----CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHhccc
Confidence 665543 4553 2333445566666654433 22334433 45556666667788999
Q ss_pred HHHHHHHHHhhccCC
Q 003122 703 WKTTIDLIKQMEPSF 717 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~ 717 (846)
|.+|...+-++....
T Consensus 1171 ~rkav~~~lkinrds 1185 (1636)
T KOG3616|consen 1171 WRKAVDALLKINRDS 1185 (1636)
T ss_pred HHHHHHHHhhhccCC
Confidence 999999888875443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-10 Score=122.20 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C--CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSG----A--EAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAG--IQP-- 790 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p-- 790 (846)
..++++|+..|...|++++|.++|++++..- - .+. ...++.|+..|.+.+++++|.++|.+...-. +.|
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555555555555555554310 0 111 1244444555555555554444444322110 111
Q ss_pred -C-HHhHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 003122 791 -S-YGMFRDIVSFAQTRGGAEYAAIIQERIESL 821 (846)
Q Consensus 791 -~-~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l 821 (846)
+ ..++.+|+..|...|+++.|.++.+++..+
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1 113455555555555555555555554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-07 Score=99.91 Aligned_cols=136 Identities=16% Similarity=0.231 Sum_probs=97.0
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC--------CCCHHHHHHHHHHHH
Q 003122 136 QRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQK-WRC--------KPDAETYNALISAHG 206 (846)
Q Consensus 136 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~--------~~~~~~~~~li~~~~ 206 (846)
-.|+.+.|.+-.+.++. ..+|..|.++|.+.++++-|.-.+-.|.. +|. .++ .+=......-.
T Consensus 740 tiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 34888988877777664 35899999999999999999887766654 221 121 22222333346
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHH
Q 003122 207 RAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALS 286 (846)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 286 (846)
..|.+++|+.+|.+..+ |..|=..|...|.+++|.++-+.--+.. =..||.....-+...++.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHH
Confidence 77999999999999887 5566677889999999999876533322 23456666666677788999998
Q ss_pred HHHHH
Q 003122 287 YFELM 291 (846)
Q Consensus 287 ~~~~m 291 (846)
.|++.
T Consensus 880 yyEK~ 884 (1416)
T KOG3617|consen 880 YYEKA 884 (1416)
T ss_pred HHHhc
Confidence 88864
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-09 Score=109.08 Aligned_cols=219 Identities=17% Similarity=0.102 Sum_probs=127.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHH
Q 003122 551 TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVIT-------YTAM 623 (846)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------~~~l 623 (846)
..+.++..+..++..|++.+...++.. .+..-++....+|...|.+.+++...+...+.|-. ...- +..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 344555555556666666666665543 33334445555566666666555555555443311 1111 1223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDW 703 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 703 (846)
+.+|.+.++++.|+..|.+.+.....||. ..+....++++...+...-.++.. ..-...-+..+...|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 33555566777777777776654333322 223344455555555444444432 22233446666777777
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 704 KTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 704 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
..|+..|.++...+|. +...|.+.+.+|.+.|.+..|..-.+.+++ ++|+.. .|..=+.++....+|++|.+.|++
T Consensus 375 ~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777767766 667777777777777777777777777777 777544 666666667777777777777777
Q ss_pred HHH
Q 003122 783 MED 785 (846)
Q Consensus 783 ~~~ 785 (846)
.++
T Consensus 452 ale 454 (539)
T KOG0548|consen 452 ALE 454 (539)
T ss_pred HHh
Confidence 765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-10 Score=120.91 Aligned_cols=239 Identities=15% Similarity=0.091 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDL-----K-IPLTN-QVYSSVISAYSKQGLIAEAESMFNMMKM-----SGCS 614 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~ 614 (846)
..+...+...|...|+++.|+.+++..++. | ..+.. ...+.+...|...+++++|..+|++++. .|-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346667899999999999999999998864 2 12333 3344578899999999999999999986 2311
Q ss_pred -CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC---C
Q 003122 615 -PD-VITYTAMLHAYNTAEDWEKACALFLEMET-----NNIE-PD-SIACSALMRAFNKGGQPSKVLLVAEFMREQ---D 682 (846)
Q Consensus 615 -p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 682 (846)
|. ..+++.|..+|.+.|++++|..+++++.+ .|.. |+ ...++.++..|+..+++++|..++.+..+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 46788888899999999999999999875 1222 22 234667777899999999999999988762 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhhccCC----C---ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 683 ITFS----DSIFFEMVLACSLLRDWKTTIDLIKQMEPSF----H---VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 683 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
+.++ ..++..++..|...|++++|.++++++.... . ...-..++.|+..|.+.+++++|.++|.++...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3578899999999999999999999874321 1 112446789999999999999999999998652
Q ss_pred C--CCc---CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 752 G--AEA---NFN-TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 752 g--~~p---~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
. ..| +.. +|..|+..|..+|++++|+++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 223 433 899999999999999999999988764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-08 Score=103.66 Aligned_cols=258 Identities=12% Similarity=0.151 Sum_probs=125.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc--
Q 003122 273 SAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVN-- 350 (846)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 350 (846)
..+...|++++|++.++.-... +.............+.+.|+.++|..++..++..+|+ |...|..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd---n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD---NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHhhhcc
Confidence 3345556666666666554332 2223344445556666666666666666666665543 444455554444222
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHH
Q 003122 351 ---GQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSK-EALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKA 426 (846)
Q Consensus 351 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 426 (846)
...+....+++++...- |.......+.-.+.....+. .+...+..+...|+++ +++.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 23455555555554431 22222222211121111121 2334444455555432 344444444433333333
Q ss_pred HHHHHHHHHC--------------CCCcCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003122 427 REVFNMMRIN--------------NLKPNLV--SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPN-IVSICTLLAACGR 489 (846)
Q Consensus 427 ~~~~~~m~~~--------------~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~ 489 (846)
..++...... .-+|... ++..+...|...|++++|++++++.++. .|+ +..|..-...+-.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 3344333221 0123332 3344556666677777777777777664 333 3445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 003122 490 CGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRK 542 (846)
Q Consensus 490 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 542 (846)
.|++.+|...++.+...+ ..|...-+..+..+.++|++++|.+++......+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 666666665555555543 2244444455555666666666666666655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-10 Score=100.96 Aligned_cols=198 Identities=11% Similarity=0.026 Sum_probs=137.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC 697 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 697 (846)
+...|.-.|.+.|+...|..-+++.++ ..|+ ..+|..+...|.+.|..+.|.+.|+++++..+. +..+++..+..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 344555666777777777777777776 3444 446666666677777777777777777766555 566666777777
Q ss_pred HhcCCHHHHHHHHHhhccC--CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHH
Q 003122 698 SLLRDWKTTIDLIKQMEPS--FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 774 (846)
|..|++++|.+.|+++... .+. ...+|.+++.+-.+.|+.+.|...|+++++ +.|+ ..+...+....++.|++.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~-~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCC-cchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccch
Confidence 7777777777777766432 222 346677888888888888888888888888 8885 457778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 003122 775 KYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 775 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~ 823 (846)
.|..++++....|. +........+.+-...|+...+..+...|..+-+
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88888888776543 5555555556666667777777777777766543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-07 Score=96.29 Aligned_cols=149 Identities=16% Similarity=0.107 Sum_probs=81.3
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003122 562 RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN--------MMKMSGCSPDVITYTAMLHAYNTAEDW 633 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (846)
.+.+|.+++...-+........+...++.....+|+++.|.+++. .+.+.+..|- +...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 456666666666554322224455556666666777777777776 4554433333 334455555555555
Q ss_pred HHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 634 EKACALFLEMETN--NIEPDSI----ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTI 707 (846)
Q Consensus 634 ~~A~~~~~~~~~~--g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 707 (846)
+-|..++.+.+.. .-.+... ++.-++..-.+.|+-++|..+++++.+.++. +......++.+|+.. +.+.|+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHH
Confidence 5555555554420 0111112 2222333334557777777777777775544 666666666666655 466666
Q ss_pred HHHHhhc
Q 003122 708 DLIKQME 714 (846)
Q Consensus 708 ~~~~~~~ 714 (846)
.+-+.+.
T Consensus 512 ~l~k~L~ 518 (652)
T KOG2376|consen 512 SLSKKLP 518 (652)
T ss_pred HHhhcCC
Confidence 6666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-08 Score=104.50 Aligned_cols=250 Identities=11% Similarity=0.035 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-------HHHH
Q 003122 515 YNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQ-------VYSS 587 (846)
Q Consensus 515 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~ 587 (846)
...+.++..+..+++.|++.+....+.. .+..-++....+|...|.+.+........++.|. -... .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 3455666666777777777777777653 2333345555667777777777766666665442 1111 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI-ACSALMRAFNKGG 666 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 666 (846)
++.+|.+.++++.|+..|++.+...-.|+. ..+....+++.+..+...- +.|+.. ....-+..+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 455777788999999999988764333332 2334556666666666554 445532 2223367788999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 003122 667 QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFF 746 (846)
Q Consensus 667 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 746 (846)
++..|+..|.+++..+|. |...|..-+.+|.+.|.+..|+.-.+...+.+|. .+..|..-+.++.-..+++.|.+.|.
T Consensus 373 dy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998866 7888999999999999999999998888888887 56667777888888899999999999
Q ss_pred HHHhcCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 003122 747 KIVSSGAEANFNTY-SILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 747 ~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
++++ .+|+..-+ ..+.+++..+.......++.++
T Consensus 451 eale--~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 451 EALE--LDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHh--cCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999 88966533 3344444432223333444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-09 Score=109.97 Aligned_cols=93 Identities=15% Similarity=0.036 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYN 628 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 628 (846)
|..+...+...|+.++|...|+++++.. |.+...|+.++..+...|++++|...|++.++. .|+ ..+|..++.++.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 4444444455555555555555555442 334445555555555555555555555555442 232 344444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003122 629 TAEDWEKACALFLEMET 645 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~ 645 (846)
..|++++|++.|++..+
T Consensus 144 ~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-09 Score=110.96 Aligned_cols=226 Identities=15% Similarity=0.062 Sum_probs=162.6
Q ss_pred cCCHhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 560 LSRYSEALGFLDEMMDLK-IPL--TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKA 636 (846)
Q Consensus 560 ~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (846)
.+..+.++..+.+++... ..| ....|..++..|...|+.++|...|++.++.. +.+...|+.++..+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 346677788888887532 112 24568888889999999999999999999863 33489999999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 637 CALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 637 ~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
...|++.++ +.|+ ..+|..++.++...|++++|++.|++.++.++. +. ........+...++.++|+..+++...
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999998 5665 678888999999999999999999999997654 22 222223345567889999999976543
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 716 SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS---G--AEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 716 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
..+. + .|. ........|++.++ +.++.+.+. . +.|+ ..+|..++.+|.+.|++++|+..|+++.+.. .
T Consensus 194 ~~~~-~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 194 KLDK-E--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred hCCc-c--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 3222 1 222 23333345655444 244444321 0 2332 3489999999999999999999999998742 2
Q ss_pred CCHHhHH
Q 003122 790 PSYGMFR 796 (846)
Q Consensus 790 p~~~~~~ 796 (846)
||...++
T Consensus 268 ~~~~e~~ 274 (296)
T PRK11189 268 YNFVEHR 274 (296)
T ss_pred chHHHHH
Confidence 3544433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-08 Score=104.10 Aligned_cols=292 Identities=14% Similarity=0.118 Sum_probs=185.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhc-
Q 003122 131 IKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYN-ALISAHGRA- 208 (846)
Q Consensus 131 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~- 208 (846)
...+...|++++|++.++.-.+.- ......+......+.+.|+.++|..+|..+.+++ |+...|. .+..++.-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 445567799999999987654432 3445567778889999999999999999998865 5555544 444444222
Q ss_pred ----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHH
Q 003122 209 ----GQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWR-EALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSK 283 (846)
Q Consensus 209 ----g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~-~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 283 (846)
...+....+|+++...- |...+...+.-.+.....+. .+...+..+...|++ .+|+.|-..|.......-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 25677788888876653 33333333322222222333 344556666677764 345566666665555555
Q ss_pred HHHHHHHHHhC----C----------CCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 003122 284 ALSYFELMKGT----N----------IRPDT--TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLY 347 (846)
Q Consensus 284 A~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~ 347 (846)
..+++...... + -.|.. .++..+...|...|++++|++.+++.++..|. .+..|..-...+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~Karil 238 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHH
Confidence 55666555422 1 12233 24456677777888888888888888876554 466777778888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--------hHHHHHHHHHh
Q 003122 348 SVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIV--------SYTSLLNAYGR 419 (846)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~ll~~~~~ 419 (846)
-..|++++|.+.++...... ..|...-+..+..+.+.|++++|.+++....+.+..|... .......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887764 2355566666777778888888888888777655432211 11334556777
Q ss_pred cCChHHHHHHHHHHHH
Q 003122 420 SQQPVKAREVFNMMRI 435 (846)
Q Consensus 420 ~g~~~~A~~~~~~m~~ 435 (846)
.|++..|++-|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777766655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-09 Score=97.03 Aligned_cols=203 Identities=11% Similarity=-0.029 Sum_probs=113.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
...|.-+|...|+...|..-++++++.. |.+..++..+...|.+.|..+.|.+.|++.+... +-+-.+.|..+..+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344555666666666666666666643 4445566666666666666666666666666532 1234556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTID 708 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 708 (846)
.|++++|...|++++....-+. ..+|..++-+..+.|+.+.|.+.|++.++.++. .+.....+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 6666666666666665321111 345666666666666666666666666665544 34444555555555566666655
Q ss_pred HHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 709 LIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
++++.....+ .+...+-..+..-...|+.+.|-++=.++.. ..|...
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSE 241 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcH
Confidence 5555544444 2334443444444455555555555555544 455443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-07 Score=93.46 Aligned_cols=456 Identities=13% Similarity=0.094 Sum_probs=225.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc
Q 003122 271 VLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVN 350 (846)
Q Consensus 271 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 350 (846)
=++.+...|++++|.+...++...+ +.+...+..-+-++.+.+++++|+.+.+.-.... .+.+.+.--+.+..+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----VINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----hcchhhHHHHHHHHHc
Confidence 3556678889999999999998876 5566777777888889999999997665443210 1111112223445578
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCChHHHHH
Q 003122 351 GQIENCKGVFNTMLAEGLKPN-IVSYNALMAAYASHGMSKEALSVFNEIKKNGLCP-DIVSYTSLLNAYGRSQQPVKARE 428 (846)
Q Consensus 351 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~ 428 (846)
++.++|+..++. ..++ ..+...-...+.+.|++++|..+|+.+.+++..- |...-..++.. +-.-.+.
T Consensus 93 nk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~- 162 (652)
T KOG2376|consen 93 NKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ- 162 (652)
T ss_pred ccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-
Confidence 899999988872 2333 3355555667788999999999999998875431 11111112111 1111111
Q ss_pred HHHHHHHCCCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003122 429 VFNMMRINNLKPN--LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR 506 (846)
Q Consensus 429 ~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 506 (846)
+.+... ..|+ -..+......+...|++.+|+++++...+.+... +. .++.. -+.+-.++
T Consensus 163 ~~q~v~---~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l~-~~d~~-eEeie~el--- 223 (652)
T KOG2376|consen 163 LLQSVP---EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------LE-DEDTN-EEEIEEEL--- 223 (652)
T ss_pred HHHhcc---CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------hc-ccccc-hhhHHHHH---
Confidence 122222 1221 1222223445677899999999998884422100 00 00000 00000000
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHhcCCHhH--HHHHHHHHHH-----
Q 003122 507 DIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTY----TVLISSCCRLSRYSE--ALGFLDEMMD----- 575 (846)
Q Consensus 507 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~li~~~~~~g~~~~--A~~~~~~~~~----- 575 (846)
+ .+-..|.-.+...|+-++|..+|...++.. .+|.... |.|+. ...-.++-. ++..++....
T Consensus 224 ----~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 224 ----N-PIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred ----H-HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHH
Confidence 0 011123334445566666666665555543 2232211 11111 111111110 1111111100
Q ss_pred ------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH-HhcCCHHHHHHHHHHHHHCC
Q 003122 576 ------LKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH-AY-NTAEDWEKACALFLEMETNN 647 (846)
Q Consensus 576 ------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~-~~~g~~~~A~~~~~~~~~~g 647 (846)
..-.-....-+.++..| .+.-+.+.++...... ..|.. .+..++. ++ ++.....+|.+++...-+.
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~- 370 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADG- 370 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc-
Confidence 00000001111222222 2223333333333222 12222 2222222 22 2222466666666666553
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Q 003122 648 IEPD--SIACSALMRAFNKGGQPSKVLLVAE--------FMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQM---- 713 (846)
Q Consensus 648 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 713 (846)
.|+ ..+...++......|+++.|++++. ...+.+.. +.+...+...+.+.++-+-|.+++.++
T Consensus 371 -~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 371 -HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred -CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 333 2344445555666777777777777 44443333 333444555555555544444444332
Q ss_pred ---ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 714 ---EPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 714 ---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
....+. -...+..++..-.++|+.++|...++++++ ..| |..+...++.+|+... .++|..+=
T Consensus 448 ~~~~t~s~~-l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 448 RKQQTGSIA-LLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARLD-PEKAESLS 514 (652)
T ss_pred HHhcccchH-HHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhcC-HHHHHHHh
Confidence 222211 123344555555677999999999999998 777 5558888888888764 45565443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-08 Score=95.07 Aligned_cols=191 Identities=10% Similarity=0.067 Sum_probs=116.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 555 SSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWE 634 (846)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (846)
..+...|+...|+.+...+++.. +.+...|..-..+|...|++..|+.-++...+.. ..+..+..-+...+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 34556788888888888888864 6788888888889999999999988888777642 345667777777888889988
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 003122 635 KACALFLEMETNNIEPDSIACSAL-------------MRAFNKGGQPSKVLLVAEFMREQDITFSD---SIFFEMVLACS 698 (846)
Q Consensus 635 ~A~~~~~~~~~~g~~p~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 698 (846)
.++...++.++ +.||...+... +......++|-++++..++.++..+.... ..+..+-.++.
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 88888888887 67775433221 11122344455555555555544332111 11222223344
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
..|++-+|++...++....|. ++.++-.-+.+|.-...++.|+.-|+++.+
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 445555555555555544444 444444455555555555555555555555
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-10 Score=113.66 Aligned_cols=243 Identities=11% Similarity=0.086 Sum_probs=175.9
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 003122 556 SCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSP-DVITYTAMLHAYNTAEDWE 634 (846)
Q Consensus 556 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 634 (846)
-+.+.|++.+|.-.|+..++.+ |-+...|..|+......++-..|+..+++.++. .| |......|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 3456677777777777777764 566777777777777777777777777777774 34 3667777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCC
Q 003122 635 KACALFLEMETNNIEPDSIACSALMR-----------AFNKGGQPSKVLLVAEFMR-EQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 635 ~A~~~~~~~~~~g~~p~~~~~~~l~~-----------~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
+|+++++.-+... |. |..+.. .+..........++|-.+. ..+..+|+.+...++-+|...|+
T Consensus 371 ~Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 7888777776521 11 111111 1111112233344555444 44545789999999999999999
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 003122 703 WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
+++|++.|+.+....|. +..+||.|+..++...+.++|+..|.++++ +.|+.+ +.+.|+-.|...|.|+||.+.|=
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999998 889999999999999999999999999999 999866 88899999999999999999887
Q ss_pred HHHHCCCC---------CCHHhHHHHHHHHHhcCCcc
Q 003122 782 WMEDAGIQ---------PSYGMFRDIVSFAQTRGGAE 809 (846)
Q Consensus 782 ~~~~~g~~---------p~~~~~~~l~~~~~~~~~~~ 809 (846)
.++..--+ ++..++..|-.++...+..+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 76542111 12235555555555545444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-07 Score=91.07 Aligned_cols=309 Identities=10% Similarity=0.016 Sum_probs=213.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHH
Q 003122 476 NIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYT-VLI 554 (846)
Q Consensus 476 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li 554 (846)
++.-..-+...+...|++.+|..-|..+++.+ +.+-.++-.-...|...|+-..|+.-+...++. +||-..-. .-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44455566777888888888888888888763 223334444466788888888888888888876 67754322 233
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003122 555 SSCCRLSRYSEALGFLDEMMDLKIPL--TNQVYS------------SVISAYSKQGLIAEAESMFNMMKMSGCSPDVITY 620 (846)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 620 (846)
..+.+.|.+++|..-|+.+++..... ...++. ..+..+...|+...|+.....+++.. +-|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 45678899999999999988764211 111221 12334556788888888888888742 2356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHH------
Q 003122 621 TAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF--SDSIFFE------ 692 (846)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~------ 692 (846)
..-..+|...|....|+.-++...+.. .-+..++.-+...+...|+.+.++...++.++.+++- .-..|-.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 777888888888888888777776631 2345566677777888899888888888888865431 1111111
Q ss_pred ---HHHHHHhcCCHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHH
Q 003122 693 ---MVLACSLLRDWKTTIDLIKQMEPSFHVVS---IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLK 765 (846)
Q Consensus 693 ---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 765 (846)
-+......++|-++++..++....+|... ...+..+-.++...|++.+|++.-.++++ ..|| ..++..-+.
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHH
Confidence 11234466778888888888776766632 33344556667777899999999999988 8885 558888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 766 NLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 766 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
+|.....|++|+.-|+++.+ +.++..
T Consensus 350 A~l~dE~YD~AI~dye~A~e--~n~sn~ 375 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALE--LNESNT 375 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHh--cCcccH
Confidence 88888889999999998887 445443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-07 Score=88.16 Aligned_cols=431 Identities=15% Similarity=0.126 Sum_probs=251.9
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHH-H
Q 003122 265 LVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTS-I 343 (846)
Q Consensus 265 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-l 343 (846)
..-+.+.+..+.+..++++|++++....++. +.+......+..+|....++..|-+.++++-... |...-|.. -
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~----P~~~qYrlY~ 84 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH----PELEQYRLYQ 84 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----hHHHHHHHHH
Confidence 3345666666777888888888888877764 2367778888899999999999999999887643 33333322 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 003122 344 IHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALM--AAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQ 421 (846)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 421 (846)
...+.+.+.+.+|+++...|.+. ++...-..-+ ......+++..+..++++....| +..+.+...-...+.|
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 45667888999999998888652 2322211112 22345688888888888876432 4455555555667899
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHH
Q 003122 422 QPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVS----ICTLLAACGRCGRKVNID 497 (846)
Q Consensus 422 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~----~~~ll~~~~~~g~~~~a~ 497 (846)
+++.|.+-|+...+-+--.....||.-+ +..+.|+++.|+++..++++.|++..+.. ..-.+++ ..+..-.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~ 233 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTL 233 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchH
Confidence 9999999999888765455567777555 45577999999999999998875432110 0000000 0000000
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003122 498 AVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR-KVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL 576 (846)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 576 (846)
.+.... -+.++|.-...+.+.|+++.|.+.+.+|--+ ....|.+|...+.-.- ..+++-+..+-+.-++..
T Consensus 234 ~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 000000 1234555555677889999999988888543 1234667765543221 234555566666666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003122 577 KIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCS-PDVITYTAMLHAYN-TAEDWEKACALFLEMETNNIEPDSIA 654 (846)
Q Consensus 577 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~~ 654 (846)
+ |-...||..++-.||+..-++-|-.++-+-....+. .+...|+ |++++. ..-..++|.+-++.+...
T Consensus 306 n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~-------- 375 (459)
T KOG4340|consen 306 N-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM-------- 375 (459)
T ss_pred C-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH--------
Confidence 4 456678888888899998888887776543221100 1122222 223322 233555665555444321
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
+..-+ ..-|+++-+ ....+ +.......+ .+++++++.+- .+..+.++.|+.
T Consensus 376 ---l~~kL-----RklAi~vQe-~r~~~---dd~a~R~ai------~~Yd~~LE~YL-----------PVlMa~AkiyW~ 426 (459)
T KOG4340|consen 376 ---LTEKL-----RKLAIQVQE-ARHNR---DDEAIRKAV------NEYDETLEKYL-----------PVLMAQAKIYWN 426 (459)
T ss_pred ---HHHHH-----HHHHHHHHH-HHhcc---cHHHHHHHH------HHHHHHHHHHH-----------HHHHHHHHhhcc
Confidence 00000 011122111 11111 222222221 23444544442 234577788888
Q ss_pred cCCHHHHHHHHHHHHhcCCCcCHHHH
Q 003122 735 SGRIESMMKLFFKIVSSGAEANFNTY 760 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p~~~~~ 760 (846)
..++..+++.|.+..+ .-.+..+|
T Consensus 427 ~~Dy~~vEk~Fr~Sve--fC~ehd~W 450 (459)
T KOG4340|consen 427 LEDYPMVEKIFRKSVE--FCNDHDVW 450 (459)
T ss_pred ccccHHHHHHHHHHHh--hhccccee
Confidence 8999999999998888 44444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=81.13 Aligned_cols=49 Identities=41% Similarity=0.662 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003122 193 PDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACG 241 (846)
Q Consensus 193 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 241 (846)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444555555555555555555555555555555555555555554444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-07 Score=96.30 Aligned_cols=262 Identities=12% Similarity=0.004 Sum_probs=143.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 521 SYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR----LSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
.+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+... ....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 3445677777777777766652 223333331 112222 33444444444331 1112233344445666777778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChhHHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNI-EPDS--IACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~--~~~~~l~~~~~~~g~~~~A~~ 673 (846)
++++|...+++..+.. +.+...+..+..++...|++++|..++++.....- .|+. ..|..+...+...|++++|+.
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888777753 33456667777777778888888888777776321 1222 234466677777888888888
Q ss_pred HHHHHHHCCCCCC-HHHH-H--HHHHHHHhcCCHHHHHHH---HHhhccCCC-ccchhhHHHHHHHHHhcCCHHHHHHHH
Q 003122 674 VAEFMREQDITFS-DSIF-F--EMVLACSLLRDWKTTIDL---IKQMEPSFH-VVSIGLLNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 674 ~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 745 (846)
+++++....+... .... . .+...+...|....+.++ ........+ ..........+.++...|+.++|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8887764332111 1111 1 222333344433222222 111111111 111122235666777888899999988
Q ss_pred HHHHhcCCC-------c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 746 FKIVSSGAE-------A-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 746 ~~~~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+.+...... . ........+.++...|++++|++.+..+.+.
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 887653221 1 1224444455688999999999999888653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-10 Score=80.40 Aligned_cols=49 Identities=39% Similarity=0.628 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 003122 228 PSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYK 276 (846)
Q Consensus 228 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 276 (846)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-08 Score=103.18 Aligned_cols=247 Identities=14% Similarity=0.098 Sum_probs=157.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 522 YMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 601 (846)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+.++.. |.+..+...|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345555555555555555543 2244455555555555555556666666666553 44555555666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003122 602 ESMFNMMKMSGCSPDVITYTAML---------HAYNTAEDWEKACALFLEME-TNNIEPDSIACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A 671 (846)
...++..+... |.. .|.... ..+..........++|-++. ..+..+|+.+...|.-.|.-.|.+++|
T Consensus 373 l~~L~~Wi~~~--p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNK--PKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhC--ccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 66666554421 100 000000 01111122333444555544 344446777777888888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
+..|+.++...|. |...|+.++..+....+.++|+..|.++.+..|. -+.++.+|+-.|...|.+++|...|-.++.
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~- 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS- 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH-
Confidence 9999999887666 7788889999999888999999999999888887 667888999999999999999999998876
Q ss_pred CCCcC-----------HHHHHHHHHHHHhcCCHHHHH
Q 003122 752 GAEAN-----------FNTYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 752 g~~p~-----------~~~~~~l~~~~~~~g~~~~A~ 777 (846)
+.+. ..+|..|-.++...++.+-+.
T Consensus 527 -mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 527 -MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred -hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 3221 236666665566666655443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-07 Score=95.18 Aligned_cols=204 Identities=11% Similarity=0.027 Sum_probs=133.9
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG-LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDW--EK 635 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~ 635 (846)
..++.++|+....++++.+ |.+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3456777777777777754 445556666666666666 5677888887777653 33456677666666555552 56
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHH
Q 003122 636 ACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL---RD----WKTTID 708 (846)
Q Consensus 636 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~ 708 (846)
++.+++++++.. +-|..+|.....++.+.|++++|++.++++++.++. +..+|+..+.++... |. .+++++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 777777777632 234667777777777778888888888888877666 566666666655443 22 245666
Q ss_pred HHHhhccCCCccchhhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHh
Q 003122 709 LIKQMEPSFHVVSIGLLNQLLHLLGKS----GRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLA 769 (846)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 769 (846)
+.+++....|. +..+|+.+..++... ++..+|...+.++++ ..|+ ......|++.|+.
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 66666666666 667777777777663 344567777777766 5663 4466667777665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=107.85 Aligned_cols=261 Identities=14% Similarity=0.077 Sum_probs=195.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003122 544 MPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAM 623 (846)
Q Consensus 544 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 623 (846)
+|--..-..+...+.+.|-..+|..++++. ..|...+.+|+..|+..+|..+..+-+++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 444444456677788888899998888764 37888888899999999999888887774 6888889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDW 703 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 703 (846)
++......-+++|.++.+..... +-..+.......++++++.+.|+...+.++- ...+|+..+.++.+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhh
Confidence 98888888888888888776542 2222333344578999999999998886654 678888889899999999
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 704 KTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 704 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
+.|.+.|.......|. ....||++..+|.+.|+..+|...+.++++.. .-+...|.+......+.|.|++|++.++++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999998888887 78899999999999999999999999999843 224557777777888999999999999988
Q ss_pred HHCCCC-CCHHhHHHHHHHHHh---cCCcchHHHHHHHHHHHhhcc
Q 003122 784 EDAGIQ-PSYGMFRDIVSFAQT---RGGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 784 ~~~g~~-p~~~~~~~l~~~~~~---~~~~~~a~~~~~~l~~l~~~~ 825 (846)
.+.... .|+.....+...... ++..+++...+....++..+.
T Consensus 614 l~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~ 659 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKV 659 (777)
T ss_pred HHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHH
Confidence 764322 244443333322222 455667777776666555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-07 Score=95.38 Aligned_cols=204 Identities=12% Similarity=0.062 Sum_probs=162.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-
Q 003122 592 YSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAE-DWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQP- 668 (846)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~- 668 (846)
+...++.++|+.++.++++. .|+ ..+|+....++...| ++++++..++++++.. +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 34457889999999999985 454 678888888888777 6899999999999842 33456788777777777764
Q ss_pred -hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CC----HHH
Q 003122 669 -SKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS---GR----IES 740 (846)
Q Consensus 669 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~ 740 (846)
++++.+++++++.+++ +..+|...+.++...|+++++++.++++.+.++. +..+|+..+.++.+. |. .++
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 7789999999998877 8899999999999999999999999999998888 778999998888765 32 357
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHh
Q 003122 741 MMKLFFKIVSSGAEA-NFNTYSILLKNLLA----AGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQT 804 (846)
Q Consensus 741 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 804 (846)
+..+..+++. +.| |..+|+.+..+|.. .++..+|.+.+.++... .| +.....-+++.+..
T Consensus 202 el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHh
Confidence 8888889999 999 55699999999888 35567798888887663 34 34456666666654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-06 Score=105.04 Aligned_cols=302 Identities=11% Similarity=-0.030 Sum_probs=189.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC------ccC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHH
Q 003122 486 ACGRCGRKVNIDAVLLAAEMRDI------KLN--TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDS----VTYTVL 553 (846)
Q Consensus 486 ~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l 553 (846)
.+...|+.+++...+..+...-. .+. ......+...+...|++++|...+++....-...+. .....+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 34455666666666655433200 001 111222334556788899998888887653111121 234455
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHH
Q 003122 554 ISSCCRLSRYSEALGFLDEMMDLKI---PL--TNQVYSSVISAYSKQGLIAEAESMFNMMKMS----GCS--P-DVITYT 621 (846)
Q Consensus 554 i~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p-~~~~~~ 621 (846)
...+...|++++|...+.++..... .+ ...++..+...+...|++++|...+++.... +.. + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 5667788999999998888774211 11 1234556677788899999999988877652 211 1 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHH-----H
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETN--NIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS-DSIF-----F 691 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~ 691 (846)
.+...+...|++++|...+++.... ...+. ...+..+...+...|++++|...++++........ ...+ .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 5666777789999999998887652 11122 33455566678889999999999888865311111 1111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCcC-HHHHHHH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVS---IGLLNQLLHLLGKSGRIESMMKLFFKIVSS----GAEAN-FNTYSIL 763 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l 763 (846)
.....+...|+.+.|.+++........... ...+..++.++...|+.++|...+++++.. |..++ ..++..+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 122345568899999999877654322211 122457788888999999999999998763 12222 2366777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 764 LKNLLAAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~~g 787 (846)
+.+|...|+.++|...+.++.+..
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888999999999999999998753
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-06 Score=91.37 Aligned_cols=306 Identities=12% Similarity=0.011 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 408 VSYTSLLNAYGRSQQPVKAREVFNMMRINNL-KPNL-VSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLA 485 (846)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 485 (846)
..|..+...+...|+.+.+...+........ ..+. .........+...|++++|.+++++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 4456666666667777776666655543321 1121 112222334556777777777777776642 222222211 11
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHh
Q 003122 486 ACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD-SVTYTVLISSCCRLSRYS 564 (846)
Q Consensus 486 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 564 (846)
.+...| ...+..+.+.+.+..... ..|+ ......+...+...|+++
T Consensus 85 ~~~~~~-------------------------------~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 85 GAFGLG-------------------------------DFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHHHhc-------------------------------ccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHH
Confidence 111111 112333333333333111 1222 233344555666677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 565 EALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGC-SPD--VITYTAMLHAYNTAEDWEKACALFL 641 (846)
Q Consensus 565 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (846)
+|...+++.++.. +.+...+..+..+|...|++++|...+++...... .++ ...|..+...+...|++++|+.+++
T Consensus 132 ~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 132 RAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777654 44455666667777777777777777776665321 122 2234566666777777777777777
Q ss_pred HHHHCCCCCC-HHHH-H--HHHHHHHhcCChhHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003122 642 EMETNNIEPD-SIAC-S--ALMRAFNKGGQPSKVLLVAEFMRE----QDI-TFSDSIFFEMVLACSLLRDWKTTIDLIKQ 712 (846)
Q Consensus 642 ~~~~~g~~p~-~~~~-~--~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (846)
++......+. .... + .++..+...|..+.+..+ +.+.. ... ..........+.++...|+.++|..+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 211 THIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 7654211111 1111 1 223333344433333222 11111 100 00111122455566777778888777776
Q ss_pred hccCCCc--------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 713 MEPSFHV--------VSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 713 ~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+...... ..+.+....+.++...|+.++|.+.+..++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6432111 1233444556667789999999999999887
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-08 Score=103.59 Aligned_cols=220 Identities=10% Similarity=0.054 Sum_probs=178.6
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 509 KLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSV 588 (846)
Q Consensus 509 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 588 (846)
+|--..-..+...+...|-...|+.+|+++ ..|..+|.+|+..|+..+|..+..+-++ -+|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 444444556778888999999999988865 3577888899999999999999988887 37899999998
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003122 589 ISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQ 667 (846)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 667 (846)
++.....--+++|.++++..... .-..+.......++++++.+.|+...+ +.| -..+|..+..+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhh
Confidence 88887777788888888765432 222333333457899999999999887 334 35688888888999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
++.|.+.|...+...|. +...|+.+..+|.+.++..+|...++++.+.+.. +..+|-+......+.|.+++|++++.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999987766 7889999999999999999999999999888744 788899999999999999999999999
Q ss_pred HHh
Q 003122 748 IVS 750 (846)
Q Consensus 748 ~~~ 750 (846)
+++
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 886
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-06 Score=80.29 Aligned_cols=194 Identities=13% Similarity=0.153 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHH
Q 003122 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNN-LINACG 241 (846)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-ll~~~~ 241 (846)
+++.+..+.+..++++|++++..-.++. +.+......|..+|.+..++..|-..|+++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4555555566666666666666555533 224555556666666666666666666666543 233333332 234445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH--HHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHH
Q 003122 242 STGNWREALKVCKKMTENGVGPDLVTHNIVLS--AYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKA 319 (846)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 319 (846)
+.+.+..|+++...|... ++...-..-+. .....+++..+..+.++.... .+..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 566666666666655542 11111111111 123345555555555554432 2344444444445555555555
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003122 320 IDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGL 368 (846)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 368 (846)
.+-|+...+.+ +.. ...+|+.-+ +..+.|+++.|++...+++++|+
T Consensus 164 vqkFqaAlqvs-Gyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 164 VQKFQAALQVS-GYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHhhc-CCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 55555555432 111 233444332 22344555555555555555554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-08 Score=98.21 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=84.5
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCC
Q 003122 556 SCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITY---TAMLHAYNTAED 632 (846)
Q Consensus 556 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~ 632 (846)
.+...|++++|++++.+. .+.......+.+|.+.++++.|.+.++.|.+. ..|.... .+.+..+.-.+.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchh
Confidence 344556666666665431 34555556666666777777777777666653 2332211 122222222235
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 003122 633 WEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDW-KTTIDLIK 711 (846)
Q Consensus 633 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 711 (846)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.++++++++.++. ++.++..++-+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 66777777776543 4456666666666667777777777777766665544 455555566555666665 45556666
Q ss_pred hhccCCCc
Q 003122 712 QMEPSFHV 719 (846)
Q Consensus 712 ~~~~~~~~ 719 (846)
++....|.
T Consensus 261 qL~~~~p~ 268 (290)
T PF04733_consen 261 QLKQSNPN 268 (290)
T ss_dssp HCHHHTTT
T ss_pred HHHHhCCC
Confidence 66555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00012 Score=75.71 Aligned_cols=212 Identities=12% Similarity=0.059 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003122 598 IAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA---EDWEKACALFLEMETN-NIEPDSIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
-++|..+++.....-..-+..+|..+.+---.. ...+.....++++... .+.|+ .+|..++..-.+..-.+.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 355566666555422122334444444322111 1356666777777652 23343 367777777777777899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
+|.++.+.+..+......+..--|.-+++.+.|..+|+.-....+. ++..-...+..+...++=+.|+.+|++++.+++
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998665542222223333455678889999999988777776 555556777778888988999999999999877
Q ss_pred CcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHhHHHHHHHHHhcCCcchHH
Q 003122 754 EANF--NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ----PSYGMFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 754 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----p~~~~~~~l~~~~~~~~~~~~a~ 812 (846)
.||- ..|..++.-=.+.|+...++++=+++... ++ +.-..-..+.+.+.-.+..+...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhcccccccH
Confidence 7753 48999999888999999988887777653 32 11122334444444445444333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-07 Score=89.42 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=116.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 625 HAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 704 (846)
..|...|+++.+....+++.. |. ..+...++.++++..+++.++.++. +...|..++.+|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHH
Confidence 457778887776544433321 11 0122366778888888888887766 7888888899999999999
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 705 TTIDLIKQMEPSFHVVSIGLLNQLLHLL-GKSGR--IESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
+|+..++++....|. +..++..++.++ ...|+ .++|.++++++++ ..| +..++..++..+.+.|++++|+..|
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998888887 778888888874 67676 5999999999999 889 5568888889999999999999999
Q ss_pred HHHHHCCCCCCHH
Q 003122 781 QWMEDAGIQPSYG 793 (846)
Q Consensus 781 ~~~~~~g~~p~~~ 793 (846)
+++.+. ..|+..
T Consensus 168 ~~aL~l-~~~~~~ 179 (198)
T PRK10370 168 QKVLDL-NSPRVN 179 (198)
T ss_pred HHHHhh-CCCCcc
Confidence 999875 344443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-07 Score=93.39 Aligned_cols=183 Identities=11% Similarity=0.003 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---
Q 003122 579 PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD----VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--- 651 (846)
Q Consensus 579 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--- 651 (846)
......+..++..+...|++++|...|+++... .|+ ..++..++.++...|++++|+..++++++. .|+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 345667778888888899999999999888875 233 246777888888889999999999998873 343
Q ss_pred -HHHHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccch
Q 003122 652 -SIACSALMRAFNKG--------GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSI 722 (846)
Q Consensus 652 -~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 722 (846)
..++..+..++... |++++|++.++++++..+. +......+..... ..... .
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~--------------~ 166 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL--------------A 166 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH--------------H
Confidence 12456666666654 6788888888888876554 2222211111100 00000 0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.....++..|.+.|++++|+..++++++ ..|+ ...+..++.+|.+.|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVE--NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1123677788999999999999999998 6553 358889999999999999999998887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-07 Score=101.44 Aligned_cols=133 Identities=9% Similarity=-0.006 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 614 SPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE 692 (846)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 692 (846)
+.+...+..|.....+.|.+++|..+++...+ +.|| ......++.++.+.+++++|+..++++++.+++ +....+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 33455555555555566666666666666655 4454 334445555555666666666666666655544 4555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
++.++...|++++|+.+|+++...+|. +..++..++.++.+.|+.++|...|+++++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555554443 445555555555555555555555555555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.8e-08 Score=86.59 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=51.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 736 (846)
.+..++...|++++|...|+.++..++. +...+..++.++...|++++|+..++++...+|. ++.++..++.++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 3444555555555555555555554433 4445555555555555555555555555554444 4455555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCcC
Q 003122 737 RIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~ 756 (846)
++++|+..|+++++ +.|+
T Consensus 107 ~~~eAi~~~~~Al~--~~p~ 124 (144)
T PRK15359 107 EPGLAREAFQTAIK--MSYA 124 (144)
T ss_pred CHHHHHHHHHHHHH--hCCC
Confidence 55555555555555 5553
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-07 Score=85.11 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
..+...+...|+-+.+..+..+.....++ +.......+....+.|++.+|+..+.++....|. +..+|+.++.+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHc
Confidence 45555666666666666666655443333 4445555666666777777777777776666666 666777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 003122 736 GRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAII 814 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 814 (846)
|+.++|...|.++++ +.| ++..+++|+..|.-.|+.++|..++......+ ..|..+-.++.-.....|+.++|+.|
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 777777777777777 666 45566667777777777777777766665532 12344445555555556666666655
Q ss_pred H
Q 003122 815 Q 815 (846)
Q Consensus 815 ~ 815 (846)
-
T Consensus 225 ~ 225 (257)
T COG5010 225 A 225 (257)
T ss_pred c
Confidence 4
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.9e-06 Score=99.04 Aligned_cols=335 Identities=10% Similarity=-0.030 Sum_probs=197.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC------CCCHH--HHHHHHHHHH
Q 003122 417 YGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGI------EPNIV--SICTLLAACG 488 (846)
Q Consensus 417 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~~~--~~~~ll~~~~ 488 (846)
....|+++.+...++.+.......+..........+...|++++|..++......-- .+... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 444566666666555442110011111222334445566777777777776654210 11111 1122223445
Q ss_pred hcCCHHHHHHHHHHHHhCCCccC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--HHHHHHHHHHHHh
Q 003122 489 RCGRKVNIDAVLLAAEMRDIKLN----TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKV---MPD--SVTYTVLISSCCR 559 (846)
Q Consensus 489 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~li~~~~~ 559 (846)
..|+++.|...+..........+ ....+.+...+...|++++|...+++...... .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67778888777777654311111 12345566667788999998888887764211 111 2244555667778
Q ss_pred cCCHhHHHHHHHHHHHC----CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHH
Q 003122 560 LSRYSEALGFLDEMMDL----KIP---LTNQVYSSVISAYSKQGLIAEAESMFNMMKMS--GCSPD--VITYTAMLHAYN 628 (846)
Q Consensus 560 ~g~~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~ 628 (846)
.|++++|...+++.... +.. .....+..+...+...|++++|...+.+.... ...+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 89999999888877642 211 12234455666777789999999888877652 11122 344555666778
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 003122 629 TAEDWEKACALFLEMETNNI-EPDSIAC-----SALMRAFNKGGQPSKVLLVAEFMREQDITFS---DSIFFEMVLACSL 699 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~-~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 699 (846)
..|++++|...++++....- ......+ ...+..+...|+.+.|..++........... ...+..++.++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 88999999988888764210 1111111 1112344557888888888776654221111 1113456778888
Q ss_pred cCCHHHHHHHHHhhccCC-----CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 700 LRDWKTTIDLIKQMEPSF-----HVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
.|++++|...++++.... +.....++..++.++...|+.++|...+.++++.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999998888765321 1113456777888899999999999999999884
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00041 Score=76.24 Aligned_cols=211 Identities=12% Similarity=0.124 Sum_probs=133.9
Q ss_pred HHhcccCCCCHHHHHHHHH--HcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 003122 117 RWVGRFARKNFPFLIKEIT--QRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPD 194 (846)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 194 (846)
...+++....+..+++.|. +.|..++|..+.+-....+ +.+..+...+-.+|.+.|+.++|..+|+..... .|+
T Consensus 34 kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~ 109 (932)
T KOG2053|consen 34 KLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPS 109 (932)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCc
Confidence 3344556666667777664 5688888888887765443 447778888888888889999999999888763 477
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHCC-CCC
Q 003122 195 AETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTG----------NWREALKVCKKMTENG-VGP 263 (846)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----------~~~~A~~~~~~~~~~g-~~~ 263 (846)
......+..+|.|.+.+.+-.+.--+|-+. ++-+...+=+++..+...- -...|.+.++.+.+.+ ..-
T Consensus 110 eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~ 188 (932)
T KOG2053|consen 110 EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIE 188 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccc
Confidence 777777888888887765544443333332 2334454445555443321 1234666777776654 211
Q ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHH-HHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 264 DLVTHNIVLSAYKNGAQYSKALSYFE-LMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSE 332 (846)
Q Consensus 264 ~~~~~~~ll~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 332 (846)
+..-...-...+...|++++|+.++. ...+.-...+...-+.-++.+...+++.+..++-.++..++.+
T Consensus 189 s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 189 SEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 22222223344556778888888883 3333333344555566677788888888888888888877654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.2e-07 Score=99.33 Aligned_cols=131 Identities=12% Similarity=0.034 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 003122 579 PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACS 656 (846)
Q Consensus 579 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~ 656 (846)
+.+...+..|..+..+.|.+++|..+++...+. .|| ......++.++.+.+++++|+..+++..+ ..|+ .....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 334444444445555555555555555554442 233 33444444444455555555555555444 2232 33334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
.+..++.+.|++++|..+|+++...++. +...+...+.++...|+.++|...|+++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444455555555555555443322 34444444445555555555555554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-07 Score=91.75 Aligned_cols=222 Identities=15% Similarity=0.164 Sum_probs=110.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 003122 518 AIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIP-LTNQVYSSVISAYSKQG 596 (846)
Q Consensus 518 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 596 (846)
+.+++...|+++.++ .++.+.. .|.......+...+...++-+.++.-+++.+..... .+.........++...|
T Consensus 41 ~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 344555556555433 2222222 444444444443333323344444444433322222 12222223334455567
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChhHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFN----KGGQPSKVL 672 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~ 672 (846)
++++|++++... .+.......+.+|.+.++++.|.+.++.|.+ ...|.. ...+..++. -.+.+.+|.
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTCCCHHH
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchhHHHHH
Confidence 777776666432 2455555666667777777777777777765 334432 222222221 223566777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 003122 673 LVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI-ESMMKLFFKIVSS 751 (846)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 751 (846)
.+|+++.+. ..++..+.+.++.++...|+|++|.++++.+...+|. ++.++.+++.+....|+. +.+.+.+.++..
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~- 264 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ- 264 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH-
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-
Confidence 777776543 2335566666666666666666666666666655555 555666666665566654 455555555555
Q ss_pred CCCcC
Q 003122 752 GAEAN 756 (846)
Q Consensus 752 g~~p~ 756 (846)
..|+
T Consensus 265 -~~p~ 268 (290)
T PF04733_consen 265 -SNPN 268 (290)
T ss_dssp -HTTT
T ss_pred -hCCC
Confidence 4554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-06 Score=78.17 Aligned_cols=159 Identities=13% Similarity=0.036 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 621 TAMLHAYNTAEDWEKACALFLEMETNNIEPDSIAC-SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
..++-+....|+.+.|...++++.+. + |.+.-. ..-.--+-..|++++|+++|+..++.++. +..++-.-+.+.-.
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka 132 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHH
Confidence 33333444445555555555554442 2 222111 11111233345555555555555554433 44444444444445
Q ss_pred cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcC---CHHH
Q 003122 700 LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAG---NWRK 775 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g---~~~~ 775 (846)
.|+--+|++-+....+..+. |..+|..|...|...|+++.|.-.+++++- +.| ++..+-.++..++-+| +.+-
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 55555555555554444444 555555555555555555555555555555 555 3334444454422222 2333
Q ss_pred HHHHHHHHHH
Q 003122 776 YIEVLQWMED 785 (846)
Q Consensus 776 A~~~~~~~~~ 785 (846)
|.++|.+.++
T Consensus 210 arkyy~~alk 219 (289)
T KOG3060|consen 210 ARKYYERALK 219 (289)
T ss_pred HHHHHHHHHH
Confidence 4455555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-07 Score=82.47 Aligned_cols=113 Identities=9% Similarity=-0.116 Sum_probs=99.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
..+++++++.++ ..+...+.++...|++++|+..++.+....|. +..+|..++.++...|++++|+..|+++++
T Consensus 13 ~~~~~~al~~~p----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~- 86 (144)
T PRK15359 13 EDILKQLLSVDP----ETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALM- 86 (144)
T ss_pred HHHHHHHHHcCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 467777777543 33667889999999999999999999989888 889999999999999999999999999999
Q ss_pred CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 752 GAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 752 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
+.| +...+..++.+|...|++++|+..|+++++ +.|+..
T Consensus 87 -l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~ 126 (144)
T PRK15359 87 -LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADA 126 (144)
T ss_pred -cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh
Confidence 999 566999999999999999999999999987 556544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.0004 Score=71.87 Aligned_cols=78 Identities=9% Similarity=0.110 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 003122 263 PDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTS 342 (846)
Q Consensus 263 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 342 (846)
-|+.+|+.||.-+-.. .++++.+.++++... ++-....|..-|..-.+..+++..+.+|.+.+.+- .+...|.+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv----LnlDLW~l 91 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV----LNLDLWKL 91 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----hhHhHHHH
Confidence 4788888888876655 888888888888754 33355677778888888888888888888887643 35666666
Q ss_pred HHHH
Q 003122 343 IIHL 346 (846)
Q Consensus 343 li~~ 346 (846)
.++-
T Consensus 92 Yl~Y 95 (656)
T KOG1914|consen 92 YLSY 95 (656)
T ss_pred HHHH
Confidence 6653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-06 Score=94.89 Aligned_cols=239 Identities=11% Similarity=0.118 Sum_probs=173.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 579 PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-----VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI 653 (846)
Q Consensus 579 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 653 (846)
|.+...|...+....+.+++++|.+++++++.. +.+. ...|.++++....-|.-+...+.|+++.+. --...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 555667777777778888888888888888763 2111 346777777766777777788888888873 22244
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-chhhHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-SIGLLNQLLHLL 732 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~ 732 (846)
.|..|...|.+.+++++|.++++.|.+.- .-....|...+..+.+..+-+.|..+++++...-|.. ...+....+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67788888888888888888888888632 1356778888888888888888888888877666652 355666777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH-hHHHHHHHHHhcCCcc
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YG-MFRDIVSFAQTRGGAE 809 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~-~~~~l~~~~~~~~~~~ 809 (846)
++.|+-+.++.+|+..+. -.|- .-.|..+++.-.++|..+.+..+|+++.+.++.|- .. .|+..+.+-...|+.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 888888888888888887 6774 34788888888888888888888888888777653 22 4555566666677777
Q ss_pred hHHHHHHHHHHHhh
Q 003122 810 YAAIIQERIESLRM 823 (846)
Q Consensus 810 ~a~~~~~~l~~l~~ 823 (846)
..+....+..+...
T Consensus 1689 ~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1689 NVEYVKARAKEYVE 1702 (1710)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666666443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.6e-07 Score=88.90 Aligned_cols=184 Identities=12% Similarity=0.053 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HH
Q 003122 616 DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS----IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD--SI 689 (846)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 689 (846)
....+..++..+...|++++|...|+++.. ..|+. .++..++.++...|++++|+..++++++..+.... ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES--RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 466777778888888888888888888877 33432 35677778888888888888888888876553221 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHH
Q 003122 690 FFEMVLACSLL--------RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYS 761 (846)
Q Consensus 690 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 761 (846)
+..++.++... |++++|++.++++....|. +...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~-------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RL-------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HH-------HHHHH
Confidence 55566666544 5666666666666665555 2222211111100 000 00 01123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003122 762 ILLKNLLAAGNWRKYIEVLQWMEDAGI-QP-SYGMFRDIVSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 762 ~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
.++..|.+.|++++|+..++++.+..- .| .+..+..++..+...|+.++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567789999999999999999987521 12 234677888999999999999998877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00083 Score=73.98 Aligned_cols=537 Identities=13% Similarity=0.112 Sum_probs=263.5
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 172 RHNQIDKARGLFFEMQKWRCKPDAETYNALIS--AHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREA 249 (846)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 249 (846)
..+++..|......+.+.. |+.. |...+. .+.|.|+.++|..+++.....+.. |..|...+-.+|...|++++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4577888888888877632 5543 333333 357889999999888877665443 788888888899999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC----------HHHH
Q 003122 250 LKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQ----------YDKA 319 (846)
Q Consensus 250 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A 319 (846)
..+|+..... -|+......+..+|.+.+++.+-.++--++-+. .+.+...+..+++.....-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999988775 356777777788888888776544444444432 34456666677666655321 1234
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 320 IDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVF-NTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEI 398 (846)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (846)
.+.++.+.+.. +..-+..-...-...+...|++++|..++ ....+.-..-+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55555555543 11111111222233444566677777776 33333322333344445566666677777777777666
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 399 KKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIV 478 (846)
Q Consensus 399 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 478 (846)
...|.. | |...++.+ ++-+.....+|-.. .+...+..+...+..++......+....
T Consensus 253 l~k~~D-d---y~~~~~sv------------~klLe~~~~~~a~~-------~~s~~~~l~~~~ek~~~~i~~~~Rgp~L 309 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDSV------------FKLLELLNKEPAEA-------AHSLSKSLDECIEKAQKNIGSKSRGPYL 309 (932)
T ss_pred HHhCCc-c---hHHHHHHH------------HHHHHhcccccchh-------hhhhhhhHHHHHHHHHHhhcccccCcHH
Confidence 665422 1 32222221 11111110000000 0111122222222222222211010001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-------HHH
Q 003122 479 SICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV-------TYT 551 (846)
Q Consensus 479 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~ 551 (846)
...-+...+..-|+.+++...|-.- -| +...|..=+..|...=..+.-..++...... .++.. .+.
T Consensus 310 A~lel~kr~~~~gd~ee~~~~y~~k--fg---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~ 382 (932)
T KOG2053|consen 310 ARLELDKRYKLIGDSEEMLSYYFKK--FG---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHL 382 (932)
T ss_pred HHHHHHHHhcccCChHHHHHHHHHH--hC---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHH
Confidence 1111111112233333332222111 11 0001111111111111122222222222211 01110 011
Q ss_pred HHHHHHHhcCC-----HhHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHH
Q 003122 552 VLISSCCRLSR-----YSEALGFLDEMM---DLK------IPLTNQ---------VYSSVISAYSKQGLIA---EAESMF 605 (846)
Q Consensus 552 ~li~~~~~~g~-----~~~A~~~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~g~~~---~A~~~~ 605 (846)
..+......|. -+.-..++.+.. +.| .-|+.. +.+.|++.+.+.++.. +|+-++
T Consensus 383 c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LL 462 (932)
T KOG2053|consen 383 CVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLL 462 (932)
T ss_pred HHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 11111111111 112222222211 111 112221 2456777888877754 566666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003122 606 NMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF 685 (846)
Q Consensus 606 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (846)
+.-.... +.|..+--.++..|+-.|-+..|.++|+.+--..+.-|..-|. +...+...|++..+...++.....--.-
T Consensus 463 E~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~ 540 (932)
T KOG2053|consen 463 ENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSS 540 (932)
T ss_pred HHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhh
Confidence 6665542 3456667788888888899999999999887655666655543 3344566788888888877776521111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH---HHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTID---LIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIV 749 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 749 (846)
-.++-. ++....+.|.+.+..+ +-+++..+.......+=+.....++..++.++-...+..+-
T Consensus 541 ~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 541 LKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 112222 2233345555554443 33445433333233444566667777777776666665543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-05 Score=82.40 Aligned_cols=205 Identities=10% Similarity=-0.001 Sum_probs=142.8
Q ss_pred CHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 562 RYSEALGFLDEMMDLK--IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACAL 639 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 639 (846)
++.++...-+++...+ -.|+...+...+.+......-..+..++-+..+ +--...+....-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHH
Confidence 3344444444443221 234455555555544333332333333222222 11233344444455677999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 640 FLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 640 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
++.++.. .|| ...+......+.+.|+.++|.+.+++++...+. .......++.+|.+.|+.++|+.+++.....+|
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999884 454 566667788899999999999999999997665 367778889999999999999999999988888
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 719 VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
. ++..|..|+.+|...|+..+|.....+ .|.-.|+|++|+..+..+.+. .+.+.
T Consensus 406 ~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~-~~~~~ 459 (484)
T COG4783 406 E-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ-VKLGF 459 (484)
T ss_pred C-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh-ccCCc
Confidence 8 889999999999999999888666544 355689999999999998876 34443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-06 Score=79.15 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMR 660 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 660 (846)
|..+ ..+...+...|+-+.+..+....... .+.|......++....+.|++.+|+..+.+.... -++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 4444 55566666777777776666664432 1334556666777778888888888888888764 3556778888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
+|.+.|++++|...|.++++..+. ++...+.++..+...|+++.|..++.......+. +..+-.+|..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 888888888888888888876555 6667777777777888888888888777655554 55677778888888888888
Q ss_pred HHHHHHHHH
Q 003122 741 MMKLFFKIV 749 (846)
Q Consensus 741 A~~~~~~~~ 749 (846)
|..+..+-+
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 877665544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.8e-06 Score=93.06 Aligned_cols=238 Identities=13% Similarity=0.064 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003122 476 NIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLIS 555 (846)
Q Consensus 476 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 555 (846)
+...+..|+..+...+++++|..+........ +.....|..+...+.+.++++++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 34556666666666777777777666555442 22233333333355555554444433 2 222
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 556 SCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEK 635 (846)
Q Consensus 556 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (846)
......++.-...++..+.+ ...+..++..++.+|.+.|+.++|..+++++++.. +-|+.+.|.++..|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 22222333233333334444 23455677788888889999999999999998865 44688888888888888 8899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 636 ACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 636 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
|.+++.+++.. |...+++.++.++|.++....+. +...+..+.......-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------------- 217 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------------- 217 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------------
Confidence 99888888762 66667888888889888887654 4444433332221111
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHH
Q 003122 716 SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLL 768 (846)
Q Consensus 716 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 768 (846)
...--..++..+-..|...++++++..+++.+++ .+| |..+...++..|.
T Consensus 218 -~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred -ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 1111234455666677778899999999999999 888 5557778887766
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-05 Score=91.70 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=180.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003122 544 MPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL-KIPL---TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVIT 619 (846)
Q Consensus 544 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 619 (846)
+..+..|...+......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 334556777777778888889999988888763 1211 2246777777777777788888999998874 223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF-SDSIFFEMVLACS 698 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 698 (846)
|..|...|.+.+.+++|.++++.|.+. +.-....|..++..+.++.+-++|..++.++++.-++- ........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888999999999999999999999874 44556789999999999999999999999999844331 2233445556667
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HH-HHHHHHHHHHhcCCHHHH
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FN-TYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A 776 (846)
+.|+.+.+..+++.....+|. -...|+.++..-.++|+.+-++.+|++++..++.|. .. .|..++..=...|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 889999999999999988888 678999999999999999999999999999888873 33 454444444445776555
Q ss_pred HHHHHHHHH
Q 003122 777 IEVLQWMED 785 (846)
Q Consensus 777 ~~~~~~~~~ 785 (846)
..+=.++.+
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 555444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-06 Score=80.97 Aligned_cols=121 Identities=10% Similarity=-0.008 Sum_probs=94.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC-SLLRD--WKTT 706 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 706 (846)
.++.++++..+++.++.. +.|...|..++..|...|++++|+..|+++.+.+++ +...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566677777777777642 345778888888888888888888888888887765 677777777764 56666 4888
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
.++++++...+|. +..++..++..+.+.|++++|+..++++++ +.|
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~--l~~ 175 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD--LNS 175 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCC
Confidence 8888888888887 778888889999999999999999999988 666
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.66 E-value=7e-07 Score=79.85 Aligned_cols=114 Identities=10% Similarity=0.024 Sum_probs=81.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
.++++++..+. +......++..+...|++++|++.++.+...+|. +..+|..++..+...|++++|...++++++ .
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~ 80 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAA--L 80 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 45555554444 3455566667777777777777777777666665 667777888888888888888888888887 6
Q ss_pred Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 754 EA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 754 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.| +...+..++.+|...|++++|+..++++.+ +.|+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 119 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENP 119 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccc
Confidence 67 455777778888888888888888888776 344443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-06 Score=93.88 Aligned_cols=229 Identities=12% Similarity=0.087 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
+...+..|+..+...+++++|.++.+...+.. |.....|..++..+.+.++.+++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 45678889999889999999999999777753 44455666666677777776665544 2 233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
......++.-..-+...|.+ ..-+..++..++.+|-+.|+.++|..+|+++++.++. +..+.+.++..|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 33344455444444445554 2334557888899999999999999999999998866 888899999999888 9999
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH---------------------HHHHHH
Q 003122 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN---------------------TYSILL 764 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---------------------~~~~l~ 764 (846)
|++++.++... +...+++.++.+++.+++. ..|+.. ++..+-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 99988876422 4445566777777777776 666422 233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHH-hcCCcchHHHHH
Q 003122 765 KNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQ-TRGGAEYAAIIQ 815 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~-~~~~~~~a~~~~ 815 (846)
..|.+.++|++++.+++.+++. .| |......++.++. ...+|+...++.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~~kY~~~~~~ee~l 281 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYKEKYKDHSLLEDYL 281 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHHHHccCcchHHHHH
Confidence 5577778899999999999985 44 4445556655544 355565555444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-05 Score=72.58 Aligned_cols=171 Identities=10% Similarity=0.100 Sum_probs=120.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 585 YSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK 664 (846)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 664 (846)
|..++-+....|+.+.|...++.+... ++-+...-..-...+-..|++++|+++++.+++.+ +.|.+++.--+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 444555556677777788777777664 22222222222333456678888888888888754 4456677766666777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC---CHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG---RIESM 741 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A 741 (846)
.|+.-+|++-+..-++.-+. |.+.|..+..+|...|++++|.-.++++.-..|- ++..+..++..+.-.| +++-|
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 78888888877777775443 7888888888888888888888888888777776 5667777777766655 88899
Q ss_pred HHHHHHHHhcCCCc-CHHHHH
Q 003122 742 MKLFFKIVSSGAEA-NFNTYS 761 (846)
Q Consensus 742 ~~~~~~~~~~g~~p-~~~~~~ 761 (846)
.++|.++++ +.| +...+.
T Consensus 211 rkyy~~alk--l~~~~~ral~ 229 (289)
T KOG3060|consen 211 RKYYERALK--LNPKNLRALF 229 (289)
T ss_pred HHHHHHHHH--hChHhHHHHH
Confidence 999999999 888 544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.1e-05 Score=70.38 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=95.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 003122 553 LISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYN---- 628 (846)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 628 (846)
-...|+..|++++|++..... .+......=+..+.+..+++-|.+.+++|.+- .+..|.+.|..++.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 334566777777777766551 12233333344566667777777777777763 24555555555543
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-H
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTT-I 707 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~ 707 (846)
-.+.+.+|.-+|++|-+. ..|+..+.+....++...|++++|..+++.++....+ ++.++..++-+....|...++ .
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 234577777777777654 5677777777777777777777777777777776555 566665555555555554433 3
Q ss_pred HHHHhhccCCCc
Q 003122 708 DLIKQMEPSFHV 719 (846)
Q Consensus 708 ~~~~~~~~~~~~ 719 (846)
+.+.++....|.
T Consensus 263 r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 263 RNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHhcCCc
Confidence 455555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-06 Score=73.34 Aligned_cols=98 Identities=8% Similarity=-0.019 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILL 764 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 764 (846)
+.+..+.++..+...|++++|..+++.+...+|. +...|.+|+.++...|++++|+..|.++.. +.| |+.++..++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHH
Confidence 3455667777888888899999888888877777 778888999999999999999999999999 888 566899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 003122 765 KNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.+|...|+.++|.+.|+.++..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999888653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-06 Score=74.93 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=84.8
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 639 LFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 639 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
.+++++. ..|+ ......++..+...|++++|...++.+.+.++. +...+..++.++...|++++|+..++++....
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555 3443 344556667777788888888888887776554 66777777788888888888888888777666
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHH
Q 003122 718 HVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTY 760 (846)
Q Consensus 718 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 760 (846)
|. +...+..++.+|...|++++|...|+++++ +.|+...+
T Consensus 82 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 82 PD-DPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchH
Confidence 66 667777888888888888888888888888 77765543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.8e-05 Score=78.71 Aligned_cols=219 Identities=16% Similarity=0.009 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003122 597 LIAEAESMFNMMKMS--GCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLV 674 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 674 (846)
++.++...-+.+... .-.|+...+...+.+......-..+-.++-+-.+ +--........-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHH
Confidence 344444444444431 1234555555555544333322233332222222 12234455556667789999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 675 AEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 754 (846)
+..++..-|. +.......++++...++.++|.+.++++....|. ....+.+++.+|.+.|+..+|+..+.+.+. -.
T Consensus 329 l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~ 404 (484)
T COG4783 329 LQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLF--ND 404 (484)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cC
Confidence 9999986554 6666777888999999999999999999999998 477888999999999999999999999998 78
Q ss_pred c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-Hh-cCCcchHHHHHHHHHHHhhc
Q 003122 755 A-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFA-QT-RGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 755 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~-~~~~~~a~~~~~~l~~l~~~ 824 (846)
| |+..|..|+.+|..+|+..+|...+-++... .-............ .. ...+....++-.++..+...
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~--~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~~~ 475 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL--AGRLEQAIIFLMRASQQVKLGFPDWARADARIDQLRQQ 475 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 8 6779999999999999999998887776542 22222222222111 11 23445555555555555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-07 Score=58.52 Aligned_cols=32 Identities=44% Similarity=0.772 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003122 190 RCKPDAETYNALISAHGRAGQWRWAMNIFDDM 221 (846)
Q Consensus 190 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 221 (846)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666655555
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-07 Score=58.13 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=16.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 295 NIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSM 326 (846)
Q Consensus 295 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 326 (846)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.5e-06 Score=81.68 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=75.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
-+.+.+++.+|+..|.++++..+. +...|..-+.+|.+.|.++.|++-.+.....+|. ...+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 355677777788878777776655 6666667777777888888887777777777777 56778888888888888888
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEANFNTYSILL 764 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~~~~~~~l~ 764 (846)
|++.|+++++ ++|+..+|-.-+
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHH
Confidence 8888888888 888766554333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-05 Score=83.58 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
...+|+..+...++++.|+++++++.+..+ + ....++.++...++-.+|++++++.....|. +...+...+..|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~p--e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDP--E--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCC--c--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344566666777888888888888887552 2 4445777777788888888888888877777 6777888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
..++++.|..+++++++ +.|+ ..+|..|+.+|...|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999 9995 5599999999999999999998887764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00026 Score=66.66 Aligned_cols=117 Identities=17% Similarity=0.255 Sum_probs=54.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh---
Q 003122 273 SAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSV--- 349 (846)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 349 (846)
..|+..|++++|++...... +......=+.++.+..+++-|.+.+++|.+. .+..+.+.|..+|.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhc
Confidence 34455555555555554411 2222222333344555555555555555432 133344444443332
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 350 -NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKN 401 (846)
Q Consensus 350 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (846)
.+++.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++.+..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23345555555555443 2444445555555555555555555555555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.7e-06 Score=79.31 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=93.3
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCC
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGN 772 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 772 (846)
+.-+.+.+++++|+..|.++....|. ++..|-+-+.+|.+.|.++.|++-.+.++. ++|... +|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 34566789999999999999999998 888999999999999999999999999999 999654 99999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 003122 773 WRKYIEVLQWMEDAGIQPSYGMFRDIVSFA 802 (846)
Q Consensus 773 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 802 (846)
+++|++.|+++++ +.|+...|+.-+.+.
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 9999999999998 889888776655544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-05 Score=69.88 Aligned_cols=61 Identities=23% Similarity=0.193 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPD----SIACSALMRAFNKGGQPSKVLLVAEFMREQD 682 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (846)
.|..++..+. .++...+...++.+.+. .|+ ......+...+...|++++|...|+.+.+..
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 3444444432 45555555555555542 121 1222233444555555555555555555433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.6e-05 Score=65.22 Aligned_cols=98 Identities=8% Similarity=-0.034 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
......+..-+...|++++|..+|+.+...++. +...|..++.++...|++++|+..|..+....|. ++..+..++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 344556677788999999999999999988766 7888899999999999999999999999888876 78888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 003122 732 LGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~ 751 (846)
+...|+.+.|++.|+.++..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999883
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.2e-06 Score=80.42 Aligned_cols=264 Identities=13% Similarity=0.077 Sum_probs=148.8
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCC-CCCHHHHHHHHHHH
Q 003122 522 YMNVGEYEKAIALYKCMKKRKVMPDS----VTYTVLISSCCRLSRYSEALGFLDEMMD----LKI-PLTNQVYSSVISAY 592 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~ 592 (846)
+|+.|+....+.+|+..++.|. -|. .+|..|.++|.-.+++++|++++..=+. .|- .........|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 5556666666666666655542 122 2344455555555666666655432110 000 01112223344445
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH--
Q 003122 593 SKQGLIAEAESMFNMMKM----SGCS-PDVITYTAMLHAYNTAED--------------------WEKACALFLEMET-- 645 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-- 645 (846)
--.|.+++|+....+-+. .|-. .....+..|...|-..|+ ++.|.++|.+-++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665544333221 1100 113344555555543332 2334444443222
Q ss_pred --CCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc--
Q 003122 646 --NNIE-PDSIACSALMRAFNKGGQPSKVLLVAEFMRE----QDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEP-- 715 (846)
Q Consensus 646 --~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 715 (846)
.|-. .-...|..|...|.-.|+++.|+..-+.-+. .|-. .....+..++.++.-.|+++.|++.|+....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1100 0123566677777778899999876654443 3311 1234567888899999999999999887421
Q ss_pred ---CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 716 ---SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG--AEA---NFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 716 ---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.+..+.......|+..|.-..+++.|+.++.+=+... +.- ...++..|+.+|...|..++|+.+.+..++.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1222345556789999999999999999998855411 111 3448889999999999999998877765543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.6e-05 Score=68.14 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=69.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHH
Q 003122 664 KGGQPSKVLLVAEFMREQDITF--SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 739 (846)
..++...+...++.+.+..+.- .......++..+...|++++|...|+.+....+... ..+...|+.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666666666644331 123344555666677777777777776665543322 334455666677777777
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 740 SMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
+|...++.... -......+...+.+|.+.|++++|...|+++
T Consensus 103 ~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777655322 1123445556666777777777777776654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00025 Score=70.93 Aligned_cols=157 Identities=9% Similarity=0.004 Sum_probs=80.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-----------HHHHHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDS-----------IFFEMVL 695 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~~l~~ 695 (846)
+...|++++|...--..++.. ..+......-..++.-.++.+.|...|++.+..++..... .+..-+.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 445566666666555555421 1122222222223444556666666666666544321110 1111222
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCc---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcC
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHV---VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAG 771 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 771 (846)
-..+.|++.+|.+.|......+|. +...+|.+.+.+..+.|+.++|+.--+.+++ ++|... .|..-+.++...+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665544443 1234455555556666666666666666666 555332 5555555566666
Q ss_pred CHHHHHHHHHHHHHC
Q 003122 772 NWRKYIEVLQWMEDA 786 (846)
Q Consensus 772 ~~~~A~~~~~~~~~~ 786 (846)
+|++|++-++++.+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666666666543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.01 Score=59.32 Aligned_cols=254 Identities=17% Similarity=0.119 Sum_probs=176.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHH----HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYT----VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI 598 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 598 (846)
.-.|+++.|.+-|+.|.. |..|-. .|.-.--+.|..+.|..+-+..-..- +--...+.+.+...|..|++
T Consensus 131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 347899999999999986 333322 22223346788899998888877653 34456778888999999999
Q ss_pred HHHHHHHHHHHHcC-CCCCHH--HHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHH
Q 003122 599 AEAESMFNMMKMSG-CSPDVI--TYTAMLHAY---NTAEDWEKACALFLEMETNNIEPDSI-ACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 599 ~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 671 (846)
+.|+++.+.-.... +.++.. .-..|+.+- .-..+...|...-.+..+ +.||.+ .-..-..++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 99999998776532 344432 222333221 122356677777777666 677744 333456688999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIK---QMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKI 748 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 748 (846)
-.+++.+-+..+.|+.... ..+.+.|+. ++.-++ ++....|+ +......+..+-...|++..|..-.+.+
T Consensus 283 ~~ilE~aWK~ePHP~ia~l----Y~~ar~gdt--a~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 283 SKILETAWKAEPHPDIALL----YVRARSGDT--ALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhHHHHHHhcCCChHHHHH----HHHhcCCCc--HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999997776654322 234455553 333333 33333444 5556667888888899999999999999
Q ss_pred HhcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 749 VSSGAEANFNTYSILLKN-LLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 749 ~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.. ..|-...|..|+++ -.+.|+-.++...+-+.+...-.|++.
T Consensus 356 ~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 356 AR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred hh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 99 99999999999999 445599999999999988876666543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00033 Score=62.05 Aligned_cols=135 Identities=10% Similarity=0.026 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-chhhHHH
Q 003122 649 EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-SIGLLNQ 727 (846)
Q Consensus 649 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 727 (846)
-|+...-..|..++...|+..||...|++...--..-|......+..+....++...|...++++-+-+|.- ++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 444444555666666666666666666666652223355555566666666666666666666654333321 2334457
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 728 LLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 728 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++..|...|+.+.|+..|+.++. ..|+...-...+.++.++|+.++|..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 78888899999999999999999 889888777778889999988888776665544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=81.04 Aligned_cols=89 Identities=11% Similarity=-0.005 Sum_probs=56.8
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCC
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGN 772 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 772 (846)
+..+...|++++|++.++++....|. +..+|..++.+|...|++++|+..++++++ +.|+ ...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 34445556666666666666655555 455666666666666777777777777766 6663 4466666666666777
Q ss_pred HHHHHHHHHHHHH
Q 003122 773 WRKYIEVLQWMED 785 (846)
Q Consensus 773 ~~~A~~~~~~~~~ 785 (846)
+++|+..|+++++
T Consensus 86 ~~eA~~~~~~al~ 98 (356)
T PLN03088 86 YQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00064 Score=68.10 Aligned_cols=157 Identities=13% Similarity=-0.019 Sum_probs=107.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------------H
Q 003122 590 SAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIAC-------------S 656 (846)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-------------~ 656 (846)
.++.-.|+.++|...--..++.. ..+......-..++.-.++.+.|...|++.+. +.|+...- .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHH
Confidence 34556777777777766666532 11222222222334456777888888888776 44553321 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDI---TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
.-..-..+.|++.+|.+.|.+++..+| +++...|...+.+..+.|+..+|+.-.+.+...++. -+.+|..-+.++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHH
Confidence 123345678899999999999987544 445566777777888899999999988888877776 4566666677777
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003122 734 KSGRIESMMKLFFKIVS 750 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~ 750 (846)
..++|++|.+.|+++.+
T Consensus 333 ~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88899999999999988
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.8e-05 Score=69.53 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
.+..++..+...|++++|...|++.++....+. ...+..++.++.+.|++++|+..++++++..+. +...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344444444445555555555555544211111 233444444444455555555555444443322 23333333444
Q ss_pred HHhcCCH
Q 003122 697 CSLLRDW 703 (846)
Q Consensus 697 ~~~~g~~ 703 (846)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 4444433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.1e-05 Score=65.46 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSI 762 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ 762 (846)
+++..+..+...|++++|++.++.+....|.. ...++..++.++.+.|++++|...|++++. ..|+ ..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHHHH
Confidence 34455555566666666666666655444321 134555677777777777777777777776 5554 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 763 LLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 763 l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
++.+|.+.|++++|...++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777777777777777777664
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0001 Score=71.50 Aligned_cols=110 Identities=13% Similarity=0.008 Sum_probs=89.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 003122 673 LVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG---RIESMMKLFFKIV 749 (846)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 749 (846)
.-++.-+..+|. |...|..++.+|...|+...|...|.+.....|+ ++..+..++.++..+. ...+|.++|++++
T Consensus 143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 334444555666 7788888888888888888888888888877777 7778888888776542 7889999999999
Q ss_pred hcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 750 SSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 750 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
. ++| |..+...|+..+..+|++.+|...|+.|++.
T Consensus 221 ~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 221 A--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred h--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 9 999 5558888888899999999999999999986
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.3e-06 Score=65.18 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHH
Q 003122 700 LRDWKTTIDLIKQMEPSFHVV-SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~ 777 (846)
.|++++|+.+++++....|.. +...+..++.+|.+.|++++|..++++ .+ ..|.. .....++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 456666666666665555531 344555577777777777777777777 44 45533 45555577777777777777
Q ss_pred HHHHH
Q 003122 778 EVLQW 782 (846)
Q Consensus 778 ~~~~~ 782 (846)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00016 Score=75.37 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=58.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ 667 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 667 (846)
|+..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|++++.+.++. .+-+...+......|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3333444455555555555555431 332 223444444445555555555555542 12233344444444555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
++.|+.+.+++.+..|. +...|..++.+|...|+++.|+..+..++
T Consensus 250 ~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555555555554333 44455555555555555555555555444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.02 Score=58.57 Aligned_cols=140 Identities=13% Similarity=0.128 Sum_probs=78.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 003122 309 CLVKLGQYDKAIDLFHSMREKRSECLPD----IVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAA--Y 382 (846)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~ 382 (846)
.+-+.+++.+|.++|.++.+.... .|. .+.-+.++++|.. ++.+.....+.+..+. .|. ..|..+..+ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~-~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~~-s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKES-SPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FGK-SAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhc-chHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cCC-chHHHHHHHHHH
Confidence 345788899999999988764322 111 2223456666654 3555555555555543 121 233333332 2
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCC------------CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCcCHHH
Q 003122 383 ASHGMSKEALSVFNEIKKN--GLCP------------DIVSYTSLLNAYGRSQQPVKAREVFNMMRIN----NLKPNLVS 444 (846)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~ 444 (846)
.+.+.+.+|.+.+....+. +..+ |...-+..++++...|++.+++.+++++... .+.-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3678888888888777654 2221 1122244556666777777777777666543 23356666
Q ss_pred HHHHHHHHH
Q 003122 445 YSALIDAYG 453 (846)
Q Consensus 445 ~~~li~~~~ 453 (846)
|+.++-.+.
T Consensus 170 yd~~vlmls 178 (549)
T PF07079_consen 170 YDRAVLMLS 178 (549)
T ss_pred HHHHHHHHh
Confidence 666555444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.9e-05 Score=78.61 Aligned_cols=97 Identities=6% Similarity=-0.138 Sum_probs=78.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
.+..+...|++++|+..|+++++.++. +...+..++.+|...|++++|+..++++....|. +..+|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 345566778888888888888887665 6777778888888888888888888888877776 66788888999999999
Q ss_pred HHHHHHHHHHHHhcCCCcCHH
Q 003122 738 IESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~~~ 758 (846)
+++|+..|+++++ +.|+..
T Consensus 86 ~~eA~~~~~~al~--l~P~~~ 104 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDS 104 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCH
Confidence 9999999999998 888544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00023 Score=77.96 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=51.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGM 794 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 794 (846)
++.+|..++-.....|++++|...++++++ +.|+...|..++.+|...|+.++|++.++++.. +.|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 345666666666667888888888888888 777766777778888888888888888877766 4555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.4e-05 Score=61.69 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 768 (846)
+..++..+...|++++|+..++.+....|. +..++..++..+...|++++|.+.++++++ ..|+ ..++..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHH
Confidence 344455555566666666666655554444 334556666666666777777777777766 5553 346666666677
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003122 769 AAGNWRKYIEVLQWMED 785 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~ 785 (846)
..|++++|...+++..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 77777777777666654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0012 Score=58.57 Aligned_cols=129 Identities=9% Similarity=0.024 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HHH
Q 003122 683 ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FNT 759 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~ 759 (846)
+.|....-..++.++.+.|+..||...|++........+...+..++.+....++..+|...++++.+ ..|+ +-.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e--~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME--YNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh--cCCccCCCCc
Confidence 45567777889999999999999999999988776666888889999999999999999999999999 6674 336
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHH
Q 003122 760 YSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQ 815 (846)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 815 (846)
...+++.|..+|++++|...|+.+.. ..|++...-....++...|...++..-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 77788999999999999999999987 6788876666677888888666665444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.4e-05 Score=61.33 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=47.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 736 (846)
.++..+...|++++|+..++++.+..+. +...+..++.++...|++++|++.++......+. +..++..++..+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 3444444455555555555555443322 2234444455555555555555555554444443 2245556666666666
Q ss_pred CHHHHHHHHHHHHh
Q 003122 737 RIESMMKLFFKIVS 750 (846)
Q Consensus 737 ~~~~A~~~~~~~~~ 750 (846)
++++|...+.++++
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666666655
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=63.89 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=39.5
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMK 743 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 743 (846)
.|+++.|+.+++++.+..+. ++...+..++.++.+.|++++|+.++++ ....+. +..+...++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555555555555554331 1333444455555555555555555555 222222 23333344666666666666666
Q ss_pred HHHH
Q 003122 744 LFFK 747 (846)
Q Consensus 744 ~~~~ 747 (846)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=63.63 Aligned_cols=102 Identities=9% Similarity=-0.016 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITF--SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLL 729 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 729 (846)
++..++..+.+.|++++|.+.|+.+++..+.. ....+..++.++...|++++|+..++.+....|.. ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34455556666677777777777666543321 13455566667777777777777777665554442 244566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 730 HLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 730 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.++...|+.++|.+.++++++ ..|+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~--~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK--RYPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH--HCcCC
Confidence 777778888888888888877 66654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=68.13 Aligned_cols=94 Identities=4% Similarity=-0.029 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHH
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV--VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILL 764 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 764 (846)
..+..++..+...|++++|+..++++....+. ....+|..++.++...|++++|+..+++++. +.|+ ..++..++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 34455555556666666666666665433322 1234677788888888888888888888887 6774 34566666
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 003122 765 KNLL-------AAGNWRKYIEVLQWM 783 (846)
Q Consensus 765 ~~~~-------~~g~~~~A~~~~~~~ 783 (846)
.+|. +.|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 777777555555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.036 Score=59.51 Aligned_cols=380 Identities=12% Similarity=0.040 Sum_probs=200.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------ChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 003122 227 APSRSTYNNLINACGSTGNWREALKVCKKMTEN-GVGP--------DLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIR 297 (846)
Q Consensus 227 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~--------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 297 (846)
.|.+..|..+.......-.++-|+..|-+...- |++. ....-.+=+. .--|+|++|+++|-+|..++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 467777877777666666677777666555432 2210 0000111122 22488999999988886543
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003122 298 PDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNA 377 (846)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 377 (846)
..|..+.+.|++-...++++.--. +.+-..-..+|+.+.+.+.....+++|.+.+..--. . ..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 346667788888887777754211 111001245788888888888888888888766431 1 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCC
Q 003122 378 LMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGL 457 (846)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 457 (846)
.+.++.+...+++-+.+-..+. -+....-.+.+++...|.-++|.+.|-+-. .|. ..+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHH
Confidence 4566666666666555544433 355566778888888888888887765432 222 23556777788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 458 LAEAVEVFREMEQDGIEPNIVSICTLL-AACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYK 536 (846)
Q Consensus 458 ~~~A~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 536 (846)
+.+|.++-+... -|...+...-- ..+...++..+ .|..+.+.|..-+|-+++.
T Consensus 894 W~~avelaq~~~----l~qv~tliak~aaqll~~~~~~e----------------------aIe~~Rka~~~~daarll~ 947 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHME----------------------AIEKDRKAGRHLDAARLLS 947 (1189)
T ss_pred HHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHH----------------------HHHHhhhcccchhHHHHHH
Confidence 888888776543 23333221110 11111222222 2344556666666666666
Q ss_pred HHhh----CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003122 537 CMKK----RKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSG 612 (846)
Q Consensus 537 ~~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (846)
+|-+ ++.++-..--..++.++ -..++.++++-.+.....|...+... +...|-..++-++.+..-.
T Consensus 948 qmae~e~~K~~p~lr~KklYVL~Al-LvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-- 1017 (1189)
T KOG2041|consen 948 QMAEREQEKYVPYLRLKKLYVLGAL-LVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-- 1017 (1189)
T ss_pred HHhHHHhhccCCHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--
Confidence 6654 23332222111122221 12233344444444434332222111 2233333444444433322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003122 613 CSPDVITYTAMLHAYNTAEDWEKACALFLEMET-NNIEPDSIACSALMRAFNKGGQPSKVLLVAEFM 678 (846)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (846)
-.....+..|..-....|..+.|++.--.+.+ ..+-|...+|..|.-+-+....+.-.-+.|-++
T Consensus 1018 -gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1018 -GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred -hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 12234445555556677888888876555544 235566677776665555444443333333333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00021 Score=66.61 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFS--DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLH 730 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 730 (846)
..+..++..+...|++++|+..|+++++..+.+. ...+..++.++...|++++|+..++++....|. ....+..++.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455566666667777777777777665433321 234444455555555555555555554444443 3344444444
Q ss_pred HHHhcCCHHH
Q 003122 731 LLGKSGRIES 740 (846)
Q Consensus 731 ~~~~~g~~~~ 740 (846)
++...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 4444444333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.039 Score=59.29 Aligned_cols=203 Identities=16% Similarity=0.210 Sum_probs=127.3
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003122 157 CARNDIYNMMIRLHARHNQIDKARGLFFEMQK-WRCKP--------DAETYNALISAHGRAGQWRWAMNIFDDMLRAAVA 227 (846)
Q Consensus 157 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 227 (846)
.|-+..|..+...-.+.-.++-|...|-+... .|++. +...-.+=|.+| -|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 45678898888888887888888888876654 22211 111111122222 378888888888776642
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHH
Q 003122 228 PSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPD----LVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTH 303 (846)
Q Consensus 228 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 303 (846)
..+..+.+.|++-...++++.- |-..| ...|+.+...+.....+++|.+.|..-.. .
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 3466677778887766655321 11111 34677777777777788888888776432 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003122 304 NIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYA 383 (846)
Q Consensus 304 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 383 (846)
...+.++.+..++++...+.+.+.+ |....-.+.+++...|.-++|.+.|-+.- .|. ..+..|.
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-------~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv 889 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-------DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCV 889 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-------ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHH
Confidence 2456777777777777766666543 44556677888888888888877664422 122 2345566
Q ss_pred hcCCHHHHHHHHHHH
Q 003122 384 SHGMSKEALSVFNEI 398 (846)
Q Consensus 384 ~~g~~~~A~~~~~~m 398 (846)
...++.+|.++-+..
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 677777777766553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.3e-05 Score=58.13 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=52.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAG-NWRKYIEVLQWMED 785 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 785 (846)
++.+|..++..+...|++++|+..|+++++ +.|+ ...|..++.+|...| ++++|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 356788888888888999999999999988 8885 448888888888888 68889888888875
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00028 Score=65.62 Aligned_cols=91 Identities=12% Similarity=-0.005 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITF--SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
|..++..+...|++++|+..|++++...+.+ ...++..++.++...|++++|+..++++....|. ....+..++.++
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i~ 116 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 3333444444444444444444444332211 1123444444444444444444444444444333 223344444444
Q ss_pred H-------hcCCHHHHHHHHH
Q 003122 733 G-------KSGRIESMMKLFF 746 (846)
Q Consensus 733 ~-------~~g~~~~A~~~~~ 746 (846)
. ..|++++|...++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHH
Confidence 4 5556554443333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=66.83 Aligned_cols=92 Identities=12% Similarity=0.207 Sum_probs=44.6
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----H-HHH
Q 003122 624 LHAYNTA-EDWEKACALFLEMETN----NIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS-----D-SIF 690 (846)
Q Consensus 624 ~~~~~~~-g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~ 690 (846)
...|... |++++|++.|+++.+. | .+. ...+..++..+.+.|++++|+++|+++.......+ . ..+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3345555 6777777777776642 1 111 22444556666777777777777777665322111 1 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPS 716 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 716 (846)
...+.++...|+.-.|...+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23333444445555555555554433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.85 E-value=6e-05 Score=56.95 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 728 LLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 728 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++..+...|++++|++.|+++++ ..|+ ...+..++.++...|++++|+..++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566667777777777777776 6664 33666666777777777777777776665
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.5e-05 Score=56.12 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.++..+...|++++|+..++.+....|. +..+|..++.++...|++++|...|+++++ ..|+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 4678899999999999999999999988 889999999999999999999999999999 88864
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00071 Score=74.13 Aligned_cols=142 Identities=13% Similarity=0.007 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHH--hc---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CChhHHHHHHHHHH
Q 003122 614 SPDVITYTAMLHAYN--TA---EDWEKACALFLEMETNNIEPD-SIACSALMRAFNKG--------GQPSKVLLVAEFMR 679 (846)
Q Consensus 614 ~p~~~~~~~l~~~~~--~~---g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 679 (846)
+.|...|...+.+.. .. ++..+|+.+|+++++ ..|+ ...|..+..++... ++...+.+..+++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 334455555554422 11 225566666666666 4555 33444433333221 12234444444444
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 680 EQD-ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 680 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
... ...+...+..++..+...|++++|...++++...+| +...|..++..+...|+.++|.+.+++++. +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 421 122456677777777778999999999999888887 467889999999999999999999999999 999766
Q ss_pred HHH
Q 003122 759 TYS 761 (846)
Q Consensus 759 ~~~ 761 (846)
+|+
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 664
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00048 Score=58.57 Aligned_cols=93 Identities=18% Similarity=0.105 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HH-HHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FN-TYSIL 763 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~-~~~~l 763 (846)
.+..+.++...|+.++|+.+|++....+... ...++..++..|...|++++|..++++.+. ..|+ .. ....+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHH
Confidence 3445556666666666666666655443322 245666788888888888888888888887 5564 22 44445
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~ 784 (846)
+.++...|++++|+..+-...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 667888888888888776654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0031 Score=62.04 Aligned_cols=178 Identities=8% Similarity=0.003 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VIT---YTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIA 654 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~ 654 (846)
+...+...+..+...|++++|.+.|+.+.... |+ ... .-.++.+|.+.+++++|...+++.++. .|+ ...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchH
Confidence 44444445566677888888888888887752 33 222 245566777888888888888888873 333 223
Q ss_pred HHHHHHHHH--hcC---------------C---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 655 CSALMRAFN--KGG---------------Q---PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 655 ~~~l~~~~~--~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
+.....+.+ ..+ + ..+|+..|+.+++.-|. .. -..+|...+..+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~--S~-------------ya~~A~~rl~~l~ 171 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN--SQ-------------YTTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC--Ch-------------hHHHHHHHHHHHH
Confidence 333333322 111 1 13455556666554332 11 1233333222221
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 715 PSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF----NTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 715 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
..- ..--..++..|.+.|++..|+.-++.+++ -.|+. .+...+..+|.+.|..++|..+.+.+
T Consensus 172 ~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~--~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 172 DRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLR--DYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 110 00112567778888888888888888888 66643 36667778888888888888776655
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0011 Score=66.34 Aligned_cols=130 Identities=10% Similarity=0.027 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 003122 584 VYSSVISAYSKQGLIAEAESMFNMMK----MSGCSP-DVITYTAMLHAYNTAEDWEKACALFLEMET----NNI-EPDSI 653 (846)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~-~p~~~ 653 (846)
.|..|.+.|.-.|+++.|+...+.=+ +.|-.. ....+..|.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666667788888877665432 223111 145677788888888888888888777542 221 12244
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQ-----DITFSDSIFFEMVLACSLLRDWKTTIDLIKQM 713 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (846)
.+..|...|.-...+++|++++.+-+.. +..-....+++++.++...|..++|+.+.+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5667777777777888888877665431 11113456778888888888888888776654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.1e-05 Score=57.42 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCc
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG-RIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p 755 (846)
+...|..++..+...|++++|+..++++...+|. ++.+|..++.+|...| ++++|++.++++++ +.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK--LDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH--HST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH--cCc
Confidence 3456677777777777777777777777777766 6778888888888888 68888888888887 665
|
... |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.5e-05 Score=48.02 Aligned_cols=33 Identities=36% Similarity=0.661 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003122 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVAPS 229 (846)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 229 (846)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0032 Score=64.05 Aligned_cols=89 Identities=10% Similarity=0.069 Sum_probs=38.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--C-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHH
Q 003122 590 SAYSKQGLIAEAESMFNMMKMSGC--S-PD--VITYTAMLHAYNTAEDWEKACALFLEMET----NNIEPD--SIACSAL 658 (846)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~--~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~--~~~~~~l 658 (846)
..|-..|++++|.+.|.+...... . +. ...|.....+|.+. ++++|+..++++.+ .| .|+ ...+..+
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~l 120 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Confidence 345556666666666665543100 0 00 12333333344333 66666666666553 11 111 1233344
Q ss_pred HHHHHhc-CChhHHHHHHHHHHH
Q 003122 659 MRAFNKG-GQPSKVLLVAEFMRE 680 (846)
Q Consensus 659 ~~~~~~~-g~~~~A~~~~~~~~~ 680 (846)
...|... |++++|++.|+++.+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444 555555555555543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=67.03 Aligned_cols=147 Identities=13% Similarity=0.047 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 632 DWEKACALFLEMET-NNIEPD-SIACSALMRAFNK---------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL 700 (846)
Q Consensus 632 ~~~~A~~~~~~~~~-~g~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 700 (846)
..+.|..+|.+... ..+.|+ ...|..+..++.. .....+|.++.+++++.++. |+.....++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 45677788888872 125665 4455555444332 23456678888999998866 888888999999999
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH---HHHHHHHHHHhcCCHHHHH
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN---TYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~ 777 (846)
++++.|..+++++...+|+ ...+|...+..+.-.|+.++|.+.++++++ ++|--. ..-..++.|+..+ .++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 9999999999999999998 788888999999999999999999999999 999433 3333344566555 67788
Q ss_pred HHHHHH
Q 003122 778 EVLQWM 783 (846)
Q Consensus 778 ~~~~~~ 783 (846)
.+|-+-
T Consensus 428 ~~~~~~ 433 (458)
T PRK11906 428 KLYYKE 433 (458)
T ss_pred HHHhhc
Confidence 776543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.64 E-value=9.1e-05 Score=47.62 Aligned_cols=33 Identities=45% Similarity=0.726 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 232 TYNNLINACGSTGNWREALKVCKKMTENGVGPD 264 (846)
Q Consensus 232 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~ 264 (846)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.11 Score=53.56 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=59.7
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003122 592 YSKQGL-IAEAESMFNMMKMSGCSPDVITYTAMLH----AYNT---AEDWEKACALFLEMETNNIEPD----SIACSALM 659 (846)
Q Consensus 592 ~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~ 659 (846)
+-+.|. -++|+++++.+++.. +-|...-|.... .|.+ ...+.+-+.+-+-+.+.|+.|- ...-+.|.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 334444 566677776666631 223333322221 1211 1122222222222334555543 22334444
Q ss_pred HH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 660 RA--FNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 660 ~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
++ +...|++.++..+-.-+.+ +.|++.++..++.++....++++|..++..++.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 33 4456666666665555555 445666666666666666667777766666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.082 Score=52.20 Aligned_cols=223 Identities=17% Similarity=0.116 Sum_probs=142.7
Q ss_pred CCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 561 SRYSEALGFLDEMMDLKIP-LTNQVYSSVISAYSKQGLIAEAESMFNMMKMS-GCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 561 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
+....+...+......... .....+......+...+++..+...+...... ........+..+...+...+++.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555543211 12455666666677777777777777766642 123345566666666777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 639 LFLEMETNNIEPDSIACSALMR-AFNKGGQPSKVLLVAEFMREQDI--TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 639 ~~~~~~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
.+.........+ ......... .+...|+++.|...++++....+ ......+......+...++.++++..+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777777632222 122222233 67777888888888888765332 12333444444456677788888888887766
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 716 SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 716 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
..+......+..+...+...++++.|...+.+++. ..|+ ...+..+...+...|.++++...+++..+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 65553345677888888888888999999988888 7775 446666666666777788888888887763
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.001 Score=67.33 Aligned_cols=135 Identities=13% Similarity=0.081 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 618 ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK-GGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.+ .++.+.|..+|+.+++.-+. +...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 356666666666666777777777776432 1223344444443223 44555577777777664322 55666666666
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+...|+.+.|..+|++....-+... ..+|...+..-.+.|+++...++.+++.+ ..|+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhh
Confidence 6666666666666666654433311 34566666666666666666666666666 5554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=65.43 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=65.0
Q ss_pred HhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHHHHHHHHhcC
Q 003122 698 SLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSILLKNLLAAG 771 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g 771 (846)
...|++++|+..|+.+....|... ..++..++.+|...|++++|...|+++++ ..|+ ..++..++.+|...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK--NYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhHHHHHHHHHHHHcC
Confidence 445677777777777766666532 45677788888888888888888888887 6664 236666777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 003122 772 NWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 772 ~~~~A~~~~~~~~~~g~~p~~ 792 (846)
++++|..+|+++++. .|+.
T Consensus 232 ~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 232 DTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred CHHHHHHHHHHHHHH--CcCC
Confidence 888888888888763 4543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0024 Score=62.30 Aligned_cols=112 Identities=15% Similarity=0.046 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhccCCCccchhhH
Q 003122 649 EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR---DWKTTIDLIKQMEPSFHVVSIGLL 725 (846)
Q Consensus 649 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 725 (846)
+-|...|..|..+|...|+.+.|...|.++.+..++ +...+..++.++..+. ...++..+++++...+|. ++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 345677888888888888888888888888876544 6677766666654333 356788888888888777 77888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILL 764 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 764 (846)
..|+..+...|++.+|...++.|++ ..|....+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHH
Confidence 8888899999999999999999998 666544444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.039 Score=54.35 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003122 162 IYNMMIRLHARHNQIDKARGLFFEMQKWRCKPD-AETY---NALISAHGRAGQWRWAMNIFDDMLRAAVA 227 (846)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 227 (846)
.+......+.+.|++++|.+.|+++...- |+ ...- -.++.++.+.+++++|+..|++.++..+.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 33344555566677777777777766532 22 2221 33556666777777777777777665443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0029 Score=56.04 Aligned_cols=93 Identities=4% Similarity=-0.041 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 768 (846)
.+..+.-+...|++++|..+|+-+.-.++. +...|..|+.++...+++++|+..|..+.. +.+ |+..+...+.+|.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchHHHHHH
Confidence 344555566788888888888877666665 567788888888888999999999988888 666 5667888888899
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003122 769 AAGNWRKYIEVLQWMED 785 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~ 785 (846)
..|+.++|...|+.+.+
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999998888876
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00012 Score=46.62 Aligned_cols=31 Identities=42% Similarity=0.618 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003122 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVA 227 (846)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 227 (846)
+|+.++.+|++.|+++.|.++|+.|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00014 Score=46.33 Aligned_cols=31 Identities=42% Similarity=0.728 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 232 TYNNLINACGSTGNWREALKVCKKMTENGVG 262 (846)
Q Consensus 232 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~ 262 (846)
+|+.++.+|++.|+++.|.++|++|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00021 Score=54.55 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 735 SGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.|++++|++.|+++++ ..| +..++..++.+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444 444 233444444444444444444444444433
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00031 Score=53.62 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=55.4
Q ss_pred HhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 003122 698 SLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSIL 763 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 763 (846)
...|++++|++.++++....|. +..++..++.+|.+.|++++|.+++++++. ..|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 4689999999999999999998 788899999999999999999999999999 89986555443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0015 Score=64.65 Aligned_cols=94 Identities=1% Similarity=-0.018 Sum_probs=56.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITFS--DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 738 (846)
.+.|++++|+..|+.+++..|... +..++.++.+|...|++++|+..|+.+....|.. ...++..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 445666666666666665443311 2455556666666666666666666655433321 345566667777777777
Q ss_pred HHHHHHHHHHHhcCCCcCHH
Q 003122 739 ESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p~~~ 758 (846)
++|...|+++++ ..|+..
T Consensus 234 ~~A~~~~~~vi~--~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIK--KYPGTD 251 (263)
T ss_pred HHHHHHHHHHHH--HCcCCH
Confidence 777777777777 667543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0027 Score=66.59 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 003122 191 CKPDAETYNALISAHGRAGQWRWAMNIFDDMLRA--AVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTH 268 (846)
Q Consensus 191 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 268 (846)
.+.+......+++.+....+++.+..++-..... ....-..|..++++.|...|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3455556666666666666677777776666554 22222344567777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 003122 269 NIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKL 313 (846)
Q Consensus 269 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 313 (846)
|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776665555666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0042 Score=52.86 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=31.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 623 MLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
+..++-..|+.++|+.+|++.+..|+... ...+..+.+.+...|++++|+.++++...
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555666666666666665554433 22444555555566666666666655554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00066 Score=52.65 Aligned_cols=61 Identities=10% Similarity=0.189 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 729 LHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 729 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
...|...+++++|.+.++++++ +.|+ ...|...+.+|.+.|++++|.+.++++.+ ..|+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcH
Confidence 3566777888888888888887 7774 44777777778888888888888888776 345444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.02 Score=54.88 Aligned_cols=167 Identities=14% Similarity=0.075 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKMSGCS-P-DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS----IACSALMR 660 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~ 660 (846)
..+..+...|++.+|...|+.+...... | -....-.++.++.+.|++++|...+++.++. .|+. .++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 3444556667777777777776654211 1 1344556666666777777777777776652 2321 12222222
Q ss_pred HHHh-----------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHH
Q 003122 661 AFNK-----------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLL 729 (846)
Q Consensus 661 ~~~~-----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 729 (846)
++.. .+...+|+..|+.+++.-|. +.-..+|...+..+...- ..--..++
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~---------------S~y~~~A~~~l~~l~~~l----a~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN---------------SEYAEEAKKRLAELRNRL----AEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT---------------STTHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC---------------chHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 2211 12233455555555543332 122233333333222110 00112466
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcCHH----HHHHHHHHHHhcCCHHHH
Q 003122 730 HLLGKSGRIESMMKLFFKIVSSGAEANFN----TYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 730 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A 776 (846)
..|.+.|.+..|..-++.+++ -.|+.. +...++.+|.+.|..+.|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 778888888888888888887 667543 556667778888877644
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0025 Score=51.94 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=39.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChHHHHH
Q 003122 200 ALISAHGRAGQWRWAMNIFDDMLRAAV-APSRSTYNNLINACGSTG--------NWREALKVCKKMTENGVGPDLVTHNI 270 (846)
Q Consensus 200 ~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~~~~~g~~~~~~~~~~ 270 (846)
..|..++..|++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 556666666665554332 12233445555555555555555555
Q ss_pred HHHHH
Q 003122 271 VLSAY 275 (846)
Q Consensus 271 ll~~~ 275 (846)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0022 Score=52.16 Aligned_cols=81 Identities=22% Similarity=0.360 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHcCC--------CHHHHHHHHHHHHhCCCCCChHH
Q 003122 232 TYNNLINACGSTGNWREALKVCKKMTENGV-GPDLVTHNIVLSAYKNGA--------QYSKALSYFELMKGTNIRPDTTT 302 (846)
Q Consensus 232 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~ 302 (846)
+-...|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|...++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566777777999999999999999999 899999999998876643 34467788888988889999999
Q ss_pred HHHHHHHHHh
Q 003122 303 HNIVIYCLVK 312 (846)
Q Consensus 303 ~~~li~~~~~ 312 (846)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0029 Score=66.42 Aligned_cols=122 Identities=14% Similarity=0.086 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH
Q 003122 369 KPNIVSYNALMAAYASHGMSKEALSVFNEIKKN--GLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYS 446 (846)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 446 (846)
+.+......++..+....+++++..++-+.... ....-..|..++++.|.+.|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344555555666666666667777776666553 121223445577777777777777777777766777777777777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 447 ALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRC 490 (846)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 490 (846)
.|++.+.+.|++..|.++...|...+...+..|....+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776665555555555545554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0048 Score=62.45 Aligned_cols=135 Identities=15% Similarity=0.068 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHA-YNTAEDWEKACALFLEMETNNIEPDSIACSALMRA 661 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 661 (846)
.+|..+++..-+.+.++.|..+|+++.+.+ ..+...|...... |...++.+.|.++|+..++. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777777532 1223344444444 22245556677777777764 44556667777777
Q ss_pred HHhcCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 003122 662 FNKGGQPSKVLLVAEFMREQ-DITF-SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 719 (846)
+.+.|+.+.|..+|++++.. .... ....|...+..-.+.|+++.+..+.+++.+..+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 77777777777777777753 1111 2246667777777777777777777777655554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.031 Score=53.62 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003122 164 NMMIRLHARHNQIDKARGLFFEMQKWR--CKPDAETYNALISAHGRAGQWRWAMNIFDDMLRA 224 (846)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 224 (846)
-.....+.+.|++++|...|+.+.... -+--....-.++.++.+.|+++.|...++.+++.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444555566666666666555421 0111334444555666666666666666666554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00026 Score=43.94 Aligned_cols=26 Identities=42% Similarity=0.722 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003122 198 YNALISAHGRAGQWRWAMNIFDDMLR 223 (846)
Q Consensus 198 ~~~li~~~~~~g~~~~A~~~~~~~~~ 223 (846)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.016 Score=51.52 Aligned_cols=92 Identities=11% Similarity=0.046 Sum_probs=68.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 736 (846)
....-+...|++++|..+|.-+.-.++- +...+..++.++...+++++|+..|.......+. ++......+.+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 3444566788888888888888776655 6677778888888888888888888766443332 3444557788888888
Q ss_pred CHHHHHHHHHHHHh
Q 003122 737 RIESMMKLFFKIVS 750 (846)
Q Consensus 737 ~~~~A~~~~~~~~~ 750 (846)
+.+.|+..|+.+++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888888887
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=50.94 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=49.0
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHH
Q 003122 695 LACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNT 759 (846)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 759 (846)
.+|...+++++|++.++++...+|. ++..|...+.++...|++++|.+.++++++ ..|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHH
Confidence 4567777888888888887777777 777888888888888888888888888888 7775543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.11 Score=49.45 Aligned_cols=136 Identities=8% Similarity=-0.009 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ-----DITFSDSIFFEM 693 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l 693 (846)
..+.++.++.-.|.+.-...++.+.++..-+-++.....|++.-.+.|+.+.|..+|+...+. ++..........
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445666666667778888888888887654556777778888888888888888888866542 222223333344
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
..++.-++++..|...+.++...++. ++.+-|+-+-++.-.|+...|++..+.+++ ..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCcc
Confidence 44556666777777777777666665 555556665566666777777777777777 66643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=67.73 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=32.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN----TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+...|++++.+|...|++++|+..|+++++ ++|+.. +|++++.+|..+|+.++|++.++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555555 555322 355555555555555555555555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00046 Score=42.76 Aligned_cols=27 Identities=41% Similarity=0.663 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 233 YNNLINACGSTGNWREALKVCKKMTEN 259 (846)
Q Consensus 233 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 259 (846)
|++++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.012 Score=61.34 Aligned_cols=118 Identities=8% Similarity=0.047 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 668 PSKVLLVAEFMR---EQDITFSDSIFFEMVLACSL---------LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 668 ~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
.+.|+.+|.+++ +.++. ....|..++.++.. .....+|.++.+++.+.++. ++.+...++.+++-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 466888999999 54433 34455544444332 23456788889999988888 888899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 736 GRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
|+++.|...|+++.. ++||.. +|+..+....-.|+.++|.+.+++..+ +.|-
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPR 404 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCch
Confidence 999999999999999 999765 888889999999999999999999766 4553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.28 Score=48.26 Aligned_cols=226 Identities=17% Similarity=0.152 Sum_probs=152.3
Q ss_pred cCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 525 VGEYEKAIALYKCMKKRKVM-PDSVTYTVLISSCCRLSRYSEALGFLDEMMDL-KIPLTNQVYSSVISAYSKQGLIAEAE 602 (846)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 602 (846)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555666555554221 12455666666777778888887777777652 23455566667777777778888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003122 603 SMFNMMKMSGCSPDVITYTAMLH-AYNTAEDWEKACALFLEMETNNIEP----DSIACSALMRAFNKGGQPSKVLLVAEF 677 (846)
Q Consensus 603 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (846)
..+.........+ ......... .+...|++++|...+.+... ..| ....+......+...++.++|...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 8888877643222 122223333 67788888888888888865 333 233444444456677888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 678 MREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 678 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+...........+..+...+...++++.|...+.......+. ....+..+...+...|.++++...+.+.+. ..|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 268 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE--LDPD 268 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH--hCcc
Confidence 887543313566777888888888888998888888776665 344566667777777789999999999998 7776
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.018 Score=52.02 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=75.5
Q ss_pred HHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQ--DITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 738 (846)
.....|+.+.+...+++++.. |.-...... ..........++.. -..++..++..+...|++
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~---------~~W~~~~r~~l~~~-------~~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD---------EEWVEPERERLREL-------YLDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT---------STTHHHHHHHHHHH-------HHHHHHHHHHHHHHTT-H
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc---------cHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccCH
Confidence 345677888888888888873 321111000 11112222333332 234566788889999999
Q ss_pred HHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHh
Q 003122 739 ESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWME-----DAGIQPSYGM 794 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~ 794 (846)
++|.+.+++++. .+| |-..|..++.+|...|+..+|+.+|+++. +.|+.|++.+
T Consensus 79 ~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 79 EEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 999999999999 999 66799999999999999999999998874 3588888764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=51.71 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC---cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSG--AE---AN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
..+++.++.+|...|++++|+..|+++++.. .. |+ ..++..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578899999999999999999999988631 11 22 33788889999999999999999998764
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.012 Score=54.60 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 003122 247 REALKVCKKMTENGVGPDLVTHNIVLSAYK 276 (846)
Q Consensus 247 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 276 (846)
+-|++++++|...|+.||..++..|++.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG 149 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFG 149 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Confidence 445555555555555555555555555553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.012 Score=51.08 Aligned_cols=85 Identities=8% Similarity=0.095 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH----
Q 003122 685 FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN---- 758 (846)
Q Consensus 685 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---- 758 (846)
.....+..-+......|++++|++.++.+....|-. ...+-..|+.+|.+.|++++|...+++.++ +.|.+.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdY 85 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDY 85 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccH
Confidence 345556666777778888888888888887665542 355667899999999999999999999999 888533
Q ss_pred HHHHHHHHHHhcC
Q 003122 759 TYSILLKNLLAAG 771 (846)
Q Consensus 759 ~~~~l~~~~~~~g 771 (846)
+++..+-++.++.
T Consensus 86 a~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 86 AYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0096 Score=60.40 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~ 768 (846)
+..++.++.+.+++.+|+....+.+...|. ++.++..-+.+|...|+++.|+..|+++++ ++|++. +-..|+..-.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQ 336 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 344444555555555555555555555544 445555666666666666666666666666 666433 4444444433
Q ss_pred hcCCHH-HHHHHHHHHHH
Q 003122 769 AAGNWR-KYIEVLQWMED 785 (846)
Q Consensus 769 ~~g~~~-~A~~~~~~~~~ 785 (846)
+...+. ...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333322 33556666654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.037 Score=54.28 Aligned_cols=116 Identities=9% Similarity=-0.000 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHH--HHHHHHHHhcCCHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ-DITFSDSIF--FEMVLACSLLRDWKTT 706 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~g~~~~A 706 (846)
.|+..+|...++++++. .+.|..++..--++|.-.|+.+.-...+++++.. +....-..| ......+...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 35555555555555543 3444555555555555555555555555555532 111101111 1122233445555555
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
++.-++..+.++. +.-+-.++++++...|+..++.+...+
T Consensus 195 Ek~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5555555555444 323333445555555555555544433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.07 Score=56.92 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 370 PNIVSYNALMAAYASHGMSKEALSV 394 (846)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~ 394 (846)
+..+.+.+-+..|...|.+++|..+
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~i 578 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQI 578 (1081)
T ss_pred cccccccccchhhhhccchhhhhcc
Confidence 3344455555667777777776653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.16 Score=54.41 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=46.4
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHH---------HHHHHCCCCcCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHCCCC
Q 003122 406 DIVSYTSLLNAYGRSQQPVKAREVF---------NMMRINNLKPNLVSYSALIDAYGSNGLL--AEAVEVFREMEQDGIE 474 (846)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~A~~~~---------~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~g~~ 474 (846)
-...+.+-+..|...|.+++|..+- +.+... ..+...++..-++|.+..+. -+.+.-++++.+.|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 3444555566677888888775531 111111 11223344444556554443 3444555666677766
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 475 PNIVSICTLLAACGRCGRKVNIDAVL 500 (846)
Q Consensus 475 ~~~~~~~~ll~~~~~~g~~~~a~~~~ 500 (846)
|+... +...|+-.|++.+|.++|
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklF 655 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLF 655 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHH
Confidence 66543 233455556666665554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.032 Score=46.62 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=61.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-----HHHHHHHHHHHH
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-----FNTYSILLKNLL 768 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~ 768 (846)
+-++...|+++.|++.|.+.....|. .+.+||+-+.++.-.|+.++|..-+.++++ +.-+ ..+|..-+..|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale--Lag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE--LAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH--hcCccchHHHHHHHHHHHHHH
Confidence 33556667777777777776666655 566777777777777777777777777777 3221 225666666677
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 003122 769 AAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~~g 787 (846)
..|+-++|..-|+.+-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788777777777776655
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.58 Score=47.98 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 621 TAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL 700 (846)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 700 (846)
+..+.-+...|+...|.++..+.. -||...|...+.+|+..|+|++-..+... .. ++..|.-.+.+|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CCCChHHHHHHHHHC
Confidence 344445555666666666655542 35666666777777777777766554332 11 234455566666667
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
|+..+|..++.++.. ..-...|.+.|++.+|.+...+
T Consensus 251 ~~~~eA~~yI~k~~~----------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKIPD----------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhCCh----------HHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777766331 2455566677777776655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.75 Score=51.34 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=16.8
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 753 AEANFNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 753 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
..|+...+..|.+++.+. +.++-.+.+.+..
T Consensus 878 C~~e~~~~m~l~~s~~q~-~~~~~~~f~~~~e 908 (933)
T KOG2114|consen 878 CLPELRGVMDLKRSQEQK-KTDDFDEFFHQSE 908 (933)
T ss_pred cchhhhhhHHHHHHHHHh-hhhHHHHHHHhhc
Confidence 345555666666666555 4444444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.86 Score=49.17 Aligned_cols=132 Identities=12% Similarity=0.195 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 003122 336 DIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLL 414 (846)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 414 (846)
+-..|+.++.---.....+.+...+..++.. -|... -|......-.+.|..+.+.++|++.+. |++-....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4556777776555555567777777777755 45554 455566666678899999999999886 3665666666665
Q ss_pred HHHH-hcCChHHHHHHHHHHHHC-CC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003122 415 NAYG-RSQQPVKAREVFNMMRIN-NL-KPNLVSYSALIDAYGSNGLLAEAVEVFREMEQ 470 (846)
Q Consensus 415 ~~~~-~~g~~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (846)
..+. ..|+.+...+.|+..... |. --....|...|.--...+++.....++++.++
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 5544 457777777888777653 21 12344677777777778888888888888887
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.43 Score=45.54 Aligned_cols=150 Identities=12% Similarity=0.037 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003122 634 EKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQM 713 (846)
Q Consensus 634 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (846)
+.-+++|++=.. ...+.++.++.-.|.+.-.+..++++++.+++.++.....++....+.|+.+.|...++..
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 555566665443 2455667777777888889999999999887778899999999999999999999999966
Q ss_pred ccCCCccc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 714 EPSFHVVS-----IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 714 ~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 787 (846)
.+.....+ ..+..+....+.-++++.+|...+.+++. .+| |...-+.=+-++.-.|+..+|++.++.|.+.
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~--~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~- 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR--MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ- 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccc--cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 54433322 33344555666677899999999999998 777 5555555556677789999999999999874
Q ss_pred CCCCHHh
Q 003122 788 IQPSYGM 794 (846)
Q Consensus 788 ~~p~~~~ 794 (846)
.|.+.+
T Consensus 316 -~P~~~l 321 (366)
T KOG2796|consen 316 -DPRHYL 321 (366)
T ss_pred -CCccch
Confidence 454443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.025 Score=56.00 Aligned_cols=228 Identities=10% Similarity=0.025 Sum_probs=134.6
Q ss_pred HHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCC---HHHHHHHHHHHHh
Q 003122 557 CCRLSRYSEALGFLDEMMDL--KIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKM--SGCSPD---VITYTAMLHAYNT 629 (846)
Q Consensus 557 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~ 629 (846)
+....+.++|+..+.+.+.. +...-..++..+..+.++.|.+++++..--.-+. ..+... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888776643 1112234566777788888888777654332222 111111 2345555555555
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc
Q 003122 630 AEDWEKACALFLEMETN-NIEPD---SIACSALMRAFNKGGQPSKVLLVAEFMREQDI-----TFSDSIFFEMVLACSLL 700 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~-g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 700 (846)
.-++.+++.+-+.-... |..|. ......+..++.-.+.++++++.|+.+..... ...-.++..++..+.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55666666655554431 22221 22344466666667778888888888876321 12234567778888888
Q ss_pred CCHHHHHHHHHhhccCCCcc---chh------hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-CHHHHHHHHHH
Q 003122 701 RDWKTTIDLIKQMEPSFHVV---SIG------LLNQLLHLLGKSGRIESMMKLFFKIVSS----GAEA-NFNTYSILLKN 766 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~---~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~ 766 (846)
.++++|+-+..++.+.-... +.. ++..++-++...|++..|.+.-+++.+. |-.| .......++++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 88888888777764332221 111 1234556677778777777777776552 2222 22255567777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~ 784 (846)
|...|+.+.|..-|+.+.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 888888888877777664
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.011 Score=59.98 Aligned_cols=138 Identities=13% Similarity=0.000 Sum_probs=94.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQ-DITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
--...|.+.|++..|...|++++.. +.. ..-+.++......- -..++++|+.+|.+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~--------------~~~~~ee~~~~~~~--------k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYR--------------RSFDEEEQKKAEAL--------KLACHLNLAACYLKL 270 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhcc--------------ccCCHHHHHHHHHH--------HHHHhhHHHHHHHhh
Confidence 3466788888888888888887752 100 00011111111111 234678999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHhcC-CcchHH
Q 003122 736 GRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRD-IVSFAQTRG-GAEYAA 812 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~~-~~~~a~ 812 (846)
+++.+|++.-.++++ +.|+ ....+.-+.+|...|.++.|...|+++++ +.|+...... +..+-.+.. ..+...
T Consensus 271 ~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred hhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9995 55888899999999999999999999998 7887765443 333333322 233446
Q ss_pred HHHHHHHH
Q 003122 813 IIQERIES 820 (846)
Q Consensus 813 ~~~~~l~~ 820 (846)
++|.++-.
T Consensus 347 k~y~~mF~ 354 (397)
T KOG0543|consen 347 KMYANMFA 354 (397)
T ss_pred HHHHHHhh
Confidence 66665544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.021 Score=52.91 Aligned_cols=102 Identities=19% Similarity=0.334 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 003122 336 DIVTFTSIIHLYSV-----NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSY 410 (846)
Q Consensus 336 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 410 (846)
|-.+|..+++.|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 55555555555543 24555555555555555555555555555555432 2211 00000000
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCC
Q 003122 411 TSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNG 456 (846)
Q Consensus 411 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 456 (846)
.. ---.+.+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 112 ---F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 112 ---FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 00 011234556677777777777777777777777765544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.072 Score=52.91 Aligned_cols=229 Identities=14% Similarity=0.133 Sum_probs=154.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCC---HHHHHHHHHHHHh
Q 003122 522 YMNVGEYEKAIALYKCMKKRK--VMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLK--IPLT---NQVYSSVISAYSK 594 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~ 594 (846)
+....+.++|+..+.+.+.+- ...--.++..+..+.+..|.+++++.+--..+..- .... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999988877641 11123467777888899999988876554433211 1111 2345566666666
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhc
Q 003122 595 QGLIAEAESMFNMMKMS-GCSPD---VITYTAMLHAYNTAEDWEKACALFLEMETNNI---EP--DSIACSALMRAFNKG 665 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p--~~~~~~~l~~~~~~~ 665 (846)
-.++.+++.+-..-... |..|. ......|..++.-.+.++++++.|+.+...-- .| ...++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66677776666554442 22221 23445577788888899999999999886211 11 245788999999999
Q ss_pred CChhHHHHHHHHHHH----CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhhc----cC-CCccchhhHHHHHHH
Q 003122 666 GQPSKVLLVAEFMRE----QDITFS-----DSIFFEMVLACSLLRDWKTTIDLIKQME----PS-FHVVSIGLLNQLLHL 731 (846)
Q Consensus 666 g~~~~A~~~~~~~~~----~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~~~~~l~~~ 731 (846)
.++++|..+..++.+ .+.+.- ..+.+.+.-++...|.+-.|.+..++.. .. +..........++..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999988887775 333211 1234566778889999999988887652 22 222235556788999
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 003122 732 LGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~ 750 (846)
|...|+.|.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 9999999999999999865
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.26 Score=50.94 Aligned_cols=177 Identities=14% Similarity=0.075 Sum_probs=86.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 552 VLISSCCRLSRYSEALGFLDEMMDLK---IPLTNQVYSSVISAYSK---QGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
.++-+|....+++..+++.+.+...- +.....+-...+-++.+ .|+.++|++++..++...-.++..+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444666666666666666665431 11122222233444555 6777777777777555444566667666666
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 626 AYNT---------AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 626 ~~~~---------~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
.|-. ....++|+..|.+.-+ +.||...=..++..+.-.|...+...-.+++. ..+...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-----------~~l~~l 292 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIG-----------VKLSSL 292 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHH-----------HHHHHH
Confidence 5531 1235666666666655 34543322222222333333222111111110 001111
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+.+.|. ..+..+.-.+.+++.++.-.|+.++|.+.++++.+ +.|.
T Consensus 293 lg~kg~-------------~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~--l~~~ 337 (374)
T PF13281_consen 293 LGRKGS-------------LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK--LKPP 337 (374)
T ss_pred HHhhcc-------------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCc
Confidence 112221 11111322345777777788888888888888887 5553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.79 Score=46.42 Aligned_cols=319 Identities=17% Similarity=0.145 Sum_probs=181.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--H
Q 003122 130 LIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHAR--HNQIDKARGLFFEMQKWRCKPDAETYNALISA--H 205 (846)
Q Consensus 130 l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~ 205 (846)
+++.+.. .+..+...|..-++.. .|.+|..++.. .|+-..|+++-.+..+. +..|......|+.+ -
T Consensus 61 lv~~iw~--sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaa 130 (531)
T COG3898 61 LVRSIWE--SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAA 130 (531)
T ss_pred HHHHHHh--CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHH
Confidence 4444433 2445666666655443 45566555553 57888888887765531 23454444444433 2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHH
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKAL 285 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 285 (846)
.-.|+++.|.+-|+.|... ++....-...|.-...+.|..+.|.+.-++..+.-.. -...+...+...|..|+++.|+
T Consensus 131 l~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred HhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 3468999999999999762 1111122233333345778888888887777665332 3467778888888999999999
Q ss_pred HHHHHHHhCC-CCCChHHH--HHHHHHH---HhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 286 SYFELMKGTN-IRPDTTTH--NIVIYCL---VKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGV 359 (846)
Q Consensus 286 ~~~~~m~~~~-~~~~~~~~--~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 359 (846)
++.+.-+... +.++..-- ..|+.+- .-.-+...|.+.-.+..+..+++.|-.+ .-...+.+.|+..++-.+
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav---~AAralf~d~~~rKg~~i 285 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAV---VAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHH---HHHHHHHhccchhhhhhH
Confidence 9888766443 23332211 1122111 1123455666666666555544444322 234567777888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003122 360 FNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKN-GLCP-DIVSYTSLLNAYGRSQQPVKAREVFNMMRINN 437 (846)
Q Consensus 360 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 437 (846)
++.+-+....|++. ++..+.+.|+. +..-+++..+. .++| +..+...+...-...|++..|..--+.....
T Consensus 286 lE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 286 LETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred HHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 88877764444432 22223444443 33333332211 1223 3445555666667777777776655555443
Q ss_pred CCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHC
Q 003122 438 LKPNLVSYSALIDAYGS-NGLLAEAVEVFREMEQD 471 (846)
Q Consensus 438 ~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~ 471 (846)
.|....|..|.+.-.. .|+-.++...+.+.++.
T Consensus 359 -~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 -APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5666666666665443 47777777777777664
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.065 Score=58.53 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------HH----hcCChhHH
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA------FN----KGGQPSKV 671 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~------~~----~~g~~~~A 671 (846)
.-+|.-++.. ++| ....++....-.|+-+.+++++.+..+.+---.+.+-..|+.- ++ .....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555553 233 3445666666778888888888887653211112222222211 11 13345667
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc---CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP---SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKI 748 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 748 (846)
.++++.+.+.-|+ +.-.....+..+...|+.++|++.++++.. .-+.....++..+++.+.-.++|++|.+.|.++
T Consensus 253 ~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 253 EELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 7777777765443 344445556667777777777777776432 222333444556667777777777777777777
Q ss_pred HhcCCCc-CHHHHHHHHHH-HHhcCCH-------HHHHHHHHHH
Q 003122 749 VSSGAEA-NFNTYSILLKN-LLAAGNW-------RKYIEVLQWM 783 (846)
Q Consensus 749 ~~~g~~p-~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~ 783 (846)
.+ ... ....|..+..+ |...|+. ++|.++++++
T Consensus 332 ~~--~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 332 LK--ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred Hh--ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 76 444 23344444333 6666766 5555555444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.016 Score=55.98 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.+..|+....+.|+.++|...|+++++
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333444444444444444444444444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.02 Score=55.27 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSIL 763 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l 763 (846)
.+..+..+...|++.+|.+.|.......|.. .+.++..|+.++...|++++|...|..+.+ -.|+ +..+..|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k--~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK--DYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH--hCCCCCCChHHHHHH
Confidence 3444555666777777777777766665543 356778899999999999999999999998 5563 3588888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 764 LKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
+.+..+.|+.++|..+|+++.+. .|+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~--YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR--YPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence 99999999999999999999874 4544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.26 Score=48.22 Aligned_cols=155 Identities=8% Similarity=0.025 Sum_probs=97.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
.....|+..+|...|+.+....+. +......++.+|...|+.+.|..++..++.............-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455677777777777777776555 4555667777777788888888877777655544332222223344444444444
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCC-cchHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PSYGMFRDIVSFAQTRGG-AEYAAIIQER 817 (846)
Q Consensus 741 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 817 (846)
...+-.++- .+| |...-..++..|...|+.++|++.+=.++++... .|...-+.++.++.--|. .+.+..+.++
T Consensus 222 ~~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 222 IQDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 444444443 478 6668888899999999999999887777654322 244556677777666553 3445544444
Q ss_pred HH
Q 003122 818 IE 819 (846)
Q Consensus 818 l~ 819 (846)
+-
T Consensus 299 L~ 300 (304)
T COG3118 299 LY 300 (304)
T ss_pred HH
Confidence 43
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.017 Score=60.19 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD--SIFFEMVLACSLLRDWKTTIDLIKQMEPS 716 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 716 (846)
...++.+..+|.+.|++++|+..|+++++.++.... ..|+.++.+|...|+.++|++.++++...
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556777777777777777777777777775544211 23666666666666666666666666543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.36 Score=45.51 Aligned_cols=204 Identities=14% Similarity=0.085 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003122 514 AYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYS 593 (846)
Q Consensus 514 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 593 (846)
.|.....+|...+++++|...+.+..+- ...+...| -....++.|.-+.+++.+. +.-...|.--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444555666777777777766665531 01111111 1122345555555555542 223334555566677
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC---HHHHHHHHHHHHhcCCh
Q 003122 594 KQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNN--IEPD---SIACSALMRAFNKGGQP 668 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~---~~~~~~l~~~~~~~g~~ 668 (846)
.+|..+-|-..+++.-+. ....+.++|+++|++...-= -..+ ...+....+.+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777777666665441 12345566666666654310 0011 12344445566777777
Q ss_pred hHHHHHHHHHHHCCC----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh---ccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 669 SKVLLVAEFMREQDI----TFS-DSIFFEMVLACSLLRDWKTTIDLIKQM---EPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 669 ~~A~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
++|-..+.+-..... -++ -..+...+.++.-..++..|...++.- +.-....+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 777665554332110 011 122344444555566777777777652 2222222344555666655 4556555
Q ss_pred HHHH
Q 003122 741 MMKL 744 (846)
Q Consensus 741 A~~~ 744 (846)
+..+
T Consensus 246 ~~kv 249 (308)
T KOG1585|consen 246 IKKV 249 (308)
T ss_pred HHHH
Confidence 5443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.68 Score=44.58 Aligned_cols=175 Identities=11% Similarity=0.054 Sum_probs=104.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 003122 589 ISAYSKQGLIAEAESMFNMMKMSGC-SP-DVITYTAMLHAYNTAEDWEKACALFLEMETN-NIEPDSIACSALMRAFNKG 665 (846)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~ 665 (846)
+..-.+.|++++|.+.|+.+..... .| ...+.-.++.++.+.+++++|+..+++.+.. +-.|| ..|...+.+++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHh
Confidence 4445677888888888888886421 11 2455666677788888999999998888873 22333 3444444444421
Q ss_pred -------CCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 666 -------GQP---SKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 666 -------g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
.+. .+|+.-|+.+++.-|. ... -..|...+..+... -..-=..++..|.+.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPn--S~Y-------------a~dA~~~i~~~~d~----LA~~Em~IaryY~kr 180 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPN--SRY-------------APDAKARIVKLNDA----LAGHEMAIARYYLKR 180 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCC--Ccc-------------hhhHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 122 2344444444443221 111 11121111111100 001113678889999
Q ss_pred CCHHHHHHHHHHHHhcCCCcCH-H---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 736 GRIESMMKLFFKIVSSGAEANF-N---TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~~-~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
|.+..|..-++++++ -.|+. . .+..|..+|.+.|..++|...-+-+..
T Consensus 181 ~~~~AA~nR~~~v~e--~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 181 GAYVAAINRFEEVLE--NYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cChHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999999999999999 56642 2 555666779999999999887666544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.12 Score=56.46 Aligned_cols=169 Identities=17% Similarity=0.116 Sum_probs=114.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH------H----hcCCHHH
Q 003122 566 ALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAY------N----TAEDWEK 635 (846)
Q Consensus 566 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~------~----~~g~~~~ 635 (846)
...+|.-++.. +||. +..++....-.||-+.+++.+.+..+.+---.+..--.|+.-| + ...+.+.
T Consensus 176 G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455556654 4553 4456666777899999999999887743111222222222111 1 2457889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 636 ACALFLEMETNNIEPDSIACSA-LMRAFNKGGQPSKVLLVAEFMREQD---ITFSDSIFFEMVLACSLLRDWKTTIDLIK 711 (846)
Q Consensus 636 A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 711 (846)
|.++++.+.+ .-|+...|.. -.+.+...|+.++|++.|+++.... .+.....+..++..+...++|++|.+.+.
T Consensus 252 a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 9999999998 4688766654 3556778999999999999877421 12244567788899999999999999999
Q ss_pred hhccCCCccchhhHHHHH-HHHHhcCCHHHH
Q 003122 712 QMEPSFHVVSIGLLNQLL-HLLGKSGRIESM 741 (846)
Q Consensus 712 ~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A 741 (846)
.+.+.... +..+|..+. .++...|+.+.+
T Consensus 330 ~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 330 RLLKESKW-SKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred HHHhcccc-HHHHHHHHHHHHHHhhccchhh
Confidence 99887665 555554444 445567888333
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.007 Score=47.55 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
..+++.++.+|...|++++|++.++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677888888888888888888888876
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.2 Score=45.68 Aligned_cols=79 Identities=9% Similarity=0.187 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 484 LAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRY 563 (846)
Q Consensus 484 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 563 (846)
+..|...|+...|.++-.+.. -|+...|-..+.+++..+++++-..+-.. + -.+..|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCH
Confidence 344444555555555443332 23455555555555555555544433221 1 1223455555555555555
Q ss_pred hHHHHHHHH
Q 003122 564 SEALGFLDE 572 (846)
Q Consensus 564 ~~A~~~~~~ 572 (846)
.+|..+...
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.49 E-value=1.3 Score=45.79 Aligned_cols=136 Identities=12% Similarity=0.089 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
.+|..++..-.+..-.+.|..+|-++.+.++. ++..+++.++ -+...|+...|-.+++.-....++.. ..-+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~-E~~~~~d~~ta~~ifelGl~~f~d~~-~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFI-EYYATGDRATAYNIFELGLLKFPDST-LYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHH-HHHhcCCcchHHHHHHHHHHhCCCch-HHHHHHHHH
Confidence 34556666666666788889999998887743 2333333333 35567888888888888777777633 333456666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEAN--FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
+...++-+.|+.+|++++++ +..+ -..|..++.-=.+-|+...|..+=++|.+ +.|...
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen 536 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQEN 536 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHh
Confidence 77788889999999987763 3333 34788888877888988888888888877 345443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0074 Score=40.96 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHH
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILL 764 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 764 (846)
.+|..++..|...|++++|+++|+++++ ..|+ ...|..|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 4567788888888888888888888888 7884 44666554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.9 Score=46.70 Aligned_cols=420 Identities=8% Similarity=0.022 Sum_probs=222.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003122 299 DTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNAL 378 (846)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 378 (846)
+...|..++.---...+.+.+...+..++.+-|- -...|......-.+.|..+.+.++|++.+.. ++-....|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl---~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPL---CYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 4556666665555555567777788888765433 3446777778888999999999999999874 55555566655
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHC-CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH--
Q 003122 379 MAAYA-SHGMSKEALSVFNEIKKN-GLC-PDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYG-- 453 (846)
Q Consensus 379 i~~~~-~~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-- 453 (846)
+..++ ..|+.+.....|+..... |.. .....|...|..-..++++.....+++++++. ....++..-.-|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHH
Confidence 55443 467888888888887763 322 23456777787778889999999999998864 1222222222221
Q ss_pred -hC------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 003122 454 -SN------GLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVG 526 (846)
Q Consensus 454 -~~------g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 526 (846)
+. ...+++.++-....... .....+ +.+..+=..+...+. ..+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~--~~~e~~~~~v~~~~~---------------~s~ 245 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERS-------------KITHSQ--EPLEELEIGVKDSTD---------------PSK 245 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhh-------------hccccc--ChhHHHHHHHhhccC---------------ccc
Confidence 11 11222222211111100 000000 000000000000000 011
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHH
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL-------KIPLTNQVYSSVISAYSKQGLIA 599 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~ 599 (846)
.++++.....+... ..-..+-......+....++.-++. -..++..+|..-++.-...|+.+
T Consensus 246 ~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~ 314 (577)
T KOG1258|consen 246 SLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFS 314 (577)
T ss_pred hhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHH
Confidence 11222211111110 0001111112222333333333321 11234456777777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003122 600 EAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (846)
.+.-+|+...-. |.-=...|--.+.-....|+.+-|..++.+..+--++..+.+-..-....-..|+++.|..+++...
T Consensus 315 ~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 315 RVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 888888777641 1111344555555555557777777777766654233333333222333445678888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHhhccCC--CccchhhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCC
Q 003122 680 EQDITFSDSIFFEMVLACSLLRDWKTTI---DLIKQMEPSF--HVVSIGLLNQLLHL-LGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 680 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
+.-+. -...-..-+....+.|+.+.+. +++....+.. +......+...++. +.-.++.+.|..++.++.+ .
T Consensus 394 ~e~pg-~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~ 470 (577)
T KOG1258|consen 394 SEYPG-LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEAND--I 470 (577)
T ss_pred hhCCc-hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--c
Confidence 64322 1222233344556777777777 4444443222 11122223333333 3345799999999999999 8
Q ss_pred CcC-HHHHHHHHHHHHhcC
Q 003122 754 EAN-FNTYSILLKNLLAAG 771 (846)
Q Consensus 754 ~p~-~~~~~~l~~~~~~~g 771 (846)
.|+ -..|..+++....++
T Consensus 471 ~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 471 LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CCccHHHHHHHHHHHHhCC
Confidence 885 457888888855554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.23 Score=49.02 Aligned_cols=160 Identities=8% Similarity=-0.056 Sum_probs=112.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCh
Q 003122 593 SKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI----ACSALMRAFNKGGQP 668 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~ 668 (846)
-..|++.+|-..++++++. .+.|...+.---++|.-.|+.+.-...+++++.. -.+|.. .-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4578889998999998875 4667888888888899999999999999998853 244432 223344466789999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhh---HHHHHHHHHhcCCHHHHHHHH
Q 003122 669 SKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGL---LNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 669 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~ 745 (846)
++|.+..+++.+.+.. |.-.......++...|+..++.++..+-...=......+ |-..+-.+.+.+.++.|.++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999999997754 666667788889999999999999887653322211111 112233344557888888888
Q ss_pred HHHHhcCCCc
Q 003122 746 FKIVSSGAEA 755 (846)
Q Consensus 746 ~~~~~~g~~p 755 (846)
++=+-..++.
T Consensus 271 D~ei~k~l~k 280 (491)
T KOG2610|consen 271 DREIWKRLEK 280 (491)
T ss_pred HHHHHHHhhc
Confidence 7755333444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.29 Score=50.59 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChh
Q 003122 599 AEAESMFNMMKMSGCSPD---VITYTAMLHAYNTAEDWEKACALFLEMETNN---IEPDSIACSALMRAFNK---GGQPS 669 (846)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~~~l~~~~~~---~g~~~ 669 (846)
++..+.+..+...=-.|+ ..+...++-.|....+|+.-+++.+.+.... +.-...+-..++-++.+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 444445555554311222 2333455557999999999999999998631 11122333345556777 99999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH-
Q 003122 670 KVLLVAEFMREQDITFSDSIFFEMVLACSL---------LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIE- 739 (846)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~- 739 (846)
+|++++..++...-.++++++..++.+|-. ...+++|+..|.+.-...+..-.+ .+++..+...|.-.
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G--IN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG--INAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch--HHHHHHHHHcCCccc
Confidence 999999997765566789999999987653 224788999999987776543333 24555555555322
Q ss_pred ---HHHHHHHH----HHhcCCC-c--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 740 ---SMMKLFFK----IVSSGAE-A--NFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 740 ---~A~~~~~~----~~~~g~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+..++--+ +.++|.. + |.-.+-.++.+..-.|++++|.+.+++|...
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 33333311 1233332 2 3334556667788899999999999999864
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.37 E-value=2.2 Score=47.19 Aligned_cols=108 Identities=10% Similarity=0.104 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
+.+--+.-+...|+..+|.++-.+.. -|+...|..-+.++...++|++-+++-+...+ +.-|.-...+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence 33334445666777777777666553 34677777777788888888887777776652 223456677788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
+.|+.++|.+++-++-. +. ....+|.+.|++.+|.+.-
T Consensus 756 ~~~n~~EA~KYiprv~~--l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG--LQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC--hH-------HHHHHHHHhccHHHHHHHH
Confidence 88888888888777544 32 3456677777777777643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0035 Score=39.53 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=26.5
Q ss_pred HHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHH
Q 003122 745 FFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 745 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 777 (846)
|+++++ ++| |..+|+.|+.+|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 678888 889 5669999999999999999886
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.17 Score=52.98 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=84.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSI-ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTI 707 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 707 (846)
+..+..+-+++-.++++ +.||-. .|..|. --......+|.++++++++.+-. .+. -.......|.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~lg-~s~~~~~~g~----- 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----SLG-KSQFLQHHGH----- 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----hhc-hhhhhhcccc-----
Confidence 34556666666677766 566633 333222 23345678888888888764311 110 0000011111
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--CH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 708 DLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA--NF-NTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
..+.....+-.+-+.+-..|+.++.+.|+.++|++.++++++ ..| |. .+...|+.+|...+.+.++..++.+-.
T Consensus 246 -~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk--e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 -FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK--EFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred -hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh--hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 111111122222334446788888899999999999999987 556 22 388889999999999999999988875
Q ss_pred HC
Q 003122 785 DA 786 (846)
Q Consensus 785 ~~ 786 (846)
+.
T Consensus 323 Di 324 (539)
T PF04184_consen 323 DI 324 (539)
T ss_pred cc
Confidence 53
|
The molecular function of this protein is uncertain. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.088 Score=47.79 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=61.6
Q ss_pred hcCCHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCH
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVS----IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNW 773 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 773 (846)
..|++++|..-|..+....|..+ ..+|.+-+.++.+.++++.|+....++++ +.|. ..+...-+.+|.+..++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhhhhH
Confidence 34444444444444433333222 33466677788888999999999999998 8884 44666667788889999
Q ss_pred HHHHHHHHHHHHCCCCCCHH
Q 003122 774 RKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 774 ~~A~~~~~~~~~~g~~p~~~ 793 (846)
++|++-|+++.+. .|...
T Consensus 185 eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 185 EEALEDYKKILES--DPSRR 202 (271)
T ss_pred HHHHHHHHHHHHh--CcchH
Confidence 9999999999873 45443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.37 Score=50.62 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCccchhhHHHHHHHHH-
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS-FHVVSIGLLNQLLHLLG- 733 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~- 733 (846)
.|..++.+.|+.+||++.++++++..+. ....+...++.++...+.+.++..++.+.... .|..-..+|...+-...
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 3444455555555555555555543222 12234444555555555555555555554322 12211222222111111
Q ss_pred -----------hcC---CHHHHHHHHHHHHhcCCCcCHHHHH
Q 003122 734 -----------KSG---RIESMMKLFFKIVSSGAEANFNTYS 761 (846)
Q Consensus 734 -----------~~g---~~~~A~~~~~~~~~~g~~p~~~~~~ 761 (846)
+.| --..|.+.+.++++ .+|.+.-|.
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~YL 383 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPKYL 383 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCchhh
Confidence 111 12346788888888 788766653
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.06 Score=45.07 Aligned_cols=92 Identities=16% Similarity=0.010 Sum_probs=52.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ-DITFSDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 704 (846)
++...|+.+.|++.|.+.+.. .+.....|+.-..++.-+|+.++|++-++++++. |.+ ...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trt---------------- 113 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRT---------------- 113 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chH----------------
Confidence 445556666666666666652 2234556666666666666666666666666652 222 110
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 705 TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
.-.+|..-+..|...|+-+.|+.-|+.+.+.
T Consensus 114 ----------------acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 114 ----------------ACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred ----------------HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 1123445555667777777777777777763
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.09 E-value=2.1 Score=44.30 Aligned_cols=137 Identities=10% Similarity=0.081 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNN-IEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVL 695 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 695 (846)
...|..+++.-.+..-.+.|..+|-++.+.| +.++..++++++.-+ ..|++.-|..+|+--+..-++ +.........
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPD-STLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 4567777777777777888888998888877 567777888888755 467888888888877764332 3444455566
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHV-VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.+...++-..|..+|+...+.-.. .-..+|..++.--..-|++..+..+=+++.+ ..|.-
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcH
Confidence 677888888888888854322111 1245677777777778888888888888888 77743
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.34 Score=43.57 Aligned_cols=70 Identities=14% Similarity=0.282 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003122 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLA-----EGLKPNIVS 374 (846)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 374 (846)
+...++..+...|++++|..+.+.+....|. |...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445566666777777777777777766654 666777777777777777777777766643 266665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.37 Score=44.53 Aligned_cols=177 Identities=16% Similarity=0.084 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
|-..-|.--|.+.+. +.|+ +..||.|+--+...|+++.|.+.|+...+. .|. ..+...-+-++.-.|++.-|.+
T Consensus 79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHH
Confidence 344444444444444 3454 556666666666667777777777776663 332 2222222223444566776666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLI-KQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG 752 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 752 (846)
-+.+.-+.++. |+ .-...+..-...-+..+|..-+ ++.... +-..|...+-.|.- |++.+ +.+++++..
T Consensus 155 d~~~fYQ~D~~-DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a-- 224 (297)
T COG4785 155 DLLAFYQDDPN-DP-FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKISE-ETLMERLKA-- 224 (297)
T ss_pred HHHHHHhcCCC-Ch-HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhccH-HHHHHHHHh--
Confidence 66555554432 11 1111111122333445554332 333222 11223322222221 11111 112223222
Q ss_pred CCcC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 753 AEAN--------FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 753 ~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
...| ..+|..|+.-|...|..++|..+|+-++..
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1111 137888899999999999999999877653
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.96 E-value=3.8 Score=46.10 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc---C-CHHHHHHHHHHHHHCC
Q 003122 737 RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAA---G-NWRKYIEVLQWMEDAG 787 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g-~~~~A~~~~~~~~~~g 787 (846)
+.+.+...+.++.. .-+......|+++|... + .++.|...|.++.+.+
T Consensus 454 ~~~~~~~~~~~a~~---~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA---QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred chhHHHHHHHHHHh---ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 44455555555443 22344555555554433 2 2556666666665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.7 Score=41.94 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 343 IIHLYSVNGQIENCKGVFNTMLAEGLKPN---IVSYNALMAAYASHGMSKEALSVFNEIKK 400 (846)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (846)
+.+.|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|...|..++|...-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445566666666666666666654 1111 12344555666666666666665554444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.7 Score=41.23 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 003122 410 YTSLLNAYGRSQQPVKAREVFNMMR 434 (846)
Q Consensus 410 ~~~ll~~~~~~g~~~~A~~~~~~m~ 434 (846)
|.--..+|-...++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3334445566666666666555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1 Score=44.25 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=77.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 706 (846)
....|++.+|..+|....+.. +-+...-..++.+|...|+.+.|..++..+-.............-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 445666777777777666531 2224455566667777777777777776654322111111111223334444444333
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCC
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGN 772 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 772 (846)
.++-.++. .+|. +...-..++..+...|+.++|.+.+-.++++...- |...-..|+..+..-|.
T Consensus 223 ~~l~~~~a-adPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 QDLQRRLA-ADPD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 33333332 3343 45556677777777888888877777777643322 44455556666555553
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.63 E-value=5.6 Score=45.58 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHH-hCCCCCC--hHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 003122 281 YSKALSYFELMK-GTNIRPD--TTTHNIVIYCLV-KLGQYDKAIDLFHSMR 327 (846)
Q Consensus 281 ~~~A~~~~~~m~-~~~~~~~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~ 327 (846)
+..|++.++-+. +..+.|. ..++-.++..+. ...++++|+..+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~ 87 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAI 87 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555544 2222221 223333444443 3455555555555544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.53 E-value=5.6 Score=44.86 Aligned_cols=184 Identities=11% Similarity=0.124 Sum_probs=116.8
Q ss_pred cCCCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003122 122 FARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCAR--NDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYN 199 (846)
Q Consensus 122 ~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (846)
+.+.++...+..+.+...+..|+.+-+.-. ..++ ..+.....+-+.+.|++++|..-|-+.... +.| .
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQH----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 556667777888888888888887765321 1111 123344455666889999998888766542 122 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCC
Q 003122 200 ALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGA 279 (846)
Q Consensus 200 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 279 (846)
.+|.-|....+...-...++.+.+.|+. +..--..|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 3455566666677777788888888765 44445778889999998887766665543 2221 112345566667777
Q ss_pred CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 280 QYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMR 327 (846)
Q Consensus 280 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 327 (846)
-.++|..+-..... +......++ -..|++++|++.+..+.
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 77777766665543 233333333 35688888888887763
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.39 Score=41.88 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETNNIEP---DSIACSALMRAFNKGGQPSKVLLVAEFMREQDIT 684 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (846)
+..-+....+.|++++|++.|+.+... .+. ...+-..|+.+|.+.|++++|+..+++.++..|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 333444455678888888888888874 121 2445667788888888888888888888886654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=5.6 Score=44.27 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 003122 684 TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSIL 763 (846)
Q Consensus 684 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 763 (846)
....-+...-+.-+...|+..+|.++-++..-. +-..|-.-+.++...+++++-++..+... .+.-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fkip----dKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIP----DKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcCCc----chhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 334445555666677778888888877765422 44566667777888888887655544322 13445556
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~ 783 (846)
..++.++|+.+||.+++-+.
T Consensus 751 Ve~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHhcccHHHHhhhhhcc
Confidence 67788888888888887665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.41 E-value=4.9 Score=47.17 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=111.8
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
.+.++.+-+-++++..+. +++..-|. |+. ..|++++|+.-+.++- ...|.-..+.-.++|.+.+|+.
T Consensus 863 SqkDPkEyLP~L~el~~m--~~~~rkF~--ID~--~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ 929 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKM--ETLLRKFK--IDD--YLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALA 929 (1265)
T ss_pred hccChHHHHHHHHHHhhc--hhhhhhee--HHH--HHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhh
Confidence 345555555566655532 22222221 222 2355666666555443 1123333344456677777766
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 639 LFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 639 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
++..=.+ .-...|.+...-+...+.+++|.-.|+..-+. ...+.+|...|+|.+|+.+..++.....
T Consensus 930 ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~d 996 (1265)
T KOG1920|consen 930 LYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKD 996 (1265)
T ss_pred eeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHH
Confidence 5432221 11335566666777788888888888866431 2345678889999999999988765433
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 719 VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
. ....-..|..-+...++.-+|-++..+... +|.- -...|++.-.|++|+.+-...
T Consensus 997 e-~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 997 E-LVILAEELVSRLVEQRKHYEAAKILLEYLS---DPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred H-HHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 3 222235677778888888888888877764 3321 233467777888888765544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=2.8 Score=39.07 Aligned_cols=176 Identities=12% Similarity=0.057 Sum_probs=106.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
|-..|-+.-|.--|.+... +.|+ +.+||.|+--+...|+++.|.+.|+...+.++.-+ .+...-+.++.-.|+++-
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHh
Confidence 4445666667767777776 7787 66888888888999999999999999999887633 333344445667789999
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcC--CHHHHHHHH-HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG--RIESMMKLF-FKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~-~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
|.+-+.+....+|... |. .++.|.... +..+|..-+ +++.. ...+.--|+...-.+ |+..+ ..++++
T Consensus 152 Aq~d~~~fYQ~D~~DP---fR-~LWLYl~E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL---gkiS~-e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDDPNDP---FR-SLWLYLNEQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL---GKISE-ETLMER 221 (297)
T ss_pred hHHHHHHHHhcCCCCh---HH-HHHHHHHHhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH---hhccH-HHHHHH
Confidence 9988887776766633 22 233443322 555555444 44433 333333343322222 22211 223444
Q ss_pred HHHCCCCCCHH-------hHHHHHHHHHhcCCcchHHHHHH
Q 003122 783 MEDAGIQPSYG-------MFRDIVSFAQTRGGAEYAAIIQE 816 (846)
Q Consensus 783 ~~~~g~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 816 (846)
+.+ +-..+.. +|.-++..+...|+...|..+++
T Consensus 222 ~~a-~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 222 LKA-DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred HHh-hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 433 2222222 45566666777888887777665
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.043 Score=34.61 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
.+|..++.+|...|++++|+..|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777777 6664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.12 Score=46.54 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 003122 738 IESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGN-----------WRKYIEVLQWMEDAGIQPSYGMFRDIVSF 801 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 801 (846)
+++|+.=|++++. ++|+. .++..++.+|...|. +++|...|+++.+ .+|+...|+.-+..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHH
Confidence 3566666777777 77753 477777777665543 4556666666655 56777766655544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.09 E-value=4.4 Score=41.06 Aligned_cols=102 Identities=9% Similarity=0.133 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003122 301 TTHNIVIYCLVKLGQYD---KAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNA 377 (846)
Q Consensus 301 ~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 377 (846)
.++..++.+|...+..+ +|..+++.+....++ ....+..-++.+.+.++.+++.+.+.+|+..- .-....+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN---KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 35566677777666544 455555555443332 24455555666666777888888888887652 112223444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 378 LMAAY---ASHGMSKEALSVFNEIKKNGLCPDI 407 (846)
Q Consensus 378 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 407 (846)
.+..+ .. .....|...+..+....+.|..
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 34333 22 2334555566555544444433
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.041 Score=37.27 Aligned_cols=31 Identities=29% Similarity=0.269 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDIT 684 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (846)
++..+..+|...|++++|+++|+++++..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.7 Score=38.60 Aligned_cols=127 Identities=13% Similarity=0.109 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003122 126 NFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAH 205 (846)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 205 (846)
....++..+.+.+.......+++++...+ +.++...+.++..|++.+ ..+..+.+.. ..+.......++.|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 35567777777788888999999888764 467778899999998764 3344444442 12333344566777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGST-GNWREALKVCKKMTENGVGPDLVTHNIVLSAYK 276 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 276 (846)
.+.+.++++.-++..+.. +...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777777777766532 22233333333 6677776666541 24556666665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.81 Score=49.29 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 003122 231 STYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCL 310 (846)
Q Consensus 231 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 310 (846)
.-.+.++.-+-+.|..+.|+++...-. .-.....+.|+++.|.++.++. .+...|..|.+..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 335556666666666666666532211 1233345556666666554442 2555666777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 311 VKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKE 390 (846)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 390 (846)
.+.|+++-|.+.|.+.. | +..|+-.|.-.|+.+...++.+.....| -++....++.-.|+.++
T Consensus 358 L~~g~~~lAe~c~~k~~--------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK--------D---FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEE 420 (443)
T ss_dssp HHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHcCCHHHHHHHHHhhc--------C---ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHH
Confidence 77777777777666553 1 4555556666666666666666555544 13333444445566666
Q ss_pred HHHHHHH
Q 003122 391 ALSVFNE 397 (846)
Q Consensus 391 A~~~~~~ 397 (846)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.22 Score=45.28 Aligned_cols=92 Identities=15% Similarity=0.042 Sum_probs=50.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPD-----SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL 700 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 700 (846)
-+...|++++|..-|.++++. +++. .+.|..-..++.+.+.++.|++-..++++.++. ....+..-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 345667777777777777763 2222 234444455666777777777777777776654 222233333444444
Q ss_pred CCHHHHHHHHHhhccCCCc
Q 003122 701 RDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~ 719 (846)
.++++|+.=|+++.+..|.
T Consensus 182 ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhHHHHHHHHHHHHHhCcc
Confidence 4455555555544444443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.27 Score=46.24 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=52.0
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHH
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~ 777 (846)
...++..|+..|.++...+|. .+..|.+-+-.+.+..+++.+..--.++++ +.||.+ ..+.++.++.....+.+|+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 334455566666555555555 334555666666666777777777777777 777655 5666666666666777777
Q ss_pred HHHHHH
Q 003122 778 EVLQWM 783 (846)
Q Consensus 778 ~~~~~~ 783 (846)
..++++
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 777766
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.05 Score=34.25 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
.+|..++..+...|++++|++.|+++++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777777 6664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.90 E-value=6.1 Score=41.75 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITF---SDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
..+|..++..+.+.|+++.|...+..+...+... .+......+..+...|+..+|+..++...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666666667777777776666666533211 33444555666666666666666665544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.88 E-value=3.5 Score=38.93 Aligned_cols=19 Identities=0% Similarity=0.174 Sum_probs=10.9
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 003122 732 LGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~ 750 (846)
-...+++.+|+.+|++...
T Consensus 164 aa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.74 Score=49.59 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=80.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 003122 348 SVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAR 427 (846)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 427 (846)
.-.|+++++.++.+.-.-.. ..+....+.++..+.+.|..+.|+.+..+-. .-.....+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence 34556666555543111000 0113345666666777777777776653321 2234455667777776
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003122 428 EVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRD 507 (846)
Q Consensus 428 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 507 (846)
++.++. .+...|..|.+...+.|+++-|.+.|++... +..|+-.|...|+.+...++.......|
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 654432 2566777777777777777777777766543 3455555666666666666666655553
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 508 IKLNTVAYNSAIGSYMNVGEYEKAIALYKC 537 (846)
Q Consensus 508 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 537 (846)
- +|....++.-.|++++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 34444445555666665555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.18 Score=45.47 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 738 IESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
+++|...|+++.+ .+|++..|..-+... .+|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 5778888899998 999999998666544 3466666666665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.46 Score=40.97 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHH
Q 003122 226 VAPSRSTYNNLINACGSTGNWREALKVCKKMTEN-GVGPDLVTHNIVLSA 274 (846)
Q Consensus 226 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~ 274 (846)
..|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3456666666666666666666666666655433 444455555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.67 Score=40.00 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------cCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 003122 301 TTHNIVIYCLVKLGQYDKAIDLFHSMRE-------------KRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAE- 366 (846)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 366 (846)
.++..++.++++.|+++....+++..-. .+....|+..+..+++.+|+..|++..|.++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3444555555555555555555544321 12222344444444444444444444444444444332
Q ss_pred CCCCCHHHHHHHHH
Q 003122 367 GLKPNIVSYNALMA 380 (846)
Q Consensus 367 g~~p~~~~~~~li~ 380 (846)
+++.+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33333444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.21 Score=49.25 Aligned_cols=93 Identities=11% Similarity=-0.044 Sum_probs=55.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
++-|.++|.+++|+..|.+.+. +.| |++++..-..+|.+..++..|..-.+.++..+-. -...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 5667778888888888877776 455 6777777777788777777777766666653311 12233333333334444
Q ss_pred HHHHHHHHHhhccCCCc
Q 003122 703 WKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~ 719 (846)
..+|.+-++......|.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 44444444444444444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.7 Score=37.29 Aligned_cols=124 Identities=11% Similarity=0.189 Sum_probs=63.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCC
Q 003122 200 ALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGA 279 (846)
Q Consensus 200 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 279 (846)
.++..+.+.+........++.+.+.+. .+...++.++..|++.+. ....+.+.. . .+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 455555555666666666666666553 455566666666665432 222233221 1 23334444666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 003122 280 QYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKL-GQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYS 348 (846)
Q Consensus 280 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 348 (846)
.++++.-++..+.. +...+..+... ++++.|.+.+.+.. +...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~--------~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN--------NPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC--------CHHHHHHHHHHHH
Confidence 66666666665531 11122223333 66666666665421 4445655555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.035 Score=35.01 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=19.4
Q ss_pred HhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 711 KQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 711 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
+++.+.+|. ++.+|+.|+.+|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 444445555 5666667777777777776664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.1 Score=33.39 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 759 TYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
+|..|+.+|.+.|+|++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888854
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.05 E-value=2.9 Score=38.46 Aligned_cols=91 Identities=11% Similarity=-0.006 Sum_probs=51.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCC--ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHH
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFH--VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN--FNTYSILLKNLL 768 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~ 768 (846)
++..+...|++++|+.-++....... .....+-..|+......|.+|+|...++...+ ++ ......-++++.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccHHHHHHHHhhhHHH
Confidence 33445566666666666664432211 11122234566667777777777777665544 22 223334466677
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 003122 769 AAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~~g 787 (846)
..|+-++|...|+++++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777777654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.91 E-value=3.6 Score=35.05 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
.-+..+...|+-+.-.+++..+.+ .-++++.....++.+|.+.|+..+|-++++++-+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344555666776766666666653 24566667777777777777777777777777777653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.90 E-value=18 Score=42.93 Aligned_cols=257 Identities=17% Similarity=0.186 Sum_probs=130.9
Q ss_pred CcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHH
Q 003122 439 KPNLVSYSALIDAYGSNG--LLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYN 516 (846)
Q Consensus 439 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 516 (846)
.|+ .....+|..|.+.+ .+++|+....+...... . ......+..++- +..+..+|+.++..- | .=.
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~-~~ad~al~hll~---Lvdvn~lfn~ALgtY---D--l~L 855 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--A-VSADEALKHLLF---LVDVNELFNSALGTY---D--LDL 855 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--c-hhHHHHHHHHHh---hccHHHHHHhhhccc---c--hHH
Confidence 455 34455777888877 67777777777665211 1 111111111111 112222222222100 0 001
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 517 SAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 517 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
+++-+-..+.++.+-+-+++++.+. .++..-| .|+ ...++++.|+..+..+-. ..|.-.++.--+.|
T Consensus 856 al~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID--~~L~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~ 922 (1265)
T KOG1920|consen 856 ALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KID--DYLKRYEDALSHLSECGE-------TYFPECKNYIKKHG 922 (1265)
T ss_pred HHHHHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHH--HHHHHHHHHHHHHHHcCc-------cccHHHHHHHHhcc
Confidence 2333444556667766666666642 2222111 122 224566777666655431 12223333344566
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVI----TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVL 672 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 672 (846)
.+++|+.++. |+.. .|.+...-+...+.+++|.-+|+..-+ ..--+.+|..+|+|.+|+
T Consensus 923 Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 923 LYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred cchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 6777766553 3433 444444555566777777776666532 122355677778888887
Q ss_pred HHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 673 LVAEFMREQDITFSDSIF---FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIV 749 (846)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 749 (846)
.+..++..- ..... ..|+.-+..+++.-+|-++.+...... . .....|++...|++|.+.....-
T Consensus 986 ~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~-~-------~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 986 SLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP-E-------EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH-H-------HHHHHHhhHhHHHHHHHHHHhcc
Confidence 777766531 12222 456666777777777777776655321 1 33445666667777766665543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.48 Score=45.68 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 003122 192 KPDAETYNALISAHGRA-----GQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLV 266 (846)
Q Consensus 192 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 266 (846)
..|-.+|...+..+... +.++---..+..|.+.|+..|..+|+.|++.+-+..- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 35666666666655432 4455555556666666776677777766665533221 111 1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 003122 267 THNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQY-DKAIDLFHSMRE 328 (846)
Q Consensus 267 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 328 (846)
.+..+.-.|- .+-+-++.++++|...|+.||..+-..|+.++.+.|-. .+...+.-+|.+
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 1111111111 22345788999999999999999999999998877653 344555555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.73 E-value=15 Score=41.49 Aligned_cols=13 Identities=0% Similarity=0.059 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHh
Q 003122 738 IESMMKLFFKIVS 750 (846)
Q Consensus 738 ~~~A~~~~~~~~~ 750 (846)
+..|.++++++.+
T Consensus 525 ~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 525 LHLAKRYYDQASE 537 (552)
T ss_pred hHHHHHHHHHHHh
Confidence 5666666666665
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.63 E-value=12 Score=39.94 Aligned_cols=97 Identities=11% Similarity=0.127 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 579 PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSAL 658 (846)
Q Consensus 579 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 658 (846)
+.|.....+++..+...-..+-.+.+..+|+.-| .+-..|..++.+|... .-++-..+|+++.+..+ .|.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4455555555666655555555555566665532 3455555666666555 33555556665555321 122222233
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
+.-| ..++.+.+..+|.+++.
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~y 159 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHH
Confidence 3333 33555556666655554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.7 Score=45.70 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHhH
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED-----AGIQPSYGMF 795 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~ 795 (846)
..++..++..+...|+.+.+...+++.+. ..| |-..|..++.+|.+.|+...|+..|+++.. .|+.|.+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 44667888999999999999999999999 999 788999999999999999999999998755 5787877654
Q ss_pred HHHH
Q 003122 796 RDIV 799 (846)
Q Consensus 796 ~~l~ 799 (846)
....
T Consensus 231 ~~y~ 234 (280)
T COG3629 231 ALYE 234 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.15 Score=32.64 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+|..|+.+|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999765
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.53 Score=46.63 Aligned_cols=95 Identities=7% Similarity=-0.047 Sum_probs=66.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
-+.-|.++|++++|+..|...+...+. ++..+..-+.+|.+...+..|..-...+...+.. -+.+|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 356688888888888888888775443 6666777777777777777777666655544333 34555566666666777
Q ss_pred HHHHHHHHHHHHhcCCCcC
Q 003122 738 IESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~ 756 (846)
..+|.+-++.+++ ++|+
T Consensus 181 ~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHHhHHHHHh--hCcc
Confidence 7888888888877 7776
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.08 E-value=11 Score=38.14 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCH---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 549 TYTVLISSCCRLSRY---SEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 549 ~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
++..++.+|...+.. ++|..+++.+... .+....++..-++.+.+.++.+++.+.+..|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 345566666665543 3455555555433 23334555555666666777777777777777641 111223333333
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 626 AY---NTAEDWEKACALFLEMETNNIEPD 651 (846)
Q Consensus 626 ~~---~~~g~~~~A~~~~~~~~~~g~~p~ 651 (846)
.+ .. .....|...+..++...+.|.
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence 32 22 233456666666554334443
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=6.5 Score=35.35 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=53.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHhcCC
Q 003122 311 VKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNAL--MAAYASHGM 387 (846)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--i~~~~~~g~ 387 (846)
.+.|..++|+.-|..+.+.+.+.-| +...........+.|+...|...|.++-.....|-.. -...| .-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3445555555555555544433111 1122222333445555555555555554433222221 11111 112334555
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003122 388 SKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRI 435 (846)
Q Consensus 388 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 435 (846)
+++.....+-+-..+.+.....-.+|.-+-.+.|++.+|...|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555555444444333222233334444444555555555555555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.24 Score=31.13 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
.+|..++.+|...|++++|+..++++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4788999999999999999999999987 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.98 E-value=5.8 Score=36.54 Aligned_cols=116 Identities=10% Similarity=-0.026 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 635 KACALFLEMETNNIEPDSI--ACSALMRAFNKGGQPSKVLLVAEFMREQDIT--FSDSIFFEMVLACSLLRDWKTTIDLI 710 (846)
Q Consensus 635 ~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 710 (846)
+.....+++....-..... +-..+...+...|++++|...++..+..--+ .....-..++.+....|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555556665531111111 1223455678889999999988888753211 01122345666788889999999998
Q ss_pred HhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003122 711 KQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG 752 (846)
Q Consensus 711 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 752 (846)
+........ ...-..-+.++...|+.++|+..|+++++++
T Consensus 150 ~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 887655332 2234466788999999999999999999843
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.66 Score=44.74 Aligned_cols=105 Identities=18% Similarity=0.302 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 003122 335 PDIVTFTSIIHLYSV-----NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVS 409 (846)
Q Consensus 335 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 409 (846)
.|-.+|.+.+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..- .|...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv- 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV- 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH-
Confidence 355566666655543 35677777777788888888888888888777644221 11111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCH
Q 003122 410 YTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLL 458 (846)
Q Consensus 410 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 458 (846)
+....--| -.+-+-+++++++|..+|+.||..+-..|++++.+.+-.
T Consensus 128 fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11111111 123345778888888888888888888888888776653
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.86 E-value=9.6 Score=36.82 Aligned_cols=240 Identities=11% Similarity=0.054 Sum_probs=122.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcC
Q 003122 525 VGEYEKAIALYKCMKKRKVMPDS---VTYTVLISSCCRLSRYSEALGFLDEMMDL-----KIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g 596 (846)
..++++|+.-|++.++....-.. .....++....+.+++++.+..+.+++.. ...-+....+++++.-+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34667777777776654211122 23344566667777777777777766521 01234445566666555555
Q ss_pred CHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCC-------HHHHHHHHH
Q 003122 597 LIAEAESMFNMMKM----S-GCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNI----EPD-------SIACSALMR 660 (846)
Q Consensus 597 ~~~~A~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----~p~-------~~~~~~l~~ 660 (846)
+.+--.++|+.-+. . +-..-..|-.-|...|...+.+.+-.++++++...-- .-| ..+|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55544444443322 1 0011122335666777777777777777777654210 111 335666677
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHH----HHHHHHhcCCHHHHH-HHHHhh---ccCCCccchhh--HHHHH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQ-DITFSDSIFFE----MVLACSLLRDWKTTI-DLIKQM---EPSFHVVSIGL--LNQLL 729 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~----l~~~~~~~g~~~~A~-~~~~~~---~~~~~~~~~~~--~~~l~ 729 (846)
.|..+.+-.+-..+|++++.. ..-|.+.+... -+....+.|+|++|- ++|+.. .+.+......+ |..|+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 777777777777788877752 22233333321 222344667777765 333333 22222212222 44556
Q ss_pred HHHHhcC----CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 003122 730 HLLGKSG----RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAG 771 (846)
Q Consensus 730 ~~~~~~g----~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 771 (846)
.++.++| +-.+|. -..-+|...+...|+.+|.+..
T Consensus 280 NMLmkS~iNPFDsQEAK-------PyKNdPEIlAMTnlv~aYQ~Nd 318 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK-------PYKNDPEILAMTNLVAAYQNND 318 (440)
T ss_pred HHHHHcCCCCCcccccC-------CCCCCHHHHHHHHHHHHHhccc
Confidence 6666665 222221 1012344556777777776543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.26 Score=30.86 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
..|..++.+|...|++++|++.++++++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 4678899999999999999999999987 4443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.79 E-value=15 Score=38.80 Aligned_cols=168 Identities=7% Similarity=-0.038 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHH
Q 003122 616 DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP---DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS--DSIF 690 (846)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~ 690 (846)
...+|..++..+.+.|+++.|...+.++...+... ++.....-+..+...|+..+|+..++..++...... ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 36688889999999999999999999988743111 334455556778888999999999988887222211 0000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCcC-HHHHHHH
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS------GRIESMMKLFFKIVSSGAEAN-FNTYSIL 763 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 763 (846)
..+...... ..+... ...........-..++..++.-+... +..+++...|.++++ +.|+ ...|..+
T Consensus 225 ~~~~~~~~~--~~~~~~--~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~ 298 (352)
T PF02259_consen 225 AELKSGLLE--SLEVIS--STNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSW 298 (352)
T ss_pred HHHhhcccc--cccccc--ccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHH
Confidence 001000000 000000 00000001111223445555555555 789999999999999 8885 4477777
Q ss_pred HHHHHhc----C-------------CHHHHHHHHHHHHHCCCC
Q 003122 764 LKNLLAA----G-------------NWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 764 ~~~~~~~----g-------------~~~~A~~~~~~~~~~g~~ 789 (846)
+..+.+. . ....|+.-|-+....|-+
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7654332 1 113477777777765543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.18 Score=31.63 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+|..++..|...|++++|...|+++++ +.||
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 456666677777777777777777766 5553
|
... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.69 E-value=23 Score=40.71 Aligned_cols=193 Identities=11% Similarity=0.049 Sum_probs=91.4
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhcCChhHHHHHHH--------HHHHCCCCCCHHHHH
Q 003122 628 NTAEDWEKACALFLEMETNN-IEPD-------SIACSALMRAFNKGGQPSKVLLVAE--------FMREQDITFSDSIFF 691 (846)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~g-~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~ 691 (846)
+-.+++.+|....+.|.+.. -.|+ +.++...+-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 45678888888888877521 1111 2222222223445688888888887 333444332222221
Q ss_pred H--HHHHHHhcCC--HHH--HHHHHHhhccC---CCccchhhHHHH-HHHHHhc--CCHHHHHHHHHHHHhcC--CCcCH
Q 003122 692 E--MVLACSLLRD--WKT--TIDLIKQMEPS---FHVVSIGLLNQL-LHLLGKS--GRIESMMKLFFKIVSSG--AEANF 757 (846)
Q Consensus 692 ~--l~~~~~~~g~--~~~--A~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~--g~~~~A~~~~~~~~~~g--~~p~~ 757 (846)
. ++.++...+. ..+ ..++++.+.+. .+......++.+ ..++... -...++...+.+.++.- ...+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 1 2222322222 222 55666655432 222233333333 3333321 23456666666665521 11121
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHhHHHH-----HHHHHhcCCcchHHHHHHHHHHH
Q 003122 758 N----TYSILLKNLLAAGNWRKYIEVLQWMEDAGI-QPS--YGMFRDI-----VSFAQTRGGAEYAAIIQERIESL 821 (846)
Q Consensus 758 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~--~~~~~~l-----~~~~~~~~~~~~a~~~~~~l~~l 821 (846)
. +.+.|...+. .|+..|............- .|| ...|..+ ...+...|+.+++....+++..+
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 1 3334444455 6777765554444322111 122 2233222 34466678888888888777654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.53 E-value=6.1 Score=33.74 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003122 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGL 368 (846)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 368 (846)
.....++.+.+.|+-+...+++..+... .. ++....-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~--~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EE--INPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cC--CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344444455555555555555554321 11 3444455555555555555555555555555553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.52 E-value=2.9 Score=37.39 Aligned_cols=52 Identities=13% Similarity=-0.068 Sum_probs=26.6
Q ss_pred HhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 698 SLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
...++.+++..++..+.-..|. .+.+-..-+..+...|++.+|+++|+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555444444 233333444445555566666666655544
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.34 E-value=22 Score=39.76 Aligned_cols=121 Identities=11% Similarity=-0.017 Sum_probs=66.8
Q ss_pred HHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 003122 661 AFNKGGQPSKVLLVAEFMRE-QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 739 (846)
++.--|+-++|-.+.++|.. .++-....-.+.++.+|+..|+..-..+++.-...+ ++.++.-...++-++.-..+.+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 45556777777777777774 222222333456667777777766666666554422 2224333333444444455666
Q ss_pred HHHHHHHHHHhcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 740 SMMKLFFKIVSSGAEANFN--TYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
.-..+.+-+.+. .+|... +-..|+-++.-.|. .+|+.+++.|.
T Consensus 589 ~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~ 633 (929)
T KOG2062|consen 589 QLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLT 633 (929)
T ss_pred hchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhh
Confidence 665555554442 455433 33444444555564 47777777774
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.23 E-value=13 Score=37.84 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHc--CC----CHHHHHHHHHHHHhC
Q 003122 248 EALKVCKKMTENGVGPDLVTHNIVLSAYKN--GA----QYSKALSYFELMKGT 294 (846)
Q Consensus 248 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g----~~~~A~~~~~~m~~~ 294 (846)
+...+++.|.+.|+..+..+|-+....... .. ....|..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 345666777777776666555442222221 11 234566666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.19 E-value=2.5 Score=39.24 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 618 ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
..+..++.-|++.|+.++|++.|.++.+....+. ...+..+++.....|++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455556666666666666666666665433333 22344555566666666666666555553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.5 Score=40.68 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN--TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+..++..|.+.|++++|.+.|.++.+....+... .+..++......|+|..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566666666677777777776666644444332 455556666666666666666666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.89 E-value=9.1 Score=34.31 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=48.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
.+.++.+++..++..+.-..|. ....-..-+..+...|+|.+|+.+++.+....+. .+.+--.++.++...|+ ..=.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kALlA~CL~~~~D-~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKALLALCLYALGD-PSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHcCC-hHHH
Confidence 3566777777777777765554 3444455566677777777777777777665554 22222223333333333 2334
Q ss_pred HHHHHHHh
Q 003122 743 KLFFKIVS 750 (846)
Q Consensus 743 ~~~~~~~~ 750 (846)
....++++
T Consensus 98 ~~A~evle 105 (160)
T PF09613_consen 98 RYADEVLE 105 (160)
T ss_pred HHHHHHHh
Confidence 44555665
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=91.69 E-value=2 Score=41.26 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 722 IGLLNQLLHLLGKSGR-------IESMMKLFFKIVSSGAEA-----NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~g~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
..++..+++.|...|+ +..|.+.|+++.+..-.| +....+.++..+.+.|++++|...+.++...+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4445566666666665 345666666666643333 2346666777899999999999999999875433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.55 E-value=10 Score=34.18 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=25.0
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+...|.+++.....+-+.......-..+-..|+-+-.+.|++..|...|..+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344445555444444443332222333334455555555555555555555544
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.93 E-value=13 Score=39.26 Aligned_cols=143 Identities=10% Similarity=-0.040 Sum_probs=90.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC-------CCccc-hhhHHHHHH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS-------FHVVS-IGLLNQLLH 730 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~~l~~ 730 (846)
+++|.+..+...+..-.+.++...- .+..........+...|++.+|.+++-...-. -|..+ -.+||+|+-
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~-~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQ-DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcC-CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 3444444444444433333332111 13444555566777888888888887765211 11111 234688888
Q ss_pred HHHhcCCHHHHHHHHHHHHh-------cCCCcCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 731 LLGKSGRIESMMKLFFKIVS-------SGAEANF----------NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 731 ~~~~~g~~~~A~~~~~~~~~-------~g~~p~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.....|.+..+..+|.+++. .|+.|.. ...+..+-.|...|+.-.|.+.|.+.... +..+|.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPr 370 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPR 370 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcH
Confidence 88888999999999988874 3545421 13344555688999999999999988765 667888
Q ss_pred hHHHHHHHHH
Q 003122 794 MFRDIVSFAQ 803 (846)
Q Consensus 794 ~~~~l~~~~~ 803 (846)
.|-.+..++.
T Consensus 371 lWLRlAEcCi 380 (696)
T KOG2471|consen 371 LWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHH
Confidence 8888776653
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.64 E-value=22 Score=36.37 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT----AEDWEKACALFLEMETNN 647 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 647 (846)
+..+|..+|..+...| +......|...|.. ..+..+|..+|+++.+.|
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 3455555555444433 22233334444433 235566666666666555
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.58 E-value=22 Score=36.32 Aligned_cols=181 Identities=15% Similarity=0.064 Sum_probs=110.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 003122 595 QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYN----TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK----GG 666 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g 666 (846)
.+++..|...+......+ +......+...|. ...+..+|..+|..+.+.|. ......|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCccc
Confidence 345555555555555432 2233333333333 34468889999998877653 3344446655554 33
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----C--CHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----c
Q 003122 667 QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL-----R--DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----S 735 (846)
Q Consensus 667 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 735 (846)
+..+|..+|+++.+.|..+.......++..|..- - +...|..++.++.... +......|+..|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 8899999999999988543222245555555443 1 2337888888876555 34556677766644 3
Q ss_pred CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCCC
Q 003122 736 GRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAG---------------NWRKYIEVLQWMEDAGI 788 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~g~ 788 (846)
.+.++|...|.++.+.|- ......+. .+...| +...|...+..+...|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 389999999999998543 44555555 655555 55555556655555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.23 E-value=12 Score=32.89 Aligned_cols=55 Identities=5% Similarity=0.029 Sum_probs=34.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 003122 664 KGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 719 (846)
..++.+++..++..+.-..|+ ....-..-+..+...|+|.+|++++..+.+..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 366777777777777665444 3333344555666777777777777777655544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.32 Score=48.39 Aligned_cols=90 Identities=11% Similarity=0.020 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHH
Q 003122 700 LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIE 778 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~ 778 (846)
.|.+++|++.+....+.+|. ...+|..-+.++.+.++...|++-+..+++ ++||.. .|-.-..+..-+|+|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 44556666666655555554 444555556666677777777777777777 777654 44444555666777777777
Q ss_pred HHHHHHHCCCCCCH
Q 003122 779 VLQWMEDAGIQPSY 792 (846)
Q Consensus 779 ~~~~~~~~g~~p~~ 792 (846)
.+..+.+.++.+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 77777666655443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.35 Score=29.92 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.++.++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 444444445555555555555544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.93 E-value=43 Score=38.68 Aligned_cols=196 Identities=14% Similarity=0.048 Sum_probs=96.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 003122 592 YSKQGLIAEAESMFNMMKMSGCSPD-------VITYTAMLHA-YNTAEDWEKACALFLEMETN----NIEPDSIACSALM 659 (846)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~l~ 659 (846)
.....++++|..++.++...-..|+ .-.|+.|-.. ....|+.++|.++.+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3445667777777766654311221 1233333322 23457777777777776652 1122344555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcCCHH--HHHHHHHhhc----cCCCc--cchhhHH
Q 003122 660 RAFNKGGQPSKVLLVAEFMREQDITFSDSIF-----FEMVLACSLLRDWK--TTIDLIKQME----PSFHV--VSIGLLN 726 (846)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~--~A~~~~~~~~----~~~~~--~~~~~~~ 726 (846)
.+..-.|++++|..+.....+..-.-+..++ ..-..++..+|+.. +.+..+.... ...+. .-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 6666677888877777666553211122222 12223455666322 2222222221 11111 0112233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC--CcCH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGA--EANF--N--TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP 790 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~~--~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 790 (846)
.+.+++.+ ++.+..-+...++.|. .|.. . .+..|+..+...|+.++|...+.++......+
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 33344333 5555555555444332 2221 1 33466777788888888888777776644433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.67 E-value=3.9 Score=40.58 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 003122 584 VYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMET-----NNIEPDSIACSAL 658 (846)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l 658 (846)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44455555666666666666666666543 33556666666666666666666666665543 4555555554444
Q ss_pred HHH
Q 003122 659 MRA 661 (846)
Q Consensus 659 ~~~ 661 (846)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.64 E-value=36 Score=38.92 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=15.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 767 LLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
++..|+|++|++.++++ ++-|.
T Consensus 515 ~~~~g~~~~AL~~i~~L---~liP~ 536 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL---DLIPL 536 (613)
T ss_dssp HHHTT-HHHHHHHHHHT---T-S-S
T ss_pred HHHcCCHHHHHHHHHhC---CCCCC
Confidence 77899999999888776 35563
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.51 E-value=29 Score=36.03 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=63.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHH
Q 003122 671 VLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS---GRIESMMKLFFK 747 (846)
Q Consensus 671 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 747 (846)
-+.+++++++.++. +......++..+.+..+.++..+.++++...+|. +..+|..++...... -.++....+|.+
T Consensus 50 klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 50 KLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 34455555554442 4444455555555555555555555555555554 455555555544331 245555555555
Q ss_pred HHhc------CC------CcC--HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003122 748 IVSS------GA------EAN--FN---TYSILLKNLLAAGNWRKYIEVLQWMEDAGI 788 (846)
Q Consensus 748 ~~~~------g~------~p~--~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 788 (846)
++.. |. .|+ .. .+..+...+.+.|..+.|+.+++.+.+..+
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 5431 11 011 11 334445557788999999999999988665
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.24 E-value=8.3 Score=40.66 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=30.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 348 SVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSK 389 (846)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 389 (846)
...+.++...+++..+...|.....+.++.-...|.+.|...
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 346778888888888888776666666777777777777654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.02 E-value=28 Score=35.38 Aligned_cols=127 Identities=9% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--c----CCHhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC---
Q 003122 530 KAIALYKCMKKRKVMPDSVTYTVLISSCCR--L----SRYSEALGFLDEMMDLKI---PLTNQVYSSVISAYSKQGL--- 597 (846)
Q Consensus 530 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 597 (846)
+.+.+++.|.+.|..-+..+|.+....... . .....|..+|+.|.+... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666555554432222211 1 123456666666665421 1233333333322 2222
Q ss_pred -HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 598 -IAEAESMFNMMKMSGCSPD--VITYTAMLHAYNTAED--WEKACALFLEMETNNIEPDSIACSAL 658 (846)
Q Consensus 598 -~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l 658 (846)
.+.++.+|+.+...|+..+ ......++........ ..++..+++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2445555555555554433 2222333322211111 33555666666666655554444433
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.98 E-value=25 Score=34.71 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 725 LNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 725 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++.....|.++|.+.+|.++-++++. +.| +...|..|...|...|+--.|...|+++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44556667778888888888888888 777 666777777788888887777777776643
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.70 E-value=48 Score=37.59 Aligned_cols=105 Identities=9% Similarity=-0.009 Sum_probs=59.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003122 131 IKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ 210 (846)
Q Consensus 131 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 210 (846)
++.+.+.+.+++|+..-+..........-..++...|+.+.-.|++++|-.+.-.|.. -+...|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 5566666778888777665433211001335677777777777888888777777764 445555555555555444
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 211 WRWAMNIFDDMLRAAVAPSRSTYNNLINACGS 242 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 242 (846)
.... +..+.......+...|..++..+..
T Consensus 439 l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 3332 2222332223456667777766655
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.72 Score=28.79 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+|..++..|.+.|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678889999999999999999999876
|
... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.60 E-value=20 Score=37.11 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHh---cCCHHHHHH
Q 003122 703 WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLA---AGNWRKYIE 778 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~---~g~~~~A~~ 778 (846)
.+.-+.+++++.+.+|. +...+..++..+.+..+.++..+.+++++. ..| +...|...+..... .-.+.+...
T Consensus 47 ~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~--~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLF--KNPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 35667788888877885 778888889999999999999999999999 788 46688877776333 234555555
Q ss_pred HHHHHHHC------CC-C--CCH---H-----hHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 003122 779 VLQWMEDA------GI-Q--PSY---G-----MFRDIVSFAQTRGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 779 ~~~~~~~~------g~-~--p~~---~-----~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~ 823 (846)
+|.+.+.. |. . ++. . ++..++.|+...|-.+.|..+++.+.+++-
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 55543321 11 0 111 1 356667888899999999999999998764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.99 E-value=9.1 Score=33.66 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 735 SGRIESMMKLFFKIVSSGAEANFNTYSI-LLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.++.+++..+++.+.- +.|+...... -++.+...|+|.+|+.+++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4455555555555554 5554332222 233355555555555555555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.75 E-value=26 Score=33.43 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=7.7
Q ss_pred hcCCHhHHHHHHHHHH
Q 003122 559 RLSRYSEALGFLDEMM 574 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~ 574 (846)
+..+.++|...++..+
T Consensus 85 kk~~~~eAv~cL~~ai 100 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAI 100 (288)
T ss_pred hccChHHHHHHHHHHH
Confidence 3335555555554443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.41 E-value=1.2 Score=29.28 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+++.|+..|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666666554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.20 E-value=23 Score=32.23 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=16.8
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 218 FDDMLRAAVAPSRSTYNNLINACGSTGNWRE 248 (846)
Q Consensus 218 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 248 (846)
+..+.+.+++|+...+..+++.+.+.|++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3344445555555556666666665555443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.13 E-value=23 Score=33.40 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLG 733 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 733 (846)
...++.+.+.++..+|+...+.-++.+|. +...-..+.+.++-.|+|++|..-++..-...|..+ ...|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~-- 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC-- 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH--
Confidence 33455666777788888877777765554 444445566777888888888877776654444433 3445555544
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcC-----HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC
Q 003122 734 KSGRIESMMKLFFKIVSSGAEAN-----FNTYSILLKN---LLAAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g 787 (846)
+.+-.+.++-+..|+ ...|...+.+ +...|.-+.+..+.+.+.+.+
T Consensus 82 --------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa 135 (273)
T COG4455 82 --------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAA 135 (273)
T ss_pred --------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhC
Confidence 122233444445552 2244433322 222334444556667777654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.66 E-value=8.6 Score=41.70 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
.+.++..+.++|-.++|+++- ..|+.. .....+.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s-------~D~d~r-----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS-------TDPDQR-----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC-------CChhhh-----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 344555555666655555432 122221 122345677777766654432 56677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDL 709 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 709 (846)
.+++..|.+.|.+..+ |..|+-.+...|+.+.-..+-....+.|.. + .. ..+|...|++++.+++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-~A----F~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-LA----FLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-hH----HHHHHHcCCHHHHHHH
Confidence 7777777777777765 445555666667666655555555555432 1 11 2345566676666666
Q ss_pred HHh
Q 003122 710 IKQ 712 (846)
Q Consensus 710 ~~~ 712 (846)
+.+
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.55 E-value=6.1 Score=33.90 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHhhcc-CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 684 TFSDSIFFEMVLACSLLRD---WKTTIDLIKQMEP-SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 684 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.++..+-+.++.++.++.+ .++.+.+++.+.+ ..|...-.+...|+-++.+.|+++.++++.+.+++ .+||+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 3455555566666665544 3455566666654 44444455556666777777777777777777777 66643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.50 E-value=1.4 Score=28.95 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+++.|+..|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998865
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=86.43 E-value=8.4 Score=30.92 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCC-cchHHHHHHHHH
Q 003122 743 KLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQTRGG-AEYAAIIQERIE 819 (846)
Q Consensus 743 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~-~~~a~~~~~~l~ 819 (846)
..+++.++ .+| |...-..++..|...|++++|++.+-.++...-.. +...-..++.++.-.|. ++.+.+.-.++.
T Consensus 9 ~al~~~~a--~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 9 AALEAALA--ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34555555 567 45577778888888888888888877776653222 22334555566555554 556666666655
Q ss_pred HH
Q 003122 820 SL 821 (846)
Q Consensus 820 ~l 821 (846)
.+
T Consensus 87 ~l 88 (90)
T PF14561_consen 87 SL 88 (90)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.42 E-value=8.7 Score=38.29 Aligned_cols=61 Identities=10% Similarity=-0.016 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
..++|-.+|.+.++++.|.++.+.++. +.|+ +.-+..-+-+|.+.|.+..|..-++.-++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 356888899999999999999999999 9995 557888888999999999999988888764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=40 Score=34.08 Aligned_cols=92 Identities=15% Similarity=0.029 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE-DWEKACALFLEMETNNIEPDSIACSALM 659 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 659 (846)
+..+-...+.++.+.++ .+|+..+-.++. .+|...-...+.++.+.+ ...++...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34444444444544443 344444444443 233333333333333321 12344444444442 23444444444
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 003122 660 RAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~ 680 (846)
.++.+.|+ ..|+..+-+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~ 233 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELK 233 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHc
Confidence 44544444 334444444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=3.9 Score=42.74 Aligned_cols=125 Identities=11% Similarity=-0.055 Sum_probs=76.1
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 557 CCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKA 636 (846)
Q Consensus 557 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (846)
-...|+...|-+-+...+.. .+.++.........+...|+++.+.+.+...... +.....+...++......|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 34567777776666555543 2333444444445567788888888777655442 122345666777777777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003122 637 CALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDIT 684 (846)
Q Consensus 637 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (846)
..+-.-|+...++. +.....-....-..|-++++...|+++...+++
T Consensus 377 ~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 88888777654432 222222222334557788888888888776544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.90 E-value=54 Score=35.22 Aligned_cols=180 Identities=11% Similarity=0.119 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003122 544 MPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAM 623 (846)
Q Consensus 544 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 623 (846)
..|.....+++..+...-...-...+..+|+..| .+...|..++++|... ..++-..+++++.+..+ .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4466677788888888878888888889998854 6788899999999988 56777888888888643 355666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPD------SIACSALMRAFNKGGQPSKVLLVAEFMRE-QDITFSDSIFFEMVLA 696 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~ 696 (846)
+..|-+ ++.+++..+|.++... +-|. ...|..|...- ..+.+.-+.+..+... .|.......+..+-.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 666666 8889999999998864 2231 12444444321 3556666666666664 3433334444455566
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
|....+|.+|+++++.+.+.+.. +.-+-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 77888888888888877766555 434444444433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.43 E-value=73 Score=36.27 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 003122 518 AIGSYMNVGEYEKAIALYKCMK 539 (846)
Q Consensus 518 li~~~~~~g~~~~A~~~~~~~~ 539 (846)
|+..|...+++.+|+.++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5666666667777766665554
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.36 E-value=85 Score=36.98 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003122 514 AYNSAIGSYMNVGEYEKAIALYKCMKKR 541 (846)
Q Consensus 514 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 541 (846)
.|..|+..|...|+.++|+++|.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3677888888888888888888887763
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.23 E-value=13 Score=40.50 Aligned_cols=153 Identities=14% Similarity=0.190 Sum_probs=102.0
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 003122 133 EITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWR 212 (846)
Q Consensus 133 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 212 (846)
.+.-+|+++.|-.++..+. .+.-+.+++.+-++|-.++|+++ .+|... -.....+.|+++
T Consensus 595 t~vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~ 654 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLD 654 (794)
T ss_pred HHhhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHH
Confidence 3344577777766554433 23456677788888888888776 233322 123345678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003122 213 WAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMK 292 (846)
Q Consensus 213 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 292 (846)
.|.++..+. .+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+....+-....
T Consensus 655 iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 655 IAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 888876654 2666788899988899999988888876654 4456666777777776666666666
Q ss_pred hCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 293 GTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSM 326 (846)
Q Consensus 293 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 326 (846)
+.|.. |.. .-+|...|+++++.+++.+-
T Consensus 720 ~~g~~-N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGKN-NLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhccc-chH-----HHHHHHcCCHHHHHHHHHhc
Confidence 66633 322 23466788999988888765
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=85.10 E-value=54 Score=34.53 Aligned_cols=96 Identities=9% Similarity=-0.050 Sum_probs=65.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHhhccCCCc----cchhhHHHHHHHHH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC-SLLRDWKTTIDLIKQMEPSFHV----VSIGLLNQLLHLLG 733 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 733 (846)
+..+.+.|-+..|+++.+-+...++.-|+.....+++.| .++++++--+++++........ .-+..-...+-++.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 456778899999999999999887776776666777765 4677788778887765442111 01223334445555
Q ss_pred hcCCH---------------HHHHHHHHHHHhcCCCcC
Q 003122 734 KSGRI---------------ESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 734 ~~g~~---------------~~A~~~~~~~~~~g~~p~ 756 (846)
..++. +.|...+.+++. .-|.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~--~fP~ 225 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAIL--RFPW 225 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHH--HhHH
Confidence 56655 889999988887 5554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.51 E-value=9.3 Score=35.66 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 282 SKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSEC-LPDIVTFTSIIHLYSVNGQIENCK 357 (846)
Q Consensus 282 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 357 (846)
++|.+.|-.+...+.-.++.....|+.-|. ..+.++++.++..+++....- .+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555656555554444444444444333 456666666666665543332 455666666666666666666553
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.43 E-value=4.7 Score=28.46 Aligned_cols=29 Identities=17% Similarity=0.017 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.++-++.+.|++++|.+..+.+++ .+|++
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 444444555555555555555555 55543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.39 E-value=1.5e+02 Score=38.85 Aligned_cols=152 Identities=14% Similarity=0.051 Sum_probs=95.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003122 447 ALIDAYGSNGLLAEAVEVFREMEQDGI--EPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMN 524 (846)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 524 (846)
.+..+-.+.+.+..|+-.++.-..... ......+..+...|+..++.++...+...... + .....-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~-~sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----D-PSLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----C-ccHHHHHHHHHh
Confidence 455566778899999999888311111 11223344455589999998888777664211 1 122344556778
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHH
Q 003122 525 VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS-VISAYSKQGLIAEAES 603 (846)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~ 603 (846)
.|+++.|...|+.+.+.+ ++...+++.++......|.++..+-..+-..... .+....++. =+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999874 3346677777777777788888877666655432 333333333 3344456666666655
Q ss_pred HHH
Q 003122 604 MFN 606 (846)
Q Consensus 604 ~~~ 606 (846)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.33 E-value=1.7 Score=25.99 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+|..++..+...|++++|...++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555556666666666666666555
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.19 E-value=60 Score=34.23 Aligned_cols=70 Identities=10% Similarity=-0.010 Sum_probs=41.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKN-----LLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
-..+|..++..-...|+.+-|....+++.. +..+...-...+.. -.-....++|.+.++.+....+.+..
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~--L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALK--LADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--hccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhh
Confidence 345677777777788888888888888877 33321111111111 23345577777777776655555543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.42 E-value=7.7 Score=36.37 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 003122 270 IVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIH 345 (846)
Q Consensus 270 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~ 345 (846)
..++.+.+.+.+.+|+...++-.+.. +.|..+-..++..||-.|++++|...++-.-...+...+...+|..+|.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455555666666666666555443 3345555566666667777777766666665555554445555555554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.39 E-value=46 Score=32.37 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcCC
Q 003122 421 QQPVKAREVFNMMRINNLKP---NLVSYSALIDAYGSNGLLAEAVEVFREMEQD---GI--EPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 421 g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~--~~~~~~~~~ll~~~~~~g~ 492 (846)
.++++|+.-|.+..+..... .......+|..+.+.|++++.++.+.+++.- .+ .-+..+.+.+++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35556666666555431111 1223344566666677777766666666431 11 1223344555554444444
Q ss_pred HHHHHHHHHHHHhC-CCccCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CC-------HHHHHHHHHH
Q 003122 493 KVNIDAVLLAAEMR-DIKLNTV----AYNSAIGSYMNVGEYEKAIALYKCMKKRKVM----PD-------SVTYTVLISS 556 (846)
Q Consensus 493 ~~~a~~~~~~~~~~-~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----p~-------~~~~~~li~~ 556 (846)
.+....+++.-... .-..|.. +-..|...|...+++.+..++++++...... .| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 44333333322110 0000111 1234555666666666666666665542111 11 2345555666
Q ss_pred HHhcCCHhHHHHHHHHHHH
Q 003122 557 CCRLSRYSEALGFLDEMMD 575 (846)
Q Consensus 557 ~~~~g~~~~A~~~~~~~~~ 575 (846)
|....+-..-..++++.+.
T Consensus 201 YT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhcccHHHHHHHHHHHH
Confidence 6666666666666666653
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.27 E-value=1.4 Score=27.13 Aligned_cols=29 Identities=10% Similarity=0.358 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
+..++.++...|++++|++.++++....|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34555566666666666666666655554
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=83.00 E-value=20 Score=34.43 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
..+...++....+.|+.++|.+.|.+++..+-.+.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 45566788888899999999999999997543333
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.90 E-value=73 Score=34.28 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 738 IESMMKLFFKIVSS-GAEANFNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 738 ~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
+..++.+|+.|+.. | .|+..|......=...|..+.+-.++.++.
T Consensus 512 l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 512 LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 44455555555432 2 333344443333334455554444444443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.55 E-value=2.7 Score=44.24 Aligned_cols=95 Identities=11% Similarity=-0.095 Sum_probs=48.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 003122 660 RAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 739 (846)
.-+.+.+.++.|..++.++++.++. ....|..-..++.+.+++..|+.=..++.+..|. ...+|..-+.++...+++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 3444556666666666666664332 2222333334555555555555555555545444 3344444455555555555
Q ss_pred HHHHHHHHHHhcCCCcCHH
Q 003122 740 SMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~~~ 758 (846)
+|...|+.... +.|+..
T Consensus 90 ~A~~~l~~~~~--l~Pnd~ 106 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDP 106 (476)
T ss_pred HHHHHHHHhhh--cCcCcH
Confidence 55555555555 555433
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.35 E-value=17 Score=34.68 Aligned_cols=84 Identities=8% Similarity=-0.014 Sum_probs=51.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPDSIA-CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
|.....+..|+..|.+.+. +.|+..+ |..-+-++.+..+++.+..--.++++..+. .....+.++........+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccccH
Confidence 4455567777777777766 5666543 334455566677777777766666664433 23334455666666666677
Q ss_pred HHHHHHhh
Q 003122 706 TIDLIKQM 713 (846)
Q Consensus 706 A~~~~~~~ 713 (846)
|+..++++
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 77666655
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.29 E-value=77 Score=34.12 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKN---LLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDI 798 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 798 (846)
..-+.+..-+.+.|-..+|+..|.+... +.| ....|..++.. ....| ...+.++|+.|... +-.|+..|...
T Consensus 461 tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~lw~~y 536 (568)
T KOG2396|consen 461 TLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSDLWMDY 536 (568)
T ss_pred ehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChHHHHHH
Confidence 3446778888899999999999999998 777 56677777765 33334 77788889988653 33778888888
Q ss_pred HHHHHhcCCcchHHHHHHHHHH
Q 003122 799 VSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 799 ~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
..+-...|..+.+-.+|.+..+
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHhhccCCCcccccHHHHHHHH
Confidence 8887788888888888887765
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.24 E-value=17 Score=36.25 Aligned_cols=49 Identities=22% Similarity=0.139 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 632 DWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 632 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
+.++++.++..=++.|+-||..+++.+++.+.+.+++.+|..+...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666666666555555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.23 E-value=60 Score=32.83 Aligned_cols=17 Identities=6% Similarity=-0.226 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHhcCC
Q 003122 476 NIVSICTLLAACGRCGR 492 (846)
Q Consensus 476 ~~~~~~~ll~~~~~~g~ 492 (846)
+..+-...+.++++.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33333444444444443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.16 E-value=5.3 Score=28.20 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 003122 760 YSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFA 802 (846)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 802 (846)
.+.++-++++.|++++|....+.+++ ++|+......|...+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 44566678888888888888888887 678777666665444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.05 E-value=13 Score=34.80 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 634 EKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ---DITFSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 634 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 706 (846)
++|.+.|-++...+.--++....+|+. |.-..+.++|+.++.++++. +-.+++.++..++.++...|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554443333333333333 22344555555555555541 2234555555555555555555554
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.95 E-value=23 Score=28.84 Aligned_cols=60 Identities=10% Similarity=0.233 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 003122 213 WAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLS 273 (846)
Q Consensus 213 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 273 (846)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.. +......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 56666777777778888888888888888888888888888877654 1122226666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.64 E-value=0.26 Score=44.10 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=19.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE 676 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (846)
+.+..+....+++.+...+...+....+.++..|++.++.++.+++++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 334444444444444433322334444444444444444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.56 E-value=1.1e+02 Score=35.31 Aligned_cols=118 Identities=6% Similarity=-0.094 Sum_probs=73.8
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 003122 594 KQGLIAEAESMFNMMKMSG-CSPD--VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSK 670 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 670 (846)
...+.+.|..++....... +.+. ..++..++......+...+|...++..... ..+......-+......++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHH
Confidence 3456788888888775432 2222 234455544444443356777777765542 2233444444555558889988
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 671 VLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 671 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
+...+..|...... ...-.+=++.++...|+.++|..+|+.+.
T Consensus 331 ~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888887653222 44555667778777899999999998874
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=81.27 E-value=15 Score=31.60 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=54.0
Q ss_pred ccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 719 VVSIGLLNQLLHLLGKSG---RIESMMKLFFKIVSSGAEAN--FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.++..+-.++++++.++. +..+.+.+++.+.++ -.|+ ....+.|+-++++.|+|++++.+.+..++ .+||..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 335666778999998875 677888999999862 3442 33555567779999999999999999887 456543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=80.79 E-value=55 Score=32.65 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=15.7
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 003122 767 LLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~~ 786 (846)
|.-.|+...|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 77788999898887776654
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.54 E-value=8 Score=41.71 Aligned_cols=99 Identities=8% Similarity=-0.121 Sum_probs=54.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
.|+...|...+..+....+.-.......++......|...+|-.++.+....... .+.++..+++++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHhcchhHHHHhhhHHHHHH
Confidence 4566666666555554433333444455555555555555565555554444422 344555666666666666666666
Q ss_pred HHHHHhcCCCc-CHHHHHHHHHH
Q 003122 745 FFKIVSSGAEA-NFNTYSILLKN 766 (846)
Q Consensus 745 ~~~~~~~g~~p-~~~~~~~l~~~ 766 (846)
|+.+++ +.| +.++-+.|..+
T Consensus 699 ~~~a~~--~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALK--LTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHh--cCCCChhhHHHHHHH
Confidence 666666 566 33344444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.49 E-value=1.2e+02 Score=34.96 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CccCHHHHHHHHHHHHh---
Q 003122 449 IDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRD-IKLNTVAYNSAIGSYMN--- 524 (846)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 524 (846)
...+.-.|+++.|++.+.. ..+...+.+.+...+.-|.-.+-..... ..+...+ -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4456678999999988877 2223445555554444433222111111 1111110 01112557778888875
Q ss_pred cCCHHHHHHHHHHHhhC
Q 003122 525 VGEYEKAIALYKCMKKR 541 (846)
Q Consensus 525 ~g~~~~A~~~~~~~~~~ 541 (846)
..+..+|++.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35678888877766654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 846 | ||||
| 3spa_A | 1134 | Crystal Structure Of Human Mitochondrial Rna Polyme | 5e-04 |
| >pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase Length = 1134 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.7 bits (218), Expect = 4e-18
Identities = 23/225 (10%), Positives = 61/225 (27%), Gaps = 6/225 (2%)
Query: 186 MQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGN 245
++ P E L+ +A ++ + C T
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 246 WREALKV---CKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTT 302
A + + L +N V+ + + + + ++K + PD +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 303 HNIVIYCLVKLGQYDKAI-DLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFN 361
+ + C+ + Q I M ++ + + ++ ++ V
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKL--QALFTAVLLSEEDRATVLKAVHKVKP 260
Query: 362 TMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPD 406
T P V+ + L+ + + +K +
Sbjct: 261 TFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.6 bits (210), Expect = 3e-17
Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 4/167 (2%)
Query: 325 SMREKRSECLPDIVTFTSIIHLYSVNGQIE---NCKGVFNTMLAEGLKPNIVSYNALMAA 381
S + +++ + + Q+ + V + + + YNA+M
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 382 YASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKA-REVFNMMRINNLKP 440
+A G KE + V +K GL PD++SY + L GR Q M LK
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 441 NLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAAC 487
+ + L+ +L +V P V+ LL
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.3 bits (209), Expect = 5e-17
Identities = 24/218 (11%), Positives = 66/218 (30%), Gaps = 4/218 (1%)
Query: 439 KPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCG---RKVN 495
P + L+ L + Q + + C +
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 496 IDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLIS 555
+ V + L YN+ + + G +++ + + +K + PD ++Y +
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 556 SCCRLSRYSEALG-FLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCS 614
R + + + L++M + L + ++S + ++ + +
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 615 PDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS 652
P + + +L + L L ++T +
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.9 bits (190), Expect = 9e-15
Identities = 30/273 (10%), Positives = 86/273 (31%), Gaps = 5/273 (1%)
Query: 67 QVSGLRKSDIPRRHRLAVEGNRFQKDWSVSEVVERVLELKHYEDVEGVLNRWVGRFARKN 126
+ +R + + ++ + F+ +V R+L + +E + +
Sbjct: 35 RTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQ 94
Query: 127 FPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGL---F 183
L++E + +++ Q + +Q + + +Q+ A L
Sbjct: 95 LARLLQEAPGKLSLD-VEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 184 FEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGST 243
++ R + YNA++ R G ++ + + + A + P +Y + G
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 244 GNWREALKVC-KKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTT 302
++ C ++M++ G+ + ++LS P
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
Query: 303 HNIVIYCLVKLGQYDKAIDLFHSMREKRSECLP 335
+ ++ + L ++ +
Sbjct: 274 TSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 1e-05
Identities = 18/189 (9%), Positives = 54/189 (28%), Gaps = 4/189 (2%)
Query: 636 ACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVL 695
A L P + L++ + + ++
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 696 ACSLLRDWK---TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG 752
C L + + ++++ + N ++ + G + ++ + F + +G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 753 AEANFNTYSILLKNLLAAGNWRKYIE-VLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYA 811
+ +Y+ L+ + IE L+ M G++ ++S +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 812 AIIQERIES 820
++
Sbjct: 256 HKVKPTFSL 264
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 3e-15
Identities = 54/429 (12%), Positives = 113/429 (26%), Gaps = 38/429 (8%)
Query: 233 YNNLINACGSTGNWREALKVCKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELM 291
+ + + L V + +G+ P V + + L
Sbjct: 75 IASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQRLLPVLC-- 130
Query: 292 KGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVN 350
+ + P+ L + + E +V S
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE---QVVAIASNGGGKQAL 187
Query: 351 GQIENCKGVFNTMLAEGLKPN-IVSYNALMAAYASHGMSKEALSVFNE-IKKNGLCPD-I 407
++ V A GL P +V+ + + + L V + P +
Sbjct: 188 ETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---PQQV 242
Query: 408 VSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV-SYSALIDAYGSNGLLAEAVEVFR 466
V+ S + + V + + L P V + ++ + + + V
Sbjct: 243 VAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC 300
Query: 467 EMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLN---TVAYNSAIGSYM 523
+ G+ P V +A+ G + + LL + L VA S G
Sbjct: 301 QAH--GLTPQQVVA---IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 355
Query: 524 NVGEYEKAIALYKCMKKRKVMPD-SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTN 582
+ ++ + + + + P+ V L L L + L P
Sbjct: 356 ALETVQRLLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-PEQV 412
Query: 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALF- 640
+S + + + G +P V+ + E +
Sbjct: 413 VAIASHDGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD 470
Query: 641 --LEMETNN 647
L TN+
Sbjct: 471 PALAALTND 479
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 4e-12
Identities = 52/391 (13%), Positives = 113/391 (28%), Gaps = 35/391 (8%)
Query: 264 DLVTHNIVLSAYKNGAQYSKALSYFE---LMKGTNIRPD-TTTHNIVIYCLVKLGQYDKA 319
L T ++ A + G +A+ + N+ P+ L +
Sbjct: 32 QLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRL 91
Query: 320 IDLFHSMREKRSECLPD-IVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPN-IVSYNA 377
+ + + P +V S ++ V A GL P +V+ +
Sbjct: 92 LPVL----CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPEQVVAIAS 145
Query: 378 LMAAYASHGMSKEALSVFNEIKKNGLCPD-IVSYTSLLNAYGRSQQPVKAREVFNMMRIN 436
+ + L V + +GL P+ +V+ S + + V + +
Sbjct: 146 HDGGKQALETVQALLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC--QAH 201
Query: 437 NLKPNL-VSYSALIDAYGSNGLLAEAVEVFRE-MEQDGIEPNIVSICTLLAACGRCGRKV 494
L P V+ ++ + + + V + + P V +A+ G + +
Sbjct: 202 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG---LTPQQVVA---IASNGGGKQAL 255
Query: 495 NIDAVLLAAEMRDIKLN---TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV-TY 550
LL + L VA S G + ++ + + + + P V
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC--QAHGLTPQQVVAI 313
Query: 551 TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKM 610
L L L + L P +S + + +
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASHDGGKQALETVQRLLPVLC--QA 370
Query: 611 SGCSPD-VITYTAMLHAYNTAEDWEKACALF 640
G +P+ V+ + E ++ +
Sbjct: 371 HGLTPEQVVAIASNGGGKQALETVQRLLPVL 401
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 9e-12
Identities = 51/424 (12%), Positives = 112/424 (26%), Gaps = 35/424 (8%)
Query: 194 DAETYNALISAHGRAGQWRWAMNIFDDMLRA-AVAPSR-STYNNLINACGSTGNWREALK 251
+ + + + +A + P + + + + L
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLC---QAHGLTPQQVVAIASHDGGKQALETVQRLLP 127
Query: 252 VCKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIVIYC 309
V + +G+ P+ V + L + + P+
Sbjct: 128 VLCQ--AHGLTPEQVVAIASHDGGKQALETVQALLPVLC--QAHGLTPEQVVAIASNGGG 183
Query: 310 LVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLK 369
L + + + + +V S ++ V A GL
Sbjct: 184 KQALETVQRLLPVLCQAHGLTPQ---QVVAIASNGGGKQALETVQRLLPVLCQ--AHGLT 238
Query: 370 PN-IVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPD-IVSYTSLLNAYGRSQQPVKAR 427
P +V+ + + + L V + +GL P +V+ S + +
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNSGGKQALETVQRLL 296
Query: 428 EVFNMMRINNLKPNLVS-YSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAA 486
V + + L P V ++ + + + V + G+ P V +A+
Sbjct: 297 PVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTPQQVVA---IAS 349
Query: 487 CGRCGRKVNIDAVLLAAEMRDIKLN---TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKV 543
+ + LL + L VA S G + ++ + + + +
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC--QAHGL 407
Query: 544 MPD-SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAE 602
P+ V L L L + L P +S I
Sbjct: 408 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASNGGGRPALESIVAQL 466
Query: 603 SMFN 606
S +
Sbjct: 467 SRPD 470
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 38/296 (12%), Positives = 84/296 (28%), Gaps = 25/296 (8%)
Query: 365 AEGLKPN-IVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPD-IVSYTSLLNAYGRSQQ 422
L P +V+ + + + L V + +GL P +V+ S +
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASHDGGKQALET 121
Query: 423 PVKAREVFNMMRINNLKPNLV-SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSIC 481
+ V + + L P V + ++ + + + V + + P V
Sbjct: 122 VQRLLPVLC--QAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHG--LTPEQV--- 174
Query: 482 TLLAACGRCGRKVNIDAVLLAAEMRDIKLNT---VAYNSAIGSYMNVGEYEKAIALYKCM 538
+A+ G + + LL + L VA S G + ++ + +
Sbjct: 175 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC-- 232
Query: 539 KKRKVMPD-SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGL 597
+ + P V L L L + L P +S
Sbjct: 233 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASNSGGKQALET 291
Query: 598 IAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALF---LEMETNNIE 649
+ + + G +P V+ + E ++ + + +
Sbjct: 292 VQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 345
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 24/285 (8%), Positives = 60/285 (21%), Gaps = 65/285 (22%)
Query: 192 KPD-AETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRS-TYNNLINACGSTGNWREA 249
P + + + + + P + + + +
Sbjct: 272 TPQQVVAIASNSGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALETVQRL 329
Query: 250 LKVCKKMTENGVGPDL-VTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIVI 307
L V + + P V + + L + + P+
Sbjct: 330 LPVLCQAHG--LTPQQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPEQVVAIASNG 385
Query: 308 YCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEG 367
L + + + C+ A G
Sbjct: 386 GGKQALETVQRLLPVL--------------------------------CQ-------AHG 406
Query: 368 LKPN-IVSYNALMAAYASHGMSKEALSVFN---EIKKNGLCPDIVSYTSLLNAYGRSQQP 423
L P +V+ + + + L V + +V+ S +
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ----QVVAIASNGGGRPALESI 462
Query: 424 VKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREM 468
V + N + A G A++ +++
Sbjct: 463 VAQLSRPD--PALAALTN-----DHLVALACLG-GRPALDAVKKL 499
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 27/207 (13%), Positives = 55/207 (26%), Gaps = 18/207 (8%)
Query: 451 AYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKL 510
A LL A E+ Q ++ + +A G + A A + L
Sbjct: 13 ARALEALLTVAGELRGPPLQ--LDTGQLLK---IAKRGGVTAVEAVHAWRNALTGAPLNL 67
Query: 511 N---TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV-TYTVLISSCCRLSRYSEA 566
VA S G + ++ + + + + P V L
Sbjct: 68 TPEQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASHDGGKQALETVQRL 125
Query: 567 LGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLH 625
L L + L P +S + + + G +P+ V+ +
Sbjct: 126 LPVLCQAHGLT-PEQVVAIASHDGGKQALETVQALLPVLC--QAHGLTPEQVVAIASNGG 182
Query: 626 AYNTAEDWEKACALF---LEMETNNIE 649
E ++ + + +
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVV 209
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-13
Identities = 64/418 (15%), Positives = 141/418 (33%), Gaps = 65/418 (15%)
Query: 198 YNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRS-TYNNLINACGSTGNWREALKVCKKM 256
L +AG + A + R P + L + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59
Query: 257 TENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIVIYCLVKLG 314
+ P L ++ + + YK Q +A+ ++ ++PD + + LV G
Sbjct: 60 IK--QNPLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAG 115
Query: 315 QYDKAIDLFHSMREKRSECLPDIV-TFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV 373
+ A+ + S + PD+ + + +L G++E K + + +PN
Sbjct: 116 DMEGAVQAYVSALQYN----PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFA 169
Query: 374 -SYNALMAAYASHGMSKEALSVFNE-IKKNGLCPDIV-SYTSLLNAYGRSQQPVKAREVF 430
+++ L + + G A+ F + + + P+ + +Y +L N ++ +A +
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 431 NMMRINNLKPNLV-SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGR 489
R +L PN + L Y GL+ A++ +R + ++P+
Sbjct: 227 L--RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPH------------- 269
Query: 490 CGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV- 548
AY + + G +A Y ++ P
Sbjct: 270 ---------------------FPDAYCNLANALKEKGSVAEAEDCYN--TALRLCPTHAD 306
Query: 549 TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606
+ L + EA+ + +++ P +S++ S +QG + EA +
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 54/288 (18%), Positives = 103/288 (35%), Gaps = 32/288 (11%)
Query: 192 KPD-AETYNALISAHGRAGQWRWAMNIFDDMLRA----AVAPSRSTYNNLINACGSTGNW 246
KPD + Y L +A AG A+ + L+ ++L N + G
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV-----RSDLGNLLKALGRL 151
Query: 247 REALKVCKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHN 304
EA K E P+ + + + + A+ +FE K + P+ +
Sbjct: 152 EEAKACYLKAIE--TQPNFAVAWSNLGCVFNAQGEIWLAIHHFE--KAVTLDPNFLDAYI 207
Query: 305 IVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIV-TFTSIIHLYSVNGQIENCKGVFNTM 363
+ L + +D+A+ + + P+ ++ +Y G I+ +
Sbjct: 208 NLGNVLKEARIFDRAVAAY----LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263
Query: 364 LAEGLKPNIV-SYNALMAAYASHGMSKEALSVFNE-IKKNGLCPDIV-SYTSLLNAYGRS 420
+ L+P+ +Y L A G EA +N ++ LCP S +L N
Sbjct: 264 IE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR---LCPTHADSLNNLANIKREQ 318
Query: 421 QQPVKAREVFNMMRINNLKPNLV-SYSALIDAYGSNGLLAEAVEVFRE 467
+A ++ + + P ++S L G L EA+ ++E
Sbjct: 319 GNIEEAVRLYR--KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 25/235 (10%)
Query: 192 KPD-AETYNALISAHGRAGQWRWAMNIFDDMLRA-AVAPSRS-TYNNLINACGSTGNWRE 248
+P+ A ++ L G+ A++ F+ +A + P+ Y NL N +
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDR 221
Query: 249 ALKVCKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIV 306
A+ + + P+ H + Y A+ + + ++P + +
Sbjct: 222 AVAAYLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNL 277
Query: 307 IYCLVKLGQYDKAIDLFHSMREKRSECLPDIV-TFTSIIHLYSVNGQIENCKGVFNTMLA 365
L + G +A D + P + ++ ++ G IE ++ L
Sbjct: 278 ANALKEKGSVAEAEDCY----NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333
Query: 366 EGLKPNIV-SYNALMAAYASHGMSKEALSVFNE-IKKNGLCPDIV-SYTSLLNAY 417
+ P +++ L + G +EAL + E I+ + P +Y+++ N
Sbjct: 334 --VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNMGNTL 383
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 2e-12
Identities = 105/752 (13%), Positives = 215/752 (28%), Gaps = 262/752 (34%)
Query: 55 VDYDKGQHEVSTQVSGLRKSDIPRRHRLAVEGNRFQKDWSVSEVVE---RVLELKHYEDV 111
+D++ G+H+ + DI L+V + F ++ +V + +L + + +
Sbjct: 7 MDFETGEHQYQYK-------DI-----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
Query: 112 ---------------------EGVLNRWVGRFARKNFPFLIKEITQRGAINHSNQVFNWM 150
E ++ ++V R N+ FL+ I Q
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-----QRQP---S 106
Query: 151 KNQKNYC-ARNDIYN---MMIRLH-ARHNQIDKARGLFFEMQKWRCKPDAETYNALISAH 205
+ Y R+ +YN + + + +R K R E++ +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP----------AKNVLID 156
Query: 206 GRAG---QWRWAMNIFDDMLRAAVAPSRSTYNNL--------INACGSTGNWREAL-KVC 253
G G W + V S + + C S E L K+
Sbjct: 157 GVLGSGKTW----------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 254 KKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKL 313
++ N + NI L + Q + N CL+ L
Sbjct: 207 YQIDPNWTSRSDHSSNIKLR--IHSIQAEL-RRLLKSKPYEN-------------CLLVL 250
Query: 314 GQYD-----KAIDLFHSMREK-----RSECLPDIVTFTSIIHLYSVNGQI----ENCKGV 359
KA + F ++ K R + + D ++ + H+ + + + K +
Sbjct: 251 ---LNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 360 FNTML---AEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNA 416
L + L +++ N LS+ E ++G +N
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPR------------RLSIIAESIRDG--LATWDNWKHVN- 351
Query: 417 YGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPN 476
+ E +N L+P + + + VF
Sbjct: 352 ---CDKLTTIIESS----LNVLEPAEYR-----KMF-------DRLSVFPP---S----- 384
Query: 477 IVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYK 536
+I +LL+ + + +V + + + + K
Sbjct: 385 -----------------AHIPTILLS------LI-----------WFDVIKSDVMVVVNK 410
Query: 537 CMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTN--QVYSSVISAYSK 594
K V T+ I ++LK+ L N ++ S++ Y+
Sbjct: 411 LHKYSLVEKQPKESTISI---------------PSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 595 QGLIAEAESMFNMMKMSGCSPDV--------ITYTAMLHAYNT--AEDWEKACALFLE-- 642
++ + P I + H N E +FL+
Sbjct: 456 P------KTFDS----DDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVFLDFR 501
Query: 643 -METNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701
+E I DS A +A N L +F + I +D + +V
Sbjct: 502 FLE-QKIRHDSTAWNASGSILN-------TLQQLKFYKPY-ICDNDPKYERLV------- 545
Query: 702 DWKTTIDLIKQMEPSFH------VVSIGLLNQ 727
+D + ++E + ++ I L+ +
Sbjct: 546 --NAILDFLPKIEENLICSKYTDLLRIALMAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 1e-11
Identities = 73/511 (14%), Positives = 148/511 (28%), Gaps = 162/511 (31%)
Query: 315 QYDKAIDLFHSMREKRSEC--LPD----IVTFTSIIHLYSVNGQIENCKGVFNTMLAEG- 367
QY + +F +C + D I++ I H+ + +F T+L++
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 368 ----------LKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAY 417
L+ N Y LM+ + ++ +++ L D + N
Sbjct: 77 EMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVS 132
Query: 418 GRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNI 477
R Q +K R+ + L+P + G G
Sbjct: 133 -RLQPYLKLRQA-----LLELRPA--KNVLI---DGVLG--------------------- 160
Query: 478 VSICTLLAACGRCGRKVNIDAVLLAAE-MRDIKLNTVAYNSAIGSYMNVGEYEKAIALYK 536
G+ +A + K+ ++N+ + +
Sbjct: 161 ------------SGKTW------VALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLE 200
Query: 537 CMKK--RKVMPD-------SVTYTVLISSC-CRLSR------YSEALGFLD--------E 572
++K ++ P+ S + I S L R Y L L
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 573 MMDL--KIPLT---NQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAY 627
+L KI LT QV + +A + +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL---------------------- 298
Query: 628 NTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD 687
T ++ + +L+ ++ + + P ++ ++AE +R+ T+
Sbjct: 299 -TPDEVKSLLLKYLDCRPQDLPRE--VLT---------TNPRRLSIIAESIRDGLATWD- 345
Query: 688 SIFFEMVLACSLLRDWKTTIDL-IKQMEPS-----FHVVSIGLLN-----QLLHLL---G 733
++ V L T I+ + +EP+ F +S+ + LL L+
Sbjct: 346 --NWKHVNCDKL----TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 734 KSGRIESMMKLFFKIVSSGAEANFN--TYSI 762
+ ++ K S E T SI
Sbjct: 400 IKSDVMVVVNKLHK--YSLVEKQPKESTISI 428
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 61/508 (12%), Positives = 146/508 (28%), Gaps = 89/508 (17%)
Query: 161 DIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDD 220
D + Q A F + + L + G + A +
Sbjct: 85 DYLRLWRHDALMQQQYKCA--AFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142
Query: 221 MLRAAVAPSRSTYNNLINACGSTGNWREALKVC------KKMTENGVGPDLVTHNIVLSA 274
S + +W+ AL + +K +N + I L A
Sbjct: 143 --EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200
Query: 275 ---------YKNGAQYSKALSYFELMKGTNIRPDTT---THNIVIYCLVKLGQYDKAIDL 322
Y N + + +A ++ + + + + L ++D + L
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYK--EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKL 258
Query: 323 -FHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAA 381
+ + ++ + L + + ++ S ++ + ++ GL+ +
Sbjct: 259 NYSTYSKEDAAFLRSL--YMLKLNKTSHEDELRRAEDYLSS--INGLEKSSDLLLCKADT 314
Query: 382 YASHGMSKEALSVFNE-IKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKP 440
+ L++ + ++ + D+ Y L + S + K + N + + P
Sbjct: 315 LFVRSRFIDVLAITTKILEIDPYNLDV--YPLHLASLHESGEKNKLYLISN--DLVDRHP 370
Query: 441 NL-VSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAV 499
V++ A+ Y ++EA F
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFS--------------------------------- 397
Query: 500 LLAAEMRDIKLN---TVAYNSAIG-SYMNVGEYEKAIALYKCMKKRKVMPDSVT-YTVLI 554
+ ++ A+ S+ GE+++AI+ Y ++ + Y L
Sbjct: 398 ------KSSTMDPQFGPAWI-GFAHSFAIEGEHDQAISAYT--TAARLFQGTHLPYLFLG 448
Query: 555 SSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN-----MMK 609
+L A +L L + + + + + A + F + K
Sbjct: 449 MQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507
Query: 610 MSGCSPD-VITYTAMLHAYNTAEDWEKA 636
T+ + HAY + ++ A
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAA 535
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 54/490 (11%), Positives = 137/490 (27%), Gaps = 113/490 (23%)
Query: 136 QRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPD- 194
R ++N++ K + + +++ + D+A+ + +
Sbjct: 179 FRKDEKNANKLLMQDGGIKL---EASMCYLRGQVYTNLSNFDRAKECY--KEALMVDAKC 233
Query: 195 AETYNALISAHGRAGQWRWAMNI---FDDMLRAAVAPSRSTYNNLINACGSTGNWREALK 251
E ++ L+S H W + + + + A RS Y +N R A
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 252 VCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIVIYCL 310
+ NG+ +++ L+ K I P + + + L
Sbjct: 294 YLS--SINGLEKSSDLLLCKADTLFVRSRFIDVLAITT--KILEIDPYNLDVYPLHLASL 349
Query: 311 VKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKP 370
+ G+ +K + + + ++ P
Sbjct: 350 HESGEKNKLYLISNDL--------------------------VD-------------RHP 370
Query: 371 N-IVSYNALMAAYASHGMSKEALSVFN---EIKKNGLCPDIVSYTSLLNAYGRSQQPVKA 426
V++ A+ Y EA F+ + ++ +++ + +A
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ----FGPAWIGFAHSFAIEGEHDQA 426
Query: 427 REVFNMMRINNLKPNLVSYSALI---DAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTL 483
+ L ++ + + G + A E +
Sbjct: 427 ISAYT--TAARLFQG--THLPYLFLGMQHMQLGNILLANEYLQS---------------- 466
Query: 484 LAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGS-YMNVGEYEKAIALYK-----C 537
+ + + + N +G N + + AI ++
Sbjct: 467 ------------------SYALFQY--DPLLLN-ELGVVAFNKSDMQTAINHFQNALLLV 505
Query: 538 MKKRKVMPDSV-TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596
K + T+ L + +L Y A+ L++ + L V++++ Y +
Sbjct: 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK 564
Query: 597 LIAEAESMFN 606
+ A + +
Sbjct: 565 IPGLAITHLH 574
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 41/320 (12%), Positives = 103/320 (32%), Gaps = 28/320 (8%)
Query: 160 NDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFD 219
+Y + + + +++ +A + + ++ ++ + I
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSING--LEKSSDLLLCKADTLFVRSRFIDVLAITT 329
Query: 220 DMLRAAVAPSRS-TYNNLINACGSTGNWREALKVCKKMTENGVGPDL-VTHNIVLSAYKN 277
+L + P Y + + +G + + + + P+ VT V Y
Sbjct: 330 KILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLC 385
Query: 278 GAQYSKALSYFELMKGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPD 336
+ S+A YF K + + P + G++D+AI + +
Sbjct: 386 VNKISEARRYFS--KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY----TTAARLFQG 439
Query: 337 IVT-FTSIIHLYSVNGQIENCKGVFNTMLAEGLKP-NIVSYNALMAAYASHGMSKEALSV 394
+ + + G I + + L + + N L + + A++
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQS--SYALFQYDPLLLNELGVVAFNKSDMQTAINH 497
Query: 395 FN---EIKKNGLCPD---IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVS-YSA 447
F + K + ++ +L +AY + + A + N + L N + ++A
Sbjct: 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN--QGLLLSTNDANVHTA 555
Query: 448 LIDAYGSNGLLAEAVEVFRE 467
+ Y + A+ E
Sbjct: 556 IALVYLHKKIPGLAITHLHE 575
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 59/361 (16%), Positives = 99/361 (27%), Gaps = 128/361 (35%)
Query: 231 STYNNLINACGSTGNWREALKVCKK---MTENGVGPD----LVTHNIVLSAYKNGAQYSK 283
T +NL+ S G + A+ +CK+ E G D NI+ Y++ +Y
Sbjct: 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD 87
Query: 284 ALSYFELMKGTNIR--------PDT--TTHNI-VIYCLVKLGQYDKAIDLFH---SMREK 329
A + IR P T +N+ V+Y K G+Y +A L +REK
Sbjct: 88 AANLLN--DALAIREKTLGKDHPAVAATLNNLAVLYG--KRGKYKEAEPLCKRALEIREK 143
Query: 330 RSECL----PDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASH 385
L PD+ N L +
Sbjct: 144 V---LGKDHPDVAK----------------------------------QLNNLALLCQNQ 166
Query: 386 GMSKEALSVFN---EIKKNGLCPD----IVSYTSLLNAYGRSQQPVKA----REVFNMMR 434
G +E + EI + L PD + +L + Y + + +A +E+
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226
Query: 435 INNLKPN----LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIE-------PNIVSICTL 483
+ + G + E G P + +
Sbjct: 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG---EYGGWYKACKVDSPTVTTTLKN 283
Query: 484 LAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKC---MKK 540
L A Y G++E A L + +K
Sbjct: 284 LGAL----------------------------------YRRQGKFEAAETLEEAAMRSRK 309
Query: 541 R 541
+
Sbjct: 310 Q 310
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 48/254 (18%), Positives = 88/254 (34%), Gaps = 56/254 (22%)
Query: 193 PD-AETYNALISAHGRAGQWRWAMNIFDDMLRA----------AVAPSRSTYNNLINACG 241
PD A N L + +++ A N+ +D L AVA +T NNL G
Sbjct: 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA---ATLNNLAVLYG 122
Query: 242 STGNWREALKVCKK---MTENGVGPD----LVTHNIVLSAYKNGAQYSKALSYFELMKGT 294
G ++EA +CK+ + E +G D N + +N +Y + Y++ +
Sbjct: 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ--RAL 180
Query: 295 NIR--------PDT--TTHNIVIYCLVKLGQYDKAIDLFH-SMREKRSECL----PDI-V 338
I P+ T +N+ C +K G++ +A L+ + +
Sbjct: 181 EIYQTKLGPDDPNVAKTKNNLAS-CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239
Query: 339 TFTSIIHLYSVNGQIENCKGVFNTMLAEGLK--------PNIV-SYNALMAAYASHGMSK 389
+ G+ + G + G P + + L A Y G +
Sbjct: 240 IWMHAEEREECKGKQK--DGT--SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFE 295
Query: 390 EALSVFN---EIKK 400
A ++ +K
Sbjct: 296 AAETLEEAAMRSRK 309
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 54/347 (15%), Positives = 96/347 (27%), Gaps = 108/347 (31%)
Query: 298 PDT--TTHNIVIYCLVKLGQYDKAIDLFH---SMREKRS-ECLPDIVTFTSIIHLYSVNG 351
P T HN+VI G+Y+ A+ L EK S PD+ T
Sbjct: 24 PARLRTLHNLVI-QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVAT------------ 70
Query: 352 QIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFN---EIKKNGLCPD-- 406
N L Y K+A ++ N I++ L D
Sbjct: 71 ----------------------MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108
Query: 407 --IVSYTSLLNAYGRSQQPVKAREVFN---MMRINNLKPN----LVSYSALIDAYGSNGL 457
+ +L YG+ + +A + +R L + + L + G
Sbjct: 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168
Query: 458 LAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKL-----NT 512
E ++ A E+ KL N
Sbjct: 169 YEEVEYYYQR----------------------------------ALEIYQTKLGPDDPNV 194
Query: 513 -VAYNSAIGSYMNVGEYEKAIALYK---CMKKRKVM----PDS-VTYTVLISSCCRLSRY 563
N+ Y+ G++++A LYK + ++ + +
Sbjct: 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254
Query: 564 SEALGFLDEMMDLKI-----PLTNQVYSSVISAYSKQGLIAEAESMF 605
+ F + K P ++ + Y +QG AE++
Sbjct: 255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 1e-10
Identities = 59/428 (13%), Positives = 113/428 (26%), Gaps = 86/428 (20%)
Query: 232 TYNNLINACGSTGNWREALKVCKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFEL 290
+ + + L V + + P V + + L
Sbjct: 194 AIASNNGGKQALETVQRLLPVLCQAHG--LTPAQVVAIASHDGGKQALETMQRLLPVLC- 250
Query: 291 MKGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSV 349
+ + PD I L + + +
Sbjct: 251 -QAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQ------------------------ 285
Query: 350 NGQIENCKGVFNTMLAEGLKPN-IVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPD-I 407
A GL P+ +V+ + + + L V + +GL PD +
Sbjct: 286 ---------------AHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQA--HGLTPDQV 328
Query: 408 VSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFRE 467
V+ S + + V + + L P+ V A SNG +A+E +
Sbjct: 329 VAIASHDGGKQALETVQRLLPVLC--QAHGLTPDQV------VAIASNGGGKQALETVQR 380
Query: 468 MEQD-----GIEPNIVSICTLLAACGRCGRKVNIDAV--LLAAEMRDIKLNT---VAYNS 517
+ G+ P+ V A G K ++ V LL + L VA S
Sbjct: 381 LLPVLCQAHGLTPDQV------VAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 434
Query: 518 AIGSYMNVGEYEKAIALYKCMKKRKVM---PDSV-TYTVLISSCCRLSRYSEALGFLDEM 573
G + ++ + + + P V L + L L +
Sbjct: 435 HDGGKQALETVQRLLPVL-----CQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQA 489
Query: 574 MDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAED 632
L +S I + + + G +PD V+ + E
Sbjct: 490 HGLTPDQV-VAIASNIGGKQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQALET 546
Query: 633 WEKACALF 640
++ +
Sbjct: 547 VQRLLPVL 554
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 9e-07
Identities = 58/452 (12%), Positives = 124/452 (27%), Gaps = 60/452 (13%)
Query: 100 ERVLELKHYEDVEGVLNRWVGRFARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCAR 159
+ L V + + G+ A + L+ + Q + V +
Sbjct: 453 CQTHGLTP-AQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVV--------AIASN 503
Query: 160 NDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPD-AETYNALISAHGRAGQWRWAMNIF 218
+ + + +A GL PD + + + +
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGL---------TPDQVVAIASNGGGKQALETVQRLLPVL 554
Query: 219 DDMLRAAVAP-SRSTYNNLINACGSTGNWREALKVCKKMTENGVGPD-LVTHNIVLSAYK 276
+ P + + + L V + + +V + +
Sbjct: 555 CQAH--GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTQVQVVAIASNIGGKQ 610
Query: 277 NGAQYSKAL-SYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLP 335
+ L + T L + + + + P
Sbjct: 611 ALETVQRLLPVLCQAHGLT--PAQVVAIASHDGGKQALETVQRLLPVL----CQAHGLTP 664
Query: 336 DIVTFTSIIHLYSVNGQIENCKGVFNTML-----AEGLKPN-IVSYNALMAAYASHGMSK 389
D V + NG + +L A GL +V+ + + +
Sbjct: 665 DQVV------AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQ 718
Query: 390 EALSVFNEIKKNGLCPD-IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSAL 448
L V + GL PD +V+ S + + V + + L P V
Sbjct: 719 RLLPVLCQAH--GLTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPAQV----- 769
Query: 449 IDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAV--LLAAEMR 506
A SN +A+E + + + + +++ ++A G K ++ V LL +
Sbjct: 770 -VAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQ 828
Query: 507 DIKLNT---VAYNSAIGSYMNVGEYEKAIALY 535
L VA S IG + ++ + +
Sbjct: 829 AHGLTQDQVVAIASNIGGKQALETVQRLLPVL 860
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 9e-07
Identities = 43/299 (14%), Positives = 90/299 (30%), Gaps = 26/299 (8%)
Query: 362 TMLAEGLKP-NIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPD-IVSYTSLLNAYGR 419
T L P +V+ + + + L V + GL P +V+ S
Sbjct: 181 TGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAH--GLTPAQVVAIASHDGGKQA 238
Query: 420 SQQPVKAREVFNMMRINNLKPNLV-SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIV 478
+ + V + + L P+ V + ++ I + + + V + G+ P+ V
Sbjct: 239 LETMQRLLPVLC--QAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAH--GLTPDQV 294
Query: 479 SICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNT---VAYNSAIGSYMNVGEYEKAIALY 535
+A+ G + + LL + L VA S G + ++ + +
Sbjct: 295 VA---IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 536 KCMKKRKVMPDSV-TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSK 594
+ + PD V L L L + L P +S
Sbjct: 352 C--QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-PDQVVAIAS-NGGKQA 407
Query: 595 QGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALF---LEMETNNIE 649
+ + + G +PD V+ + E ++ + + +
Sbjct: 408 LETVQRLLPVLC--QAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV 464
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 8e-06
Identities = 55/462 (11%), Positives = 116/462 (25%), Gaps = 73/462 (15%)
Query: 192 KPD-AETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRS-TYNNLINACGSTGNWREA 249
PD + + + + + P + + + +
Sbjct: 324 TPDQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASNGGGKQALETVQRL 381
Query: 250 LKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIVIY 308
L V + +G+ PD V + + L + + PD
Sbjct: 382 LPVLCQ--AHGLTPDQVVAIASNGGKQALETVQRLLPVLC--QAHGLTPDQVVAIASHDG 437
Query: 309 CLVKLGQYDKAIDLFHSMREKRSECLPD---------------------IVTFTSIIHL- 346
L + + + + P + L
Sbjct: 438 GKQALETVQRLLPVL----CQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493
Query: 347 ------YSVNGQIENCKGVFNTML-----AEGLKPN-IVSYNALMAAYASHGMSKEALSV 394
+ N + +L A GL P+ +V+ + + + L V
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553
Query: 395 FNEIKKNGLCPD-IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYG 453
+ +GL PD +V+ S + + V + + L + A
Sbjct: 554 LCQA--HGLTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTQVQ------VVAIA 603
Query: 454 SNGLLAEAVEVFREMEQD-----GIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDI 508
SN +A+E + + G+ P V +A+ + + LL +
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQV---VAIASHDGGKQALETVQRLLPVLCQAH 660
Query: 509 KLNT---VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD-SVTYTVLISSCCRLSRYS 564
L VA S G + ++ + + + + + V L
Sbjct: 661 GLTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTQEQVVAIASNNGGKQALETVQ 718
Query: 565 EALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606
L L + L P +S + +
Sbjct: 719 RLLPVLCQAHGLT-PDQVVAIASNGGGKQALETVQRLLPVLC 759
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 44/250 (17%), Positives = 83/250 (33%), Gaps = 48/250 (19%)
Query: 193 PD-AETYNALISAHGRAGQWRWAMNIFDDMLRA----------AVAPSRSTYNNLINACG 241
PD A N L + +++ A ++ +D L AVA +T NNL G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVA---ATLNNLAVLYG 96
Query: 242 STGNWREALKVCKK---MTENGVGPD----LVTHNIVLSAYKNGAQYSKALSYFELMKGT 294
G ++EA +CK+ + E +G N + +N + + Y+ +
Sbjct: 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR--RAL 154
Query: 295 NIR--------PDT--TTHNIVIYCLVKLGQYDKAIDLFH-SMREKRSECL----PDI-V 338
I P+ T +N+ C +K G+Y A L+ + + D
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLAS-CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKP 213
Query: 339 TFTSIIHLYSVNGQIENCKGVFNTMLAE-GLKPN----IVSYNALMAAYASHGMSKEALS 393
+ + + K + + +L A Y G + A +
Sbjct: 214 IWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHT 273
Query: 394 VFN---EIKK 400
+ + +K
Sbjct: 274 LEDCASRNRK 283
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 52/350 (14%), Positives = 92/350 (26%), Gaps = 119/350 (34%)
Query: 232 TYNNLINACGSTGNWREALKVCKK---MTENGVGPD----LVTHNIVLSAYKNGAQYSKA 284
+ ++ + A+ +CK+ E G D NI+ Y++ +Y +A
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62
Query: 285 LSYFELMKGTNIR--------PDT--TTHNI-VIYCLVKLGQYDKAIDLFH---SMREKR 330
IR P T +N+ V+Y K G+Y +A L +REK
Sbjct: 63 AHLLN--DALAIREKTLGKDHPAVAATLNNLAVLYG--KRGKYKEAEPLCKRALEIREKV 118
Query: 331 SECL----PDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHG 386
L PD+ N L + G
Sbjct: 119 ---LGKFHPDVAK----------------------------------QLNNLALLCQNQG 141
Query: 387 MSKEALSVFN---EIKKNGLCPD----IVSYTSLLNAYGRSQQPVKA----REVFNMMRI 435
++E + EI L PD + +L + Y + + A +E+
Sbjct: 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201
Query: 436 NNLKPN----LVSYSALIDAYGSNGLLAEAVEVFR---EMEQDGIE-PNIVSICTLLAAC 487
+ + S ++ + ++ P + + L A
Sbjct: 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGAL 261
Query: 488 GRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKC 537
Y G+ E A L C
Sbjct: 262 ----------------------------------YRRQGKLEAAHTLEDC 277
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 42/314 (13%), Positives = 78/314 (24%), Gaps = 79/314 (25%)
Query: 374 SYNALMAAYASHGMSKEALSVFN---EIKKNGLCPD----IVSYTSLLNAYGRSQQPVKA 426
S + + A+ + E + D L Y + +A
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62
Query: 427 REVFN---MMRINNLKPN----LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVS 479
+ N +R L + + + L YG G EA + +
Sbjct: 63 AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR------------ 110
Query: 480 ICTLLAACGRCGRKVNIDAVLLAAEMRDIKL-----NT-VAYNSAIGS-YMNVGEYEKAI 532
A E+R+ L + N+ + N G+ E+
Sbjct: 111 ----------------------ALEIREKVLGKFHPDVAKQLNN-LALLCQNQGKAEEVE 147
Query: 533 ALY-KCMKKRKVM-----PD-SVTYTVLISSCCRLSRYSEALGFLDE---MMDLKI---- 578
Y + ++ P+ + T L S + +Y +A E K
Sbjct: 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV 207
Query: 579 -PLTNQVYSSVISAYSKQGLIAEAESMFN---MMKMSGC-SPDV-ITYTAMLHAYNTAED 632
++ + ++ K SP V T ++ Y
Sbjct: 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267
Query: 633 WEKACALF---LEM 643
E A L
Sbjct: 268 LEAAHTLEDCASRN 281
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 50/375 (13%), Positives = 112/375 (29%), Gaps = 37/375 (9%)
Query: 274 AYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSEC 333
++N +Y A+ Y+ ++ D ++ + C V +G K +++ ++
Sbjct: 16 FFRNK-KYDDAIKYYN--WALELKEDPVFYSNLSACYVSVGDLKKVVEMS-------TKA 65
Query: 334 L---PDIV-TFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSK 389
L PD G+ + + L + +A + ++K
Sbjct: 66 LELKPDYSKVLLRRASANEGLGKFADAMFDLS---VLSLNGDF--NDASIEPMLERNLNK 120
Query: 390 EALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALI 449
+A+S E + + + T L A+E + ++ S+ +
Sbjct: 121 QAMSKLKEKFGD-IDTATATPTELSTQP--------AKERKDKQENLPSVTSMASFFGIF 171
Query: 450 DAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIK 509
+ E+ E +E+ S + A + + L D K
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231
Query: 510 LN---TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEA 566
L ++ + A K K ++ P +Y + + +E
Sbjct: 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIK--KAIELFPRVNSYIYMALIMADRNDSTEY 289
Query: 567 LGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLH 625
+ D+ + L + VY +A F+ K P+ + Y +
Sbjct: 290 YNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD--KAKELDPENIFPYIQLAC 346
Query: 626 AYNTAEDWEKACALF 640
++ LF
Sbjct: 347 LAYRENKFDDCETLF 361
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 37/280 (13%), Positives = 82/280 (29%), Gaps = 30/280 (10%)
Query: 275 YKNGAQYSKALSYFE-----LMKGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMRE 328
K ++KA FE + ++ + A + +
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDI----K 261
Query: 329 KRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNALMAAYASHGM 387
K E P + ++ + + + F+ A L N Y
Sbjct: 262 KAIELFPRVNSYIYMALIMADRNDSTEYYNYFDK--ALKLDSNNSSVYYHRGQMNFILQN 319
Query: 388 SKEALSVFNEIKKNGLCPD-IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV-SY 445
+A F++ K+ L P+ I Y L R + +F+ P
Sbjct: 320 YDQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFS--EAKRKFPEAPEVP 375
Query: 446 SALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAAC----GRCGRKVNIDAVLL 501
+ + +A++ + + +E + I +A R ++ +
Sbjct: 376 NFFAEILTDKNDFDKALKQYDLAIE--LENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433
Query: 502 AAEMRD--IKLN---TVAYNSAIGSYMNVGEYEKAIALYK 536
A + + KL+ A + + ++AI L++
Sbjct: 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 64/454 (14%), Positives = 118/454 (25%), Gaps = 88/454 (19%)
Query: 192 KPD-AETYNALISAHGRAGQWRWAMNIFDDMLRAAVAP-----SRSTYNNLINACGSTGN 245
KPD ++ SA+ G++ AM ++ S +
Sbjct: 69 KPDYSKVLLRRASANEGLGKFADAMFDLS---VLSLNGDFNDASIEPMLERNLNKQAMSK 125
Query: 246 WREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMK--------GTNIR 297
+E T +N + S+F + K +
Sbjct: 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNE 185
Query: 298 PDTTTHN-IVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENC 356
D N + YDKA + F E L L
Sbjct: 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK---NNEDEKLKEKLAISLEH 242
Query: 357 KGVFNTML------------AEGLKPNIVSYNALMAAYASHGMSKEALSVFNE-IKKNGL 403
G+F + A L P + SY + A S E + F++ +K +
Sbjct: 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302
Query: 404 CPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV-SYSALIDAYGSNGLLAEAV 462
+ Y Q +A + F+ + L P + Y L +
Sbjct: 303 NSSV--YYHRGQMNFILQNYDQAGKDFD--KAKELDPENIFPYIQLACLAYRENKFDDCE 358
Query: 463 EVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSY 522
+F E ++ P + A
Sbjct: 359 TLFSEAKR--KFPEAPEVPNFFAEI----------------------------------L 382
Query: 523 MNVGEYEKAIALYKCMKKRKVMPDSVTY----------TVLISSCCRLSRYSEALGFLDE 572
+ +++KA+ Y + + L++ + + EA L++
Sbjct: 383 TDKNDFDKALKQYDLAIELE--NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440
Query: 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606
L P + Q + +Q I EA ++F
Sbjct: 441 ASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 29/180 (16%)
Query: 161 DIYNMMIRLHARHNQIDKARGLFFEMQK-WRCKPD-AETYNALISAHGRAGQWRWAMNIF 218
+Y +++ D+A F K P+ Y L R ++ +F
Sbjct: 305 SVYYHRGQMNFILQNYDQAGKDF---DKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361
Query: 219 DDMLRAAVAPSRS-TYNNLINACGSTGNWREALKVCKKMTE---------NGVGPDLVTH 268
+ R P N ++ +ALK E G+ P LV
Sbjct: 362 SEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAP-LVGK 418
Query: 269 NIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIY-----CLVKLGQYDKAIDLF 323
+L+ + +A + E K + + P + ++ D+AI LF
Sbjct: 419 ATLLTRNPTVENFIEATNLLE--KASKLDPR----SEQAKIGLAQMKLQQEDIDEAITLF 472
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 49/375 (13%), Positives = 118/375 (31%), Gaps = 75/375 (20%)
Query: 223 RAAVAPSRSTYNNLINACGSTGNWREALKVCKKM--TENGVGPDL-VTHNIVLSAYKNGA 279
+++ + G+ R + + L ++ + +AY
Sbjct: 44 GSSMCLE---LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG 100
Query: 280 QYSKALSYFE----LMKGTNIRPD--TTTHNI-VIYCLVKLGQYDKAIDLFH---SMREK 329
Y+KA+ Y + L K N R ++ N+ +G++D+A ++ +
Sbjct: 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL--KVMGRFDEAAICCERHLTLARQ 158
Query: 330 RSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSK 389
+ L + ++ ++Y G+ + K AL A + +
Sbjct: 159 LGDRLSEGRALYNLGNVYHAKGK--------HLGQRNPGKFGDDVKEALTRAVEFY---Q 207
Query: 390 EALSVFNEIKKNGLCPDI-VSYTSLLNAYGRSQQPVKAREVFN----MMR-INNLKPNLV 443
E L + ++ + +L N Y A E + R +
Sbjct: 208 ENLKLMRDLGDR---GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR 264
Query: 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAA 503
+ S L +++ G +A E ++ + LA
Sbjct: 265 ANSNLGNSHIFLGQFEDAAEHYKR------------------------------TLALAV 294
Query: 504 EMRDIKLNTVAYNSAIGS-YMNVGEYEKAIALYK---CMKKR-KVMPD-SVTYTVLISSC 557
E+ + ++ + S +G+ Y + E+ AI + + + + L ++
Sbjct: 295 ELGEREVEAQSCYS-LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353
Query: 558 CRLSRYSEALGFLDE 572
+ + AL + ++
Sbjct: 354 SAIGGHERALKYAEQ 368
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 20/152 (13%), Positives = 51/152 (33%), Gaps = 31/152 (20%)
Query: 195 AETYNALISAHGRAGQWRWAMNIFDDML--------RAAVAPSRSTYNNLINACGSTGNW 246
L + + G ++ A+ + L RAA +NL N+ G +
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER---RANSNLGNSHIFLGQF 279
Query: 247 REA-------LKVCKKMTEN-GVGPDLVTHNIVLSAYKNGAQYSKALSYFE----LMKGT 294
+A L + ++ E +++ + Y +++ A+ Y + +
Sbjct: 280 EDAAEHYKRTLALAVELGEREVEAQSC--YSLG-NTYTLLHEFNTAIEYHNRHLAIAQEL 336
Query: 295 NIRPD--TTTHNI-VIYCLVKLGQYDKAIDLF 323
R ++ + +G +++A+
Sbjct: 337 GDRIGEARACWSLGNAHS--AIGGHERALKYA 366
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 45/323 (13%), Positives = 89/323 (27%), Gaps = 90/323 (27%)
Query: 195 AETYNALISAHGRAGQWRWAMNIFDDML--------RAAVAPSRSTYNNLINACGSTGNW 246
+ Y+ L +A+ G + AM L R A + NL N G +
Sbjct: 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA---KSSGNLGNTLKVMGRF 142
Query: 247 REALKVCKK---MTE-------------------NGVGPDLVTHNIVLSAYKNGAQYSKA 284
EA C++ + + G L N ++A
Sbjct: 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202
Query: 285 LSYFE----LMKGTNIRPDTTT--HNI-VIYCLVKLGQYDKAIDLFH---SMREKRSECL 334
+ +++ LM+ R N+ Y LG + AI+ + +
Sbjct: 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYY--LLGDFQAAIEHHQERLRIARE----- 255
Query: 335 PDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSV 394
+ + + L ++ G ++A
Sbjct: 256 ------------------FGDRAAE------------RRANSNLGNSHIFLGQFEDAAEH 285
Query: 395 FN---EIKKN-GLCPDI-VSYTSLLNAYGRSQQPVKAREVFN----MMRINNLKPNL-VS 444
+ + G S SL N Y + A E N + + + +
Sbjct: 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345
Query: 445 YSALIDAYGSNGLLAEAVEVFRE 467
+L +A+ + G A++ +
Sbjct: 346 CWSLGNAHSAIGGHERALKYAEQ 368
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 49/405 (12%), Positives = 109/405 (26%), Gaps = 84/405 (20%)
Query: 274 AYKNGAQYSKALSYFEL----MKGTNIRPDT-TTHNIVIYCLVKLGQYDKAIDLFHSMRE 328
+ + + G++ + L G + F + +
Sbjct: 17 SSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ 76
Query: 329 KRSECLPDI-VTFTSIIHLYSVNGQIENCKGVFNTMLA----EGLKPNI-VSYNALMAAY 382
+E L + ++ + + Y G L + S L
Sbjct: 77 AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136
Query: 383 ASHGMSKEALSVFN---EIKKN-GLCPDI-VSYTSLLNAYGRSQQPVKAREVFNMMRINN 437
G EA + + G + +L N Y +
Sbjct: 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY------------------HA 178
Query: 438 LKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNID 497
+L + L AVE ++E
Sbjct: 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQE------------------------------ 208
Query: 498 AVLLAAEMRDIKLNTVAYNSAIGS-YMNVGEYEKAIALY-KCMKKRKVMPD----SVTYT 551
+ L ++ D A + +G+ Y +G+++ AI + + ++ + D +
Sbjct: 209 NLKLMRDLGDRGAQGRACGN-LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS 267
Query: 552 VLISSCCRLSRYSEALGFLDEMMDLKIPLTN-----QVYSSVISAYSKQGLIAEAESMFN 606
L +S L ++ +A + L + L Q S+ + Y+ A N
Sbjct: 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327
Query: 607 ----MMKMSGCSPDV-ITYTAMLHAYNTAEDWEKACALF---LEM 643
+ + G ++ +A++ E+A L++
Sbjct: 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 60/447 (13%), Positives = 124/447 (27%), Gaps = 59/447 (13%)
Query: 173 HNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRST 232
+ R L + K + ++ IFD L + + S
Sbjct: 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188
Query: 233 YNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMK 292
Y+ +AL+ T+ G K+ Y LS
Sbjct: 189 YDTAYA------LLSDALQRLYSATDEGY------LVANDLLTKSTDMYHSLLSANT--V 234
Query: 293 GTNIRPDT-TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNG 351
+R + A L ++ P ++ + +
Sbjct: 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLL----QESINLHPTPNSYIFLALTLADKE 290
Query: 352 QIENCKGVFNTMLAEGLKPN-IVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPD-IVS 409
+ F A L P +Y Y K A F + + L P+ +
Sbjct: 291 NSQEFFKFFQK--AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYP 346
Query: 410 YTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV-SYSALIDAYGSNGLLAEAVEVFREM 468
Y L + + ++ FN P L + + G A++ +
Sbjct: 347 YIQLACLLYKQGKFTESEAFFN--ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404
Query: 469 EQDGIEPNIVSICTLLAAC----GRCGRKVNIDAVLLAAEMRD---------IKLN---T 512
++ +E I + R+ + D L E + +L+
Sbjct: 405 KR--LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462
Query: 513 VAYNSAIGSYMNVGEYEKAIALY-KCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLD 571
A + + + ++AI L+ + M + + T ++ + L D
Sbjct: 463 QAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF----AEAAKIQKRLR-AD 517
Query: 572 EMMDLKIPLTNQVYSSVISAYSKQGLI 598
++ K+ LT ++ Y +G++
Sbjct: 518 PIISAKMELT-------LARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 46/383 (12%), Positives = 98/383 (25%), Gaps = 51/383 (13%)
Query: 233 YNNLINACGSTGNWREALKVCKKMTENGVGPDL-VTHNIVLSAYKNGAQYSKALSYFELM 291
N N + N+ EA+K + E + P+ V ++ + + Y + K + +
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTT-- 83
Query: 292 KGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVN 350
K I+PD + LG + A+ D + L
Sbjct: 84 KALEIKPDHSKALLRRASANESLGNFTDAMFDL-----SVLSLNGDFDGASIEPMLE--- 135
Query: 351 GQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSY 410
+ + + + S+ +F+ + +Y
Sbjct: 136 ------RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189
Query: 411 TSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQ 470
+ + Q + A S + + +
Sbjct: 190 DTAYALLSDALQ------------RLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP 237
Query: 471 DGIEPNIVSICTLLA-ACGRCGR----KVNIDAVLLAAEMRDIKLNTVAYNSAIGS-YMN 524
+ N +V + + ++ +Y + +
Sbjct: 238 --LRENAALALCYTGIFHFLKNNLLDAQVLLQESI------NLHPTPNSYIF-LALTLAD 288
Query: 525 VGEYEKAIALYKCMKKRKVMPD-SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQ 583
++ ++ K + P+ TY L Y A + L P
Sbjct: 289 KENSQEFFKFFQ--KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVY 345
Query: 584 VYSSVISAYSKQGLIAEAESMFN 606
Y + KQG E+E+ FN
Sbjct: 346 PYIQLACLLYKQGKFTESEAFFN 368
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 61/468 (13%), Positives = 127/468 (27%), Gaps = 90/468 (19%)
Query: 194 DAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRS-TYNNLINACGSTGNWREALKV 252
+ Y+ + + + G + L + P S +A S GN+ +A+
Sbjct: 58 EPVFYSNISACYISTGDLEKVIEFTTKAL--EIKPDHSKALLRRASANESLGNFTDAMFD 115
Query: 253 CKKMTENGVGPDLVTHNIVLSAYKNGAQ--YSKALSYFELMKGTNIRPDTTTHN------ 304
++ NG ++ A ++ LS E + +T+ +
Sbjct: 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175
Query: 305 --IVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNT 362
+ + + YD A L + L + N + ++++
Sbjct: 176 SHLEVSSVNTSSNYDTAYALL----SDALQRLYSA----TDEGYLVANDLLTKSTDMYHS 227
Query: 363 ML-----AEGLKPNIV-SYNALMAAYASHGMSKEALSVFNE-IKKNGLCPDIVSYTSLLN 415
+L + L+ N + + +A + E I + P SY L
Sbjct: 228 LLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---PTPNSYIFLAL 284
Query: 416 AYGRSQQPVKAREVFNMMRINNLKPNLV-SYSALIDAYGSNGLLAEAVEVFRE-MEQDGI 473
+ + + F + +L P +Y Y A E F++ +
Sbjct: 285 TLADKENSQEFFKFFQ--KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS---L 339
Query: 474 EPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIA 533
P N Y G++ ++ A
Sbjct: 340 NPE----------------------------------NVYPYIQLACLLYKQGKFTESEA 365
Query: 534 LYKCMKKRKVMPDSV-TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAY 592
+ K + P T + A+ D L+ + +++ +
Sbjct: 366 FFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE-EVQEKIHVGIGPLI 422
Query: 593 SKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA-EDWEKACAL 639
K ++A S +N A + KAC L
Sbjct: 423 GKATILARQSSQDPTQLDEE-------------KFNAAIKLLTKACEL 457
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 54/336 (16%), Positives = 111/336 (33%), Gaps = 46/336 (13%)
Query: 232 TYNNLINACGSTGNWREALKVCKKM----TENGVGPDL-VTHNIVLSAYKNGAQYSKALS 286
+G+ R + + TE+ L ++ + +AY Y+KAL
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTED--LKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 287 YFE----LMKGTNIRPDT-TTHNIVIYCLVKLGQYDKAIDLFH---SMREKRSECLPDI- 337
Y L + + + L LG +D+AI + + ++
Sbjct: 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEA 123
Query: 338 VTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNE 397
++ ++Y G+ C G +T N + A + Y +E LS+
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN--ALQAAVDLY------EENLSLVTA 175
Query: 398 IKKNGLCPDI-VSYTSLLNAYGRSQQPVKAREVFN----MMRINNLKPNL-VSYSALIDA 451
+ ++ +L N + A + + K +YS L +A
Sbjct: 176 LGDR---AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 232
Query: 452 YGSNGLLAEAVEVFRE----MEQDGIEPNIVSICTLLAAC----GRCGRKVN--IDAVLL 501
Y G A E +++ Q C L + ++ + + +
Sbjct: 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292
Query: 502 AAEMRDIKLNTVAYNSAIGS-YMNVGEYEKAIALYK 536
A E++D A S +G+ Y +G +++A+ +
Sbjct: 293 AQELKDRIGEGRACWS-LGNAYTALGNHDQAMHFAE 327
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 39/326 (11%), Positives = 85/326 (26%), Gaps = 63/326 (19%)
Query: 163 YNMMIRLHARHNQIDKARGLF---FEMQKWRCKPD-AETYNALISAHGRAGQWRWAMNIF 218
+ + F ++ + Y+ L +A+ + A+
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66
Query: 219 DDML--------RAAVAPSRSTYNNLINACGSTGNWREALKVCKK---MTE--------- 258
L + A NL N GN+ EA+ C++ ++
Sbjct: 67 HHDLTLARTIGDQLGEA---KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123
Query: 259 ---NGVG----------PDLVTHNIVLSAYKNGAQYSKALSYFE----LMKGTNIRPD-- 299
+G + A+ +E L+ R
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183
Query: 300 TTTHNI-VIYCLVKLGQYDKAIDLFH---SMREKRSECLPDIVTFTSIIHLYSVNGQ--- 352
N+ + LG + A+ + ++ + + ++++ + Y G+
Sbjct: 184 RAFGNLGNTHY--LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241
Query: 353 -IENCKGVFNTMLAEGLKPNI-VSYNALMAAYASHGMSKEALSVFN---EI-KKNGLCPD 406
E K + S +L Y ++A+ I ++
Sbjct: 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 301
Query: 407 I-VSYTSLLNAYGRSQQPVKAREVFN 431
+ SL NAY +A
Sbjct: 302 EGRACWSLGNAYTALGNHDQAMHFAE 327
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 32/199 (16%)
Query: 151 KNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFE----MQKWRCKPD-AETYNALISAH 205
+ + N + A L+ E + + + L + H
Sbjct: 134 HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTH 193
Query: 206 GRAGQWRWAMNIFDDML--------RAAVAPSRSTYNNLINACGSTGNWREALKVCKK-- 255
G +R A+ + L +AA Y+NL NA G + A + KK
Sbjct: 194 YLLGNFRDAVIAHEQRLLIAKEFGDKAAER---RAYSNLGNAYIFLGEFETASEYYKKTL 250
Query: 256 --MTENGVGPDLVT--HNIVLSAYKNGAQYSKALSYFE----LMKGTNIRPD--TTTHNI 305
+ +++ + Y Y KA+ Y + + R ++
Sbjct: 251 LLARQLKDRAVEAQSCYSLG-NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309
Query: 306 -VIYCLVKLGQYDKAIDLF 323
Y LG +D+A+
Sbjct: 310 GNAYT--ALGNHDQAMHFA 326
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 47/373 (12%), Positives = 100/373 (26%), Gaps = 73/373 (19%)
Query: 163 YNMMIRLHARHNQIDKARGLF---FEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFD 219
+ + F ++ K + Y+ L +A+ + A+
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 220 DML--------RAAVAPSRSTYNNLINACGSTGNWREALKVCKK---------------M 256
L + A NL N GN+ EA+ C++
Sbjct: 72 HDLTLARTIGDQLGEA---KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 257 TENGVG----------PDLVTHNIVLSAYKNGAQYSKALSYFE----LMKGTNIRPD--T 300
+G ++ + A+ ++E L+ R
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188
Query: 301 TTHNI-VIYCLVKLGQYDKAIDLFH---SMREKRSECLPDIVTFTSIIHLYSVNGQ---- 352
N+ + LG + A+ + ++ + + ++++ + Y G+
Sbjct: 189 AFGNLGNTHY--LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246
Query: 353 IENCKGVFNTMLAEGLKPNI-VSYNALMAAYASHGMSKEALSVFNE----IKKNGLCPDI 407
E K + S +L Y ++A+ + ++
Sbjct: 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306
Query: 408 -VSYTSLLNAYGRSQQPVKA-----------REVFNMMRINNLKPNL-VSYSALIDAYGS 454
+ SL NAY +A REV + + NL L +Y +
Sbjct: 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366
Query: 455 NGLLAEAVEVFRE 467
N +
Sbjct: 367 NNSIMSENTEIDS 379
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 54/336 (16%), Positives = 110/336 (32%), Gaps = 46/336 (13%)
Query: 232 TYNNLINACGSTGNWREALKVCKKM----TENGVGPDL-VTHNIVLSAYKNGAQYSKALS 286
+G+ R + + TE+ L ++ + +AY Y+KAL
Sbjct: 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTED--LKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 287 YFE----LMKGTNIRPDT-TTHNIVIYCLVKLGQYDKAIDLFH---SMREKRSECLPDI- 337
Y L + + + L LG +D+AI + + ++
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEA 127
Query: 338 VTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNE 397
++ ++Y G+ C G + + E + + A + Y +E LS+
Sbjct: 128 RALYNLGNVYHAKGKSFGCPGPQD--VGEFPEEVRDALQAAVDFY------EENLSLVTA 179
Query: 398 IKKNGLCPDI-VSYTSLLNAYGRSQQPVKAREVFN----MMR-INNLKPNLVSYSALIDA 451
+ ++ +L N + A + + + +YS L +A
Sbjct: 180 LGDR---AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236
Query: 452 YGSNGLLAEAVEVFRE----MEQDGIEPNIVSICTLLAACGRCGRKVN--ID----AVLL 501
Y G A E +++ Q C L + ID + +
Sbjct: 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296
Query: 502 AAEMRDIKLNTVAYNSAIGS-YMNVGEYEKAIALYK 536
A E+ D A S +G+ Y +G +++A+ +
Sbjct: 297 AQELNDRIGEGRACWS-LGNAYTALGNHDQAMHFAE 331
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 30/199 (15%), Positives = 60/199 (30%), Gaps = 32/199 (16%)
Query: 151 KNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFE----MQKWRCKPD-AETYNALISAH 205
+ ++ + + A + E + + + L + H
Sbjct: 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH 197
Query: 206 GRAGQWRWAMNIFDDML--------RAAVAPSRSTYNNLINACGSTGNWREALKVCKK-- 255
G +R A+ + L +AA Y+NL NA G + A + KK
Sbjct: 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAER---RAYSNLGNAYIFLGEFETASEYYKKTL 254
Query: 256 --MTENGVGPDLVT--HNIVLSAYKNGAQYSKALSYFE----LMKGTNIRPD--TTTHNI 305
+ +++ + Y KA+ Y + + N R ++
Sbjct: 255 LLARQLKDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313
Query: 306 -VIYCLVKLGQYDKAIDLF 323
Y LG +D+A+
Sbjct: 314 GNAYT--ALGNHDQAMHFA 330
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 45/392 (11%), Positives = 103/392 (26%), Gaps = 78/392 (19%)
Query: 309 CLVKLGQYDKAIDLFHSMREKRSECLPDI-VTFTSIIHLYSVNGQIENCKGVFNTMLA-- 365
L K G + F + + +E L + ++ + + Y + L
Sbjct: 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77
Query: 366 --EGLKPNI-VSYNALMAAYASHGMSKEALSVFNE----IKKNGLCPDI-VSYTSLLNAY 417
G + + L G EA+ ++ + +L N Y
Sbjct: 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137
Query: 418 GRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNI 477
L AV+ + E
Sbjct: 138 ---------------HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE---------- 172
Query: 478 VSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGS-YMNVGEYEKAIALY- 535
+ L + D A+ + +G+ + +G + A+ +
Sbjct: 173 --------------------NLSLVTALGDRAAQGRAFGN-LGNTHYLLGNFRDAVIAHE 211
Query: 536 KCMKKRKVMPD----SVTYTVLISSCCRLSRYSEALGFLDE--MMDLKI---PLTNQVYS 586
+ + K D Y+ L ++ L + A + + ++ ++ + Q
Sbjct: 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271
Query: 587 SVISAYSKQGLIAEAESMFN----MMKMSGCSPDV-ITYTAMLHAYNTAEDWEKACALF- 640
S+ + Y+ +A + + ++ +AY + ++A
Sbjct: 272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331
Query: 641 --LEM--ETNNIEPDSIACSALMRAFNKGGQP 668
LE+ E + + A L G
Sbjct: 332 KHLEISREVGDKSGELTARLNLSDLQMVLGLS 363
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 1e-07
Identities = 31/259 (11%), Positives = 80/259 (30%), Gaps = 18/259 (6%)
Query: 280 QYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVT 339
Y + ++ + +K ++ D + + +Y +D E + P++
Sbjct: 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD------EIKPSSAPELQA 67
Query: 340 FTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMA-AYASHGMSKEALSVFNEI 398
+ + + + + ++ + ++ + A Y AL ++
Sbjct: 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ- 126
Query: 399 KKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMM-RINNLKPNLVSYSALIDAYGSNGL 457
+ + + + AR+ M + +A +
Sbjct: 127 -----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181
Query: 458 LAEAVEVFREMEQDGIEPNIVSICTLLAAC-GRCGRKVNIDAVLLAAEMRDIKLNTVAYN 516
L +A +F+EM + + AAC GR + VL A +D +
Sbjct: 182 LQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLI 238
Query: 517 SAIGSYMNVGEYEKAIALY 535
+ + ++G+ + Y
Sbjct: 239 NLVVLSQHLGKPPEVTNRY 257
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 2e-05
Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 9/165 (5%)
Query: 161 DIYNMMIRLHARHNQIDKARGLFFEMQKWRCK-PDAETYNALISAHGRAGQWRWAMNIFD 219
+ M +++ + +++D AR +MQ + A +S + + A IF
Sbjct: 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ 190
Query: 220 DMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVG-PDLVTHNIVLSAYKNG 278
+M +P+ N + G W A V ++ + G P+ + + +VLS + G
Sbjct: 191 EMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL-G 248
Query: 279 AQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLF 323
Y +K + H + K +D+ + +
Sbjct: 249 KPPEVTNRYLSQLKDAH--RS---HPFIKEYRAKENDFDRLVLQY 288
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 31/223 (13%), Positives = 75/223 (33%), Gaps = 23/223 (10%)
Query: 232 TYNNLINACGSTGNWREALKVCKK-----MTENGVGPDLV-THNIVLSAYKNGAQYSKAL 285
+ + + ++ ++ L+ H++ + + + QY A+
Sbjct: 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAI 204
Query: 286 SYFE----LMKGTNIRPD--TTTHNI-VIYCLVKLGQYDKAIDLFH---SMREKRSECLP 335
S+F+ + + T +NI + QY+ AI F ++ E+ +
Sbjct: 205 SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--SQSQYEDAIPYFKRAIAVFEESNILPS 262
Query: 336 DIVTFTSIIHLYSVNGQIENCKGVFNTMLA----EGLKPNIVSYNALMAAYASHGMSKEA 391
+ I ++ G+I+ + +A G + + L + Y S +
Sbjct: 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322
Query: 392 LSVFNEIKKNGLCPDIVSYTSLL-NAYGRSQQPVKAREVFNMM 433
F+ ++ L D+ + + Y + KA F +
Sbjct: 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 29/221 (13%), Positives = 65/221 (29%), Gaps = 23/221 (10%)
Query: 139 AINHSNQVFNWMKNQKNYCARN-DIYNMMIRLHARHNQIDKARGLFFE-MQKWRCKPD-- 194
+++++ Q + K + Y R +++ Q + A F + +
Sbjct: 162 SMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ 221
Query: 195 --AETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPS-----RSTYNNLINACGSTGNWR 247
T + Q+ A+ F + + Y + G
Sbjct: 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKID 281
Query: 248 EALKVCKK----MTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDT--T 301
+A + K + G L + S Y +G +F+ ++ + D
Sbjct: 282 KAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341
Query: 302 THNIVIYCLVKLGQYDKAIDLF---HSMREK--RSECLPDI 337
++ Y + + KA F +R+ L +I
Sbjct: 342 AIDVAKYYH-ERKNFQKASAYFLKVEQVRQLIQGGVSLYEI 381
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 3e-07
Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 27/150 (18%)
Query: 195 AETYNALISAHGRAGQWRWAMNIFDDML--------RAAVAPSRSTYNNLINACGSTGNW 246
+ L + H G +R A+ + L +AA Y+NL NA G +
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER---IAYSNLGNAYIFLGEF 65
Query: 247 REALKVCKK----MTENGVGPDLVT--HNIVLSAYKNGAQYSKALSYFE----LMKGTNI 296
A + KK + +++ Y Y KA+ Y + +
Sbjct: 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGN-TYTLLQDYEKAIDYHLKHLAIAQELKD 124
Query: 297 RPD--TTTHNI-VIYCLVKLGQYDKAIDLF 323
R ++ Y LG +D+A+
Sbjct: 125 RIGEGRACWSLGNAYT--ALGNHDQAMHFA 152
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 9e-06
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 23/117 (19%)
Query: 223 RAAVAPSRSTYNNLINACGSTGNWREALKVCKK----MTENGVGPDLVTHNIVLS----A 274
RAA + NL N GN+R+A+ ++ E G D I S A
Sbjct: 5 RAAQG---RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG---DKAAERIAYSNLGNA 58
Query: 275 YKNGAQYSKALSYFE----LMKGTNIRPD--TTTHNI-VIYCLVKLGQYDKAIDLFH 324
Y ++ A Y++ L + R + +++ Y L Y+KAID
Sbjct: 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT--LLQDYEKAIDYHL 113
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 49/347 (14%), Positives = 93/347 (26%), Gaps = 81/347 (23%)
Query: 301 TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPD------IVTFTSIIHLYSVNGQIE 354
T N++ Y GQ + A++ E + D +VT+ + +Y G++
Sbjct: 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLS 111
Query: 355 NCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMS---------KEALSVFNE-IKKNGLC 404
+ + + + K + G + + A F + ++K
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--- 168
Query: 405 PDIV-SYTSLLNAYGRSQQPVKAREVFNMMRIN-NLKPNLVSY-----SALIDAYGSNGL 457
P + L A R ++ + +R L P+ L
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228
Query: 458 LAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNS 517
E ++ E + P T S
Sbjct: 229 EGEGEKLVEEALE--KAPG----------------------------------VTDVLRS 252
Query: 518 AIGSYMNVGEYEKAIALYK------------------CMKKRKVMPDSVTYTVLISSCCR 559
A Y E +KAI L K C + + ++ +
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Query: 560 LSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606
L A+ L + + +V S + S ++ EAE F
Sbjct: 313 LELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQ 358
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 55/461 (11%), Positives = 102/461 (22%), Gaps = 100/461 (21%)
Query: 192 KPDAETYNALISAHGRAGQWRWAMNIF--------DDMLRAAVAPSRSTYNNLINACGST 243
+ A N L GQ A+ + A S T+ N
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 244 GNWREALKVCKKMTE---------NGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGT 294
G + K+ P+L G Q +A FE K
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFE--KAL 165
Query: 295 NIRPD-TTTHN---IVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTF-----TSIIH 345
+P + I Y L AID + PD +
Sbjct: 166 EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL----RQAIRLNPDNQYLKVLLALKLHK 221
Query: 346 LYSVNGQIENCKGVFNTMLAEGLKP-NIVSYNALMAAYASHGMSKEALSVFN---EIKKN 401
+ + + + L P + Y +A+ + E N
Sbjct: 222 MREEGEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 402 --------GLC-------PDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV-SY 445
G C + + + A + + NL
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK--KADEANDNLFRVC 337
Query: 446 SALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEM 505
S L + EA F++ + E+
Sbjct: 338 SILASLHALADQYEEAEYYFQK--------------------------------EFSKEL 365
Query: 506 RDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSE 565
+ + + +KAI + + K+ S + +
Sbjct: 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI--EGVKINQKSREKEKMK----------D 413
Query: 566 ALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606
L + +M K ++ + + +A+
Sbjct: 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 40/288 (13%), Positives = 74/288 (25%), Gaps = 68/288 (23%)
Query: 268 HNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSM 326
+KN Y++A+ F K + + +N C +L +YD A
Sbjct: 7 FRYADFLFKNN-NYAEAIEVFN--KLEAKKYNSPYIYNRRAVCYYELAKYDLAQK----- 58
Query: 327 REKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNALMAAYASH 385
DI T+ S + +
Sbjct: 59 ---------DIETYFSKV----------------------NATKAKSADFEYYGKILMKK 87
Query: 386 GMSKEALSVFN---EIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNL 442
G A+ + + + Y + + + A + +
Sbjct: 88 GQDSLAIQQYQAAVDRDTT----RLDMYGQIGSYFYNKGNFPLAIQYME--KQIRPTTTD 141
Query: 443 V-SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVS----ICTLLAACGRCGRKVNID 497
+ L AY N +A F ++ + ++PNI AA ++
Sbjct: 142 PKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQ--GL 197
Query: 498 AV--------LLAAEMRDIKLNTV-AYNSAIGSYMNVGEYEKAIALYK 536
A + A K + A Y + KA A +K
Sbjct: 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 9e-07
Identities = 36/251 (14%), Positives = 69/251 (27%), Gaps = 28/251 (11%)
Query: 233 YNNLINACGSTGNWREALKVCKKMTENGVGPD-LVTHNIVLSAYKNGAQYSKALSYFE-L 290
+ N+ EA++V K+ + +N Y A+Y A E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 291 MKGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIV-TFTSIIHLYS 348
N + L+K GQ AI + + + + + I +
Sbjct: 64 FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY----QAAVDRDTTRLDMYGQIGSYFY 119
Query: 349 VNGQIENCKGVFNTMLAEGLKPN-IVSYNALMAAYASHGMSKEALSVFNE-IKKNGLCPD 406
G + + L AY + +A S F + ++ P+
Sbjct: 120 NKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK---PN 174
Query: 407 IV-SYTSLLNAY---GRSQQPVKAREVFNM------MRINNLKPNLV-SYSALIDAYGSN 455
I Y A + A+ + K L+ + + Y N
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 456 GLLAEAVEVFR 466
+A ++
Sbjct: 235 RDKVKADAAWK 245
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 36/336 (10%), Positives = 102/336 (30%), Gaps = 51/336 (15%)
Query: 274 AYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSE 332
+ + P + + I LV+L + ++ L H + +
Sbjct: 31 RHYYNCDFKMCYKLTS--VVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88
Query: 333 CLPDIVTFTSI-IHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNALMAAYASHGMSKE 390
+ V++ ++ + V + E+ + + L+ ++ A ++A +
Sbjct: 89 ---NPVSWFAVGCYYLMVGHKNEHARRYLSKATT--LEKTYGPAWIAYGHSFAVESEHDQ 143
Query: 391 ALSVFN---EIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNM-MRINNLKPNLVSYS 446
A++ + ++ K + + YG + A F+ + I P +
Sbjct: 144 AMAAYFTAAQLMKG----CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV--MH 197
Query: 447 ALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR 506
+ NG A + F + A ++ +
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLD-----------------A----------LEKIKAIGNEV 230
Query: 507 DIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV-TYTVLISSCCRLSRYSE 565
+ N+ + +Y +A+ ++ + ++P + TY+ + + +
Sbjct: 231 TVDKWEPLLNNLGHVCRKLKKYAEALDYHR--QALVLIPQNASTYSAIGYIHSLMGNFEN 288
Query: 566 ALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEA 601
A+ + + L+ + + +EA
Sbjct: 289 AVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 38/352 (10%), Positives = 92/352 (26%), Gaps = 69/352 (19%)
Query: 233 YNNLINACGSTGNWREALKVCKKMTENGVGPDLVT-HNIVLSAYKNGAQYSKALSYFELM 291
+L +++ K+ + E P + + + + ++
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVME--KDPFHASCLPVHIGTLVELNKANELFYLSH-- 80
Query: 292 KGTNIRPDT-TTHNIVIYCLVKLGQ-YDKAIDLFHSMREKRSECLPDIV-TFTSIIHLYS 348
K ++ P + V + +G + A K + + + H ++
Sbjct: 81 KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL----SKATTLEKTYGPAWIAYGHSFA 136
Query: 349 VNGQIENCKGVFNTMLAEGLKPNIVSYNALM---AAYASHGMSKEALSVFNEIKKNGLCP 405
V + + + T L + ++ Y SK A F++ + P
Sbjct: 137 VESEHDQAMAAYFTAAQ--LMKG--CHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAP 190
Query: 406 -DIVSYTSLLNAYGRSQQPVKAREVFN--------MMRINNLKPNLVSYSALIDAYGSNG 456
D + ++ + A + F + + + L
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250
Query: 457 LLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYN 516
AEA++ R+ + P S + +
Sbjct: 251 KYAEALDYHRQALV--LIPQNASTYSAIGYI----------------------------- 279
Query: 517 SAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR-LSRYSEAL 567
+ +G +E A+ + + D ++ C SEA
Sbjct: 280 -----HSLMGNFENAVDYFH--TALGLRRDDTFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 17/147 (11%)
Query: 190 RCKPD-AETYNALISAHGRAGQWRWAMNIFDDMLRA-AVAPSRS-TYNNLINACGSTGNW 246
+ + +G + A F +A ++AP + + G W
Sbjct: 153 QLMKGCHLPMLYIGLEYGLTNNSKLAERFFS---QALSIAPEDPFVMHEVGVVAFQNGEW 209
Query: 247 REALKVCKK-------MTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRP 298
+ A K + N + + +Y++AL Y + + P
Sbjct: 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR--QALVLIP 267
Query: 299 D-TTTHNIVIYCLVKLGQYDKAIDLFH 324
+T++ + Y +G ++ A+D FH
Sbjct: 268 QNASTYSAIGYIHSLMGNFENAVDYFH 294
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 29/226 (12%), Positives = 59/226 (26%), Gaps = 41/226 (18%)
Query: 174 NQIDKARGLFFEMQK------WRCKPD----AETYNALISAHGRAGQWRWAMNIF----- 218
+I +A + +K + KPD A Y A A Q A + +
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 219 -----DDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLS 273
+ AA + EA++ +K + + + T +
Sbjct: 65 AHANNRSLFHAA-----KAFEQAGMMLKDLQRMPEAVQYIEKASV--MYVENGTPDTAAM 117
Query: 274 AYKNGA------QYSKALSYFE-----LMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDL 322
A SKA+ ++ +R LV+ ++D+A
Sbjct: 118 ALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAAS 177
Query: 323 FHSMREKRSEC--LPDIV-TFTSIIHLYSVNGQIENCKGVFNTMLA 365
+ E P + + + + +
Sbjct: 178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 70/448 (15%), Positives = 118/448 (26%), Gaps = 106/448 (23%)
Query: 194 DAETYNALISAHGRAGQWRWAMNIFDDMLRAAVA--PSR-STYNNLINACGSTGNWREAL 250
D E + L AGQ A++ F AAV P Y + G + AL
Sbjct: 25 DVEKHLELGKKLLAAGQLADALSQFH----AAVDGDPDNYIAYYRRATVFLAMGKSKAAL 80
Query: 251 KVCKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTT------- 302
K+ + + D + +A F+ K P
Sbjct: 81 PDLTKVIQ--LKMDFTAARLQRGHLLLKQGKLDEAEDDFK--KVLKSNPSENEEKEAQSQ 136
Query: 303 ---------HNIVIYCLVKLGQYDKAIDLF----------HSMREKRSECLPDIVTFTSI 343
G Y AI +RE R+EC
Sbjct: 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE------ 190
Query: 344 IHLYSVNGQIENCKGVFNTMLAEGLKP-NIVSYNALMAAYASHGMSKEALSVFNEIKKNG 402
G+ LK N ++ + Y G + +LS E K
Sbjct: 191 -------GEPRKAISDLKAASK--LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK-- 239
Query: 403 LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAV 462
L D + Y + ++ K E +G +A
Sbjct: 240 LDQD---HKRCFAHYKQVKKLNKLIESAE-------------------ELIRDGRYTDAT 277
Query: 463 EVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRD---------IKLN-- 511
+ + + EP+I T+ + C E +++
Sbjct: 278 SKYESVMK--TEPSIAEY-TVRSKERIC-------HCFSKDEKPVEAIRVCSEVLQMEPD 327
Query: 512 -TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFL 570
A +Y+ Y++AI Y+ ++ + + RL + S+
Sbjct: 328 NVNALKDRAEAYLIEEMYDEAIQDYE--TAQEHNENDQQIREGLEKAQRLLKQSQK---R 382
Query: 571 DEMMDLKIPLTNQVYSSVISAYSKQGLI 598
D L + + +I AY K L
Sbjct: 383 DYYKILGVKRNAK-KQEIIKAYRKLALQ 409
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 41/390 (10%), Positives = 104/390 (26%), Gaps = 57/390 (14%)
Query: 233 YNNLINACGSTGNWREALKVCKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELM 291
+ L + G +AL + PD + + + + AL
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLT-- 84
Query: 292 KGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVN 350
K ++ D T + L+K G+ D+A D F ++
Sbjct: 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAED-----------------DFKKVLKSNPSE 127
Query: 351 GQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNE-IKKNGLCPDIVS 409
+ + + + + G A++ ++ ++ ++
Sbjct: 128 NEEKEAQSQLIKSDE------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL-- 179
Query: 410 YTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVS-YSALIDAYGSNGLLAEAVEVFREM 468
+ + +P KA + LK + + + Y G ++ RE
Sbjct: 180 RELRAECFIKEGEPRKAISDLK--AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237
Query: 469 EQDGIEPNIVSICTLLAACGRCGRKVNIDAVL----------------LAAEMRDIKLNT 512
+ ++ + + + + L + E +
Sbjct: 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV 295
Query: 513 VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV-TYTVLISSCCRLSRYSEALGFLD 571
+ + + +AI + + ++ PD+V + Y EA+ +
Sbjct: 296 RSKERICHCFSKDEKPVEAIRVCS--EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353
Query: 572 EMMDLKIPLTNQVYSSVISAYSKQGLIAEA 601
+ Q+ + A +
Sbjct: 354 TAQEHN-ENDQQIREGLEKAQRLLKQSQKR 382
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 29/259 (11%), Positives = 70/259 (27%), Gaps = 23/259 (8%)
Query: 233 YNNLINACGSTGNWREALKVCKK----MTENGVGPDLV-THNIVLSAYKNGAQYSKALSY 287
+ EA+ ++ + + H V AY + Q ++ +
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163
Query: 288 FE------LMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHS---MREKRSECLPDIV 338
+ ++ YDKA+ + + +
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223
Query: 339 TFTSIIHLYSVNGQIENCKGVFN---TMLAEGLKPNIV-SYNALMAAYASHGMSKEALSV 394
+ +I + Y +G + F + E + + L G +++A
Sbjct: 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQF 283
Query: 395 FNE----IKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV-SYSALI 449
E I + L Y + K ++ + NL + +
Sbjct: 284 IEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343
Query: 450 DAYGSNGLLAEAVEVFREM 468
+ S+ +A +R++
Sbjct: 344 AVFESSCHFEQAAAFYRKV 362
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 34/223 (15%)
Query: 139 AINHSNQVFNWMKNQKNYCARN-DIYNMMIRLHARHNQIDKARGLFFE----MQKWRCKP 193
++ H Q + +N Y R ++ + DKA +
Sbjct: 160 SMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR 219
Query: 194 D-AETYNALISAHGRAGQWRWAMN-------IFDDMLRAAVAPSRSTYNNLINACGSTGN 245
A + + +++ R+G + A+ + + + + L G
Sbjct: 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP---KVLFGLSWTLCKAGQ 276
Query: 246 WREALKVCKK---MTENGVGPDLVTH-NIVLSAYKNGA---QYSKALSYFELMKGTNIRP 298
++A + ++ + + YK + LSYFE N+
Sbjct: 277 TQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE---KKNLHA 333
Query: 299 DT--TTHNIVIYCLVKLGQYDKAIDLFH---SMREK--RSECL 334
+ +++A + +E + ECL
Sbjct: 334 YIEACARSAAAVFE-SSCHFEQAAAFYRKVLKAQEDILKGECL 375
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 6e-05
Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 16/202 (7%)
Query: 194 DAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSR-STYNNLINACGSTGNWREALKV 252
A++ N L + G A+ ++ L V P + ++NL + G +EAL
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 253 CKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIVIYCL 310
K+ + P ++ + + K AL + + I P H+ +
Sbjct: 66 YKEAIR--ISPTFADAYSNMGNTLKEMQDVQGALQCYT--RAIQINPAFADAHSNLASIH 121
Query: 311 VKLGQYDKAIDLFHSMREKRSECLPDIV-TFTSIIHLYSVNGQIENCKGVFNTMLAEGLK 369
G +AI + + PD + ++ H + + +++ +
Sbjct: 122 KDSGNIPEAIASY----RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS--IV 175
Query: 370 PNIVSYNALMAAYASHGMSKEA 391
+ + N L + + H M
Sbjct: 176 ADQLEKNRLPSVHPHHSMLYPL 197
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 14/151 (9%), Positives = 38/151 (25%), Gaps = 28/151 (18%)
Query: 195 AETYNALISAHGRAGQWRWAMNIFDDML--------RAAVAPSRSTYNNLINACGSTGNW 246
+ L + ++ A F + A + + GNW
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEH---RALHQVGMVERMAGNW 82
Query: 247 REA-------LKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFE----LMKGTN 295
A ++ + E+ + + + A G + A +E + +
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQAD 141
Query: 296 IRPD--TTTHNI-VIYCLVKLGQYDKAIDLF 323
+ + + + +A +
Sbjct: 142 DQVAIACAFRGLGDLAQ--QEKNLLEAQQHW 170
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 25/226 (11%), Positives = 61/226 (26%), Gaps = 36/226 (15%)
Query: 232 TYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELM 291
++A G +A+ ++ ++ + +
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQ------------------TIALNIDRTEMYYWTNVD 47
Query: 292 KGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNG 351
K + I + K YDKA + + +K ++ + + G
Sbjct: 48 KNSEISSKL--ATELALAYKKNRNYDKAYLFYKELLQKAPN---NVDCLEACAEMQVCRG 102
Query: 352 QIENCKGVFNTMLAEGLKP-NIVSYNALMAAYASHG-MSKEALSVFN---EIKKNGLCPD 406
Q ++ ++ +L L+ N+ + L Y K+ L
Sbjct: 103 QEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK----M 156
Query: 407 IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAY 452
+ + + + KAR ++ P+ + L
Sbjct: 157 QYARYRDGLSKLFTTRYEKARNSLQ--KVILRFPSTEAQKTLDKIL 200
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 26/231 (11%), Positives = 58/231 (25%), Gaps = 67/231 (29%)
Query: 310 LVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLK 369
++ GQ +A+ F + D + + T + + +
Sbjct: 14 AIEAGQNGQAVSYF----RQTIALNID------------------RTEMYYWTNVDKNSE 51
Query: 370 PNIVSYNALMAAYASHGMSKEALSVFNE-IKKNGLCPD-IVSYTSLLNAYGRSQQPVKAR 427
+ L AY + +A + E ++K P+ + + Q A
Sbjct: 52 ISSKLATELALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRGQEKDAL 108
Query: 428 EVFNMMRINNLKPNLVS-YSALIDAYGSNG-LLAEAVEVFREMEQDGIEPNIVSICTLLA 485
++ +I L+ + ++ L + Y + +E +
Sbjct: 109 RMYE--KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTK--------- 155
Query: 486 ACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYK 536
A S + YEKA +
Sbjct: 156 -------------------------MQYARYRDGLSKLFTTRYEKARNSLQ 181
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 40/257 (15%), Positives = 81/257 (31%), Gaps = 32/257 (12%)
Query: 195 AETYNALISAHGRAGQWRWAMNIFDDMLRA-AVAPSRSTYNNLINACGSTGNWREALKVC 253
A+ A + +A Q+ A+ ++ +A + + NN A G + A+
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYN---KAWELHKDITYLNNRAAAEYEKGEYETAISTL 61
Query: 254 KKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVK 312
E G ++ + ++ ++ L + K + T + L K
Sbjct: 62 NDAVE--QGREMRADYKVISKSFARIGNAYHKLGDLK--KTIEYYQKSLTEHRTADILTK 117
Query: 313 LGQYDKAIDLFHSMREKRSECLPDIVTFTSIIH-----LYSVNGQIENCKGVFNTMLAEG 367
L +K + E + P+ + Y N + M+
Sbjct: 118 LRNAEKELKKA----EAEAYVNPEK----AEEARLEGKEYFTKSDWPNAVKAYTEMIK-- 167
Query: 368 LKPN-IVSYNALMAAYASHGMSKEALSVFNE-IKKNGLCPD-IVSYTSLLNAYGRSQQPV 424
P Y+ AA A EA++ N+ I+K+ P+ + +Y A ++
Sbjct: 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEYA 224
Query: 425 KAREVFNMMRINNLKPN 441
A E +
Sbjct: 225 SALETLD--AARTKDAE 239
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 58/387 (14%), Positives = 98/387 (25%), Gaps = 102/387 (26%)
Query: 194 DAETYNALISAHGRAGQWRWAMNIFDDMLRAAVA--PSRS-TYNNLINACGSTGNWREAL 250
D E + L AGQ A++ F AAV P Y + G + AL
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFH----AAVDGDPDNYIAYYRRATVFLAMGKSKAAL 57
Query: 251 KVCKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRPD---------- 299
K+ + D + +A F+ K P
Sbjct: 58 PDLTKVIA--LKMDFTAARLQRGHLLLKQGKLDEAEDDFK--KVLKSNPSEQEEKEAESQ 113
Query: 300 ------TTTHNIVIYCLVKLGQYDKAIDLF----------HSMREKRSECLPDIVTFTSI 343
Y AI +RE R+EC
Sbjct: 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE------ 167
Query: 344 IHLYSVNGQIENCKGVFNTMLAEGLKP-NIVSYNALMAAYASHGMSKEALSVFNE-IKKN 401
G+ LK N ++ + Y G + +LS E +K
Sbjct: 168 -------GEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK-- 216
Query: 402 GLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEA 461
L D + Y + ++ K E +G +A
Sbjct: 217 -LDQD---HKRCFAHYKQVKKLNKLIESAE-------------------ELIRDGRYTDA 253
Query: 462 VEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRD---------IKLN- 511
+ + + EP++ T+ + C E +++
Sbjct: 254 TSKYESVMK--TEPSVAEY-TVRSKERIC-------HCFSKDEKPVEAIRICSEVLQMEP 303
Query: 512 --TVAYNSAIGSYMNVGEYEKAIALYK 536
A +Y+ Y++AI Y+
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYE 330
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 53/389 (13%), Positives = 107/389 (27%), Gaps = 79/389 (20%)
Query: 233 YNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKN-GA------QYSKAL 285
+ L + G +AL + PD AY + AL
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVD--GDPDNY------IAYYRRATVFLAMGKSKAAL 57
Query: 286 SYFELMKGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSII 344
K ++ D T + L+K G+ D+A D F +K + P
Sbjct: 58 PDLT--KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF----KKVLKSNPSEQE----- 106
Query: 345 HLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNE-IKKNGL 403
Q+ + + A++ ++ ++
Sbjct: 107 -EKEAESQLVKADEM-------------QRLRSQALDAFDGADYTAAITFLDKILEVCVW 152
Query: 404 CPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV-SYSALIDAYGSNGLLAEAV 462
++ + + +P KA + LK + ++ + Y G ++
Sbjct: 153 DAEL--RELRAECFIKEGEPRKAISDLK--AASKLKSDNTEAFYKISTLYYQLGDHELSL 208
Query: 463 EVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSY 522
RE + ++ + + + +K SA
Sbjct: 209 SEVRECLK--LDQD------------------HKRCFAH---YKQVKKLNKLIESAE-EL 244
Query: 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYTVLI-----SSCCRLSRYSEALGFLDEMMDLK 577
+ G Y A + Y+ K P YTV + + EA+ E++ ++
Sbjct: 245 IRDGRYTDATSKYE--SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302
Query: 578 IPLTNQVYSSVISAYSKQGLIAEAESMFN 606
P AY + + EA +
Sbjct: 303 -PDNVNALKDRAEAYLIEEMYDEAIQDYE 330
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 6e-04
Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 6/124 (4%)
Query: 515 YNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCC-RLSRYSEALGFLDEM 573
Y+ A + G YE A +++ + + + + +C + +Y A+
Sbjct: 25 YSLAF-NQYQSGXYEDAHXVFQ--ALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81
Query: 574 MDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNM-MKMSGCSPDVITYTAMLHAYNTAED 632
+ + + G +AEAES + ++ P+ + + + A
Sbjct: 82 AVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140
Query: 633 WEKA 636
+K
Sbjct: 141 LKKE 144
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 20/138 (14%), Positives = 38/138 (27%), Gaps = 11/138 (7%)
Query: 192 KPD-AETYNALISAHGRAGQWRWAMNIFDDMLRA-AVAPSRS-TYNNLINA-CGSTGNWR 247
P + + A F +A ++ P + NN CG
Sbjct: 38 DPKNELAWLVRAEIYQYLKVNDKAQESFR---QALSIKPDSAEINNNYGWFLCGRLNRPA 94
Query: 248 EALKVCKKMTENGVGPDL-VTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHNI 305
E++ K + P + + Q+ A +Y + + +P
Sbjct: 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK--RSLAAQPQFPPAFKE 152
Query: 306 VIYCLVKLGQYDKAIDLF 323
+ + GQ A F
Sbjct: 153 LARTKMLAGQLGDADYYF 170
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 846 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.52 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.51 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.49 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.47 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.45 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.42 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.42 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.35 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.29 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.28 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.27 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.26 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.26 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.24 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.23 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.22 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.21 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.21 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.16 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.13 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.11 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.11 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.1 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.07 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.06 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.05 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.05 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.02 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.99 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.98 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.97 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.97 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.97 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.94 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.93 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.92 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.91 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.91 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.9 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.89 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.88 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.88 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.87 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.85 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.85 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.84 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.82 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.81 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.8 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.79 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.77 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.76 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.76 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.75 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.75 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.74 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.73 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.71 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.65 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.65 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.61 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.61 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.57 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.56 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.56 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.55 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.53 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.53 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.52 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.52 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.5 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.45 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.45 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.44 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.42 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.41 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.38 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.36 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.33 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.33 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.29 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.28 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.15 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.14 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.07 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.05 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.0 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.95 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.93 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.93 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.89 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.82 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.78 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.57 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.46 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.44 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.39 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.31 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.24 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.19 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.1 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.99 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.92 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.83 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.4 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.88 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.61 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.57 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.46 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.43 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.11 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.07 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.9 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.84 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.76 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.45 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.39 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.36 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.74 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.19 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.19 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.9 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.99 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.61 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.19 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.07 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.94 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.52 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.29 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.17 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.09 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.5 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.84 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.76 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.15 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.76 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 81.54 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.33 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.27 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 80.03 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=385.76 Aligned_cols=526 Identities=11% Similarity=0.002 Sum_probs=253.5
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003122 134 ITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRW 213 (846)
Q Consensus 134 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 213 (846)
..+.|....+...|..+. .++...|+.++..|.+.|++++|..+|++|.. ..|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHH
Confidence 334455555555554332 23556677777777777777777777777764 34666777777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003122 214 AMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKG 293 (846)
Q Consensus 214 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 293 (846)
|+.+|+.+... +++..+++.++.+|.+.|++++|+++|+++. |+.. ...++.+.+ -..
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~-----------~~~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLL-----------MQD 193 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC-------------------------CCC
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccc-----------ccc
Confidence 77777766542 4567777777777777777777777776421 1110 000010000 012
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003122 294 TNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV 373 (846)
Q Consensus 294 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 373 (846)
.+...+..+|+.++.+|.+.|++++|+++|+++.+..+. +...+..++..+...+..+.+...
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~-------------- 256 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK---CYEAFDQLVSNHLLTADEEWDLVL-------------- 256 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCSCHHHHHHHHH--------------
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch---hhHHHHHHHHhhcccchhHHHHHH--------------
Confidence 234445667777777777777777777777777665443 445555555443332221111110
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 003122 374 SYNALMAAYASHGMSKEALSV-FNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAY 452 (846)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 452 (846)
.+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 257 -------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 257 -------------------KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp -------------------HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred -------------------hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 00 122222222223333444455555555555555555555433 34555555556666
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 003122 453 GSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAI 532 (846)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 532 (846)
.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|..++..+.... +.+..+|+.++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 66666666666666555432 1122222222222222222222222222222111 223444444444455555555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003122 533 ALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSG 612 (846)
Q Consensus 533 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (846)
++|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555444421 2234444444444444444444444444444432 2344444444444444444444444444444431
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 003122 613 CSPDVITYTAMLHAYNTAEDWEKACALFLEMETN----NIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDS 688 (846)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 688 (846)
+.+..+|+.++.+|.+.|++++|+++|+++.+. +..|+. ...
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~---------------------------------~~~ 517 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP---------------------------------WAA 517 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG---------------------------------GHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh---------------------------------HHH
Confidence 223444444444444444444444444444432 223330 033
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNL 767 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 767 (846)
++..++.+|...|++++|++.++++....|. +..+|..++.+|.+.|++++|.+.|+++++ +.| +...|..++.+|
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 4444444444444444444444444444443 445566666666666666777777777666 666 344566555554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=378.41 Aligned_cols=521 Identities=10% Similarity=-0.011 Sum_probs=350.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHH
Q 003122 205 HGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKA 284 (846)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 284 (846)
+.+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 344555555555555432 346677777777777777777777777777643 35667777777777777777777
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 285 LSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTML 364 (846)
Q Consensus 285 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (846)
..+|+.+... +++..+++.++.+|.+.|++++|+++|+++.. . +.. ...+.+.+. .
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~---~~~-----~~~~~~~~~-----------~ 192 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP---F---RKD-----EKNANKLLM-----------Q 192 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT---T---C---------------C-----------C
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC---c---ccc-----ccccccccc-----------c
Confidence 7777776532 45667777777777777777777777764321 1 000 000000000 1
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHH--H-HHHHHHCCCCcC
Q 003122 365 AEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKARE--V-FNMMRINNLKPN 441 (846)
Q Consensus 365 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~--~-~~~m~~~~~~~~ 441 (846)
..+.+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+..+...+...+..+.+.. + +..+...+....
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 123344556666666666666666666666666665421 133344444443333222211111 0 222222222222
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003122 442 LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGS 521 (846)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 521 (846)
..+|+.++..| .+.|++++|..+|+.+... +++..+|+.++.+
T Consensus 272 ~~~~~~~~~~~-----------------------------------~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 272 RSLYMLKLNKT-----------------------------------SHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHTTSCTT-----------------------------------TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------------------------------cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 33334444444 4444444555444444433 3577778888888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 522 YMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 601 (846)
|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 888888888888888887654 3366678888888888888888888888888653 56778888888888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ 681 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (846)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|+++|+++.+.
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998888753 3457888899999999999999999999988752 346778888999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC------CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 682 DITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS------FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 682 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
.+. +..++..++.+|.+.|++++|+++++++... .|.....+|..++.+|.+.|++++|.+.|+++++ ..|
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p 547 (597)
T 2xpi_A 471 FQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LST 547 (597)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSS
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCC
Confidence 655 7788889999999999999999999888655 3432277999999999999999999999999999 778
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHH
Q 003122 756 -NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFA 802 (846)
Q Consensus 756 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 802 (846)
+..+|..++.+|.+.|++++|.+.++++.+ +.|+ +..+..+...+
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 677999999999999999999999999998 4565 44555555443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=258.42 Aligned_cols=377 Identities=13% Similarity=0.048 Sum_probs=185.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHH
Q 003122 382 YASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEA 461 (846)
Q Consensus 382 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 461 (846)
+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++...... +.+..+|..++..+...|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 344455555555554444321 1123334444444455555555555554444332 33444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003122 462 VEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR 541 (846)
Q Consensus 462 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 541 (846)
++.|+++.+.. +.+..++..+..++.+.|++++|...+..+...+ +.+...+..+...+...|++++|...|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555554431 1122233333333333333333333333333321 113334444555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003122 542 KVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYT 621 (846)
Q Consensus 542 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 621 (846)
. +.+..+|..+...+...|++++|...++++++.+ |.+...+..++..+...|++++|...|+++.... +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 2 2234455555555555555555555555555543 3344555555555555555555555555555432 12345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL 700 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 700 (846)
.++.+|...|++++|+..|+++++. .| +..+|..++.++.+.|++++|+..|+++++..+. +...+..++.++...
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHc
Confidence 5555555555555555555555552 23 2445555555555555555555555555554332 444555555555555
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcC
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAG 771 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 771 (846)
|++++|+..++++....|. +..++..++.+|.+.|++++|.+.|+++++ +.|+ ..+|..++..|.+.|
T Consensus 319 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 5555555555555544444 344555555555555555555555555555 5552 335555555544443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-28 Score=259.12 Aligned_cols=380 Identities=13% Similarity=0.042 Sum_probs=332.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 413 LLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 413 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 492 (846)
+...+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4567788999999999999988764 5566778888889999999999999999998864 5678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 493 KVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
+++|...|+.+.... +.+..+|..++.++.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998764 4467789999999999999999999999998864 33455677888889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-D 651 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~ 651 (846)
+++.. |.+..+|..++.++...|++++|...|+++++.+ +.+...|..++..+...|++++|+..|+++.+ +.| +
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 99864 5678899999999999999999999999999864 33488999999999999999999999999998 455 4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
..++..++.+|.+.|++++|+..|+++++.++. +...+..++.++...|++++|+..++++....|. +..+|..++.+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHH
Confidence 788999999999999999999999999997765 6788999999999999999999999999888887 77899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRG 806 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~ 806 (846)
+...|++++|.+.++++++ ..|+ ..+|..++.+|.+.|++++|+..++++.+ +.|+ ...+..++..+...+
T Consensus 315 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999 8885 66999999999999999999999999987 5564 446666666554433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=260.61 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHcCCCCCHHH
Q 003122 162 IYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ---------WRWAMNIFDDMLRAAVAPSRST 232 (846)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~g~~~~~~~ 232 (846)
+++.+|+.|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. ++.|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4556666666666666666666666666666666666666666655443 3455555555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 003122 233 YNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVK 312 (846)
Q Consensus 233 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 312 (846)
|++||.+|++.|++++|.++|++|.+.|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 003122 313 LGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSV 349 (846)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 349 (846)
.|+.++|.++|++|.+.+.. |+..||+.++..++.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~--ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQ--VSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSS--BCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHHhc
Confidence 55555555555555544333 555555555554443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=259.34 Aligned_cols=204 Identities=14% Similarity=0.207 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCC---------HHH
Q 003122 214 AMNIFDDMLRAAVAPSR-STYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQ---------YSK 283 (846)
Q Consensus 214 A~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---------~~~ 283 (846)
+..+.+.+.+.+....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||.||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444445544444332 34566666666666666666666666666666666666666666655443 455
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 284 ALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTM 363 (846)
Q Consensus 284 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (846)
|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.+.. ||..+|+.+|.+|++.|++++|.++|++|
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~--Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ--PRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 5556666665555555555555555555555555555555555544332 55555555555555555555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 003122 364 LAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGR 419 (846)
Q Consensus 364 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 419 (846)
.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.|+..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-25 Score=248.85 Aligned_cols=455 Identities=11% Similarity=0.001 Sum_probs=304.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003122 300 TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALM 379 (846)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 379 (846)
...+......+.+.|++++|+..|+++.... |+..+|..++.++.+.|++++|...++++++.+ +.+..+|..+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 4456666777777777777777777777654 466677777777777777777777777777653 33455677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHH
Q 003122 380 AAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLA 459 (846)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (846)
.+|...|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+.....
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------- 150 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE--------- 150 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH---------
Confidence 777777777777777777766542 2334444444444433333333333333332222222211111000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 003122 460 EAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMN---VGEYEKAIALYK 536 (846)
Q Consensus 460 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 536 (846)
. .......|+.......+..+....... ....+.+...+......+.. .|++++|+..|+
T Consensus 151 ----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 151 ----R---KDKQENLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred ----H---HhhccCCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 0 000011233222221111111000000 00002234455555555554 788999999998
Q ss_pred HHhh-----CCCCC--------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 537 CMKK-----RKVMP--------DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAES 603 (846)
Q Consensus 537 ~~~~-----~~~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 603 (846)
++.+ ....| +..++..+...+...|++++|...++++++.. |+..++..++.++...|++++|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHH
Confidence 8877 31112 24567778888889999999999999998864 338888889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003122 604 MFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDI 683 (846)
Q Consensus 604 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (846)
.++++.... +.+...+..++..|...|++++|+..|+++.+.. +.+..++..++..|...|++++|+..++++++..+
T Consensus 292 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 292 YFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp HHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 999988753 3457788899999999999999999999998842 33467888888899999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc-----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCc
Q 003122 684 TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS-----IGLLNQLLHLLGK---SGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 684 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p 755 (846)
. +...+..++.++...|++++|+..++++....|... ..+|..++.++.. .|++++|...++++++ ..|
T Consensus 370 ~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~ 446 (514)
T 2gw1_A 370 E-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDP 446 (514)
T ss_dssp T-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCT
T ss_pred c-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCc
Confidence 4 667888899999999999999999998866555421 3378899999999 9999999999999999 778
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 003122 756 -NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMF 795 (846)
Q Consensus 756 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 795 (846)
+..++..++.+|.+.|++++|...++++.+ +.|+....
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~ 485 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEK 485 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHH
Confidence 466888999999999999999999999988 45665543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-24 Score=244.68 Aligned_cols=450 Identities=10% Similarity=0.046 Sum_probs=294.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 003122 268 HNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLY 347 (846)
Q Consensus 268 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~ 347 (846)
+..+...+.+.|++++|+..|+++...+ |+..++..++.++.+.|++++|+..++++.+..+. +..++..++.++
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HHHHHHHHHHHH
Confidence 3444455555555555555555555543 45555666666666666666666666666555443 455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 003122 348 SVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAR 427 (846)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 427 (846)
.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+......-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 66666666666666665553 22222233333333332222233333322222211111111111000000011111111
Q ss_pred HHHHHHHHCC---------CCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhc
Q 003122 428 EVFNMMRINN---------LKPNLVSYSALIDAYGS---NGLLAEAVEVFREMEQ-----DGIEPNIVSICTLLAACGRC 490 (846)
Q Consensus 428 ~~~~~m~~~~---------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~g~~~~~~~~~~ll~~~~~~ 490 (846)
.+...+.... -+.+...+......+.. .|++++|+.+|+++.+ ....|+....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---------- 232 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL---------- 232 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH----------
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc----------
Confidence 1111111000 01224444444444444 7788888888887776 3112221100
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 003122 491 GRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFL 570 (846)
Q Consensus 491 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 570 (846)
.+.+..++..++..+...|++++|+..|+++.+.. |+...+..++..+...|++++|...+
T Consensus 233 -----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 233 -----------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred -----------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 02245677888889999999999999999998874 44778888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 571 DEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP 650 (846)
Q Consensus 571 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 650 (846)
+++++.. +.+..++..++.+|...|++++|...|+++.... +.+...+..++..|...|++++|+..++++.+. .+.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-ccc
Confidence 9999864 5677889999999999999999999999999863 335788999999999999999999999999884 233
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHh---cCCHHHHHHHHHhhccCCCccch
Q 003122 651 DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS-----DSIFFEMVLACSL---LRDWKTTIDLIKQMEPSFHVVSI 722 (846)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 722 (846)
+..++..++.+|...|++++|+..++++++..+... ...+..++.++.. .|++++|+..++++....|. +.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 449 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SE 449 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cH
Confidence 567888999999999999999999999987544311 3388899999999 99999999999999888777 67
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
.++..++.+|...|++++|...|+++++ +.|+..
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 8899999999999999999999999999 889655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-23 Score=227.46 Aligned_cols=382 Identities=12% Similarity=0.022 Sum_probs=216.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 003122 371 NIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALID 450 (846)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 450 (846)
+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..+|...|++++|...|+++.+.+ +.+...+..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34456666666666666666666666666532 2345666666666777777777777776666553 345666777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 003122 451 AYGSNGLLAEAVEVFREMEQDGIEPNI----VSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVG 526 (846)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 526 (846)
.|...|++++|.+.|+++.+. .|+. ..+..+...+. ...+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-----------------------MQRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcC
Confidence 777777777777777777764 2332 23333322211 111233344556666
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (846)
++++|+..|+++.+.. +.+...+..++.+|...|++++|...++++.+.. +.+..++..++.+|...|++++|+..|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777776666666542 3345556666666666666666666666665542 3455556666666666666666666666
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003122 607 MMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF 685 (846)
Q Consensus 607 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (846)
++... .|+ ...+..+... .. ...+..++.+|.+.|++++|+..|+++++..+.
T Consensus 236 ~~~~~--~p~~~~~~~~~~~~--------------~~---------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~- 289 (450)
T 2y4t_A 236 ECLKL--DQDHKRCFAHYKQV--------------KK---------LNKLIESAEELIRDGRYTDATSKYESVMKTEPS- 289 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHH--------------HH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-
T ss_pred HHHHh--CCChHHHHHHHHHH--------------HH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 66553 222 3333222000 00 001122355566666666666666666654332
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHH
Q 003122 686 S----DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTY 760 (846)
Q Consensus 686 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~ 760 (846)
+ ...+..++.++...|++++|+..++++....|. +..+|..++.+|...|++++|...|+++++ +.|+ ..++
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 366 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIR 366 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHH
Confidence 2 235556666666666666666666666555554 456666777777777777777777777776 6663 4455
Q ss_pred HHHH------------HHHHhcC-----CHHHHHHHHHH-HHHCCCCCC----HH-------hHHHHHHHHHhcCCcchH
Q 003122 761 SILL------------KNLLAAG-----NWRKYIEVLQW-MEDAGIQPS----YG-------MFRDIVSFAQTRGGAEYA 811 (846)
Q Consensus 761 ~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~g~~p~----~~-------~~~~l~~~~~~~~~~~~a 811 (846)
..++ ..|...| ..+++.+.|++ ..+ ..|| +. .+..+...+...++.+..
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5555 2344455 45566666665 333 2232 11 456666777666665554
Q ss_pred H
Q 003122 812 A 812 (846)
Q Consensus 812 ~ 812 (846)
.
T Consensus 445 ~ 445 (450)
T 2y4t_A 445 K 445 (450)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-24 Score=239.28 Aligned_cols=440 Identities=13% Similarity=0.048 Sum_probs=288.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 301 TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMA 380 (846)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 380 (846)
..+..+...+.+.|++++|+..|+++....+. +..++..+..+|.+.|++++|+..|+++++.+ +.+..++..+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 44556666667777777777777777666554 56667777777777777777777777776653 334556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHh
Q 003122 381 AYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN------NLKPNLVSYSALIDAYGS 454 (846)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~li~~~~~ 454 (846)
++...|++++|...|+.+.. .|+. ....+..+...+...+|...++.+... ...|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 77777777777777753221 1221 112233344444455666666665432 112222 22333444
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 455 NGLLAEAVEVFREMEQDGIEPNIVSICT-LLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIA 533 (846)
Q Consensus 455 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 533 (846)
..+.+.+...+...... .+....+.. +...+.. . ........|++++|+.
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~---------------------~------~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSA---------------------T------DEGYLVANDLLTKSTD 223 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTC---------------------S------HHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHh---------------------h------hhhhHHHHHHHHHHHH
Confidence 55555544443332221 111111111 1111100 0 0011122356788888
Q ss_pred HHHHHhhCCCCCC--------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 534 LYKCMKKRKVMPD--------SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMF 605 (846)
Q Consensus 534 ~~~~~~~~~~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 605 (846)
+|+++.+.. |+ ..++..+...+...|++++|...++++++.. |+..++..++..+...|++++|...|
T Consensus 224 ~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 224 MYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 888887763 33 2246666677788888999999999888753 45778888888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003122 606 NMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF 685 (846)
Q Consensus 606 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (846)
+++.... +.+..+|..++..+...|++++|+..|+++.+.. +.+..++..++.+|...|++++|+..++++++..+.
T Consensus 300 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 376 (537)
T 3fp2_A 300 QKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT- 376 (537)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 9888753 3457888888889999999999999999988742 224667888888899999999999999999887655
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-----chhhHHHHHHHHHhc----------CCHHHHHHHHHHHHh
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-----SIGLLNQLLHLLGKS----------GRIESMMKLFFKIVS 750 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 750 (846)
+...+..++.++...|++++|+..++++....|.. ....+..++.++... |++++|...|+++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 66788888899999999999999988875443321 223355667788888 999999999999999
Q ss_pred cCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 751 SGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 751 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
..| +..+|..++.+|.+.|++++|+..++++.+ +.|+..
T Consensus 457 --~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~ 496 (537)
T 3fp2_A 457 --LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMD 496 (537)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--CH
T ss_pred --hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcH
Confidence 788 466899999999999999999999999988 445444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-23 Score=226.18 Aligned_cols=325 Identities=12% Similarity=0.023 Sum_probs=203.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003122 441 NLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIG 520 (846)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 520 (846)
+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+.++|...+..+...+ +.+..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34445555555555555555555555555431 2234444444444444444444444444444332 224556666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 521 SYMNVGEYEKAIALYKCMKKRKVMPDS----VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
.|.+.|++++|+..|+++.+. .|+. ..+..++..+.. ..+..++..+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 666777777777777766654 2332 333333332110 01122233455566
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE 676 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (846)
++++|+..|+++.... +.+...+..++.+|...|++++|+..|+++.+. .+.+..++..++.+|...|++++|+..|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665542 234555666666666666666666666666552 12335566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHH
Q 003122 677 FMREQDITFSDSIFF------------EMVLACSLLRDWKTTIDLIKQMEPSFHVVS---IGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 677 ~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 741 (846)
++++..+. +...+. .++.++...|++++|+..++++....|... ..+|..++.++.+.|++++|
T Consensus 236 ~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 236 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 66654433 333333 338899999999999999999987777622 34788999999999999999
Q ss_pred HHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHH
Q 003122 742 MKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIV 799 (846)
Q Consensus 742 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 799 (846)
+..++++++ ..| +..+|..++.+|...|++++|+..++++.+ +.|+ +..+..+.
T Consensus 315 ~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 315 IRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 999999999 788 567999999999999999999999999987 5665 44555554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-22 Score=229.86 Aligned_cols=445 Identities=12% Similarity=0.100 Sum_probs=313.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 003122 266 VTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIH 345 (846)
Q Consensus 266 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~ 345 (846)
..+..+...+.+.|++++|+..|+++.... +.+..++..++.++.+.|++++|++.|+++.+..+. +..++..+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHH
Confidence 445556666777777777777777776654 346677777888888888888888888888776655 6777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCh
Q 003122 346 LYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNG--LCPDIVSYTSLLNAYGRSQQP 423 (846)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~ 423 (846)
++...|++++|...|+ .... .|+. ....+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 8888888888888885 3322 2222 1222344555566677888888775531 001111123344445556666
Q ss_pred HHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 424 VKAREVFNMMRINNLKPNLV-SYSALIDAYGS--------NGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKV 494 (846)
Q Consensus 424 ~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~--------~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 494 (846)
+.+...+...... .+... ....+...+.. .|++++|+.+++++.+.. +.+...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHH-----------
Confidence 6655544333221 22221 22223322222 246778888888877642 2222222211
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003122 495 NIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMM 574 (846)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 574 (846)
..++..+...+...|++++|+..|+++.+. .|+...+..+...+...|++++|...+++++
T Consensus 243 -----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 243 -----------------ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 223556667788899999999999999886 4667788889999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003122 575 DLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIA 654 (846)
Q Consensus 575 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 654 (846)
+.. +.+..++..++..+...|++++|+..|+++.... +.+...|..++.+|...|++++|+..++++.+.. +.+..+
T Consensus 304 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 304 DLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred ccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 864 5678899999999999999999999999999863 3347889999999999999999999999999842 334678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHhhccCCCc
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDIT-----FSDSIFFEMVLACSLL----------RDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 719 (846)
+..++.++...|++++|+..|+++++..+. .....+...+.++... |++++|+..++++....|.
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 889999999999999999999999874322 1223355667778888 9999999999999888887
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 720 VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 720 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
+..++..++.+|...|++++|.+.|+++++ +.|+..
T Consensus 461 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~ 496 (537)
T 3fp2_A 461 -SEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMD 496 (537)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--CH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcH
Confidence 678999999999999999999999999999 888544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-18 Score=197.73 Aligned_cols=340 Identities=13% Similarity=0.116 Sum_probs=210.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 413 LLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 413 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 492 (846)
+...+...|.+++|..+|++.. -.....+.++. ..|++++|.++.++. .+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 4455555666666666666542 11111222221 445566666665533 234556666666666666
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 493 KVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
+++|...|... .+...|..++.++.+.|++++|++.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 66666666443 255566666666666666666666666655542 22222334666666666665433222
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS 652 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 652 (846)
+ .++...+..+++.|...|++++|..+|..+ ..|..++.+|.+.|++++|++.+++.. +.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 1 234445555666666666666666666653 256666666666666666666666652 34
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
.+|..+..+|...|++..|...... +..++..+..++..|...|.+++|+.+++.....++. .++.|..|+.+|
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftELaiLy 1324 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHHHHHH
Confidence 5666666666666666666654443 2225667778888999999999999999998877755 788888888888
Q ss_pred Hhc--CCHHHHHHHHHHHHhcCCCc------CHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHCCCCCC
Q 003122 733 GKS--GRIESMMKLFFKIVSSGAEA------NFNTYSILLKNLLAAGNWRKYIEV-------------LQWMEDAGIQPS 791 (846)
Q Consensus 733 ~~~--g~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~g~~p~ 791 (846)
.+. +++.++.++|..-+. +.| +...|..+.-.|.+.|+|++|+.. |+..+. -..+
T Consensus 1325 aKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n 1400 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 1400 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cccc
Confidence 776 488888888887766 555 344788888899999999999832 222211 1235
Q ss_pred HHhHHHHHHHHHhcC
Q 003122 792 YGMFRDIVSFAQTRG 806 (846)
Q Consensus 792 ~~~~~~l~~~~~~~~ 806 (846)
+..+...+.|+.+..
T Consensus 1401 ~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhhC
Confidence 667777777777655
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-17 Score=192.57 Aligned_cols=381 Identities=12% Similarity=0.114 Sum_probs=196.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003122 304 NIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYA 383 (846)
Q Consensus 304 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 383 (846)
...+.+|...|.+.+|+++++++......+..+...-+.++.+..+. +..+..++.++.-.. + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 34455555666666666666666533222223344444455444444 334444444433211 1 222445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHH
Q 003122 384 SHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVE 463 (846)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 463 (846)
..|.+++|..+|++... .....+.++ ...+++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 56666666666665421 111112221 14555666666655431 34556666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 003122 464 VFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKV 543 (846)
Q Consensus 464 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 543 (846)
.|.+. .|...|..++..|.+.|++++|.+.+....+.. ++....+.++.+|.+.+++++... | ++
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~-f---I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE-F---IN--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH-H---Hh---
Confidence 66442 344555556666666666666666666555443 222222336666666666553222 2 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003122 544 MPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAM 623 (846)
Q Consensus 544 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 623 (846)
.++...|..+...|...|++++|..+|..+ ..|..++.+|++.|++++|.+.+++.. +..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHH
Confidence 234445555666666666666666666653 255666666666666666666666542 44566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL--LR 701 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g 701 (846)
..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++..+..+.. ....|..++.+|.+ .+
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHHHHHHHhCCHH
Confidence 666666666666665544322 23334445666666666666666666666554311 33344444444432 33
Q ss_pred CHHHHHHHHHhhccCCCc----cchhhHHHHHHHHHhcCCHHHHH
Q 003122 702 DWKTTIDLIKQMEPSFHV----VSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
+..+++++|..-....+. .....|..+...|.+.|+++.|.
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 445555555543332220 13445666666666666666665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-20 Score=193.91 Aligned_cols=314 Identities=12% Similarity=0.024 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003122 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYM 523 (846)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 523 (846)
.+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.... +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 33444444444444444444444444432 2223333333333444444444444443333321 224455556666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 524 NVGEYEKAIALYKCMKKRKVMP----DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIA 599 (846)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 599 (846)
..|++++|+..|+++.+. .| +...+..+.... . ...+..++..+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 666666666666666654 23 122222221100 0 001122334455555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003122 600 EAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (846)
+|...++++.+.. +.+...+..++.++...|++++|+..++++.+. .+.+..++..++..+...|++++|...+++++
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555432 223455555555555555555555555555543 12234455555555555555555555555555
Q ss_pred HCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHH
Q 003122 680 EQDITFSDSIFF------------EMVLACSLLRDWKTTIDLIKQMEPSFHVVS---IGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 680 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
+..+. +...+. .++.++...|++++|+..++++....|... ..++..++.++...|++++|...
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 216 KLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 54333 222221 235556666666777666666655554421 12345567777777777777777
Q ss_pred HHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 745 FFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 745 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
++++++ ..| +..+|..++.+|...|++++|+..++++.+ +.|+
T Consensus 295 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~ 338 (359)
T 3ieg_A 295 CSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNEN 338 (359)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTT
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 777777 666 455777777777777777777777777765 3454
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-19 Score=191.57 Aligned_cols=303 Identities=12% Similarity=0.073 Sum_probs=252.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVIS 590 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 590 (846)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+...+..++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777788888888888888888887753 3457778888888888888888888888888764 556778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003122 591 AYSKQGLIAEAESMFNMMKMSGCSP----DVITYTAM------------LHAYNTAEDWEKACALFLEMETNNIEPDSIA 654 (846)
Q Consensus 591 ~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 654 (846)
++...|++++|...|+++.+. .| +...+..+ +..+...|++++|+..++++.+.. +.+..+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 156 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAEL 156 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHH
Confidence 888888899998888888875 35 34455444 578899999999999999999842 345788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH--------
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN-------- 726 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------- 726 (846)
+..++.++...|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..++.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence 999999999999999999999999997765 7889999999999999999999999999887776 444433
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHH
Q 003122 727 ----QLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-----TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFR 796 (846)
Q Consensus 727 ----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 796 (846)
.++..+...|++++|...++++++ ..|+.. .+..++.+|...|++++|+..++++.+. .| ++..+.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 347789999999999999999999 778532 4666889999999999999999999884 45 567888
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 003122 797 DIVSFAQTRGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 797 ~l~~~~~~~~~~~~a~~~~~~l~~l~~~ 824 (846)
.++..+...|+.++|...++++.++.+.
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999998887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-18 Score=190.69 Aligned_cols=350 Identities=13% Similarity=0.014 Sum_probs=211.5
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCH
Q 003122 371 NIVSYNALMAAYAS----HGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGR----SQQPVKAREVFNMMRINNLKPNL 442 (846)
Q Consensus 371 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~ 442 (846)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444445555544 455555555555555432 34445555555555 555555655555555543 44
Q ss_pred HHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccCHHH
Q 003122 443 VSYSALIDAYGS----NGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGR----CGRKVNIDAVLLAAEMRDIKLNTVA 514 (846)
Q Consensus 443 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 514 (846)
..+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|...|......+ +..+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555555555 455666666666555543 33344444444443 445555555555554443 4555
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 003122 515 YNSAIGSYMN----VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR----LSRYSEALGFLDEMMDLKIPLTNQVYS 586 (846)
Q Consensus 515 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 586 (846)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..++++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5666666665 667777777777666653 45555566666654 566777777777766643 445556
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 587 SVISAYSK----QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA-----EDWEKACALFLEMETNNIEPDSIACSA 657 (846)
Q Consensus 587 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~ 657 (846)
.+..+|.. .+++++|+..|++..+.| +...+..|...|... +++++|+..|++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 66666666 677777777777776543 455666666666665 67777777777777643 3455666
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCccchhhHHHHHH
Q 003122 658 LMRAFNKGG---QPSKVLLVAEFMREQDITFSDSIFFEMVLACSL----LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLH 730 (846)
Q Consensus 658 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 730 (846)
+...|...| +.++|+.+|+++.+.+ +...+..++.+|.. .+++++|+.+++++.+.+ ++.++..|+.
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666655 6677777777777653 56666677777766 677777777777765543 3456667777
Q ss_pred HHHh----cCCHHHHHHHHHHHHh
Q 003122 731 LLGK----SGRIESMMKLFFKIVS 750 (846)
Q Consensus 731 ~~~~----~g~~~~A~~~~~~~~~ 750 (846)
+|.. .+++++|...|+++++
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHH
Confidence 7776 6777777777777777
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-18 Score=187.99 Aligned_cols=369 Identities=12% Similarity=0.051 Sum_probs=216.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cC
Q 003122 350 NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYAS----HGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGR----SQ 421 (846)
Q Consensus 350 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g 421 (846)
.+++++|...|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 344444444444444332 23333344444444 444444444444444332 33333344444444 34
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 003122 422 QPVKAREVFNMMRINNLKPNLVSYSALIDAYGS----NGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGR----CGRK 493 (846)
Q Consensus 422 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~ 493 (846)
++++|...|++..+.+ +...+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 4444444444444433 33344444444443 444555555555544432 33444444444444 4455
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhH
Q 003122 494 VNIDAVLLAAEMRDIKLNTVAYNSAIGSYMN----VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR----LSRYSE 565 (846)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 565 (846)
++|...+......+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 55555555544443 44555556666654 667777777777776653 45556666666666 677888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 003122 566 ALGFLDEMMDLKIPLTNQVYSSVISAYSKQ-----GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE---DWEKAC 637 (846)
Q Consensus 566 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~ 637 (846)
|+..|+++.+.+ +...+..+...|... +++++|+..|++..+.| +...+..|...|...| ++++|+
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 888888777653 455666777777776 78888888888887753 5667777777777655 678888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 003122 638 ALFLEMETNNIEPDSIACSALMRAFNK----GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL----LRDWKTTIDL 709 (846)
Q Consensus 638 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 709 (846)
++|++..+.| +...+..|...|.. .+++++|+.+|+++.+.+ +...+..++.+|.. .+++++|..+
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888888753 56677777777777 778888888888888765 46677778888877 7888888888
Q ss_pred HHhhccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 710 IKQMEPSFHV--VSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 710 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
++++...++. .+..+...++.++.. +.+.|.+...+.++
T Consensus 426 ~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 426 FDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHH
Confidence 8887766532 134445555554332 34555555555554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=189.33 Aligned_cols=285 Identities=12% Similarity=0.053 Sum_probs=221.6
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 509 KLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSV 588 (846)
Q Consensus 509 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 588 (846)
+.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|..+++++++.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455667777788888888888888888887753 3344556667777888888888888888888754 5567788888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 589 ISAYSKQG-LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ 667 (846)
Q Consensus 589 ~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 667 (846)
+..+...| ++++|...|+++.... +.+...|..++..+...|++++|+..|+++.+.. +.+...+..++..|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 88888888 8888888888888753 3347778888888888889999998888888742 2235667778888888899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC--------ccchhhHHHHHHHHHhcCCHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH--------VVSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~ 739 (846)
+++|+..++++++..+. +...+..++.++...|++++|+..++++....+ .....++..++.+|...|+++
T Consensus 175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999888887655 677888888888889999999888887754421 224568888999999999999
Q ss_pred HHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHH
Q 003122 740 SMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFA 802 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 802 (846)
+|...++++++ ..| +..+|..++.+|...|++++|+..++++.+ +.|+ +..+..++..+
T Consensus 254 ~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHH
Confidence 99999999998 777 456888889999999999999999998876 4554 44566666655
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-17 Score=185.10 Aligned_cols=218 Identities=11% Similarity=0.122 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 564 SEALGFLDEMMDLKIPLTNQVYSSVISAYSK-------QGLIA-------EAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 564 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
+.+..+|++++.. .|.+...|..++..+.+ .|+++ +|..+|++.++.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 3667788888775 35677788888777765 68876 788888888752123347788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPD-S-IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA-CSLLRDWKTT 706 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 706 (846)
.|++++|..+|+++++ +.|+ . ..|..++..+.+.|+.++|+.+|+++++..+. +...+...+.. +...|+.++|
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHH
Confidence 8888888888888887 4554 2 47888888888888888888888888875433 33344333333 3357888888
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG-AEAN--FNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
..+++++....|. ++.+|..++..+.+.|+.++|+.+|++++..+ ..|+ ...|...+......|+.+.+..+++++
T Consensus 411 ~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887777665 66788888888888888888888888888731 1232 226767777777788888888888887
Q ss_pred HHC
Q 003122 784 EDA 786 (846)
Q Consensus 784 ~~~ 786 (846)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-19 Score=186.69 Aligned_cols=285 Identities=9% Similarity=0.032 Sum_probs=211.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 003122 482 TLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLS 561 (846)
Q Consensus 482 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 561 (846)
.+...+...|++++|..+++.+.... +.+...+..++..+...|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhh
Confidence 33333444444444444444443332 2244455556667777888888888888877753 335667777888888888
Q ss_pred -CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 562 -RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALF 640 (846)
Q Consensus 562 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (846)
++++|...++++++.. +.+...+..++.++...|++++|...|+++.+.. +.+...+..++..|...|++++|...+
T Consensus 105 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp SCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888888764 5567778888888888888888888888888753 234667777888888888899999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003122 641 LEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDI--------TFSDSIFFEMVLACSLLRDWKTTIDLIKQ 712 (846)
Q Consensus 641 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (846)
+++.+.. +.+..++..++..+...|++++|+..++++++... ......+..++.++...|++++|+..+++
T Consensus 183 ~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 183 SQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8888742 33467888888888889999999998888886421 22456888889999999999999999998
Q ss_pred hccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHH-HhcCCHH
Q 003122 713 MEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNL-LAAGNWR 774 (846)
Q Consensus 713 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~~~ 774 (846)
+....|. +..+|..++.+|...|++++|.+.++++++ +.| +...+..++.+| ...|+.+
T Consensus 262 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 262 ALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 8877776 677889999999999999999999999998 888 556888888887 4556543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-17 Score=185.46 Aligned_cols=221 Identities=7% Similarity=-0.007 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 599 AEAESMFNMMKMSGCSPDVITYTAMLHAYNT-------AEDWE-------KACALFLEMETNNIEPDSIACSALMRAFNK 664 (846)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 664 (846)
++|..+|++++... +.+...|..++..+.+ .|+++ +|..+|++.++.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 47888999998852 3468899999988875 78877 999999999863123357899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH-HHhcCCHHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDITFSD-SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL-LGKSGRIESMM 742 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~ 742 (846)
.|++++|..+|+++++..+. +. ..|...+..+.+.|++++|+++++++....|. ....|...+.. +...|+.++|.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 99999999999999996543 33 58888999999999999999999999877665 44555444444 34689999999
Q ss_pred HHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHhHHHHHHHHHhcCCcchHHHHHHHH
Q 003122 743 KLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGI-QPS--YGMFRDIVSFAQTRGGAEYAAIIQERI 818 (846)
Q Consensus 743 ~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~l 818 (846)
.+|+++++ ..|+ ...|..++..+.+.|+.++|..+|+++...+. .|+ ...+...+.+....|+.+.+..+.+++
T Consensus 412 ~~~e~al~--~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHH--HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999 8894 66999999999999999999999999998632 222 226777788888899999999999998
Q ss_pred HHHhhc
Q 003122 819 ESLRMK 824 (846)
Q Consensus 819 ~~l~~~ 824 (846)
.+..++
T Consensus 490 ~~~~p~ 495 (530)
T 2ooe_A 490 FTAFRE 495 (530)
T ss_dssp HHHTHH
T ss_pred HHHCch
Confidence 887664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=190.60 Aligned_cols=257 Identities=13% Similarity=0.057 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003122 514 AYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYS 593 (846)
Q Consensus 514 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 593 (846)
.+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..++.+|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555555442 2244445555555555555555555555555432 334445555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHH
Q 003122 594 KQGLIAEAESMFNMMKMSGCSPD-VITYT----------------AMLHAYNTAEDWEKACALFLEMETNNIEP---DSI 653 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~----------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~ 653 (846)
..|++++|...|+++.... |+ ...+. .+...+ ..|++++|+..|+++.+. .| +..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--~p~~~~~~ 218 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--DPTSIDPD 218 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--STTSCCHH
T ss_pred HcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--CcCcccHH
Confidence 5555555555555555432 21 11111 111122 444445555555544442 22 234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
++..++.+|...|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.+|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 4444444444445555555555544443322 3344444444444444444444444444444333 3344444444444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEAN------------FNTYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
..|++++|...|+++++ +.|+ ..+|..++.+|...|++++|..+++
T Consensus 297 ~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 297 NLGAHREAVEHFLEALN--MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHTCHHHHHHHHHHHHH--HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 44444444444444444 3332 2344444444444444444444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=191.02 Aligned_cols=291 Identities=10% Similarity=0.035 Sum_probs=236.7
Q ss_pred HHhcCCHHHHHH-HHHHHhhCCC-CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 522 YMNVGEYEKAIA-LYKCMKKRKV-MP--DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGL 597 (846)
Q Consensus 522 ~~~~g~~~~A~~-~~~~~~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 597 (846)
+...|++++|+. .|++...... .| +...+..+...+...|++++|...++++++.. +.+..++..++.++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688999998 8887665421 11 34567788999999999999999999999975 6788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHH
Q 003122 598 IAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI-ACSA---------------LMRA 661 (846)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~---------------l~~~ 661 (846)
+++|...|+++.+.. +.+..++..++.+|...|++++|+..++++.+. .|+.. .+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999999864 446899999999999999999999999999984 34322 2211 1333
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDITF-SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
+...|++++|+..++++++..+.. +...+..++.++...|++++|+..++++....|. +..+|..++.++...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHH
Confidence 448999999999999999876543 5788999999999999999999999999888877 67899999999999999999
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------------HHhHHHHHHHHHhcCC
Q 003122 741 MMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS------------YGMFRDIVSFAQTRGG 807 (846)
Q Consensus 741 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------------~~~~~~l~~~~~~~~~ 807 (846)
|+..|+++++ +.| +..+|..++.+|.+.|++++|+..++++.+. .|+ ...+..++..+...|+
T Consensus 270 A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 270 AVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 9999999999 888 4669999999999999999999999999874 232 4678899999999999
Q ss_pred cchHHHHHHHHHHH
Q 003122 808 AEYAAIIQERIESL 821 (846)
Q Consensus 808 ~~~a~~~~~~l~~l 821 (846)
.++|..++++..+.
T Consensus 346 ~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 346 SDAYGAADARDLST 359 (368)
T ss_dssp GGGHHHHHTTCHHH
T ss_pred hHhHHHhHHHHHHH
Confidence 99999998765543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-19 Score=187.30 Aligned_cols=260 Identities=11% Similarity=0.006 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISA 591 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (846)
...+..+...+.+.|++++|+..|+++++.. +.+..++..+...+...|++++|+..|+++++.. +.+..++..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666666777777777777777766653 3355666667777777777777777777766653 4456666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHH
Q 003122 592 YSKQGLIAEAESMFNMMKMSGCSPD-----------VITYTAMLHAYNTAEDWEKACALFLEMETNNIEP---DSIACSA 657 (846)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~ 657 (846)
|...|++++|+..|+++.+.. |+ ...+..++..+...|++++|+..|+++.+. .| +..++..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 218 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTG 218 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHH
Confidence 777777777777777666531 22 112223455566666666666666666653 22 3556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
++..|...|++++|+..|+++++..+. +...+..++.+|...|++++|+..++++....|. +..+|..++.+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 666666666666666666666665443 4555666666666666666666666666555554 45556666666666666
Q ss_pred HHHHHHHHHHHHhcCCCcC-------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 738 IESMMKLFFKIVSSGAEAN-------------FNTYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
+++|...|+++++ +.|+ ...|..++.++...|+.+.|....+
T Consensus 297 ~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 297 YREAVSNFLTALS--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CHHHHHHHHHHHH--HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHH--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6666666666665 4443 2355556666666666655554443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=185.62 Aligned_cols=265 Identities=9% Similarity=0.013 Sum_probs=221.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
+...+..+...+.+.|++++|+.+|+++++.. +.+..++..++.+|...|++++|+..|++++... +.+..+|..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34558888999999999999999999999875 6788999999999999999999999999999863 345899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDS-----------IACSALMRAFNKGGQPSKVLLVAEFMREQDITF-SDSIFFEM 693 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 693 (846)
+|...|++++|+..|+++.+ ..|+. ..+..++..+.+.|++++|+.+++++++.++.. +...+..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999987 33432 223345788999999999999999999976542 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCC
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGN 772 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 772 (846)
+.++...|++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..+|..++.+|...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCC
Confidence 99999999999999999999988887 778999999999999999999999999999 8895 6699999999999999
Q ss_pred HHHHHHHHHHHHHCCCC---C--------CHHhHHHHHHHHHhcCCcchHHHHHHH
Q 003122 773 WRKYIEVLQWMEDAGIQ---P--------SYGMFRDIVSFAQTRGGAEYAAIIQER 817 (846)
Q Consensus 773 ~~~A~~~~~~~~~~g~~---p--------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 817 (846)
+++|+..++++.+..-. + +...+..+...+...|..+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999874211 0 245678888888888888777766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-18 Score=176.81 Aligned_cols=263 Identities=8% Similarity=-0.023 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISA 591 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (846)
...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++++++.. +.+..++..++..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445667777788888888888888877653 3366677777888888888888888888887753 5567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003122 592 YSKQGLIAEAESMFNMMKMSGCSPD-VITYTAM--------------LH-AYNTAEDWEKACALFLEMETNNIEPDSIAC 655 (846)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 655 (846)
|...|++++|...++++.... |+ ...+..+ .. .+...|++++|...++++.+.. +.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 888888888888888887742 22 2223222 22 3666777888888888887742 3356677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
..++..|...|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.+|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 77788888888888888888888776544 5677777788888888888888888877766665 566777888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCcC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 736 GRIESMMKLFFKIVSSGAEAN-------------FNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
|++++|.+.++++++ ..|+ ..+|..++.+|.+.|++++|..+++++
T Consensus 254 g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIY--MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHH--HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHH--hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888888888888877 6665 347777777888888888887777654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-17 Score=180.48 Aligned_cols=382 Identities=11% Similarity=-0.049 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C---CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-
Q 003122 372 IVSYNALMAAYASHGMSKEALSVFNEIKKN-----G---LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN-----N- 437 (846)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~- 437 (846)
...|+.|...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456788888888888888888888776541 1 1123456777777777788888887777766531 0
Q ss_pred -CCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCccC
Q 003122 438 -LKPNLVSYSALIDAYGS--NGLLAEAVEVFREMEQDGIEPNIVSICTLLAA---CGRCGRKVNIDAVLLAAEMRDIKLN 511 (846)
Q Consensus 438 -~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~ 511 (846)
......++..+..++.. .+++++|++.|++.++.. +.+...+..+..+ +...++.++|...+..+...+ +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01123455554444433 345777777777777642 2223333333222 223344444444444444332 123
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 512 TVAYNSAIGSYMN----VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS 587 (846)
Q Consensus 512 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 587 (846)
..++..+...+.. .|++++|...+++..... +.+...+..+...+...|++++|+..++++++.. |.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 3333333322222 233344444444443332 2233334444444444444444444444444432 233333433
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ 667 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 667 (846)
++.+|...+....+.. ...........+.+++|...+++..+.. +.+..++..++..|...|+
T Consensus 287 lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 3333322110000000 0000000011123566777777766631 2224456667777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDS--IFFEMVL-ACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
+++|+..|+++++..+.+... .+..++. .+...|++++|+..++++....|. +.. ..+..+.+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~-~~~----------~~~~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK-SRE----------KEKMKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC-CHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHH----------HHHHHHHHHHH
Confidence 777777777777754432221 2233333 234567777777777777666665 211 11223445566
Q ss_pred HHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 745 FFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 745 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 787 (846)
++++++ ..| +..+|..|+.+|...|++++|++.|+++++.|
T Consensus 419 ~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 419 AKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHH--HCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666666 666 45577777777777788888888777777643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=169.60 Aligned_cols=256 Identities=11% Similarity=0.031 Sum_probs=195.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 521 SYMNVGEYEKAIALYKCMKKRKVMPDS--VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI 598 (846)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 598 (846)
-....|+++.|+..++..... .|+. .....+..+|...|++++|+..++. .-+|+..++..++..+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345678888888888776554 3333 3445667888888888888876644 1356677788888888888889
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003122 599 AEAESMFNMMKMSGCSP-DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEF 677 (846)
Q Consensus 599 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (846)
++|++.++++...+..| +...+..++..+...|++++|++.+++ +.+..++..++..|.+.|++++|+..+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998888765445 466777788888888999999988887 35677888888888899999999999999
Q ss_pred HHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 678 MREQDITFSDSIF--FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 678 ~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
+++.++. +.... ..++..+...|++++|+.+++++....|. ++.+|+.++.++...|++++|++.|+++++ ..|
T Consensus 156 ~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p 231 (291)
T 3mkr_A 156 MQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDS 231 (291)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 8886543 22111 12224444568899999999988887776 778888999999999999999999999998 888
Q ss_pred -CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHh
Q 003122 756 -NFNTYSILLKNLLAAGNWRK-YIEVLQWMEDAGIQPSYGM 794 (846)
Q Consensus 756 -~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~ 794 (846)
+..++..++..+...|++.+ +..+++++.+ +.|+...
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 55688888988889998876 5678888877 5676554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-16 Score=177.40 Aligned_cols=383 Identities=12% Similarity=-0.032 Sum_probs=259.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 003122 336 DIVTFTSIIHLYSVNGQIENCKGVFNTMLAE--------GLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKN-----G 402 (846)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 402 (846)
....|+.|..++...|++++|++.|++.++. .......+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999998653 11224568999999999999999999999987652 1
Q ss_pred -CCC-CHhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHCCCCC
Q 003122 403 -LCP-DIVSYTSLLNAYGR--SQQPVKAREVFNMMRINNLKPNLVSYSALIDA---YGSNGLLAEAVEVFREMEQDGIEP 475 (846)
Q Consensus 403 -~~p-~~~~~~~ll~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~g~~~ 475 (846)
..+ ...++..+..++.. .+++++|...|++..+.. +-+...+..+... +...++.++|++.+++.++.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 111 24556666655554 457999999999998764 3355556555554 345688889999999998864 34
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003122 476 NIVSICTLLAACGR----CGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYT 551 (846)
Q Consensus 476 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 551 (846)
+...+..+...+.. .|+.++|...++...... +.+..++..+...|...|++++|+..|++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55666666555544 467889999999888764 4578889999999999999999999999998863 33566777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003122 552 VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE 631 (846)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 631 (846)
.+...|...+... .... ...........+.+++|...|++..... +.+..++..++..|...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 7766653321111 1110 0011111222344688899999888753 334677888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH----HHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 632 DWEKACALFLEMETNNIEPDSI----ACSALMR-AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 632 ~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 706 (846)
++++|+..|+++++. .|+.. .+..+.. .+.+.|+.++|+..|+++++..+. ..... +....+
T Consensus 349 ~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l 415 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKL 415 (472)
T ss_dssp CHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHH
Confidence 999999999999984 44432 2333333 345789999999999999986554 22111 223445
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
..++++....+|. ++.+|..|+.+|...|++++|++.|+++++ +.|
T Consensus 416 ~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe--~~~ 461 (472)
T 4g1t_A 416 QKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLE--SGS 461 (472)
T ss_dssp HHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 5666777667777 678999999999999999999999999999 555
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=174.08 Aligned_cols=266 Identities=10% Similarity=0.017 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003122 548 VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAY 627 (846)
Q Consensus 548 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 627 (846)
..+..+...+...|++++|..+++++++.. +.+..++..++.++...|++++|...|+++.+.. +.+..++..++..|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 346677888999999999999999999864 6688899999999999999999999999999863 44688999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 003122 628 NTAEDWEKACALFLEMETNNIEPD-SIACSAL--------------MR-AFNKGGQPSKVLLVAEFMREQDITFSDSIFF 691 (846)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 691 (846)
...|++++|+..++++.+. .|+ ...+..+ .. .+...|++++|+..++++++..+. +...+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHH
Confidence 9999999999999999984 343 2233332 22 377889999999999999987765 788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhc
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAA 770 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 770 (846)
.++.++...|++++|+..++++....|. +..+|..++.++...|++++|...++++++ ..| +..+|..++.+|...
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999888877 678899999999999999999999999999 788 466999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-------------HHhHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 003122 771 GNWRKYIEVLQWMEDAGIQPS-------------YGMFRDIVSFAQTRGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 771 g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~ 823 (846)
|++++|+..++++.+. .|+ ...+..++..+...|+.++|..++++..+..+
T Consensus 254 g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp TCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999999999999874 344 55778889999999999999999876655443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-17 Score=166.10 Aligned_cols=246 Identities=10% Similarity=0.055 Sum_probs=179.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q 003122 515 YNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKI-PLTNQVYSSVISAYS 593 (846)
Q Consensus 515 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 593 (846)
...+..+|...|+++.|+..++.. .+|+..++..+...+...++.++|++.+++++..+. |.+...+..++.++.
T Consensus 37 ~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 37 DVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 344566777788888777655431 245666777777788888888888888888877653 445667777778888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhH
Q 003122 594 KQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIAC---SALMRAFNKGGQPSK 670 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~g~~~~ 670 (846)
..|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.+. .|+.... ..++..+...|++++
T Consensus 113 ~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp HTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred HCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHH
Confidence 88888888888876 356778888888888888888888888888873 4553211 123344445688888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 003122 671 VLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES-MMKLFFKIV 749 (846)
Q Consensus 671 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 749 (846)
|+.+|+++++..+. +...++.++.++...|++++|+..++++....|. ++.++..++..+...|+.++ +.+++++++
T Consensus 185 A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 185 AYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88888888887554 7778888888888888888888888888888777 77888889988888888765 578888998
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 750 SSGAEANFNTYSILLKNLLAAGNWRKYIEV 779 (846)
Q Consensus 750 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 779 (846)
+ +.|+..... +...+.+.++++..-
T Consensus 263 ~--~~P~~~~~~---d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 263 D--AHRSHPFIK---EYRAKENDFDRLVLQ 287 (291)
T ss_dssp H--HCTTCHHHH---HHHHHHHHHHHHHHH
T ss_pred H--hCCCChHHH---HHHHHHHHHHHHHHH
Confidence 8 888654322 234445555555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.8e-17 Score=166.79 Aligned_cols=283 Identities=14% Similarity=0.203 Sum_probs=128.3
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003122 136 QRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAM 215 (846)
Q Consensus 136 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 215 (846)
+.|++++|.++++.+. .+.+|..|+.++.+.|++++|.+.|... +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4578999999998773 2358999999999999999999999653 56778999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 003122 216 NIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTN 295 (846)
Q Consensus 216 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 295 (846)
..++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 977766663 4557788899999999999999888874 267779999999999999999999999977
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003122 296 IRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSY 375 (846)
Q Consensus 296 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 375 (846)
..|..++.++.+.|++++|++.++++. ++.+|..++.+|...|+++.|......+. ..|+ -.
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l 210 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--EL 210 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hH
Confidence 368899999999999999999999882 68899999999999999999966655422 2333 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCc------CHHHHHH
Q 003122 376 NALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRS--QQPVKAREVFNMMRINNLKP------NLVSYSA 447 (846)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~ 447 (846)
..++..|.+.|.+++|..+++..+... ......|+-|.-.|++- +++.+.++.|..- -+++| +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 568889999999999999999987643 33456677776666654 3444555544311 12222 3456888
Q ss_pred HHHHHHhCCCHHHHHHHH
Q 003122 448 LIDAYGSNGLLAEAVEVF 465 (846)
Q Consensus 448 li~~~~~~g~~~~A~~~~ 465 (846)
+...|...++++.|....
T Consensus 288 ~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHH
Confidence 888888888888887743
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-17 Score=169.55 Aligned_cols=281 Identities=14% Similarity=0.205 Sum_probs=87.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 312 KLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEA 391 (846)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 391 (846)
+.|++++|.++++++ ++..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|
T Consensus 15 ~~~~ld~A~~fae~~--------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 445555555555554 12335555555555555555555555432 2444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003122 392 LSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQD 471 (846)
Q Consensus 392 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (846)
+..++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+++.|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 5544444432 2334445555555555555555554442 234445555555555555555555555533
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003122 472 GIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYT 551 (846)
Q Consensus 472 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 551 (846)
..|..++.++.+.|++++|++.++++ .+..+|.
T Consensus 149 -----------------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk 181 (449)
T 1b89_A 149 -----------------------------------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 181 (449)
T ss_dssp -----------------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred -----------------------------------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHH
Confidence 13555666666666666666666655 1455666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 003122 552 VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA- 630 (846)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~- 630 (846)
.++.+|...|+++.|...... +...+.-...++..|.+.|++++|+.+++..+... +-....|+.|..+|++-
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 255 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC
Confidence 666666666666666433332 11222333345566666666666666666665432 23355555555555542
Q ss_pred -CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChhHHHH
Q 003122 631 -EDWEKACALFLEMETNNIEP------DSIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 631 -g~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
++..+.+++|..-+ +++| +...|.-+.-.|.+.++++.|..
T Consensus 256 p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 256 PQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 23333333332211 1222 23346666666666677666654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=154.89 Aligned_cols=198 Identities=13% Similarity=0.024 Sum_probs=144.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 003122 579 PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSA 657 (846)
Q Consensus 579 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ 657 (846)
|++...+..++..+.+.|++++|+..|+++++.. +.+...+..++.++.+.|++++|+..|+++++ +.|+ ...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence 5566677777777888888888888888877653 33477777788888888888888888888877 3443 567777
Q ss_pred HHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH
Q 003122 658 LMRAFNKG-----------GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN 726 (846)
Q Consensus 658 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 726 (846)
+..++... |++++|+..++++++.+|. +...+..++.++...|++++|+..++++.... .++.++.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 77777777 8888888888888887665 67788888888888888888888888887766 3778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
.++.+|...|++++|+..|+++++ +.| +...+..++.+|...|++++|+..+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 899999999999999999999998 888 45688888888999999999988888764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-16 Score=156.78 Aligned_cols=223 Identities=14% Similarity=0.070 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHH
Q 003122 548 VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSG--CSPD----VITYT 621 (846)
Q Consensus 548 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~ 621 (846)
..+..+...+...|++++|+.+++++++.. .+..++..++.+|...|++++|+..++++.... ..++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666777777666666654 556666667777777777777777777666531 0112 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
.++..|...|++++|+..|+++.+ +.|+. ..+.+.|++++|+..++++....+. +...+..++.++...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 777777777777777777777776 34553 3355567777888888877775543 5566777777888888
Q ss_pred CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 702 DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
++++|+..++++....|. +..+|..++.+|...|++++|...++++++ ..|+ ..+|..++.+|.+.|++++|+..+
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888887777666 567788888888888888888888888888 7774 568888888888888888888888
Q ss_pred HHHHH
Q 003122 781 QWMED 785 (846)
Q Consensus 781 ~~~~~ 785 (846)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-15 Score=152.84 Aligned_cols=226 Identities=8% Similarity=0.019 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CCC----HHHH
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKI--PLT----NQVY 585 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 585 (846)
...+..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|+..++++++... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788888999999999999999988876 6778888999999999999999999999886431 112 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003122 586 SSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNK 664 (846)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 664 (846)
..++.+|...|++++|...|+++... .|+. ..+...|++++|...++++... .|+ ...+..++..+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 89999999999999999999999985 4553 3456678899999999999983 444 5678889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
.|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..+|..++.++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999987765 7888999999999999999999999999888877 678899999999999999999999
Q ss_pred HHHHHhcCCC
Q 003122 745 FFKIVSSGAE 754 (846)
Q Consensus 745 ~~~~~~~g~~ 754 (846)
++++++ +.
T Consensus 230 ~~~a~~--~~ 237 (258)
T 3uq3_A 230 LDAART--KD 237 (258)
T ss_dssp HHHHHH--HH
T ss_pred HHHHHH--hC
Confidence 999998 77
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.8e-17 Score=179.56 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 003122 196 ETYNALISAHGRAGQWRWAMNIFDDML---RAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVL 272 (846)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 272 (846)
.||++||++||+.|++++|.++|++|. +.|+.||..|||+||++||+.|++++|.++|++|.+.|+.||++|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 344444444444444444444444433 22444555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCC-HHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 003122 273 SAYKNGAQ-YSKALSYFELMKGTNIRPDTTTHNIVIY 308 (846)
Q Consensus 273 ~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~ 308 (846)
.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 55555444 2444455555555555555555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-15 Score=157.84 Aligned_cols=245 Identities=7% Similarity=0.034 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSR-YSEALGFLDEMMDLKIPLTNQVYSSVIS 590 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 590 (846)
..+|+.+...+.+.|++++|+..|+++++.. +-+...|..+...+...|+ +++|+..++++++.+ +.+..+|..++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3445556666666666666666666666543 2245556666666666664 666666666666653 445566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCh
Q 003122 591 AYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNK-GGQP 668 (846)
Q Consensus 591 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~-~g~~ 668 (846)
++...|++++|+..|++++... +-+...|..+..++...|++++|+..|+++++ +.| +..+|+.+..++.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 6666666666666666666642 22456666666666666666666666666666 233 35566666666666 4444
Q ss_pred hHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-----
Q 003122 669 SKV-----LLVAEFMREQDITFSDSIFFEMVLACSLLR--DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG----- 736 (846)
Q Consensus 669 ~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 736 (846)
++| +..|+++++.++. +...|..++.++...| ++++|++.++++ ...|. +..++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhccccc
Confidence 555 3566666665544 4555556666665555 456666666655 34443 4455556666665542
Q ss_pred ----CHHHHHHHHHHH-HhcCCCcCHH-HHHHHHHH
Q 003122 737 ----RIESMMKLFFKI-VSSGAEANFN-TYSILLKN 766 (846)
Q Consensus 737 ----~~~~A~~~~~~~-~~~g~~p~~~-~~~~l~~~ 766 (846)
.+++|+++|+++ ++ ++|... .|..++..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE--KDTIRKEYWRYIGRS 362 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 245666666666 55 566333 44444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=152.52 Aligned_cols=236 Identities=8% Similarity=-0.043 Sum_probs=156.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD--VITYTAMLHAY 627 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~ 627 (846)
+......+...|++++|+..++++++.. +.+..++..++.+|...|++++|+..++++......++ ...|..++..|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445555666677777777777766653 33444666666677777777777777777766321111 33467777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 628 NTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTI 707 (846)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 707 (846)
...|++++|+..|+++.+.. +.+..++..++.+|...|++++|+..++++++..+. +...+..++..+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777631 223556777777777777777777777777766444 5566666663344445777777
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC---cCH------HHHHHHHHHHHhcCCHHH
Q 003122 708 DLIKQMEPSFHVVSIGLLNQLLHLLGKSGR---IESMMKLFFKIVSSGAE---ANF------NTYSILLKNLLAAGNWRK 775 (846)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~---p~~------~~~~~l~~~~~~~g~~~~ 775 (846)
..++++....|. +..++..++.++...|+ +++|...++++++ .. |+. .+|..++..|...|++++
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE--VCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH--HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH--HHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 777777766666 45667777777777777 7778888888776 33 431 367777788888888888
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 003122 776 YIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 776 A~~~~~~~~~~g~~p~~~ 793 (846)
|+..++++.+ +.|+..
T Consensus 240 A~~~~~~al~--~~p~~~ 255 (272)
T 3u4t_A 240 ADAAWKNILA--LDPTNK 255 (272)
T ss_dssp HHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHh--cCccHH
Confidence 8888888877 455543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-15 Score=147.52 Aligned_cols=198 Identities=15% Similarity=0.028 Sum_probs=164.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 614 SPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE 692 (846)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 692 (846)
+++...+..++..+.+.|++++|+..|+++++. .| +...+..+..++.+.|++++|+..++++++.+|. +...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 456788999999999999999999999999984 45 5788999999999999999999999999998776 7888999
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHH
Q 003122 693 MVLACSLL-----------RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYS 761 (846)
Q Consensus 693 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 761 (846)
++.++... |++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++. ..+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALAL--EDTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--ccchHHHH
Confidence 99999999 9999999999999999888 7789999999999999999999999999994 46677999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCcchHHHHHHHHH
Q 003122 762 ILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQTRGGAEYAAIIQERIE 819 (846)
Q Consensus 762 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~l~ 819 (846)
.++.+|...|++++|+..++++.+. .| ++..+..++..+...|+.++|...++++-
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999884 55 45678888999999999999998887653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-17 Score=180.95 Aligned_cols=165 Identities=14% Similarity=0.165 Sum_probs=136.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003122 158 ARNDIYNMMIRLHARHNQIDKARGLFFEMQK---WRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYN 234 (846)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 234 (846)
....+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------hHHHHHHH
Q 003122 235 NLINACGSTGN-WREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD------TTTHNIVI 307 (846)
Q Consensus 235 ~ll~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~li 307 (846)
+||.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999998 578999999999999999999999999776553 344444444 3344444 55666677
Q ss_pred HHHHhcC---------CHHHHHHHHHHHH
Q 003122 308 YCLVKLG---------QYDKAIDLFHSMR 327 (846)
Q Consensus 308 ~~~~~~g---------~~~~A~~~~~~~~ 327 (846)
+.|.+.+ ..++-.++|++-+
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 7777655 2456666665543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-15 Score=157.42 Aligned_cols=244 Identities=9% Similarity=0.045 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGL-IAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
...|..+...+...|++++|+..++++++.. |.+..+|..++.++...|+ +++|+..|++++... +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4467778888899999999999999999875 6678899999999999997 999999999999863 335899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL-LRDW 703 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 703 (846)
++...|++++|+..|+++++ +.| +..+|..+..++.+.|++++|+..|+++++.++. +...|+.++.++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998 445 5789999999999999999999999999998877 88899999999998 6665
Q ss_pred HHH-----HHHHHhhccCCCccchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcC----
Q 003122 704 KTT-----IDLIKQMEPSFHVVSIGLLNQLLHLLGKSG--RIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAG---- 771 (846)
Q Consensus 704 ~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g---- 771 (846)
++| +..++++....|. +..+|+.++.++...| ++++|.+.+.++ + ..|+ ..++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccc
Confidence 777 5889999888888 7789999999999988 699999999988 6 7885 568899999998875
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCHH-hHHHHHHH
Q 003122 772 -----NWRKYIEVLQWM-EDAGIQPSYG-MFRDIVSF 801 (846)
Q Consensus 772 -----~~~~A~~~~~~~-~~~g~~p~~~-~~~~l~~~ 801 (846)
..++|+++++++ .+ +.|... .|..+...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRS 362 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 258999999998 55 555433 34444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-15 Score=159.96 Aligned_cols=346 Identities=11% Similarity=0.035 Sum_probs=207.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 003122 378 LMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQP---VKAREVFNMMRINNLKPNLVSYSALIDAYGS 454 (846)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 454 (846)
+...+.+.|++++|..+|++..+.| +...+..|...|...|+. ++|...|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4556667777777877777776654 334445566666666666 7777777776643 44445555554444
Q ss_pred CC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHH
Q 003122 455 NG-----LLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYE 529 (846)
Q Consensus 455 ~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 529 (846)
.+ ++++|+..|++..+.|. ++ .+..|...|...+....+ .
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~--------------------------------~ 126 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPN--------------------------------V 126 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTT--------------------------------C
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCC--------------------------------H
Confidence 43 56677777777776542 22 333333333322221111 2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 003122 530 KAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALG----FLDEMMDLKIPLTNQVYSSVISAYSKQG---LIAEAE 602 (846)
Q Consensus 530 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 602 (846)
++...+......| +...+..+...|...+.++++.. +++.... .+...+..|..+|...| +.++|+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHH
Confidence 2334444444333 23344455556666554443333 3333322 22237777777888888 888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHH
Q 003122 603 SMFNMMKMSGCSPDVITYTAMLHAYNTA----EDWEKACALFLEMETNNIEPDSIACSALMRA-F--NKGGQPSKVLLVA 675 (846)
Q Consensus 603 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~ 675 (846)
..|++..+.| .++...+..|...|... +++++|+.+|++.. . -+...+..|... | ...|++++|+.+|
T Consensus 200 ~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 200 KQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 8888888776 45566666777777554 68888888888876 2 245566666666 3 4578888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHH
Q 003122 676 EFMREQDITFSDSIFFEMVLACSLLR-----DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----SGRIESMMKLFF 746 (846)
Q Consensus 676 ~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 746 (846)
+++.+.| +......++.+|. .| ++++|+.++++.. +. ++.++..|+.+|.. ..++++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR-EVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT-CHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC-CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 8888866 6777778888777 55 8899999998887 22 56778888888876 348999999999
Q ss_pred HHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 003122 747 KIVSSGAEANFNTYSILLKNLLA----AGNWRKYIEVLQWMEDAGI 788 (846)
Q Consensus 747 ~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 788 (846)
++.+.| +......|+..|.. ..+..+|..+|+++.+.|.
T Consensus 347 ~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 347 TAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 998743 34567778888775 3578899999999987763
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-15 Score=148.97 Aligned_cols=238 Identities=12% Similarity=0.001 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMR 660 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~ 660 (846)
..+...+..+...|++++|+..|+++++.. +.+...+..++.+|...|++++|+..++++++.+..++ ..+|..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345667888999999999999999999863 23466899999999999999999999999998432222 445889999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
++...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. +..+|..++..+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997766 6788999999999999999999999999988877 77889999945555669999
Q ss_pred HHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCCH------HhHHHHHHHHHhcCCcc
Q 003122 741 MMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGN---WRKYIEVLQWMEDAG-IQPSY------GMFRDIVSFAQTRGGAE 809 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~~------~~~~~l~~~~~~~~~~~ 809 (846)
|.+.|+++++ ..|+ ...+..++.++...|+ +++|+..++++.+.. -.|++ ..+..++..+...|+.+
T Consensus 161 A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999 8895 6688899999999998 899999999988742 11332 36777889999999999
Q ss_pred hHHHHHHHHHHHhhcc
Q 003122 810 YAAIIQERIESLRMKS 825 (846)
Q Consensus 810 ~a~~~~~~l~~l~~~~ 825 (846)
+|...++++.++.+..
T Consensus 239 ~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 239 KADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccH
Confidence 9999999999987654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-15 Score=161.19 Aligned_cols=110 Identities=7% Similarity=-0.110 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGG-----QPSKVLLVAEFMREQDITFSDSIFFEMVLACSL----L 700 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 700 (846)
.+++++|+.+|++..+.| +..++..|...|. .| ++++|+.+|+++. .| +......++.+|.. .
T Consensus 264 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~ 335 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGK 335 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSS
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCC
Confidence 444444444444444433 3333444444443 22 4444444444444 22 33444444444433 2
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----SGRIESMMKLFFKIVS 750 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 750 (846)
.++++|+.++++....+. +.+...|+.+|.. ..+.++|...|+++.+
T Consensus 336 ~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 336 VYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp CCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 244555555554433221 2234445554442 2355555555555555
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-14 Score=141.28 Aligned_cols=224 Identities=10% Similarity=0.001 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSK----QGLIAEAESMFNMMKMSGCSPDVITYT 621 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 621 (846)
+..++..+...+...|++++|+..|+++.+ +.+...+..++..|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 444555666666666677777777766666 2344566666666776 777777777777776653 566677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 622 AMLHAYNT----AEDWEKACALFLEMETNNIEPDSIACSALMRAFNK----GGQPSKVLLVAEFMREQDITFSDSIFFEM 693 (846)
Q Consensus 622 ~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 693 (846)
.+...|.. .+++++|+..|++..+.+ +..++..+...|.. .|++++|+..|+++.+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777776 777777777777777643 56667777777777 777777777777777754 45566667
Q ss_pred HHHHHh----cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q 003122 694 VLACSL----LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----SGRIESMMKLFFKIVSSGAEANFNTYSILLK 765 (846)
Q Consensus 694 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 765 (846)
+.+|.. .+++++|+.+++++.... ++.++..++.+|.. .+++++|+..|+++++ ..| ...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~~-~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--LEN-GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--TTC-HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--CCC-HHHHHHHHH
Confidence 777766 777777777777766543 34567778888887 8888888888888887 444 557777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCC
Q 003122 766 NLLA----AGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 766 ~~~~----~g~~~~A~~~~~~~~~~g 787 (846)
+|.. .|++++|+..++++.+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8887 888888888888887754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-15 Score=150.90 Aligned_cols=247 Identities=11% Similarity=-0.063 Sum_probs=178.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 524 NVGEYEKAIALYKCMKKRKVM---PDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAE 600 (846)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 600 (846)
..|++++|+..|+++.+.... .+..++..++..+...|++++|...++++++.. +.+..++..++.+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 356788888888888875321 134567777888888888888888888888764 5567888888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
|...|++++... +.+...+..++.+|...|++++|...|+++.+ ..|+.......+..+...|++++|+..++++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888753 33577888888888888888888888888887 445544444444455667888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV---SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
..+. +... ..++..+...++.++|+..++++....+.. ...+|..++.+|...|++++|...|+++++ ..|+.
T Consensus 173 ~~~~-~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 173 KSDK-EQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp HSCC-CSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred cCCc-chHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 5433 3333 346667777788888888888876655532 256778888888888888888888888888 77743
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
. ...+.++...|++++|++.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 2 22355677788888887765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=140.24 Aligned_cols=228 Identities=11% Similarity=0.025 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR----LSRYSEALGFLDEMMDLKIPLTNQVYS 586 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 586 (846)
+..++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677788888899999999999999998884 356778888888888 999999999999999875 778888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 587 SVISAYSK----QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT----AEDWEKACALFLEMETNNIEPDSIACSAL 658 (846)
Q Consensus 587 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 658 (846)
.++..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +..++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999864 78889999999998 999999999999999865 56778888
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCccchhhHHHHHH
Q 003122 659 MRAFNK----GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL----LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLH 730 (846)
Q Consensus 659 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 730 (846)
...|.. .+++++|+..|+++.+.+ +...+..++.+|.. .+++++|+.+++++....+ ..++..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 888888 899999999999999865 56788889999999 9999999999999887755 567889999
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 731 LLGK----SGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 731 ~~~~----~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
+|.. .+++++|.+.|+++++ ..|+..
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~--~~~~~a 256 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK--LGAKGA 256 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH--HTCHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH--cCCHHH
Confidence 9998 9999999999999999 666443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-14 Score=141.09 Aligned_cols=198 Identities=7% Similarity=-0.024 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAF 662 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 662 (846)
..+..++..+...|++++|...|+++.... +.+...+..++..|...|++++|.+.++++.+.. +.+...+..++..|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445555556666666666666666665542 2245566666666666666666666666666531 22455566666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITF-SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 741 (846)
...|++++|+.+++++.+.+..| +...+..++.++...|++++|+..++++....|. +..++..++.+|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666511122 3445556666666666666666666666655554 456667777777777777777
Q ss_pred HHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 742 MKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 742 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
...++++++ ..| +...+..++..|...|++++|...++++.+
T Consensus 195 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777 666 344666677777777777777777777766
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.7e-15 Score=145.65 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 582 NQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA 661 (846)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 661 (846)
...+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+..++..++..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555666666666666666666666532 2345666666666666667777777666666531 2245566666666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 741 (846)
+...|++++|+..++++.+..+. +...+..++.++...|++++|+..++++....|. +..++..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777665543 5566666677777777777777777776665555 556677777777777888888
Q ss_pred HHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 742 MKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 742 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+..++++++ ..| +..++..++.+|...|++++|+..++++.+
T Consensus 179 ~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTE--QDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 888888777 666 355777777778888888888888887776
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-14 Score=139.84 Aligned_cols=208 Identities=12% Similarity=0.026 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHA 626 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (846)
...+..+...+...|++++|...++++++.. +.+..++..++.+|...|++++|.+.|+++.+.. +.+...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3456667777778888888888888887753 5567788888888888888888888888888753 3357788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
|...|++++|+++++++.+.+..|+ ...+..++.++...|++++|+..++++++..+. +...+..++.++...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 8888899999998888877333453 567778888888899999999999998886654 67788888889999999999
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHH
Q 003122 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTY 760 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 760 (846)
|+..++++....|. +..++..++..+...|++++|.+.++++++ ..|+...+
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHH
Confidence 99999988877776 667888899999999999999999999998 78865543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=144.61 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHA 626 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (846)
...|..+...+...|++++|..+++++++.. +.+..++..++..+...|++++|+..|+++.+.. +.+...+..++..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555666666677777777777766643 4456667777777777777777777777776642 2356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 706 (846)
+...|++++|...++++.+.. +.+...+..++..+...|++++|+..++++++..+. +...+..++.++...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777777632 334666777777777788888888888877776544 566777777888888888888
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHH
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNL 767 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 767 (846)
+..++++....|. +..++..++.+|...|++++|...++++++ +.|+ ..++..+....
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHHHHHHHH
Confidence 8888877766665 567788888888889999999999999988 7784 44555544433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-11 Score=138.83 Aligned_cols=217 Identities=8% Similarity=0.047 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 565 EALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAE-SMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEM 643 (846)
Q Consensus 565 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (846)
....+|++++.. ++.+...|...+..+...|+.++|. .+|+..... ++.+...|..++....+.|++++|.++|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666654 3567777777777777777777775 788777764 3445666677777777778888888888777
Q ss_pred HHCC---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C
Q 003122 644 ETNN---------IEPD------------SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL-R 701 (846)
Q Consensus 644 ~~~g---------~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 701 (846)
++.. -.|+ ..+|...+....+.|..+.|..+|.++++.-+......|...+..-... +
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 7521 0131 2357777777777788888888888887751122344554444444444 3
Q ss_pred CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---H-HHHHHHHHHHHhcCCHHHHH
Q 003122 702 DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---F-NTYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~-~~~~~l~~~~~~~g~~~~A~ 777 (846)
+.+.|..+|+.+.+..|. +...|..++......|+.+.|+.+|++++. ..|+ . ..|..++..-.+.|..+.+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~--~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSID--KISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp CCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTT--TSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 478888888887776665 566777777777778888888888888887 4442 2 36666677777778888888
Q ss_pred HHHHHHHHC
Q 003122 778 EVLQWMEDA 786 (846)
Q Consensus 778 ~~~~~~~~~ 786 (846)
.+.+++.+.
T Consensus 562 ~v~~R~~~~ 570 (679)
T 4e6h_A 562 TLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888774
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=157.79 Aligned_cols=311 Identities=11% Similarity=0.031 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCC-CC
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD----SVTYTVLISSCCRLSRYSEALGFLDEMMDL----KIP-LT 581 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~ 581 (846)
....+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++++.. +.+ ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44556666777778888888888888877753 223 245667777788888888888888876542 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHH
Q 003122 582 NQVYSSVISAYSKQGLIAEAESMFNMMKMSGC-SPD----VITYTAMLHAYNTAED--------------------WEKA 636 (846)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A 636 (846)
..++..++..|...|++++|...++++..... .++ ..++..++..|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677788888888888888888887765210 012 4477888888888888 8888
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHH
Q 003122 637 CALFLEMETN----NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDIT-FS----DSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 637 ~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A 706 (846)
+..+++..+. +..+. ..++..++..|...|++++|+..++++++.... ++ ...+..++.++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888887641 11121 346778888888999999999999888863221 11 23677888889999999999
Q ss_pred HHHHHhhccCCCc-----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---C----HHHHHHHHHHHHhcCCHH
Q 003122 707 IDLIKQMEPSFHV-----VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA---N----FNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 707 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~----~~~~~~l~~~~~~~g~~~ 774 (846)
+..++++....+. ....++..++..|...|++++|...++++++ +.+ + ..++..++.+|...|+++
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9998887543322 1256788999999999999999999999987 433 1 447888899999999999
Q ss_pred HHHHHHHHHHHCC----CCCC-HHhHHHHHHHHHhcCCc-chHHHHHHHHHHHhhc
Q 003122 775 KYIEVLQWMEDAG----IQPS-YGMFRDIVSFAQTRGGA-EYAAIIQERIESLRMK 824 (846)
Q Consensus 775 ~A~~~~~~~~~~g----~~p~-~~~~~~l~~~~~~~~~~-~~a~~~~~~l~~l~~~ 824 (846)
+|+..++++.+.. ..+. ...+..++..+...|+. ..+..+.+....+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 380 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSS 380 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--------------
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 9999999876631 1111 22456666666666654 3344444444444333
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=135.77 Aligned_cols=200 Identities=10% Similarity=-0.016 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMR 660 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 660 (846)
+..++..++..+...|++++|...|+++.+.. +.+...+..++..|...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34455566666666666666666666666542 2345666666666666666667766666666531 224556666666
Q ss_pred HHHhc-CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 003122 661 AFNKG-GQPSKVLLVAEFMREQDITF-SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 661 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 738 (846)
.+... |++++|+..++++++.+..| +...+..++.++...|++++|+..++++....|. +..++..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 66666 77777777777666621111 2455666666677777777777777766665555 456677777777777777
Q ss_pred HHHHHHHHHHHhcCCCc-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 739 ESMMKLFFKIVSSGAEA-N-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++|...++++++ ..| + ...+..++..+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQS--RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777777777777 555 4 33555555667777777777777777765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-13 Score=133.70 Aligned_cols=208 Identities=12% Similarity=-0.007 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHA 626 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (846)
...+..++..+...|++++|...++++++.. +.+..++..++..|...|++++|...++++.... +.+..++..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4455666666777777777777777766643 4456677777777777777777777777777653 3356777777778
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 627 YNTA-EDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 627 ~~~~-g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 704 (846)
+... |++++|+..++++.+.+..|+ ...+..++.++...|++++|+..++++++..+. +...+..++.++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888776323343 556777777888888888888888888876544 5677778888888888888
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHH
Q 003122 705 TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNT 759 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 759 (846)
+|+..++++....|..+...+..++..+...|+.++|...++.+.+ ..|+...
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~ 217 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHH
Confidence 8888888877766622566677777888888888888888888887 6775543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5e-14 Score=133.37 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 616 DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMV 694 (846)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 694 (846)
+..+|..++..|...|++++|++.|++.++ +.| +..++..++.+|.+.|++++|+..++++....+. +...+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 345566666666666666666666666665 233 3455666666666666666666666666655443 455555566
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCH
Q 003122 695 LACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNW 773 (846)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 773 (846)
..+...++++.|...++++....|. +..++..++.+|...|++++|++.|+++++ +.| +..+|..++.+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCH
Confidence 6666666666666666666555555 556666677777777777777777777776 666 344666677777777777
Q ss_pred HHHHHHHHHHHH
Q 003122 774 RKYIEVLQWMED 785 (846)
Q Consensus 774 ~~A~~~~~~~~~ 785 (846)
++|+..|+++++
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=157.38 Aligned_cols=270 Identities=10% Similarity=0.031 Sum_probs=198.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHC----C-CCCCHHH
Q 003122 514 AYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDS----VTYTVLISSCCRLSRYSEALGFLDEMMDL----K-IPLTNQV 584 (846)
Q Consensus 514 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~ 584 (846)
.+..+...+...|++++|+..|+++++.+ +.+. ..+..+...+...|++++|+..++++++. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456667778888888888888887753 2232 35677777888888888888888877653 1 1223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 003122 585 YSSVISAYSKQGLIAEAESMFNMMKMS----GCSP-DVITYTAMLHAYNTAED-----------------WEKACALFLE 642 (846)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 642 (846)
+..++..|...|++++|...++++... +-.+ ...++..++..|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777888888888988888888887652 1111 24577888888888888 8888888888
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003122 643 METN----NIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDIT-FS----DSIFFEMVLACSLLRDWKTTIDLIKQ 712 (846)
Q Consensus 643 ~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (846)
..+. +..+ ...++..+...|...|++++|+..++++++.... .+ ...+..++.++...|++++|+..+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7652 1111 1347778888899999999999999988863221 11 22677888889999999999998887
Q ss_pred hccCCCc-----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 713 MEPSFHV-----VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-------FNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 713 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
+....+. ....++..++.+|...|++++|...++++++ +.++ ..++..++.+|...|++++|...+
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA--IAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 7544332 1256788899999999999999999999987 4331 237888899999999999999999
Q ss_pred HHHHHC
Q 003122 781 QWMEDA 786 (846)
Q Consensus 781 ~~~~~~ 786 (846)
+++.+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=158.18 Aligned_cols=214 Identities=12% Similarity=0.006 Sum_probs=175.8
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 563 YSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI-AEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFL 641 (846)
Q Consensus 563 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (846)
+++++..+++.... .+.+...+..++.+|...|++ ++|+..|+++++.. +.+...|..++.+|...|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666666665554 245777888888888888888 88888888888753 2347888888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 003122 642 EMETNNIEPDSIACSALMRAFNKG---------GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL--------RDWK 704 (846)
Q Consensus 642 ~~~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 704 (846)
++++ +.|+..++..+..+|... |++++|+..|+++++..+. +...+..++.+|... |+++
T Consensus 162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8887 567777888888888888 8899999999999887765 678888888888888 8899
Q ss_pred HHHHHHHhhccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 705 TTIDLIKQMEPSFHV--VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
+|+..++++....|. .+..+|..++.+|...|++++|.+.|+++++ +.|+ ..++..++.++...|++++|++.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998887772 2778899999999999999999999999999 8895 5588899999999999999987665
Q ss_pred HH
Q 003122 782 WM 783 (846)
Q Consensus 782 ~~ 783 (846)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-14 Score=142.98 Aligned_cols=245 Identities=11% Similarity=-0.051 Sum_probs=191.6
Q ss_pred HhcCCHhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 558 CRLSRYSEALGFLDEMMDLKI---PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWE 634 (846)
Q Consensus 558 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (846)
...|++++|+..++++++... +.+..++..++.++...|++++|...|+++.... +.+..+|..++..|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345789999999999998632 2245778899999999999999999999999864 346899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 635 KACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 635 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
+|+..|+++++.. +.+..++..++.+|.+.|++++|+..++++++..+. ..........+...|++++|+..+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999842 335788999999999999999999999999986654 3333444455677899999999998877
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 715 PSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-----FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 715 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
...|. +...+ .++..+...++.++|...++++++ ..|+ ..+|..++.+|...|++++|+..++++.+ +.
T Consensus 172 ~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~ 245 (275)
T 1xnf_A 172 EKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADAT--DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NN 245 (275)
T ss_dssp HHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC
T ss_pred hcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhc--ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CC
Confidence 66665 33334 477788888999999999999988 6663 46889999999999999999999999987 44
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHH
Q 003122 790 PSYGMFRDIVSFAQTRGGAEYAAII 814 (846)
Q Consensus 790 p~~~~~~~l~~~~~~~~~~~~a~~~ 814 (846)
|+.. ......+...++.++|...
T Consensus 246 p~~~--~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 246 VHNF--VEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp CTTC--HHHHHHHHHHHHHHHC---
T ss_pred chhH--HHHHHHHHHHHHHHhhHHH
Confidence 5332 1223334444444444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=155.34 Aligned_cols=274 Identities=11% Similarity=-0.001 Sum_probs=217.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 003122 549 TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTN----QVYSSVISAYSKQGLIAEAESMFNMMKMS----GCSP-DVIT 619 (846)
Q Consensus 549 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~ 619 (846)
.+..+...+...|++++|+..++++++.. +.+. .++..++..|...|++++|+..+++++.. +..| ....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 45566778899999999999999999864 3343 47888999999999999999999988762 1112 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETN----NIEPD-SIACSALMRAFNKGGQ-----------------PSKVLLVAEF 677 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 677 (846)
+..++..|...|++++|...++++.+. +-.+. ..++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 889999999999999999999998762 11222 4578889999999999 9999999998
Q ss_pred HHHCC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-----chhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 678 MREQD----I-TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-----SIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 678 ~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
+++.. . ......+..++.++...|++++|+..++++....+.. ...++..++.+|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 87531 1 1123477889999999999999999999876543321 233788999999999999999999999
Q ss_pred HHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCcchHHHHH
Q 003122 748 IVSSGAEAN-------FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PS----YGMFRDIVSFAQTRGGAEYAAIIQ 815 (846)
Q Consensus 748 ~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~ 815 (846)
+++ +.|+ ..++..++.+|...|++++|+..++++.+..-. ++ ...+..++..+...|+.++|...+
T Consensus 289 al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 289 TLA--LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHH--HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 988 5442 358889999999999999999999998763111 11 236777889999999999999999
Q ss_pred HHHHHHhhcc
Q 003122 816 ERIESLRMKS 825 (846)
Q Consensus 816 ~~l~~l~~~~ 825 (846)
++..++.+++
T Consensus 367 ~~al~~~~~~ 376 (411)
T 4a1s_A 367 EQHLQLAXXX 376 (411)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHHHHhhc
Confidence 9988876554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-14 Score=152.11 Aligned_cols=279 Identities=10% Similarity=0.008 Sum_probs=219.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 003122 544 MPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLT----NQVYSSVISAYSKQGLIAEAESMFNMMKMS----GCSP 615 (846)
Q Consensus 544 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p 615 (846)
......+......+...|++++|+..++++++.. +.+ ..++..++..|...|++++|...++++... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3456667778888999999999999999999864 334 357888999999999999999999987652 2112
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCC--------------------hh
Q 003122 616 D-VITYTAMLHAYNTAEDWEKACALFLEMETNN-IEPD----SIACSALMRAFNKGGQ--------------------PS 669 (846)
Q Consensus 616 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~----~~~~~~l~~~~~~~g~--------------------~~ 669 (846)
. ..++..++..|...|++++|+..++++.+.. -.++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2 5678889999999999999999999987621 0112 4478888999999999 99
Q ss_pred HHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc-----cchhhHHHHHHHHHhcCCHH
Q 003122 670 KVLLVAEFMREQ----DIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV-----VSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 670 ~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~ 739 (846)
+|+..++++++. +.. .....+..++.++...|++++|+..++++....+. ....++..++.+|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999988753 111 12346788899999999999999999987544322 12347899999999999999
Q ss_pred HHHHHHHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCC
Q 003122 740 SMMKLFFKIVSSGAEAN-------FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PS----YGMFRDIVSFAQTRGG 807 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~~~ 807 (846)
+|...++++++ +.|+ ..++..++.+|...|++++|+..++++.+.... ++ ...+..++..+...|+
T Consensus 245 ~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 245 TASEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH--HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987 4442 448889999999999999999999998763211 12 3367788899999999
Q ss_pred cchHHHHHHHHHHHhhcc
Q 003122 808 AEYAAIIQERIESLRMKS 825 (846)
Q Consensus 808 ~~~a~~~~~~l~~l~~~~ 825 (846)
.++|...+++..++.+..
T Consensus 323 ~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999888876554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=129.97 Aligned_cols=175 Identities=11% Similarity=0.048 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALM 659 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 659 (846)
.+..+|..++..|...|++++|+..|++.++.. +-+..+|..++.+|.+.|++++|+..++++.... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 467788999999999999999999999998863 3358889999999999999999999999998742 33467788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 003122 660 RAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 739 (846)
..+...++++.|...++++.+..+. +...+..++.++...|++++|++.++++...+|. +..+|..++.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 8899999999999999999987665 7788889999999999999999999999888887 7889999999999999999
Q ss_pred HHHHHHHHHHhcCCCcCHHHH
Q 003122 740 SMMKLFFKIVSSGAEANFNTY 760 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~~~~~ 760 (846)
+|++.|+++++ +.|+...|
T Consensus 159 ~A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHHh--CCccCHHH
Confidence 99999999999 88876433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.7e-11 Score=132.56 Aligned_cols=471 Identities=9% Similarity=0.027 Sum_probs=276.4
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 003122 249 ALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQ---YDKAIDLFHS 325 (846)
Q Consensus 249 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 325 (846)
.+..|++.+..+. -|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.|+ ++.+..+|++
T Consensus 51 ~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444454444433 37777777777777777777777777777765 34455666666776667777 7777777777
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHc-CC-CCC-HHHHHHHHHHHH---------hc
Q 003122 326 MREKRSECLPDIVTFTSIIHLYSVNGQI--------ENCKGVFNTMLAE-GL-KPN-IVSYNALMAAYA---------SH 385 (846)
Q Consensus 326 ~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-g~-~p~-~~~~~~li~~~~---------~~ 385 (846)
.+...+. .|++..|...+....+.++. +.+.++|+.++.. |. .++ ...|...+.... ..
T Consensus 129 al~~~~~-~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 129 CLSKELG-NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HTCSSSC-CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHhcCC-CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 7654321 25666676666655444432 2233555555442 44 333 345555544332 12
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 003122 386 GMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVF 465 (846)
Q Consensus 386 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (846)
++++.+..+|++++......-..+|...... .+.-+...+.+++.+ ...+++.|...+
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~f-e~~~~~~~a~~~~~e---------------------~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQW-EQDVNQLTARRHIGE---------------------LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHH-HHHHCTTTHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HHhcCcchHHHHHHH---------------------hhHHHHHHHHHH
Confidence 3345555556555532111001111111110 000000001111110 011223333333
Q ss_pred HHHHHC--CCC---CCH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC-------CHHHH
Q 003122 466 REMEQD--GIE---PNI-VSICTLLAACGRCG-RKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVG-------EYEKA 531 (846)
Q Consensus 466 ~~~~~~--g~~---~~~-~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A 531 (846)
.++... ++. |.. .+.. ....-..+ .... ....|...+..--..+ ..+.+
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~---------------ql~lW~~yi~fEk~~~~~l~~~~~~~Rv 328 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQ---------------QLLIWLEWIRWESDNKLELSDDLHKARM 328 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHH---------------HHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHhHhhccccccccch--hccCCCCchhHHH---------------HHHHHHHHHHHHHhCCccccchhhHHHH
Confidence 332211 110 000 0000 00000000 0000 0123444443332222 12345
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 532 IALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEAL-GFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKM 610 (846)
Q Consensus 532 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (846)
..+|++.+... +-+...|...+..+...|+.++|. .+|+.++.. .|.+...|...+....+.|++++|..+|+.++.
T Consensus 329 ~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66787777652 346777888888888889999996 999999875 467777888888999999999999999999886
Q ss_pred cC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CC
Q 003122 611 SG---------CSPD------------VITYTAMLHAYNTAEDWEKACALFLEMETN-NIEPDSIACSALMRAFNKG-GQ 667 (846)
Q Consensus 611 ~~---------~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~-g~ 667 (846)
.. -.|+ ...|...+....+.|+.+.|..+|.++++. + ......|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCC
Confidence 31 0131 346888888888899999999999999985 2 12233444443333444 45
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV--VSIGLLNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 745 (846)
.+.|..+|+.+++.-+. +...+...++.....|+.+.|..+|+++....+. ....+|...+..-.+.|+.+.+..+.
T Consensus 486 ~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999986443 6677778888888899999999999999877663 35678999999999999999999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHH
Q 003122 746 FKIVSSGAEANFNTYSILLKNL 767 (846)
Q Consensus 746 ~~~~~~g~~p~~~~~~~l~~~~ 767 (846)
+++.+ ..|+......+.+-|
T Consensus 565 ~R~~~--~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 565 KRFFE--KFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHH--HSTTCCHHHHHHHHT
T ss_pred HHHHH--hCCCCcHHHHHHHHh
Confidence 99999 888655444444433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-14 Score=146.35 Aligned_cols=268 Identities=13% Similarity=0.039 Sum_probs=174.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----C-CCCCHHHH
Q 003122 515 YNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD----SVTYTVLISSCCRLSRYSEALGFLDEMMDL----K-IPLTNQVY 585 (846)
Q Consensus 515 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~ 585 (846)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...++++++. + .+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4445566777788888888887777653 222 245666777777778888888777776542 1 11224456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 003122 586 SSVISAYSKQGLIAEAESMFNMMKMSG-CSPD----VITYTAMLHAYNTAED--------------------WEKACALF 640 (846)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 640 (846)
..++..|...|++++|...+++..... -.++ ..++..++..|...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 677777888888888888877766521 0112 3466777777777777 78888777
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 641 LEMETN----NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDIT-FS----DSIFFEMVLACSLLRDWKTTIDLI 710 (846)
Q Consensus 641 ~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~ 710 (846)
++.... +..+. ..++..+...+...|++++|+..++++++.... .+ ...+..++.++...|++++|+..+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776541 11111 335667777788888888888888877753111 01 225666777777777777777777
Q ss_pred HhhccCCCc-----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHH
Q 003122 711 KQMEPSFHV-----VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-------FNTYSILLKNLLAAGNWRKYIE 778 (846)
Q Consensus 711 ~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 778 (846)
+++....+. ....++..++..|...|++++|...++++++ +.+. ..++..++.+|...|++++|..
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 765433221 1245667777778888888888888887776 3321 2366677777888888888888
Q ss_pred HHHHHHH
Q 003122 779 VLQWMED 785 (846)
Q Consensus 779 ~~~~~~~ 785 (846)
.++++.+
T Consensus 325 ~~~~a~~ 331 (338)
T 3ro2_A 325 FAEKHLE 331 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-14 Score=145.42 Aligned_cols=274 Identities=11% Similarity=0.010 Sum_probs=212.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHH
Q 003122 549 TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLT----NQVYSSVISAYSKQGLIAEAESMFNMMKMS----GCSPD-VIT 619 (846)
Q Consensus 549 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~ 619 (846)
.+......+...|++++|+..++++++.. +.+ ..++..++..|...|++++|...++++... +..+. ..+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34556677889999999999999999864 334 367888999999999999999999987652 11122 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCC--------------------hhHHHHH
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETNN-IEPD----SIACSALMRAFNKGGQ--------------------PSKVLLV 674 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~ 674 (846)
+..++..|...|++++|...++++.+.. -.++ ..++..+...+...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 8889999999999999999999987621 0122 3478888999999999 9999999
Q ss_pred HHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc-----cchhhHHHHHHHHHhcCCHHHHHHH
Q 003122 675 AEFMREQ----DI-TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV-----VSIGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 675 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
++++++. +. ......+..++.++...|++++|+..++++....+. ....++..++..+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9888752 11 112346788899999999999999999987543222 1244788999999999999999999
Q ss_pred HHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCcchHH
Q 003122 745 FFKIVSSGAEAN-------FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PS----YGMFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 745 ~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~ 812 (846)
++++++ +.|+ ..++..++.+|...|++++|+..++++.+.... .+ ...+..++..+...|+.++|.
T Consensus 246 ~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 246 YKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHH--HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999987 4432 447888999999999999999999998763111 11 225677889999999999999
Q ss_pred HHHHHHHHHhhcc
Q 003122 813 IIQERIESLRMKS 825 (846)
Q Consensus 813 ~~~~~l~~l~~~~ 825 (846)
..+++..++.++.
T Consensus 324 ~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 324 HFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-13 Score=141.64 Aligned_cols=234 Identities=10% Similarity=0.006 Sum_probs=179.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHHHH
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSG-CSPD----VITYTAMLHAYNTAEDWEKACALFLEMETN--NI---EP-DSIACS 656 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~---~p-~~~~~~ 656 (846)
.+..+...|++++|+..|+++...- -.++ ..++..++..|...|++++|+..+++..+. .. .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5667788899999999999887630 0122 467888888999999999999999988762 11 11 134778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHhhcc-----CC-CccchhhH
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITF-S----DSIFFEMVLACSLLRDWKTTIDLIKQMEP-----SF-HVVSIGLL 725 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~~~~~ 725 (846)
.++.+|...|++++|+..++++++..... + ..++..++.+|...|++++|+..++++.. .. |. ...++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS-LPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG-HHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh-HHHHH
Confidence 88889999999999999999988632211 1 23678899999999999999999998865 44 33 57789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----cC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHhH
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAE-----AN-FNTYSILLKNLLAAGN---WRKYIEVLQWMEDAGIQPS-YGMF 795 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-----p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~ 795 (846)
..++.+|...|++++|...++++++ +. |. ...+..++..|...|+ +++|+.++++. +..|+ ...+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMA--YSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 9999999999999999999999987 43 32 2245667888999999 77787777765 23333 2356
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhhccCC
Q 003122 796 RDIVSFAQTRGGAEYAAIIQERIESLRMKSGD 827 (846)
Q Consensus 796 ~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~~ 827 (846)
..++..+...|++++|...+++..++.+++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 77889999999999999999999999888765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-13 Score=142.78 Aligned_cols=230 Identities=9% Similarity=-0.038 Sum_probs=167.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCC--CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---C-CHHHHH
Q 003122 553 LISSCCRLSRYSEALGFLDEMMDLK--IPL---TNQVYSSVISAYSKQGLIAEAESMFNMMKMS--GCS---P-DVITYT 621 (846)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p-~~~~~~ 621 (846)
....+...|++++|...++++.+.- .+. ...++..++.+|...|++++|...+++.+.. ... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4555677788888888888887531 111 2356777888888888888888888887752 111 1 145778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETNNI-EPD----SIACSALMRAFNKGGQPSKVLLVAEFMRE-----QDITFSDSIFF 691 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 691 (846)
.++..|...|++++|+..|+++++..- .++ ..++..++.+|...|++++|+..++++++ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888888889999999998888875210 112 24777888889999999999999998887 22122456778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCC----CccchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcC-HHHHHHH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSF----HVVSIGLLNQLLHLLGKSGR---IESMMKLFFKIVSSGAEAN-FNTYSIL 763 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 763 (846)
.++.++...|++++|+..++++.... .......+..++..+...|+ +++|...+++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 88889999999999999888875432 11123336778899999998 77777777776 24554 3478889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+..|...|++++|...++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=154.98 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVL 695 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 695 (846)
..+|+.|+..|.+.|++++|++.|+++++ +.|+ ..++..++.+|.+.|++++|+..|+++++.++. +...+..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 67888889999999999999999999888 4565 678888999999999999999999999987766 6788889999
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHH
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 774 (846)
++...|++++|++.++++.+.+|. +..+|+.++.+|...|++++|++.|+++++ +.|+ ..+|..|+.+|...|+|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998888887 778999999999999999999999999999 8995 568999999999999999
Q ss_pred HHHHHHHHHHH
Q 003122 775 KYIEVLQWMED 785 (846)
Q Consensus 775 ~A~~~~~~~~~ 785 (846)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988866
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-12 Score=129.68 Aligned_cols=233 Identities=11% Similarity=0.087 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhc----CCH----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHH
Q 003122 548 VTYTVLISSCCRL----SRY----SEALGFLDEMMDLKIPLTNQVYSSVISAYSK-------QGLI-------AEAESMF 605 (846)
Q Consensus 548 ~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~ 605 (846)
..|...+....+. ++. ++|...|++++... |.+...|..++..+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 3455565544332 233 68888999998863 6788888888887763 5775 8999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003122 606 NMMKMSGCSP-DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SI-ACSALMRAFNKGGQPSKVLLVAEFMREQD 682 (846)
Q Consensus 606 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (846)
++.+.. +.| +...|..++..+...|++++|..+|+++++ +.|+ .. +|..++..+.+.|++++|+.+|+++++.+
T Consensus 88 ~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 88 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999873 134 467899999999999999999999999998 5564 33 78888888999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcC--HH
Q 003122 683 ITFSDSIFFEMVLACS-LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG-AEAN--FN 758 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~ 758 (846)
+. +...|...+.... ..|++++|+.+++++....|. +..+|..++..+.+.|++++|+.+|+++++.. +.|+ ..
T Consensus 165 p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 RT-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp TC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 54 4555554444432 369999999999998887777 77889999999999999999999999999842 3553 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 759 TYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.|..++..+.+.|++++|..+++++.+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888899999999999998874
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=148.45 Aligned_cols=210 Identities=9% Similarity=-0.046 Sum_probs=182.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDW-EKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLV 674 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 674 (846)
.+++++..++...... +.+...+..++..|...|++ ++|++.|+++++. .|+ ..+|..++.+|.+.|++++|+..
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4677777887766542 34688999999999999999 9999999999984 454 78999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc--------CC
Q 003122 675 AEFMREQDITFSDSIFFEMVLACSLL---------RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS--------GR 737 (846)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 737 (846)
|+++++.++ +...+..++.++... |++++|+..++++....|. +..+|..++.+|... |+
T Consensus 160 ~~~al~~~p--~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHCK--NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhCC--CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 999999664 578899999999999 9999999999999988888 788999999999999 99
Q ss_pred HHHHHHHHHHHHhcCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCcchHH
Q 003122 738 IESMMKLFFKIVSSGAEA----NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~ 812 (846)
+++|++.|+++++ +.| +...|..++.+|...|++++|+..|+++.+ +.|+ ...+..+...+...++.++|.
T Consensus 237 ~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 237 SQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 888 456999999999999999999999999988 4564 446777778888888777777
Q ss_pred HHHH
Q 003122 813 IIQE 816 (846)
Q Consensus 813 ~~~~ 816 (846)
..++
T Consensus 313 ~~~~ 316 (474)
T 4abn_A 313 ESKG 316 (474)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 6553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-12 Score=129.51 Aligned_cols=222 Identities=10% Similarity=0.004 Sum_probs=179.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-------hcCCH-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 529 EKAIALYKCMKKRKVMPDSVTYTVLISSCC-------RLSRY-------SEALGFLDEMMDLKIPLTNQVYSSVISAYSK 594 (846)
Q Consensus 529 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 594 (846)
++|+..|++.+... +.+...|..++..+. ..|++ ++|..+|+++++.-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888887753 346667777776665 35775 8999999999983235567789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHH
Q 003122 595 QGLIAEAESMFNMMKMSGCSPD-VI-TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFN-KGGQPSKV 671 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A 671 (846)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999984 454 43 89999999999999999999999999842 234445554444332 37999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC---CCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS---FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKI 748 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 748 (846)
..+|+++++..+. +...+..++..+...|+.++|+.+++++... .|.....+|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999987665 7888999999999999999999999999875 33336778999999999999999999999999
Q ss_pred HhcCCCcCH
Q 003122 749 VSSGAEANF 757 (846)
Q Consensus 749 ~~~g~~p~~ 757 (846)
++ ..|+.
T Consensus 268 ~~--~~p~~ 274 (308)
T 2ond_A 268 FT--AFREE 274 (308)
T ss_dssp HH--HTTTT
T ss_pred HH--Hcccc
Confidence 99 77853
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=143.01 Aligned_cols=247 Identities=12% Similarity=0.091 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC------C
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKR-------KVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL------K 577 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 577 (846)
...++..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666777777777777777666552 11222344555666666666666666666666542 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 003122 578 -IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS------GCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETN--- 646 (846)
Q Consensus 578 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 646 (846)
.+....++..++..|...|++++|...|+++.+. +..|+ ...+..++..|...|++++|+.+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1222344555555666666666666666655542 11111 344555555555556666666655555542
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc---
Q 003122 647 ---NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV--- 719 (846)
Q Consensus 647 ---g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 719 (846)
+..|+ ..++..++.+|...|++++|+..++++++..+. ..+ + ...+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~----------~-------------~~~~~~~~ 239 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE---REF----------G-------------SVDDENKP 239 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HHH----------C-------------------CC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hcC----------C-------------CCCcchHH
Confidence 11221 234445555555555555555555555542100 000 0 00000
Q ss_pred --cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 720 --VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 720 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.....+..++..+...+.+.+|...++++.. ..|+ ..++..++.+|.+.|++++|+..++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0112223334444455666667777777776 5663 44777888888888888888888887765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=142.98 Aligned_cols=256 Identities=15% Similarity=0.089 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C
Q 003122 476 NIVSICTLLAACGRCGRKVNIDAVLLAAEMR-------DIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR------K 542 (846)
Q Consensus 476 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 542 (846)
+..++..+...+...|++++|...+..+... ..+....++..+...|...|++++|+..+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888889999999999999999998873 33445678899999999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 003122 543 VMP-DSVTYTVLISSCCRLSRYSEALGFLDEMMDL------K-IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS--- 611 (846)
Q Consensus 543 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 611 (846)
..| ...++..+...+...|++++|...++++++. + .+....++..++..|...|++++|+..|+++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122 3557888899999999999999999999864 2 1234467888999999999999999999999874
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 003122 612 ---GCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD 687 (846)
Q Consensus 612 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (846)
+..|+ ..++..++.+|...|++++|...++++.+. .++.. +..+ -..... ... ..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~-~~~~---~~~~~~---~~~------------~~ 244 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHERE-FGSV---DDENKP---IWM------------HA 244 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHHH-HC---------CC---HHH------------HH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhc-CCCC---CcchHH---HHH------------HH
Confidence 21232 567889999999999999999999999872 11100 0000 000000 000 01
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
..+...+..+...+.+.++...++......|. ...++..++.+|...|++++|.+.|+++++ +.|
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~~ 309 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR--SRK 309 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHC
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--Hhh
Confidence 11112222333444555555666665555444 567788889999999999999999999887 544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-12 Score=126.35 Aligned_cols=200 Identities=10% Similarity=-0.010 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSAL 658 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 658 (846)
.+...+..++..+...|++++|+..|++.++....++...+..++.++...|++++|+..|++.++ ..|+ ..++..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 456777778888888888888888888888764226677777788888888888888888888887 4454 5577788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-chhhHHHHHH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITFSD-------SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-SIGLLNQLLH 730 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 730 (846)
+.+|...|++++|+..++++++..+. +. ..+..++.++...|++++|+..++++....|.. ...+|..++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 88888888888888888888876554 44 446777777777788888888888777666641 2456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 731 LLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 731 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
+|...| ...++++.. +.+ +...|.. ......|.+++|+..++++.+ +.|+..
T Consensus 162 ~~~~~~-----~~~~~~a~~--~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATP--LASSNKEKYAS--EKAKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHGG--GTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHH-----HHHHHHHHh--cccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 775443 344555555 333 2223322 224445667888888888887 456543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=148.74 Aligned_cols=171 Identities=8% Similarity=-0.002 Sum_probs=156.8
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHH
Q 003122 649 EPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQ 727 (846)
Q Consensus 649 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 727 (846)
.|+ ..+++.|+.+|.+.|++++|+..|+++++..+. +...+..++.+|...|++++|++.++++.+.+|. ...+|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 354 668999999999999999999999999998776 7889999999999999999999999999999988 7899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhc
Q 003122 728 LLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTR 805 (846)
Q Consensus 728 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 805 (846)
++.+|...|++++|++.|+++++ +.|+ ..+|..++.+|.+.|++++|++.|+++++ +.|+ ...+.+++..+...
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhc
Confidence 99999999999999999999999 9995 56999999999999999999999999998 5675 56788999999999
Q ss_pred CCcchHHHHHHHHHHHhhcc
Q 003122 806 GGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 806 ~~~~~a~~~~~~l~~l~~~~ 825 (846)
++.++|.+.++++.++..+.
T Consensus 159 g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TCCTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhChhH
Confidence 99999999999999987654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.5e-12 Score=132.77 Aligned_cols=236 Identities=10% Similarity=-0.010 Sum_probs=165.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-CHHHH
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKMSG-CSPD----VITYTAMLHAYNTAEDWEKACALFLEMETNN--I---EP-DSIAC 655 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~---~p-~~~~~ 655 (846)
..+..+...|++++|+..|+++...- -.++ ..++..++..|...|++++|+..++++.+.. . .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 44556677888888888888877531 0122 4567778888888888888888888877520 1 11 13467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc-----CCCccchhhH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDI--T---FSDSIFFEMVLACSLLRDWKTTIDLIKQMEP-----SFHVVSIGLL 725 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 725 (846)
..++.+|...|++++|++.++++++... . ....++..++.+|...|++++|+..++++.. ..|.. ..++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHH
Confidence 7788888888888888888888876311 1 1134567788888888888888888888776 56653 7788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHhHHH
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGA---EANF-NTYSILLKNLLAAGN---WRKYIEVLQWMEDAGIQPS-YGMFRD 797 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~ 797 (846)
..++.+|.+.|++++|...++++++... .|.. ..+..+...|...|+ +.+|+..+++. +..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 8888888888999999999988887321 2222 245555666777787 77777777652 22222 235567
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHhhccC
Q 003122 798 IVSFAQTRGGAEYAAIIQERIESLRMKSG 826 (846)
Q Consensus 798 l~~~~~~~~~~~~a~~~~~~l~~l~~~~~ 826 (846)
++..+...|++++|...+++..++.+++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 78888888888888888888888776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-11 Score=131.84 Aligned_cols=229 Identities=10% Similarity=0.014 Sum_probs=164.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---CC-CHHHHH
Q 003122 553 LISSCCRLSRYSEALGFLDEMMDLKI-PL----TNQVYSSVISAYSKQGLIAEAESMFNMMKMS--GC---SP-DVITYT 621 (846)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~p-~~~~~~ 621 (846)
....+...|++++|+..++++.+... .+ ...++..++.+|...|+++.|...+++.... .. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456677888888888888775311 11 2346777888888888888888888887652 11 11 145677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETN----NIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMRE-----QDITFSDSIFF 691 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 691 (846)
.++.+|...|++++|+..|++.++. +..+ ...++..++.+|...|++++|+..++++++ ..+. ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 8888888888999998888888752 1111 134677788888889999999999988887 4444 366778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCC----ccchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcC-HHHHHHH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFH----VVSIGLLNQLLHLLGKSGR---IESMMKLFFKIVSSGAEAN-FNTYSIL 763 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 763 (846)
.++.++...|++++|+..++++....+ ......+..+...+...|+ +++|...+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 888889999999999998888754321 1133456777777888888 77787777762 24454 3377788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+..|.+.|++++|...++++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998865
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-10 Score=124.33 Aligned_cols=270 Identities=10% Similarity=-0.057 Sum_probs=193.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCH----HHHH
Q 003122 516 NSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV----TYTVLISSCCRLSRYSEALGFLDEMMDLKI-PLTN----QVYS 586 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~ 586 (846)
......+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667889999999988877754222322 455666778888999999999988775310 1122 3356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHH
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKMS----GCS--PD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIE--P--DSIAC 655 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p--~~~~~ 655 (846)
.+...+...|++++|...+++.+.. +.. |. ...+..+...+...|++++|...+++..+..-. + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7788889999999999999888752 221 22 456677888899999999999999998863211 1 24567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHhhccCCCcc---chhhHH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFS-DSIFF-----EMVLACSLLRDWKTTIDLIKQMEPSFHVV---SIGLLN 726 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 726 (846)
..+...+...|++++|...++++......+. ...+. ..+.++...|++++|..++++.....+.. ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7888889999999999999999886422211 11221 23345778999999999999987655431 133567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSS----GAEANF-NTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.++.++...|++++|...++++++. |..++. ..+..++.+|...|++++|...++++.+
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8899999999999999999998762 111122 2677788889999999999999998865
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-11 Score=118.67 Aligned_cols=207 Identities=11% Similarity=0.042 Sum_probs=162.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003122 545 PDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAM 623 (846)
Q Consensus 545 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 623 (846)
.|...+......+...|++++|+..|+++++...+++...+..++.++...|++++|+..|++.++. .|+ ...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4667888899999999999999999999998764378888888999999999999999999999985 454 7889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPD-S-------IACSALMRAFNKGGQPSKVLLVAEFMREQDITF-SDSIFFEMV 694 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~ 694 (846)
+.+|...|++++|+..+++.++ ..|+ . .+|..+...+...|++++|++.|+++++.++.. +...+..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 9999999999999999999998 4454 4 458888899999999999999999999864320 246777888
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHH
Q 003122 695 LACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLK 765 (846)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~ 765 (846)
.++...|+ ..++++....+. ....+.. ......+.+++|+..++++++ +.|+.. +...+..
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~~-~~~~~~~--~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLASS-NKEKYAS--EKAKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTTT-CHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcccC-CHHHHHH--HHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 88865553 444554444333 2223322 234456789999999999999 899544 4444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-11 Score=116.54 Aligned_cols=163 Identities=11% Similarity=0.066 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 618 ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC 697 (846)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 697 (846)
..|..++..+...|++++|+..++++.+. .+.+..++..++..+...|++++|...++++++..+. +...+..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34555566666666666666666666543 1224556666666666667777777777666665433 556666666667
Q ss_pred HhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHH
Q 003122 698 SLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 776 (846)
...|++++|++.++++....|. +..++..++.++...|++++|...++++++ ..| +..++..++.+|...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALG--LRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777766655555 556677777777788888888888888877 566 455777777778888888888
Q ss_pred HHHHHHHHH
Q 003122 777 IEVLQWMED 785 (846)
Q Consensus 777 ~~~~~~~~~ 785 (846)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-11 Score=114.32 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAF 662 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 662 (846)
..+..++..+...|++++|...++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666667777777777777666542 2346667777777777777777777777776631 23456666777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
...|++++|...++++.+..+. +...+..++.++...|++++|+..++++....|. +..++..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777765543 5666777777777777777777777777666665 5677778888888888888888
Q ss_pred HHHHHHHhcCCCcC
Q 003122 743 KLFFKIVSSGAEAN 756 (846)
Q Consensus 743 ~~~~~~~~~g~~p~ 756 (846)
..++++++ ..|+
T Consensus 165 ~~~~~~~~--~~~~ 176 (186)
T 3as5_A 165 PHFKKANE--LDEG 176 (186)
T ss_dssp HHHHHHHH--HHHC
T ss_pred HHHHHHHH--cCCC
Confidence 88888877 5554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-11 Score=123.35 Aligned_cols=192 Identities=10% Similarity=-0.013 Sum_probs=127.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 003122 591 AYSKQGLIAEAESMFNMMKMS----GCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETN----NIEP-DSIACSALMR 660 (846)
Q Consensus 591 ~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~ 660 (846)
.|...|++++|...|++.... |-.++ ..+|+.++.+|...|++++|+..|++.++. |-.. -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666665542 21111 356677777777777777777777777652 1000 0346777788
Q ss_pred HHHhc-CChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccch------hhHHHH
Q 003122 661 AFNKG-GQPSKVLLVAEFMREQDITF-S----DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSI------GLLNQL 728 (846)
Q Consensus 661 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 728 (846)
+|... |++++|+..|+++++..+.. + ..++..++.++...|++++|+..++++....|.... .+|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88888888888888643221 1 345777888888888888888888888766554322 257788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 003122 729 LHLLGKSGRIESMMKLFFKIVSSGAEANFN------TYSILLKNLL--AAGNWRKYIEVLQWME 784 (846)
Q Consensus 729 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~ 784 (846)
+.++...|++++|+..|+++++ +.|+.. .+..++.+|. ..+++++|+..|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 8889999999999999999998 888543 2344555554 4577888988887763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-11 Score=116.92 Aligned_cols=131 Identities=11% Similarity=-0.069 Sum_probs=97.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG- 736 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 736 (846)
++.+|.+.|++++|+..|+++++.++. +...+..++.++...|++++|+..++++...+|. +..+|..++.+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 777888888888888888888887665 6778888888888888888888888888887777 6778888888876665
Q ss_pred -CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 003122 737 -RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGM 794 (846)
Q Consensus 737 -~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 794 (846)
+.+.+...+++++. ..|....+..++.++...|++++|+..|+++++ +.|+...
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 192 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHH
Confidence 44556666666654 444444666677778888888888888888876 5676543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-10 Score=120.30 Aligned_cols=271 Identities=7% Similarity=-0.037 Sum_probs=199.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHH
Q 003122 552 VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQ----VYSSVISAYSKQGLIAEAESMFNMMKMSGC-SPD----VITYTA 622 (846)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~ 622 (846)
.....+...|++++|...+++.+......+.. ++..+...+...|++++|...+++...... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455678899999999999998864223322 566778889999999999999998876210 122 234677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHH
Q 003122 623 MLHAYNTAEDWEKACALFLEMETN----NIE--PD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITF----SDSIFF 691 (846)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~----g~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~ 691 (846)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++.++..... ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 888899999999999999998762 222 32 3466778889999999999999999998744321 234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCc--cchhhHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-----HHHH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHV--VSIGLLN----QLLHLLGKSGRIESMMKLFFKIVSSGAEAN-----FNTY 760 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~ 760 (846)
.++.++...|++++|...+++.....+. ....... ..+..+...|++++|...+++++. ..|. ...+
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK--PEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC--CCCTTCGGGHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC--CCCCcchhhHHHH
Confidence 8889999999999999999987543211 1111111 334557799999999999999987 4442 2256
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 003122 761 SILLKNLLAAGNWRKYIEVLQWMEDAG----IQPSY-GMFRDIVSFAQTRGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~ 824 (846)
..++.++...|++++|...++++.+.. ..++. ..+..+...+...|+.++|...+++..++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 788889999999999999999886531 11122 24556677888899999999999988877654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-11 Score=123.70 Aligned_cols=201 Identities=10% Similarity=0.009 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMS------GCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETN------NIE 649 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~ 649 (846)
.++..++..|...|++++|+..+++++.. +..|. ..++..++..|...|++++|+..++++++. ...
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555544432 11111 334555555555555555555555555431 001
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhccC-----
Q 003122 650 PD-SIACSALMRAFNKGGQPSKVLLVAEFMREQ-----DI-TF-SDSIFFEMVLACSLLRDWKTTIDLIKQMEPS----- 716 (846)
Q Consensus 650 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 716 (846)
|+ ..++..++..|...|++++|+.+++++++. +. .| ....+..++.++...|++++|+..++++...
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 11 334455555555555555555555555543 00 11 1234445555555555555555555544321
Q ss_pred ---CCccchhhHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 717 ---FHVVSIGLLNQLLHLLGKSGR------IESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 717 ---~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.......+|..+...+...+. +.++...++.+.. ..|+ ..++..++.+|...|++++|..+++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 011122333344433333222 2333333322222 2332 33677777788888888888888877764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.8e-11 Score=120.16 Aligned_cols=203 Identities=13% Similarity=0.105 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDL------K-IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS------GC 613 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~ 613 (846)
..++..+...+...|++++|+..++++++. + .+....++..++.+|...|++++|...|+++... ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445666777777777777777777776643 1 1223456777788888888888888888877653 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---
Q 003122 614 SP-DVITYTAMLHAYNTAEDWEKACALFLEMETN------NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQD--- 682 (846)
Q Consensus 614 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 682 (846)
.| ...++..++..|...|++++|...++++.+. +..|+ ..++..++.+|...|++++|+.+++++++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 2567788888888888888888888888763 11332 4577788888888899999988888887631
Q ss_pred ----CC-CCHHHHHHHHHHHHhcC------CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 683 ----IT-FSDSIFFEMVLACSLLR------DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 683 ----~~-~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.. .....+..+...+...+ .+.++...++......+. ...++..++.+|...|++++|...++++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT-VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 12333444444444332 345555556655544444 567889999999999999999999999987
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.4e-11 Score=118.08 Aligned_cols=184 Identities=11% Similarity=0.080 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD---VITYTAMLHAYNTAEDWEKACALFLEMETNNI-EPD-SIA 654 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~-~~~ 654 (846)
.+...+..++..+.+.|++++|+..|++++... +.+ ...+..++.+|.+.|++++|+..|+++++..- .|. ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 344555556666666666666666666666542 112 45566666666666666666666666666210 111 345
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH
Q 003122 655 CSALMRAFNK--------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN 726 (846)
Q Consensus 655 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 726 (846)
+..++.++.. .|++++|+..|+++++..+. +......... +..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 5556666666 66777777777776665443 2211111100 0000000 011234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSILLKNLLAA----------GNWRKYIEVLQWMED 785 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 785 (846)
.++..|...|++++|+..|+++++ ..|+ ...+..++.+|... |++++|+..++++.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 666677777777777777777776 5554 22566666666655 666777777777766
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-10 Score=119.54 Aligned_cols=213 Identities=10% Similarity=-0.025 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL----KIPLT-NQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 601 (846)
++++|...|++. +..|...|++++|...|.++++. +.++. ..+|+.++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 23455667777777777766642 21111 35677778888888888888
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCh
Q 003122 602 ESMFNMMKMSGC-SPD----VITYTAMLHAYNTA-EDWEKACALFLEMETNNIEPD-------SIACSALMRAFNKGGQP 668 (846)
Q Consensus 602 ~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~ 668 (846)
+..|++.+.... ..+ ..+++.++.+|... |++++|+..|++.++. .|+ ..++..++..+.+.|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 888877765210 011 35788888899886 9999999999998862 221 34678889999999999
Q ss_pred hHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccch----hhHHHHHHHHH--hcC
Q 003122 669 SKVLLVAEFMREQDITFSD------SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSI----GLLNQLLHLLG--KSG 736 (846)
Q Consensus 669 ~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~--~~g 736 (846)
++|+..|+++++..+.... ..+..++.++...|++++|+..+++.....|.... ..+..++..+. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999999986654322 15678888999999999999999998877665321 13455666664 457
Q ss_pred CHHHHHHHHHHHHhcCCCcCHH
Q 003122 737 RIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
++++|+..|++++. ++|+..
T Consensus 255 ~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp THHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHHHHHhccCCc--cHHHHH
Confidence 89999999999888 777543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-10 Score=115.73 Aligned_cols=169 Identities=10% Similarity=-0.077 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD----SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE 692 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 692 (846)
...+..++..+.+.|++++|+..|+++++. .|+ ..++..++.+|.+.|++++|+..|+++++..+...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~------ 86 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP------ 86 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc------
Confidence 444445555555555555555555555542 222 33445555555555555555555555555332100
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCcCH-H-----
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK--------SGRIESMMKLFFKIVSSGAEANF-N----- 758 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~~-~----- 758 (846)
....++..++.++.. .|++++|+..|+++++ ..|+. .
T Consensus 87 ---------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 137 (261)
T 3qky_A 87 ---------------------------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT 137 (261)
T ss_dssp ---------------------------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred ---------------------------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH
Confidence 012334444444444 5555555555555555 44422 1
Q ss_pred ------------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhc----------CCcchHH
Q 003122 759 ------------TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS----YGMFRDIVSFAQTR----------GGAEYAA 812 (846)
Q Consensus 759 ------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------~~~~~a~ 812 (846)
.+..++..|.+.|++++|+..++++++. .|+ +..+..++..+... |+.++|.
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~ 215 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAV 215 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHH
Confidence 2377899999999999999999999884 454 23566666666654 7778898
Q ss_pred HHHHHHHHHhhc
Q 003122 813 IIQERIESLRMK 824 (846)
Q Consensus 813 ~~~~~l~~l~~~ 824 (846)
..++++.+..+.
T Consensus 216 ~~~~~~~~~~p~ 227 (261)
T 3qky_A 216 ELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHCCC
Confidence 888887775543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=112.47 Aligned_cols=142 Identities=11% Similarity=-0.020 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
+..+...|++++|+..+++... ..|+ ...+..+...|.+.|++++|++.|+++++.++. +...+..++.++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 3344445555555555555543 2222 233445555555555555555555555555443 44555555555555555
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCcC-HHHHHHHHHHHHhcC
Q 003122 703 WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKL-FFKIVSSGAEAN-FNTYSILLKNLLAAG 771 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~p~-~~~~~~l~~~~~~~g 771 (846)
+++|+..++++...+|. ++.+|..++.+|.+.|++++|.+. ++++++ +.|+ ..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 55555555555544444 444555555555555555444333 355555 5552 334444444444444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-10 Score=109.56 Aligned_cols=136 Identities=14% Similarity=0.003 Sum_probs=107.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 623 MLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
++.+|.+.|++++|+..|++.++ +.| +..++..++.++...|++++|+..|+++++.+|. +...+..++.+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence 88899999999999999999998 445 4778899999999999999999999999998776 7888889998887665
Q ss_pred C--HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q 003122 702 D--WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLK 765 (846)
Q Consensus 702 ~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 765 (846)
+ .+.+...++++... .+....+..++.++...|++++|+..|+++++ +.|+......+..
T Consensus 137 ~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4 44556666666432 22334566778888889999999999999999 9998765555544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-10 Score=107.09 Aligned_cols=176 Identities=14% Similarity=0.006 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 003122 600 EAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGG----QPSKVLLVA 675 (846)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 675 (846)
+|.+.|++..+.| +...+..|...|...+++++|+..|++..+.| +..++..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777643 67777777777777888888888888887754 55667777777766 5 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCc-cchhhHHHHHHHHHh----cCCHHHHHHHHH
Q 003122 676 EFMREQDITFSDSIFFEMVLACSL----LRDWKTTIDLIKQMEPSFHV-VSIGLLNQLLHLLGK----SGRIESMMKLFF 746 (846)
Q Consensus 676 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 746 (846)
+++.+.+ +...+..++.+|.. .+++++|+.++++....++. ..+.++..|+.+|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887755 56777778887776 77888888888888776652 135678889999988 789999999999
Q ss_pred HHHhcCCCcCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 003122 747 KIVSSGAEANFNTYSILLKNLLAA-G-----NWRKYIEVLQWMEDAG 787 (846)
Q Consensus 747 ~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 787 (846)
++.+ ..++..++..|+..|... | ++++|+.+|+++.+.|
T Consensus 154 ~A~~--~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSS--LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHH--TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHH--cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9998 544666888888888764 4 8999999999998876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-10 Score=109.34 Aligned_cols=184 Identities=8% Similarity=-0.080 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCS-PD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS----IA 654 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~ 654 (846)
+...+..++..+.+.|++++|+..|++++..... |. ...+..++.+|.+.|++++|+..|+++++. .|+. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHH
Confidence 4455666777788888888888888888875211 11 356777888888888888888888888873 3432 24
Q ss_pred HHHHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 003122 655 CSALMRAFNK------------------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS 716 (846)
Q Consensus 655 ~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 716 (846)
+..++.++.. .|++++|+..|+++++..|. +.........+. . +...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----~------~~~~---- 145 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----F------LKDR---- 145 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----H------HHHH----
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----H------HHHH----
Confidence 5555555554 34555555555555554333 111111100000 0 0000
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 717 FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF----NTYSILLKNLLAAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 717 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 787 (846)
.......++..|.+.|++++|+..|+++++ ..|+. .++..++.+|.+.|++++|+..++++...+
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 001124677888899999999999999998 77853 368888999999999999999999888753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=7e-11 Score=135.71 Aligned_cols=173 Identities=14% Similarity=-0.020 Sum_probs=85.8
Q ss_pred HhcCCHhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 558 CRLSRYSEALGFLDEMM--------DLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 558 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
...|++++|++.+++++ +. .+.+...+..++.+|...|++++|+..|+++++.. +.+...|..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45556666666666555 22 13344555555555555555555555555555432 2234555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTID 708 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 708 (846)
.|++++|+..|+++++ +.| +...+..+..+|.+.|++++ ++.|+++++.++. +...+..++.++...|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555 233 23445555555555555555 5555555554443 34444444555555555555555
Q ss_pred HHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 709 LIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
.++++...+|. +..+|..++.++...|+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 55544444444 33444444444444333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-09 Score=105.49 Aligned_cols=219 Identities=9% Similarity=0.033 Sum_probs=165.3
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 003122 562 RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG--LIAEAESMFNMMKMSGCSPDVITYTAMLHAY----NTA---ED 632 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~---g~ 632 (846)
..++|+.++++++..+ |.+..+|+.-..++...| ++++++..++.++... +.+..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3457888888888764 556677777777777777 8888888888888753 33466676666555 444 67
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HH
Q 003122 633 WEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPS--KVLLVAEFMREQDITFSDSIFFEMVLACSLLRD------WK 704 (846)
Q Consensus 633 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 704 (846)
+++++.+++++.+.. +-+..+|..-..++.+.|.++ +++++++++++.++. +...|..-..++...|. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 888888888888742 346778888888888888888 888888888887776 77788777777777776 88
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcC-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 705 TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR-IESMMKLFFKIVSSG-AEA-NFNTYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
++++.++++...+|. +..+|+.+..++.+.|+ .+++...+.++++.+ ..| +..++..++.+|.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888888888887 77888888888888886 444556777776621 124 55688888888888899999999998
Q ss_pred HHHH
Q 003122 782 WMED 785 (846)
Q Consensus 782 ~~~~ 785 (846)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=109.66 Aligned_cols=144 Identities=6% Similarity=-0.049 Sum_probs=117.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
|+..+...|++++|+..++++....+. +...+..++.+|...|++++|++.++++...+|. ++.+|..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 455667788999999999999875443 4556778999999999999999999999999988 78999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCC-HHhHHHHHHHHHhcCC
Q 003122 738 IESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEV-LQWMEDAGIQPS-YGMFRDIVSFAQTRGG 807 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~p~-~~~~~~l~~~~~~~~~ 807 (846)
+++|+..|+++++ +.| +..+|..++.+|.+.|++++|.+. ++++.+ +.|+ +..+......+...|+
T Consensus 81 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999 999 466999999999999999887765 588887 5665 4455555555555553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=126.00 Aligned_cols=189 Identities=9% Similarity=-0.006 Sum_probs=140.7
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 523 MNVGEYEKAIALYKCMK--------KRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSK 594 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 594 (846)
...|++++|++.|++.. +.. +.+...+..+...+...|++++|+..++++++.+ +.+...+..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67888888888888887 432 3355677788888888888888888888888764 5677888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 003122 595 QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
.|++++|+..|+++++.. +.+...|..++.+|.+.|++++ +..|+++++ +.| +..+|..+..++.+.|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888888753 2247788888888888888888 888888887 344 46678888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHhhccCCC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRD--------WKTTIDLIKQMEPSFH 718 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~ 718 (846)
.|+++++.++. +...+..++.++...++ +++|.+.+..+....+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~ 607 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEP 607 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTST
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcH
Confidence 88888876554 45667777777755443 5555555555554333
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-10 Score=105.93 Aligned_cols=155 Identities=10% Similarity=-0.025 Sum_probs=72.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 003122 623 MLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA-CSLL 700 (846)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 700 (846)
+...+...|++++|+..|+++++ ..| +...+..+..++...|++++|+..++++.+..+ +...+...+.+ +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 33344444455555555444443 122 233444444444555555555555544444322 22222111111 1111
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HHHHHHHHHHHHhcCCHHHHH
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FNTYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~ 777 (846)
+...+|+..++++....|. +..++..++.++...|++++|+..|+++++ ..|+ ...+..++.+|...|+.++|+
T Consensus 88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILK--VNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222344455555444444 445555566666666666666666666665 5543 235555555666666666666
Q ss_pred HHHHHHH
Q 003122 778 EVLQWME 784 (846)
Q Consensus 778 ~~~~~~~ 784 (846)
..|++++
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=96.27 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
|..++..+...|++++|+.+++++.+.++. +...+..++.++...|++++|+.+++++....|. +..++..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 444555555555555555555555554333 3445555555555556666666666555544444 44556667777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 735 SGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.|++++|.+.++++++ ..| +..++..++.+|...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777776 555 345666777777777777777777777665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.3e-09 Score=103.68 Aligned_cols=218 Identities=8% Similarity=-0.023 Sum_probs=182.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----Hhc-
Q 003122 595 QGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAE--DWEKACALFLEMETNNIEP-DSIACSALMRAF----NKG- 665 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~----~~~- 665 (846)
....++|+.+++.++.. .|+ ...|+.-..++...| +++++++.++.++.. .| +..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhcc
Confidence 34457999999999986 455 788999999998888 999999999999984 44 456777666666 555
Q ss_pred --CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHhhccCCCccchhhHHHHHHHHHhcCC----
Q 003122 666 --GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWK--TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR---- 737 (846)
Q Consensus 666 --g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 737 (846)
+++++++.+++++++.+++ +..+|..-..++...|.++ +++++++++...+|. +..+|+..+.++...|+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 7899999999999998877 8899999999999999998 999999999999988 78899999999998887
Q ss_pred --HHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC-C-CCCHHhHHHHHHHHHhcCCcchH
Q 003122 738 --IESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRK-YIEVLQWMEDAG-I-QPSYGMFRDIVSFAQTRGGAEYA 811 (846)
Q Consensus 738 --~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g-~-~p~~~~~~~l~~~~~~~~~~~~a 811 (846)
++++++.+++++. ..| |..+|+.+...+.+.|+..+ +..+.+++.+.+ . ..++..+.-++..+...|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 9999999999999 899 67799999999999998555 555777665432 1 23556777788888889999999
Q ss_pred HHHHHHHHH
Q 003122 812 AIIQERIES 820 (846)
Q Consensus 812 ~~~~~~l~~ 820 (846)
.++++++.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.3e-10 Score=112.65 Aligned_cols=162 Identities=13% Similarity=0.035 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVL 695 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 695 (846)
...+..+...+...|++++|+..|+++.+ ..| +...+..++.++.+.|++++|+..++++....+. ..........
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHHH
Confidence 34444445555555555555555555554 223 2444555555555555555555555555543331 1112222222
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HHHHHHHHHHHHhcCC
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FNTYSILLKNLLAAGN 772 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~ 772 (846)
.+...++.++|+..++++....|. +..++..++.+|...|++++|++.|.++++ ..|+ ...+..|+.+|...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~--~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLR--XDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cccccccchHHHHHHHHHHHcCC
Confidence 344444555555555555555554 445555666666666666666666666666 5553 2355666666666666
Q ss_pred HHHHHHHHHHHH
Q 003122 773 WRKYIEVLQWME 784 (846)
Q Consensus 773 ~~~A~~~~~~~~ 784 (846)
.++|...+++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666555543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-08 Score=102.03 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=35.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 531 AIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKI-PLTNQVYSSVISAYSKQGLIAEAESMFNMMK 609 (846)
Q Consensus 531 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 609 (846)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 23333333444444445555555555554443321 1233444444444555555555555554444
Q ss_pred H
Q 003122 610 M 610 (846)
Q Consensus 610 ~ 610 (846)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-09 Score=109.00 Aligned_cols=166 Identities=8% Similarity=-0.096 Sum_probs=141.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHH
Q 003122 649 EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQL 728 (846)
Q Consensus 649 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 728 (846)
+.+...+..+...+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. ....+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 334567788888999999999999999999998776 7888999999999999999999999999988885 44444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHh
Q 003122 729 LHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS---YGMFRDIVSFAQT 804 (846)
Q Consensus 729 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~ 804 (846)
+..+...++.++|++.++++++ ..| +...+..++.+|...|++++|+..++++++. .|+ ...+..++..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 5567788899999999999999 899 4669999999999999999999999999984 454 4468888999999
Q ss_pred cCCcchHHHHHHHHHH
Q 003122 805 RGGAEYAAIIQERIES 820 (846)
Q Consensus 805 ~~~~~~a~~~~~~l~~ 820 (846)
.|+.+++...|++...
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 9999988888876543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-08 Score=101.77 Aligned_cols=245 Identities=8% Similarity=0.002 Sum_probs=133.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAE 602 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 602 (846)
.-.|.+..++.-...+.. .........+.+++...|++... ..-.|....+..+...+ ..+ |+
T Consensus 24 fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 346677666663322221 11223333344666666665531 11223333433333332 221 56
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003122 603 SMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQ 681 (846)
Q Consensus 603 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (846)
..|++....+ .++..++..++.++...|++++|++++.+.+..+-.+ +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666666543 3455555566677777777777777777776543212 3455666677777777777777777777664
Q ss_pred CC---CCCHHHHHHHHHH--HHhcC--CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 003122 682 DI---TFSDSIFFEMVLA--CSLLR--DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA- 753 (846)
Q Consensus 682 ~~---~~~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~- 753 (846)
.+ ..+..+...++.+ ....| ++++|..+|+++....|.. ..-..|..++...|++++|.+.++.+.+ .
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~--~~~~lLln~~~~~g~~~eAe~~L~~l~~--~~ 241 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW--KTQLGLLNLHLQQRNIAEAQGIVELLLS--DY 241 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH--HHHHHHHHHHHHHTCHHHHHHHHHHHHS--HH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc--ccHHHHHHHHHHcCCHHHHHHHHHHHHH--hc
Confidence 32 0023444444433 33333 6777777777776555531 1111222266677777777777776655 3
Q ss_pred ---------CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 754 ---------EANF-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 754 ---------~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.|+. .+...++......|+ +|.++++++.+ ..|+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 2533 355566666555665 67777777776 455544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-09 Score=112.86 Aligned_cols=156 Identities=11% Similarity=0.024 Sum_probs=103.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C--CHHHHHHHHH
Q 003122 626 AYNTAEDWEKACALFLEMETN----NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDIT---F--SDSIFFEMVL 695 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~ 695 (846)
.|...|++++|...|.++.+. +-.+. ..+|..++.+|.+.|++++|+..|+++++.... + ...++..++.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666665541 10001 335666677777777777777777777653111 1 1245667777
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCcc-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-------HHHHHHH
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHVV-----SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-------FNTYSIL 763 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l 763 (846)
+|.. |++++|+..++++....+.. ...+++.++.+|...|++++|+..|+++++ +.|+ ...+..+
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS--MYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHcCChhHHHHHHHHH
Confidence 7777 88888888887765433221 246788888889999999999999998887 5441 1256667
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~ 784 (846)
+.++...|++++|+..++++.
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 777888899999999998886
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=101.91 Aligned_cols=160 Identities=11% Similarity=0.081 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH-H
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL-L 732 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 732 (846)
.+..+...+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....| ++..+..++.. +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 3556777889999999999999999987666 788899999999999999999999999988877 44444443333 2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCc
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS---YGMFRDIVSFAQTRGGA 808 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~~~~ 808 (846)
...+...+|+..++++++ ..| +...+..++.+|...|++++|+..++++++. .|+ ...+..++..+...|+.
T Consensus 85 ~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCC
Confidence 233344568999999999 899 4679999999999999999999999999874 454 44788889999999999
Q ss_pred chHHHHHHHHHH
Q 003122 809 EYAAIIQERIES 820 (846)
Q Consensus 809 ~~a~~~~~~l~~ 820 (846)
++|...|++...
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999886543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-09 Score=102.63 Aligned_cols=187 Identities=12% Similarity=0.057 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIP-L-TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-V---IT 619 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~ 619 (846)
+...+..+...+...|++++|+..|+++++.... + ....+..++.+|.+.|++++|+..|+++++.. |+ . ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3455667778899999999999999999985321 1 24678889999999999999999999999863 43 2 35
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 620 YTAMLHAYNT------------------AEDWEKACALFLEMETNNIEPDS-IACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 620 ~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
+..++.++.. .|++++|+..|+++++ ..|+. .++..+.... .+....
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~----------~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLV----------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHH----------HHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHH----------HHHHHH--
Confidence 6666666654 5789999999999998 34553 2222211100 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
......++..|...|++++|+..++++....|... ..++..++.+|.+.|+.++|++.++++.. ..|+
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~--~~~~ 216 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA--NSSN 216 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--CCSC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCC
Confidence 11234677888899999999999999888877632 36788999999999999999999999988 6664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-09 Score=94.04 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
|..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.++. +...+..++.++..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 4445555555555555555555555421 223445555555555566666666666666554433 44555556666666
Q ss_pred cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 700 LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
.|++++|+..++++....|. +..++..++.++...|++++|...++++++ ..|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HSTT
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc--cCCC
Confidence 66666666666665555444 445666777777777777777777777776 4553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-08 Score=97.80 Aligned_cols=176 Identities=9% Similarity=-0.030 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003122 565 EALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE----DWEKACALF 640 (846)
Q Consensus 565 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 640 (846)
+|...|++..+. .+...+..|...|...+++++|+..|++..+.| +...+..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466677777765 366777777888888888888888888887754 66777777777777 6 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003122 641 LEMETNNIEPDSIACSALMRAFNK----GGQPSKVLLVAEFMREQDIT-FSDSIFFEMVLACSL----LRDWKTTIDLIK 711 (846)
Q Consensus 641 ~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 711 (846)
++..+.| +..++..|...|.. .+++++|+.+|+++.+.++. .....+..++.+|.. .+++++|+.+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887644 56677777777776 77888888888888876531 025677788888877 778888888888
Q ss_pred hhccCCCccchhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 003122 712 QMEPSFHVVSIGLLNQLLHLLGKS-G-----RIESMMKLFFKIVSSG 752 (846)
Q Consensus 712 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 752 (846)
+...... +..++..|+.+|... | ++++|...|+++.+.|
T Consensus 154 ~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8866522 334677888888653 3 8999999999988843
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.06 E-value=7.3e-10 Score=99.51 Aligned_cols=103 Identities=5% Similarity=-0.080 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILL 764 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 764 (846)
+...+..++..+...|++++|+..++++...+|. ++.+|..++.+|...|++++|+..|+++++ +.| +...|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHH
Confidence 4556778888888889999999988888888887 778899999999999999999999999999 889 466899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 765 KNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.+|.+.|++++|+..|+++++ +.|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 999999999999999999987 456654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-09 Score=94.07 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHh
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLA 769 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 769 (846)
...+..+.+.|++++|++.|+++....|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..+|..++.+|..
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHH
Confidence 33344444444444444444444433333 344444455555555555555555555555 4442 3345555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 003122 770 AGNWRKYIEVLQWMED 785 (846)
Q Consensus 770 ~g~~~~A~~~~~~~~~ 785 (846)
.|++++|+..|+++++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-09 Score=121.27 Aligned_cols=163 Identities=9% Similarity=-0.038 Sum_probs=118.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 003122 595 QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
.|++++|+..|+++.+.. +.+...|..++..|...|++++|.+.|++..+. .| +..++..++.+|...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478888999998888752 334788888888898899999999999998874 44 47788888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS---GRIESMMKLFFKIVS 750 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 750 (846)
.++++++.++. +...+..++.++...|++++|++.++++....|. +..++..++.++... |++++|.+.++++++
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999887655 6778888888999999999999999988877776 667888888888888 899999999999988
Q ss_pred cCCCcCHH-HHHHHH
Q 003122 751 SGAEANFN-TYSILL 764 (846)
Q Consensus 751 ~g~~p~~~-~~~~l~ 764 (846)
..|+.. .|..++
T Consensus 157 --~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 --QGVGAVEPFAFLS 169 (568)
T ss_dssp --HTCCCSCHHHHTT
T ss_pred --cCCcccChHHHhC
Confidence 777543 554444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-09 Score=109.02 Aligned_cols=199 Identities=7% Similarity=-0.005 Sum_probs=119.0
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHH
Q 003122 560 LSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS----GCSPD-VITYTAMLHAYNTAEDWE 634 (846)
Q Consensus 560 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~ 634 (846)
.+++++|...|.++ +..|...|++++|...|.++... +-.+. ..+|+.++.+|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666665544 33455666677776666665542 10001 346666677777777777
Q ss_pred HHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHH
Q 003122 635 KACALFLEMETNN--I-EPD--SIACSALMRAFNKGGQPSKVLLVAEFMREQDITF-----SDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 635 ~A~~~~~~~~~~g--~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 704 (846)
+|+..|++.++.- . .+. ..++..+..+|.. |++++|+..|+++++..... ...++..++.++...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 7777777765420 0 111 3456667777766 77888877777777532211 1345667777788888888
Q ss_pred HHHHHHHhhccCCCcc-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH------HHHHHHHHHHHhcCCH
Q 003122 705 TTIDLIKQMEPSFHVV-----SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF------NTYSILLKNLLAAGNW 773 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~ 773 (846)
+|+..++++....+.. ...++..++.++...|++++|...|++++ +.|+. .....++.+| ..|+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~p~~~~~~e~~~l~~l~~~~-~~~d~ 248 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY---SIPGFSGSEDCAALEDLLQAY-DEQDE 248 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTTSTTSHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---CCCCCCCCHHHHHHHHHHHHH-HhcCH
Confidence 8888877765433221 12356677777778888888888888887 34421 1233344444 56665
Q ss_pred HHHHH
Q 003122 774 RKYIE 778 (846)
Q Consensus 774 ~~A~~ 778 (846)
+++..
T Consensus 249 ~~~~~ 253 (307)
T 2ifu_A 249 EQLLR 253 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.02 E-value=8.7e-07 Score=96.81 Aligned_cols=124 Identities=14% Similarity=0.011 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK-GGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC 697 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 697 (846)
.|...+..+.+.+..+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+.+++..+. ++..+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4445555555555666666666666 21 11233333322222112 22466666666666654332 334444445555
Q ss_pred HhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 698 SLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
...|+.+.|..+++++.. +..+|...+..-...|+.+.+..+++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666666666666521 345555555555556666666666666553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-09 Score=118.82 Aligned_cols=164 Identities=11% Similarity=-0.033 Sum_probs=123.9
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 560 LSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACAL 639 (846)
Q Consensus 560 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 639 (846)
.|++++|+..++++++.. +.+...+..++..|...|++++|.+.|++.++.. +.+...|..++.+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998764 5678889999999999999999999999999863 33588899999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHhhcc
Q 003122 640 FLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL---RDWKTTIDLIKQMEP 715 (846)
Q Consensus 640 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 715 (846)
|++..+. .| +...+..+..+|.+.|++++|++.++++++.++. +...+..++.++... |++++|++.++++..
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999984 44 4778899999999999999999999999987765 678888999999999 999999999999988
Q ss_pred CCCccchhhHHHHH
Q 003122 716 SFHVVSIGLLNQLL 729 (846)
Q Consensus 716 ~~~~~~~~~~~~l~ 729 (846)
.+|. +...+..++
T Consensus 157 ~~p~-~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVG-AVEPFAFLS 169 (568)
T ss_dssp HTCC-CSCHHHHTT
T ss_pred cCCc-ccChHHHhC
Confidence 8876 444554444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.1e-08 Score=99.44 Aligned_cols=160 Identities=11% Similarity=-0.070 Sum_probs=107.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-C----HHHHHHH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNN-IEPDS----IACSALMRAFNKGGQPSKVLLVAEFMREQDITF-S----DSIFFEM 693 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l 693 (846)
+..+...|++++|..++++..+.. ..|+. ..+..++..+...|++++|+..++++++..... + ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455667777777777777776521 11221 123345556666677788888888777633221 1 2256777
Q ss_pred HHHHHhcCCHHHHHHHHHhhcc------CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------C-HHHH
Q 003122 694 VLACSLLRDWKTTIDLIKQMEP------SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA------N-FNTY 760 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p------~-~~~~ 760 (846)
+.+|...|++++|+..++++.. ........++..++.+|.+.|++++|...++++++ +.+ . ..+|
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~--~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE--ISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTBCTTHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHcCcHHHHHHHH
Confidence 7777777777777777776652 22222355788888999999999999999988886 432 1 3478
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 003122 761 SILLKNLLAAGN-WRKYIEVLQWMED 785 (846)
Q Consensus 761 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 785 (846)
..++.+|.+.|+ +++|++.++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888888988884 6889888888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-07 Score=94.75 Aligned_cols=225 Identities=9% Similarity=0.067 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C
Q 003122 565 EALGFLDEMMDLKIPLTNQVYSSVISAYSKQGL----------IAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE--D 632 (846)
Q Consensus 565 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~ 632 (846)
+|+.+.+.++..+ |.+..+|+.-..++...+. +++++.+++.++... +-+..+|+.-..++...+ .
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 5566666666543 3344445444333333222 567777777777653 345777777777776666 3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 003122 633 WEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ-PSKVLLVAEFMREQDITFSDSIFFEMVLACSLL----------- 700 (846)
Q Consensus 633 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 700 (846)
+++++.+++++.+.. +-|..+|+.-..++...|. ++++++.++++++.++. +...|+..+.++...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence 778888888887742 3356677777777777777 47788888888877666 667776666665554
Q ss_pred ---CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q 003122 701 ---RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS-----------GRIESMMKLFFKIVSSGAEANFNTYSILLKN 766 (846)
Q Consensus 701 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 766 (846)
+.++++++.++++....|. +..+|+.+...+... +.++++++.++++++ ++||+ .|..+..+
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~ 279 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTII 279 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHH
Confidence 4577888888888777777 777887777776665 468889999999998 88876 34333332
Q ss_pred -----HHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHH
Q 003122 767 -----LLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIV 799 (846)
Q Consensus 767 -----~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 799 (846)
....|..+++...+.++.+ +.|- .+-|..+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHH
Confidence 2245777888888888876 4443 23455553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.1e-08 Score=98.38 Aligned_cols=164 Identities=10% Similarity=-0.056 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CC--H
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS------IACSALMRAFNKGGQPSKVLLVAEFMREQDIT---FS--D 687 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~ 687 (846)
.+...+..+...|++++|.+.+++..+.... .. ..+..++..+...|++++|+..++++++.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566677778888888888777763211 11 22344555667778888888888888753221 11 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhc---cCCCc---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-----
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQME---PSFHV---VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----- 756 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----- 756 (846)
.+++.++.+|...|++++|+..++++. ...+. ....+++.++.+|...|++++|...++++++ +.++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~--~~~~~~~~~ 233 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE--ISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTBCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH--HHHhcCcHH
Confidence 467788888888888888888888765 22222 1236889999999999999999999999987 4333
Q ss_pred --HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003122 757 --FNTYSILLKNLLAAGNWRKY-IEVLQWMED 785 (846)
Q Consensus 757 --~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 785 (846)
..+|..++.+|.+.|++++| ...++++.+
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45889999999999999999 777888754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.6e-09 Score=89.99 Aligned_cols=115 Identities=8% Similarity=-0.016 Sum_probs=102.2
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH
Q 003122 648 IEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN 726 (846)
Q Consensus 648 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 726 (846)
+.|+ ...+...+..|.+.|++++|++.|+++++.++. +...+..++.++...|++++|+..++++...+|. +..+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 5565 457888999999999999999999999998776 7889999999999999999999999999988888 788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKN 766 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 766 (846)
.++.+|...|++++|++.|+++++ +.|+ ..++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHh
Confidence 999999999999999999999999 9995 4566666543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-08 Score=97.38 Aligned_cols=129 Identities=11% Similarity=0.086 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
.++..+...|++++|+..|++++ .|+..++..++.+|...|++++|+..|+++++.++. +...+..++.++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444444455555555554442 334444555555555555555555555555544332 3444444444555555
Q ss_pred CHHHHHHHHHhhccCCCc---------------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 702 DWKTTIDLIKQMEPSFHV---------------VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
++++|+..++++....|. ....++..++.+|...|++++|.+.|+++++ +.|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 555555554444433322 1235677777777777777777777777777 66754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=5.1e-07 Score=98.65 Aligned_cols=377 Identities=9% Similarity=-0.038 Sum_probs=210.7
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCC-HHHH
Q 003122 384 SHG-MSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGL-LAEA 461 (846)
Q Consensus 384 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A 461 (846)
+.| +++.|..+|+.+... -|. |+++.+..+|++.... .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 445 367777777777652 122 8888888888888774 5688888887777666553 3556
Q ss_pred HHHHHHHHHC-CCC-CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 462 VEVFREMEQD-GIE-PNIVSICTLLAACG----RCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALY 535 (846)
Q Consensus 462 ~~~~~~~~~~-g~~-~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 535 (846)
..+|+.++.. |.. .+...|...+..+. ..++.+.+..+|+.++......-...|......- +......+.+++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHH
Confidence 6677776653 332 34555655555443 2355677777777777632111112222221111 111111122211
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CC-----HHHHHHHHHHH
Q 003122 536 KCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQ--GL-----IAEAESMFNMM 608 (846)
Q Consensus 536 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~-----~~~A~~~~~~~ 608 (846)
.+. .+.+..|..+++++...-...+...|...+..-... |- .+.+..+|+++
T Consensus 147 ~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 111 112333444444333210011334454444432221 10 34566788887
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----
Q 003122 609 KMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS-IACSALMRAFNKGGQPSKVLLVAEFMREQD----- 682 (846)
Q Consensus 609 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 682 (846)
+.. ++.+...|...+..+.+.|+.++|..+|++++.. |.. ..|.. |......++. ++.+.+.-
T Consensus 206 l~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 206 LDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----
T ss_pred HHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhcc
Confidence 775 2445777888888788888888888888888875 443 22222 2221112222 22222210
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC
Q 003122 683 -------ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG-RIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 683 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~ 754 (846)
.......|...+..+.+.+..+.|..+++++ . .|..+..+|...+..-...| +.+.|..+|+.+++ ..
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~--~~ 350 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL--KH 350 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH--HC
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HC
Confidence 0001244566666666778888899999888 3 23335556655555544444 68899999999888 45
Q ss_pred cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003122 755 AN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 755 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
|+ ...|...+......|+.+.|..+|+++. .....+...+.+-...|+.+.+..++++...
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 64 3455566777778888888888888862 2455677777777778888888776665554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.2e-08 Score=96.86 Aligned_cols=223 Identities=7% Similarity=-0.033 Sum_probs=174.8
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 593 SKQGLI-AEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAED----------WEKACALFLEMETNNIEPDSIACSALMR 660 (846)
Q Consensus 593 ~~~g~~-~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 660 (846)
.+.|.+ ++|+.+++.++.. .|+ ..+|+.-...+...+. +++++.+++.++.. -+-+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-~PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 345555 4899999999985 454 6777766666554443 68999999999984 2346789998888
Q ss_pred HHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhhccCCCccchhhHHHHHHHHHhc--
Q 003122 661 AFNKGGQ--PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD-WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS-- 735 (846)
Q Consensus 661 ~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 735 (846)
++.+.|+ +++++.+++++++.++. +..+|..-..++...|. ++++++.++++...+|. +..+|+..+.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhh
Confidence 8888884 89999999999998877 88999999999999998 69999999999999988 889999999888776
Q ss_pred ------------CCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCC
Q 003122 736 ------------GRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAA-----------GNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 736 ------------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~ 791 (846)
+.++++.+.+.+++. ..| |..+|+.+...+.+. +.++++++.++++.+ +.||
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd 270 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPE 270 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred ccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcc
Confidence 568999999999999 999 666888887777766 568899999999998 6777
Q ss_pred HH-hHHHHHHH---HHhcCCcchHHHHHHHHHHHhhc
Q 003122 792 YG-MFRDIVSF---AQTRGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 792 ~~-~~~~l~~~---~~~~~~~~~a~~~~~~l~~l~~~ 824 (846)
.. ++..++.. +...+..++....+.++.++.+.
T Consensus 271 ~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 271 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 53 33333322 22355666777777777776543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.1e-09 Score=94.60 Aligned_cols=107 Identities=8% Similarity=-0.013 Sum_probs=90.5
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH
Q 003122 648 IEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN 726 (846)
Q Consensus 648 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 726 (846)
+.|+ ...+..++..+.+.|++++|+..|+++++.+|. +...|..++.+|...|++++|+..++++....|. ++.+|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence 4454 446777888888889999999999988887766 7788888888899999999999999988888887 678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
.++.+|...|++++|+..|+++++ +.||..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 999999999999999999999999 788764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-08 Score=95.44 Aligned_cols=131 Identities=9% Similarity=-0.048 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..++..+...|++++|+..|++++ .++...+..++.++...|++++|+..++++....|. +..+|..++.+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 345667788999999999999999884 457889999999999999999999999999888877 778999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcC-H----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEAN-F----------------NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p~-~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
...|++++|++.|+++++ ..|+ . .++..++.+|...|++++|+..++++.+ +.|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALI--QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHH--TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HHcccHHHHHHHHHHHHH--hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 999999999999999999 6662 3 6899999999999999999999999987 45544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-09 Score=96.28 Aligned_cols=108 Identities=7% Similarity=-0.005 Sum_probs=85.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
.|+++++..+. +...+..++..+...|++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++ +
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l 84 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAV--M 84 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--c
Confidence 35555554433 4556677777888888888888888888777776 677888888888889999999999999988 8
Q ss_pred Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 754 EA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 754 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.| +...|..++.+|...|++++|+..|+++++
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88 456888888889999999999999888876
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-07 Score=94.38 Aligned_cols=221 Identities=10% Similarity=0.009 Sum_probs=152.2
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHH
Q 003122 560 LSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG-LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA-E-DWEKA 636 (846)
Q Consensus 560 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-~~~~A 636 (846)
.+..++|++++++++..+ |.+..+|+.-..++...| .+++++.+++.++... +.+..+|+.-..++... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344567788888877764 556667777777777777 4888888888888753 34577777777777665 6 77888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------
Q 003122 637 CALFLEMETNNIEPDSIACSALMRAFNKGGQPS--------KVLLVAEFMREQDITFSDSIFFEMVLACSLLRD------ 702 (846)
Q Consensus 637 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 702 (846)
+++++++++.. +-|..+|+.-..++.+.|.++ ++++.++++++.++. +...|+....++...+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 88888887642 335667777666666666666 788888888887766 77777777777777765
Q ss_pred -HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC----C-CcC
Q 003122 703 -WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI--------------------ESMMKLFFKIVSSG----A-EAN 756 (846)
Q Consensus 703 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g----~-~p~ 756 (846)
++++++.++++....|. +..+|+.+...+.+.|+- ........+++..+ . .+.
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 67888888888777777 777888877777776643 23333333333211 1 124
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 757 FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 757 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
......|+.+|.+.|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55777888888888988899998888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-08 Score=97.41 Aligned_cols=190 Identities=9% Similarity=-0.008 Sum_probs=142.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------
Q 003122 594 KQGLIAEAESMFNMMKMSGCSPD-VITYTAM-------LHAYNTAEDWEKACALFLEMETNNIEPD-------------- 651 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------- 651 (846)
..++.+.|.+.|.++... .|+ ...|..+ ...+...++..+++..+.+.++ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 578888888888888885 354 7788877 5666666666666666666654 2221
Q ss_pred --------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-ch
Q 003122 652 --------SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-SI 722 (846)
Q Consensus 652 --------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 722 (846)
......+...+...|++++|.++|+.+...++ +....+.++.++.+.++|++|+..++......+.. ..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 23445567788899999999999998887554 33377788889999999999999998765443221 23
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-F-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
.++..++.++...|++++|+..|+++.....+|. . .....++.++.++|+.++|...|+++.. ..|+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 4788999999999999999999999986322264 3 3778889999999999999999999987 4566
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-08 Score=91.61 Aligned_cols=126 Identities=6% Similarity=-0.042 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
.+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. +..+|..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 3444555555555666666655555554433 3444555555555555555555555555444443 3445555556666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc-CHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEA-NFNTYSIL--LKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 783 (846)
..|++++|...|+++++ ..| +...+..+ +..+.+.|++++|+..+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666665 455 22333222 22255555555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-07 Score=94.52 Aligned_cols=222 Identities=10% Similarity=-0.019 Sum_probs=174.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-Chh
Q 003122 593 SKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE-DWEKACALFLEMETNNIEPDSIACSALMRAFNKG-G-QPS 669 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g-~~~ 669 (846)
...+..++|++++++++... +-+..+|+.-...+...| .+++++.+++.++... +-+..+|+.-..++.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 33455678999999999863 334788999888888888 5999999999999842 34577899888888877 7 899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHhhccCCCccchhhHHHHHHHHHhcCC----
Q 003122 670 KVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWK--------TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR---- 737 (846)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 737 (846)
+++++++++++.+++ +..+|..-..++...|.++ ++++.++++...+|. +..+|+..+.++...++
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 999999999998877 8888888888888777777 999999999999888 88999999999999886
Q ss_pred ---HHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC----C-
Q 003122 738 ---IESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNW--------------------RKYIEVLQWMEDAG----I- 788 (846)
Q Consensus 738 ---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g----~- 788 (846)
++++++.+++++. ..| |..+|+.+...+.+.|+. .+..+....+...+ .
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7999999999999 899 667999888888887764 22333333332211 0
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003122 789 QPSYGMFRDIVSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 789 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
.+++....-++..+...++.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 23455667778888888988999999988764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-07 Score=95.04 Aligned_cols=174 Identities=7% Similarity=-0.026 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc-----cchh
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD-----SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV-----VSIG 723 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ 723 (846)
.+...+..+...|++++|++.+++.++....... ..+..++..+...|++++|+..++++....+. ....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4556677889999999999999999986443211 23456777888999999999999987643221 1255
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CC-H
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSS-GAEAN-----FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ----PS-Y 792 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----p~-~ 792 (846)
+|+.++..|...|++++|...|+++++. ...|+ ..+|..++.+|...|++++|+..++++++.... .. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8999999999999999999999999831 02332 258899999999999999999999998763211 11 4
Q ss_pred HhHHHHHHHHHhcCCcchH-HHHHHHHHHHhhccCC
Q 003122 793 GMFRDIVSFAQTRGGAEYA-AIIQERIESLRMKSGD 827 (846)
Q Consensus 793 ~~~~~l~~~~~~~~~~~~a-~~~~~~l~~l~~~~~~ 827 (846)
.++..++..+...|+.++| ...+++...+.+....
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 4678889999999999999 8888888887766654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=88.39 Aligned_cols=104 Identities=7% Similarity=-0.053 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH--------HHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF--------NTY 760 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--------~~~ 760 (846)
.+..++..+...|++++|+..|+++...+|. +..+|..++.+|...|++++|++.++++++ +.|+. .+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHH
Confidence 4456667777777777777777777666666 667788888888888888888888888887 66632 267
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 003122 761 SILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRD 797 (846)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 797 (846)
..++.+|...|++++|++.|++.++ ..|++.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 7788888889999999999988876 4566654443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=94.58 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=88.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH-HHhcCCH--H
Q 003122 663 NKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL-LGKSGRI--E 739 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 739 (846)
...|++++|+..++++++..+. +...+..++.+|...|++++|+..++++....|. +..++..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 3457777777777777776554 5677777777777788888888887777766665 56677778877 6677887 8
Q ss_pred HHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 740 SMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+|...++++++ ..|+ ...+..++.+|...|++++|+..++++.+.
T Consensus 99 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALA--LDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888 7774 557778888888888888888888888773
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.87 E-value=9.5e-09 Score=103.93 Aligned_cols=191 Identities=11% Similarity=-0.028 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSAL 658 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 658 (846)
.+...+..++..+...|++++|+..|++++... +.+...|..++.+|...|++++|+..++++++. .| +...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 345667777888888888888888888888753 235788888888888888888888888888873 44 46678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITF----SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
+.+|...|++++|+..|+++++.++.. ....+..+ .......+.. ......+. +..+...++..+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~-~~~i~~~l~~l~-- 147 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS------IEERRIHQ-ESELHSYLTRLI-- 147 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH------HHHTCCCC-CCHHHHHHHHHH--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH------HHHHHHhh-hHHHHHHHHHHH--
Confidence 888888889999988888888754321 11111111 1112222222 11112222 333444444433
Q ss_pred cCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 003122 735 SGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAA-GNWRKYIEVLQWMEDA 786 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 786 (846)
.|++++|++.++++++ +.|+.. ....+...+.+. +.+++|.++|+++.+.
T Consensus 148 ~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6899999999999998 888654 555555556665 7788999999887653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-08 Score=86.37 Aligned_cols=116 Identities=6% Similarity=-0.004 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 445666666666677777777777766665443 4556666666666666666666666666655554 55666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcC
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAG 771 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 771 (846)
+...|++++|++.|+++++ ..|+ ...+..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD--LDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhc
Confidence 7777777777777777776 6663 346666666666555
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-08 Score=97.70 Aligned_cols=204 Identities=8% Similarity=-0.002 Sum_probs=158.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCC-----CC------
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPD-SIACSAL-------MRAFNKGGQPSKVLLVAEFMREQDIT-----FS------ 686 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~------ 686 (846)
++ ..++..+|.+.|.++.. ..|+ ...|..+ ..++...++..+++..+...++..+. .+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTC
T ss_pred cc-cCCCHHHHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccc
Confidence 44 57999999999999998 5665 6789888 57777777888888888877763211 01
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cC
Q 003122 687 ---------DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE-AN 756 (846)
Q Consensus 687 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~ 756 (846)
.......+.++...|++++|.++|+.+....|. .. ....++..+.+.|++++|+..|+++.. .. |.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~--~~d~~ 168 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGK--WPDKF 168 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGG--CSCHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhc--cCCcc
Confidence 334556778899999999999999999888876 44 777888999999999999999998776 32 21
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhc------cC
Q 003122 757 --FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS--YGMFRDIVSFAQTRGGAEYAAIIQERIESLRMK------SG 826 (846)
Q Consensus 757 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~------~~ 826 (846)
..+++.++.++...|++++|+..|+++......|. .......+..+.+.|+.++|...++++....+. +.
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL~ 248 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHh
Confidence 34789999999999999999999999986433254 335677788899999999999999999876554 33
Q ss_pred CCCCCCCccC
Q 003122 827 DPSFDQQSTS 836 (846)
Q Consensus 827 ~~~~~~~~~~ 836 (846)
...|.+.+++
T Consensus 249 ~~~~~~~~t~ 258 (282)
T 4f3v_A 249 DPSYRLKTTT 258 (282)
T ss_dssp CTTCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 4555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.5e-07 Score=91.73 Aligned_cols=174 Identities=7% Similarity=-0.056 Sum_probs=133.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-c----hhhHH
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDIT-FSD----SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-S----IGLLN 726 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~ 726 (846)
..+..+...|++++|..+++++.+.... ++. ..+..++..+...|++++|+..++++....+.. + ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788999999999999999974432 121 133357778888899999999999987532221 1 34799
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HHhH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSS-----GAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAG----IQPS-YGMF 795 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p~-~~~~ 795 (846)
.++.+|...|++++|...|+++++. +..+. ..+|..++.+|.+.|++++|+..++++++.. ..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999999841 12233 2389999999999999999999999987631 2222 4478
Q ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHhhccCCCCC
Q 003122 796 RDIVSFAQTRGG-AEYAAIIQERIESLRMKSGDPSF 830 (846)
Q Consensus 796 ~~l~~~~~~~~~-~~~a~~~~~~l~~l~~~~~~~~~ 830 (846)
..++..+...|+ .++|...+++...+.+......+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~ 275 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGG
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 888999999995 59999999999998877765443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-08 Score=101.96 Aligned_cols=130 Identities=11% Similarity=-0.074 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFS--------------DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
..+..+...|.+.|++++|+..|+++++..+... ...+..++.+|...|++++|+..++++....|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455555555556666666666666555443321 46677777777777888888877777777776
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003122 719 VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKY-IEVLQWMED 785 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 785 (846)
. +..+|..++.+|...|++++|+..|+++++ +.| +..++..++.++...|++++| ...+++|..
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 667788888888888888888888888888 788 455788888888888888888 446666643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=91.56 Aligned_cols=97 Identities=7% Similarity=-0.053 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILL 764 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 764 (846)
+...+..++..+...|++++|+..++++...+|. +..+|..++.+|...|++++|+..|+++++ +.| +...|..++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHH
Confidence 3445566777777777788888777777777776 667788888888888888888888888888 778 455788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003122 765 KNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+|...|++++|+..++++++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888876
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=91.29 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=88.4
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 639 LFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 639 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
.|++++. +.|+ ...+..++..+...|++++|+..|+++++.++. +...+..++.++...|++++|+..++++....
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444544 3443 446667777888888888888888888887665 67778888888888888888888888887777
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 718 HVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 718 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
|. ++.++..++.+|...|++++|++.|+++++ +.|+.
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 122 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQE--LIANX 122 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTC
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 76 667888899999999999999999999988 76753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=6.4e-08 Score=84.59 Aligned_cols=117 Identities=10% Similarity=-0.089 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..++..+...|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHH
Confidence 34555555555666666666666666554433 4455555555555555555555555555544444 445566666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCH
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNW 773 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 773 (846)
...|++++|...++++++ ..| +...+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHhcC
Confidence 666666666666666666 555 344566666666665553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-07 Score=86.43 Aligned_cols=136 Identities=9% Similarity=-0.050 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLK 765 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 765 (846)
...+..++..+...|++++|+..++++....|. +..++..++.++...|++++|...++++++ ..| +..+|..++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 456778889999999999999999999888877 678999999999999999999999999999 788 5668999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHhH--HHHHHHHHhcCCcchHHHHHHHHHHHhhccCC
Q 003122 766 NLLAAGNWRKYIEVLQWMEDAGIQPS-YGMF--RDIVSFAQTRGGAEYAAIIQERIESLRMKSGD 827 (846)
Q Consensus 766 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~--~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~~ 827 (846)
+|...|++++|+..++++.+. .|+ ...+ ...+..+...|++++|...+++..++......
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence 999999999999999999884 443 3344 33344467788999999999999888766544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-08 Score=100.18 Aligned_cols=218 Identities=11% Similarity=-0.034 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 616 DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMV 694 (846)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 694 (846)
+...+..++..+...|++++|+..|+++++. .| +...|..++.+|.+.|++++|+..++++++.++. +...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4677888999999999999999999999984 45 6788999999999999999999999999997765 778899999
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 003122 695 LACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 774 (846)
.++...|++++|+..++++....|.. ...+...+....+ ..++......... -..++......+...+ .|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPSALR---IAKKKRWNSIEER-RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCCSHHHHHHH---HHHHHHHHHHHHT-CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc-hhhHHHHHHHHHH---HHHHHHHHHHHHH-HHhhhHHHHHHHHHHH--HHHHH
Confidence 99999999999999999886655532 1111112222211 1122222222222 1233444555454433 69999
Q ss_pred HHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhc-CCcchHHHHHHHHHHHhhccCC--CCCCCCccCCCccceecc
Q 003122 775 KYIEVLQWMEDAGIQPSYGM-FRDIVSFAQTR-GGAEYAAIIQERIESLRMKSGD--PSFDQQSTSSSSSIVTVD 845 (846)
Q Consensus 775 ~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~-~~~~~a~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 845 (846)
+|++.++++.+ ..|+... ...+...+... +..+++..+++++.+-...... .-.+|++..-..-+|..+
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~dPv~~~ 225 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITP 225 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCSSEEECS
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhcCCeECC
Confidence 99999998876 4565543 33333333332 3344555555444332222111 112355555555555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=81.53 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
.+..++..+...|++++|+..++++++..+. +...+..++.++...|++++|+.+++++....|. +..++..++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 3444444444444444444444444443322 3333444444444444444444444444333333 3344445555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLL 768 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 768 (846)
..|++++|...++++++ ..| +...+..++.++.
T Consensus 89 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE--LDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 55555555555555555 444 2334444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.7e-08 Score=92.28 Aligned_cols=96 Identities=6% Similarity=-0.015 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC------CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcC--HH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPS------FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA---EAN--FN 758 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~--~~ 758 (846)
+..++.++...|++++|+..+++.... .+.....++..++..+...|++++|...++++++... .+. ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 334444444444444444444443221 1111344577888888888888888888888875211 111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 759 TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++..++.+|...|++++|...++++.+
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567788889999999999988888765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=82.44 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHH
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKN 766 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 766 (846)
..+...+..+...|++++|+..++++....|. +..+|..++.+|...|++++|+..++++++ +.|+ ..+|..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 44556666666777777777777766666665 566777788888888888888888888887 7773 5577777888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~ 785 (846)
|...|++++|+..++++.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 8888888888888887766
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=8.3e-09 Score=98.35 Aligned_cols=152 Identities=11% Similarity=-0.037 Sum_probs=82.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---------------HHHHHHH
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS---------------DSIFFEM 693 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l 693 (846)
..|++++|.+.|+...+. .......+..++..+...|++++|+..|+++++..+... ...+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 344555555444432221 011233455566666677777777777777776433311 1455666
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCC
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGN 772 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 772 (846)
+.++...|++++|+..++++....|. +..++..++.+|...|++++|+..|+++++ +.| +..++..++.++...|+
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHH
Confidence 66666667777777666666665555 556666777777777777777777777777 666 34466666666666666
Q ss_pred HHHHH-HHHHHHH
Q 003122 773 WRKYI-EVLQWME 784 (846)
Q Consensus 773 ~~~A~-~~~~~~~ 784 (846)
.+++. ..+++|.
T Consensus 172 ~~~~~~~~~~~~f 184 (198)
T 2fbn_A 172 ARKKDKLTFGGMF 184 (198)
T ss_dssp HHC----------
T ss_pred HHHHHHHHHHHHh
Confidence 66555 3444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-07 Score=82.97 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc------chhhHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV------SIGLLNQ 727 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~ 727 (846)
++..++..+.+.|++++|+..|+++++.+|. +...+..++.+|...|++++|++.++++....|.. ...+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444555555555555555555555554433 44455555555555555555555555543332221 1235778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHH
Q 003122 728 LLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYS 761 (846)
Q Consensus 728 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 761 (846)
++.++...|++++|++.|+++++ ..||+....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 88888899999999999999988 777765443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.7e-08 Score=91.82 Aligned_cols=124 Identities=11% Similarity=0.003 Sum_probs=77.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA-CSLLRDW--KT 705 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 705 (846)
..|++++|+..+++.++.. +.+...|..++.+|...|++++|+..|+++++.++. +...+..++.+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3456666666666666531 224556666666666666666666666666665443 45556666666 5566666 77
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
|+..++++....|. +..++..++.+|...|++++|...|+++++ ..|+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD--LNSPR 148 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCC
Confidence 77777666666665 556677777777777888888888888777 66643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-07 Score=82.65 Aligned_cols=98 Identities=5% Similarity=-0.122 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..++..+.+.|++++|+..|+++++.++. +...+..++.++...|++++|+..++++....|. +..+|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 45666667777777777777777777776554 5677777777777778888888777777777776 567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC
Q 003122 733 GKSGRIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~ 754 (846)
...|++++|+..|+++++ +.
T Consensus 83 ~~~~~~~~A~~~~~~al~--~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAART--KD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HH
T ss_pred HHHhCHHHHHHHHHHHHH--hC
Confidence 888888888888888888 77
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=98.31 Aligned_cols=130 Identities=11% Similarity=-0.028 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD----------------SIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
...|..++..|.+.|++++|+..|+++++. .|+ ..+|..+..+|.+.|++++|+..++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666667777777777777777777663 333 36788888888899999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM-MKLFFKIVS 750 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 750 (846)
..+. +...+..++.+|...|++++|+..++++....|. +..++..++.++...|+.++| ...|++++.
T Consensus 225 ~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765 7788888899999999999999999998888887 677888999999999998888 557777765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=89.38 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccC-----CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---Cc-C-
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPS-----FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA---EA-N- 756 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p-~- 756 (846)
...+..++.++...|++++|+..++++... .+.....++..++..|...|++++|.+.++++++ + .+ +
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~ 103 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE--LLASLPEDP 103 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHSCCCH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHcCccH
Confidence 334444444555555555555544444320 1112456788999999999999999999999987 4 22 2
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHH----hHHHHHHHHHhcCCcchHHHHHHHHHHHhhccCC
Q 003122 757 ---FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PSYG----MFRDIVSFAQTRGGAEYAAIIQERIESLRMKSGD 827 (846)
Q Consensus 757 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~----~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~~ 827 (846)
..++..++.+|...|++++|+..++++.+..-. .++. .+..++..+...|+.++|...+++..++.++..+
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 237888899999999999999999998753111 2222 3567788889999999999999999988777654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.5e-08 Score=82.93 Aligned_cols=94 Identities=7% Similarity=-0.136 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNL 767 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 767 (846)
.+..++..+...|++++|+..++++....|. +..+|..++.++...|++++|+..|+++++ +.| +...+..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3456677777788888888888887777776 677788888888888888888888888888 788 455788888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003122 768 LAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 768 ~~~g~~~~A~~~~~~~~~ 785 (846)
...|++++|+..++++++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888888765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.7e-07 Score=78.88 Aligned_cols=118 Identities=5% Similarity=-0.042 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILL 764 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 764 (846)
+...+..++..+...|++++|+..++++....|. +..++..++.++...|++++|...++++++ ..|+ ...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHH
Confidence 4567788899999999999999999999888776 678899999999999999999999999999 7884 66899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCc
Q 003122 765 KNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQTRGGA 808 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~ 808 (846)
.+|...|++++|+..++++.+. .| +...+..++..+...|+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999884 44 455666666666665554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=84.05 Aligned_cols=103 Identities=9% Similarity=-0.079 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
...+..+...+.+.|++++|+..|++++..++. +...+..++.++...|++++|+..++++....|. ++.++..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 345566677777788888888888888776655 6677777788888888888888888887777776 66777888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
|...|++++|++.|+++++ +.|+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~--~~p~~~ 120 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA--LAAAQP 120 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HHHTCG
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCc
Confidence 8888888888888888888 777443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.5e-07 Score=80.17 Aligned_cols=117 Identities=11% Similarity=-0.009 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
...|..++..+...|++++|+..|+++.+.. +.+..++..++.++...|++++|+..++++++..+. +...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4445555555555555555555555555421 123445555555555555555555555555554433 44555555555
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 736 (846)
+...|++++|+..++++....|. +..++..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 55556666666555555544444 3445555555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=5.4e-07 Score=76.85 Aligned_cols=91 Identities=10% Similarity=-0.098 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhc
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAA 770 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 770 (846)
.++..+...|++++|+..++++....|. +..++..++.++...|++++|...++++++ ..| +...+..++.+|...
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHH
Confidence 3333333344444444444433333332 233444444444444444444444444444 334 233444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 003122 771 GNWRKYIEVLQWMED 785 (846)
Q Consensus 771 g~~~~A~~~~~~~~~ 785 (846)
|++++|...++++.+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-07 Score=84.84 Aligned_cols=93 Identities=13% Similarity=0.010 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 768 (846)
+..++..+...|++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++ +.|+ ...|..++.+|.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 334444444444444444444444444333 334444555555555555555555555555 4442 334555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003122 769 AAGNWRKYIEVLQWMED 785 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~ 785 (846)
..|++++|+..|+++++
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=7.3e-07 Score=76.88 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAF 662 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 662 (846)
..+..++..+...|++++|...|+++.... +.+..++..++..+...|++++|...++++.+.. +.+..++..+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444555555555555555555554431 2234444445555555555555555555544421 12334444444444
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 003122 663 NKGGQPSKVLLVAEFMREQ 681 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~ 681 (846)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555544443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=80.49 Aligned_cols=99 Identities=7% Similarity=-0.057 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
+..++..+.+.|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 445666777788888888888888876655 6777777888888888888888888888777776 66778888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCcCH
Q 003122 735 SGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.|++++|+..++++++ ..|+.
T Consensus 98 ~g~~~~A~~~~~~al~--~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLL--SQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHH--hCcCC
Confidence 8888888888888888 77753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-07 Score=84.16 Aligned_cols=104 Identities=11% Similarity=-0.135 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHH
Q 003122 651 DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLH 730 (846)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 730 (846)
+...+..+...+.+.|++++|+..|+++++..+. +...+..++.+|...|++++|+..++++....|. +..+|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4667888999999999999999999999998766 7889999999999999999999999999988888 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 731 LLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 731 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
+|...|++++|+..|+++++ +.|+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~--~~p~~~ 113 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE--AEGNGG 113 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHSSSC
T ss_pred HHHHccCHHHHHHHHHHHHH--hCCCch
Confidence 99999999999999999999 888543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.5e-07 Score=80.82 Aligned_cols=95 Identities=9% Similarity=-0.069 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHH
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKN 766 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 766 (846)
..+..++..+...|++++|+..++++....|. +..+|..++.++...|++++|+..++++++ +.|+ ...|..++.+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 33444444444444444444444444433333 334445555555555555555555555555 4442 3355555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~ 785 (846)
|...|++++|+..++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=9.3e-07 Score=75.32 Aligned_cols=112 Identities=11% Similarity=-0.108 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHH
Q 003122 651 DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLH 730 (846)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 730 (846)
+...+..++..+...|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3567788899999999999999999999987655 7888999999999999999999999999888877 6788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHH
Q 003122 731 LLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKN 766 (846)
Q Consensus 731 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 766 (846)
++...|++++|.+.++++++ ..|+ ...+..++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK--HEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH--cCCCCHHHHHHHHHh
Confidence 99999999999999999999 8885 4466555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=6.8e-07 Score=78.86 Aligned_cols=104 Identities=6% Similarity=-0.092 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHH
Q 003122 649 EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQL 728 (846)
Q Consensus 649 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 728 (846)
+.+...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. +..+|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 345778999999999999999999999999997765 7888999999999999999999999999888887 77899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 729 LHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 729 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+.+|...|++++|+..|+++++ +.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~--~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS--LAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH--HChh
Confidence 9999999999999999999998 6664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4e-07 Score=79.44 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC--------HHHHHHH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN--------FNTYSIL 763 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~~~~~~l 763 (846)
.++..+...|++++|+..++++....|. +..++..++.++...|++++|...++++++ ..|+ ..+|..+
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHh--hccccchhHHHHHHHHHHH
Confidence 3333444444444444444443333333 333444445555555555555555555544 3331 3345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+.+|...|++++|...++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.5e-07 Score=78.52 Aligned_cols=115 Identities=9% Similarity=-0.033 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--c----hhhH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--S----IGLL 725 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 725 (846)
...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|.. + ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456788899999999999999999999987655 77888999999999999999999999987665541 1 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLA 769 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 769 (846)
..++.++...|++++|.+.|+++++ ..|+...+..+..++..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 77877677666655443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-06 Score=95.23 Aligned_cols=173 Identities=6% Similarity=-0.094 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAED----------WEKACALFLEMETNNIEPDSIACSALMRAFNKGG 666 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 666 (846)
..++|++.+++++... +-+..+|+.-..++...|+ ++++++.++++++.. +-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3467788888888753 2246777777777766666 888888888888742 335778888888888888
Q ss_pred --ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc--------
Q 003122 667 --QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR-DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS-------- 735 (846)
Q Consensus 667 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 735 (846)
+++++++.++++++.++. +..+|..-+.++...| .++++++.++++...+|. +..+|+..+.++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 668999999999988776 7888888888888888 888999999988888887 778888888887763
Q ss_pred ------CCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHH
Q 003122 736 ------GRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRK 775 (846)
Q Consensus 736 ------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 775 (846)
+.+++|.+.+++++. +.| |..+|+.+...+.+.|++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999 899 56689988888888888555
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.53 E-value=7.5e-07 Score=78.65 Aligned_cols=107 Identities=7% Similarity=-0.095 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+...+..+.+.|++++|+..|+++++..+..... ......| .+..+|.+++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-----------------------~a~~~~~-~~a~a~~n~g~al 67 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-----------------------EAFDHAG-FDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-----------------------SCCCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-----------------------hhhhhcc-chHHHHHHHHHHH
Confidence 345556666667777777777777777654431000 0000000 1234899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCC-------CcCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 733 GKSGRIESMMKLFFKIVSSGA-------EANFN-TY----SILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~-------~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+.|++++|+..++++++ + .|+.. .| +..+.+|...|++++|+..|+++++
T Consensus 68 ~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999 8 99654 88 9999999999999999999999987
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.53 E-value=6e-07 Score=97.58 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLK 765 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 765 (846)
...|..++.+|...|++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..++..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466777788888888888888888888777776 677888899999999999999999999998 8885 448888888
Q ss_pred HHHhcCCHHHHHH-HHHHHHH
Q 003122 766 NLLAAGNWRKYIE-VLQWMED 785 (846)
Q Consensus 766 ~~~~~g~~~~A~~-~~~~~~~ 785 (846)
++.+.|++++|.. .+++|..
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887764 4555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=78.42 Aligned_cols=61 Identities=11% Similarity=-0.056 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+|..++.+|...|++++|+..++++++ ..| +...|..++.+|...|++++|+..++++.+
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIE--KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHh--hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444555555555555555555554 444 233444445555555555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=9e-07 Score=84.05 Aligned_cols=129 Identities=9% Similarity=-0.008 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 618 ITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-D----------------SIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
..+..++..+...|++++|+..|++.++. .| + ..++..+..+|.+.|++++|+..++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555566666666666666666666652 11 1 25677778888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM-KLFFKIVS 750 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 750 (846)
..+. +...+..++.++...|++++|+..++++....|. +..++..++.++...++.+++. ..+.+++.
T Consensus 117 ~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 117 IDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6654 6777888888888888888888888888777776 6677778888887777777666 55555554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.4e-07 Score=81.42 Aligned_cols=114 Identities=11% Similarity=-0.059 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDI------TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLL 725 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 725 (846)
...+...+..+.+.|++++|+..|+++++.-. .|+...+ .. ..|. ...+|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~---~~~~-~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE---LDRK-NIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH---HHHT-HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH---HHHH-HHHHH
Confidence 34556666677777777777777777665300 0111100 00 0122 45678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
..++.+|.+.|++++|+..++++++ +.| +..+|..++.+|...|++++|+..++++++ +.|+..
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 8999999999999999999999999 888 466899999999999999999999999987 456543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-07 Score=100.41 Aligned_cols=116 Identities=7% Similarity=-0.040 Sum_probs=60.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 741 (846)
+.+.|++++|++.|+++++..+. +...+..++.+|...|++++|++.++++....|. +..+|..++.+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 44455555555555555554333 3445555555555555555555555555555444 445555666666666666666
Q ss_pred HHHHHHHHhcCCCcC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003122 742 MKLFFKIVSSGAEAN-FNTYSILLKN--LLAAGNWRKYIEVLQ 781 (846)
Q Consensus 742 ~~~~~~~~~~g~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 781 (846)
++.|+++++ +.|+ ...+..++.+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666 5552 3344445444 555566666666655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-06 Score=75.46 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSIL 763 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l 763 (846)
+..++..+...|++++|+..++++....|... ..++..++.++...|++++|+..|+++++ ..|+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS--RYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HCCCCcccHHHHHHH
Confidence 34556666677777777777777666555422 15677888888888888888888888888 6774 4467888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 003122 764 LKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+.+|...|++++|+..++++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.3e-07 Score=79.13 Aligned_cols=106 Identities=15% Similarity=0.007 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--------S-----IACSALMRAFNKGGQPSKVLLVAEFMREQDI 683 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (846)
...+...+..+.+.|++++|+..|++.++ +.|+ . ..|..+..++.+.|++++|+..++++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l-- 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY-- 86 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 45667788889999999999999999998 4454 1 25666666666666666666666665542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 684 TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLL----NQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 684 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
|.+..+.+|. +..+| ...+.++...|++++|+..|+++++ +.|
T Consensus 87 --------------------------~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p 133 (159)
T 2hr2_A 87 --------------------------FNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIE 133 (159)
T ss_dssp --------------------------HHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHH
T ss_pred --------------------------hhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCC
Confidence 2222223555 56677 8888999999999999999999988 777
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.1e-06 Score=75.60 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
+..++.++...|++++|+..++++....|. +..+|..++.+|...|++++|...|+++++ +.|
T Consensus 68 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p 130 (148)
T 2dba_A 68 HRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVS--LEP 130 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCS
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCC
Confidence 333333444444444444444443333333 334444555555555555555555555555 455
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.5e-07 Score=81.41 Aligned_cols=121 Identities=7% Similarity=-0.036 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
...+...+..+.+.|++++|+..|.+.+.. .+ ............ +..+. +. ....+..++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--~~----------~~~~~~~~~~~~--~~~~~---~~-~~~~~~nla~~ 72 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR--LD----------TLILREKPGEPE--WVELD---RK-NIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH----------HHHHTSCTTSHH--HHHHH---HT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HH----------HhcccCCCCHHH--HHHHH---HH-HHHHHHHHHHH
Confidence 567888999999999999999999999872 00 000011111110 01111 11 34556667777
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
|...|++++|+..++++...+|. ++.+|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 77777777777777777666666 667788888888888888888888888888 788543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.6e-07 Score=93.49 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACS 698 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 698 (846)
.+..++..+.+.|++++|+..|++++. +.|+... +...|+.+++...+. ...+..++.+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 344555556666666666666666655 3343321 112222233222111 124555666666
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHH-HHhcCCHHHH
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKN-LLAAGNWRKY 776 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~-~~~~g~~~~A 776 (846)
..|++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..++..|..+ ....+..+++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555554 455666666677777777777777777766 6663 3355555555 3344556666
Q ss_pred HHHHHHHHH
Q 003122 777 IEVLQWMED 785 (846)
Q Consensus 777 ~~~~~~~~~ 785 (846)
...|++|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 666666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=9.6e-07 Score=74.44 Aligned_cols=97 Identities=8% Similarity=-0.054 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HHHHHHH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FNTYSIL 763 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l 763 (846)
...+..++.++...|++++|+..++++....|. +..+|..++.++...|++++|.+.++++++ ..|+ ...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHH
Confidence 344555666666666677776666666655555 456677777777777888888888888877 6665 4477777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHC
Q 003122 764 LKNLLAA-GNWRKYIEVLQWMEDA 786 (846)
Q Consensus 764 ~~~~~~~-g~~~~A~~~~~~~~~~ 786 (846)
+.+|... |++++|++.++++.+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7778888 8888888888777653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.45 E-value=9.1e-07 Score=80.50 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSG----AEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
..++..++.++...|++++|.+.++++++.. ..+ ...++..++..|...|++++|...++++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456677888888888888888888877521 111 123677778888888888888888888765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-06 Score=91.90 Aligned_cols=169 Identities=11% Similarity=0.012 Sum_probs=143.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 631 EDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQ----------PSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 631 g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
...++|++.+++++. +.|+ ..+|+.-..++.+.|+ ++++++.++++++.+++ +..+|..-..++..
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 345788999999998 5565 6678888888888887 89999999999998887 88999999999999
Q ss_pred cC--CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhc-----
Q 003122 700 LR--DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG-RIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAA----- 770 (846)
Q Consensus 700 ~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~----- 770 (846)
.| +++++++.++++.+.+|. +..+|+..+.++...| .++++.+.++++++ ..| |..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccc
Confidence 99 789999999999999998 8899999999999999 99999999999999 999 677999999887774
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCC
Q 003122 771 ---------GNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRGG 807 (846)
Q Consensus 771 ---------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~ 807 (846)
+.+++|++.++++++ +.|+ ...|..+...+...+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 568999999999987 4564 4456666555555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.9e-06 Score=72.92 Aligned_cols=100 Identities=8% Similarity=-0.012 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSD---SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLH 730 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 730 (846)
..++..+...|++++|+..|+++++..+. +. ..+..++.++...|++++|+..++++....|... ..++..++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34555666777777777777777765443 22 4666777777777777777777777766665521 566778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 731 LLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 731 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
++...|++++|+..|+++++ ..|+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~--~~p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT--QYPGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHH--HCCCCh
Confidence 88888888888888888888 677543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.2e-06 Score=89.27 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=29.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 555 SSCCRLSRYSEALGFLDEMMDLKIPLTN----------------QVYSSVISAYSKQGLIAEAESMFNMMKM 610 (846)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (846)
..+.+.|++++|++.|.++++....... ..+..++..|...|++++|.+.+..+..
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455667777777777776654321110 1244455555555555555555555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-06 Score=91.80 Aligned_cols=86 Identities=10% Similarity=-0.018 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHH
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKN 766 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 766 (846)
..+..++.+|...|++++|+..++++....|. +..+|..++.+|...|++++|++.|+++++ +.| +...+..+..+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34444444445555555555555554444443 344455555555555555555555555555 444 23344444444
Q ss_pred HHhcCCHHHH
Q 003122 767 LLAAGNWRKY 776 (846)
Q Consensus 767 ~~~~g~~~~A 776 (846)
+...|+.+++
T Consensus 351 ~~~~~~~~~a 360 (370)
T 1ihg_A 351 KQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=5.4e-07 Score=79.36 Aligned_cols=94 Identities=11% Similarity=0.026 Sum_probs=60.1
Q ss_pred CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhc
Q 003122 702 DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR----------IESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAA 770 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 770 (846)
.+++|+..+++....+|. +..+|..++.++...|+ +++|+..|+++++ ++|+ ..+|+.++.+|...
T Consensus 17 ~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHh
Confidence 344444444444444444 44444445554444443 4688888888888 8884 45888888888776
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 003122 771 G-----------NWRKYIEVLQWMEDAGIQPSYGMFRDIVS 800 (846)
Q Consensus 771 g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 800 (846)
| ++++|+..|+++++ +.|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 4 78888888888887 6777665544433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-06 Score=78.24 Aligned_cols=101 Identities=10% Similarity=-0.023 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA---N----FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PS--- 791 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~--- 791 (846)
.++..++..+...|++++|...++++++ +.+ + ..++..++.+|...|++++|+..++++.+.... .+
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence 4677889999999999999999999887 333 1 347888899999999999999999998764111 12
Q ss_pred -HHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhcc
Q 003122 792 -YGMFRDIVSFAQTRGGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 792 -~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~ 825 (846)
...+..++..+...|+.++|...+++..++.++.
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 2256777888899999999999999998887654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.3e-07 Score=77.11 Aligned_cols=84 Identities=11% Similarity=-0.042 Sum_probs=56.0
Q ss_pred cCCHHHHHHHHHhhccC---CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHH
Q 003122 700 LRDWKTTIDLIKQMEPS---FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRK 775 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 775 (846)
.|++++|+..++++... .|. +..++..++.+|...|++++|+..|+++++ ..| +..++..++.+|...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHH
Confidence 34455555555555444 233 456677777788888888888888888877 777 35577777777888888888
Q ss_pred HHHHHHHHHHC
Q 003122 776 YIEVLQWMEDA 786 (846)
Q Consensus 776 A~~~~~~~~~~ 786 (846)
|+..++++++.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888777663
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-06 Score=94.37 Aligned_cols=119 Identities=11% Similarity=-0.055 Sum_probs=75.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003122 589 ISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQ 667 (846)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 667 (846)
+..+.+.|++++|++.|+++++.. +.+...|..++.+|.+.|++++|+..++++++. .| +..++..++.+|.+.|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 344566777777777777777642 224667777777777777777777777777763 33 35666777777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLA--CSLLRDWKTTIDLIK 711 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 711 (846)
+++|++.|+++++..+. +...+..++.+ +...|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777765544 33444445544 666677777777766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3e-06 Score=92.05 Aligned_cols=130 Identities=8% Similarity=-0.007 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD----------------SIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
...|..++..|.+.|++++|+..|+++++. .|+ ..+|..+..+|.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344555555566666666666666666552 222 46778888888889999999999998888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHH-HHHHHHh
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMK-LFFKIVS 750 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 750 (846)
.++. +...++.++.+|...|++++|+..++++....|. +..++..++.++...|+.++|.+ .+.+++.
T Consensus 346 ~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7765 6788888888999999999999999988888877 66788888888888888887764 4455543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.6e-07 Score=92.04 Aligned_cols=149 Identities=11% Similarity=-0.032 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..+...+.+.|++++|+..|+++++..+ +.. .+...|+++++...+. ..+|..++.+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 3566788888999999999999999998543 222 1234455555554332 23788999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHH-HHhcCCcc
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSF-AQTRGGAE 809 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~-~~~~~~~~ 809 (846)
.+.|++++|+..++++++ +.| +..+|+.++.+|...|++++|+..|+++++ +.|+.. .+..+... ....+..+
T Consensus 241 ~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 889 566999999999999999999999999976 556544 44455444 23355667
Q ss_pred hHHHHHHHHHHHhhc
Q 003122 810 YAAIIQERIESLRMK 824 (846)
Q Consensus 810 ~a~~~~~~l~~l~~~ 824 (846)
.+...|+++..+.+.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 788888887766544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.7e-07 Score=76.43 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=66.5
Q ss_pred hcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 664 KGGQPSKVLLVAEFMREQD---ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
..|++++|+..|+++++.+ +. +...+..++.+|...|++++|+..++++....|. +..++..++.+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHH
Confidence 3577788888888887753 22 4556777788888888888888888888777777 57788888888888899999
Q ss_pred HHHHHHHHHhcCCCcCH
Q 003122 741 MMKLFFKIVSSGAEANF 757 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~~ 757 (846)
|+..++++++ ..|+.
T Consensus 80 A~~~~~~al~--~~p~~ 94 (117)
T 3k9i_A 80 GVELLLKIIA--ETSDD 94 (117)
T ss_dssp HHHHHHHHHH--HHCCC
T ss_pred HHHHHHHHHH--hCCCc
Confidence 9999988888 66743
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=85.02 Aligned_cols=197 Identities=8% Similarity=0.008 Sum_probs=144.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC
Q 003122 519 IGSYMNVGEYEKAIALYKCMKKRKVMPD----------------SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIP-LT 581 (846)
Q Consensus 519 i~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 581 (846)
...+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+.+.++....-. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 5567889999999999999988642221 124677899999999999999999988753111 12
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 003122 582 N----QVYSSVISAYSKQGLIAEAESMFNMMKM----SGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETN--NI-- 648 (846)
Q Consensus 582 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~-- 648 (846)
. .+.+.+...+...|+++.|..+++.... .+..+. ..++..|+..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334445555667899999999988765 222233 567888999999999999999999998752 22
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 649 EPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQ--DI-TF---SDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 649 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
.+. ..++..++..|...|++++|..+++++... .. .| -...+..++..+...|++++|...+.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222 457888899999999999999999988752 11 11 124566777788889999999988887753
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.4e-06 Score=69.19 Aligned_cols=96 Identities=13% Similarity=0.022 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 003122 584 VYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP--DSIACSALMRA 661 (846)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~ 661 (846)
.+..++..+...|++++|...|+++.+.. +.+...|..++..+...|++++|+..|+++.+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444444555555555555555554432 2234445555555555555555555555555421 11 24444455555
Q ss_pred HHhc-CChhHHHHHHHHHHHC
Q 003122 662 FNKG-GQPSKVLLVAEFMREQ 681 (846)
Q Consensus 662 ~~~~-g~~~~A~~~~~~~~~~ 681 (846)
+.+. |++++|++.++++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=77.45 Aligned_cols=92 Identities=8% Similarity=-0.103 Sum_probs=59.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 666 GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD----------WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 666 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
+.+++|+..++++++.++. +...+..++.++...++ +++|+..|+++...+|. ...+|..++.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 3445555555555554443 44445545555544443 34777777777766666 556677777777665
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCcCHHHHH
Q 003122 736 -----------GRIESMMKLFFKIVSSGAEANFNTYS 761 (846)
Q Consensus 736 -----------g~~~~A~~~~~~~~~~g~~p~~~~~~ 761 (846)
|++++|++.|+++++ ++|+...|.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~ 128 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL 128 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHH
Confidence 589999999999999 999876553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.28 E-value=4.8e-06 Score=87.34 Aligned_cols=131 Identities=8% Similarity=-0.023 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
...+..+...+.+.|++++|+..|+++++.... .. ..... +......|. ...+|..++.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~~----------~~~~~-------~~~~~~~~~-~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--SR----------AAAED-------ADGAKLQPV-ALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HH----------HHSCH-------HHHGGGHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--Cc----------cccCh-------HHHHHHHHH-HHHHHHHHHHH
Confidence 345666677777777777777777777652100 00 00011 111112233 56789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRG 806 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~ 806 (846)
|.+.|++++|++.++++++ +.| +..+|..++.+|...|++++|+..++++.+ +.|+ ......+...+...+
T Consensus 283 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 899 466999999999999999999999999988 4564 444555555444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-06 Score=73.77 Aligned_cols=92 Identities=9% Similarity=-0.130 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-------HHH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-------FNT 759 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~ 759 (846)
...+..++..+...|++++|+..++++....|. +..+|..++.+|...|++++|++.++++++ +.|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHH
Confidence 344555566666666666666666666555555 456666777777777777777777777776 6664 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 003122 760 YSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
+..++.++...|++++|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 5566666666666665554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=68.51 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
..+|..++.+|...|++++|+..|+++++ +.|+ ...|..++.+|...|++++|+..++++.+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444444 4442 23444444444444444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.2e-05 Score=81.92 Aligned_cols=131 Identities=9% Similarity=-0.058 Sum_probs=92.9
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 627 YNTAEDWEKACALFLEMETN---NIEPD----SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
+...|++++|+.++++.++. -+.|+ ..+++.|+.+|...|++++|+.+++++++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i------------------ 380 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG------------------ 380 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------
Confidence 45678888888888887651 12232 447788888888888888888888777641
Q ss_pred cCCHHHHHHHHHhh-ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCcCH---H-HHHHHHHHHHhcC
Q 003122 700 LRDWKTTIDLIKQM-EPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS---GAEANF---N-TYSILLKNLLAAG 771 (846)
Q Consensus 700 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~---~-~~~~l~~~~~~~g 771 (846)
+++. .+..|. ....+++|+.+|...|++++|+.+++++++. -+.||. . +...|..++..+|
T Consensus 381 ----------~~~~lG~~Hp~-~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 381 ----------YMKLYHHNNAQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp ----------HHHHSCTTCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHcCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 1111 122232 4566788999999999999999999988751 133432 2 5667777899999
Q ss_pred CHHHHHHHHHHHHHC
Q 003122 772 NWRKYIEVLQWMEDA 786 (846)
Q Consensus 772 ~~~~A~~~~~~~~~~ 786 (846)
++++|..+|+++.+.
T Consensus 450 ~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 450 MFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999774
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.8e-05 Score=63.84 Aligned_cols=83 Identities=10% Similarity=-0.039 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 669 SKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKI 748 (846)
Q Consensus 669 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 748 (846)
++|+..|+++++.++. +...+..++.++...|++++|+..++++....|. ...+|..++.+|...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4788999999987765 7888999999999999999999999999988887 6788999999999999999999999999
Q ss_pred HhcCCCc
Q 003122 749 VSSGAEA 755 (846)
Q Consensus 749 ~~~g~~p 755 (846)
++ +.|
T Consensus 80 l~--~~~ 84 (115)
T 2kat_A 80 LA--AAQ 84 (115)
T ss_dssp HH--HHH
T ss_pred HH--hcc
Confidence 98 666
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-05 Score=62.70 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++..++..+...|++++|+..|+++++ ..| +..++..++.+|...|++++|+..++++.+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444444444444444444444 334 223444444444444444444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.5e-05 Score=64.13 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=54.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++.+|..++.+|...|++++|+..|+++++ +.|+ ..+|..++.+|...|++++|+..++++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567788899999999999999999999998 8884 55888889999999999999999988875
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.5e-05 Score=63.90 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=60.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
+...|..++..+...|++++|++.|+++++ +.| +...|..++.+|...|++++|+..++++++ +.|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCc
Confidence 456788999999999999999999999999 888 566999999999999999999999999987 45653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00013 Score=64.01 Aligned_cols=110 Identities=10% Similarity=-0.041 Sum_probs=60.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHH
Q 003122 667 QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----SGRIESMM 742 (846)
Q Consensus 667 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 742 (846)
++++|+.+|+++.+.|.. . .. ++..|...+..++|++++++....+ ++.++..|+.+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344455555555544411 1 11 4444444444555555555544332 33455566666655 56777777
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 003122 743 KLFFKIVSSGAEANFNTYSILLKNLLA----AGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 743 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 787 (846)
+.|+++.+. -+..++..|+..|.. .+++++|+.+++++.+.|
T Consensus 82 ~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777662 345566666777666 667777777777776654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00038 Score=61.01 Aligned_cols=110 Identities=11% Similarity=-0.011 Sum_probs=58.2
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003122 562 RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT----AEDWEKAC 637 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 637 (846)
++++|+..|++..+.+ .+... |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 22221 4444555555555555555555532 45555555555554 55566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 003122 638 ALFLEMETNNIEPDSIACSALMRAFNK----GGQPSKVLLVAEFMREQD 682 (846)
Q Consensus 638 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 682 (846)
.+|++..+.| +...+..|...|.. .++.++|+.+|+++.+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 34455555555555 555666666666655544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=6e-05 Score=81.42 Aligned_cols=102 Identities=10% Similarity=-0.072 Sum_probs=77.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC---cCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSS---GAE---ANFN-TYSILLKNLLAAGNWRKYIEVLQWMEDA---GIQP 790 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~---p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p 790 (846)
...++++|+.+|...|++++|+.+++++++. -+. |+.. +++.|+.+|..+|++++|+.+++++++. -+-|
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567889999999999999999999998752 122 3333 8999999999999999999999998652 1224
Q ss_pred CHH----hHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 003122 791 SYG----MFRDIVSFAQTRGGAEYAAIIQERIESLR 822 (846)
Q Consensus 791 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~l~~l~ 822 (846)
|-. +...+.......+.+++|+..|.++.+-.
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 34555677777888999999999887633
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00014 Score=58.08 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILL 764 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 764 (846)
+...+..++..+...|++++|+..++++....|. +..++..++.++...|++++|...++++++ +.| +...+..++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 4567888999999999999999999999888877 678899999999999999999999999999 888 566888888
Q ss_pred HHHHhcC
Q 003122 765 KNLLAAG 771 (846)
Q Consensus 765 ~~~~~~g 771 (846)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 8887655
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.79 E-value=8.1e-05 Score=61.04 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+...+..++.++...|++++|+..++++....|. +..+|..++.+|...|++++|++.|+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666777777777777777777777666666 556777788888888888888888888877
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00073 Score=68.42 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=60.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMF 795 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 795 (846)
++.+|..++..+...|++++|+..+++++. ++|+...|..++..+.-.|++++|++.++++.. +.|...++
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~--Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGID--LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 677888888888888999999999999999 778877888888889999999999999999887 57776653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00022 Score=75.60 Aligned_cols=65 Identities=14% Similarity=0.001 Sum_probs=53.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSS-----G-AEANFN-TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
...++++|+.+|...|++++|+.+++++++. | -.|+.. +|+.|+.+|..+|++++|+.+++++++
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4567888999999999999999999998751 1 123433 899999999999999999999999875
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00049 Score=73.15 Aligned_cols=92 Identities=10% Similarity=0.008 Sum_probs=66.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSS-----G-AEANFN-TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
...++++|+.+|...|++++|+.+++++++. | ..|+.. +++.|+..|..+|++++|+.+++++++.
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i------- 400 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI------- 400 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Confidence 3567889999999999999999999998751 1 123333 8999999999999999999999998751
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhhcc
Q 003122 794 MFRDIVSFAQTRGGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 794 ~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~ 825 (846)
... .-..+|+...++++.+.+....+
T Consensus 401 -----~~~-~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 401 -----MRV-THGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp -----HHH-HTCTTSHHHHHHHHHHHHHHHHH
T ss_pred -----HHH-hcCCCChHHHHHHHHHHHHHHHH
Confidence 111 11235677777777776655443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00075 Score=53.96 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=55.0
Q ss_pred chhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 721 SIGLLNQLLHLLGKSGR---IESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
++.++..++.++...++ .++|...++++++ ++|+ ..+...++..+.+.|++++|+..|+++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788888888865554 7999999999999 9995 558888899999999999999999999875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.01 Score=57.44 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhccCCCcc-chhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHh-cCCH
Q 003122 703 WKTTIDLIKQMEPSFHVV-SIGLLNQLLHLLGK-----SGRIESMMKLFFKIVSSGAEAN--FNTYSILLKNLLA-AGNW 773 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~-~g~~ 773 (846)
..+|...++++.+.+|.. +-.+|..|+..|.. -|+.++|++.|+++++ +.|+ ..+++.++..|+. .|++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCH
Confidence 567888889988888874 34578899999988 4999999999999999 9994 6689899999888 4999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHhHH
Q 003122 774 RKYIEVLQWMEDAGIQ--PSYGMFR 796 (846)
Q Consensus 774 ~~A~~~~~~~~~~g~~--p~~~~~~ 796 (846)
++|...+++++..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9999999999997666 5544333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00019 Score=58.53 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=24.3
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHVVSIG-LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.+...|++++|+..++++....|. +.. +|..++.+|...|++++|++.|+++++
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444443333 333 444444444444444444444444444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00017 Score=58.86 Aligned_cols=58 Identities=22% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEP-DSI-ACSALMRAFNKGGQPSKVLLVAEFMREQDI 683 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (846)
+..+...|++++|+..|+++++. .| +.. .+..++.+|...|++++|+..|+++++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 33444455555555555555542 22 233 444555555555555555555555555433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0053 Score=62.20 Aligned_cols=74 Identities=9% Similarity=-0.053 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSIL 763 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 763 (846)
+..++..++..+...|++++|+..++++...+| +...|..++..+...|+.++|.+.|++++. +.|...+|...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~--s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM--SWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 667777777777778999999999999887775 566778889999999999999999999999 99987776543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0022 Score=55.67 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=53.3
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-c-C-HHHHHHHHHHHHhcCCHHHHHH
Q 003122 705 TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG---RIESMMKLFFKIVSSGAE-A-N-FNTYSILLKNLLAAGNWRKYIE 778 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~-p-~-~~~~~~l~~~~~~~g~~~~A~~ 778 (846)
.+.+.|.+....++. +..+...+++++.+++ ++++++.+++++++ .. | + ...++.|+-+|++.|++++|..
T Consensus 16 ~~~~~y~~e~~~~~~-~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~--~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSV-SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTCC-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444333442 5666667777777776 66677777777777 44 5 2 3366667777777777777777
Q ss_pred HHHHHHHCCCCCCH
Q 003122 779 VLQWMEDAGIQPSY 792 (846)
Q Consensus 779 ~~~~~~~~g~~p~~ 792 (846)
+++++++ ++|+.
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 7777776 56654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0023 Score=55.58 Aligned_cols=87 Identities=15% Similarity=0.024 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhccCC-CccchhhHHHHHHHHHhcCCHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR---DWKTTIDLIKQMEPSF-HVVSIGLLNQLLHLLGKSGRIESMMK 743 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 743 (846)
...+.+.|.+..+.++ ++..+.+.++.++.+++ +.++++.+++.+.... |.....++..|+-+|.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445666666666665 47788888888888877 5668888888877666 53356788899999999999999999
Q ss_pred HHHHHHhcCCCcCH
Q 003122 744 LFFKIVSSGAEANF 757 (846)
Q Consensus 744 ~~~~~~~~g~~p~~ 757 (846)
+++++++ .+|++
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 9999999 99954
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0033 Score=66.63 Aligned_cols=93 Identities=8% Similarity=-0.148 Sum_probs=64.9
Q ss_pred hcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 629 TAEDWEKACALFLEMET---NNIEPD----SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~---~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
..|++++|+.++++.++ .-+.|+ ..+++.|+.+|...|++++|+.+++++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 34678888888887765 112333 457888888899999999999888887751
Q ss_pred CHHHHHHHHHhh-ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 702 DWKTTIDLIKQM-EPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 702 ~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+++. .+..|. ....+++|+.+|...|++++|+.+++++++
T Consensus 370 --------~~~~lG~~Hp~-~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 370 --------YSKHYPVYSLN-VASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp --------HHHHSCSSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHcCCCChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1111 122222 455678888888888999998888888876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.024 Score=54.91 Aligned_cols=110 Identities=4% Similarity=-0.061 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc-----CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc-CCHHH
Q 003122 668 PSKVLLVAEFMREQDITF-SDSIFFEMVLACSLL-----RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS-GRIES 740 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 740 (846)
...|...++++++.++.- +...|..++..|... |+.++|.+.|+++...+|.-++.++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 366788888888865431 256788888888884 99999999999999999875678888999999885 99999
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
|.+++++++. ..|....-.. +...+.-++|..++.++
T Consensus 259 a~~~L~kAL~--a~p~~~P~~~----lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 259 FDEALDRALA--IDPESVPHNK----LLVILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHH--CCGGGCSSCH----HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHc--CCCCCCCChh----HHHHHHHHHHHHHHHHh
Confidence 9999999999 6664211111 22233445666555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0092 Score=63.31 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=63.6
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 627 YNTAEDWEKACALFLEMETN---NIEPD----SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
+...|++++|+.++++.++. -+.|+ ..+++.|+.+|...|++++|+.+++++++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i------------------ 358 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP------------------ 358 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh------------------
Confidence 44567788888888777752 12233 346777777788888888888877776641
Q ss_pred cCCHHHHHHHHHhh-ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 700 LRDWKTTIDLIKQM-EPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 700 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+++. .+..|. ....+++|+..|...|++++|+.+++++++
T Consensus 359 ----------~~~~lg~~Hp~-~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 359 ----------YRIFFPGSHPV-RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------HHHHSCSSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHcCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1111 122222 455678888889999999999988888875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0032 Score=50.24 Aligned_cols=68 Identities=9% Similarity=-0.029 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 686 SDSIFFEMVLACSLLRD---WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+...+..++.++...++ .++|..+++++...+|. ++.++..++..+.+.|++++|+..|+++++ ..|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~--~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD--SNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--CCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 44455555555443333 45555555555555555 555566666666666666666666666666 5554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.051 Score=63.71 Aligned_cols=188 Identities=17% Similarity=0.077 Sum_probs=105.3
Q ss_pred HhcCCHHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 523 MNVGEYEKAIA-LYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 523 ~~~g~~~~A~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 601 (846)
...+++++|.+ ++.. .++......++..+.+.|..++|.++.++.. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 35677777765 4321 1112223566666777777777776553211 112334567888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ 681 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (846)
.++.+.+ .+...|..|...+.+.++++.|.+.|.++.+ |..+...|...|+.+....+.+.+...
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8775432 3677888888888888888888888887753 444555555566666655555444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH----
Q 003122 682 DITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF---- 757 (846)
Q Consensus 682 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---- 757 (846)
|- +.....++...|++++|+++ |.+.+++++|..+.++ ..|..
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~----------------------~~~~~~~~~A~~lA~~-----~~~~~~~i~ 783 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDL----------------------LIKSQRFSEAAFLGST-----YGLGDNEVN 783 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHH----------------------HHHTTCHHHHHHHHHH-----TTCCHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHH----------------------HHHcCChHHHHHHHHH-----hCCChHHHH
Confidence 31 11122234445555555544 3445666777666554 33433
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 003122 758 NTYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A 776 (846)
.........+...|+.+.|
T Consensus 784 ~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 784 DIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHhccchhHH
Confidence 2334444455566654333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0061 Score=49.98 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCC------CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSF------HVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
..-+..++..+...|+++.|+.+++.+.... ......++..|+.+|.+.|+++.|...++++++ +.|+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3344455555555555555555555543211 122456677777777777777777777777777 77744
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.019 Score=46.87 Aligned_cols=72 Identities=7% Similarity=-0.014 Sum_probs=58.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG-----AEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGM 794 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 794 (846)
++.-+..+|..+...|+++.|...|+++++.- ..+ ...++..|+.+|.+.|++++|+..++++.+ +.|+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 34456689999999999999999999998731 012 345899999999999999999999999987 5676543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.013 Score=48.78 Aligned_cols=82 Identities=15% Similarity=0.004 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhhccCC-CccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 003122 671 VLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT---TIDLIKQMEPSF-HVVSIGLLNQLLHLLGKSGRIESMMKLFF 746 (846)
Q Consensus 671 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 746 (846)
+.+.|......|. ++..+-+.++.++.++.+..+ ++.+++.+.... |...-.++..|+-++.+.|++++|++.++
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444443333 345555555555555544433 555555544443 22233444455555555555555555555
Q ss_pred HHHhcCCCc
Q 003122 747 KIVSSGAEA 755 (846)
Q Consensus 747 ~~~~~g~~p 755 (846)
.+++ .+|
T Consensus 99 ~lL~--~eP 105 (126)
T 1nzn_A 99 GLLQ--TEP 105 (126)
T ss_dssp HHHH--HCT
T ss_pred HHHH--hCC
Confidence 5555 555
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.14 Score=59.79 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMK 539 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 539 (846)
+...|..+...+.+.|+++.|.+.|..+.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 44556666666666666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.086 Score=43.88 Aligned_cols=91 Identities=8% Similarity=0.012 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCC-c-C-HHHHHHHHHHHHhcCCHHHH
Q 003122 703 WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES---MMKLFFKIVSSGAE-A-N-FNTYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~-p-~-~~~~~~l~~~~~~~g~~~~A 776 (846)
...+.+.+.+....++ ++..+-..+++++.++.+... ++.+++.+++ .. | + ....+.|+-++++.|+|++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555544344 367788899999999886555 9999999998 44 5 2 33677788889999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHH
Q 003122 777 IEVLQWMEDAGIQPSYGMFRDI 798 (846)
Q Consensus 777 ~~~~~~~~~~g~~p~~~~~~~l 798 (846)
...++.+++ ++|+......|
T Consensus 94 ~~~~~~lL~--~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHH--hCCCCHHHHHH
Confidence 999999998 67876544444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.13 Score=42.91 Aligned_cols=78 Identities=10% Similarity=-0.046 Sum_probs=53.8
Q ss_pred CCccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 717 FHVVSIGLLNQLLHLLGKSG---RIESMMKLFFKIVSSGAEAN--FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 717 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
.+.+++.+-..+++++.++. +..+++.+++.+.+ ..|. ...++.|+-++++.|++++|....+.+++ +.|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~--~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 44556667777788887765 45567888888877 4462 33666677778888888888888888876 5676
Q ss_pred HHhHHHH
Q 003122 792 YGMFRDI 798 (846)
Q Consensus 792 ~~~~~~l 798 (846)
......|
T Consensus 111 N~QA~~L 117 (134)
T 3o48_A 111 NKQVGAL 117 (134)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6544433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.84 Score=40.61 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=68.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 415 NAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKV 494 (846)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 494 (846)
....+.|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445678888887777665 2677788888888888888888888877543 334455555667766
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 495 NIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCM 538 (846)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 538 (846)
+..++-......| -++.....+...|++++++++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 6666655555543 1344455566678888877777554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.06 Score=60.45 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 725 LNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 725 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
+..=+..|...|+++-|.++.++++. +.| +..+|..|+.+|...|+|+.|+-.++-+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33445667778999999999999999 899 5779999999999999999999988876
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.84 Score=40.62 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=20.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 277 NGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSM 326 (846)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 326 (846)
..|+++.|.++.+++ .+...|..|.+...+.|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444433 13344444444444455555444444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.34 Score=41.01 Aligned_cols=72 Identities=11% Similarity=-0.029 Sum_probs=49.5
Q ss_pred ccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCcC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 719 VVSIGLLNQLLHLLGKSG---RIESMMKLFFKIVSSGAEAN-F-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.++..+-..+++++.++. +..+++.+++.+.. ..|+ . ...+.|+-++++.|+|++|..+.+.+++ ++|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 346666667777777765 55567778888777 4552 2 2555666778888888888888888877 567654
Q ss_pred h
Q 003122 794 M 794 (846)
Q Consensus 794 ~ 794 (846)
.
T Consensus 112 Q 112 (144)
T 1y8m_A 112 Q 112 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.07 E-value=6.5 Score=45.18 Aligned_cols=259 Identities=8% Similarity=0.045 Sum_probs=124.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHH
Q 003122 415 NAYGRSQQPVKAREVFNMMRINN--LKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGI--E-----PNIVSICTLLA 485 (846)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~-----~~~~~~~~ll~ 485 (846)
-+....|+.++++.+++.....+ -.+....-..+.-+....|..+++..++...+...- . +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34566778888877776654321 111222333344445555655677777777665321 0 11111122222
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCccCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHhc
Q 003122 486 ACGRCGR-KVNIDAVLLAAEMRDIKLNT--VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTV--LISSCCRL 560 (846)
Q Consensus 486 ~~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--li~~~~~~ 560 (846)
++.-.|. -+++...+..+...+-. .. .+-.++...++..|+-+....++..+.+.. +...... +.-++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 2222232 23444444444443211 11 112233334556677666666776666531 2233222 33344467
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 561 SRYSEALGFLDEMMDLKIPLTNQV--YSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 561 g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
|+.+.+..+.+.+.... .|.... -.+++-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 78787777777776531 122211 1234456677788766666777777631 1223322333333444555555566
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 003122 639 LFLEMETNNIEPDSIACSALMRAFNKGGQP-SKVLLVAEFMRE 680 (846)
Q Consensus 639 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 680 (846)
+++.+.+.+ .|...--..+.-+....|+. .+|+..+..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 665555432 23322222333334444544 467777777764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.00028 Score=72.45 Aligned_cols=431 Identities=12% Similarity=0.130 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 003122 196 ETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAY 275 (846)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 275 (846)
..|..|..+..+.|+..+|++.|- +. -|...|..++.+..+.|++++-.+.+....+.. .+...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 346666666666666666665542 22 266778889999999999998888877666543 2445556788889
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 276 KNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIEN 355 (846)
Q Consensus 276 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 355 (846)
++.++..+-.+++ . .||..-...+.+-|...|.++.|.-+|..+. -|..|...+.+.|++..
T Consensus 127 Ak~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 127 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----------CCTTTSSSSSSCSGGGS
T ss_pred HhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----------cHHHHHHHHHHHHHHHH
Confidence 8888865533322 2 3666667788888888888888887775542 24556666777888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003122 356 CKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRI 435 (846)
Q Consensus 356 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 435 (846)
|.+.-++ .-++.+|..+-.+|...+.+.-|.-.--.+.-. +| -...|+..|-..|.+++-+.+++.-..
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 7664333 235568888888999988887776554444421 11 233467778888999998888887764
Q ss_pred CCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHH
Q 003122 436 NNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAY 515 (846)
Q Consensus 436 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 515 (846)
.. ......|+-|.-.|++- ..++-++.++..-.+---| .++.+|....-+.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip------KviracE~ahLW~--------------------- 308 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP------KVLRAAEQAHLWA--------------------- 308 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT------TTHHHHTTTTCHH---------------------
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH------HHHHHHHHHhhHH---------------------
Confidence 32 45677788887777764 3444444443322210012 2344443333333
Q ss_pred HHHHHHHHhcCCHHHHHH-------------HHHHHhhCCCCCCHHHHHHHHHHHH---------------hcCCHhHHH
Q 003122 516 NSAIGSYMNVGEYEKAIA-------------LYKCMKKRKVMPDSVTYTVLISSCC---------------RLSRYSEAL 567 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~-------------~~~~~~~~~~~p~~~~~~~li~~~~---------------~~g~~~~A~ 567 (846)
.++-.|++-.++|.|.. .|.++..+ ..|...|...|..|. ..=+.....
T Consensus 309 -ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV 385 (624)
T 3lvg_A 309 -ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAV 385 (624)
T ss_dssp -HHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTH
T ss_pred -HHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHH
Confidence 33333333333333321 11111111 123333333333222 222223333
Q ss_pred HHHHHHHH----------CCCCCCHHHHHHHHHHHHhcCCHHHHHH------------HHHHHHHcCCCCCHHHHHHHHH
Q 003122 568 GFLDEMMD----------LKIPLTNQVYSSVISAYSKQGLIAEAES------------MFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 568 ~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~------------~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
+++.+.-. ..-..+..+-.++-+.|....+++.-.. +-+++.++ +-...-..-..
T Consensus 386 ~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~ 462 (624)
T 3lvg_A 386 NYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAY 462 (624)
T ss_dssp HHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHH
Confidence 33332110 0012344555566666777766554322 22222221 12333344445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
.|.+.++|++++.+.++= ++ |.-.+.....+|+.+-|.++++-.++.| +.+.|...+..|...=+.+.
T Consensus 463 LYkkn~rw~qsi~l~KkD---kl------ykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDv 530 (624)
T 3lvg_A 463 LFKGNNRWKQSVELCKKD---SL------YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDV 530 (624)
T ss_dssp HHHTTCHHHHHSSCSSTT---CC------TTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHH
T ss_pred HHHhcccHHHHHHHHHhc---cc------HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHH
Confidence 567777777776543321 12 2222344556777777888888777765 45666666666666666666
Q ss_pred HHHHH
Q 003122 706 TIDLI 710 (846)
Q Consensus 706 A~~~~ 710 (846)
++++-
T Consensus 531 VlEla 535 (624)
T 3lvg_A 531 VLETA 535 (624)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=1.5 Score=36.58 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
.-+..+...|+.++-.+++..++. ...|++.....++.+|.+.|+..+|.+++.++-+.|++
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444555666666666666666433 14456666777777777777777777777777776653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.16 Score=42.48 Aligned_cols=74 Identities=12% Similarity=-0.030 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 682 DITFSDSIFFEMVLACSLLRDW---KTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 682 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
+..|+..+-+..+.++.++.+. .+++.+++.+....|...-.++..|+-++.+.|++++|+++.+.+++ .+|++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4566777777888888777654 46788888877766655677888999999999999999999999999 89954
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.42 Score=40.78 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchh
Q 003122 650 PDSIACSALMRAFNKGGQP------SKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIG 723 (846)
Q Consensus 650 p~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 723 (846)
-|..+|-..+....+.|++ ++.+++|++++..- +|+.. +.|+. -+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~------------~~wrr---------------YI~ 62 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKY------------GQNES---------------FAR 62 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGG------------TTCHH---------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-Ccccc------------ccHHH---------------HHH
Confidence 3566777777777777777 66777777777642 22211 01110 112
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP 790 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 790 (846)
+|...+.. ...++.++|+++|+.+++. ... ...|...+..-.++|+...|.+++.+++..+.+|
T Consensus 63 LWIrYA~~-~ei~D~d~aR~vy~~a~~~--hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 63 IQVRFAEL-KAIQEPDDARDYFQMARAN--CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHH-HHHHCGGGCHHHHHHHHHH--CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 22222222 3447888999999999873 232 4477777777788999999999999998766444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.48 Score=40.15 Aligned_cols=73 Identities=12% Similarity=-0.031 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 683 ITFSDSIFFEMVLACSLLRDW---KTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
..|+..+-+..+.++.++.+. .+++.+++.+....|...-.++..|+-++.+.|++++|+++.+.+++ .+|++
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 356777777788888777654 46778888877766655677888899999999999999999999999 99954
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.35 Score=41.23 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHhcCChhHHHHHHHHHHH
Q 003122 614 SPDVITYTAMLHAYNTAEDW------EKACALFLEMETNNIEPDSI----ACSALMR---AFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~----~~~~l~~---~~~~~g~~~~A~~~~~~~~~ 680 (846)
+-|..+|-..+...-+.|+. ++.+++|+++... ++|+.. .|..|-- .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34688999999998888998 8899999999875 666521 1211111 12233555666666665554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.. .. -..+|...+..-.++|++..|++++.+++.
T Consensus 89 ~h-----------------------------------Kk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 89 NC-----------------------------------KK-FAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HC-----------------------------------TT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh-----------------------------------HH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 31 11 134555666666667777777777777776
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.74 E-value=3.1 Score=43.99 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHH
Q 003122 586 SSVISAYSKQGLIAEAESMFNMMKM--SGCSPD---VITYTAMLHAYNTAEDWEKACALFLEMET----NNIEPD--SIA 654 (846)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~--~~~ 654 (846)
..|...|...|++.+|..++..+.. .|.... ...+...+..|...+++.+|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3455556666666666666666543 121111 23444555556666666666666665431 111122 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (846)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444555556666666665555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=1 Score=46.88 Aligned_cols=122 Identities=7% Similarity=-0.010 Sum_probs=83.7
Q ss_pred hcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 664 KGGQPSKVLLVAEFMREQ--DITFSDSIFFEMVLACSLLRDWKTT-IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
..|+.+.|...+++++.. |.-..... ...|-.+ ...++.. -..+...++..+...|+.++
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~----------~~~w~~~~r~~l~~~-------~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLR----------DFQFVEPFATALVED-------KVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGT----------TSTTHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCC----------chhHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHH
Confidence 457888888888888763 32211100 0122111 1222221 12244577788889999999
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHhHHHHHHHHHh
Q 003122 741 MMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED-----AGIQPSYGMFRDIVSFAQT 804 (846)
Q Consensus 741 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l~~~~~~ 804 (846)
|...+.+++. ..| +-..|..|+.+|...|+..+|++.|++..+ .|+.|++.+-......+..
T Consensus 190 a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~ 257 (388)
T 2ff4_A 190 VIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ 257 (388)
T ss_dssp HHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcC
Confidence 9999999999 899 677999999999999999999999988644 5999998765444444444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.19 E-value=3.2 Score=34.57 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 754 (846)
+.+.+...++.+..+|+.++-.+++..+....+. ++.++..++.+|.+.|+..+|.+++.++-++|+.
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~-~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEV-SASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCC-ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3444555556667777777777777775433332 5667778888888888888888888888887754
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.7 Score=40.37 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
.+.-+.++.+|...+++++|+..++.++...-
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R 153 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQR 153 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc
Confidence 34555677777777888888877777654433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.30 E-value=9.7 Score=37.83 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=13.6
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~ 785 (846)
|.-.|+...|..+++...+
T Consensus 197 yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 197 YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 6777888888876666543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.99 E-value=6 Score=41.80 Aligned_cols=50 Identities=8% Similarity=0.171 Sum_probs=35.0
Q ss_pred CCHhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 561 SRYSEALGFLDEMMD-----LKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKM 610 (846)
Q Consensus 561 g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (846)
|++++|++.+-.+.+ .+..........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 677788777765553 23455667777888888888888887777766554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.61 E-value=3.5 Score=39.28 Aligned_cols=55 Identities=11% Similarity=0.133 Sum_probs=26.1
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+.|++++|++.++.-.+..|. +...-..|...||-.|+++.|.+.++-+.+ +.|+
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~ 63 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK--LFPE 63 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGG
T ss_pred hCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCch
Confidence 344444444444444444444 444444455555555555555555555555 4443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.19 E-value=25 Score=40.40 Aligned_cols=255 Identities=10% Similarity=-0.014 Sum_probs=133.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCC-------ccCHHHHHHHHH
Q 003122 450 DAYGSNGLLAEAVEVFREMEQDGIEPNIVSIC--TLLAACGRCGRKVNIDAVLLAAEMRDI-------KLNTVAYNSAIG 520 (846)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~ 520 (846)
-+....|+.++++.++...+..+-..+..+-. .+.-+...+|...++..++.......- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34666788888888887766421122333322 233344556665567776666554321 011222223333
Q ss_pred HHHhcCC-HHHHHHHHHHHhhCCCCCCHHH--HH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 521 SYMNVGE-YEKAIALYKCMKKRKVMPDSVT--YT--VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQ 595 (846)
Q Consensus 521 ~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~--~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 595 (846)
++.-.|. -+++...+..++... +... .. .+...++-.|+.+....++..+.+.. ..+..-...+.-++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 3333332 245666666665532 2221 22 23333445677777777777766632 22222233344445577
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDV-ITYT---AMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~-~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 671 (846)
|+.+.+..+.+.+... .+. .-|. +++-+|+-.|+.....+++..+.+. ...+......+.-++...|+.+.+
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 8888888888888763 332 2232 3445677888877666788888763 122222223333345556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCC-HHHHHHHHHhhcc
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLA--CSLLRD-WKTTIDLIKQMEP 715 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~-~~~A~~~~~~~~~ 715 (846)
..+++.+.+.+ +..+-.....+ ....|+ ..++++.+..+..
T Consensus 614 ~rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77776665533 33332222222 223333 2677888887754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.07 E-value=7.9e-06 Score=83.64 Aligned_cols=242 Identities=14% Similarity=0.148 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 513 VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAY 592 (846)
Q Consensus 513 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 592 (846)
..|..|..++...+++.+|++.|-+.. |...|..++.+..+.|.+++-+.++..+.+.. -+..+=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 345556666665565555554332211 23335556666666666666666665554432 2223334555566
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------C-CCCCCH
Q 003122 593 SKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMET-------------------N-NIEPDS 652 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------~-g~~p~~ 652 (846)
++.+++.+-.+++. .||..-...+++-|...|.++.|.-+|..+.. . .-..+.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 66665544322221 24444444555555555555555544433211 0 011234
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
.||..+..+|...+.+.-|...--.++-. .+.+..++..|...|.+++-+.+++....... ...+.+..|+-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglEr-AHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT-CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc-hhHHHHHHHHHHH
Confidence 57777777888877777665443333321 11223455667788888888888887764333 3778888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
.+-.- ++-.+-++-... .-|. -.+++++.+.--|.|+.-+|..
T Consensus 274 sKY~P-eKlmEHlklf~s---riNi---pKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 274 SKFKP-QKMREHLELFWS---RVNI---PKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HSSCT-THHHHHHTTSSS---SSCC---TTTHHHHTTTTCHHHHHHHHHH
T ss_pred HhcCH-HHHHHHHHHHHH---hccH---HHHHHHHHHHhhHHHHHHHHhc
Confidence 77632 222222211110 1111 1246667777778887766653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.94 E-value=1.6 Score=38.08 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 756 NFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 756 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
+...-+.++.+|.+.|++++|+.+++.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 4456677889999999999999998765
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.52 E-value=6.9 Score=47.27 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------
Q 003122 585 YSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-------------- 650 (846)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-------------- 650 (846)
...++..+...+..+-|.++..- ++.+...-..++.+|...|++++|...|++... |+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 33566677788888877664432 234555556778889999999999999988632 1111
Q ss_pred ---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 651 ---------DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD----SIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 651 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
-..-|..++..+.+.|.++.++++.+.+++.....+. ..|..+...+...|++++|-..+-.++...
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 1123566777788888888888888888764322122 246667777888888888888887776443
Q ss_pred CccchhhHHHHHHHHHhcCCHHHH
Q 003122 718 HVVSIGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 718 ~~~~~~~~~~l~~~~~~~g~~~~A 741 (846)
- -..++..|+..+++.|.++.=
T Consensus 969 ~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCCHHHH
T ss_pred H--HHHHHHHHHHHHHhCCChhhh
Confidence 3 346778888888888877654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.29 E-value=4.4 Score=38.61 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=79.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchh--hHHHHHHHHHhcCCH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIG--LLNQLLHLLGKSGRI 738 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 738 (846)
...+.|+.++|++.....++..|. |...-..+...+|-.|+|+.|..-++.....+|...+. .|..++.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 456788999999988888887766 77777788889999999999999888887777764422 23344333
Q ss_pred HHHHHHHHHHHhcCCCc----CHHHHH-HHHHH--HHhcCCHHHHHHHHHHHHHC
Q 003122 739 ESMMKLFFKIVSSGAEA----NFNTYS-ILLKN--LLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p----~~~~~~-~l~~~--~~~~g~~~~A~~~~~~~~~~ 786 (846)
+..=.+.+..+..| ++..|. .|+.+ ....|+.++|.++..++.+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 33333444444455 223343 34444 55679999999999998774
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.17 E-value=1.6 Score=49.18 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 003122 760 YSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRG 806 (846)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 806 (846)
|..|+....+.++++||++.|+..+.. .=++.....|+..|...+
T Consensus 616 WEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 616 WELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 556666666666666666666666643 235555666666665543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.09 E-value=12 Score=45.02 Aligned_cols=144 Identities=8% Similarity=0.075 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS----IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE 692 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 692 (846)
..-|..++..+.+.+.++.++++-+.+++..-.-+. ..|..+..++.+.|++++|...+-.+.+... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 345777888888999999999998888864222221 2577888999999999999999988876443 4667777
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHH-HHHHHHHHhc
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTY-SILLKNLLAA 770 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~-~~l~~~~~~~ 770 (846)
++..++..|..++-.. + --.|..++..+++..-.+....+. ...| ..|-..+...
T Consensus 977 LV~~lce~~~~~~L~~----l-------------------pf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r 1033 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLN----Y-------------------SMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKH 1033 (1139)
T ss_dssp HHHHHHHHCCHHHHHH----H-------------------TTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhhC----C-------------------CCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhcc
Confidence 7777777766443221 1 112333444444432221001222 1234 4445557778
Q ss_pred CCHHHHHH-HHHHHHH
Q 003122 771 GNWRKYIE-VLQWMED 785 (846)
Q Consensus 771 g~~~~A~~-~~~~~~~ 785 (846)
|++.+|.. +|+.+.+
T Consensus 1034 ~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1034 QNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HTTSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 88876654 4666654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.50 E-value=21 Score=36.68 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHhc-CCHhHHHHHHHHHHHCCCCCCHHHH-
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKR-KVMPD---SVTYTVLISSCCRL-SRYSEALGFLDEMMDLKIPLTNQVY- 585 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~---~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~- 585 (846)
..+...|...|.+.|+.++...++.....- +..|- ......++..+... +..+.-.++..+.++.. .....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456778889999999999999998876542 11222 23355667766554 33444445554444311 0111122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHH
Q 003122 586 -----SSVISAYSKQGLIAEAESMFNMMKMS--GCSPD---VITYTAMLHAYNTAEDWEKACALFLEMET--NNIEPDSI 653 (846)
Q Consensus 586 -----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~~p~~~ 653 (846)
..++..|...|++.+|.+++..+.+. ..... ...+..-+..|...+++.++...+.+... ..+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25778888888888888888887762 11111 34555666777888888888888887764 12324433
Q ss_pred HHH----HHHHHHH-hcCChhHHHHHHHHHHH
Q 003122 654 ACS----ALMRAFN-KGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 654 ~~~----~l~~~~~-~~g~~~~A~~~~~~~~~ 680 (846)
... .-+-.+. ..+++.+|...|-+..+
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 222 1223455 67888888777766653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=46 Score=36.61 Aligned_cols=116 Identities=5% Similarity=-0.122 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDVI----TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 671 (846)
.+.+.|...+....... ..+.. .+..++..+...+...++...+.+.... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888876543 22322 2233333344445355666677766553 33433333344444567999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
...|+.|...... .....+=++.++...|+.++|..+++.+..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999888653222 445556677788888999999998888753
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.76 E-value=32 Score=33.88 Aligned_cols=165 Identities=11% Similarity=-0.016 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACAL----FLEMETNNIEPDSIACSALMRAF 662 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~g~~p~~~~~~~l~~~~ 662 (846)
++..=|.+++++++|++++..-.. .+.+.|++..|.++ .+-..+.+.+++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 334446677777777776544332 23445665555544 33334456777777666676666
Q ss_pred HhcCChh-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 663 NKGGQPS-KVLLVAEFMRE----QD--ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 663 ~~~g~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
.....-+ +=..+++++++ .| ..-++..+..++..|...|++.+|...+-....+ +...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~----s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD----SMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH----HHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc----cHHHHHHHHHHHHHh
Confidence 5433221 12334444442 11 1225556666666666667766666655422111 122233333322222
Q ss_pred ---CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 736 ---GRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 736 ---g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
|.-.++--.+-++ +-.|.-.|+...|..+++...+
T Consensus 179 ~~~~~~~e~dlf~~Ra---------------VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 179 VDDIEDSTVAEFFSRL---------------VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TTCCCHHHHHHHHHHH---------------HHHHHHTTBHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHH---------------HHHHHHhcCHHHHHHHHHHHHH
Confidence 2222221111111 1126678899998888877643
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.15 E-value=12 Score=33.88 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRD 797 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 797 (846)
+|..++..+ .++...++..+|.-+...|+.-.. .-|...+..+...|++++|.++|+..++.+-+|-...-..
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~ 155 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRS 155 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 344444443 234466777777777776666543 3666667777777777777777777777766665444333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.76 E-value=4.6 Score=41.80 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003122 303 HNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLA-----EGLKPNIVS 374 (846)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 374 (846)
...++..+...|++++|+..+..+....|- +...|..++.++.+.|+..+|++.|+.+.+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566777788888888888887776654 777888888888888888888888877644 377776654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=81.54 E-value=32 Score=31.46 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 298 PDTTTHNIVIYCLVKLGQYDKAIDLFHSMRE 328 (846)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 328 (846)
++..+-...+.++.+.+. .++...+..+..
T Consensus 155 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 344444555555555554 344444444443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.33 E-value=12 Score=39.40 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHH--HHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMRE---QDITFSDS--IFF 691 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~--~~~ 691 (846)
++..++..|.+.|++++|.+.|.++...-..+. ...+..+++.+...+++..+...++++.. .+..++.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556677777788888888888887776322222 44666677777777777777777777654 22222211 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh
Q 003122 692 EMVLACSLLRDWKTTIDLIKQM 713 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~ 713 (846)
+.+..+...+++.+|-..|-.+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2233344556666665555444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.27 E-value=44 Score=32.90 Aligned_cols=167 Identities=9% Similarity=0.017 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHH
Q 003122 549 TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESM----FNMMKMSGCSPDVITYTAML 624 (846)
Q Consensus 549 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~p~~~~~~~l~ 624 (846)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-.+ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345566668889999999988765432 35566776666554 44455567888988888888
Q ss_pred HHHHhcCCHH-HHHHHHHHHHH----CCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 625 HAYNTAEDWE-KACALFLEMET----NNI--EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC 697 (846)
Q Consensus 625 ~~~~~~g~~~-~A~~~~~~~~~----~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 697 (846)
..+.....-+ .=.++.+++++ .|- .-|+.....++..|.+.|++.+|...|-. +-..+...+..++.-.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 8876533222 22455555553 322 23678888999999999999998887651 2111344554444333
Q ss_pred Hhc---CCHHHHHHHHHhhccCCCccchhhHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 698 SLL---RDWKTTIDLIKQMEPSFHVVSIGLLN-QLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 698 ~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
... |...+ .+.+. ..+-.|.-.|++..|..+++...+
T Consensus 176 ~~~~~~~~~~e----------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDST----------------VAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHH----------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcch----------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 332 33222 22221 111224467899999998887765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=80.03 E-value=76 Score=34.88 Aligned_cols=201 Identities=9% Similarity=0.027 Sum_probs=112.8
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 561 SRYSEALGFLDEMMDLKIPLTNQVYSSVIS----AYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKA 636 (846)
Q Consensus 561 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (846)
.+.+.|...+....+.. ..+......+-. .+...+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 47899999998887543 234433332222 333345355677777766553 23433333444445577999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 003122 637 CALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS 716 (846)
Q Consensus 637 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 716 (846)
...|+.|.... ........-+.+++...|+.++|..+|+.+... . +|+.++ +..+.|..-. . .....
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~l-Aa~~Lg~~~~-~----~~~~~ 371 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMV-AAQRIGEEYE-L----KIDKA 371 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHH-HHHHTTCCCC-C----CCCCC
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHH-HHHHcCCCCC-C----CCCCC
Confidence 99999987531 123444556777888999999999999999752 1 233322 2222332100 0 00000
Q ss_pred CCccc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 717 FHVVS----IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 717 ~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
.+... ...-...+..+...|....|...+..+.+. .+......++......|.+..++...
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 00000 001123345677788888888888877752 22333334555556677776666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 846 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.5 bits (158), Expect = 9e-12
Identities = 35/280 (12%), Positives = 85/280 (30%), Gaps = 14/280 (5%)
Query: 141 NHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNA 200
+ Y + + + + A ++
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 201 LISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENG 260
L G+ A++ F+ + Y NL N + A+ +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233
Query: 261 VGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIVIYCLVKLGQYDKA 319
+V N+ Y+ G A+ + + ++P + + L + G +A
Sbjct: 234 PNHAVVHGNLACVYYEQG-LIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEA 290
Query: 320 IDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNAL 378
D +++ + ++ ++ G IE ++ L + P +++ L
Sbjct: 291 EDCYNTALRLCPTH---ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNL 345
Query: 379 MAAYASHGMSKEALSVFNEIKKNGLCPDIV-SYTSLLNAY 417
+ G +EAL + E + + P +Y+++ N
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 2e-09
Identities = 47/382 (12%), Positives = 117/382 (30%), Gaps = 22/382 (5%)
Query: 274 AYKNGAQYSKALSYFELMKGTNIRPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSE 332
Y+ G + A + + PD T ++ + + D++ ++
Sbjct: 9 EYQAG-DFEAAERHCM--QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 333 CLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEAL 392
+ +L +V + + + A A
Sbjct: 66 L------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 393 SVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAY 452
+V + PD+ S L ++ ++ + + I V++S L +
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Query: 453 GSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNT 512
+ G + A+ F + ++PN + L + R + + +
Sbjct: 180 NAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 513 VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV-TYTVLISSCCRLSRYSEALGFLD 571
V + + Y G + AI Y+ + ++ P Y L ++ +EA +
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 572 EMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTA 630
+ P +++ + +QG I EA ++ K P+ ++ +
Sbjct: 296 TALR-LCPTHADSLNNLANIKREQGNIEEAVRLYR--KALEVFPEFAAAHSNLASVLQQQ 352
Query: 631 EDWEKACALF---LEMETNNIE 649
++A + + + +
Sbjct: 353 GKLQEALMHYKEAIRISPTFAD 374
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 1e-08
Identities = 58/395 (14%), Positives = 120/395 (30%), Gaps = 23/395 (5%)
Query: 207 RAGQWRWAMNIFDDMLRAAVAPSRS-TYNNLINACGSTGNWREALKVCKKMTENGVGPDL 265
+AG + A + R P + L + + + P L
Sbjct: 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLL 66
Query: 266 VTHNIVLSAYKN-GAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFH 324
AY N G Y + E ++ I Y +
Sbjct: 67 AE------AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 325 SMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAA-YA 383
+ + + + + A +PN + + +
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 384 SHGMSKEALSVFNEIKKNGLCPDIV-SYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNL 442
+ G A+ F + L P+ + +Y +L N ++ +A + + +
Sbjct: 181 AQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237
Query: 443 VSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLA 502
V + L Y GL+ A++ +R + ++P+ LA + V
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 503 AEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV-TYTVLISSCCRLS 561
+R + + N+ G E+A+ LY+ K +V P+ ++ L S +
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYR--KALEVFPEFAAAHSNLASVLQQQG 353
Query: 562 RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596
+ EAL E + + P YS++ + +
Sbjct: 354 KLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 5e-08
Identities = 42/347 (12%), Positives = 105/347 (30%), Gaps = 18/347 (5%)
Query: 308 YCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEG 367
+ + G ++ A + + + + + ++ +++ +
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61
Query: 368 LKPNIV-SYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKA 426
P + +Y+ L Y G +EA+ + +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 427 REVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAA 486
+ + ++ N + S + A+A ++ +PN + L
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA----CYLKAIETQPNFAVAWSNLGC 177
Query: 487 CGRCGRKVNIDAVLLAAEMRDIKLNTV-AYNSAIGSYMNVGEYEKAIALYKCMKKRKVMP 545
+ A+ + + N + AY + +++A+A Y
Sbjct: 178 VFNA-QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235
Query: 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMF 605
+V + L A+ ++L+ P Y ++ +A ++G +AEAE +
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294
Query: 606 NMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALF---LEMETNNIE 649
N C + + + + E+A L+ LE+
Sbjct: 295 NTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 1e-06
Identities = 47/375 (12%), Positives = 95/375 (25%), Gaps = 18/375 (4%)
Query: 235 NLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGT 294
L + G++ A + C ++ V + ++ + ++ +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR-RLDRSAHFST--LAI 60
Query: 295 NIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIE 354
P + LG K E L F +
Sbjct: 61 KQNPL------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114
Query: 355 NCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLL 414
L+ N Y K +
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 415 NAYGRSQQPVKAREVFNMMRINNLKPNLV-SYSALIDAYGSNGLLAEAVEVFREMEQDGI 473
+ Q + + + L PN + +Y L + + AV + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--L 232
Query: 474 EPNIVSICTLLAACGRCGRKVN--IDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKA 531
PN + LA ++ ID A E++ AY + + G +A
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEA 290
Query: 532 IALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISA 591
Y + L + EA+ + +++ P +S++ S
Sbjct: 291 EDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASV 348
Query: 592 YSKQGLIAEAESMFN 606
+QG + EA +
Sbjct: 349 LQQQGKLQEALMHYK 363
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 846 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.46 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.43 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.37 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.28 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.26 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.94 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.88 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.86 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.86 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.81 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.79 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.77 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.75 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.75 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.73 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.71 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.61 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.59 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.57 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.41 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.39 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.38 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.34 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.28 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.25 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.24 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.19 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.18 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.17 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.91 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.87 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.83 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.79 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.77 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.67 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.67 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.66 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.39 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.28 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.92 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.83 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.33 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.39 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.1e-23 Score=219.04 Aligned_cols=379 Identities=13% Similarity=0.058 Sum_probs=217.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHH
Q 003122 381 AYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAE 460 (846)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (846)
.+.+.|++++|++.++++.+.. +-+...+..+..+|.+.|++++|...|+++.+.. +.+..+|..++..|...|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 3444455555555555554431 1134444455555555555555555555554432 2344455555555555566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003122 461 AVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKK 540 (846)
Q Consensus 461 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 540 (846)
|+..+..+.+.. +.+..............+....+........... .................+....+...+.....
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 666555555542 2222222223333333333333333332222221 12333334444445556666666666655554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003122 541 RKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITY 620 (846)
Q Consensus 541 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 620 (846)
.. +.+...+..+...+...|++++|...++++++.. |.+..++..++..+...|++++|...+++....+ +.+...+
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 42 2345556666666667777777777777666643 4455666667777777777777777777666643 3345666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 621 TAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
..++..+.+.|++++|+..|+++++ +.|+ ..++..++.++...|++++|++.++.+....+. +...+..++.++..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHHH
Confidence 6667777777777777777777766 3333 556666677777777777777777776665443 55666666667777
Q ss_pred cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCC
Q 003122 700 LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGN 772 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 772 (846)
.|++++|+..++++.+..|. +..+|..++.+|...|++++|++.|+++++ +.|+ ..+|..|+.+|.+.|+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 77777777777776666665 556666777777777777777777777776 6674 4466667766666653
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.3e-22 Score=215.86 Aligned_cols=382 Identities=13% Similarity=0.029 Sum_probs=320.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 413 LLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 413 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 492 (846)
+...+.+.|++++|.+.++++.+.. +-+...+..+...|...|++++|+..|+++++.. +.+..++..+...+.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 5667888999999999999998764 4568889999999999999999999999999864 4467788999999999999
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 493 KVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
+++|...+....... +.+...+..........+....+........... .................+....+...+.+
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 999999999988775 3345555555555666666666666655555443 23444455566667788888999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS 652 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 652 (846)
..... +.+...+..++..+...|++++|...+++.++.. +.+...|..++..+...|++++|+..+++....+ ..+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 88754 5677888999999999999999999999998853 3347899999999999999999999999998853 3457
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..++.++.+.|++++|+..|+++++..+. +...+..++.++...|++++|++.++.+....|. ....+..++.++
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHH
Confidence 78888999999999999999999999998766 7888999999999999999999999999888877 778899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCC
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRGG 807 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~ 807 (846)
...|++++|+..|+++++ +.|+ ..+|..++.+|.+.|++++|+..|+++++ +.|+ +..+..++..+...|+
T Consensus 316 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999 8995 56899999999999999999999999987 5675 5578888887776654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.8e-15 Score=152.31 Aligned_cols=242 Identities=11% Similarity=0.065 Sum_probs=143.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 518 AIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGL 597 (846)
Q Consensus 518 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 597 (846)
....+.+.|++++|+..|+++++.. +-+..+|..+..++...|++++|...+.++++.. |.+...+..++.+|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 3344455555555555555555442 2234445555555555555555555555555432 3344445555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003122 598 IAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEF 677 (846)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (846)
+++|.+.++.+... .|+............ ...+.......+..+...+.+.+|.+.+.+
T Consensus 103 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRY--TPAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHh--ccchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 55555555555442 122100000000000 000000111122234445667778888888
Q ss_pred HHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 678 MREQDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 678 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+++.++. .+..++..++.++...|++++|+..++++....|. +..+|..++.+|...|++++|++.|+++++ +.|+
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 238 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPG 238 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHH--Hhhc
Confidence 8775543 34567777888888888888888888888777776 677888888888888888888888888888 7884
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 757 -FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 757 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
..+|..++.+|.+.|++++|+..|+++++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55788888888888888888888888876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.7e-15 Score=154.23 Aligned_cols=268 Identities=12% Similarity=-0.015 Sum_probs=201.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 003122 482 TLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLS 561 (846)
Q Consensus 482 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 561 (846)
.....+.+.|++++|...|+.+++.. +.+..+|..+..+|...|++++|+..|++..+.. +-+...+..++..+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45667889999999999999999875 4478899999999999999999999999998864 346778888999999999
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 562 RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFL 641 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (846)
++++|.+.++++.... |+............. ..+.......+..+...+.+.+|...|.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 9999999999998753 222111000000000 0011111112223344566788888888
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc
Q 003122 642 EMETNN-IEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV 720 (846)
Q Consensus 642 ~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 720 (846)
++++.. -..+..++..++..+...|++++|+..|++++...+. +...+..++.++...|++++|++.++++....|.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 887632 2335678888888999999999999999999987665 6788889999999999999999999998888877
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH------------HHHHHHHHHHhcCCHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN------------TYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------------~~~~l~~~~~~~g~~~~A 776 (846)
++.+|..++.+|...|++++|++.|+++++ +.|+.. .|..+..++...|+++.+
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 678899999999999999999999999999 777432 244455555555655544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=6.2e-12 Score=127.09 Aligned_cols=194 Identities=10% Similarity=0.064 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG-LIAEAESMFNMMKMSGCSPDVITYTAMLHAYN 628 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (846)
++.+...+.+.+.+++|+.+++++++.+ |.+..+|+..+.++...| ++++|+..+++.++.. +-+..+|..++..+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHH
Confidence 3444444455555555555555555543 344445555555555443 3555555555555432 122555555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 003122 629 TAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD----- 702 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 702 (846)
+.|++++|+..++++++ +.| +..+|..++.++.+.|++++|++.++++++.++. +...|+..+.++...+.
T Consensus 124 ~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 124 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred hhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 55555555555555555 222 2445555555555555555555555555554443 44444444444443332
Q ss_pred -HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 703 -WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 703 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+++|++.+.++....|. +..+|+.++..+...| .+++.+.++++++
T Consensus 201 ~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 34444455444444444 3444444444433222 3444444444444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=7.4e-12 Score=126.52 Aligned_cols=233 Identities=12% Similarity=0.083 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 003122 582 NQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE-DWEKACALFLEMETNNIEPD-SIACSALM 659 (846)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 659 (846)
..+++.+...+.+.+.+++|+++++++++.. +-+...|+..+.++...| ++++|+..+++.++ +.|+ ..+|..+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHh
Confidence 3566677777888899999999999999863 334788899888888776 58999999999988 4554 77899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC--
Q 003122 660 RAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR-- 737 (846)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 737 (846)
..+.+.|++++|++.++++++.+++ +...|..++.++...|++++|++.++++...+|. +..+|+.++.++.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccc
Confidence 9999999999999999999998776 7888999999999999999999999999988888 77889888888877665
Q ss_pred ----HHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHh--cCCcc
Q 003122 738 ----IESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQT--RGGAE 809 (846)
Q Consensus 738 ----~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~--~~~~~ 809 (846)
+++|++.+.++++ +.| +...|..++..+...| .+++...++.+.+....+ ++..+..+...+.. .+..+
T Consensus 198 ~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~ 274 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274 (315)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence 6789999999999 889 4567877777665544 578888888887633222 23344455544433 34555
Q ss_pred hHHHHHHHHHHHh
Q 003122 810 YAAIIQERIESLR 822 (846)
Q Consensus 810 ~a~~~~~~l~~l~ 822 (846)
.+...+++..++.
T Consensus 275 ~~~~~~~ka~~l~ 287 (315)
T d2h6fa1 275 NKEDILNKALELC 287 (315)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666665555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=8.8e-10 Score=113.74 Aligned_cols=297 Identities=9% Similarity=-0.077 Sum_probs=208.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CC---CCHHHHH
Q 003122 516 NSAIGSYMNVGEYEKAIALYKCMKKRKVMPD----SVTYTVLISSCCRLSRYSEALGFLDEMMDLK--IP---LTNQVYS 586 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~ 586 (846)
......+...|++++|+.++++.++.....+ ...+..+...+...|++++|...++++.+.. .. .....+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345567788999999999988877532212 2356667788888999999999998887531 11 1123456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHH
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKM----SGCSPD---VITYTAMLHAYNTAEDWEKACALFLEMETNN----IEPDSIAC 655 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p~~~~~ 655 (846)
.+...+...|++..|...+..... .+.... ...+..+...+...|++++|...+.+..... ......++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 677788899999999998887764 111111 3456677888889999999999999888631 22234566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc---chhhHH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQD--ITFS----DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV---SIGLLN 726 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 726 (846)
..+...+...|+..++...+.++.... .... ...+...+..+...|++++|...+++.....+.. ....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 667778888999999999888777521 1111 2345566778889999999999999876554432 345567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----cCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC----CHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVS----SGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA----GIQP----SYG 793 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p----~~~ 793 (846)
.++.++...|++++|...+++++. .+..|+ ..++..++.+|...|++++|++.++++++. |... ...
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~ 335 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 335 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHH
Confidence 789999999999999999999874 235554 348888999999999999999999998663 2111 112
Q ss_pred hHHHHHHHHHhcCCcchHH
Q 003122 794 MFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 794 ~~~~l~~~~~~~~~~~~a~ 812 (846)
....+...+...+..+++.
T Consensus 336 ~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 336 AMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHhcCCChHHH
Confidence 2344445555566666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=4.7e-11 Score=117.39 Aligned_cols=94 Identities=11% Similarity=-0.071 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
|..+...|.+.|++++|+..|+++++.. |.+..+|..++.+|.+.|++++|+..|+++++.. +.+..++..++.+|..
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHH
Confidence 3344444444555555555555544432 3344444445555555555555555555444431 1123444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 003122 630 AEDWEKACALFLEMET 645 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~ 645 (846)
.|++++|+..|++.++
T Consensus 118 ~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHh
Confidence 4555555555544444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=9.8e-11 Score=115.04 Aligned_cols=220 Identities=14% Similarity=0.030 Sum_probs=158.1
Q ss_pred CHhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 562 RYSEALGFLDEMMDLKIPL---TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
+.+.|+..+++++...... ...++..++.+|.+.|++++|+..|++.++.. +-+..+|+.++.+|.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3455666666766532111 23467788999999999999999999999863 3358999999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 639 LFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 639 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
.|+++++ +.|+ ..++..++.+|...|++++|+..|+++++..+. +......+...+...+..+.+..+........
T Consensus 93 ~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 93 AFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhHHHH--HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 9999998 4554 668889999999999999999999999997655 55555556666666676666655555544333
Q ss_pred CccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 718 HVVSIGLLNQLLHLLGK----SGRIESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 718 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
+... .+ .+...+.. .+..+.+...+..... ..|+. .+|..++..|...|++++|+..|++++. ..|+.
T Consensus 170 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 242 (259)
T d1xnfa_ 170 KEQW--GW-NIVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 242 (259)
T ss_dssp CCST--HH-HHHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred hhhh--hh-hHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence 3211 11 22222222 2234444444444444 45543 4888899999999999999999999986 45654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.9e-09 Score=109.72 Aligned_cols=263 Identities=10% Similarity=0.018 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC---
Q 003122 514 AYNSAIGSYMNVGEYEKAIALYKCMKKRKV-MPD----SVTYTVLISSCCRLSRYSEALGFLDEMMDL----KIPLT--- 581 (846)
Q Consensus 514 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--- 581 (846)
+++.+...|...|++++|+..|++..+... .++ ...+..+...+...|++..|...+.+.... ..+..
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 455566667777777777777776654210 111 223455566677778888888877776531 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----
Q 003122 582 NQVYSSVISAYSKQGLIAEAESMFNMMKMSG----CSPDVITYTAMLHAYNTAEDWEKACALFLEMETN--NIEPD---- 651 (846)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~---- 651 (846)
...+..+...+...|+++.|...+....... .......+..+...+...+++.++...+.+.... .....
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 2345567778888888988888888877632 1122456666677778888888888888777641 11111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhhcc-----CCCccchh
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS---DSIFFEMVLACSLLRDWKTTIDLIKQMEP-----SFHVVSIG 723 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 723 (846)
...+..+...+...|++++|...+++..+..+..+ ...+..++.++...|++++|...++++.. ..+.....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 23455666678888999999999888876443322 33456678888999999999998887642 12222466
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----------HHHHHHHHHHHHhcCCHHHHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----------FNTYSILLKNLLAAGNWRKYIE 778 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------~~~~~~l~~~~~~~g~~~~A~~ 778 (846)
++..++.+|...|++++|.+.++++++ +.+. ......++..+.+.|+.+++..
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALK--LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 788999999999999999999999987 3321 1123334445566666666644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=3.4e-11 Score=123.49 Aligned_cols=233 Identities=8% Similarity=-0.040 Sum_probs=126.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHH
Q 003122 524 NVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLS--RYSEALGFLDEMMDLKIPLTNQVY-SSVISAYSKQGLIAE 600 (846)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 600 (846)
..|.+++|+.+++...+.. +-+...|..+..++...+ ++++|+..+.+++... +.+...+ ......+...+.+++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 3444566666666665542 224445555555554443 3566666666666543 3334433 233455555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
|+..++.++..+ +-+...|+.++.++.+.|++++|...+++..+ +.|+. ..+...+...+..+++...+...+.
T Consensus 163 Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 666666666543 22456666666666666666665555444443 11211 1122234445556666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-H
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-T 759 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~ 759 (846)
..+. ....+..++..+...|++++|+..+.+....+|. +..+|..++.+|...|++++|++.++++++ ++|+.. .
T Consensus 237 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y 312 (334)
T d1dcea1 237 GRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAY 312 (334)
T ss_dssp SCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHH
T ss_pred hCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHH
Confidence 4433 3333444555555666666666666666666555 555666666666666666666666666666 666433 3
Q ss_pred HHHHHHHHH
Q 003122 760 YSILLKNLL 768 (846)
Q Consensus 760 ~~~l~~~~~ 768 (846)
|..|...+.
T Consensus 313 ~~~L~~~~~ 321 (334)
T d1dcea1 313 LDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=3.4e-11 Score=123.47 Aligned_cols=264 Identities=9% Similarity=-0.033 Sum_probs=198.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHH----------HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 524 NVGEYEKAIALYKCMKKRKVMPDS-VTYTVLISS----------CCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAY 592 (846)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 592 (846)
..+..++|+.+++..++. .|+. ..|+..... +...|.+++|+.+++.+++.. |.+...|..++.++
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 334458899999888876 4554 334332222 233455789999999998864 66778888888887
Q ss_pred HhcC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 003122 593 SKQG--LIAEAESMFNMMKMSGCSPDVITYT-AMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPS 669 (846)
Q Consensus 593 ~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 669 (846)
...+ ++++|...+++++... +++...+. .+...+...+.+++|+..++++++.+ +-+..+|..+..++.+.|+++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHH
Confidence 7765 4899999999998863 34566654 45577788899999999999999842 235778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 670 KVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIV 749 (846)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 749 (846)
+|...+..+.+..+ ........+...+..+++...+.+.....|. ....+..++..+...|+.++|...+.+++
T Consensus 196 ~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENVLL-----KELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHHHH-----HHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHhHH-----HHHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 98777766655321 1123344456677788888888887767665 45667788889999999999999999999
Q ss_pred hcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHH
Q 003122 750 SSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSFA 802 (846)
Q Consensus 750 ~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~ 802 (846)
+ ..|+ ..+|..++.+|...|++++|+..++++.+ +.|+.. .|+.+...+
T Consensus 270 ~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 270 P--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKF 320 (334)
T ss_dssp T--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred h--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHH
Confidence 9 8895 55899999999999999999999999988 567533 455564433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=9.2e-10 Score=110.84 Aligned_cols=220 Identities=9% Similarity=0.088 Sum_probs=124.4
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003122 563 YSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG--------------LIAEAESMFNMMKMSGCSPDVITYTAMLHAYN 628 (846)
Q Consensus 563 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 628 (846)
.+.+..+|++++.. ++.+...|...+..+...+ ..++|..+|++.++...+.+...|...+..+.
T Consensus 32 ~~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34566677777664 3556666665555444332 23556666666665433334555666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHH
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA-CSLLRDWKTTI 707 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~ 707 (846)
..|++++|..+|+++++........+|..++..+.+.|+.++|..+|+++++..+. +...+...+.. +...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 66666666666666665321112335666666666666666666666666665443 33344333333 23345666666
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 708 DLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG-AEAN--FNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
.+++.+....|. +..+|..++..+...|+++.|+.+|+++++.. ..|+ ...|...+..-...|+.+.+..+++++.
T Consensus 190 ~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666655555 45666666666666666666666666666521 2221 1255555555555666666666666665
Q ss_pred H
Q 003122 785 D 785 (846)
Q Consensus 785 ~ 785 (846)
+
T Consensus 269 ~ 269 (308)
T d2onda1 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=1.7e-09 Score=108.83 Aligned_cols=189 Identities=8% Similarity=-0.008 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 632 DWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIK 711 (846)
Q Consensus 632 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 711 (846)
..++|..+|++.++...+.+...|..++..+...|++++|..+|+++++..+......|...+..+.+.|+.+.|.++++
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 35667777777776433334556666677777777777777777777765544344566677777777777777777777
Q ss_pred hhccCCCccchhhHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 003122 712 QMEPSFHVVSIGLLNQLLHLL-GKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAG-I 788 (846)
Q Consensus 712 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~ 788 (846)
++....|. +...|...+... ...|+.+.|..+|+++++ ..|+ ...|..++..+...|+.++|..+|++++... .
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~--~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 77666665 445555555443 335677777777777777 5663 4467777777777777777777777776643 2
Q ss_pred CCC--HHhHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 003122 789 QPS--YGMFRDIVSFAQTRGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 789 ~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~ 823 (846)
.|+ ...+...+.|-...|+.+.+..++++..++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 222 23566666666677777777777777766554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.5e-08 Score=91.57 Aligned_cols=117 Identities=9% Similarity=-0.045 Sum_probs=71.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 741 (846)
+...|++++|++.|+++ .+++..+++.++.+|...|++++|++.|+++.+.+|. .+.+|..++.+|.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence 44555555555555432 1234445555555555555555555555555555555 455666666666666666666
Q ss_pred HHHHHHHHhcCCCc----------------C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 742 MKLFFKIVSSGAEA----------------N-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 742 ~~~~~~~~~~g~~p----------------~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+.|+++++ ..| + ..++..++.+|.+.|++++|.+.++++.+
T Consensus 90 ~~~~~kAl~--~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 90 IKDLKEALI--QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHH--TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--hCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666654 211 1 23667778888888888888888888776
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=3.1e-08 Score=90.97 Aligned_cols=141 Identities=9% Similarity=-0.033 Sum_probs=73.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 003122 589 ISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQ 667 (846)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 667 (846)
+..+...|+++.|++.|.++. +|+..+|..++.+|...|++++|++.|++.++ +.|+ ...|..++.+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhcc
Confidence 333444555555555554321 33444555555555555555555555555554 2222 4445555555555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
+++|+..|++++..........+. .+..........++..++.++.+.|++++|.+.+.+
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~--------------------~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~ 145 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYK--------------------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 145 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECG--------------------GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCchHHHH--------------------HhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555554422110000000 000000111245677899999999999999999999
Q ss_pred HHhcCCCcCH
Q 003122 748 IVSSGAEANF 757 (846)
Q Consensus 748 ~~~~g~~p~~ 757 (846)
+++ +.|+.
T Consensus 146 A~~--~~~~~ 153 (192)
T d1hh8a_ 146 ATS--MKSEP 153 (192)
T ss_dssp HHT--TCCSG
T ss_pred HHh--cCCCc
Confidence 998 77753
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.6e-08 Score=84.29 Aligned_cols=97 Identities=9% Similarity=-0.105 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHh
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLA 769 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 769 (846)
...+..+...|++++|+..|+++...+|. ++.+|..++.+|...|++++|+..+.++++ +.| +...|..++.+|..
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHH--hccchhhHHHHHHHHHHH
Confidence 34456667777777777777777766666 667777778888888888888888888887 777 45577777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH
Q 003122 770 AGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 770 ~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
.|++++|+..++++.+ +.|+.
T Consensus 84 ~~~~~~A~~~~~~a~~--~~p~~ 104 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLK--HEANN 104 (117)
T ss_dssp TTCHHHHHHHHHHHHT--TCTTC
T ss_pred ccCHHHHHHHHHHHHH--hCCCC
Confidence 8888888888887776 44543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=2.2e-08 Score=83.50 Aligned_cols=105 Identities=11% Similarity=-0.093 Sum_probs=84.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 736 (846)
.-+..+.+.|++++|+..|+++++.++. +...|..++.++...|++++|+..++++....|. ++.+|..++.++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHcc
Confidence 3456677888888888888888887766 7778888888888888888888888888877777 6778889999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcCH-HHHHHHHH
Q 003122 737 RIESMMKLFFKIVSSGAEANF-NTYSILLK 765 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~ 765 (846)
++++|+..|+++++ +.|+. ..+..+..
T Consensus 86 ~~~~A~~~~~~a~~--~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 86 RFEEAKRTYEEGLK--HEANNPQLKEGLQN 113 (117)
T ss_dssp CHHHHHHHHHHHHT--TCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 99999999999998 88854 35555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=2e-08 Score=89.33 Aligned_cols=93 Identities=8% Similarity=-0.047 Sum_probs=47.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 738 (846)
+..|.+.|++++|+..|+++++.++. +...|..++.++...|++++|++.++++.+.+|. +..+|..++.+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 33455555555555555555554443 4444455555555555555555555554444444 444455555555555555
Q ss_pred HHHHHHHHHHHhcCCCc
Q 003122 739 ESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p 755 (846)
++|...++++++ +.|
T Consensus 95 ~eA~~~~~~a~~--~~p 109 (159)
T d1a17a_ 95 RAALRDYETVVK--VKP 109 (159)
T ss_dssp HHHHHHHHHHHH--HST
T ss_pred HHHHHHHHHHHH--cCC
Confidence 555555555555 444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=1.2e-07 Score=93.96 Aligned_cols=205 Identities=11% Similarity=0.006 Sum_probs=139.7
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 003122 562 RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS----GCSPD-VITYTAMLHAYNTAEDWEKA 636 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A 636 (846)
++++|.++|.++ ++.|...|++++|.+.|.++... +-.++ ..+|..++.+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456676666554 56688888899998888887752 11111 46788888899999999999
Q ss_pred HHHHHHHHHC----CCC-CCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHH
Q 003122 637 CALFLEMETN----NIE-PDSIACSALMRAFNK-GGQPSKVLLVAEFMREQDI---TF--SDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 637 ~~~~~~~~~~----g~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~ 705 (846)
+..+++..+. |.. ....++..++..|.. .|++++|++.++++.+... .+ ...++..++.++...|++++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 9999887652 111 113456666666644 6999999999998875211 10 13456778889999999999
Q ss_pred HHHHHHhhccCCCccc------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH------HHHHHHHHHHh--cC
Q 003122 706 TIDLIKQMEPSFHVVS------IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN------TYSILLKNLLA--AG 771 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~~--~g 771 (846)
|++.++++....+... ...+...+..+...|+++.|.+.++++.+ +.|... ....++.+|.. .+
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l~~a~~~~d~e 254 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCccchHHHHHHHHHHHHHHhcCHH
Confidence 9999998765544422 12345566677788999999999999998 776322 33455555554 35
Q ss_pred CHHHHHHHHHHH
Q 003122 772 NWRKYIEVLQWM 783 (846)
Q Consensus 772 ~~~~A~~~~~~~ 783 (846)
.+++|+..|+++
T Consensus 255 ~~~eai~~y~~~ 266 (290)
T d1qqea_ 255 QLSEHCKEFDNF 266 (290)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHHHHH
Confidence 688888888765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=9.7e-09 Score=95.86 Aligned_cols=99 Identities=6% Similarity=-0.095 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHH
Q 003122 650 PDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLL 729 (846)
Q Consensus 650 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 729 (846)
|+...+...+..|.+.|++++|+..|+++++.+|. +...|..++.+|...|++++|+..++++....|. .+.+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 33444444444555555555555555555544433 4444555555555555555555555555544444 344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 003122 730 HLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 730 ~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.+|...|++++|...|+++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=2.9e-08 Score=92.45 Aligned_cols=98 Identities=10% Similarity=-0.073 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHH
Q 003122 685 FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSIL 763 (846)
Q Consensus 685 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 763 (846)
|+...+...|..+...|++++|+..|+++...+|. ++.+|..++.+|.+.|++++|+..|+++++ +.|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 67778889999999999999999999999989988 789999999999999999999999999999 9995 5699999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+.+|...|++++|+..|+++.+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.1e-07 Score=84.45 Aligned_cols=99 Identities=8% Similarity=0.014 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 768 (846)
+...+..|.+.|++++|+..|+++...+|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..+|..++.+|.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHH
Confidence 445677888999999999999999999998 889999999999999999999999999999 9995 569999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 769 AAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
..|++++|+..++++.+ +.|+..
T Consensus 90 ~~g~~~eA~~~~~~a~~--~~p~~~ 112 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVK--VKPHDK 112 (159)
T ss_dssp HTTCHHHHHHHHHHHHH--HSTTCH
T ss_pred HcCCHHHHHHHHHHHHH--cCCCCH
Confidence 99999999999999998 456543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=1.6e-07 Score=92.98 Aligned_cols=200 Identities=9% Similarity=-0.030 Sum_probs=133.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHH
Q 003122 554 ISSCCRLSRYSEALGFLDEMMDL----KIPL-TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGC-SPD----VITYTAM 623 (846)
Q Consensus 554 i~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l 623 (846)
...|...+++++|...|.++.+. +.++ -..+|..++.+|.+.|++++|...+++....-. ..+ ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566777777777777776642 1111 234677778888888888888888887665210 011 3456666
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------HHHHH
Q 003122 624 LHAYN-TAEDWEKACALFLEMETN----NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS------DSIFF 691 (846)
Q Consensus 624 ~~~~~-~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~ 691 (846)
+..|. ..|++++|+..++++.+. +..+. ..++..++..+...|++++|+..|+++........ ...+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 66664 469999999999888651 21121 34677888899999999999999999887543321 12345
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCc
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVS----IGLLNQLLHLLGKS--GRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~g~~p 755 (846)
..+.++...|+++.|...+++.....|... ...+..++.++... +.+++|+..|+++.+ ++|
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~--lD~ 271 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDK 271 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cCH
Confidence 666777889999999999999887765422 23456666766553 468999999887776 554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.73 E-value=2.7e-08 Score=82.09 Aligned_cols=92 Identities=8% Similarity=-0.114 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 768 (846)
...++..+.+.|++++|+..++++....|. ++.+|..++.++.+.|++++|+..|+++++ +.| +..+|..++..|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHH
Confidence 356677888888888888888888888887 778889999999999999999999999999 888 4668888999999
Q ss_pred hcCCHHHHHHHHHHHH
Q 003122 769 AAGNWRKYIEVLQWME 784 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~ 784 (846)
..|++++|++.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 9999999999988764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.71 E-value=1.6e-05 Score=76.97 Aligned_cols=222 Identities=11% Similarity=0.014 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003122 549 TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSK----QGLIAEAESMFNMMKMSGCSPDVITYTAML 624 (846)
Q Consensus 549 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 624 (846)
.+..|...+...+++++|+++|+++.+.| +...+..|..+|.. ..+...|...++.....+ +......+.
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 34444444445555555555555555543 33444444554443 445555666655555532 333333443
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 625 HAYNT----AEDWEKACALFLEMETNNIEPDSIACSALMRAFNK----GGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 625 ~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
..+.. ..+.+.|...+++..+.|. ......+...+.. ......|...+......+ +...+..++..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhh
Confidence 33322 3455666666666665432 1222222222221 233444555555555432 44555555555
Q ss_pred HHh----cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 003122 697 CSL----LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----SGRIESMMKLFFKIVSSGAEANFNTYSILLKNLL 768 (846)
Q Consensus 697 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 768 (846)
+.. ..+...+..+++...+.+ ++.++..|+..|.. ..++++|+..|+++.+.| ++..+..|+..|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 553 344556666666554332 34455667666655 458888888888888733 4567777888877
Q ss_pred h----cCCHHHHHHHHHHHHHCCC
Q 003122 769 A----AGNWRKYIEVLQWMEDAGI 788 (846)
Q Consensus 769 ~----~g~~~~A~~~~~~~~~~g~ 788 (846)
. ..+.++|.++|+++.+.|.
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCCccCHHHHHHHHHHHHHCcC
Confidence 5 3367888888888877663
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.67 E-value=2.1e-05 Score=76.04 Aligned_cols=224 Identities=12% Similarity=0.037 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR----LSRYSEALGFLDEMMDLKIPLTNQVYSS 587 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 587 (846)
+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..++..|...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4456667777778888888888888887765 56666667766665 567888888888887754 3444455
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 588 VISAYSK----QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYN----TAEDWEKACALFLEMETNNIEPDSIACSALM 659 (846)
Q Consensus 588 l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 659 (846)
++..+.. ..+.+.|...++.....| .......+...+. .......|...+.+.... .+...+..|.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 5555443 467788888888887764 2333333333333 345677888888887763 4566777787
Q ss_pred HHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 660 RAFNK----GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL----LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 660 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
..|.. ..+...+..+++...+.| +......++..+.. ..+.++|+.+|++..+.+ ++.++..|+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 77775 445667788888888765 67777778877765 568999999999987665 34577788888
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCC
Q 003122 732 LGK----SGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 732 ~~~----~g~~~~A~~~~~~~~~~g~ 753 (846)
|.. ..+.++|.+.|+++.+.|.
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 875 3489999999999998553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.2e-07 Score=79.03 Aligned_cols=96 Identities=9% Similarity=0.026 Sum_probs=56.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCcCH---HHHHHHHHH
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG---RIESMMKLFFKIVSSGAEANF---NTYSILLKN 766 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~ 766 (846)
++..+...+++++|++.|+++...+|. ++.++..++.++.+.+ ++++|+.+++++++ ..|++ .+|+.|+.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~--~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh--ccCCchHHHHHHHHHHH
Confidence 444455555666666666666555555 5556666666665533 33456666666666 44422 256666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 767 LLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
|.+.|++++|++.|+++++ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 6666666666666666665 455544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.4e-07 Score=78.58 Aligned_cols=100 Identities=16% Similarity=0.055 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhccCCCccc-hhhHHHHHHH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR---DWKTTIDLIKQMEPSFHVVS-IGLLNQLLHL 731 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 731 (846)
..+++.+...+++++|.+.|++++..++. +..+++.++.++.+.+ ++++|+.+++++....|.+. ..+|..|+.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 35677788888999999999999988766 7888888888887655 45579999999887776543 4588899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
|.+.|++++|++.|+++++ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 9999999999999999999 999654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=5.1e-07 Score=80.76 Aligned_cols=73 Identities=12% Similarity=-0.016 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVS 800 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 800 (846)
+|+.++.+|.+.|++++|+..++++++ +.| +..+|..++.+|...|++++|+..|+++++ +.|+ +.....+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhh--ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466777777777888888888888877 777 455777777778888888888888887776 4553 333334433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.52 E-value=2.5e-07 Score=76.07 Aligned_cols=90 Identities=8% Similarity=-0.071 Sum_probs=61.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
++..+.+.|++++|+..|+++++.++. +...|..++.++...|++++|+..++++....|. +..+|..++.+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 445566667777777777777666554 5666666677777777777777777776666666 56667777777777777
Q ss_pred HHHHHHHHHHHH
Q 003122 738 IESMMKLFFKIV 749 (846)
Q Consensus 738 ~~~A~~~~~~~~ 749 (846)
+++|.+.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=4.2e-07 Score=76.86 Aligned_cols=101 Identities=8% Similarity=0.053 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH--------HHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF--------NTYS 761 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--------~~~~ 761 (846)
+..++..+...|++++|+..|+++...+|. ++.+|..++.+|...|++++|++.++++++ +.|+. .+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHH
Confidence 445667777777777777777777777776 667788888888888888888888888887 66621 2666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 003122 762 ILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMF 795 (846)
Q Consensus 762 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 795 (846)
.++..+...|++++|+..+++... ..+++...
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 115 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVL 115 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh--cCCCHHHH
Confidence 777788888889999998888765 34555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.1e-08 Score=107.66 Aligned_cols=265 Identities=9% Similarity=-0.025 Sum_probs=146.8
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 530 KAIALYKCMKKRKVMPD-SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTN-QVYSSVISAYSKQGLIAEAESMFNM 607 (846)
Q Consensus 530 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (846)
+|.+.|++..+. .|| ...+..+..++...+++++| +++++..+ |+. ..++.. ...-...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e--~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE--QDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH--HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH--HHHHHHHHHHHHHHHHH
Confidence 677888887764 333 23455566677777777776 66666532 221 111111 11111124566777777
Q ss_pred HHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003122 608 MKMSGCSPDVITY--TAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDIT 684 (846)
Q Consensus 608 ~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (846)
..+....++..-. ..+...+...+.++.|+..+.+..+ +.| +...+..+...+.+.|+.++|...+++.....
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH--
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 6654323332211 1122223334556666666655554 344 45577788888899999999999888887643
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHH
Q 003122 685 FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSIL 763 (846)
Q Consensus 685 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 763 (846)
....+..+++++...|++++|+..|+++....|. +..+|+.|+..+...|+..+|+..|.+++. +.| ...++..|
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL 226 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNL 226 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHH
Confidence 2457788999999999999999999999988888 778899999999999999999999999998 766 45688888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWMEDAGIQPSYG----MFRDIVSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
+..+.+..+..++. ....... .+..++..+....+.+....+.+++..
T Consensus 227 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (497)
T d1ya0a1 227 QKALSKALESRDEV---------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEE 278 (497)
T ss_dssp HHHHHHHTTSCCCC---------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhh---------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Confidence 88776554322211 0111111 345555666666777766666554433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.1e-06 Score=76.54 Aligned_cols=84 Identities=10% Similarity=-0.075 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNL 767 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 767 (846)
+|..++.+|.+.|++++|+..++++...+|. ++.+|..++.+|...|++++|+..|+++++ +.| |..+...+..++
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4556777777888888888888887777776 677888888888888888888888888888 888 455666666665
Q ss_pred HhcCCHHH
Q 003122 768 LAAGNWRK 775 (846)
Q Consensus 768 ~~~g~~~~ 775 (846)
.+.+...+
T Consensus 141 ~~~~~~~~ 148 (170)
T d1p5qa1 141 QRIRRQLA 148 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.39 E-value=2.7e-06 Score=74.30 Aligned_cols=115 Identities=15% Similarity=0.054 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITF---SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLL 729 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 729 (846)
..+..-+..+.+.|++++|+..|.++++.-... +..... ..... ....+|.+++
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~----------------~~~~~-------~~~~~~~Nla 74 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL----------------DKKKN-------IEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH----------------HHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH----------------Hhhhh-------HHHHHHhhHH
Confidence 355567778889999999999999988732210 111100 00000 0234678899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 003122 730 HLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGM 794 (846)
Q Consensus 730 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 794 (846)
.+|.+.|++++|++.++++++ +.| +..+|..++.+|...|++++|+..|+++++ +.|+...
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~ 136 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLD 136 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHH
T ss_pred HHHHHhcccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH
Confidence 999999999999999999999 899 566999999999999999999999999988 5675443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.7e-06 Score=72.97 Aligned_cols=102 Identities=10% Similarity=-0.011 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc------hhhHHHHH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS------IGLLNQLL 729 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~ 729 (846)
..++..+...|++++|+..|+++++.++. +...+..++.+|...|++++|+..++++....|... ..+|..++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34455555556666666666666555443 455555556666666666666666555443332211 23566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcCHHHH
Q 003122 730 HLLGKSGRIESMMKLFFKIVSSGAEANFNTY 760 (846)
Q Consensus 730 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 760 (846)
..+...+++++|++.|.+++. ..|+....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 115 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA--EHRTPDVL 115 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCCCHHHH
Confidence 788888888888888888887 55655433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.38 E-value=5.1e-07 Score=78.08 Aligned_cols=91 Identities=8% Similarity=-0.104 Sum_probs=40.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 666 GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR----------DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 666 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
+.+++|+..|+++++.+|. +..++..++.++...+ .+++|+..++++.+.+|. +..+|..++.+|...
T Consensus 11 ~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHc
Confidence 3444444555544444433 4444444444443222 223344444444444443 333444444444332
Q ss_pred C-----------CHHHHHHHHHHHHhcCCCcCHHHH
Q 003122 736 G-----------RIESMMKLFFKIVSSGAEANFNTY 760 (846)
Q Consensus 736 g-----------~~~~A~~~~~~~~~~g~~p~~~~~ 760 (846)
| ++++|.+.|+++++ ++|+...|
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~ 122 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHY 122 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHH
Confidence 2 24556666666666 66654433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.36 E-value=2.4e-06 Score=74.63 Aligned_cols=127 Identities=12% Similarity=-0.004 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
...+...+..+.+.|++.+|+..|++++.. .+... ...+.........+ ...++..++.+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~------------~~~~~~~~~~~~~~------~~~~~~Nla~~ 76 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE------------EWDDQILLDKKKNI------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT------------TCCCHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh------------hhhhHHHHHhhhhH------HHHHHhhHHHH
Confidence 456677888899999999999999999873 11100 00011111111111 12466778889
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKN 766 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 766 (846)
|...|++++|+..++++...+|. +..+|..++.++...|++++|+..|+++++ +.|+. .+...+..+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999999999888887 778999999999999999999999999999 89954 455544443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.34 E-value=5.1e-06 Score=73.90 Aligned_cols=67 Identities=9% Similarity=-0.021 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.+|.+++.+|.+.|++++|+..++++++ +.| +..+|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~ 132 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK 132 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhh--cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Confidence 3455677777777777777777777777 667 344777777777777777777777777765 445433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.8e-07 Score=100.23 Aligned_cols=270 Identities=9% Similarity=-0.050 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHH
Q 003122 495 NIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV-TYTVLISSCCRLSRYSEALGFLDEM 573 (846)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 573 (846)
+|.+.++++.... +....++..+..++...|++++| |++++.. .|+.. .++ +....-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~--~e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKK--VEQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHT--HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHh--HHHHHHHHHHHHHHHHHHHh
Confidence 5777887776642 22345677788888888888876 6666654 23211 111 11111122356677778777
Q ss_pred HHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 574 MDLKIPLTNQVYS--SVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD 651 (846)
Q Consensus 574 ~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 651 (846)
.+....++..-.. .+...+...+.++.|+..+....... .++...+..++..+.+.|+.++|...+.+.... .|
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~- 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC- 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--HH-
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-
Confidence 7644333322221 12222334555666666665554432 234677888999999999999999999887752 22
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
..++..++..+...|++++|+..|+++++..|. +...|+.++.++...|+..+|+..|.+.....+. .+.++.+|+..
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~-~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHH
Confidence 357788999999999999999999999998776 7789999999999999999999999999887776 67888899888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
+.+..+..++.. .....++.. .+..+...+...+..++..++.+++.
T Consensus 230 ~~~~~~~~~~~~------~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~ 277 (497)
T d1ya0a1 230 LSKALESRDEVK------TKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277 (497)
T ss_dssp HHHHTTSCCCCC------SSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred HHHhhhhhhhhc------cccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 765443221100 000111222 34444445666666766666555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.28 E-value=3.1e-06 Score=75.54 Aligned_cols=76 Identities=7% Similarity=0.081 Sum_probs=55.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY-GMFRDI 798 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l 798 (846)
...+|..++.++.+.|++++|+..+.++++ +.| +..+|..++.+|...|++++|+..|+++++ +.|+. .....+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l 151 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL 151 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 455677788888888888888888888888 778 455788888888888888888888888877 45543 344444
Q ss_pred HH
Q 003122 799 VS 800 (846)
Q Consensus 799 ~~ 800 (846)
..
T Consensus 152 ~~ 153 (169)
T d1ihga1 152 LK 153 (169)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.25 E-value=1.4e-06 Score=75.28 Aligned_cols=100 Identities=9% Similarity=-0.014 Sum_probs=83.6
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCc-CHHHHHHHHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS----------GRIESMMKLFFKIVSSGAEA-NFNTYSILLK 765 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 765 (846)
|.+.+.+++|+..++++...+|. ++.++..++.+|... +.+++|+..|+++++ ++| +..+|+.++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence 45677799999999999999998 889999999998754 556899999999999 999 5669999999
Q ss_pred HHHhcCC-----------HHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 003122 766 NLLAAGN-----------WRKYIEVLQWMEDAGIQPSYGMFRDIVSF 801 (846)
Q Consensus 766 ~~~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 801 (846)
+|...|+ +++|.+.|+++++ +.|+...+...+..
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~ 128 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 128 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHH
Confidence 9987764 6889999999998 67887766554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.24 E-value=0.00099 Score=65.09 Aligned_cols=141 Identities=10% Similarity=0.086 Sum_probs=93.1
Q ss_pred HHhcccCCCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 003122 117 RWVGRFARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAE 196 (846)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (846)
++++.....+...+...|.+.|.++.|..+|..+.+ |..++..+.+.++++.|.+++... -+..
T Consensus 7 ~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~------~~~~ 70 (336)
T d1b89a_ 7 EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA------NSTR 70 (336)
T ss_dssp TTTTCC----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH------TCHH
T ss_pred HHHcCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc------CCHH
Confidence 334444444566778888899999999999986653 667788888999999998887655 3567
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 003122 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYK 276 (846)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 276 (846)
+|..+...+.+.....-| .+.......+......++..|-..|.+++...+++..... -..+...++.++..|+
T Consensus 71 ~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lya 144 (336)
T d1b89a_ 71 TWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 144 (336)
T ss_dssp HHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHH
Confidence 888888888888776554 2223334456666778899999999999999999887643 2357778888999888
Q ss_pred cCC
Q 003122 277 NGA 279 (846)
Q Consensus 277 ~~g 279 (846)
+.+
T Consensus 145 k~~ 147 (336)
T d1b89a_ 145 KFK 147 (336)
T ss_dssp TTC
T ss_pred HhC
Confidence 865
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=0.0031 Score=61.46 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 003122 193 PDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVL 272 (846)
Q Consensus 193 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 272 (846)
||..--..++..|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+.+.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 3333333445555566666666666654432 445555555666666665554432 1444555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc
Q 003122 273 SAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVN 350 (846)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 350 (846)
..+.+......| .+.......+......++..|-..|.+++...+++....... .+...++.++..|++.
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~---~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER---AHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT---CCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCc---cchHHHHHHHHHHHHh
Confidence 555555544332 111222233444445566666666666666666666543222 3555566666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.18 E-value=1.7e-05 Score=70.83 Aligned_cols=127 Identities=7% Similarity=-0.062 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
.....+......|++++|.+.|.++++....+-..- ...+.|-... ...+... ...++..++..+.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~--r~~l~~~----~~~a~~~la~~~~ 78 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPF--ATALVED----KVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHH--HHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHH--HHHHHHH----HHHHHHHHHHHHH
Confidence 344455678899999999999999998532210000 0011111111 1111111 3457889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHhHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWME-----DAGIQPSYGMFR 796 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~~~ 796 (846)
..|++++|+..++++++ .+| +...|..++.+|.+.|++.+|+..|+++. +.|+.|++.+..
T Consensus 79 ~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 79 ACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 99999999999999999 999 66799999999999999999999999973 469999876533
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=1e-05 Score=72.08 Aligned_cols=119 Identities=9% Similarity=-0.044 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC--------------CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQD--------------IT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
.+......+.+.|++++|++.|.++++.. .. .....+..++.++...|++++|+..++++...+|
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 108 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 108 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 45566778889999999999999887521 01 1334567788999999999999999999999998
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHH
Q 003122 719 VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRK 775 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 775 (846)
. .+.+|..++.+|...|++++|++.|+++++ +.|+ ..++..+..++.+.....+
T Consensus 109 ~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 109 S-NTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred h-hhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8 889999999999999999999999999999 9995 5567776666555444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.17 E-value=3.7e-05 Score=68.10 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNL 767 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 767 (846)
+|..++.+|...|++++|+..++++...+|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..+...+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4556777778888888888888887777776 677888888888888999999999999888 8884 44666666666
Q ss_pred HhcCCHHH-HHHHHHHHHH
Q 003122 768 LAAGNWRK-YIEVLQWMED 785 (846)
Q Consensus 768 ~~~g~~~~-A~~~~~~~~~ 785 (846)
...+...+ ..+.+.+|.+
T Consensus 143 ~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 55554433 4445555543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.91 E-value=7.5e-06 Score=78.26 Aligned_cols=119 Identities=12% Similarity=0.056 Sum_probs=61.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 003122 664 KGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMK 743 (846)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 743 (846)
+.|++++|+..+++.++..|. +...+..++.+++..|++++|+..++.+....|. ....+..++.++...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHHH
Confidence 456666666666666665554 5555566666666666666666666665555554 33444445444443333333322
Q ss_pred HHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 744 LFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 744 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+.+.... ..|+ ...+...+..+...|++++|.+.++++.+
T Consensus 86 ~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 86 GAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp SCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred Hhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 22111110 1222 22344445556666777777777766665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.87 E-value=3.2e-05 Score=67.49 Aligned_cols=64 Identities=8% Similarity=-0.064 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSS-----GAEAN-----FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
..+|++++.+|...|++++|...++++++. ...++ ..+|+.++.+|...|++++|+..|+++.+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999998861 01222 12678889999999999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.83 E-value=2.7e-05 Score=74.27 Aligned_cols=125 Identities=10% Similarity=-0.094 Sum_probs=75.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 628 NTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTI 707 (846)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 707 (846)
.+.|++++|+..+++.++. -+-|...+..++..|+..|++++|+..++.+.+..+. ....+..++.++...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 3557777777777777763 1234566777777777777777777777777765544 3444444555554444444443
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 708 DLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
..........+......+...+..+...|+.++|.+.++++.+ ..|+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e--~~p~ 131 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE--LRQE 131 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCC
Confidence 3322222222222444455666777788888888888888888 6664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=3.9e-05 Score=60.14 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCC------ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFH------VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYS 761 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~ 761 (846)
.++.++..+.+.|++++|+.+++++....+ .....+++.|+.++.+.|++++|+..++++++ +.|+ ..++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~~a~~ 84 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCCHHHHH
Confidence 344555555555555555555554432111 11244566677777777777777777777776 6664 33444
Q ss_pred HH
Q 003122 762 IL 763 (846)
Q Consensus 762 ~l 763 (846)
.+
T Consensus 85 Nl 86 (95)
T d1tjca_ 85 NL 86 (95)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.77 E-value=0.00014 Score=63.31 Aligned_cols=104 Identities=8% Similarity=-0.044 Sum_probs=82.0
Q ss_pred hhHHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCcC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 003122 723 GLLNQL--LHLLGKSGRIESMMKLFFKIVSSGAEAN-------------FNTYSILLKNLLAAGNWRKYIEVLQWMEDA- 786 (846)
Q Consensus 723 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 786 (846)
.+|..+ +..+...|++++|++.|+++++ +.|+ ..+|..++.+|.+.|++++|+..++++++.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~--i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence 345555 6667788999999999999998 5542 247889999999999999999999998752
Q ss_pred ----CCCCCHH-----hHHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCC
Q 003122 787 ----GIQPSYG-----MFRDIVSFAQTRGGAEYAAIIQERIESLRMKSGDP 828 (846)
Q Consensus 787 ----g~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~~~ 828 (846)
...++.. .+..++..+...|++++|...+++..++.++....
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 1222222 46778899999999999999999999998876543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.67 E-value=0.0004 Score=61.52 Aligned_cols=126 Identities=11% Similarity=-0.029 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACS 698 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 698 (846)
.....+......|++++|...|.+.++. .+... +......+.+...-..+... ....+..++.++.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~ 78 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3455566788999999999999999983 22211 00111111222222222221 2456678889999
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCcCHHH
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS-----SGAEANFNT 759 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 759 (846)
..|++++|+..++++...+|. +..+|..++.+|...|+.++|++.|+++.+ .|++|...+
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999999999999999998 789999999999999999999999999843 578887654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00011 Score=57.37 Aligned_cols=74 Identities=7% Similarity=0.002 Sum_probs=60.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-------N-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-------~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
+..-+..+|..+.+.|++++|+..|+++++ +.| + ..++..|+.+|.+.|++++|+..++++++ +.|+.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~--~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~ 79 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALR--QLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCC
Confidence 344566899999999999999999999987 433 2 34899999999999999999999999998 56764
Q ss_pred H-hHHHH
Q 003122 793 G-MFRDI 798 (846)
Q Consensus 793 ~-~~~~l 798 (846)
. ...++
T Consensus 80 ~~a~~Nl 86 (95)
T d1tjca_ 80 QRANGNL 86 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3 44444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.0037 Score=49.82 Aligned_cols=77 Identities=10% Similarity=-0.027 Sum_probs=57.5
Q ss_pred CccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCc-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 718 HVVSIGLLNQLLHLLGKSG---RIESMMKLFFKIVSSGAEA-NF-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 718 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
+.+++.+-..+++++.++. ++++|+.+++++++ ..| +. ..++.|+-+|++.|++++|...++++++ +.|+.
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~--~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 4456667778888888764 66788888988887 566 33 3777888889999999999999998887 67765
Q ss_pred HhHHHH
Q 003122 793 GMFRDI 798 (846)
Q Consensus 793 ~~~~~l 798 (846)
.....+
T Consensus 107 ~qA~~L 112 (124)
T d2pqrb1 107 KQVGAL 112 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544333
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.66 E-value=0.017 Score=47.68 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 003122 736 GRIESMMKLFFKIVSSGAEANFNTYSILLKNLLA----AGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 787 (846)
.+.++|.+.|+++.+.| +..+...|+..|.. ..+.++|..+|+++.+.|
T Consensus 73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 35667777777776632 33455556666554 345667777777776655
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.39 E-value=0.039 Score=45.39 Aligned_cols=81 Identities=11% Similarity=-0.066 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 003122 596 GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT----AEDWEKACALFLEMETNNIEPDSIACSALMRAFNK----GGQ 667 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~ 667 (846)
.+.++|...+++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34445555555544432 33344444444432 234555555555555543 23333344444433 234
Q ss_pred hhHHHHHHHHHHHCC
Q 003122 668 PSKVLLVAEFMREQD 682 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~ 682 (846)
.++|+.+|+++.+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 555555555555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.0097 Score=47.35 Aligned_cols=74 Identities=12% Similarity=-0.035 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 683 ITFSDSIFFEMVLACSLLR---DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
..+...+-+..+.++.++. +.++|+.+++.+....|.....++..|+-+|.+.|++++|.+.++++++ ++|++.
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 4456677777777777654 4568888888887777654457888999999999999999999999999 999654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.92 E-value=0.6 Score=36.25 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
.-+..+..+|+-+.-.+++..+++ .-+|++.....++.+|.+.|...+|-+++.++-+.|++
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444555666666666666666555 24556666666777777777777777777777766653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=2.3 Score=42.66 Aligned_cols=416 Identities=8% Similarity=0.004 Sum_probs=185.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 003122 306 VIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYS--VNGQIENCKGVFNTMLAEGLKPNI-VSYNALMAAY 382 (846)
Q Consensus 306 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~ 382 (846)
.+.-..+.|+.+++..+...+.. . | ...|-..-..-. .....++...++++-. -.|-. ......+..+
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~d-y----p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p---~~P~~~~lr~~~l~~L 82 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKD-Y----P-LYPYLEYRQITDDLMNQPAVTVTNFVRANP---TLPPARTLQSRFVNEL 82 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTT-S----T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhcC-C----C-CHHHHHHHHHHhccccCCHHHHHHHHHHCC---CChhHHHHHHHHHHHH
Confidence 34445567777777777666631 1 2 222322222211 2233444433333211 01111 1223334455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHH
Q 003122 383 ASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAV 462 (846)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 462 (846)
.+.+++...+..+. ..+.+...-...+.+....|+.++|...+..+-..|.. ..+.+-
T Consensus 83 ~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c~ 140 (450)
T d1qsaa1 83 ARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNACD 140 (450)
T ss_dssp HHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHHH
T ss_pred HhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHHH
Confidence 56666554333221 12233443445555666666666666555554433211 112222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 003122 463 EVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRK 542 (846)
Q Consensus 463 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 542 (846)
.+|..+.+.| ..+...+-.-+......|+...|..+...+... ........+....+...+.. .. ...
T Consensus 141 ~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~~---~~---~~~- 208 (450)
T d1qsaa1 141 KLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVLT---FA---RTT- 208 (450)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHHH---HH---HHS-
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHHH---HH---hcC-
Confidence 3333333333 233333333444444556666665554432211 22233333333322222211 11 111
Q ss_pred CCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003122 543 VMPDSVTYTVLISSCCR--LSRYSEALGFLDEMMDLKIPLTNQVYSSVIS----AYSKQGLIAEAESMFNMMKMSGCSPD 616 (846)
Q Consensus 543 ~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~p~ 616 (846)
.++......+..++.+ ..+.+.|..++....... ..+...+..+.. .+...+..+.|...+......+ .+
T Consensus 209 -~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~ 284 (450)
T d1qsaa1 209 -GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QS 284 (450)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CC
T ss_pred -CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cc
Confidence 2233333333333332 246677777777665532 222222222222 2223455677777776666543 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
.....-.+......+++..+...+..|... .........-++.++...|+.++|..+|..+... ++ |+..+.+
T Consensus 285 ~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa 357 (450)
T d1qsaa1 285 TSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA 357 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHH
Confidence 333333444455567788877777766432 1222444455677777888888888888877642 22 3222211
Q ss_pred HHhcCC-HHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 003122 697 CSLLRD-WKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNW 773 (846)
Q Consensus 697 ~~~~g~-~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 773 (846)
.+.|. +.-. ..-....+.. ....-...+..+...|+...|...+..++. - -+......++....+.|.+
T Consensus 358 -~~Lg~~~~~~----~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~--~-~~~~~~~~la~lA~~~g~~ 429 (450)
T d1qsaa1 358 -QRIGEEYELK----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK--S-KSKTEQAQLARYAFNNQWW 429 (450)
T ss_dssp -HHTTCCCCCC----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT--T-CCHHHHHHHHHHHHHTTCH
T ss_pred -HHcCCCCCCC----cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh--C-CCHHHHHHHHHHHHHCCCh
Confidence 11221 0000 0000000000 000011334556666777777777766664 1 2333445556666777777
Q ss_pred HHHHHHHHHH
Q 003122 774 RKYIEVLQWM 783 (846)
Q Consensus 774 ~~A~~~~~~~ 783 (846)
+.|+....++
T Consensus 430 ~~aI~a~~~~ 439 (450)
T d1qsaa1 430 DLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHT
T ss_pred hHHHHHHHHH
Confidence 7777655544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=4.5 Score=40.39 Aligned_cols=416 Identities=11% Similarity=0.013 Sum_probs=209.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 003122 130 LIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAG 209 (846)
Q Consensus 130 l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 209 (846)
.+....+.|+...+.++...+. .||.-+.+--.-+..-.......+...++++-+.+ +.....-..-+..+.+.+
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~---dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLK---DYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGT---TSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHhhhc---CCCCHHHHHHHHHHhccccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhcc
Confidence 3445556677777666665552 23333222111122222334555555554443321 111112233455667777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHH
Q 003122 210 QWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFE 289 (846)
Q Consensus 210 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 289 (846)
+++..+..+. ..+.+...-...+.+....|+.+.|.+.+..+-..|.. ....+.. +|.
T Consensus 87 ~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~----------------l~~ 144 (450)
T d1qsaa1 87 DWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDK----------------LFS 144 (450)
T ss_dssp CHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHH----------------HHH
T ss_pred CHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHH----------------HHH
Confidence 7766554432 12345555566777777888888888777766655432 2222233 333
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003122 290 LMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLK 369 (846)
Q Consensus 290 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 369 (846)
.+...| ..+...+..-+..+...|++..|..+...+.. .........+.+......+ .... ... .
T Consensus 145 ~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~------~~~~~~~a~~~l~~~p~~~---~~~~---~~~--~ 209 (450)
T d1qsaa1 145 VWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA------DYQTIASAIISLANNPNTV---LTFA---RTT--G 209 (450)
T ss_dssp HHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG------GGHHHHHHHHHHHHCGGGH---HHHH---HHS--C
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh------hHHHHHHHHHHHHhChHhH---HHHH---hcC--C
Confidence 333333 23444444455556666777777777654421 1223334444433222222 1111 111 2
Q ss_pred CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH
Q 003122 370 PNIVSYNALMAAYAS--HGMSKEALSVFNEIKKNGLCPDIVSY----TSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV 443 (846)
Q Consensus 370 p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 443 (846)
.+......+..++.+ ..+.+.|..++......... +..-. ..+...+...+..+.+...+......+. +..
T Consensus 210 ~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~ 286 (450)
T d1qsaa1 210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STS 286 (450)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHH
T ss_pred CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chH
Confidence 233222222233222 24667777777776553221 22111 1222233345666777777766665532 333
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003122 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYM 523 (846)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 523 (846)
...-.+......+++..+...+..|... ......-..-+..++...|+.+.|...|..+... ++ .|.-|...-
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~~- 359 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQR- 359 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHHH-
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHHH-
Confidence 3333444455667888888777776532 2223444455667777888888888888777643 22 233322211
Q ss_pred hcCC-HHHHHHHHHHHhhCCC--CCC-HHH---HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 524 NVGE-YEKAIALYKCMKKRKV--MPD-SVT---YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 524 ~~g~-~~~A~~~~~~~~~~~~--~p~-~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
.|. +. +..... .++ ... -..-+..+...|....|...+..+... .+......++....+.|
T Consensus 360 -Lg~~~~--------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g 427 (450)
T d1qsaa1 360 -IGEEYE--------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQ 427 (450)
T ss_dssp -TTCCCC--------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTT
T ss_pred -cCCCCC--------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCC
Confidence 111 00 000000 000 100 112345567889999998888887753 35556667778888899
Q ss_pred CHHHHHHHHHHHH
Q 003122 597 LIAEAESMFNMMK 609 (846)
Q Consensus 597 ~~~~A~~~~~~~~ 609 (846)
.++.|+.......
T Consensus 428 ~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 428 WWDLSVQATIAGK 440 (450)
T ss_dssp CHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHH
Confidence 9999887776654
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| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.39 E-value=3.1 Score=32.22 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=23.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 344 IHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNG 402 (846)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 402 (846)
++.+.++|+-+.-.++++.+.+.+ ++++.....+..+|-+.|...++.+++.+.-+.|
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333444444444444444433321 3333344444444444444444444444444333
|