Citrus Sinensis ID: 003146

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840----
MKETCSRSFLEHVKQLQVLSKEVASLARNSEYEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSLIKSSNSRLVSKQMEDLTQDMGRSLGLVLFASVELEVDVKEKIGSLHRELMNARFDKSLSSSPIQTPRPSLESGFVSDFESRKAVEMEEEIQEIVEERISLGIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQAQSSYF
ccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccc
ccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccHcccHHHcccccHHccHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc
MKETCSRSFLEHVKQLQVLSKEVASLARNSEYEIDMFNEFADIVEkfspvfdhlkdndkvmaTAPILKAVDSLEKELRRANSLIKSSNSRLVSKQMEDLTQDMGRSLGLVLFASVELEVDVKEKIGSLHRELMNARfdkslssspiqtprpslesgfvsdfesrKAVEMEEEIQEIVEERISLGIDDVMlqlkhgddkNLKFALLELRELISaktvdsewiNEAEIIAVLLNrlgsskpynrLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLldlsdlpaVWRRIGRIQGCIVMLVSMlsgndpvashdAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMeltdqsraslgedgaiepLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGIlsnlpvsnkKATELLKKTnllpslisaatsstitkthstpwlVESVAGILirftdpsdkklqqySVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRkskiskwlcvppsadafcevhdgycfvkstfclvkagavspliqvlegkereadETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQAQSSYF
mketcsrsflehvkqLQVLSKEVASLARNSEYEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRAnslikssnsrlvskQMEDLTQDMGRSLGLVLFASVELEVDVKEKIGSLHRELMNARfdkslssspiqtprpslesgfvsDFESRKAVEMEEEIQEIVEERISLGIDDVMLQLKHGDDKNLKFALLELRELIsaktvdsewinEAEIIAVLLnrlgsskpyNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGllldlsdlpaVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRaslgedgaiePLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVgilsnlpvsNKKATELLKKTNLLPSLISAAtsstitkthstpwLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQAQSSYF
MKETCSRSFLEHVKQLQVLSKEVASLARNSEYEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSLIKSSNSRLVSKQMEDLTQDMGRSLGLVLFASVELEVDVKEKIGSLHRELMNARFDKSLSSSPIQTPRPSLESGFVSDFESRKAvemeeeiqeiveeRISLGIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKlsalnalqnlsllaENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLlpslisaatsstitkthstpWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRllvkllssesvvakssasislaqlsqnslslRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVakllaqlellqaqSSYF
*********LEHVKQLQVLSKEVASLARNSEYEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAV**********************************RSLGLVLFASVELEVDVKEKIGSLH*******************************************IQEIVEERISLGIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVA***AGKLLNALS*NTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATAL****************GAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAH**********KENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSS******AAAVGILSNLPVS***ATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVV*********************SKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLEL********
**********************************DMFNEFADIVEKFSPVFDHL**************************************************RSLGLVLFASVELEVDVKEKIGSLHRELMNARFD***********************ES**AVEMEEEIQEIVEERISLGIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAAT*********TPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQA****F
MKETCSRSFLEHVKQLQVLSKEVASLARNSEYEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSLIKSSNSRLVSKQMEDLTQDMGRSLGLVLFASVELEVDVKEKIGSLHRELMNARFD****************SGFVSDFESRKAVEMEEEIQEIVEERISLGIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSS*********SISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQAQSSYF
******RSFLEHVKQLQVLSKEVASLARNSEYEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAVDSLEKELRRANSLIKSSNSRLVSKQMEDLTQDMGRSLGLVLFASVELEVDVKEKIGSLHRELMNARFDKSLSSSPIQTPRPSLESGFVSDFESRKAVEMEEEIQEIVEERISLGIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQAQSS*F
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKETCSRSFLEHVKQLQVLSKEVASLARNSEYEIDMFNEFADIVEKFSPVFDHLKDNDKVMATAPILKAxxxxxxxxxxxxxxxxxxxxxLVSKQMEDLTQDMGRSLGLVLFASVELEVDVKEKIGSLHRELMNARFDKSLSSSPIQTPRPSLESGFVxxxxxxxxxxxxxxxxxxxxxRISLGIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQAQSSYF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query844 2.2.26 [Sep-21-2011]
Q9LM76801 U-box domain-containing p yes no 0.759 0.800 0.277 1e-39
Q9SFX2811 U-box domain-containing p no no 0.765 0.796 0.273 3e-38
Q9CAA71033 Putative U-box domain-con no no 0.751 0.613 0.256 2e-35
O22193826 U-box domain-containing p no no 0.178 0.182 0.335 2e-11
Q5XEZ8707 U-box domain-containing p no no 0.183 0.219 0.341 4e-10
Q9SNC6660 U-box domain-containing p no no 0.242 0.310 0.289 2e-09
Q4I1B1559 Vacuolar protein 8 OS=Gib yes no 0.458 0.692 0.231 2e-09
Q4WVW4578 Vacuolar protein 8 OS=Neo yes no 0.458 0.669 0.236 3e-09
Q2U5T5578 Vacuolar protein 8 OS=Asp yes no 0.458 0.669 0.236 7e-09
Q5VRH9611 U-box domain-containing p no no 0.226 0.312 0.299 8e-09
>sp|Q9LM76|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1 Back     alignment and function desciption
 Score =  165 bits (418), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 188/677 (27%), Positives = 328/677 (48%), Gaps = 36/677 (5%)

Query: 203 ALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEK 262
           AL+ +R++      +   +  +++I ++++ L S+    R   +Q L+ +   + + K  
Sbjct: 122 ALMHVRQICRTIRSNRHGVRNSQLIHMIIDMLKSTSHRVRYKALQTLQVVVEGDDESKAI 181

Query: 263 MANVGSLSALVKSLTRDVEEQREA-VGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGND 321
           +A   ++  LVK L+ +  + REA V LL +LS   A+  +IG I G +++LV + S N 
Sbjct: 182 VAEGDTVRTLVKFLSHEPSKGREAAVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNS 241

Query: 322 PVAS--HDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT 379
              S    A + L  +  + +    MA  G  +PL+  L EGS  +K+ MA+ L  + L 
Sbjct: 242 ENVSIVEKADRTLENMERSEEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFLGELPLN 301

Query: 380 DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQL 439
           +  +  + +      LV + R G +  + +AL AL  +S    + + L+  GI+ PL++ 
Sbjct: 302 NDVKVLVAQTVG-SSLVDLMRSGDMPQREAALKALNKISSFEGSAKVLISKGILPPLIKD 360

Query: 440 LFSV--TSVLMTLREPASAILARIAQ-----SESILVNKDVAQQMLSLLNLCSPTIQYHL 492
           LF V   ++ + L+E ++ ILA I        ++ LV+++  + +L L++   P IQ  L
Sbjct: 361 LFYVGPNNLPIRLKEVSATILANIVNIGYDFDKATLVSENRVENLLHLISNTGPAIQCKL 420

Query: 493 LHALNSI-AAHSSASNVRRKMKENGAIHLLLPFL-METNANIRAAALNLVCTLSKDVYEE 550
           L  L  + +   +   V   +K +GAI  L+ F+ +  N ++R A++ L+  LS  + EE
Sbjct: 421 LEVLVGLTSCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIKLLHNLSPFMSEE 480

Query: 551 LAEQLGDK--YLNILVDITLSSTS-ENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLI 607
           LA+ L      L  LV I    T    E+AAA G+L+ LP  +   T+ + +      +I
Sbjct: 481 LAKALCGTAGQLGSLVAIISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKII 540

Query: 608 S---AATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQ--QYSVQHGVIRLLVKLLSS 662
           S         I         +E +  IL R T   +K+ +   +  +H V  L + LL S
Sbjct: 541 SKVFGIRQGDIKGMRFVNPFLEGLVRILARITFVFNKEARAINFCREHDVASLFLHLLQS 600

Query: 663 ESV-VAKSSASISLAQLSQNSLSLRKSKI--------SKWLCV--PPSADAFCEVHDGYC 711
                 +  ++++L  LS  S+ L +           S + CV  P   +  C++H G C
Sbjct: 601 NGQDNIQMVSAMALENLSLESIKLTRMPDPPPVNYCGSIFSCVRKPHVVNGLCKIHQGIC 660

Query: 712 FVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDE-TWESGSNYLAKLSGTQ 770
            ++ TFCLV+ GAV  L+ +L+ +  +  E  L AL+SLL+D    E G   L +  G +
Sbjct: 661 SLRETFCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEKGVKILDEADGIR 720

Query: 771 AIIKVL-ESGNAKAQEKALWILERIFRIEE--HRVKYGESAQVVLIDLAQNGDSRLKPAV 827
            I+ VL E+   +   +A+W++ERI RIE+    V   +S    L+D  QN D R +   
Sbjct: 721 HILNVLRENRTERLTRRAVWMVERILRIEDIAREVAEEQSLSAALVDAFQNADFRTRQIA 780

Query: 828 AKLLAQLELLQAQSSYF 844
              L  ++ +   SS F
Sbjct: 781 ENALKHIDKIPNFSSIF 797
Functions as an E3 ubiquitin-protein ligase. Prevents premature senescence probably by targeting proteins involved in this process for degradation. Promotes the degradation of AAO3 and thus represses abscisic acid (ABA) biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1 Back     alignment and function description
>sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1 Back     alignment and function description
>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 Back     alignment and function description
>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 Back     alignment and function description
>sp|Q4I1B1|VAC8_GIBZE Vacuolar protein 8 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=VAC8 PE=3 SV=4 Back     alignment and function description
>sp|Q4WVW4|VAC8_ASPFU Vacuolar protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=vac8 PE=3 SV=1 Back     alignment and function description
>sp|Q2U5T5|VAC8_ASPOR Vacuolar protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=vac8 PE=3 SV=1 Back     alignment and function description
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query844
255544043839 conserved hypothetical protein [Ricinus 0.989 0.995 0.675 0.0
224075822848 predicted protein [Populus trichocarpa] 0.990 0.985 0.676 0.0
147784040882 hypothetical protein VITISV_025370 [Viti 0.990 0.947 0.660 0.0
147775541845 hypothetical protein VITISV_010493 [Viti 0.983 0.982 0.685 0.0
225463749886 PREDICTED: U-box domain-containing prote 0.994 0.946 0.652 0.0
225449861882 PREDICTED: U-box domain-containing prote 0.990 0.947 0.664 0.0
357456825827 U-box domain-containing protein [Medicag 0.976 0.996 0.637 0.0
356541541831 PREDICTED: U-box domain-containing prote 0.973 0.989 0.629 0.0
449449124812 PREDICTED: putative U-box domain-contain 0.960 0.998 0.579 0.0
224053308579 predicted protein [Populus trichocarpa] 0.686 1.0 0.740 0.0
>gi|255544043|ref|XP_002513084.1| conserved hypothetical protein [Ricinus communis] gi|223548095|gb|EEF49587.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1107 bits (2862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/848 (67%), Positives = 692/848 (81%), Gaps = 13/848 (1%)

Query: 1   MKETCSRSFLEHVKQLQVLSKEVASLARNSEYEIDMFNEFADIVEKFSPVFDHLKDNDKV 60
           M+   SRSF E V +L+  ++EVASL+ NSE + ++  EF  +++KF+P+   LKDNDKV
Sbjct: 1   MQPCESRSFSEVVTELRASAEEVASLSMNSESDKEICAEFTVLLDKFTPILIELKDNDKV 60

Query: 61  MATAPILKAVDSLEKELRRANSLIKSSNSRLVSKQMEDLTQDMGRSLGLVLFASVELEVD 120
           M   P+ +AV SLEKEL+R   LIKS  SR   KQME+LTQD+GRSLGLVLFAS ++  +
Sbjct: 61  MDRPPVRQAVKSLEKELKRVKDLIKSPGSRSPIKQMEELTQDLGRSLGLVLFASTDVSPE 120

Query: 121 VKEKIGSLHRELMNARFDKSLSSSPIQTPRPSL----ESGFVSDFESRKAVEMEEEIQEI 176
            KEK+ +LH+ELMNARF+  LSSSP  +  PS     ESGFVS+ +S +  E+EE+I   
Sbjct: 121 FKEKVAALHKELMNARFNIRLSSSPSPSANPSPRPSQESGFVSEIDSER--EIEEDI--- 175

Query: 177 VEERISLGIDDVMLQLKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGS 236
               I+L  +DV+LQLK+G+D+  + AL  LR+ I  +T+D EW+++  +I +L  RLGS
Sbjct: 176 ----ITLSTEDVVLQLKYGNDEEFRLALWGLRDFIKDQTIDIEWVSDEGVIPILFKRLGS 231

Query: 237 SKPYNRLIMIQILRNLASENADYKEKMANVGSLSALVKSLTRDVEEQREAVGLLLDLSDL 296
           SKP +RL +IQILR+LAS+  + KE+MA+ G+LS LVKSLTRDV+E+REAVGLLL+LS++
Sbjct: 232 SKPNSRLTIIQILRSLASDKTEVKEQMADGGTLSLLVKSLTRDVDERREAVGLLLELSEV 291

Query: 297 PAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQ 356
            AV RRIGRIQGCI+MLV+ML+G+D VA+HDAGKLL ALSSNTQNALHMAEAGYFKPLV 
Sbjct: 292 SAVRRRIGRIQGCILMLVTMLNGDDSVAAHDAGKLLTALSSNTQNALHMAEAGYFKPLVH 351

Query: 357 YLKEGSDMSKILMATALSRMELTDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQN 416
           +LKEGSDMSKILMATA+SRMELTDQSRASLGEDGA+E LV+MF+ GKLE+KLSALNALQN
Sbjct: 352 HLKEGSDMSKILMATAISRMELTDQSRASLGEDGAVETLVKMFKAGKLESKLSALNALQN 411

Query: 417 LSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQ 476
           L+ L ENIQRL+ SGI+ PLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQ
Sbjct: 412 LAKLTENIQRLISSGIIVPLLQLLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQ 471

Query: 477 MLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAA 536
           MLSLLNL SP IQ+HLL ALNSIA+HS A+ +R+KMKENGA  LL+PFL ETN   R+AA
Sbjct: 472 MLSLLNLSSPVIQFHLLQALNSIASHSRATKIRKKMKENGAFQLLVPFLTETNIKNRSAA 531

Query: 537 LNLVCTLSKDVYEELAEQLGDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATEL 596
           LNL+ TLSKD  EEL EQLG+ +LN +V I  SS SE+EKAA +GI+SNLP+ NKKAT++
Sbjct: 532 LNLLYTLSKDSPEELMEQLGESHLNNIVSIVASSISESEKAAGIGIISNLPIGNKKATDI 591

Query: 597 LKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLL 656
           LKK +LLP LIS  +S   +   +T WL+E V+ I IRFT PSDKKLQ +S + G+I LL
Sbjct: 592 LKKYDLLPILISIMSSVESSSAPTTSWLMERVSDIFIRFTVPSDKKLQLFSAELGMIPLL 651

Query: 657 VKLLSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKST 716
           VKLLS  S+ AK  A+ SLAQLSQNSL+LRKS+ ++W C+P S DAFCEVHDGYC VKS+
Sbjct: 652 VKLLSIGSLGAKCRAATSLAQLSQNSLALRKSRKTRWTCMPSSGDAFCEVHDGYCIVKSS 711

Query: 717 FCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVL 776
           FCLVKAGAVSPLI+VLEG++RE DE VLGALA+L++DE WESGSNYLAK+S  Q +IKVL
Sbjct: 712 FCLVKAGAVSPLIKVLEGEDRETDEAVLGALATLVRDEIWESGSNYLAKMSVFQGLIKVL 771

Query: 777 ESGNAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLEL 836
           ESGN K QEKALWILERIFRIEEHR ++GESAQVVLIDLAQNGD RLK AVAK+LAQLEL
Sbjct: 772 ESGNVKGQEKALWILERIFRIEEHRKQFGESAQVVLIDLAQNGDLRLKSAVAKVLAQLEL 831

Query: 837 LQAQSSYF 844
           LQAQSSYF
Sbjct: 832 LQAQSSYF 839

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224075822|ref|XP_002304783.1| predicted protein [Populus trichocarpa] gi|222842215|gb|EEE79762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147784040|emb|CAN65599.1| hypothetical protein VITISV_025370 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147775541|emb|CAN62879.1| hypothetical protein VITISV_010493 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225463749|ref|XP_002265222.1| PREDICTED: U-box domain-containing protein 43-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225449861|ref|XP_002265237.1| PREDICTED: U-box domain-containing protein 43-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357456825|ref|XP_003598693.1| U-box domain-containing protein [Medicago truncatula] gi|355487741|gb|AES68944.1| U-box domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356541541|ref|XP_003539233.1| PREDICTED: U-box domain-containing protein 43-like [Glycine max] Back     alignment and taxonomy information
>gi|449449124|ref|XP_004142315.1| PREDICTED: putative U-box domain-containing protein 42-like [Cucumis sativus] gi|449530418|ref|XP_004172192.1| PREDICTED: putative U-box domain-containing protein 42-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224053308|ref|XP_002297756.1| predicted protein [Populus trichocarpa] gi|222845014|gb|EEE82561.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query844
TAIR|locus:2030462801 SAUL1 "senescence-associated E 0.454 0.479 0.272 1.6e-42
TAIR|locus:2014584811 PUB43 "plant U-box 43" [Arabid 0.504 0.525 0.240 1.3e-34
TAIR|locus:2096687355 AT3G01400 [Arabidopsis thalian 0.258 0.614 0.283 1.8e-13
TAIR|locus:2082682632 PUB14 "plant U-box 14" [Arabid 0.257 0.343 0.273 2e-11
UNIPROTKB|Q5VRH9611 PUB12 "U-box domain-containing 0.270 0.373 0.262 7.9e-12
TAIR|locus:2045334829 PUB4 "plant U-box 4" [Arabidop 0.235 0.240 0.282 3.9e-11
TAIR|locus:2162276660 PUB15 "Plant U-Box 15" [Arabid 0.239 0.306 0.262 8.6e-10
TAIR|locus:2099634408 AT3G03440 "AT3G03440" [Arabido 0.337 0.698 0.224 1.2e-09
ASPGD|ASPL0000008980579 AN12408 [Emericella nidulans ( 0.386 0.563 0.257 4.3e-09
TAIR|locus:2178818357 AT5G58680 "AT5G58680" [Arabido 0.225 0.532 0.278 5.4e-09
TAIR|locus:2030462 SAUL1 "senescence-associated E3 ubiquitin ligase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 323 (118.8 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
 Identities = 109/400 (27%), Positives = 197/400 (49%)

Query:   203 ALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEK 262
             AL+ +R++      +   +  +++I ++++ L S+    R   +Q L+ +   + + K  
Sbjct:   122 ALMHVRQICRTIRSNRHGVRNSQLIHMIIDMLKSTSHRVRYKALQTLQVVVEGDDESKAI 181

Query:   263 MANVGSLSALVKSLTRDVEEQREA-VGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGND 321
             +A   ++  LVK L+ +  + REA V LL +LS   A+  +IG I G +++LV + S N 
Sbjct:   182 VAEGDTVRTLVKFLSHEPSKGREAAVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNS 241

Query:   322 PVAS--HDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT 379
                S    A + L  +  + +    MA  G  +PL+  L EGS  +K+ MA+ L  + L 
Sbjct:   242 ENVSIVEKADRTLENMERSEEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFLGELPLN 301

Query:   380 DQSRASLGEDGAIEPLVRMFRVGKLEAKXXXXXXXXXXXXXXENIQRLVISGIVSPLLQL 439
             +  +  + +      LV + R G +  +               + + L+  GI+ PL++ 
Sbjct:   302 NDVKVLVAQTVG-SSLVDLMRSGDMPQREAALKALNKISSFEGSAKVLISKGILPPLIKD 360

Query:   440 LFSV--TSVLMTLREPASAILARIAQ-----SESILVNKDVAQQMLSLLNLCSPTIQYHL 492
             LF V   ++ + L+E ++ ILA I        ++ LV+++  + +L L++   P IQ  L
Sbjct:   361 LFYVGPNNLPIRLKEVSATILANIVNIGYDFDKATLVSENRVENLLHLISNTGPAIQCKL 420

Query:   493 LHALNSIAA-HSSASNVRRKMKENGAIHLLLPFL-METNANIRAAALNLVCTLSKDVYEE 550
             L  L  + +   +   V   +K +GAI  L+ F+ +  N ++R A++ L+  LS  + EE
Sbjct:   421 LEVLVGLTSCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIKLLHNLSPFMSEE 480

Query:   551 LAEQL-GDK-YLNILVDITLSSTS-ENEKAAAVGILSNLP 587
             LA+ L G    L  LV I    T    E+AAA G+L+ LP
Sbjct:   481 LAKALCGTAGQLGSLVAIISEKTPITEEQAAAAGLLAELP 520
GO:0000151 "ubiquitin ligase complex" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0016567 "protein ubiquitination" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI
GO:0005515 "protein binding" evidence=IPI
GO:0010115 "regulation of abscisic acid biosynthetic process" evidence=IMP
GO:0010150 "leaf senescence" evidence=IMP
GO:0010271 "regulation of chlorophyll catabolic process" evidence=IMP
GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP
GO:0090359 "negative regulation of abscisic acid biosynthetic process" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
TAIR|locus:2014584 PUB43 "plant U-box 43" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099634 AT3G03440 "AT3G03440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2178818 AT5G58680 "AT5G58680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query844
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 1e-07
pfam05804708 pfam05804, KAP, Kinesin-associated protein (KAP) 6e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 7e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 0.002
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information 
 Score = 55.1 bits (133), Expect = 1e-07
 Identities = 99/435 (22%), Positives = 183/435 (42%), Gaps = 70/435 (16%)

Query: 380 DQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVIS-GIVSPLLQ 438
           D+S+ ++   G I PLV++   G  +AK  +   L NL   +E+I+  V S G V  LL 
Sbjct: 478 DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW 537

Query: 439 LLFSVTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNS 498
           LL +           A  +   +  +++  ++     Q+ +LL    P  + H+L  L  
Sbjct: 538 LLKNGG--PKGQEIAAKTLTKLVRTADAATIS-----QLTALLLGDLPESKVHVLDVLGH 590

Query: 499 IAAHSSASN-VRRKMKENGAIHLLLPFLMETNANIR---AAALNLVCTLSKDVYEELAEQ 554
           + + +S  + VR     N A+  L+  L  +    +   A+ L  + +  +D+ E LA  
Sbjct: 591 VLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA-- 648

Query: 555 LGDKYLNILVDITLSSTSEN---EKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAAT 611
             D+ +N  + + L++ +E    + A A+  LS     N+K +   +    +  LI  A 
Sbjct: 649 -TDEIINPCIKL-LTNNTEAVATQSARALAALSRSIKENRKVSYAAEDA--IKPLIKLAK 704

Query: 612 SSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSA 671
           SS+I         V ++A +L      SD ++   ++   +I  L ++L   ++  K +A
Sbjct: 705 SSSIEVAEQA---VCALANLL------SDPEVAAEALAEDIILPLTRVLREGTLEGKRNA 755

Query: 672 SISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQV 731
           + +LAQL               L   P  D   +             +   G V  L+ +
Sbjct: 756 ARALAQL---------------LKHFPVDDVLKD------------SVQCRGTVLALVDL 788

Query: 732 LEGKEREADET--VLGALASLLQDETWESGSNYLAKL--------SGTQAIIKVLESGNA 781
           L   + ++  T   L ALA L + +    G+N+            S  + +++ L  G+ 
Sbjct: 789 LNSTDLDSSATSEALEALALLARTKG---GANFSHPPWAVLAEVPSSLEPLVRCLAEGHP 845

Query: 782 KAQEKALWILERIFR 796
             Q+KA+ IL R+ R
Sbjct: 846 LVQDKAIEILSRLCR 860

Length = 2102
>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP) Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 844
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.98
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.97
PF05804708 KAP: Kinesin-associated protein (KAP) 99.96
PF05804708 KAP: Kinesin-associated protein (KAP) 99.93
KOG1048717 consensus Neural adherens junction protein Plakoph 99.86
KOG1048717 consensus Neural adherens junction protein Plakoph 99.84
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.75
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.73
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.72
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.65
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.62
PRK09687280 putative lyase; Provisional 99.58
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.57
KOG1293 678 consensus Proteins containing armadillo/beta-caten 99.56
PRK09687280 putative lyase; Provisional 99.56
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.53
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.52
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.5
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.5
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.47
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.47
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.45
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.43
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.42
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.42
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.4
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.37
KOG1293678 consensus Proteins containing armadillo/beta-caten 99.36
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.29
PTZ00429 746 beta-adaptin; Provisional 99.21
PTZ00429 746 beta-adaptin; Provisional 99.19
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.11
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.08
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 98.99
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 98.94
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.93
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.78
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.78
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 98.74
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.73
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.73
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.68
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.67
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.61
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.6
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.59
TIGR02270410 conserved hypothetical protein. Members are found 98.54
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.49
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.45
TIGR02270410 conserved hypothetical protein. Members are found 98.45
KOG1242569 consensus Protein containing adaptin N-terminal re 98.42
KOG18241233 consensus TATA-binding protein-interacting protein 98.36
COG1413335 FOG: HEAT repeat [Energy production and conversion 98.36
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.35
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.34
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.34
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.34
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 98.34
PF05536543 Neurochondrin: Neurochondrin 98.29
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 98.29
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.28
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.27
COG1413335 FOG: HEAT repeat [Energy production and conversion 98.26
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 98.25
KOG3678 832 consensus SARM protein (with sterile alpha and arm 98.24
KOG4646173 consensus Uncharacterized conserved protein, conta 98.22
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.22
PF05536543 Neurochondrin: Neurochondrin 98.19
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.15
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.14
KOG3678832 consensus SARM protein (with sterile alpha and arm 98.09
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.09
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 98.07
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.06
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 98.03
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.02
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.0
KOG1242569 consensus Protein containing adaptin N-terminal re 98.0
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.98
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.92
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.91
KOG4646173 consensus Uncharacterized conserved protein, conta 97.85
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.78
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.78
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.77
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.69
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 97.68
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.66
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.61
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 97.6
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.59
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.58
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.58
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.57
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.57
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.55
KOG2734536 consensus Uncharacterized conserved protein [Funct 97.52
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.47
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.42
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 97.34
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 97.29
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 97.26
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 97.24
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 97.21
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 97.11
KOG0567289 consensus HEAT repeat-containing protein [General 97.08
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.05
KOG0567289 consensus HEAT repeat-containing protein [General 97.03
COG5369743 Uncharacterized conserved protein [Function unknow 96.92
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.86
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.81
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.8
KOG2734536 consensus Uncharacterized conserved protein [Funct 96.74
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.73
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.7
PF05659147 RPW8: Arabidopsis broad-spectrum mildew resistance 96.61
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 96.59
KOG4535 728 consensus HEAT and armadillo repeat-containing pro 96.56
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 96.53
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.5
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.41
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.27
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.15
COG5369 743 Uncharacterized conserved protein [Function unknow 96.12
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 96.05
KOG2062 929 consensus 26S proteasome regulatory complex, subun 96.05
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.03
KOG4535728 consensus HEAT and armadillo repeat-containing pro 95.97
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.8
PF11841160 DUF3361: Domain of unknown function (DUF3361) 95.78
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 95.75
PF11841160 DUF3361: Domain of unknown function (DUF3361) 95.72
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.71
KOG12481176 consensus Uncharacterized conserved protein [Funct 95.7
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 95.57
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 95.53
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 95.48
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 95.36
KOG3036293 consensus Protein involved in cell differentiation 95.24
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.12
PF05004309 IFRD: Interferon-related developmental regulator ( 94.96
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 94.9
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 94.85
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 94.82
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 94.51
KOG3036293 consensus Protein involved in cell differentiation 94.4
KOG4464532 consensus Signaling protein RIC-8/synembryn (regul 94.21
PRK14707 2710 hypothetical protein; Provisional 94.21
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 94.08
COG5096 757 Vesicle coat complex, various subunits [Intracellu 93.94
PF05004309 IFRD: Interferon-related developmental regulator ( 93.89
KOG22741005 consensus Predicted importin 9 [Intracellular traf 93.83
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.76
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 93.38
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 93.23
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 93.17
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.12
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 92.75
KOG4653982 consensus Uncharacterized conserved protein [Funct 92.74
PF13764802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 92.25
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 92.18
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 91.77
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 91.66
KOG12481176 consensus Uncharacterized conserved protein [Funct 91.48
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 91.45
KOG0414 1251 consensus Chromosome condensation complex Condensi 91.19
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 91.13
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 91.01
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 90.7
KOG2025 892 consensus Chromosome condensation complex Condensi 90.57
PF07814361 WAPL: Wings apart-like protein regulation of heter 90.52
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 90.46
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 90.07
PRK14707 2710 hypothetical protein; Provisional 89.71
KOG22741005 consensus Predicted importin 9 [Intracellular traf 89.37
PF07814361 WAPL: Wings apart-like protein regulation of heter 89.35
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 89.08
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 88.79
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 88.47
KOG2062929 consensus 26S proteasome regulatory complex, subun 87.77
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 87.6
PF11701157 UNC45-central: Myosin-binding striated muscle asse 86.2
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 85.59
KOG2956516 consensus CLIP-associating protein [General functi 85.39
PF12719 298 Cnd3: Nuclear condensing complex subunits, C-term 85.05
KOG2032533 consensus Uncharacterized conserved protein [Funct 84.74
PF08045257 CDC14: Cell division control protein 14, SIN compo 84.57
smart00638574 LPD_N Lipoprotein N-terminal Domain. 84.56
KOG2032533 consensus Uncharacterized conserved protein [Funct 84.44
KOG2025 892 consensus Chromosome condensation complex Condensi 83.97
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 83.66
PF06371187 Drf_GBD: Diaphanous GTPase-binding Domain; InterPr 83.56
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 82.86
PF11701157 UNC45-central: Myosin-binding striated muscle asse 82.73
KOG2956516 consensus CLIP-associating protein [General functi 81.07
PF08045257 CDC14: Cell division control protein 14, SIN compo 80.92
KOG1243690 consensus Protein kinase [General function predict 80.66
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 80.21
PF1036392 DUF2435: Protein of unknown function (DUF2435) 80.1
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.7e-52  Score=504.63  Aligned_cols=612  Identities=20%  Similarity=0.236  Sum_probs=514.3

Q ss_pred             ccHHHHHHHHcCC--ChHHHHHHHHHHHHHHhcCCcChHHHhh-CCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhh
Q 003146          183 LGIDDVMLQLKHG--DDKNLKFALLELRELISAKTVDSEWINE-AEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADY  259 (844)
Q Consensus       183 ~~i~~lv~~L~~~--~~~~~~~a~~~l~~L~~~~~~~~~~i~~-~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~  259 (844)
                      ..+..+++.|.++  +...+..++..+..+.+.++.+|..+.+ .|++|.|+.+|.+++...+..++.+|.++. ..+++
T Consensus        13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS-~~e~n   91 (2102)
T PLN03200         13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLC-KEEDL   91 (2102)
T ss_pred             HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHH
Confidence            3477888888876  5567788899999999999888888875 789999999999999999999999999996 45778


Q ss_pred             HHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCCC---hhHHHHhhhhCcHHHHHHhhcCC---ChHHHHHHHHHH
Q 003146          260 KEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLP---AVWRRIGRIQGCIVMLVSMLSGN---DPVASHDAGKLL  332 (844)
Q Consensus       260 ~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~~---~~~~~i~~~~g~i~~Lv~lL~s~---d~~~~~~A~~~L  332 (844)
                      +..++..|+++.|+.+|.+ +.+.|+.|+.+|..|+.++   .++..++...|+||+|+.++.+.   |..+++.++.+|
T Consensus        92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL  171 (2102)
T PLN03200         92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL  171 (2102)
T ss_pred             HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence            8888899999999999988 4678999999999999874   34545554599999999999875   344677889999


Q ss_pred             HHhccCCccHH-HHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhhhhhhhcCchHHHHHHhhcC-CHHHHHH
Q 003146          333 NALSSNTQNAL-HMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT-DQSRASLGEDGAIEPLVRMFRVG-KLEAKLS  409 (844)
Q Consensus       333 ~nLs~~~~~~~-~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~  409 (844)
                      .||+.+.+++. .+++.|+++.++++|+++++..+.+|+++|.+++.+ ++.+..+.+.|+||.|+++|+++ ++.+|+.
T Consensus       172 ~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~  251 (2102)
T PLN03200        172 RNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAE  251 (2102)
T ss_pred             HHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHH
Confidence            99999888864 567999999999999999999999999999988876 57899999999999999999875 4589999


Q ss_pred             HHHHHHHhhcC-cccHHHHHHcCChHHHHHHhhccCCc------chhhHHHHHHHHHHHhcCh-h---------------
Q 003146          410 ALNALQNLSLL-AENIQRLVISGIVSPLLQLLFSVTSV------LMTLREPASAILARIAQSE-S---------------  466 (844)
Q Consensus       410 A~~aL~nLs~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~------~~~l~~~a~~~L~~l~~~~-~---------------  466 (844)
                      |+++|+||+.+ ++++..+++.|+||+|++++..+..+      ...+++.|.|+|.|++.+. .               
T Consensus       252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~  331 (2102)
T PLN03200        252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSP  331 (2102)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchH
Confidence            99999999986 67899999999999999999754421      2346899999999988741 0               


Q ss_pred             -----------hh--------------------------------------------------------cccchHHHHHH
Q 003146          467 -----------IL--------------------------------------------------------VNKDVAQQMLS  479 (844)
Q Consensus       467 -----------~l--------------------------------------------------------~~~~~i~~Lv~  479 (844)
                                 ++                                                        .+.++++.|+.
T Consensus       332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~  411 (2102)
T PLN03200        332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVG  411 (2102)
T ss_pred             HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhh
Confidence                       00                                                        01122334455


Q ss_pred             hhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHHHHhchhh
Q 003146          480 LLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKY  559 (844)
Q Consensus       480 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~~~l~~~~  559 (844)
                      ++..++.++|+.++++|.+||.++  .+.++.+.+.|+++.|+++|.+++..+++.|+++|++++...++........++
T Consensus       412 LL~~~~~evQ~~Av~aL~~L~~~~--~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa  489 (2102)
T PLN03200        412 LITMATADVQEELIRALSSLCCGK--GGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG  489 (2102)
T ss_pred             hhccCCHHHHHHHHHHHHHHhCCC--HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            555566788999999999999886  788999999999999999999999999999999999998766655555666779


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCC
Q 003146          560 LNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPS  639 (844)
Q Consensus       560 l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~  639 (844)
                      ++.|+++|. +++..++..|+++|+|++.++.+.+..+.+.|+++.|+++|++++.       ..++.++++|.+++...
T Consensus       490 IP~LV~LL~-s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~-------~~q~~Aa~AL~nLi~~~  561 (2102)
T PLN03200        490 IPPLVQLLE-TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGP-------KGQEIAAKTLTKLVRTA  561 (2102)
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCH-------HHHHHHHHHHHHHHhcc
Confidence            999999998 5788999999999999998777778888899999999999988753       46789999999986443


Q ss_pred             CHHH---------------H---------------------HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhhcCc
Q 003146          640 DKKL---------------Q---------------------QYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNSL  683 (844)
Q Consensus       640 ~~~~---------------~---------------------~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~~ls~~~~  683 (844)
                      +.+.               +                     ......|++|.|+++++++++.+|+.|+++|.++..+..
T Consensus       562 d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~  641 (2102)
T PLN03200        562 DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ  641 (2102)
T ss_pred             chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh
Confidence            2211               1                     011246899999999999999999999999999997665


Q ss_pred             cccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhhccccchhhhHHH
Q 003146          684 SLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYL  763 (844)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~~~~~~~~~~~~i  763 (844)
                      ..+                              ..++.+|+|+||+.+|.+++.+++..|++||.++..... +.....+
T Consensus       642 d~~------------------------------~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~~  690 (2102)
T PLN03200        642 DLC------------------------------ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVSY  690 (2102)
T ss_pred             HHH------------------------------HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence            533                              567889999999999999999999999999999997543 2344566


Q ss_pred             HhcCChHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhHhhccc-cchhHHhhhhcCCCCchHHHHHHHHHHhh
Q 003146          764 AKLSGTQAIIKVLESGNAKAQEKALWILERIFRIEEHRVKYGES-AQVVLIDLAQNGDSRLKPAVAKLLAQLEL  836 (844)
Q Consensus       764 ~~~g~i~~lv~ll~~~~~~~~~~A~~~L~~i~~~~~~~~~~~~~-a~~~Lv~ll~~~~~~~~~~aa~~L~~l~~  836 (844)
                      .+.|+|+||+++|.+++..+++.|+.+|++|+...+.+..+... +..+|++++++|++..|+.|+.+|.+|-.
T Consensus       691 v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~  764 (2102)
T PLN03200        691 AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK  764 (2102)
T ss_pred             HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999888777654 35799999999999999999999999853

>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query844
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 6e-56
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-33
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-29
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 3e-18
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 5e-55
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 1e-34
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-23
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 2e-12
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 6e-55
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-29
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-27
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-25
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-15
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 8e-14
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 6e-27
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 2e-22
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 5e-25
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 6e-22
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 4e-18
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-23
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 5e-18
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 5e-09
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-07
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-21
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-19
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 7e-19
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 8e-14
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-13
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 5e-12
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-10
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 4e-07
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 4e-07
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-21
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-17
3nmz_A458 APC variant protein; protein-protein complex, arma 2e-12
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 1e-20
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 4e-17
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 2e-16
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-19
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 9e-19
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-18
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-15
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 5e-15
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 4e-13
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 7e-11
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-08
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-07
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 4e-07
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 6e-07
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-06
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-05
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 4e-18
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-16
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 3e-10
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 1e-17
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 1e-14
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-11
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 7e-09
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 3e-06
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 6e-06
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 1e-04
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 9e-10
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 5e-08
3grl_A651 General vesicular transport factor P115; vesicle t 4e-08
3grl_A 651 General vesicular transport factor P115; vesicle t 7e-06
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
 Score =  203 bits (517), Expect = 6e-56
 Identities = 96/604 (15%), Positives = 197/604 (32%), Gaps = 42/604 (6%)

Query: 251 NLASENADYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGC 309
           NL +   D         ++  L K L   D     +A  ++  LS   A    I R    
Sbjct: 1   NLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 57

Query: 310 IVMLVSML-SGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKIL 368
           +  +V  + + ND   +      L+ LS + +  L + ++G    LV+ L    D     
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFY 117

Query: 369 MATALSRMEL-TDQSRASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLL-AENIQR 426
             T L  + L  + ++ ++   G ++ +V +     ++      + LQ L+    E+   
Sbjct: 118 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 177

Query: 427 LVISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSESI---LVNKDVAQQMLSLLNL 483
           ++ SG    L+ ++ + T     L    S +L  ++   S    +V     Q +   L  
Sbjct: 178 ILASGGPQALVNIMRTYTY--EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235

Query: 484 CSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTL 543
            S  +  + L  L +++  +      ++    G +  L+  L   + N+   A  ++  L
Sbjct: 236 PSQRLVQNCLWTLRNLSDAA-----TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

Query: 544 SKDVYEELAEQLGDKYLNILVDITL-SSTSENEKAAAVGILSNL---PVSNKKATELLKK 599
           + + Y+          +  LV   L +   E+    A+  L +L       + A   ++ 
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 600 TNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKL 659
              LP ++            S   L+++  G++                + G I  LV+L
Sbjct: 351 HYGLPVVVKLLHPP------SHWPLIKATVGLIRNLA--LCPANHAPLREQGAIPRLVQL 402

Query: 660 LSSESVVAKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCL 719
           L       +   S+   Q         +  +               +H     V +   +
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG---------CTGALHILARDVHNRIVI 453

Query: 720 VKAGAVSPLIQVLEGKEREADETVLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESG 779
                +   +Q+L            G L  L QD+     +  +     T  + ++L S 
Sbjct: 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK---EAAEAIEAEGATAPLTELLHSR 510

Query: 780 NAKAQEKALWILERIFRIEEHRVKYGESAQVVLIDLAQNGDSRLKPAVAKLLAQLELLQA 839
           N      A  +L R+   +    K   S + +   L +             L      + 
Sbjct: 511 NEGVATYAAAVLFRMSEDKPQDYKKRLSVE-LTSSLFRTEPMAWNETADLGLDIGAQGEP 569

Query: 840 QSSY 843
               
Sbjct: 570 LGYR 573
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query844
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 100.0
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 100.0
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 100.0
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 100.0
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 100.0
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 100.0
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 100.0
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 100.0
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 100.0
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 100.0
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 100.0
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 100.0
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 100.0
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 100.0
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 100.0
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 100.0
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 100.0
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 100.0
3nmz_A458 APC variant protein; protein-protein complex, arma 100.0
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 100.0
3nmz_A458 APC variant protein; protein-protein complex, arma 100.0
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 100.0
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 100.0
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.97
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.96
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.96
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.95
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.94
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.91
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.9
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.9
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.9
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.88
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 99.87
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.87
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 99.86
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.83
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.83
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.81
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.8
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.76
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.75
1qgr_A876 Protein (importin beta subunit); transport recepto 99.7
3grl_A651 General vesicular transport factor P115; vesicle t 99.7
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.7
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.67
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.67
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.66
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.63
3grl_A651 General vesicular transport factor P115; vesicle t 99.6
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.56
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.55
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.5
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.49
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.49
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.49
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.36
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.34
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.32
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.31
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.23
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.23
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.21
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.16
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 98.97
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.74
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 98.73
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.52
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.41
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.35
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.26
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.17
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.12
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.11
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 98.09
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.05
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.01
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.01
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.88
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 97.88
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.87
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 97.84
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.84
2x1g_F 971 Cadmus; transport protein, developmental protein, 97.82
2x19_B 963 Importin-13; nuclear transport, protein transport; 97.63
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.62
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.57
2x1g_F 971 Cadmus; transport protein, developmental protein, 97.54
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.46
2x19_B 963 Importin-13; nuclear transport, protein transport; 97.36
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.35
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 97.13
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 97.02
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.79
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.27
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.25
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.12
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 96.06
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 95.87
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 95.86
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 95.43
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 95.17
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 94.9
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 94.8
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.66
3ebb_A304 Phospholipase A2-activating protein; armadillo rep 92.8
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 91.83
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 91.28
3ebb_A304 Phospholipase A2-activating protein; armadillo rep 90.89
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 89.72
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 89.68
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 89.6
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 89.29
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 88.12
3c2g_A619 SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev 88.04
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 86.79
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 84.09
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 83.01
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 82.65
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 82.21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=2.7e-41  Score=396.67  Aligned_cols=514  Identities=16%  Similarity=0.146  Sum_probs=421.1

Q ss_pred             chHHHHHHHHHHHhHhcCh--hhHHHHhcCCcHHHHHHHhcC-CHHHHHHHHHHHHHccCC-ChhHHHHhhhhCcHHHHH
Q 003146          239 PYNRLIMIQILRNLASENA--DYKEKMANVGSLSALVKSLTR-DVEEQREAVGLLLDLSDL-PAVWRRIGRIQGCIVMLV  314 (844)
Q Consensus       239 ~~~~~~a~~~L~~L~~~~~--~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv  314 (844)
                      .++|.++..+|..+-..-.  ..++.+.+ -.-.++-..+.. +.+..-.|++++.++... ++....++...|++|.|+
T Consensus       218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li  296 (810)
T 3now_A          218 GSSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL  296 (810)
T ss_dssp             TTHHHHHHHHHHHHHHTCCSHHHHHHHHH-HHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhccchhHHHHHH-HHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence            5789999999988843311  11222211 112223333333 567778899999998765 456666664589999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhccCCccHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcCc--hhhhhhhhcCc-
Q 003146          315 SMLSGNDPVASHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTD--QSRASLGEDGA-  391 (844)
Q Consensus       315 ~lL~s~d~~~~~~A~~~L~nLs~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~-  391 (844)
                      .+++++++..++.|++++.+++.++.+|..+.+.|+ ++|+.+++++++.++..|+.+|.+++...  +.+..+.+.|+ 
T Consensus       297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i  375 (810)
T 3now_A          297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA  375 (810)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence            999999999999999999999999888999999875 99999999998889999999999997532  34434444455 


Q ss_pred             ---hHHHHHHhhcC--CHHHHHHHHHHHHHhhcCcccHHHHH-HcCChHHHHHHhhccCCcchhhHHHHHHHHHHHhcCh
Q 003146          392 ---IEPLVRMFRVG--KLEAKLSALNALQNLSLLAENIQRLV-ISGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSE  465 (844)
Q Consensus       392 ---i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~L~~l~~~~  465 (844)
                         ++.|+++|.++  ++++++.|+++|.+|+.+++.+..++ +.|++|+|+.+|.+.+   ..++..++++|.||+.+.
T Consensus       376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d---~~i~~~al~~L~NLt~~~  452 (810)
T 3now_A          376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGN---QSCLYGVVTTFVNLCNAY  452 (810)
T ss_dssp             HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCC---hHHHHHHHHHHHHHcCCc
Confidence               55677888887  78999999999999999999999988 4899999999998754   357899999999999852


Q ss_pred             ------------------------------------hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHH
Q 003146          466 ------------------------------------SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVR  509 (844)
Q Consensus       466 ------------------------------------~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~  509 (844)
                                                          ..+.+.|+++.|+.+++++++.+|+.|+++|.||+.+   .+++
T Consensus       453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d---~~~r  529 (810)
T 3now_A          453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL---KELR  529 (810)
T ss_dssp             CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS---HHHH
T ss_pred             hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC---HHHH
Confidence                                                2345668999999999999999999999999999975   6799


Q ss_pred             HHHHhCCcHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhHHHH--HHhchhhHHHHHHHhcCCCCHHHHHHHHHHHhcCC
Q 003146          510 RKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELA--EQLGDKYLNILVDITLSSTSENEKAAAVGILSNLP  587 (844)
Q Consensus       510 ~~i~~~g~i~~Lv~ll~~~~~~v~~~A~~~L~~ls~~~~~~i~--~~l~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~  587 (844)
                      ..+.+.|++++|+.++.++++.+++.|+++|.+++.+......  .....+++++|+.+|..+.+...+..|+.+|.||+
T Consensus       530 ~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa  609 (810)
T 3now_A          530 GKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA  609 (810)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999876543321  00112489999999985546566678999999999


Q ss_pred             CCCHHHHHHHHhCCChHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhccCCCCHHHHHHHHH-cCCHHHHHHHhccCCHH
Q 003146          588 VSNKKATELLKKTNLLPSLISAATSSTITKTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQ-HGVIRLLVKLLSSESVV  666 (844)
Q Consensus       588 ~~~~~~~~~l~~~~~v~~L~~ll~~~~~~~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~  666 (844)
                      ..+++.++.+.++|+++.|+.++.+++.       .+++.|+++++|++.  .++.+..+.+ .|.+|.|+.++++++..
T Consensus       610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~-------~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~  680 (810)
T 3now_A          610 SMNESVRQRIIKEQGVSKIEYYLMEDHL-------YLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEE  680 (810)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHHHSCCT-------THHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHcCCCH-------HHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence            9888899999999999999999987653       478899999999997  4455666665 78999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhh-cCCchHHHHhhcCCChhhHHHHHH
Q 003146          667 AKSSASISLAQLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVK-AGAVSPLIQVLEGKEREADETVLG  745 (844)
Q Consensus       667 vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~-~~ai~~Lv~lL~~~~~~v~~~A~~  745 (844)
                      +|+.|+++|+|++.+++...                              ..+++ +|++++|+++|.+++++++..|++
T Consensus       681 vq~~Aa~ALanLt~~s~~~~------------------------------~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~  730 (810)
T 3now_A          681 TATACAGALAIITSVSVKCC------------------------------EKILAIASWLDILHTLIANPSPAVQHRGIV  730 (810)
T ss_dssp             HHHHHHHHHHHHHHHCHHHH------------------------------HHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHH------------------------------HHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence            99999999999997544322                              56667 899999999999999999999999


Q ss_pred             HHHhhhccccchhhhHHHHhcCChHHHHHHhhc---CCHHHHHHHHHHHHHHHhhhhhh
Q 003146          746 ALASLLQDETWESGSNYLAKLSGTQAIIKVLES---GNAKAQEKALWILERIFRIEEHR  801 (844)
Q Consensus       746 AL~~L~~~~~~~~~~~~i~~~g~i~~lv~ll~~---~~~~~~~~A~~~L~~i~~~~~~~  801 (844)
                      ||.|++..+  ....+.|.++|++++|+.+++.   ++.++.+.|..+|+.+..++.+.
T Consensus       731 aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          731 IILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence            999999743  2357889999999999999954   47999999999999999877654
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 844
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 4e-20
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 2e-15
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 6e-15
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 3e-09
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 2e-13
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 2e-13
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 4e-13
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 1e-10
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 3e-04
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 5e-12
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 1e-11
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 2e-09
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 2e-06
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-06
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 2e-05
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.6 bits (228), Expect = 4e-20
 Identities = 77/532 (14%), Positives = 162/532 (30%), Gaps = 24/532 (4%)

Query: 267 GSLSALVKSLTR-DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSML-SGNDPVA 324
            ++  L K L   D     +A  ++  LS   A    I R    +  +V  + + ND   
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 325 SHDAGKLLNALSSNTQNALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELTDQ-SR 383
           +      L+ LS + +  L + ++G    LV+ L    D       T L  + L  + ++
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 384 ASLGEDGAIEPLVRMFRVGKLEAKLSALNALQNLSLLAENIQRLVI-SGIVSPLLQLLFS 442
            ++   G ++ +V +     ++      + LQ L+   +  + +++ SG    L+ ++ +
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 443 VTSVLMTLREPASAILARIAQSESILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAH 502
            T   +         +  +  S    + +    Q L L                    + 
Sbjct: 197 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256

Query: 503 SSASNVRRKMKENGAIHLLLPFLMETNANIRAAALNLVCTLSKDVYEELAEQLGDKYLNI 562
           ++      +      + LL    +           NL C   K+          +  +  
Sbjct: 257 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316

Query: 563 LVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAATSSTITKTHSTP 622
           ++              A+  L++     + A   ++    LP ++           H   
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL--------HPPS 368

Query: 623 WLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLAQLSQNS 682
                 A + +               + G I  LV+LL       +   S+   Q     
Sbjct: 369 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428

Query: 683 LSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADET 742
             +R  +I +       A            V     +     +   +Q+L          
Sbjct: 429 -GVRMEEIVEGCT---GALHILARDVHNRIV-----IRGLNTIPLFVQLLYSPIENIQRV 479

Query: 743 VLGALASLLQDETWESGSNYLAKLSGTQAIIKVLESGNAKAQEKALWILERI 794
             G L  L QD   +  +  +     T  + ++L S N      A  +L R+
Sbjct: 480 AAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query844
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.97
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.97
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.96
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.94
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.84
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.74
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.67
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.67
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.52
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.51
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.28
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.25
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.08
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.05
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.04
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.01
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.93
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.89
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.85
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.81
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.7
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.56
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.51
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.45
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.45
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.18
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 98.14
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 97.87
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.69
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.15
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 94.55
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 94.3
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 92.96
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 92.21
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 91.75
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 89.25
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-38  Score=366.78  Aligned_cols=487  Identities=18%  Similarity=0.172  Sum_probs=412.7

Q ss_pred             CCCHHHHHHHhCCCCchHHHHHHHHHHHhHhcChhhHHHH-hcCCcHHHHHHHhcC--CHHHHHHHHHHHHHccCCChhH
Q 003146          224 AEIIAVLLNRLGSSKPYNRLIMIQILRNLASENADYKEKM-ANVGSLSALVKSLTR--DVEEQREAVGLLLDLSDLPAVW  300 (844)
Q Consensus       224 ~~~~p~l~~lL~s~~~~~~~~a~~~L~~L~~~~~~~~~~i-~~~g~i~~Lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~  300 (844)
                      .+++|.|+++|++++..++..++.+|++++.. ...+..+ ...|.++.+++.|.+  +.+.++.|+.+|++++.+++.+
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            35799999999999999999999999999754 3444444 445679999999976  4678999999999999999999


Q ss_pred             HHHhhhhCcHHHHHHhhcCCChHHHHHHHHHHHHhccCCc-cHHHHHHcCChHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 003146          301 RRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQ-NALHMAEAGYFKPLVQYLKEGSDMSKILMATALSRMELT  379 (844)
Q Consensus       301 ~~i~~~~g~i~~Lv~lL~s~d~~~~~~A~~~L~nLs~~~~-~~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~  379 (844)
                      ..+.+ .|+||.|+.+|+++++.++..|+++|.||+.+.+ .+..+.+.|++++|+.+|++++..++..++.+|.+++..
T Consensus        95 ~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_          95 LAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHH-CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh
Confidence            99998 9999999999999999999999999999997555 567777999999999999999999999999999999976


Q ss_pred             c-hhhhhhhhcCchHHHHHHhhcCC-HHHHHHHHHHHHHhhcCcccHHHHHHcCChHHHHHHhhccCCcchhhHHHHHHH
Q 003146          380 D-QSRASLGEDGAIEPLVRMFRVGK-LEAKLSALNALQNLSLLAENIQRLVISGIVSPLLQLLFSVTSVLMTLREPASAI  457 (844)
Q Consensus       380 ~-~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~l~~~a~~~  457 (844)
                      + +++..+...|++++|+.+++..+ ...+..++.++.|++.+++++..+++.|++++|+.++.+.+   ..++..++++
T Consensus       174 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~---~~~~~~a~~~  250 (529)
T d1jdha_         174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS---QRLVQNCLWT  250 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC---HHHHHHHHHH
T ss_pred             hhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccc---hhhhhhhhhH
Confidence            4 67788888999999999997655 57888999999999999999999999999999999998765   4578899999


Q ss_pred             HHHHhcCh-hhhcccchHHHHHHhhccCChHHHHHHHHHHHHhhcCCChhHHHHHHHhCCcHHHHHHHhc--cCCHHHHH
Q 003146          458 LARIAQSE-SILVNKDVAQQMLSLLNLCSPTIQYHLLHALNSIAAHSSASNVRRKMKENGAIHLLLPFLM--ETNANIRA  534 (844)
Q Consensus       458 L~~l~~~~-~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~  534 (844)
                      |.+++... ......++++.|+.+++++++.+++.++++|.+++.++  ...+..+.+.|+++.|+.++.  +++++++.
T Consensus       251 l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~  328 (529)
T d1jdha_         251 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDREDITE  328 (529)
T ss_dssp             HHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccch--hHHHHHHHHhhhHHHHHHHHHhhhcchhHHH
Confidence            99998765 33345688999999999999999999999999999875  788888999999999999885  45578999


Q ss_pred             HHHHHHHHhhhhhh--HHHHHHh-chhhHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhCCChHHHHHHhh
Q 003146          535 AALNLVCTLSKDVY--EELAEQL-GDKYLNILVDITLSSTSENEKAAAVGILSNLPVSNKKATELLKKTNLLPSLISAAT  611 (844)
Q Consensus       535 ~A~~~L~~ls~~~~--~~i~~~l-~~~~l~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~~~~~l~~~~~v~~L~~ll~  611 (844)
                      .|+.+|++++....  +.....+ ..++++.|+.++....+...+..+++++.+++. ++..+..+.+.|+++.|++++.
T Consensus       329 ~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~-~~~~~~~l~~~g~i~~L~~lL~  407 (529)
T d1jdha_         329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLV  407 (529)
T ss_dssp             HHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcch-hhhhhhhhhhcccHHHHHHHHh
Confidence            99999999985543  2222222 345789999999876777778889999999988 5677889999999999999997


Q ss_pred             cCCCC---------------CCCCchhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 003146          612 SSTIT---------------KTHSTPWLVESVAGILIRFTDPSDKKLQQYSVQHGVIRLLVKLLSSESVVAKSSASISLA  676 (844)
Q Consensus       612 ~~~~~---------------~~~~~~~l~e~a~~aL~~l~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~  676 (844)
                      ++...               ......++.+.+..++..++.  ++..+..+.+.|+++.|+++|.++++.++..|+.+|+
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~  485 (529)
T d1jdha_         408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC  485 (529)
T ss_dssp             HHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            54211               111234677888889988885  5666778889999999999999999999999999999


Q ss_pred             HHhhcCccccccccccceecCCCCCCcCcccccccCcccchHhhhcCCchHHHHhhcCCChhhHHHHHHHHHhhh
Q 003146          677 QLSQNSLSLRKSKISKWLCVPPSADAFCEVHDGYCFVKSTFCLVKAGAVSPLIQVLEGKEREADETVLGALASLL  751 (844)
Q Consensus       677 ~ls~~~~~~~~~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~~ai~~Lv~lL~~~~~~v~~~A~~AL~~L~  751 (844)
                      +|+.+...                               ...+.+.|++++|+++++++++.+++.|..||..++
T Consensus       486 ~L~~~~~~-------------------------------~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         486 ELAQDKEA-------------------------------AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHTTSHHH-------------------------------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHhcChhh-------------------------------HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            99865432                               256778999999999999999999999999999873
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure