Citrus Sinensis ID: 003144
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 844 | 2.2.26 [Sep-21-2011] | |||||||
| P36428 | 1003 | Alanine--tRNA ligase OS=A | yes | no | 0.933 | 0.785 | 0.814 | 0.0 | |
| Q5A8K2 | 969 | Alanine--tRNA ligase OS=C | N/A | no | 0.924 | 0.804 | 0.551 | 0.0 | |
| P40825 | 983 | Alanine--tRNA ligase, mit | yes | no | 0.958 | 0.822 | 0.542 | 0.0 | |
| Q54Y20 | 946 | Alanine--tRNA ligase, cyt | yes | no | 0.906 | 0.808 | 0.564 | 0.0 | |
| Q8CFX8 | 968 | Alanine--tRNA ligase, cyt | N/A | no | 0.887 | 0.773 | 0.549 | 0.0 | |
| P50475 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.887 | 0.773 | 0.548 | 0.0 | |
| Q8BGQ7 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.887 | 0.773 | 0.549 | 0.0 | |
| Q5RC02 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.885 | 0.771 | 0.549 | 0.0 | |
| O13914 | 959 | Alanine--tRNA ligase OS=S | yes | no | 0.908 | 0.799 | 0.548 | 0.0 | |
| P49588 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.885 | 0.771 | 0.549 | 0.0 |
| >sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3 | Back alignment and function desciption |
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Score = 1367 bits (3537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/788 (81%), Positives = 705/788 (89%)
Query: 45 VAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP 104
VA MPG++P +WPA +VRDT+ FF K H W SSPVVP NDPTLLFANAGMNQYKP
Sbjct: 46 VAVMPGSEPSETQWPAKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKP 105
Query: 105 IFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 164
IFLGTADPNT+LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK
Sbjct: 106 IFLGTADPNTELSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 165
Query: 165 NEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCK 224
EAIEWAWELLTKVY LP DR+YATYFGGDEKAGL PDNEARDIWLK LP+ RVLPFGCK
Sbjct: 166 KEAIEWAWELLTKVYGLPTDRIYATYFGGDEKAGLQPDNEARDIWLKVLPSGRVLPFGCK 225
Query: 225 DNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284
DNFWEMGDTGPCGPC+EIHYDR GNRDAASLVNNDDPTC+EIWN+VFIQFNRESDGSLKP
Sbjct: 226 DNFWEMGDTGPCGPCTEIHYDRIGNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKP 285
Query: 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVD 344
LPAKHVDTG+GFERLTS+LQNKMSNYDTDVFMPIFD IQ+ATGARPYSGKVG +D D+VD
Sbjct: 286 LPAKHVDTGMGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVD 345
Query: 345 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNI 404
MAYRVVADHIRTLSFAIADGS PGNEGREYVLRRILRRAVRYG E+LKA++GFFNGLV+
Sbjct: 346 MAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSS 405
Query: 405 VVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFI 464
V++VMGDVF ELK+ E I +II EEASF KTL KGIEKF+KA Q VQG LSG DAFI
Sbjct: 406 VIRVMGDVFTELKEHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAVQGNTLSGDDAFI 465
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
LWDTYGFPLDLTQLMAEERGLLVD++GFN AM+EARERSRSAQNKQAGGAIVMDADAT+
Sbjct: 466 LWDTYGFPLDLTQLMAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMDADATST 525
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
LHK GV ATDDSFK+IWFQDH+S +KAIYTGS F+ES + VG+VL S+SFYAEQGGQ
Sbjct: 526 LHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAEQGGQ 585
Query: 585 IFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPN 644
IFD G IEG FG+F V NVQI+GGFV+HIG L++ G SVG++VICKVDY+RRKLIAPN
Sbjct: 586 IFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKLIAPN 645
Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 704
HTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLRFDFSHGKPVDPE LRRIESIVN+QIK E
Sbjct: 646 HTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQIKDE 705
Query: 705 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 764
LDVFSKEA L+EAK I GLRAVFGEVYPDPVRVV+IGRKVEDLLADPEN EW +S+E C
Sbjct: 706 LDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLSSEFC 765
Query: 765 GGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGS 824
GGTH++NTREA+AFALLSEEGIAKGIRR+TAVTT A+ A AA LE+EV+DAS+ EGS
Sbjct: 766 GGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASRAEGS 825
Query: 825 LLEKVCSS 832
LEK S+
Sbjct: 826 ALEKKVSA 833
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Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7 |
| >sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=alaS PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1 | Back alignment and function description |
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| >sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3 | Back alignment and function description |
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| >sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1 | Back alignment and function description |
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| >sp|O13914|SYA_SCHPO Alanine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ala1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 844 | ||||||
| 225423779 | 1002 | PREDICTED: alanyl-tRNA synthetase-like [ | 0.945 | 0.796 | 0.854 | 0.0 | |
| 255580622 | 1025 | alanyl-tRNA synthetase, putative [Ricinu | 0.933 | 0.768 | 0.860 | 0.0 | |
| 449461691 | 956 | PREDICTED: alanine--tRNA ligase-like [Cu | 0.930 | 0.821 | 0.844 | 0.0 | |
| 449508396 | 956 | PREDICTED: LOW QUALITY PROTEIN: alanine- | 0.930 | 0.821 | 0.842 | 0.0 | |
| 297737260 | 960 | unnamed protein product [Vitis vinifera] | 0.930 | 0.817 | 0.846 | 0.0 | |
| 224083946 | 973 | predicted protein [Populus trichocarpa] | 0.938 | 0.813 | 0.838 | 0.0 | |
| 30694735 | 1003 | Alanyl-tRNA synthetase [Arabidopsis thal | 0.933 | 0.785 | 0.814 | 0.0 | |
| 334183197 | 963 | Alanyl-tRNA synthetase [Arabidopsis thal | 0.930 | 0.815 | 0.815 | 0.0 | |
| 297852712 | 955 | cytosolic tRNA-Ala synthetase [Arabidops | 0.930 | 0.821 | 0.814 | 0.0 | |
| 5734779 | 955 | cytosolic tRNA-Ala synthetase [Arabidops | 0.930 | 0.821 | 0.815 | 0.0 |
| >gi|225423779|ref|XP_002277341.1| PREDICTED: alanyl-tRNA synthetase-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1445 bits (3741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/798 (85%), Positives = 735/798 (92%)
Query: 35 SLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLF 94
S + S +AV M VEWPA KVRDTF FFE KNHV+WKSSPVVPVNDPTLLF
Sbjct: 35 SFFTYSSEAAVIGMAQKAVSEVEWPANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLF 94
Query: 95 ANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEML 154
ANAGMNQ+KPIFLGTADPNT LSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEML
Sbjct: 95 ANAGMNQFKPIFLGTADPNTALSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEML 154
Query: 155 GNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLP 214
GNWSFGDYFK EAIEWAWELLTKVY+LP DR+YATYFGGDEK+GL+PD EARD+WLKFLP
Sbjct: 155 GNWSFGDYFKKEAIEWAWELLTKVYKLPTDRIYATYFGGDEKSGLSPDTEARDMWLKFLP 214
Query: 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF 274
VLPFGCKDNFWEMGDTGPCGPC+EIH+DR GNRDAASLVNNDDPTCIEIWN+VFIQF
Sbjct: 215 PGHVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQF 274
Query: 275 NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGK 334
NRESDGSLK LPAKHVDTG+GFERLTSILQ KMSNYDTDVF+PIFDAIQQATGARPYSGK
Sbjct: 275 NRESDGSLKSLPAKHVDTGMGFERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGK 334
Query: 335 VGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ 394
VG+DDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ
Sbjct: 335 VGSDDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ 394
Query: 395 DGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQG 454
+GFFN VNIVVKVMGDVFPELKQRE HIREIIA EEASFGKTLLKGIEKFKKAAQ+VQG
Sbjct: 395 EGFFNSFVNIVVKVMGDVFPELKQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEVQG 454
Query: 455 KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGA 514
K+L+GQDAF+LWDTYGFPLDLTQLMAEERGL+VD++GFN A+DEARERSRSAQNKQAGG
Sbjct: 455 KILNGQDAFVLWDTYGFPLDLTQLMAEERGLIVDVQGFNAALDEARERSRSAQNKQAGGT 514
Query: 515 IVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLAS 574
IVMDADAT+ALHKRGV TDDSFKF WFQDH SVIKAIY+GSEF+ES GNEVGIVL +
Sbjct: 515 IVMDADATSALHKRGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNEVGIVLET 574
Query: 575 SSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVD 634
+SFYAEQGGQIFD G +EG GSF V NVQIYGGF++HIGS TE +GRFSVG++VICKVD
Sbjct: 575 TSFYAEQGGQIFDTGSLEGTSGSFQVCNVQIYGGFILHIGSFTEASGRFSVGDKVICKVD 634
Query: 635 YDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIE 694
YDRRK+IAPNHTCTHMLNFALREVLG+HVDQKGS+VLPEKLRFDFSHGKPV P+HLR+IE
Sbjct: 635 YDRRKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHPDHLRKIE 694
Query: 695 SIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENK 754
SIVNEQI AELDVFSK+A+LA+AK INGLRAVFGEVYPDPVRVV+IG+KVEDLLADP N+
Sbjct: 695 SIVNEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPGNE 754
Query: 755 EWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKE 814
+WLSISAELCGGTH+SNTREA+AFALLSEEGIAKGIRRITAVTT +A+KA E A SLE+E
Sbjct: 755 KWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDVAFKAIELARSLEQE 814
Query: 815 VDDASKIEGSLLEKVCSS 832
VDDASK EG LEK +S
Sbjct: 815 VDDASKTEGISLEKKVAS 832
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449461691|ref|XP_004148575.1| PREDICTED: alanine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449508396|ref|XP_004163302.1| PREDICTED: LOW QUALITY PROTEIN: alanine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224083946|ref|XP_002307181.1| predicted protein [Populus trichocarpa] gi|222856630|gb|EEE94177.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|30694735|ref|NP_175439.2| Alanyl-tRNA synthetase [Arabidopsis thaliana] gi|21542451|sp|P36428.3|SYA_ARATH RecName: Full=Alanine--tRNA ligase; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; Flags: Precursor gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334183197|ref|NP_001185186.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] gi|332194404|gb|AEE32525.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana] gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana] gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 844 | ||||||
| TAIR|locus:2011962 | 1003 | ALATS "Alanyl-tRNA synthetase" | 0.966 | 0.813 | 0.785 | 0.0 | |
| CGD|CAL0001447 | 969 | ALA1 [Candida albicans (taxid: | 0.924 | 0.804 | 0.546 | 1.2e-230 | |
| UNIPROTKB|Q5A8K2 | 969 | ALA1 "Alanine--tRNA ligase" [C | 0.924 | 0.804 | 0.546 | 1.2e-230 | |
| DICTYBASE|DDB_G0277823 | 946 | alaS "alanine-tRNA ligase" [Di | 0.906 | 0.808 | 0.559 | 3.3e-230 | |
| SGD|S000005862 | 983 | ALA1 "Cytoplasmic and mitochon | 0.945 | 0.811 | 0.540 | 1.1e-229 | |
| POMBASE|SPAC23C11.09 | 959 | ala1 "mitochondrial and cytopl | 0.908 | 0.799 | 0.543 | 1.3e-219 | |
| UNIPROTKB|F1P5J5 | 916 | AARS "Uncharacterized protein" | 0.885 | 0.815 | 0.545 | 1.2e-218 | |
| UNIPROTKB|A6QLT9 | 968 | AARS "AARS protein" [Bos tauru | 0.886 | 0.772 | 0.543 | 1.7e-217 | |
| RGD|1304832 | 968 | Aars "alanyl-tRNA synthetase" | 0.887 | 0.773 | 0.541 | 1.2e-216 | |
| MGI|MGI:2384560 | 968 | Aars "alanyl-tRNA synthetase" | 0.887 | 0.773 | 0.544 | 1.9e-216 |
| TAIR|locus:2011962 ALATS "Alanyl-tRNA synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3413 (1206.5 bits), Expect = 0., P = 0.
Identities = 641/816 (78%), Positives = 709/816 (86%)
Query: 17 ARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNH 76
+RV + L +H S ++S+VA MPG++P +WPA +VRDT+ FF K H
Sbjct: 18 SRVFYSSHLRRPFFSHFRFSSSSSTSSSVAVMPGSEPSETQWPAKRVRDTYVDFFRGKGH 77
Query: 77 VNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136
W SSPVVP NDPTLLFANAGMNQYKPIFLGTADPNT+LSKL+RACNTQKCIRAGGKHN
Sbjct: 78 KFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRACNTQKCIRAGGKHN 137
Query: 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEK 196
DLDDVGKDTYHHTFFEMLGNWSFGDYFK EAIEWAWELLTKVY LP DR+YATYFGGDEK
Sbjct: 138 DLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLPTDRIYATYFGGDEK 197
Query: 197 AGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLV 256
AGL PDNEARDIWLK LP+ RVLPFGCKDNFWEMGDTGPCGPC+EIHYDR GNRDAASLV
Sbjct: 198 AGLQPDNEARDIWLKVLPSGRVLPFGCKDNFWEMGDTGPCGPCTEIHYDRIGNRDAASLV 257
Query: 257 NNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFM 316
NNDDPTC+EIWN+VFIQFNRESDGSLKPLPAKHVDTG+GFERLTS+LQNKMSNYDTDVFM
Sbjct: 258 NNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTSVLQNKMSNYDTDVFM 317
Query: 317 PIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376
PIFD IQ+ATGARPYSGKVG +D D+VDMAYRVVADHIRTLSFAIADGS PGNEGREYVL
Sbjct: 318 PIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVL 377
Query: 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGK 436
RRILRRAVRYG E+LKA++GFFNGLV+ V++VMGDVF ELK+ SF K
Sbjct: 378 RRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEHEKKITDIIKEEEASFCK 437
Query: 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAM 496
TL KGIEKF+KA Q VQG LSG DAFILWDTYGFPLDLTQLMAEERGLLVD++GFN AM
Sbjct: 438 TLAKGIEKFRKAGQAVQGNTLSGDDAFILWDTYGFPLDLTQLMAEERGLLVDVDGFNKAM 497
Query: 497 DEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGS 556
+EARERSRSAQNKQAGGAIVMDADAT+ LHK GV ATDDSFK+IWFQDH+S +KAIYTGS
Sbjct: 498 EEARERSRSAQNKQAGGAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGS 557
Query: 557 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSL 616
F+ES + VG+VL S+SFYAEQGGQIFD G IEG FG+F V NVQI+GGFV+HIG L
Sbjct: 558 TFLESSAASDNVGLVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYL 617
Query: 617 TEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLR 676
++ G SVG++VICKVDY+RRKLIAPNHTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLR
Sbjct: 618 SKETGEVSVGDKVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLR 677
Query: 677 FDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVR 736
FDFSHGKPVDPE LRRIESIVN+QIK ELDVFSKEA L+EAK I GLRAVFGEVYPDPVR
Sbjct: 678 FDFSHGKPVDPEDLRRIESIVNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVR 737
Query: 737 VVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAV 796
VV+IGRKVEDLLADPEN EW +S+E CGGTH++NTREA+AFALLSEEGIAKGIRR+TAV
Sbjct: 738 VVSIGRKVEDLLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAV 797
Query: 797 TTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSS 832
TT A+ A AA LE+EV+DAS+ EGS LEK S+
Sbjct: 798 TTECAFDALNAASLLEREVEDASRAEGSALEKKVSA 833
|
|
| CGD|CAL0001447 ALA1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5A8K2 ALA1 "Alanine--tRNA ligase" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0277823 alaS "alanine-tRNA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| SGD|S000005862 ALA1 "Cytoplasmic and mitochondrial alanyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC23C11.09 ala1 "mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6QLT9 AARS "AARS protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| RGD|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P36428 | SYA_ARATH | 6, ., 1, ., 1, ., 7 | 0.8147 | 0.9336 | 0.7856 | yes | no |
| Q5A8K2 | SYA_CANAL | 6, ., 1, ., 1, ., 7 | 0.5515 | 0.9241 | 0.8049 | N/A | no |
| O13914 | SYA_SCHPO | 6, ., 1, ., 1, ., 7 | 0.5484 | 0.9087 | 0.7997 | yes | no |
| O01541 | SYAC_CAEEL | 6, ., 1, ., 1, ., 7 | 0.5333 | 0.8957 | 0.7809 | yes | no |
| A6VA71 | SYA_PSEA7 | 6, ., 1, ., 1, ., 7 | 0.4343 | 0.8436 | 0.8146 | yes | no |
| Q87LR3 | SYA_VIBPA | 6, ., 1, ., 1, ., 7 | 0.4393 | 0.8376 | 0.8220 | yes | no |
| Q5RC02 | SYAC_PONAB | 6, ., 1, ., 1, ., 7 | 0.5498 | 0.8850 | 0.7716 | yes | no |
| Q8BGQ7 | SYAC_MOUSE | 6, ., 1, ., 1, ., 7 | 0.5496 | 0.8874 | 0.7737 | yes | no |
| Q02I63 | SYA_PSEAB | 6, ., 1, ., 1, ., 7 | 0.4341 | 0.8400 | 0.8112 | yes | no |
| Q7MHR6 | SYA_VIBVY | 6, ., 1, ., 1, ., 7 | 0.4329 | 0.8412 | 0.8255 | yes | no |
| Q9VLM8 | SYAC_DROME | 6, ., 1, ., 1, ., 7 | 0.5141 | 0.8850 | 0.7732 | yes | no |
| Q54Y20 | SYAC_DICDI | 6, ., 1, ., 1, ., 7 | 0.5647 | 0.9063 | 0.8086 | yes | no |
| P40825 | SYA_YEAST | 6, ., 1, ., 1, ., 7 | 0.5429 | 0.9585 | 0.8229 | yes | no |
| P50475 | SYAC_RAT | 6, ., 1, ., 1, ., 7 | 0.5483 | 0.8874 | 0.7737 | yes | no |
| Q5E7G5 | SYA_VIBF1 | 6, ., 1, ., 1, ., 7 | 0.4269 | 0.8412 | 0.8265 | yes | no |
| Q15RG5 | SYA_PSEA6 | 6, ., 1, ., 1, ., 7 | 0.4164 | 0.8376 | 0.8173 | yes | no |
| A5FIP9 | SYA_FLAJ1 | 6, ., 1, ., 1, ., 7 | 0.4401 | 0.8459 | 0.8122 | yes | no |
| A4VJB3 | SYA_PSEU5 | 6, ., 1, ., 1, ., 7 | 0.4289 | 0.8424 | 0.8135 | yes | no |
| A7MYT5 | SYA_VIBHB | 6, ., 1, ., 1, ., 7 | 0.4329 | 0.8388 | 0.8184 | yes | no |
| Q9I553 | SYA_PSEAE | 6, ., 1, ., 1, ., 7 | 0.4341 | 0.8400 | 0.8112 | yes | no |
| Q5AQL1 | SYA_EMENI | 6, ., 1, ., 1, ., 7 | 0.5382 | 0.8945 | 0.7856 | yes | no |
| P49588 | SYAC_HUMAN | 6, ., 1, ., 1, ., 7 | 0.5498 | 0.8850 | 0.7716 | yes | no |
| Q8DC49 | SYA_VIBVU | 6, ., 1, ., 1, ., 7 | 0.4316 | 0.8412 | 0.8255 | yes | no |
| A6LEZ8 | SYA_PARD8 | 6, ., 1, ., 1, ., 7 | 0.4389 | 0.8281 | 0.8006 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.7 | 0.991 |
| 3rd Layer | 6.1.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 844 | |||
| PLN02900 | 936 | PLN02900, PLN02900, alanyl-tRNA synthetase | 0.0 | |
| PRK00252 | 865 | PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | 0.0 | |
| COG0013 | 879 | COG0013, AlaS, Alanyl-tRNA synthetase [Translation | 0.0 | |
| pfam01411 | 551 | pfam01411, tRNA-synt_2c, tRNA synthetases class II | 0.0 | |
| TIGR00344 | 851 | TIGR00344, alaS, alanine--tRNA ligase | 0.0 | |
| cd00673 | 232 | cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS | 1e-132 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-119 | |
| PRK13902 | 900 | PRK13902, alaS, alanyl-tRNA synthetase; Provisiona | 2e-85 | |
| TIGR03683 | 902 | TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | 3e-81 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-33 | |
| COG2872 | 241 | COG2872, COG2872, Predicted metal-dependent hydrol | 5e-28 | |
| smart00863 | 43 | smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn | 1e-12 | |
| PLN02961 | 223 | PLN02961, PLN02961, alanine-tRNA ligase | 1e-12 | |
| pfam07973 | 44 | pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt | 2e-12 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 3e-05 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 2e-04 |
| >gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 1467 bits (3801), Expect = 0.0
Identities = 561/789 (71%), Positives = 629/789 (79%), Gaps = 23/789 (2%)
Query: 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL 107
MP D EWP ++R TF FFE K H SSP+VPV+DPTLLF NAGMNQ+KPIFL
Sbjct: 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFL 60
Query: 108 GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEA 167
GTADPNT L KL RA NTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK EA
Sbjct: 61 GTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEA 120
Query: 168 IEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNF 227
I WAWELLTKVY LPADRLYATYFGGDEK APD+EAR IWL +LP RVLPFGCKDNF
Sbjct: 121 IGWAWELLTKVYGLPADRLYATYFGGDEK--QAPDDEARAIWLDYLPEERVLPFGCKDNF 178
Query: 228 WEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
WEMGDTGPCGPCSEIHYDR G RDAA LVNNDDP IEIWN+VFIQFNRE+DGSLKPLPA
Sbjct: 179 WEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238
Query: 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAY 347
KHVDTG+G ERL SILQNK SNYDTD+FMPIFDAIQ+ATGARPY+GKVGA+D D+VDMAY
Sbjct: 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAY 298
Query: 348 RVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVK 407
RVVADHIRTLSFAIADG P NEGR YVLRR+LRRAVRYG +L A++GFF LV +VV+
Sbjct: 299 RVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVE 358
Query: 408 VMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFI 464
+ GDVFPE+K+ E I EIIA EE SFGKTL KGIEKFKKA + G VLSG+DAF+
Sbjct: 359 LSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFL 418
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
L+DTYGFP+DLT+LMAEERG+ VD+EGF AM+EARERSR+A K GGAI + A+AT+
Sbjct: 419 LYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
L K+GV ATDD K+ W DH++V+KAI TG F+ESV G+EVGIVL +SFYAE GGQ
Sbjct: 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQ 538
Query: 585 IFDEGFIEGLFG-SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAP 643
I D G +EG G V +VQ GGFV+HIG++TE G SVG+ V CKVDYDRR+ IAP
Sbjct: 539 IGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAP 596
Query: 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKA 703
NHT TH+LN AL+EVLGDHVDQKGS+V EKLRFDFSHGKP+ PE LR +ES+VNE I
Sbjct: 597 NHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGD 656
Query: 704 ELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEL 763
L V +KE LA+AK INGLRAVFGE YPDPVRVV++G S EL
Sbjct: 657 ALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV---------------YSMEL 701
Query: 764 CGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEG 823
CGGTH+SNT EAEAF LLSEEGIAKGIRRITAVT G A +A AA SLE+E+D A K+EG
Sbjct: 702 CGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEG 761
Query: 824 SLLEKVCSS 832
S LEK +S
Sbjct: 762 SDLEKKVAS 770
|
Length = 936 |
| >gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) | Back alignment and domain information |
|---|
| >gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 844 | |||
| KOG0188 | 895 | consensus Alanyl-tRNA synthetase [Translation, rib | 100.0 | |
| PLN02900 | 936 | alanyl-tRNA synthetase | 100.0 | |
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 100.0 | |
| PRK00252 | 865 | alaS alanyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK01584 | 594 | alanyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 100.0 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 100.0 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 100.0 | |
| cd00673 | 232 | AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II | 100.0 | |
| COG2872 | 241 | Predicted metal-dependent hydrolases related to al | 100.0 | |
| PLN02961 | 223 | alanine-tRNA ligase | 100.0 | |
| KOG2105 | 415 | consensus Predicted metal-dependent hydrolase, con | 99.96 | |
| PLN02837 | 614 | threonine-tRNA ligase | 99.93 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 99.91 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 99.9 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 99.89 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 99.87 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 99.85 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 99.78 | |
| PF07973 | 44 | tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco | 99.29 | |
| smart00863 | 44 | tRNA_SAD Threonyl and Alanyl tRNA synthetase secon | 98.94 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 98.94 | |
| KOG1637 | 560 | consensus Threonyl-tRNA synthetase [Translation, r | 98.52 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 95.96 | |
| PRK09348 | 283 | glyQ glycyl-tRNA synthetase subunit alpha; Validat | 94.58 | |
| TIGR00388 | 293 | glyQ glycyl-tRNA synthetase, tetrameric type, alph | 92.55 | |
| PRK14908 | 1000 | glycyl-tRNA synthetase; Provisional | 92.0 | |
| cd00733 | 279 | GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( | 91.3 | |
| COG0752 | 298 | GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl | 90.3 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 90.18 | |
| PF02091 | 284 | tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit | 84.83 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 83.48 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 82.3 |
| >KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-235 Score=1953.95 Aligned_cols=716 Identities=61% Similarity=1.016 Sum_probs=679.7
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~QkCiR~gGkhnD 137 (844)
||++|||++||+||++|.|++|+||||||.+||||||+|||||||||+|||+ +++++|++|+|||||+||||||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHND 75 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHND 75 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCC
Confidence 8999999999999999999999999999999999999999999999999999 3458999999999999999999
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc-CCCC
Q 003144 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPAS 216 (844)
Q Consensus 138 ld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~-~~~~ 216 (844)
||+||+|.|||||||||||||||||||+|||.|||||||++||||++|||||||+||+++||++|.||++||+++ +|++
T Consensus 76 LdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~s 155 (895)
T KOG0188|consen 76 LDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDS 155 (895)
T ss_pred hhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCchH
Q 003144 217 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGF 296 (844)
Q Consensus 217 ~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmGl 296 (844)
||+||+++|||||||++|||||||||||||+|+++++.+||.|+|+++||||||||||||++||+|.|||+|||||||||
T Consensus 156 rILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGf 235 (895)
T KOG0188|consen 156 RILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGF 235 (895)
T ss_pred hccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCCCccCCCCcchHH
Q 003144 297 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376 (844)
Q Consensus 297 ERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~a~rviaDH~R~~~~~i~DG~~Psn~grgYvl 376 (844)
|||++|||+|.||||||+|+||+++|++.++++ |+| ++.+.+|+||||+|||+||+++|||||.+|+|+||||||
T Consensus 236 ERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvL 310 (895)
T KOG0188|consen 236 ERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVL 310 (895)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHH
Confidence 999999999999999999999999999999997 998 456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C
Q 003144 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQG-K 455 (844)
Q Consensus 377 RrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~-~ 455 (844)
|||||||+||++++||++++||.+|||+|++.||++||||+++.+.|.++|++||+.|++||++|.++|++.++.+++ +
T Consensus 311 RRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~ 390 (895)
T KOG0188|consen 311 RRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSK 390 (895)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998874 7
Q ss_pred CCChHHhHHhhcccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCCCCccc
Q 003144 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (844)
Q Consensus 456 ~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d 535 (844)
.|||++||.||||||||+|||++||+|+|++||.++|+++.++.+++|+.+.+.... +.+++ +++| +|+|+|
T Consensus 391 tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdD 462 (895)
T KOG0188|consen 391 TIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDD 462 (895)
T ss_pred cCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCC
Confidence 999999999999999999999999999999999999999999999999876443222 44443 4443 799999
Q ss_pred cCCcccccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccc---eEEEEeEEEECCEEEE
Q 003144 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIH 612 (844)
Q Consensus 536 ~~~Y~y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~---~~~V~~v~k~~g~i~H 612 (844)
++||+-...++++|++++.++.+++++..|+.++|+||+|+||+|+|||.+|+|.|...+. .|.|..++. ||+|+|
T Consensus 463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh 541 (895)
T KOG0188|consen 463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVH 541 (895)
T ss_pred ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEE
Confidence 9999524678999999999999999999999999999999999999999999999976443 355555555 899999
Q ss_pred EEEeecCCccCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHH
Q 003144 613 IGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRR 692 (844)
Q Consensus 613 ~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~ 692 (844)
.+.+. +.+++|++|.+.+|.+||+.+|++|||||||++|||+++ ..+.|+||++.||++||||+...++|.|++++
T Consensus 542 ~g~l~---~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~ 617 (895)
T KOG0188|consen 542 IGVLE---GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKK 617 (895)
T ss_pred Eeeec---cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHH
Confidence 99863 799999999999999999999999999999999999999 55689999999999999999988899999999
Q ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccc
Q 003144 693 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNT 772 (844)
Q Consensus 693 IE~~mNeiI~~nlpV~~~~~~~eEA~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nT 772 (844)
+|+.||++|.++.+|..+++++++|+++.|+|++|+|.||++||||++|.. ...++|+|||||+.||
T Consensus 618 vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~~-------------~~~svE~CgGTH~~~t 684 (895)
T KOG0188|consen 618 VEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGAG-------------QLTSVEFCGGTHLTNT 684 (895)
T ss_pred HHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEeccc-------------cccceeecCCcccccc
Confidence 999999999999999999999999999999999999999999999999832 3579999999999999
Q ss_pred cccccEEEEeeeccCCCeEEEEEEeChHHHHHHHHHHH
Q 003144 773 REAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACS 810 (844)
Q Consensus 773 geIg~fkI~~~s~~~kgv~RI~~vtG~~A~~~~~~~~~ 810 (844)
|+||.|.|++++++++|+|||.++||++|.++.+..++
T Consensus 685 ~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~ 722 (895)
T KOG0188|consen 685 SHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAED 722 (895)
T ss_pred cccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888875
|
|
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02961 alanine-tRNA ligase | Back alignment and domain information |
|---|
| >KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer | Back alignment and domain information |
|---|
| >smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit | Back alignment and domain information |
|---|
| >PRK14908 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain | Back alignment and domain information |
|---|
| >COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 844 | ||||
| 3htz_A | 464 | Crystal Structure Of The Catalytic Fragment Of Alan | 1e-110 | ||
| 1yfr_A | 465 | Crystal Structure Of Alanyl-Trna Synthetase In Comp | 1e-110 | ||
| 3hxu_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-108 | ||
| 3hxz_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-108 | ||
| 1riq_A | 465 | The Crystal Structure Of The Catalytic Fragment Of | 4e-99 | ||
| 2zzf_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 8e-43 | ||
| 2zze_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 7e-33 | ||
| 2ztg_A | 739 | Crystal Structure Of Archaeoglobus Fulgidus Alanyl- | 3e-27 | ||
| 2e1b_A | 216 | Crystal Structure Of The Alax-M Trans-Editing Enzym | 1e-07 |
| >pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 | Back alignment and structure |
|
| >pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 | Back alignment and structure |
| >pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 | Back alignment and structure |
| >pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 | Back alignment and structure |
| >pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 | Back alignment and structure |
| >pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 | Back alignment and structure |
| >pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Length = 216 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 | Back alignment and structure |
|---|
Score = 715 bits (1848), Expect = 0.0
Identities = 165/773 (21%), Positives = 280/773 (36%), Gaps = 139/773 (17%)
Query: 63 VRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTR 121
+R+ + FFE + H + PVV + A + ++P G A P
Sbjct: 65 MREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPP-----PANP 119
Query: 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLT 176
+Q CIR +DLD VG+ H T FEM+ + +F Y+KNE + + ELL
Sbjct: 120 LTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN 175
Query: 177 KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPC 236
++ + + + K+ W G G
Sbjct: 176 ELG-VKKEDIVY-----------------------------------KEEPWAGG--GNA 197
Query: 237 GPCSEIHYDR---------TGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
GPC E + ++ N +
Sbjct: 198 GPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGT 257
Query: 288 KHVDTGLGFERLTSILQ--NKMSNYDTDVFMPIFDAIQQATG------------------ 327
V + E + +I+ N N + + I + G
Sbjct: 258 PTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVA 317
Query: 328 ARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYG 387
+ +ADH R + F + DG P N G Y+ R ++RR++R
Sbjct: 318 DTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA 377
Query: 388 SEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447
E L+ LV + K++G F + ++EI+ E+ + T+ KG ++
Sbjct: 378 EE-LEL-GLDLYDLVEMHKKILGFEFDVPL---STVQEILELEKERYRTTVSKGTRLVER 432
Query: 448 AAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSA 506
+ K L D L+D++G P++L +A E+G V++ + + ++
Sbjct: 433 LVER--KKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKV 490
Query: 507 QNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGN 566
Q K + + AT + +++ D T EF V+
Sbjct: 491 QEK--KITLQNEYPAT---------------EKLYYDD--------PTLLEFEAEVIGVE 525
Query: 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVG 626
++L S+FY E GGQ D G++ G F V +V G V+H+ + VG
Sbjct: 526 GDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK----GAKPEVG 581
Query: 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVD 686
+V +D D R +H+ TH+L ++L++VLG+HV Q G+ K R D +H +
Sbjct: 582 TKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPS 641
Query: 687 PEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKV 744
E ++ IE + N +I A + + EA+ G ++ G +RVV +G
Sbjct: 642 EEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGF-RLYQGGVPPGRKIRVVQVG--- 697
Query: 745 EDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVT 797
+ CGGTH +T E +L E I G+ R
Sbjct: 698 --------------DDVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAA 736
|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 | Back alignment and structure |
|---|
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 844 | |||
| 2zze_A | 752 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML | 100.0 | |
| 2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 100.0 | |
| 3hy0_A | 441 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 1yfs_A | 465 | Alanyl-tRNA synthetase; alpha-beta fold, helix-loo | 100.0 | |
| 3kew_A | 241 | DHHA1 domain protein; structural genomics, PSI-2, | 100.0 | |
| 2e1b_A | 216 | PH0108, 216AA long hypothetical alanyl-tRNA synthe | 100.0 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 99.95 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 99.95 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 99.94 | |
| 1v4p_A | 157 | Alanyl-tRNA synthetase; alanine-tRNA ligase, riken | 99.93 | |
| 3rf1_A | 311 | Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA | 96.17 | |
| 1j5w_A | 298 | Glycyl-tRNA synthetase alpha chain; structural gen | 87.85 |
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-196 Score=1716.96 Aligned_cols=635 Identities=28% Similarity=0.452 Sum_probs=577.4
Q ss_pred CCCCCChHHHHHHHHHhhhhCC---CeEecCCCcccCCCCCcccccccccccccccc-cccCCCCccccccccccccccc
Q 003144 54 QVVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCI 129 (844)
Q Consensus 54 ~~~~~~~~eiR~~Fl~fF~~~g---H~~v~ssslvp~~d~~llf~nAGm~qFkp~fl-G~~~p~~p~~~~~r~~~~QkCi 129 (844)
..++||++|||++||+||++|| |++||||||||+|||||||||||||||||||+ |+++|+ ++|+|+|||||
T Consensus 53 ~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~QkCi 127 (752)
T 2zze_A 53 IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVISQPSI 127 (752)
T ss_dssp SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCccccccce
Confidence 3467999999999999999999 99999999999999999999999999999997 999986 47999999999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHH
Q 003144 130 RAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNE 204 (844)
Q Consensus 130 R~gGkhnDld~VG~t~rHhTfFEMLGn~SFg-----dYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E 204 (844)
|+ |||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 128 R~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~-------------- 187 (752)
T 2zze_A 128 RF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F-------------- 187 (752)
T ss_dssp CC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E--------------
T ss_pred ec----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e--------------
Confidence 97 8999999999999999999999999 999999999999999999999999993 2
Q ss_pred HHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeecccc----------
Q 003144 205 ARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF---------- 274 (844)
Q Consensus 205 ~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~---------- 274 (844)
+||||+|| |||||||||||| + |||||||||||
T Consensus 188 -------------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~~~~~ 229 (752)
T 2zze_A 188 -------------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPENAPQD 229 (752)
T ss_dssp -------------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTTCCSC
T ss_pred -------------------ccCcccCC--CCCCCceeEEEC---C--------------Eeeeeeeeeeecccccccccc
Confidence 68999999 999999999997 1 99999999999
Q ss_pred ---ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCCc
Q 003144 275 ---NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDA 340 (844)
Q Consensus 275 ---~r~~~g~l~~Lp~k~iDTGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~-----------~y~g~~~~~~~ 340 (844)
|| +||+|.|||+||||||||||||||||||++||||| +|.|||++|++++|++ +|.|.++.++.
T Consensus 230 ~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~ 307 (752)
T 2zze_A 230 QVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDL 307 (752)
T ss_dssp CEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSS
T ss_pred chhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccch
Confidence 88 69999999999999999999999999999999999 9999999999999986 24455553321
Q ss_pred ccc------------------------cchhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcc
Q 003144 341 DKV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDG 396 (844)
Q Consensus 341 ~~~------------------------~~a~rviaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~~lg~~~~ 396 (844)
+++ +.++||||||+||++|||+||++|||+|||||||||||||+|+++ +||++.+
T Consensus 308 ~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~-~lg~~~~ 386 (752)
T 2zze_A 308 GDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLR-ELGLEVP 386 (752)
T ss_dssp SCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHH-HTTCCCC
T ss_pred hhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHHH-HhCCCcc
Confidence 211 468899999999999999999999999999999999999999995 7999999
Q ss_pred chhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChHHhHHhhcccCCCh
Q 003144 397 FFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPL 473 (844)
Q Consensus 397 fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~---~~~l~g~~af~Lydt~GfP~ 473 (844)
|++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ .++|||++||+||||||||+
T Consensus 387 -l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~ 465 (752)
T 2zze_A 387 -LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTP 465 (752)
T ss_dssp -HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCH
T ss_pred -hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCH
Confidence 99999999999999999999999999999999999999999999999999998764 35799999999999999999
Q ss_pred hhHHHHHHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCCCCccccCCcc--cccccceEEE
Q 003144 474 DLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIK 550 (844)
Q Consensus 474 dlt~~~a~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~akVl 550 (844)
|||++||+|+|++||++ +|+++|++||+++|++.. ... .+ ...+. ..|+|+ +.+|+ |..+++|+|+
T Consensus 466 dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~--~~~---~~---~~~~~--~~~~T~-~l~Y~~~yl~~~~a~Vl 534 (752)
T 2zze_A 466 EIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG--EEL---VD---FELLK--DLPDTR-RLYYEDPFMXEFDAXVL 534 (752)
T ss_dssp HHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC---------C---CC---SSSSS--SSCCCE-EHHHHCTTCCEEEEEEE
T ss_pred HHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc--ccc---hh---hHHhc--cCCCce-eecccCCccceEEEEEE
Confidence 99999999999999999 899999999998876421 110 00 01111 346675 66776 4478999999
Q ss_pred EEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCEEEEEEEeecCCccCCCCCEEE
Q 003144 551 AIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVI 630 (844)
Q Consensus 551 ~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~i~H~~~~~~~~~~l~~G~~V~ 630 (844)
++.. .+|+||+|+|||||||||+|+|+|..++..+.|.+|++.+|.++|.+.. . +.+++|++|.
T Consensus 535 ~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V~ 598 (752)
T 2zze_A 535 RVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIVH 598 (752)
T ss_dssp EEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEEE
T ss_pred EEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcCCeEE
Confidence 9973 3699999999999999999999998776789999999999999999864 3 6789999999
Q ss_pred EEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q 003144 631 CKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSK 710 (844)
Q Consensus 631 ~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~ 710 (844)
+.|||+||+.+|++|||+|||++||+++||.+++|+|+++.++++||||++..++|++++++||++||++|++|+||++.
T Consensus 599 ~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~ 678 (752)
T 2zze_A 599 GXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWE 678 (752)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEE
T ss_pred EEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCcccee
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EcCHHHHHhhcCccccc--CCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeeccCC
Q 003144 711 EATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAK 788 (844)
Q Consensus 711 ~~~~eEA~~~~g~r~~f--ge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~~k 788 (844)
+++++||+++++.+ +| +++|.+.||||+|+ ++++++||||||+|||+||.|+|++++++++
T Consensus 679 ~~s~eEA~~~~~~~-lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s~i~~ 741 (752)
T 2zze_A 679 WLPRTTAEQXYGFR-LYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTERIQD 741 (752)
T ss_dssp EEEHHHHHHHHCGG-GCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEEEEET
T ss_pred ecCHHHHhhcchhh-hhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEEEEcC
Confidence 99999999986654 45 67788999999998 6899999999999999999999999999999
Q ss_pred CeEEEEEEeCh
Q 003144 789 GIRRITAVTTG 799 (844)
Q Consensus 789 gv~RI~~vtG~ 799 (844)
|++||+++||.
T Consensus 742 GvrRIeavtG~ 752 (752)
T 2zze_A 742 GVERIIFACGE 752 (752)
T ss_dssp TEEEEEEEECC
T ss_pred CEEEEEEEeCC
Confidence 99999999994
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
|---|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A | Back alignment and structure |
|---|
| >3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* | Back alignment and structure |
|---|
| >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 844 | ||||
| d1riqa2 | 236 | d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) | 3e-90 | |
| d1riqa1 | 221 | a.203.1.1 (A:237-457) Putative anticodon-binding d | 2e-45 | |
| d2e1ba2 | 129 | d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C | 1e-26 | |
| d1v4pa_ | 151 | d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo | 5e-23 | |
| d1nyra3 | 179 | d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR | 3e-13 | |
| d2e1ba1 | 87 | b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t | 3e-12 | |
| d1tkea2 | 162 | d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR | 4e-12 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Score = 282 bits (723), Expect = 3e-90
Identities = 124/253 (49%), Positives = 163/253 (64%), Gaps = 22/253 (8%)
Query: 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
A ++R+ F FFE K H KS+P+VP NDPTLLF NAGM +K +FLG
Sbjct: 4 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY----- 58
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+SFGDYFK EAIE+AWE +T+V
Sbjct: 59 KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVL 118
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCG 237
+LP ++LY + + D EA IW + +P+ R+ G +DNFW+MGD GPCG
Sbjct: 119 KLPKEKLYVSVYKDD--------EEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCG 170
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297
P SEI+ DR D +EIWN+VF+Q+NR+ +G L PLP ++DTG+G E
Sbjct: 171 PSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223
Query: 298 RLTSILQNKMSNY 310
R+ S+LQ K SN+
Sbjct: 224 RIASVLQGKNSNF 236
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 844 | |||
| d1riqa2 | 236 | Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ | 100.0 | |
| d1riqa1 | 221 | Putative anticodon-binding domain of alanyl-tRNA s | 100.0 | |
| d2e1ba2 | 129 | AlaX-M trans-editing enzyme, C-terminal domain {Py | 99.96 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.95 | |
| d1v4pa_ | 151 | Hypothetical protein PH0574 {Archaeon Pyrococcus h | 99.95 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.88 | |
| d2e1ba1 | 87 | AlaX-M trans-editing enzyme, N-terminal domain {Py | 99.53 | |
| d1j5wa_ | 281 | Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo | 95.21 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=3.4e-111 Score=863.07 Aligned_cols=234 Identities=53% Similarity=1.011 Sum_probs=225.7
Q ss_pred CCChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCC
Q 003144 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (844)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~QkCiR~gGkhn 136 (844)
.|+++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++|+ ++|+|++|||||+|||||
T Consensus 1 ~mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~-----~~r~~~~QkCiR~~gk~n 75 (236)
T d1riqa2 1 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHN 75 (236)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCS-----CSEEEEEEEEECEETTEE
T ss_pred CCCHHHHHHHHHHHHHhCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccC-----CCccccccccccccCccc
Confidence 389999999999999999999999999999999999999999999999999999886 589999999999999999
Q ss_pred CCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--CC
Q 003144 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (844)
Q Consensus 137 Dld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~--~~ 214 (844)
||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++ |+||+++|.+. +|
T Consensus 76 Dld~VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~~--------D~e~~~~w~~~~gi~ 147 (236)
T d1riqa2 76 DLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIP 147 (236)
T ss_dssp CTTTTTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCC
T ss_pred hhhhcCCcccchhhhhhccccccCchhHHHHHHHHHHHHHHHhccCccceEEEeecC--------cHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999999999999984 99999999987 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCc
Q 003144 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGL 294 (844)
Q Consensus 215 ~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGm 294 (844)
++||++++.+||||+||++||||||||||||+++. ..+++|||||||+|||||+|+++|++.|||+|+|||||
T Consensus 148 ~~rI~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~-------~~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGm 220 (236)
T d1riqa2 148 SERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGM 220 (236)
T ss_dssp GGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTT-------SCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred cccceecCCCCCccccCCCCCCCcceeEEEccccc-------cCCCCceeeeeeeeheeeeecCCCccccCCCCcccCCc
Confidence 99999999999999999999999999999998654 23568999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCc
Q 003144 295 GFERLTSILQNKMSNY 310 (844)
Q Consensus 295 GlERl~~vlqg~~sny 310 (844)
|||||||||||++|||
T Consensus 221 GLERi~~vlqg~~s~y 236 (236)
T d1riqa2 221 GLERIASVLQGKNSNF 236 (236)
T ss_dssp EHHHHHHHHTTCSSGG
T ss_pred cHHHHHHHHcCCCCCC
Confidence 9999999999999998
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|