Citrus Sinensis ID: 003179
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 842 | 2.2.26 [Sep-21-2011] | |||||||
| Q02224 | 2701 | Centromere-associated pro | yes | no | 0.410 | 0.128 | 0.539 | 1e-98 | |
| Q6RT24 | 2474 | Centromere-associated pro | yes | no | 0.428 | 0.145 | 0.526 | 4e-98 | |
| Q54NP8 | 1922 | Kinesin-related protein 4 | yes | no | 0.413 | 0.181 | 0.501 | 1e-96 | |
| Q6S001 | 685 | Kinesin-related protein 1 | no | no | 0.400 | 0.491 | 0.515 | 1e-95 | |
| P46872 | 699 | Kinesin-II 85 kDa subunit | no | no | 0.429 | 0.517 | 0.448 | 2e-73 | |
| Q9P2E2 | 1029 | Kinesin-like protein KIF1 | no | no | 0.357 | 0.292 | 0.471 | 2e-72 | |
| P46873 | 699 | Osmotic avoidance abnorma | no | no | 0.419 | 0.505 | 0.442 | 5e-72 | |
| Q4R628 | 702 | Kinesin-like protein KIF3 | N/A | no | 0.415 | 0.498 | 0.445 | 6e-72 | |
| P28741 | 701 | Kinesin-like protein KIF3 | no | no | 0.385 | 0.463 | 0.462 | 6e-72 | |
| Q9Y496 | 699 | Kinesin-like protein KIF3 | no | no | 0.415 | 0.500 | 0.445 | 6e-72 |
| >sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2 | Back alignment and function desciption |
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Score = 361 bits (927), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 197/365 (53%), Positives = 248/365 (67%), Gaps = 19/365 (5%)
Query: 4 ICVAVRVRPPVSLETSGG----VFWKVEDNRVSLHRQHDTPVSGT-SYAFDHVFEETCSN 58
+ V VRVRP S E S G V+WK ++N + V G+ S+ FD VF +
Sbjct: 7 VAVCVRVRPLNSREESLGETAQVYWKTDNNVI-------YQVDGSKSFNFDRVFHGNETT 59
Query: 59 ARVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQM 118
VYE + II +A++G+NGT+FAYGQT+SGKT+TM GS D+ GVI + DIF I+
Sbjct: 60 KNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKK 119
Query: 119 MSNREFLVRVSYMEIYNEEINDLLAVENQKLQ---IHESLEHGVFVAGLREEIVNSAEQV 175
+REFL+RVSYMEIYNE I DLL QK++ I E + V+VA L EE+V ++E
Sbjct: 120 FPDREFLLRVSYMEIYNETITDLLCG-TQKMKPLIIREDVNRNVYVADLTEEVVYTSEMA 178
Query: 176 LKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAG 235
LK I GE +RH+GET MN RSSRSHTIFRM++ES+ K S+ +++VS LNLVDLAG
Sbjct: 179 LKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAG 238
Query: 236 SERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALG 295
SER A+TGA GVRLKEG +IN+SL LG VI KLSDG + G I YRDSKLTRILQ +LG
Sbjct: 239 SERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDG-QVGGFINYRDSKLTRILQNSLG 297
Query: 296 GNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEEL 355
GNAKT IICTI P +ET LQFAS AK + N VNE+ TD ALLKR + EI +L
Sbjct: 298 GNAKTRIICTITP--VSFDETLTALQFASTAKYMKNTPYVNEVSTDEALLKRYRKEIMDL 355
Query: 356 RRKLQ 360
+++L+
Sbjct: 356 KKQLE 360
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Essential for the maintenance of chromosomal stability through efficient stabilization of microtubule capture at kinetochores. Plays a key role in the movement of chromosomes toward the metaphase plate during mitosis. Is a slow plus end-directed motor whose activity is essential for metaphase chromosome alignment. Couples chromosome position to microtubule depolymerizing activity. The highly processive microtubule-dependent motor activity of CENPE serves to power chromosome congression and provides a flexible, motile tether linking kinetochores to dynamic spindle microtubules. Necessary for the mitotic checkpoint signal at individual kinetochores to prevent aneuploidy due to single chromosome loss. Required for the efficient recruitment of BUBR1, MAD1 and MAD2 to attached and newly unattached kinetochores. Stimulates mammalian BUBR1 kinase activity. Accumulates just before mitosis at the G2 phase of the cell cycle. Homo sapiens (taxid: 9606) |
| >sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1 | Back alignment and function description |
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| >sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6S001|KIF11_DICDI Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1 | Back alignment and function description |
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| >sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP85 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9P2E2|KIF17_HUMAN Kinesin-like protein KIF17 OS=Homo sapiens GN=KIF17 PE=2 SV=3 | Back alignment and function description |
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| >sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 OS=Caenorhabditis elegans GN=osm-3 PE=2 SV=4 | Back alignment and function description |
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| >sp|Q4R628|KIF3A_MACFA Kinesin-like protein KIF3A OS=Macaca fascicularis GN=KIF3A PE=2 SV=1 | Back alignment and function description |
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| >sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A OS=Mus musculus GN=Kif3a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=4 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 842 | ||||||
| 359492534 | 846 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.988 | 0.718 | 0.0 | |
| 302142166 | 840 | unnamed protein product [Vitis vinifera] | 0.985 | 0.988 | 0.716 | 0.0 | |
| 255537984 | 842 | ATP binding protein, putative [Ricinus c | 0.986 | 0.986 | 0.697 | 0.0 | |
| 224129800 | 816 | predicted protein [Populus trichocarpa] | 0.958 | 0.988 | 0.681 | 0.0 | |
| 297840641 | 827 | ZCF125 [Arabidopsis lyrata subsp. lyrata | 0.966 | 0.984 | 0.623 | 0.0 | |
| 449450306 | 814 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.993 | 0.622 | 0.0 | |
| 356554022 | 824 | PREDICTED: centromere-associated protein | 0.958 | 0.979 | 0.642 | 0.0 | |
| 449519436 | 814 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.960 | 0.993 | 0.618 | 0.0 | |
| 18406379 | 823 | P-loop containing nucleoside triphosphat | 0.965 | 0.987 | 0.612 | 0.0 | |
| 14475945 | 807 | kinesin motor protein (kin2), putative [ | 0.946 | 0.987 | 0.606 | 0.0 |
| >gi|359492534|ref|XP_002283486.2| PREDICTED: uncharacterized protein LOC100254027 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1218 bits (3151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/849 (71%), Positives = 707/849 (83%), Gaps = 13/849 (1%)
Query: 1 MEKICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNAR 60
MEKICVAVRVRPPV+ ETS +W+VEDNR+SLH+ TP+SG S+AFDHVF+++C+NAR
Sbjct: 1 MEKICVAVRVRPPVAQETSSSTYWRVEDNRISLHKTLGTPISGVSHAFDHVFDQSCANAR 60
Query: 61 VYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS 120
VYELL KDIIHAAVEGFNGT FAYGQTSSGKT+TMNGS +PG+I L VKD+F IQM +
Sbjct: 61 VYELLIKDIIHAAVEGFNGTAFAYGQTSSGKTYTMNGSESDPGIIHLAVKDVFRRIQMTA 120
Query: 121 NREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIE 180
+REFL+RVSYMEIYNEEINDLLAVENQKLQIHESLE+GVFVAGLREEIVN AEQVLK+IE
Sbjct: 121 DREFLIRVSYMEIYNEEINDLLAVENQKLQIHESLENGVFVAGLREEIVNGAEQVLKIIE 180
Query: 181 SGEVNRHFGETNMNVRSSRSHTIFRMVIESKGK----DNDSSSTDAIRVSVLNLVDLAGS 236
SGEVNRHFGETNMN RSSRSHTIFRMVIESK K +D SSTDA+RVSVLNLVDLAGS
Sbjct: 181 SGEVNRHFGETNMNARSSRSHTIFRMVIESKEKDSNYSSDYSSTDAVRVSVLNLVDLAGS 240
Query: 237 ERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGG 296
ERIAKTGA GVRLKEGKHINKSLM LGNVINKLSDG K GHIPYRDSKLTRILQPALGG
Sbjct: 241 ERIAKTGAGGVRLKEGKHINKSLMVLGNVINKLSDGAK--GHIPYRDSKLTRILQPALGG 298
Query: 297 NAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELR 356
NAKTSIICT+APEE HIEETKGTLQFASRAKRITNC QVNEILTDAALLKRQKLEIEELR
Sbjct: 299 NAKTSIICTVAPEEVHIEETKGTLQFASRAKRITNCAQVNEILTDAALLKRQKLEIEELR 358
Query: 357 RKLQGSHAGVLEQEILKLRNDMLKYELEREKLQLELEEERRSRKERDQCVREQQMRLQNH 416
+KLQGSHA VLEQEILKLRNDMLKYELE EKL ELEEER+S KERDQ +REQQM++ N
Sbjct: 359 KKLQGSHAEVLEQEILKLRNDMLKYELEHEKLATELEEERKSHKERDQWIREQQMKIDNL 418
Query: 417 NSLVTSSGGDGSHSEEQNSKRQSFCEECSDSNGICQGGAFRTPCSKAAPNAFVVKRSNYS 476
+SLVT S D S Q+S RQS EE DS+ G F TPC KA PNAFVVKRSNYS
Sbjct: 419 SSLVTLSDCDRKSS--QDSARQSLKEESIDSHSTGHGDGFSTPCFKAVPNAFVVKRSNYS 476
Query: 477 RLPEYSPLPDTFSNVADEDTWLKMNKGYIADLDSLQMTPATKVQSFPLNDGTPGCSNENY 536
RLP+YSPLPD SNVADEDTWLKMNKGY+ADLDSLQ+TPA +VQSFP ++ TPGCS ENY
Sbjct: 477 RLPDYSPLPDAISNVADEDTWLKMNKGYVADLDSLQITPARRVQSFPTSEATPGCSKENY 536
Query: 537 R-DVQKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESV 595
+ +VQ LKRQLE EEK++ +R + E+ +LN +LTGEISEL++E +IREIP RL ESV
Sbjct: 537 KQEVQVLKRQLELAIEEKDQLERNHMEQILLNKQLTGEISELQREAQLIREIPHRLCESV 596
Query: 596 VSSKDFYEDLLCSMKSFAADGESSTAKKLVSISEIGSSLFSTLETNFLMAMDGDKSFSNN 655
+ K+ Y+D++ M+SF D ESST+K L S SEIG++L STLE +F +++DG+++F N
Sbjct: 597 ANCKEIYKDVMSIMQSFVPDDESSTSKLLSSTSEIGTTLLSTLENHFSVSIDGNRTFPGN 656
Query: 656 DSLVREQCKVFCEKLKSTISALILSEKAPIDNKQGKNSPCSCNNK----EEESTCWKEKL 711
+SL++EQCKV CE+L TI++L+LSE + + + +N PCSC K E+ CWKEKL
Sbjct: 657 NSLIQEQCKVLCERLNKTITSLVLSEPSTVKPRHSRNLPCSCGYKGCALGGETACWKEKL 716
Query: 712 SSELNTIKEKYHGLEKDLDLNNKFLETSKEMYDSLEREFRLLQEERDSLLNKVSESSQTL 771
+ELNTI EKY LEK+L+ +N+ LE SKE Y SLEREF LL++ERDSLL VS+S+Q L
Sbjct: 717 DNELNTINEKYQSLEKELEHSNQLLEVSKERYHSLEREFHLLKDERDSLLQTVSKSTQKL 776
Query: 772 TMVTDQKENVLKDYNTEVEKKKNLEEEIKQFSVAFACRQKSLVSFHSDLKSKIEKLRAQN 831
+VTDQKENV K+ NTE++++K+LEEE+KQFSVAFA RQ+SL+SFHS KSKIE LR QN
Sbjct: 777 ALVTDQKENVSKELNTELQRRKDLEEEVKQFSVAFAHRQRSLMSFHSQFKSKIENLRGQN 836
Query: 832 PVSVPKSRG 840
PV + KS G
Sbjct: 837 PVPIAKSLG 845
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142166|emb|CBI19369.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255537984|ref|XP_002510057.1| ATP binding protein, putative [Ricinus communis] gi|223550758|gb|EEF52244.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224129800|ref|XP_002320674.1| predicted protein [Populus trichocarpa] gi|222861447|gb|EEE98989.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297840641|ref|XP_002888202.1| ZCF125 [Arabidopsis lyrata subsp. lyrata] gi|297334043|gb|EFH64461.1| ZCF125 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449450306|ref|XP_004142904.1| PREDICTED: uncharacterized protein LOC101212317 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356554022|ref|XP_003545349.1| PREDICTED: centromere-associated protein E-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449519436|ref|XP_004166741.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101212317 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|18406379|ref|NP_564744.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|6526975|dbj|BAA88112.1| kinesin-like protein [Arabidopsis thaliana] gi|6526979|dbj|BAA88114.1| kinesin-like protein [Arabidopsis thaliana] gi|332195465|gb|AEE33586.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|14475945|gb|AAK62792.1|AC027036_13 kinesin motor protein (kin2), putative [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 842 | ||||||
| TAIR|locus:2202862 | 823 | ZCF125 [Arabidopsis thaliana ( | 0.970 | 0.992 | 0.590 | 1.2e-246 | |
| RGD|1307115 | 1968 | Cenpe "centromere protein E" [ | 0.427 | 0.182 | 0.527 | 2.1e-100 | |
| MGI|MGI:1098230 | 2474 | Cenpe "centromere protein E" [ | 0.428 | 0.145 | 0.526 | 4.1e-98 | |
| UNIPROTKB|D6RBW0 | 1126 | CENPE "Centromere-associated p | 0.413 | 0.309 | 0.542 | 3.4e-97 | |
| ZFIN|ZDB-GENE-060929-860 | 2690 | cenpe "centromere protein E" [ | 0.416 | 0.130 | 0.521 | 2.8e-96 | |
| UNIPROTKB|Q02224 | 2701 | CENPE "Centromere-associated p | 0.413 | 0.128 | 0.542 | 3.5e-95 | |
| DICTYBASE|DDB_G0285101 | 1922 | kif4 "kinesin-7" [Dictyosteliu | 0.413 | 0.181 | 0.501 | 2.1e-94 | |
| UNIPROTKB|J9JHU7 | 2663 | CENPE "Uncharacterized protein | 0.412 | 0.130 | 0.530 | 3.1e-93 | |
| UNIPROTKB|E2R200 | 2684 | CENPE "Uncharacterized protein | 0.412 | 0.129 | 0.530 | 4.3e-93 | |
| UNIPROTKB|E1BQJ6 | 2616 | E1BQJ6 "Uncharacterized protei | 0.410 | 0.132 | 0.520 | 1e-92 |
| TAIR|locus:2202862 ZCF125 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2376 (841.5 bits), Expect = 1.2e-246, P = 1.2e-246
Identities = 492/833 (59%), Positives = 611/833 (73%)
Query: 1 MEKICVAVRVRPPVSLETSGGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNAR 60
MEKICVAVRVRPP +G WKVEDNR+SLH+ DTP++ S+AFDHVF+E+ +NA
Sbjct: 1 MEKICVAVRVRPPAP--ENGASLWKVEDNRISLHKSLDTPITTASHAFDHVFDESSTNAS 58
Query: 61 VYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS 120
VYELLTKDIIHAAVEGFNGT FAYGQTSSGKTFTM GS +PG+I V+D+F+ I M+S
Sbjct: 59 VYELLTKDIIHAAVEGFNGTAFAYGQTSSGKTFTMTGSETDPGIIRRSVRDVFERIHMIS 118
Query: 121 NREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIE 180
+REFL+RVSYMEIYNEEINDLLAVENQ+LQIHE LE GVFVAGL+EEIV+ AEQ+LKLI+
Sbjct: 119 DREFLIRVSYMEIYNEEINDLLAVENQRLQIHEHLERGVFVAGLKEEIVSDAEQILKLID 178
Query: 181 SGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSERIA 240
SGEVNRHFGETNMNV SSRSHTIFRMVIES+GKDN SS+DAIRVSVLNLVDLAGSERIA
Sbjct: 179 SGEVNRHFGETNMNVHSSRSHTIFRMVIESRGKDN--SSSDAIRVSVLNLVDLAGSERIA 236
Query: 241 KTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKT 300
KTGA GVRL+EGK+INKSLM LGNVINKLSD K R HIPYRDSKLTRILQPALGGNAKT
Sbjct: 237 KTGAGGVRLQEGKYINKSLMILGNVINKLSDSTKLRAHIPYRDSKLTRILQPALGGNAKT 296
Query: 301 SIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKLQ 360
IICTIAPEE HIEE+KGTLQFASRAKRITNC QVNEILTDAALLKRQKLEIEELR KLQ
Sbjct: 297 CIICTIAPEEHHIEESKGTLQFASRAKRITNCAQVNEILTDAALLKRQKLEIEELRMKLQ 356
Query: 361 GSHAGVLEQEILKLRNDMXXXXXXXXXXXXXXXXXXXXXXXXDQCVREQQMRLQNHNSLV 420
GSHA VLEQEIL L N M + C++EQQM+++N N+ V
Sbjct: 357 GSHAEVLEQEILNLSNQMLKYELECERLKTQLEEEKRKQKEQENCIKEQQMKIENLNNFV 416
Query: 421 TSSGGDGSHSEEQNSKRQSFCEECSDSNGICQGGAFRTPCSKAAPNAFVVKRSN-YSRLP 479
T+S + SE+ R++ C+ ++ G TPC K+A +FVV RSN YS L
Sbjct: 417 TNSDFKRNQSEDFIISRKTPDGLCNVNDTSDVPG---TPCFKSASRSFVVARSNNYSGLS 473
Query: 480 EYSPLPDTFSNVADEDTWLKMNKGYIADLDSLQMTPATKVQSFPLNDGTPGCSNENYRDV 539
++SP+ + +VADEDTW+K+NKG++ADLD +Q TPA K Q PL+ T C EN+ +V
Sbjct: 474 DFSPMVHSLGDVADEDTWMKLNKGFVADLDQIQFTPAVKCQPTPLSIATTECPRENHSEV 533
Query: 540 QKLKRQLENVTEEKNEFQRKYSEEKILNARLTGEISELRQEVLVIREIPRRLYESVVSSK 599
+ LK +++ +T E + Q K++E+ +L+ L E+SEL+QE L ++EIP RL ESV + K
Sbjct: 534 EDLKSRIQLLTNENDSLQVKFNEQVLLSNNLMQEMSELKQETLTVKEIPNRLSESVANCK 593
Query: 600 DFYEDLLCSMKSFAADGESSTAKKLVSISEIGSSLFSTLETNFLMAMDGDKSFSNNDSLV 659
D Y+D++ +MKS D ES TA L+ +EI +SL +TLET F M MDG K+ S+ D +
Sbjct: 594 DVYKDVIVTMKSLITDKESPTANLLLGTTEITTSLLATLETQFSMIMDGQKTGSSIDHPL 653
Query: 660 REQCKVFCEKLKSTISALILSEKAPIDNKQGKNSPCSCNNKEEESTCWKEK-LSSELNTI 718
+ + LK+T + L+LS+ Q K+ + +NK +E+ +EK L SEL I
Sbjct: 654 SDHWETLRVNLKNT-TTLLLSDA------QAKDEFLNSHNKGQETAALEEKKLKSELIII 706
Query: 719 KEKYHGLEKDLDLNNKFLETSKEMYDSXXXXXXXXXXXXDSLLNKVSESSQTLTMVTDQK 778
KE+Y+ LEK+L L+ + LE S+E ++ DSL K+S+S+Q L ++ K
Sbjct: 707 KERYNELEKELCLDKQLLEASRESHEKLIKEVQFLKEERDSLDRKISQSTQRLRVIASDK 766
Query: 779 ENVLKDYNTEVEKKKNLEEEIKQFSVAFACRQKSLVSFHSDLKSKIEKLRAQN 831
EN LKD N EV+++K++EEEIK S+AFA R KS VSFHS++KSK++KL QN
Sbjct: 767 ENALKDLNVEVKRRKDMEEEIKHISIAFATRHKSFVSFHSEIKSKMQKLTTQN 819
|
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| RGD|1307115 Cenpe "centromere protein E" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1098230 Cenpe "centromere protein E" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D6RBW0 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060929-860 cenpe "centromere protein E" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0285101 kif4 "kinesin-7" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9JHU7 CENPE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R200 CENPE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BQJ6 E1BQJ6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 842 | |||
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 1e-173 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-141 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-139 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-132 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 1e-117 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 1e-109 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 1e-107 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 1e-106 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 1e-106 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 1e-101 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 1e-97 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 7e-91 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 9e-85 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 1e-84 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 9e-75 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 1e-68 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 3e-66 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 6e-65 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 5e-39 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.001 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.002 | |
| pfam13870 | 177 | pfam13870, DUF4201, Domain of unknown function (DU | 0.004 |
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
Score = 502 bits (1294), Expect = e-173
Identities = 185/328 (56%), Positives = 234/328 (71%), Gaps = 8/328 (2%)
Query: 3 KICVAVRVRPPVSLE-TSGGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARV 61
KI V+VRVRP E + V W ++++ + G S+ FD VF +N V
Sbjct: 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEE---STPGQSFTFDRVFGGESTNREV 57
Query: 62 YELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSN 121
YE + K ++ +A+EG+NGT+FAYGQTSSGKTFTM+G PG+I L V+DIF IQ +
Sbjct: 58 YERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPD 117
Query: 122 REFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIES 181
REFL+RVSY+EIYNE+I DLL+ Q+L+I E GV VAGL EEIV S E +L+LI
Sbjct: 118 REFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIAR 177
Query: 182 GEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSERIAK 241
GE NRH GET+ N RSSRSHTIF++ IES+ + + S +RVS LNL+DLAGSER ++
Sbjct: 178 GEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSES--GTVRVSTLNLIDLAGSERASQ 235
Query: 242 TGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTS 301
TGA G R KEG INKSL+ LG VI+KLS+G K GHIPYRDSKLTRILQP+L GNA+T+
Sbjct: 236 TGA-GERRKEGSFINKSLLTLGTVISKLSEG-KNSGHIPYRDSKLTRILQPSLSGNARTA 293
Query: 302 IICTIAPEEDHIEETKGTLQFASRAKRI 329
IICTI+P H+EET TL+FASRAK++
Sbjct: 294 IICTISPASSHVEETLNTLKFASRAKKV 321
|
This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321 |
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 842 | |||
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 98.0 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 96.67 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 96.52 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 95.03 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 94.72 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 94.58 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 94.21 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.99 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 93.04 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 92.99 | |
| PRK06620 | 214 | hypothetical protein; Validated | 92.61 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 92.51 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 92.51 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 91.65 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 91.52 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 91.52 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 91.51 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 90.41 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 90.05 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 89.5 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 89.4 | |
| PRK09087 | 226 | hypothetical protein; Validated | 89.38 | |
| PRK12377 | 248 | putative replication protein; Provisional | 89.34 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 89.13 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 89.07 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 88.92 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 88.72 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 88.71 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 88.48 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 88.35 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 88.35 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 88.25 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 88.1 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 88.08 | |
| PRK06526 | 254 | transposase; Provisional | 87.8 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 87.79 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 87.46 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 87.15 | |
| PRK08116 | 268 | hypothetical protein; Validated | 87.13 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 87.12 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 86.59 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 86.51 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 86.29 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 86.23 | |
| PRK11637 | 428 | AmiB activator; Provisional | 86.15 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 85.74 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 85.22 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 84.96 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 84.56 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 84.23 | |
| PRK08181 | 269 | transposase; Validated | 84.11 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 83.88 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 83.81 | |
| PRK08727 | 233 | hypothetical protein; Validated | 83.67 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 83.54 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 83.42 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 82.82 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 81.62 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 81.5 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 80.88 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 80.67 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 80.04 |
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-92 Score=815.11 Aligned_cols=395 Identities=39% Similarity=0.573 Sum_probs=358.0
Q ss_pred CCceEEEEEeCCCCCCccCC--CceEEEcCCeEEEeecCCCCCCCcceeecEeeCCC-------CChHHHHHHHHHHHHH
Q 003179 1 MEKICVAVRVRPPVSLETSG--GVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEET-------CSNARVYELLTKDIIH 71 (842)
Q Consensus 1 mE~IrV~VRVRP~~~~E~~~--~~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~-------asQeeVYe~v~~pLV~ 71 (842)
+.+|.|+|||||++.+|... .+++.+.++++++.++.++ .....|+||++||.. ++|..||+.++.++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~-k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS-KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc-ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 46899999999999999654 4567889999998777654 334459999999764 6899999999999999
Q ss_pred HHhcCCCeeEEeeccCCCCccccccCCC--CCCChHHhHHHHHHHHHHhc--cccceEEEEeeeeeeccccccccc-ccc
Q 003179 72 AAVEGFNGTVFAYGQTSSGKTFTMNGSA--DNPGVISLGVKDIFDAIQMM--SNREFLVRVSYMEIYNEEINDLLA-VEN 146 (842)
Q Consensus 72 svL~GyN~TIfAYGQTGSGKTyTM~Gs~--~~~GIIPRal~dLF~~I~~~--~~~ef~V~VSylEIYNE~V~DLL~-~~~ 146 (842)
.+++|||+||||||||||||||||+|.. +++|||||+|++||..|... .+..|.|.|||+|||||.|+|||+ |.+
T Consensus 82 ~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~ 161 (1221)
T KOG0245|consen 82 HAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKS 161 (1221)
T ss_pred HHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCC
Confidence 9999999999999999999999999987 89999999999999999864 356899999999999999999999 543
Q ss_pred -ccceeeecCCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEE
Q 003179 147 -QKLQIHESLEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRV 225 (842)
Q Consensus 147 -~~L~IrEd~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~ 225 (842)
+.|++||+|..|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||+|++.+...+.+. +....++
T Consensus 162 kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~-~l~sek~ 240 (1221)
T KOG0245|consen 162 KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDT-GLDSEKV 240 (1221)
T ss_pred CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccC-CCcceee
Confidence 68999999999999999999999999999999999999999999999999999999999999998887653 3457789
Q ss_pred EeEEEeeccCCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCC----CCCCcccCCCCccccccccccCCCccee
Q 003179 226 SVLNLVDLAGSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGV----KQRGHIPYRDSKLTRILQPALGGNAKTS 301 (842)
Q Consensus 226 SkL~LVDLAGSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~----kk~~hIPYRDSKLTrLLqDSLGGNskT~ 301 (842)
|+|+|||||||||++.+|+.|+|+|||.+|||||.+||+||.||++.. ++..+||||||.|||||+++||||+||+
T Consensus 241 SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTa 320 (1221)
T KOG0245|consen 241 SKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTA 320 (1221)
T ss_pred eeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhh
Confidence 999999999999999999999999999999999999999999999754 3455999999999999999999999999
Q ss_pred eeecCCCCcCchHhHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcccch-----------hhHHH
Q 003179 302 IICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKLQGSHAG-----------VLEQE 370 (842)
Q Consensus 302 mIatISPs~~~~eETLsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr~~L~~~~~~-----------~~e~e 370 (842)
|||+|||++.||+|||+|||||+|||.|+|.|+|||++. +.+|++|+.|+.+||..+.+.... ....+
T Consensus 321 MIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpn-aKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~ 399 (1221)
T KOG0245|consen 321 MIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPN-AKLIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPE 399 (1221)
T ss_pred hhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCcc-HHHHHHHHHHHHHHHHHHhccccccccccCCccccccccc
Confidence 999999999999999999999999999999999999865 578999999999999999875422 23678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003179 371 ILKLRNDMLKYELEREKLQLELEEERRS 398 (842)
Q Consensus 371 i~kLr~~~~~~e~e~e~l~~elee~~~~ 398 (842)
+.++++++.+.|.+..++.+.++|..+.
T Consensus 400 ~e~~~~~L~E~Ek~mael~etW~EKl~~ 427 (1221)
T KOG0245|consen 400 IEELRERLQETEKIMAELNETWEEKLRE 427 (1221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877653
|
|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 842 | ||||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 5e-91 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 5e-71 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-69 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 1e-68 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 1e-68 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 2e-68 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 4e-68 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 1e-66 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 2e-62 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-61 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 2e-60 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 2e-60 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 1e-59 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 4e-57 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 2e-56 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 2e-55 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 3e-55 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 3e-55 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 3e-55 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 3e-55 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 4e-55 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 7e-55 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 3e-54 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 5e-54 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 4e-53 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 7e-53 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 1e-52 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-52 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 6e-52 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 2e-51 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 9e-50 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 4e-49 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 2e-48 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 2e-48 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 2e-48 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 7e-48 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 1e-47 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-45 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 6e-45 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 2e-44 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 2e-43 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-42 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 2e-42 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 2e-42 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 4e-42 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 5e-42 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 2e-41 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 5e-41 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-40 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-40 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-40 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-38 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 7e-38 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 1e-34 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 4e-34 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 7e-32 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 1e-18 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 2e-18 |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
|
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 520 bits (1342), Expect = e-180
Identities = 181/352 (51%), Positives = 226/352 (64%), Gaps = 11/352 (3%)
Query: 2 EKICVAVRVRPPVSLETSGG--VFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNA 59
+ V VRVRP S E S G + + +++ S+ FD VF +
Sbjct: 4 GAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD----GSKSFNFDRVFHGNETTK 59
Query: 60 RVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMM 119
VYE + II +A++G+NGT+FAYGQT+SGKT+TM GS D+ GVI + DIF I+
Sbjct: 60 NVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF 119
Query: 120 SNREFLVRVSYMEIYNEEINDLLAV--ENQKLQIHESLEHGVFVAGLREEIVNSAEQVLK 177
+REFL+RVSYMEIYNE I DLL + + L I E + V+VA L EE+V ++E LK
Sbjct: 120 PDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALK 179
Query: 178 LIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGSE 237
I GE +RH+GET MN RSSRSHTIFRM++ES+ K S+ +++VS LNLVDLAGSE
Sbjct: 180 WITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSE 239
Query: 238 RIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGN 297
R A+TGA GVRLKEG +IN+SL LG VI KLSDG + G I YRDSKLTRILQ +LGGN
Sbjct: 240 RAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDG-QVGGFINYRDSKLTRILQNSLGGN 298
Query: 298 AKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQK 349
AKT IICTI P +ET LQFAS AK + N VNE+ TD
Sbjct: 299 AKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHHH 348
|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 842 | |||
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.96 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.95 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.9 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 93.71 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 92.52 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 91.43 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 90.66 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 88.01 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 87.97 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 87.49 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 87.45 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 87.25 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 87.08 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 86.32 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 85.47 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 85.24 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 84.98 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 84.81 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 84.12 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 83.37 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 83.19 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 83.16 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 83.02 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 82.61 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 82.12 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 81.45 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 81.06 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 80.8 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 80.09 |
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-89 Score=749.47 Aligned_cols=332 Identities=56% Similarity=0.829 Sum_probs=292.3
Q ss_pred CCceEEEEEeCCCCCCccCCC----ceEEEcCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcC
Q 003179 1 MEKICVAVRVRPPVSLETSGG----VFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEG 76 (842)
Q Consensus 1 mE~IrV~VRVRP~~~~E~~~~----~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~G 76 (842)
.++|+|+|||||++..|...+ ..|..+++.+... ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G 76 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV------DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQG 76 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET------TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTT
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC------CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999886432 2345555554321 234789999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhccccceEEEEeeeeeecccccccccccc--ccceeeec
Q 003179 77 FNGTVFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMSNREFLVRVSYMEIYNEEINDLLAVEN--QKLQIHES 154 (842)
Q Consensus 77 yN~TIfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~~~ef~V~VSylEIYNE~V~DLL~~~~--~~L~IrEd 154 (842)
||+||||||||||||||||+|+.+++|||||++++||+.++..++..|.|+|||+|||||+|+|||++.. .++.++++
T Consensus 77 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed 156 (349)
T 1t5c_A 77 YNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIRED 156 (349)
T ss_dssp CCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEET
T ss_pred CccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEEC
Confidence 9999999999999999999999999999999999999999988888999999999999999999998754 57999999
Q ss_pred CCCceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeecc
Q 003179 155 LEHGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLA 234 (842)
Q Consensus 155 ~~~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLA 234 (842)
+.++++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++...............|+|+|||||
T Consensus 157 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLA 236 (349)
T 1t5c_A 157 VNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLA 236 (349)
T ss_dssp TTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECC
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998776543333446788999999999
Q ss_pred CCccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchH
Q 003179 235 GSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIE 314 (842)
Q Consensus 235 GSER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~e 314 (842)
||||..++++.|.|++|+.+||+||++||+||.+|+++.+ ..|||||||||||||||+|||||+|+|||||||+ +++
T Consensus 237 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~-~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ 313 (349)
T 1t5c_A 237 GSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQV-GGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFD 313 (349)
T ss_dssp CGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCC-TTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSH
T ss_pred CCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCC-CCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHH
Confidence 9999999999999999999999999999999999998643 4699999999999999999999999999999997 589
Q ss_pred hHHHHHHHHHHhhcccccceeccccCH
Q 003179 315 ETKGTLQFASRAKRITNCVQVNEILTD 341 (842)
Q Consensus 315 ETLsTLrFAsRAk~IkN~~~vNe~~~~ 341 (842)
||++||+||+||++|+|.|++|+....
T Consensus 314 ETlsTL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 314 ETLTALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred HHHHHHHHHHHHhhcccCceeccCCCC
Confidence 999999999999999999999998764
|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 842 | ||||
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 3e-81 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 1e-80 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 1e-76 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 1e-74 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 5e-74 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 9e-72 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 6e-71 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 2e-69 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 6e-64 |
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Neurospora crassa [TaxId: 5141]
Score = 263 bits (672), Expect = 3e-81
Identities = 150/364 (41%), Positives = 203/364 (55%), Gaps = 21/364 (5%)
Query: 2 EKICVAVRVRPPVSLETSGG--VFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNA 59
I V R RP +E G + + S+ FD VF+ +C +
Sbjct: 5 NSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQ---GSFTFDRVFDMSCKQS 61
Query: 60 RVYELLTKDIIHAAVEGFNGTVFAYGQTSSGKTFTM----NGSADNPGVISLGVKDIFDA 115
+++ K + + G+NGTVFAYGQT +GK++TM D GVI V+ IF +
Sbjct: 62 DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTS 121
Query: 116 IQMM-SNREFLVRVSYMEIYNEEINDLLAVENQKLQIHESLEHGVFVAGLREEIVNSAEQ 174
I +N E+ VRVSYMEIY E I DLLA +N L +HE GV+V GL E V+S ++
Sbjct: 122 ILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQE 181
Query: 175 VLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLA 234
V +++ G R TNMN SSRSH+IF + I K + S + L LVDLA
Sbjct: 182 VYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGS-----AKSGQLFLVDLA 236
Query: 235 GSERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPAL 294
GSE++ KTGA G L+E K INKSL ALG VIN L+DG + H+PYRDSKLTRILQ +L
Sbjct: 237 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG--KSSHVPYRDSKLTRILQESL 294
Query: 295 GGNAKTSIICTIAPEEDHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEE 354
GGN++T++I +P + ET TL+F RAK I N +VN L+ A L K + +
Sbjct: 295 GGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL----KQMLAK 350
Query: 355 LRRK 358
+ +
Sbjct: 351 AKTQ 354
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 842 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.93 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.31 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.13 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 88.39 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.79 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 83.74 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.57 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.02 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 80.47 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=6.2e-83 Score=696.63 Aligned_cols=343 Identities=36% Similarity=0.527 Sum_probs=294.3
Q ss_pred ceEEEEEeCCCCCCccC--CCceEEEcCCeEEEeecCCCCCCCcceeecEeeCCCCChHHHHHHHHHHHHHHHhcCCCee
Q 003179 3 KICVAVRVRPPVSLETS--GGVFWKVEDNRVSLHRQHDTPVSGTSYAFDHVFEETCSNARVYELLTKDIIHAAVEGFNGT 80 (842)
Q Consensus 3 ~IrV~VRVRP~~~~E~~--~~~~~~v~~~~v~l~~~~~~~~~~~sF~FD~VF~~~asQeeVYe~v~~pLV~svL~GyN~T 80 (842)
||+|+|||||+.+.|.. ...++.+.++........ ....+.|.||+||+++++|++||+.+ .|+|+++++|||+|
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~--~~~~~~f~FD~vf~~~~~q~~vy~~v-~~lv~~~l~G~n~~ 77 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK--DDKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVC 77 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECS--SSSEEEEECSEEECTTCCHHHHHHTT-THHHHHHHTTCEEE
T ss_pred CeEEEEEcCCCChhhcccCCCCeEEeCCCCeEEecCC--CCCceEEECCeecCCCCCHHHHHHHH-HHHHHHHhcCCcee
Confidence 79999999999887742 234455555444433222 23457899999999999999999975 79999999999999
Q ss_pred EEeeccCCCCccccccCCCCCCChHHhHHHHHHHHHHhcc-ccceEEEEeeeeeecccccccccccc---ccceeeecCC
Q 003179 81 VFAYGQTSSGKTFTMNGSADNPGVISLGVKDIFDAIQMMS-NREFLVRVSYMEIYNEEINDLLAVEN---QKLQIHESLE 156 (842)
Q Consensus 81 IfAYGQTGSGKTyTM~Gs~~~~GIIPRal~dLF~~I~~~~-~~ef~V~VSylEIYNE~V~DLL~~~~---~~L~IrEd~~ 156 (842)
|||||||||||||||+|+.+++|||||++++||..+.... ...|.|++||+|||||+|+|||++.. ..+.+++++.
T Consensus 78 i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~ 157 (364)
T d1sdma_ 78 IFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSK 157 (364)
T ss_dssp EEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTT
T ss_pred eeccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeeccc
Confidence 9999999999999999999999999999999999998654 46899999999999999999998765 3678999999
Q ss_pred CceEecCcEEEEcCCHHHHHHHHhhccccccccccCcCCCCCCceeEEEEEEEeecCCCCCCCCCceEEEeEEEeeccCC
Q 003179 157 HGVFVAGLREEIVNSAEQVLKLIESGEVNRHFGETNMNVRSSRSHTIFRMVIESKGKDNDSSSTDAIRVSVLNLVDLAGS 236 (842)
Q Consensus 157 ~gv~V~gLtev~V~S~eE~l~lL~~G~~nR~~~sT~~N~~SSRSHaIFtI~Ve~~~~~~~~~~~~~v~~SkL~LVDLAGS 236 (842)
++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||++.|.+...+ ......|+|+|||||||
T Consensus 158 ~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~-----~~~~~~~kl~~vDLAGs 232 (364)
T d1sdma_ 158 GMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-----TQAIARGKLSFVDLAGS 232 (364)
T ss_dssp SCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETT-----TCCEEEEEEEEEECCCC
T ss_pred CccccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccC-----cceeeeEEEEeechhhc
Confidence 9999999999999999999999999999999999999999999999999999987754 33567899999999999
Q ss_pred ccccccCCCchhhhhhhhhhHHHHHHHHHHHHhccCCCCCCcccCCCCccccccccccCCCcceeeeecCCCCcCchHhH
Q 003179 237 ERIAKTGADGVRLKEGKHINKSLMALGNVINKLSDGVKQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEDHIEET 316 (842)
Q Consensus 237 ER~~ktga~G~rlkEg~~INkSL~aLg~VI~ALSe~~kk~~hIPYRDSKLTrLLqDSLGGNskT~mIatISPs~~~~eET 316 (842)
||..++++.|.+++|+.+||+||++|++||.+|+++. .|||||+||||+||+|+|||||+|+|||||||+..+++||
T Consensus 233 Er~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~---~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eT 309 (364)
T d1sdma_ 233 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN---QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDET 309 (364)
T ss_dssp SCCCC---------CCCTTCHHHHHHHHHHHHHHHTC---SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHH
T ss_pred cccccccccCceeeeccccccchhhHHHHHHHHHcCC---CcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHH
Confidence 9999999999999999999999999999999999854 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHH
Q 003179 317 KGTLQFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRRKL 359 (842)
Q Consensus 317 LsTLrFAsRAk~IkN~~~vNe~~~~~~li~~lk~EI~~Lr~~L 359 (842)
++||+||+||++|+|.|.+|+... .+.+|+.++..|+.++
T Consensus 310 l~TL~fa~~ak~i~n~p~~n~~~~---~~~~l~~~i~~l~~~~ 349 (364)
T d1sdma_ 310 HNSLTYASRVRSIVNDPSKNVSSK---EVARLKKLVSYWKEQA 349 (364)
T ss_dssp HHHHHHHHHHTTCCCCCCCCEECH---HHHHHHTTTTCC----
T ss_pred HHHHHHHHHHhhcccCCcccCCHH---HHHHHHHHHHHHHHHH
Confidence 999999999999999999998653 3556666666666554
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
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| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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