Citrus Sinensis ID: 003160

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840---

MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMVTK

cccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEccccEEEEEEEEccccccEEEEcccccccccccEEEEcccccccccccccEEEcccccccEEcEEcccccccccccccccccccccccHHHHHHHccccccEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEcccccccHHHHHcccccHHHHHHHHcccccccEEEccccccEEEEcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccccccccHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcHHHHHHHHHHHHHHHHHcccccccEEccccccccccccEEEEEEccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

cccHHHcccccEEEccccccHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcccccHHHHHHHHHHHHHHHcccEEEccEEEEccccccccEccEEEEEEcccccEEEEEEEEcccccEEEEEEcccccccccEEEEEccccHHHHHHcccEEEEEEEcccEEEEEEcccccccccccEEEEcccccccccEEcccccccEEEEEcccccEcccccccccccHHHHHHHHHHHHHHcccEEEEEccEcccccccccccEEEEccccEEEEccHHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEEcccccHccccccccccccccccccccEEcHHHHHHcHHHHcccHHHccHHHHHHHccEcEEEEEHHHHccHHHHHHHHHHHHHccccEcEEEEEccEEccccccccccccccccHHHHHHHccHHHHHHHHHcccccccEEccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccEEEEcccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHcHHHHHHHcccccEEEEccccccHHHHHHHHHHHHcccEEEEEcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcc

mvryhrmkgrptlwlpgtdhagIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLgascdwtrerftLDEQLSRAVVEAFIRLHEKGLiyqgsymvnwspnlQTAVSDLEveyseepgtlYYIKYRVAgrsdfltiattrpetlfgdvalavnpqdehysqFIGMMAIvpmtygrhvpiisdkyvdkefgtgvlkispghdhndYLLARKlglpilnvmnkdgtlnEVAGLFRGLDRFEARKKLWSDLEETglavkkephtlrvprsqrggevieplvskqwfvTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQlwwghripvwyivgkeEEYIVARNADEALEKAHQKYGknveiyqdpdvldtwfssalwpfstlgwpdvsaddfkkfypttmletgHDILFFWVARMVMMGIEftgsvpfshvylhglirdsqgrkmsktlgnvidpidtiKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFilqnlpsqndiSRWEILLAykfdeeeclckaplpecwvvsKLHMLIDTVTAsydkyffgdvgretYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEalivspwpqtslprhmSAIKRFENLQSLTRAIRNARAeysvepakrisasiVANEEVIQYISKEKEVLALLSRLDllnvhftesppgdanqsVHLVASEgleaylpladmVDISAEVQRLSKRLSKMQSEYDGLVARLSsskfvekapEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMVTK

mvryhrmkgrptlwlpgtdhAGIATQLVVEKMLAAegikrvelsrdeftKRVWEwkekyggtitsqikrlgascDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEetglavkkephtlrvprsqrggeviEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIlqnlpsqndiSRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEAlivspwpqtslprhMSAIKRFENLQSLTRAIRNAraeysvepakrisasivaNEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARlssskfvekapeDVVRGVQEKAAeaeekinltknrlaflrstvmvtk

**********PTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAV***************GEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTE*********VHLVASEGLEAYLPLADMVDISAEV*******************************************************LAFL********

MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYR**YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESP*****QSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKM*SEY*****RLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL*S******

MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD*ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMVTK

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSSKFVEKAPEDVxxxxxxxxxxxxxxxxxxxxxxxxxxxxVMVTK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		843	2.2.26 [Sep-21-2011]
Q3AF87		878	Valine--tRNA ligase OS=Ca	yes	no	0.954	0.916	0.471	0.0
Q5N3J4		909	Valine--tRNA ligase OS=Sy	yes	no	0.971	0.900	0.448	0.0
Q5KWL3		880	Valine--tRNA ligase OS=Ge	yes	no	0.956	0.915	0.453	0.0
P11931		880	Valine--tRNA ligase OS=Ge	N/A	no	0.956	0.915	0.454	0.0
Q46IA7		933	Valine--tRNA ligase OS=Pr	yes	no	0.977	0.883	0.453	0.0
Q72ZW8		881	Valine--tRNA ligase OS=Ba	yes	no	0.956	0.914	0.45	0.0
Q817R6		881	Valine--tRNA ligase OS=Ba	yes	no	0.956	0.914	0.447	0.0
Q6HD68		881	Valine--tRNA ligase OS=Ba	yes	no	0.956	0.914	0.448	0.0
Q633Y6		881	Valine--tRNA ligase OS=Ba	yes	no	0.956	0.914	0.448	0.0
Q9X2D7		865	Valine--tRNA ligase OS=Th	yes	no	0.941	0.917	0.456	0.0

>sp\|Q3AF87\|SYV_CARHZ Valine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=valS PE=3 SV=1	Back alignment and function desciption

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/840 (47%), Positives = 551/840 (65%), Gaps = 35/840 (4%)

Query: 1   MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 60
           + RY RM+G  TLWLPGTDHAGIATQ  VE+ L  EG+ + +L R++F +RVW WKE YG
Sbjct: 65  LARYKRMQGFNTLWLPGTDHAGIATQAKVEEELRKEGLTKDDLGREKFLERVWAWKENYG 124

Query: 61  GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 120
             IT Q++ LGASCDW RERFTLDE  S AV E F+RL+EKGLIY+  Y+ NW P+ +T 
Sbjct: 125 NRITEQLRTLGASCDWKRERFTLDEGCSEAVKEVFLRLYEKGLIYRDYYITNWCPHCKTT 184

Query: 121 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 180
           +SD+EVE+ E  G LYYI Y +   S +LT+ATTRPET+ GD A+AV+P+DE Y + IG 
Sbjct: 185 ISDIEVEHLEREGKLYYINYPLEDGSGYLTVATTRPETMLGDTAVAVHPEDERYRELIGK 244

Query: 181 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240
             I+P+   R +P+I+D+YVDKEFGTG +KI+P HD ND+ +  +  LP + V++ D  +
Sbjct: 245 NVILPLV-NRPIPVIADEYVDKEFGTGAVKITPAHDPNDFEVGLRHKLPQVVVLDDDAVM 303

Query: 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVT 300
           NE AG +RGLDR+EARKK+  DL++ GL VK+E  T  V    R   VIEP +SKQWFV 
Sbjct: 304 NENAGKYRGLDRYEARKKIVEDLKDLGLLVKEEEITHSVGHCYRCDTVIEPRLSKQWFVK 363

Query: 301 MEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEE 360
           M+PLAE A+ A   G++  +PERF KIY +WL NI+DWCISRQLWWGHRIPVWY   +  
Sbjct: 364 MKPLAEPAIEAALTGKVKFVPERFTKIYLNWLYNIRDWCISRQLWWGHRIPVWY-CDECG 422

Query: 361 EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY 420
           E I +R   ++  K      ++ +++QDPDVLDTWFSSALWPFSTLGWP  + ++ K +Y
Sbjct: 423 EVIPSREEVKSCPKC-----QSTKVHQDPDVLDTWFSSALWPFSTLGWPQ-NTEELKYYY 476

Query: 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPI 480
           PT++L TG DI+FFWVARM+ MG+EF   VPF  V +HGL+ D+QGRKMSK+LGN +DP+
Sbjct: 477 PTSVLVTGRDIIFFWVARMLFMGLEFMKEVPFKEVLIHGLVLDAQGRKMSKSLGNGVDPV 536

Query: 481 DTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLP--SQND 537
           + I   GAD+LRF +  G T G DL    ERL   + F NKLWNA +F+L NL   +   
Sbjct: 537 EVIASHGADSLRFMLVTGNTPGNDLRFHFERLDGARNFANKLWNASRFVLMNLEGFTPQG 596

Query: 538 ISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFW 597
           I + E+ LA +               W++++L+ +ID VTA  D+Y  G+  RE Y+F W
Sbjct: 597 IKQEELTLADR---------------WILARLNAVIDRVTAFLDEYELGEAARELYEFIW 641

Query: 598 SDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657
            +F DWY+E +K RLY      D   A+ VL  + +  L+LLHPFMPF+TEE+WQ L   
Sbjct: 642 DEFCDWYVELTKPRLYGKMPGGDT--AREVLYAVLKTTLELLHPFMPFITEEIWQRLPHE 699

Query: 658 KEALIVSPWPQTSLP-RHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEE 715
            + ++++PWP+      +  A+K+  +L  + R IR  RAE +V PAKR    +V A+E+
Sbjct: 700 GKTIMLAPWPKGRADYENPEAVKQMSSLMEVIREIRRLRAEVNVPPAKRGEVILVTADEQ 759

Query: 716 VIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAE 775
           + + +++    +A L++ +   V   E P G    ++  VA+ G+  YLPL D++D+  E
Sbjct: 760 LTRLLNENAWAIAALAQSEPRVVPKMEVPQG----ALTGVAA-GVTIYLPLKDLIDLEKE 814

Query: 776 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835
            +RL+K L K+ +E + L  +L++  F+ KAP +VV   +EK      +  + + R+  L
Sbjct: 815 KERLNKELKKVLAEIERLNQKLNNPGFLAKAPAEVVNKEREKLTAFYREKEVLEQRIGML 874

Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 9

>sp\|Q5N3J4\|SYV_SYNP6 Valine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=valS PE=3 SV=1	Back alignment and function description

>sp\|Q5KWL3\|SYV_GEOKA Valine--tRNA ligase OS=Geobacillus kaustophilus (strain HTA426) GN=valS PE=3 SV=1	Back alignment and function description

>sp\|P11931\|SYV_GEOSE Valine--tRNA ligase OS=Geobacillus stearothermophilus GN=valS PE=1 SV=1	Back alignment and function description

>sp\|Q46IA7\|SYV_PROMT Valine--tRNA ligase OS=Prochlorococcus marinus (strain NATL2A) GN=valS PE=3 SV=1	Back alignment and function description

>sp\|Q72ZW8\|SYV_BACC1 Valine--tRNA ligase OS=Bacillus cereus (strain ATCC 10987) GN=valS PE=3 SV=1	Back alignment and function description

>sp\|Q817R6\|SYV_BACCR Valine--tRNA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=valS PE=3 SV=1	Back alignment and function description

>sp\|Q6HD68\|SYV_BACHK Valine--tRNA ligase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=valS PE=3 SV=1	Back alignment and function description

>sp\|Q633Y6\|SYV_BACCZ Valine--tRNA ligase OS=Bacillus cereus (strain ZK / E33L) GN=valS PE=3 SV=1	Back alignment and function description

>sp\|Q9X2D7\|SYV_THEMA Valine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=valS PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		843
224065184		951	predicted protein [Populus trichocarpa]	1.0	0.886	0.866	0.0
359487063		959	PREDICTED: valyl-tRNA synthetase-like [V	0.996	0.875	0.873	0.0
359488299		958	PREDICTED: valyl-tRNA synthetase-like [V	0.996	0.876	0.871	0.0
296085363		963	unnamed protein product [Vitis vinifera]	0.996	0.872	0.867	0.0
356563701		971	PREDICTED: valyl-tRNA synthetase-like [G	1.0	0.868	0.835	0.0
449456259		923	PREDICTED: valine--tRNA ligase-like [Cuc	0.996	0.910	0.841	0.0
334187718		974	valyl-tRNA synthetase [Arabidopsis thali	0.995	0.861	0.839	0.0
218199135		958	hypothetical protein OsI_25003 [Oryza sa	0.995	0.875	0.811	0.0
222636480		960	hypothetical protein OsJ_23192 [Oryza sa	0.995	0.873	0.811	0.0
242043012		977	hypothetical protein SORBIDRAFT_02g00365	0.995	0.858	0.793	0.0

>gi\|224065184\|ref\|XP_002301705.1\| predicted protein [Populus trichocarpa] gi\|222843431\|gb\|EEE80978.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1548 bits (4007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 742/856 (86%), Positives = 804/856 (93%), Gaps = 13/856 (1%)

Query: 1   MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 60
           MVRY+RMKGRPTLWLPGTDHAGIATQLVVEKMLA+EGIKR +LSRDEFTKRVWEWKEKYG
Sbjct: 96  MVRYNRMKGRPTLWLPGTDHAGIATQLVVEKMLASEGIKRTDLSRDEFTKRVWEWKEKYG 155

Query: 61  GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 120
           GTIT+QIKRLGASCDWTRERFTLDEQLS++V+EAFI+LHEKGLIYQGSY+VNWSPNLQTA
Sbjct: 156 GTITNQIKRLGASCDWTRERFTLDEQLSQSVIEAFIKLHEKGLIYQGSYLVNWSPNLQTA 215

Query: 121 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 180
           VSDLEVEYSEEPGTLY+IKYRVAG+SDFLT+ATTRPETLFGDVA+AVNP+D+ YS+FIG 
Sbjct: 216 VSDLEVEYSEEPGTLYHIKYRVAGQSDFLTVATTRPETLFGDVAIAVNPKDDRYSKFIGK 275

Query: 181 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240
           MAIVPMTYGRHVPII+D++VDK+FGTGVLKISPGHDHNDY LARKLGLPILNVMNKDGTL
Sbjct: 276 MAIVPMTYGRHVPIIADRHVDKDFGTGVLKISPGHDHNDYYLARKLGLPILNVMNKDGTL 335

Query: 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVT 300
           NEVAGL+ GLDRFEARKKLWS+LEETGLA+KKEPHTLRVPRSQRGGE+IEPLVSKQWFVT
Sbjct: 336 NEVAGLYCGLDRFEARKKLWSELEETGLAIKKEPHTLRVPRSQRGGEIIEPLVSKQWFVT 395

Query: 301 MEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK-- 358
           MEPLAEKAL AVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK  
Sbjct: 396 MEPLAEKALRAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKNC 455

Query: 359 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 418
           EE+YIVARNADEALEKA +KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA+DFKK
Sbjct: 456 EEDYIVARNADEALEKAREKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKK 515

Query: 419 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 478
           FYPTTMLETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKTLGNVID
Sbjct: 516 FYPTTMLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVID 575

Query: 479 PIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI 538
           P+DTIKEFG DALRFTISLGTAGQDL+LS ERLTANKAFTNKLWNAGKF+LQN+PSQ D+
Sbjct: 576 PLDTIKEFGTDALRFTISLGTAGQDLNLSTERLTANKAFTNKLWNAGKFVLQNMPSQTDV 635

Query: 539 SRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWS 598
           S WE +   KFD+EE + + PLPECWVVS+LH+LID VTASYDK+FFGDVGRE YDFFWS
Sbjct: 636 SAWEAIRNCKFDKEESVLRLPLPECWVVSELHVLIDMVTASYDKFFFGDVGREIYDFFWS 695

Query: 599 DFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRK 658
           DFADWYIEASKARLY+S  +S    AQAVLLY+F+N+LKLLHPFMPFVTEELWQ+L   K
Sbjct: 696 DFADWYIEASKARLYQSGANSACSEAQAVLLYVFKNVLKLLHPFMPFVTEELWQALPDPK 755

Query: 659 EALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQ 718
           EALIVSPWPQTSLPR  ++IK+FEN Q+LTRAIRNARAEYSVEPAKRISASIVA+EEVIQ
Sbjct: 756 EALIVSPWPQTSLPRFPNSIKKFENFQALTRAIRNARAEYSVEPAKRISASIVASEEVIQ 815

Query: 719 YISKEKEVLALLSRLDLLNVHFTESPPG-----------DANQSVHLVASEGLEAYLPLA 767
           YIS EKEVLALLSRLDL N+HFT+SPPG           DANQSVHLVASEGLEAYLPLA
Sbjct: 816 YISNEKEVLALLSRLDLQNIHFTDSPPGMFISQSIFLVWDANQSVHLVASEGLEAYLPLA 875

Query: 768 DMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINL 827
           DMV+ISAEV+RLSKRLSKMQ EYDGL ARLSS KFVEKAPEDVVRGV+EKAAEAEEKI L
Sbjct: 876 DMVNISAEVERLSKRLSKMQVEYDGLAARLSSRKFVEKAPEDVVRGVREKAAEAEEKIKL 935

Query: 828 TKNRLAFLRSTVMVTK 843
           TKNRLAFL+S+ +V++
Sbjct: 936 TKNRLAFLKSSSLVSQ 951

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359487063\|ref\|XP_002270806.2\| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359488299\|ref\|XP_003633739.1\| PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296085363\|emb\|CBI29095.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356563701\|ref\|XP_003550098.1\| PREDICTED: valyl-tRNA synthetase-like [Glycine max]	Back alignment and taxonomy information

>gi\|449456259\|ref\|XP_004145867.1\| PREDICTED: valine--tRNA ligase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|334187718\|ref\|NP_568337.4\| valyl-tRNA synthetase [Arabidopsis thaliana] gi\|332004946\|gb\|AED92329.1\| valyl-tRNA synthetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|218199135\|gb\|EEC81562.1\| hypothetical protein OsI_25003 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|222636480\|gb\|EEE66612.1\| hypothetical protein OsJ_23192 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|242043012\|ref\|XP_002459377.1\| hypothetical protein SORBIDRAFT_02g003650 [Sorghum bicolor] gi\|241922754\|gb\|EER95898.1\| hypothetical protein SORBIDRAFT_02g003650 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		843
TIGR_CMR\|CBU_0808		920	CBU_0808 "valyl-tRNA synthetas	0.614	0.563	0.560	5.5e-204
TIGR_CMR\|BA_4690		881	BA_4690 "valyl-tRNA synthetase	0.956	0.914	0.448	8.7e-198
UNIPROTKB\|Q9KP73		953	valS "Valine--tRNA ligase" [Vi	0.291	0.258	0.480	6.4e-174
TIGR_CMR\|VC_2503		953	VC_2503 "valyl-tRNA synthetase	0.291	0.258	0.480	6.4e-174
UNIPROTKB\|P07118		951	valS "valyl-tRNA synthetase" [	0.291	0.258	0.507	3.1e-173
UNIPROTKB\|P67599		876	valS "Valine--tRNA ligase" [My	0.717	0.690	0.435	1.5e-166
TIGR_CMR\|CJE_0866		870	CJE_0866 "valyl-tRNA synthetas	0.695	0.673	0.447	6.5e-164
TIGR_CMR\|CHY_0334		878	CHY_0334 "valyl-tRNA synthetas	0.638	0.612	0.544	4.5e-162
FB\|FBgn0027079		1049	Aats-val "Valyl-tRNA synthetas	0.580	0.466	0.478	5.2e-162
CGD\|CAL0003105		1119	VAS1 [Candida albicans (taxid:	0.431	0.325	0.465	1.2e-159

TIGR_CMR\|CBU_0808 CBU_0808 "valyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

 Score = 1556 (552.8 bits), Expect = 5.5e-204, Sum P(2) = 5.5e-204
 Identities = 295/526 (56%), Positives = 382/526 (72%)

Query:     1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 60
             ++RYHRMKG  TLW  GTDHAGIATQ+VVE+ LA E + R +L R  F KRVWEW+E+ G
Sbjct:    60 LIRYHRMKGERTLWQGGTDHAGIATQMVVEQQLAQEDLTREDLGRQAFIKRVWEWRERSG 119

Query:    61 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 120
             G IT Q++RLG S DW+RERF++DE LSRA  EAFIRLH +GLIY+G  +VNW P L TA
Sbjct:   120 GKITHQMRRLGVSIDWSRERFSMDEGLSRATTEAFIRLHHEGLIYRGKRLVNWDPKLNTA 179

Query:   121 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 180
             +SDLEV   E  G L++I+Y +A  S  L IATTRPETL GDVA+AV+PQDE Y  F+G 
Sbjct:   180 ISDLEVVTEEVEGHLWHIRYPLAEGSGHLIIATTRPETLLGDVAIAVHPQDERYQPFVGK 239

Query:   181 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240
                +P+T  R +P+I+D+ VDKEFGTG LKI+PGHD NDY + ++  LP++N++  +G L
Sbjct:   240 KVRLPLT-DRTIPVIADEAVDKEFGTGSLKITPGHDFNDYEIGQRHQLPLINILTSEGYL 298

Query:   241 NE-VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFV 299
             NE V   +RGL+RFEARKK+ +DL+   L  K EP+ + VPR +R G +IEPL++ QWF+
Sbjct:   299 NENVPEPYRGLERFEARKKIIADLQRENLLEKTEPYRVPVPRGERSGVIIEPLLTDQWFI 358

Query:   300 TMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKE 359
              ME LA+ A+ AVE GEL  +P+ +EK Y  WLSNI+DWCISRQLWWGHR+PVWY   +E
Sbjct:   359 KMEALAKPAMEAVESGELKFIPKNWEKTYLQWLSNIQDWCISRQLWWGHRLPVWY--DEE 416

Query:   360 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 419
             +   V R+ +E L+K H     +V++ Q+ DVLDTWFS++LWPF+TLGWP+   + FK F
Sbjct:   417 KNSYVGRSREEILKKYH--LSPDVKLQQETDVLDTWFSASLWPFATLGWPE-KTESFKTF 473

Query:   420 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 479
             YPT +L TG DI+FFWVARMVMMG++ T  +PF  VY+HGLIRDSQGRKMSK+ GNVIDP
Sbjct:   474 YPTQVLVTGFDIIFFWVARMVMMGLKLTHKIPFHSVYIHGLIRDSQGRKMSKSKGNVIDP 533

Query:   480 IDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAG 525
             ID I     DAL    +       ++ +IE++T  K F N + + G
Sbjct:   534 IDIIDGISLDALIEKRTHALLQPKMAKTIEKMT-RKEFPNGIASFG 578

GO:0004832 "valine-tRNA ligase activity" evidence=ISS

GO:0006438 "valyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR\|BA_4690 BA_4690 "valyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KP73 valS "Valine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2503 VC_2503 "valyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

UNIPROTKB\|P07118 valS "valyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|P67599 valS "Valine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

TIGR_CMR\|CJE_0866 CJE_0866 "valyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0334 CHY_0334 "valyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

FB\|FBgn0027079 Aats-val "Valyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

CGD\|CAL0003105 VAS1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99TJ8	SYV_STAAN	6, ., 1, ., 1, ., 9	0.4256	0.9596	0.9235	yes	no
Q3A253	SYV_PELCD	6, ., 1, ., 1, ., 9	0.4439	0.9466	0.8876	yes	no
Q9K8G8	SYV_BACHD	6, ., 1, ., 1, ., 9	0.4447	0.9584	0.9181	yes	no
Q82ZW6	SYV_ENTFA	6, ., 1, ., 1, ., 9	0.4363	0.9584	0.9181	yes	no
Q38XD1	SYV_LACSS	6, ., 1, ., 1, ., 9	0.4275	0.9584	0.9160	yes	no
Q05873	SYV_BACSU	6, ., 1, ., 1, ., 9	0.4394	0.9572	0.9170	yes	no
Q7A0P4	SYV_STAAW	6, ., 1, ., 1, ., 9	0.4256	0.9596	0.9235	yes	no
Q5N3J4	SYV_SYNP6	6, ., 1, ., 1, ., 9	0.4481	0.9715	0.9009	yes	no
Q5FKW5	SYV_LACAC	6, ., 1, ., 1, ., 9	0.4353	0.9596	0.9203	yes	no
Q46IA7	SYV_PROMT	6, ., 1, ., 1, ., 9	0.4532	0.9774	0.8831	yes	no
Q6MQK8	SYV_BDEBA	6, ., 1, ., 1, ., 9	0.4325	0.9584	0.9038	yes	no
Q8RBN5	SYV_THETN	6, ., 1, ., 1, ., 9	0.4441	0.9608	0.9215	yes	no
Q72ZW8	SYV_BACC1	6, ., 1, ., 1, ., 9	0.45	0.9561	0.9148	yes	no
Q8RHK3	SYV_FUSNN	6, ., 1, ., 1, ., 9	0.4408	0.9644	0.9165	yes	no
Q7UZI3	SYV_PROMP	6, ., 1, ., 1, ., 9	0.4339	0.9655	0.8867	yes	no
Q817R6	SYV_BACCR	6, ., 1, ., 1, ., 9	0.4476	0.9561	0.9148	yes	no
Q8XJ42	SYV_CLOPE	6, ., 1, ., 1, ., 9	0.4427	0.9632	0.9227	yes	no
Q9X2D7	SYV_THEMA	6, ., 1, ., 1, ., 9	0.4561	0.9418	0.9179	yes	no
Q6HD68	SYV_BACHK	6, ., 1, ., 1, ., 9	0.4488	0.9561	0.9148	yes	no
Q5HFA8	SYV_STAAC	6, ., 1, ., 1, ., 9	0.4256	0.9596	0.9235	yes	no
Q7V9I9	SYV_PROMA	6, ., 1, ., 1, ., 9	0.4405	0.9786	0.8842	yes	no
Q74JZ8	SYV_LACJO	6, ., 1, ., 1, ., 9	0.4330	0.9489	0.9101	yes	no
Q7U3N4	SYV_SYNPX	6, ., 1, ., 1, ., 9	0.4461	0.9739	0.8982	yes	no
Q3Z9C5	SYV_DEHE1	6, ., 1, ., 1, ., 9	0.4389	0.9418	0.9022	yes	no
A8Z2I4	SYV_STAAT	6, ., 1, ., 1, ., 9	0.4256	0.9596	0.9235	yes	no
Q67SJ2	SYV_SYMTH	6, ., 1, ., 1, ., 9	0.4401	0.9632	0.8913	yes	no
Q92BG2	SYV_LISIN	6, ., 1, ., 1, ., 9	0.4389	0.9454	0.9036	yes	no
Q3ZZG9	SYV_DEHSC	6, ., 1, ., 1, ., 9	0.4299	0.9454	0.9056	yes	no
Q3AF87	SYV_CARHZ	6, ., 1, ., 1, ., 9	0.4714	0.9549	0.9168	yes	no
Q891R5	SYV_CLOTE	6, ., 1, ., 1, ., 9	0.4178	0.9596	0.9193	yes	no
Q8EPN2	SYV_OCEIH	6, ., 1, ., 1, ., 9	0.4304	0.9572	0.9139	yes	no
A5ITI8	SYV_STAA9	6, ., 1, ., 1, ., 9	0.4256	0.9596	0.9235	yes	no
A7HJX5	SYV_FERNB	6, ., 1, ., 1, ., 9	0.4437	0.9371	0.9111	yes	no
Q81LD3	SYV_BACAN	6, ., 1, ., 1, ., 9	0.4476	0.9561	0.9148	yes	no
Q7TUI9	SYV_PROMM	6, ., 1, ., 1, ., 9	0.4448	0.9667	0.8772	yes	no
Q8DIS8	SYV_THEEB	6, ., 1, ., 1, ., 9	0.4516	0.9347	0.8630	yes	no
Q97GG8	SYV_CLOAB	6, ., 1, ., 1, ., 9	0.4513	0.9584	0.9171	yes	no
Q73MZ2	SYV_TREDE	6, ., 1, ., 1, ., 9	0.4454	0.9632	0.8932	yes	no
A8F8Q3	SYV_THELT	6, ., 1, ., 1, ., 9	0.4360	0.9454	0.9256	yes	no
Q65GK8	SYV_BACLD	6, ., 1, ., 1, ., 9	0.4387	0.9584	0.9181	yes	no
B7GH39	SYV_ANOFW	6, ., 1, ., 1, ., 9	0.4435	0.9584	0.9234	yes	no
A9BIJ7	SYV_PETMO	6, ., 1, ., 1, ., 9	0.4525	0.9371	0.9038	yes	no
Q633Y6	SYV_BACCZ	6, ., 1, ., 1, ., 9	0.4488	0.9561	0.9148	yes	no
A6QHJ8	SYV_STAAE	6, ., 1, ., 1, ., 9	0.4256	0.9596	0.9235	yes	no
Q5KWL3	SYV_GEOKA	6, ., 1, ., 1, ., 9	0.4530	0.9561	0.9159	yes	no
Q6G8R2	SYV_STAAS	6, ., 1, ., 1, ., 9	0.4256	0.9596	0.9235	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.9	0.914
3rd Layer	6.1.1	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		843
PLN02943		958	PLN02943, PLN02943, aminoacyl-tRNA ligase	0.0
PRK05729		874	PRK05729, valS, valyl-tRNA synthetase; Reviewed	0.0
COG0525		877	COG0525, ValS, Valyl-tRNA synthetase [Translation,	0.0
TIGR00422		861	TIGR00422, valS, valyl-tRNA synthetase	0.0
PTZ00419		995	PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro	0.0
PRK14900		1052	PRK14900, valS, valyl-tRNA synthetase; Provisional	0.0
PLN02381		1066	PLN02381, PLN02381, valyl-tRNA synthetase	0.0
pfam00133		606	pfam00133, tRNA-synt_1, tRNA synthetases class I (	0.0
PRK13208		800	PRK13208, valS, valyl-tRNA synthetase; Reviewed	1e-174
cd00817		382	cd00817, ValRS_core, catalytic core domain of valy	1e-115
COG0060		933	COG0060, IleS, Isoleucyl-tRNA synthetase [Translat	1e-109
TIGR00392		861	TIGR00392, ileS, isoleucyl-tRNA synthetase	1e-104
PRK06039		975	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe	1e-91
PRK05743		912	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe	3e-73
cd00817		382	cd00817, ValRS_core, catalytic core domain of valy	2e-65
PRK13804		961	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi	3e-65
cd07962		135	cd07962, Anticodon_Ia_Val, Anticodon-binding domai	5e-51
cd00668		312	cd00668, Ile_Leu_Val_MetRS_core, catalytic core do	2e-47
PLN02843		974	PLN02843, PLN02843, isoleucyl-tRNA synthetase	2e-45
TIGR00395		938	TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch	5e-42
COG0495		814	COG0495, LeuS, Leucyl-tRNA synthetase [Translation	1e-40
pfam08264		148	pfam08264, Anticodon_1, Anticodon-binding domain o	2e-38
cd00818		338	cd00818, IleRS_core, catalytic core domain of isol	1e-36
PTZ00427		1205	PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati	6e-35
PLN02882		1159	PLN02882, PLN02882, aminoacyl-tRNA ligase	4e-34
TIGR00396		842	TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba	1e-33
PRK12300		897	PRK12300, leuS, leucyl-tRNA synthetase; Reviewed	3e-29
cd00668		312	cd00668, Ile_Leu_Val_MetRS_core, catalytic core do	1e-23
PRK00390		805	PRK00390, leuS, leucyl-tRNA synthetase; Validated	1e-19
COG0143		558	COG0143, MetG, Methionyl-tRNA synthetase [Translat	5e-18
cd07961		183	cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding	7e-17
pfam09334		388	pfam09334, tRNA-synt_1g, tRNA synthetases class I	1e-16
cd07960		180	cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding d	1e-15
PRK11893		511	PRK11893, PRK11893, methionyl-tRNA synthetase; Rev	1e-14
PRK12300		897	PRK12300, leuS, leucyl-tRNA synthetase; Reviewed	2e-14
cd00814		319	cd00814, MetRS_core, catalytic core domain of meth	5e-14
PRK00390		805	PRK00390, leuS, leucyl-tRNA synthetase; Validated	6e-14
PRK12267		648	PRK12267, PRK12267, methionyl-tRNA synthetase; Rev	8e-14
PLN02843		974	PLN02843, PLN02843, isoleucyl-tRNA synthetase	1e-13
cd00812		314	cd00812, LeuRS_core, catalytic core domain of leuc	1e-13
TIGR00398		530	TIGR00398, metG, methionyl-tRNA synthetase	3e-13
pfam13603		178	pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase,	3e-13
pfam10458		66	pfam10458, Val_tRNA-synt_C, Valyl tRNA synthetase	3e-13
PLN02563		963	PLN02563, PLN02563, aminoacyl-tRNA ligase	3e-12
cd00818		338	cd00818, IleRS_core, catalytic core domain of isol	1e-09
cd00812		314	cd00812, LeuRS_core, catalytic core domain of leuc	3e-09
cd07959		117	cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding d	1e-08
PLN02959		1084	PLN02959, PLN02959, aminoacyl-tRNA ligase	1e-08
PRK00133		673	PRK00133, metG, methionyl-tRNA synthetase; Reviewe	2e-08
PRK12268		556	PRK12268, PRK12268, methionyl-tRNA synthetase; Rev	3e-07
cd07958		117	cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding d	1e-05
PLN02224		616	PLN02224, PLN02224, methionine-tRNA ligase	2e-05
pfam09334		388	pfam09334, tRNA-synt_1g, tRNA synthetases class I	3e-05
COG0215		464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	4e-05
cd07375		117	cd07375, Anticodon_Ia_like, Anticodon-binding doma	6e-05
COG0143		558	COG0143, MetG, Methionyl-tRNA synthetase [Translat	7e-05
cd00814		319	cd00814, MetRS_core, catalytic core domain of meth	7e-05
PLN02882		1159	PLN02882, PLN02882, aminoacyl-tRNA ligase	1e-04
PLN02563		963	PLN02563, PLN02563, aminoacyl-tRNA ligase	8e-04
PRK11893		511	PRK11893, PRK11893, methionyl-tRNA synthetase; Rev	0.001
PRK12267		648	PRK12267, PRK12267, methionyl-tRNA synthetase; Rev	0.001
TIGR00398		530	TIGR00398, metG, methionyl-tRNA synthetase	0.002
PRK12268		556	PRK12268, PRK12268, methionyl-tRNA synthetase; Rev	0.002
cd00672		213	cd00672, CysRS_core, catalytic core domain of cyst	0.004

>gnl\|CDD\|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase	Back alignment and domain information

 Score = 1676 bits (4341), Expect = 0.0
 Identities = 745/846 (88%), Positives = 798/846 (94%), Gaps = 7/846 (0%)

Query: 1   MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 60
           MVRY+RMKGRPTLW+PGTDHAGIATQLVVEKMLA+EGIKR +L RDEFTKRVWEWKEKYG
Sbjct: 117 MVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYG 176

Query: 61  GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 120
           GTIT+QIKRLGASCDW+RERFTLDEQLSRAVVEAF+RLHEKGLIYQGSYMVNWSPNLQTA
Sbjct: 177 GTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTA 236

Query: 121 VSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 179
           VSDLEVEYSEEPGTLYYIKYRVAG S DFLTIATTRPETLFGDVA+AVNP+D+ YS++IG
Sbjct: 237 VSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIG 296

Query: 180 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239
            MAIVPMTYGRHVPII+D+YVDK+FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT
Sbjct: 297 KMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 356

Query: 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFV 299
           LNEVAGL+     FEAR+KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFV
Sbjct: 357 LNEVAGLYW----FEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFV 412

Query: 300 TMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK- 358
           TMEPLAEKAL AVE GELTI+PERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 
Sbjct: 413 TMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKD 472

Query: 359 -EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFK 417
            EE+YIVAR+A+EALEKA +KYGK+VEIYQDPDVLDTWFSSALWPFSTLGWPDVSA+DFK
Sbjct: 473 CEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFK 532

Query: 418 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 477
           KFYPTT+LETGHDILFFWVARMVMMGIEFTG+VPFS+VYLHGLIRDSQGRKMSKTLGNVI
Sbjct: 533 KFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVI 592

Query: 478 DPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQND 537
           DP+DTIKEFG DALRFT++LGTAGQDL+LS ERLT+NKAFTNKLWNAGKF+LQNLPSQ+D
Sbjct: 593 DPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSD 652

Query: 538 ISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFW 597
            S WE +LA KFD+EE L   PLPECWVVSKLH LID+VT SYDKYFFGDVGRE YDFFW
Sbjct: 653 TSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFW 712

Query: 598 SDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657
           SDFADWYIEASK RLY S  +S    AQAVLLY+FENILKLLHPFMPFVTEELWQ+L  R
Sbjct: 713 SDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR 772

Query: 658 KEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVI 717
           KEALIVSPWPQTSLP+ + +IKRFENLQSLTRAIRNARAEYSVEPAKRISASIVA+ EVI
Sbjct: 773 KEALIVSPWPQTSLPKDLKSIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVASAEVI 832

Query: 718 QYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQ 777
           +YISKEKEVLALLSRLDL NVHFT+SPPGDANQSVHLVASEGLEAYLPLADMVDISAEV+
Sbjct: 833 EYISKEKEVLALLSRLDLQNVHFTDSPPGDANQSVHLVASEGLEAYLPLADMVDISAEVE 892

Query: 778 RLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837
           RLSKRLSKMQ+EYD L ARLSS KFVEKAPEDVVRGV+EKAAEAEEKI LTKNRLAFL+S
Sbjct: 893 RLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKS 952

Query: 838 TVMVTK 843
           T +V++
Sbjct: 953 TSLVSQ 958

Length = 958

>gnl\|CDD\|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|232969 TIGR00422, valS, valyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|215214 PLN02381, PLN02381, valyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V)	Back alignment and domain information

>gnl\|CDD\|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family	Back alignment and domain information

>gnl\|CDD\|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA	Back alignment and domain information

>gnl\|CDD\|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional	Back alignment and domain information

>gnl\|CDD\|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family	Back alignment and domain information

>gnl\|CDD\|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M)	Back alignment and domain information

>gnl\|CDD\|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|232957 TIGR00398, metG, methionyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2	Back alignment and domain information

>gnl\|CDD\|151031 pfam10458, Val_tRNA-synt_C, Valyl tRNA synthetase tRNA binding arm	Back alignment and domain information

>gnl\|CDD\|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|177869 PLN02224, PLN02224, methionine-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M)	Back alignment and domain information

>gnl\|CDD\|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains	Back alignment and domain information

>gnl\|CDD\|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|232957 TIGR00398, metG, methionyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		843
COG0525		877	ValS Valyl-tRNA synthetase [Translation, ribosomal	100.0
KOG0432		995	consensus Valyl-tRNA synthetase [Translation, ribo	100.0
PLN02943		958	aminoacyl-tRNA ligase	100.0
PLN02381		1066	valyl-tRNA synthetase	100.0
PTZ00419		995	valyl-tRNA synthetase-like protein; Provisional	100.0
PRK05729		874	valS valyl-tRNA synthetase; Reviewed	100.0
TIGR00422		861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	100.0
PRK14900		1052	valS valyl-tRNA synthetase; Provisional	100.0
PRK06039		975	ileS isoleucyl-tRNA synthetase; Reviewed	100.0
PTZ00427		1205	isoleucine-tRNA ligase, putative; Provisional	100.0
PLN02882		1159	aminoacyl-tRNA ligase	100.0
COG0060		933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	100.0
PRK05743		912	ileS isoleucyl-tRNA synthetase; Reviewed	100.0
PRK13804		961	ileS isoleucyl-tRNA synthetase; Provisional	100.0
PLN02843		974	isoleucyl-tRNA synthetase	100.0
PRK13208		800	valS valyl-tRNA synthetase; Reviewed	100.0
TIGR00392		861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	100.0
PRK12300		897	leuS leucyl-tRNA synthetase; Reviewed	100.0
PLN02959		1084	aminoacyl-tRNA ligase	100.0
TIGR00395		938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	100.0
KOG0433		937	consensus Isoleucyl-tRNA synthetase [Translation,	100.0
PF00133		601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	100.0
KOG0434		1070	consensus Isoleucyl-tRNA synthetase [Translation,	100.0
PRK00390		805	leuS leucyl-tRNA synthetase; Validated	100.0
TIGR00396		842	leuS_bact leucyl-tRNA synthetase, eubacterial and	100.0
PLN02563		963	aminoacyl-tRNA ligase	100.0
COG0495		814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	100.0
KOG0435		876	consensus Leucyl-tRNA synthetase [Translation, rib	100.0
PRK12268		556	methionyl-tRNA synthetase; Reviewed	100.0
TIGR00398		530	metG methionyl-tRNA synthetase. The methionyl-tRNA	100.0
cd00817		382	ValRS_core catalytic core domain of valyl-tRNA syn	100.0
PLN02610		801	probable methionyl-tRNA synthetase	100.0
PRK00133		673	metG methionyl-tRNA synthetase; Reviewed	100.0
KOG0437		1080	consensus Leucyl-tRNA synthetase [Translation, rib	100.0
PRK12267		648	methionyl-tRNA synthetase; Reviewed	100.0
COG0143		558	MetG Methionyl-tRNA synthetase [Translation, ribos	100.0
PRK11893		511	methionyl-tRNA synthetase; Reviewed	100.0
PLN02224		616	methionine-tRNA ligase	100.0
cd00818		338	IleRS_core catalytic core domain of isoleucyl-tRNA	100.0
KOG0436		578	consensus Methionyl-tRNA synthetase [Translation,	100.0
cd00668		312	Ile_Leu_Val_MetRS_core catalytic core domain of is	100.0
PF09334		391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	100.0
cd00814		319	MetRS_core catalytic core domain of methioninyl-tR	100.0
KOG1247		567	consensus Methionyl-tRNA synthetase [Translation,	100.0
cd00812		314	LeuRS_core catalytic core domain of leucyl-tRNA sy	100.0
PRK00260		463	cysS cysteinyl-tRNA synthetase; Validated	100.0
PTZ00399		651	cysteinyl-tRNA-synthetase; Provisional	99.97
TIGR00435		465	cysS cysteinyl-tRNA synthetase. This model finds t	99.96
PRK12418		384	cysteinyl-tRNA synthetase; Provisional	99.95
PRK14536		490	cysS cysteinyl-tRNA synthetase; Provisional	99.94
TIGR03447		411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	99.94
cd07961		183	Anticodon_Ia_Ile_ABEc Anticodon-binding domain of	99.94
PLN02946		557	cysteine-tRNA ligase	99.93
cd07960		180	Anticodon_Ia_Ile_BEm Anticodon-binding domain of b	99.93
PRK14534		481	cysS cysteinyl-tRNA synthetase; Provisional	99.92
PRK14535		699	cysS cysteinyl-tRNA synthetase; Provisional	99.92
PF13603		185	tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; P	99.91
PF08264		153	Anticodon_1: Anticodon-binding domain of tRNA; Int	99.9
cd00672		213	CysRS_core catalytic core domain of cysteinyl tRNA	99.89
PRK01611		507	argS arginyl-tRNA synthetase; Reviewed	99.86
cd00674		353	LysRS_core_class_I catalytic core domain of class	99.84
COG0215		464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	99.77
cd07962		135	Anticodon_Ia_Val Anticodon-binding domain of valyl	99.71
PRK00750		510	lysK lysyl-tRNA synthetase; Reviewed	99.69
cd07959		117	Anticodon_Ia_Leu_AEc Anticodon-binding domain of a	99.65
PF01406		300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	99.64
cd07957		129	Anticodon_Ia_Met Anticodon-binding domain of methi	99.6
cd07958		117	Anticodon_Ia_Leu_BEm Anticodon-binding domain of b	99.58
KOG2007		586	consensus Cysteinyl-tRNA synthetase [Translation,	99.56
PF10458		66	Val_tRNA-synt_C: Valyl tRNA synthetase tRNA bindin	99.52
TIGR00456		566	argS arginyl-tRNA synthetase. This model recognize	99.44
TIGR00467		515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	99.33
cd07375		117	Anticodon_Ia_like Anticodon-binding domain of clas	99.27
PRK12451		562	arginyl-tRNA synthetase; Reviewed	98.84
PLN02286		576	arginine-tRNA ligase	98.75
COG0018		577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	98.72
cd00671		212	ArgRS_core catalytic core domain of arginyl-tRNA s	98.54
PF01921		360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	97.96
PF00750		354	tRNA-synt_1d: tRNA synthetases class I (R); InterP	97.3
COG1384		521	LysS Lysyl-tRNA synthetase (class I) [Translation,	97.19
PLN02563		963	aminoacyl-tRNA ligase	96.35
PRK13354		410	tyrosyl-tRNA synthetase; Provisional	95.82
COG0495		814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	95.76
TIGR00396		842	leuS_bact leucyl-tRNA synthetase, eubacterial and	95.75
cd00395		273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	95.72
cd07956		156	Anticodon_Ia_Arg Anticodon-binding domain of argin	95.48
cd00805		269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	95.38
cd00418		230	GlxRS_core catalytic core domain of glutamyl-tRNA	95.2
cd00802		143	class_I_aaRS_core catalytic core domain of class I	94.89
cd00802		143	class_I_aaRS_core catalytic core domain of class I	94.84
PRK05912		408	tyrosyl-tRNA synthetase; Validated	94.81
PRK00390		805	leuS leucyl-tRNA synthetase; Validated	94.7
TIGR00464		470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	94.57
PF00579		292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	94.46
PRK12556		332	tryptophanyl-tRNA synthetase; Provisional	94.14
PRK14900		1052	valS valyl-tRNA synthetase; Provisional	93.95
KOG0435		876	consensus Leucyl-tRNA synthetase [Translation, rib	93.68
PRK12284		431	tryptophanyl-tRNA synthetase; Reviewed	93.62
PRK04156		567	gltX glutamyl-tRNA synthetase; Provisional	93.26
PRK08560		329	tyrosyl-tRNA synthetase; Validated	93.06
TIGR00233		328	trpS tryptophanyl-tRNA synthetase. This model repr	92.52
cd00808		239	GluRS_core catalytic core domain of discriminating	91.77
PRK01406		476	gltX glutamyl-tRNA synthetase; Reviewed	91.58
COG0162		401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	91.17
COG0180		314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	90.95
PTZ00126		383	tyrosyl-tRNA synthetase; Provisional	90.67
PRK12285		368	tryptophanyl-tRNA synthetase; Reviewed	90.35
cd00806		280	TrpRS_core catalytic core domain of tryptophanyl-t	90.23
PRK12282		333	tryptophanyl-tRNA synthetase II; Reviewed	90.16
PF15188		85	CCDC-167: Coiled-coil domain-containing protein 16	89.86
TIGR00234		377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	89.7
PRK00927		333	tryptophanyl-tRNA synthetase; Reviewed	87.68
cd00807		238	GlnRS_core catalytic core domain of glutaminyl-tRN	86.74
PF02388		406	FemAB: FemAB family; InterPro: IPR003447 The femAB	85.48
PRK12283		398	tryptophanyl-tRNA synthetase; Reviewed	84.84
cd00671		212	ArgRS_core catalytic core domain of arginyl-tRNA s	82.21
PRK14895		513	gltX glutamyl-tRNA synthetase; Provisional	82.08
PRK12410		433	glutamylglutaminyl-tRNA synthetase; Provisional	81.7

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=8.5e-214  Score=1819.98  Aligned_cols=812  Identities=51%  Similarity=0.918  Sum_probs=755.5

Q ss_pred             CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160            1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER   80 (843)
Q Consensus         1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~   80 (843)
                      ++||+||+||+|+|+|||||||||||++|||++.++|++++++|||+|+++||+|++++++.|++||++||+|+||+|+|
T Consensus        62 l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~  141 (877)
T COG0525          62 LARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRER  141 (877)
T ss_pred             HHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence            58999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160           81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF  160 (843)
Q Consensus        81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~  160 (843)
                      |||||+++++|+.+|++||++|||||++++|||||+|+|||||.||+|++..|.++||+|++++++.+|+|||||||||+
T Consensus       142 fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtml  221 (877)
T COG0525         142 FTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLL  221 (877)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160          161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL  240 (843)
Q Consensus       161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~  240 (843)
                      |||||||||+|+||++|+|+.+.+|+. |+.||||+|+|||++||||+||||||||+|||++++||+||+++++|++|++
T Consensus       222 gdtAVaVhP~DeRYk~LvGk~v~lPl~-~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~i  300 (877)
T COG0525         222 GDTAVAVHPDDERYKHLVGKEVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRI  300 (877)
T ss_pred             cceEEEECCCChhhHhhcCCEEecCCC-CCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCee
Confidence            999999999999999999999999995 8999999999999999999999999999999999999999999999999999


Q ss_pred             cccCC-CCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160          241 NEVAG-LFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI  319 (843)
Q Consensus       241 ~~~~g-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~  319 (843)
                      +++++ +|+||++++||++|++.|++.|+|++.+++.|++|||+|||+||||++++|||+++..+++.+++++++|+++|
T Consensus       301 n~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f  380 (877)
T COG0525         301 NEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF  380 (877)
T ss_pred             ccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceE
Confidence            98875 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEecC
Q 003160          320 MPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSA  399 (843)
Q Consensus       320 ~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS~  399 (843)
                      +|++++++|.+|+++++|||||||+|||||||+|||.+ ++..+++.+..+....  ...+....++||+|||||||||+
T Consensus       381 ~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~-~g~v~v~~~~~~~~~~--~~~~~~~~~~qd~DVLDTWFSS~  457 (877)
T COG0525         381 VPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKE-CGNVVVAEEEPEDPAA--AEKCPKEELEQDEDVLDTWFSSS  457 (877)
T ss_pred             ecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecC-CCcEEeCCccccchhh--hccCchhcccCCcchhhhhhhcc
Confidence            99999999999999999999999999999999999963 6777777764433222  11122256889999999999999


Q ss_pred             cccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccCh
Q 003160          400 LWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP  479 (843)
Q Consensus       400 l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p  479 (843)
                      +|||+++|||+++ .+|++|||+|++++|+||||||++||+|+|+.++|+.||++|++||+|+|++|+|||||+||||||
T Consensus       458 LwPfstlgWp~~t-~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP  536 (877)
T COG0525         458 LWPFSTLGWPEET-PDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDP  536 (877)
T ss_pred             cccccccCCCCcc-hHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCH
Confidence            9999999999996 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCC
Q 003160          480 IDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKA  558 (843)
Q Consensus       480 ~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (843)
                      .++|++||||||||||++.+. |+|++|+++.++++++|+||+||+.||+++++.+....+             ......
T Consensus       537 ~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~-------------~~~~~~  603 (877)
T COG0525         537 LDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDD-------------LDLLAL  603 (877)
T ss_pred             HHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCccc-------------cccccc
Confidence            999999999999999999877 999999999999999999999999999999875544300             000123


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 003160          559 PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKL  638 (843)
Q Consensus       559 ~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~L  638 (843)
                      +.+|+||+++|+++++.++++|++|+|..|.+++|+|+|++|||||||++|++++++  ++.+.+++.+|+++|+.+++|
T Consensus       604 ~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~--~~~~~~a~~tL~~vl~~~lrL  681 (877)
T COG0525         604 SLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--EEEKRAARATLYYVLDTLLRL  681 (877)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--HHHHHHHHHHHHHHHHHHHHH
Confidence            679999999999999999999999999999999999999999999999999999986  556678999999999999999


Q ss_pred             hCCCchhhHHHHHHHhccCCCceEecCCCCCC-CcCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEecCHHHH
Q 003160          639 LHPFMPFVTEELWQSLRKRKEALIVSPWPQTS-LPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVI  717 (843)
Q Consensus       639 L~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~-~~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~~~~~~~  717 (843)
                      |||||||+||||||.++.. +||+.++||+++ ...|+.++..++.+.++|.+||++|+++++++++++++.+...++..
T Consensus       682 LhPfmPfiTEei~q~l~~~-~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~iR~~r~e~~~~~~~~~~~~~~~~~~~~  760 (877)
T COG0525         682 LHPFMPFITEEIWQKLPGT-ESIHLASWPEVDEELIDEEAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLVGSEELE  760 (877)
T ss_pred             hCCCCccchHHHHHhcCCC-CeEEeccCCCcchhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEeccHhHH
Confidence            9999999999999999875 699999999997 47788999999999999999999999999999999999888445566


Q ss_pred             HHHHHHHHHHHHHcCCcccceeecCCCCCCCCCceEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160          718 QYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARL  797 (843)
Q Consensus       718 ~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl  797 (843)
                      ..++.+...|..+.+++.  +.+.+..++.+..++. .+....++++++.|.||..+|++||+|+++++++|+++++++|
T Consensus       761 ~~~~~~~~~i~~~~~~~~--i~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~id~~~e~~rl~k~~~k~~~e~~~~~~kl  837 (877)
T COG0525         761 DRLEANEDDIKGLANLEE--LEILSPDPEEPPVEVT-AVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKL  837 (877)
T ss_pred             HHHHHHHHHHHHhcCcce--eeecccCccccchhHH-hhhccceEEEeccchhhHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            777888888998888864  4444333332334454 3457889999999999999999999999999999999999999


Q ss_pred             cCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160          798 SSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR  836 (843)
Q Consensus       798 ~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~  836 (843)
                      +|++|+.|||+++|++|++|+++++.++++++..|+.|.
T Consensus       838 ~ne~f~~kAp~~vv~~e~~~~~~~~~~~~~l~~~l~~l~  876 (877)
T COG0525         838 SNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLAVLK  876 (877)
T ss_pred             cchhhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999875

>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02943 aminoacyl-tRNA ligase	Back alignment and domain information

>PLN02381 valyl-tRNA synthetase	Back alignment and domain information

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional	Back alignment and domain information

>PRK05729 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00422 valS valyl-tRNA synthetase	Back alignment and domain information

>PRK14900 valS valyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional	Back alignment and domain information

>PLN02882 aminoacyl-tRNA ligase	Back alignment and domain information

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02843 isoleucyl-tRNA synthetase	Back alignment and domain information

>PRK13208 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00392 ileS isoleucyl-tRNA synthetase	Back alignment and domain information

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02959 aminoacyl-tRNA ligase	Back alignment and domain information

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family	Back alignment and domain information

>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00390 leuS leucyl-tRNA synthetase; Validated	Back alignment and domain information

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family	Back alignment and domain information

>PLN02563 aminoacyl-tRNA ligase	Back alignment and domain information

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12268 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00398 metG methionyl-tRNA synthetase	Back alignment and domain information

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases	Back alignment and domain information

>PLN02610 probable methionyl-tRNA synthetase	Back alignment and domain information

>PRK00133 metG methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12267 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK11893 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02224 methionine-tRNA ligase	Back alignment and domain information

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases	Back alignment and domain information

>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>TIGR00435 cysS cysteinyl-tRNA synthetase	Back alignment and domain information

>PRK12418 cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases	Back alignment and domain information

>PLN02946 cysteine-tRNA ligase	Back alignment and domain information

>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases	Back alignment and domain information

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A	Back alignment and domain information

>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>PRK01611 argS arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase	Back alignment and domain information

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases	Back alignment and domain information

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases	Back alignment and domain information

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases	Back alignment and domain information

>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases	Back alignment and domain information

>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>TIGR00456 argS arginyl-tRNA synthetase	Back alignment and domain information

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete	Back alignment and domain information

>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains	Back alignment and domain information

>PRK12451 arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02286 arginine-tRNA ligase	Back alignment and domain information

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases	Back alignment and domain information

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02563 aminoacyl-tRNA ligase	Back alignment and domain information

>PRK13354 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family	Back alignment and domain information

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase	Back alignment and domain information

>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases	Back alignment and domain information

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase	Back alignment and domain information

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase	Back alignment and domain information

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>PRK05912 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>PRK00390 leuS leucyl-tRNA synthetase; Validated	Back alignment and domain information

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family	Back alignment and domain information

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PRK12556 tryptophanyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14900 valS valyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK08560 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>TIGR00233 trpS tryptophanyl-tRNA synthetase	Back alignment and domain information

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed	Back alignment and domain information

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00126 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed	Back alignment and domain information

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167	Back alignment and domain information

>TIGR00234 tyrS tyrosyl-tRNA synthetase	Back alignment and domain information

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase	Back alignment and domain information

>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []	Back alignment and domain information

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases	Back alignment and domain information

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		843
1gax_A		862	Crystal Structure Of Thermus Thermophilus Valyl-Trn		1e-176
1jzq_A		821	Isoleucyl-Trna Synthetase Complexed With Isoleucyl-		3e-59
1qu2_A		917	Insights Into Editing From An Ile-Trna Synthetase S		2e-54
1wka_A		147	Structural Basis For Non-Cognate Amino Acid Discrim		3e-28
1wk9_A		146	Structural Basis For Non-Cognate Amino Acid Discrim		9e-28
4aq7_A		880	Ternary Complex Of E. Coli Leucyl-Trna Synthetase,		6e-18
1wz2_A		967	The Crystal Structure Of Leucyl-Trna Synthetase And		2e-16
1wkb_A		810	Crystal Structure Of Leucyl-Trna Synthetase From Th		2e-16
2v0c_A		878	Leucyl-Trna Synthetase From Thermus Thermophilus Co		3e-15
1obh_A		878	Leucyl-Trna Synthetase From Thermus Thermophilus Co		3e-15
2d54_A		502	Crystal Structure Of Methionyl Trna Synthetase Y225		4e-11
1a8h_A		500	Methionyl-Trna Synthetase From Thermus Thermophilus		5e-11
1woy_A		500	Crystal Structure Of Methionyl Trna Synthetase Y225		5e-11
3ziu_A		637	Crystal Structure Of Mycoplasma Mobile Leucyl-trna		1e-10
2x1l_A		524	Crystal Structure Of Mycobacterium Smegmatis Methio		3e-10
4dlp_A		536	Crystal Structure Of Methionyl-Trna Synthetase Metr		5e-10
3o0a_A		219	Crystal Structure Of The Wild Type Cp1 Hydrolitic D		8e-08
3pz0_A		221	The Crystal Structure Of Aaleurs-Cp1 Length = 221		1e-07
3pz5_A		201	The Crystal Structure Of Aaleurs-Cp1-D20 Length = 2		1e-07
2ajg_A		196	Crystal Structure Of The Editing Domain Of E. Coli		1e-07
2csx_A		497	Crystal Structure Of Aquifex Aeolicus Methionyl-Trn		1e-07
1wny_A		186	Isoleucyl-Trna Synthetase Editing Domain Length = 1		3e-05
1wk8_A		194	Isoleucyl-Trna Synthetase Editing Domain Complexed		3e-05
1ue0_A		182	Isoleucyl-Trna Synthetase Editing Domain Complexed		7e-05
1udz_A		182	Isoleucyl-Trna Synthetase Editing Domain Length = 1		8e-05
4eg1_A		542	Trypanosoma Brucei Methionyl-Trna Synthetase In Com		2e-04
4eg5_A		542	Trypanosoma Brucei Methionyl-Trna Synthetase In Com		2e-04
3tun_A		542	Trypanosoma Brucei Methionyl-Trna Synthetase In Com		2e-04

>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862