Citrus Sinensis ID: 003183

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-
MFFLLNNFLTVYGIIVSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDATSNSFLLDDNSSIPFSVDDLSNSLQEKDFLDVKAAEELLENPAFEFLYEA
ccccHHHHHHHHcccccccHHHHHHHHHHHccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHcc
ccccHHHHHHHHccccccHHHHHHHHHHHHHcccccEEcccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHcccHHcHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccEEccccccccEccccccHHccccccccccccHHHHHcccHHHHccc
MFFLLNNFLTVYGIIVSSDEVTACKRLLEKvglegyqigKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEaekvpvvqevpvIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSllstpikkmsehisapatqslenghhvieenisnepqsatpvkklgtesdsKLRRSHIEHQHENVDALINCVAKnlgycngkpvAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAieneddndhMAYWLSNTSTLLFLLQRSLKaagasgatphkkpptatslfgrmamgfrsspsSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIqaprtskgsvlrsgrsfgkdsasSHWQSIIDSLNTLLSTlkqnfvppvlVQKIFTQTFSYINVQLFNSLLLRrecctfsngeyvKAGLAELELWCCQAkeeyagssWDELKHIRQAVGFLVIHQKYRISYdeitndlcpilSVQQLYRICTLywddnyntrsvspnVISSMRILMtedsndatsnsfllddnssipfsvddlsnslqekdfLDVKAAEELLenpafeflyea
MFFLLNNFLTVYGIIVSSDEVTACKRLLEkvglegyqigktkvflragQMADLDARrtevlgrsasiiqrkvrsylSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAaittqcawrgkVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKkeaekvpvvqevpvIDHAVVeeltseneklkTLVSSlekkidetekkfeetskiseerlKQALEAESKIVQLKTAMHRLEEkvsdmeteNQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENisnepqsatpvkkLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAagasgatphkkppTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQaprtskgsvlrsgRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYwddnyntrsvSPNVISSMRILMTEDSNDATSNSFLLDDNSSIPFSVDDLSNSLQEKDFLDVKAAEELlenpafeflyea
MFFLLNNFLTVYGIIVSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMkeievakkeaekvpvvqevpviDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRsspssanlaaaaalaVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKElssllslCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDATSNSFLLDDNSSIPFSVDDLSNSLQEKDFLDVKAAEELLENPAFEFLYEA
*FFLLNNFLTVYGIIVSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLK**********************LTWRL*****************************************************PVVQEVPVIDHAVVE*******************************************************************************************************************************************NVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSL************************************LAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQA**********************HWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRIL*************************************L*V*****LL***AFEF****
MFFLLNNFLTVYGIIVSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAAR*******************************DMEEAKTQ***************************************************************************************************************************************************************************************************************NGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQR*********************L************************VVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKEL***********************************SIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVIS******************LLDDNSSIPFSVDDLSNSLQEKDFLDVKAAEELLENPAFEFLYEA
MFFLLNNFLTVYGIIVSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKA************PTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPR*********************WQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDATSNSFLLDDNSSIPFSVDDLSNSLQEKDFLDVKAAEELLENPAFEFLYEA
MFFLLNNFLTVYGIIVSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLS***************************************************RSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKA***********************************AAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPR*****************ASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDATSNSFLLDDNSSIPFSVDDLSNSLQEKDFLDVKAAEELLENPAFEFLYEA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFFLLNNFLTVYGIIVSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPVVQEVPVIDHAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSEERLKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISSMRILMTEDSNDATSNSFLLDDNSSIPFSVDDLSNSLQEKDFLDVKAAEELLENPAFEFLYEA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query841 2.2.26 [Sep-21-2011]
Q02440 1829 Unconventional myosin-Va yes no 0.430 0.197 0.318 3e-38
Q9Y4I1 1855 Unconventional myosin-Va yes no 0.430 0.195 0.305 5e-34
Q99104 1853 Unconventional myosin-Va yes no 0.422 0.191 0.310 1e-33
Q9QYF3 1828 Unconventional myosin-Va yes no 0.419 0.193 0.308 1e-33
Q9ULV0 1848 Unconventional myosin-Vb no no 0.450 0.205 0.281 1e-30
P21271 1818 Unconventional myosin-Vb no no 0.279 0.129 0.325 3e-30
P54697 2245 Myosin-J heavy chain OS=D yes no 0.292 0.109 0.326 3e-29
P70569 1846 Unconventional myosin-Vb no no 0.322 0.146 0.303 4e-28
Q9NQX4 1742 Unconventional myosin-Vc no no 0.444 0.214 0.261 7e-23
Q876G91568 Myosin-2 OS=Saccharomyces N/A no 0.373 0.200 0.277 1e-22
>sp|Q02440|MYO5A_CHICK Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1 Back     alignment and function desciption
 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 213/399 (53%), Gaps = 37/399 (9%)

Query: 8    FLTVYGII-----VSSDEVTACKRLLEKVGLEG--YQIGKTKVFLRAGQMADLDARRTEV 60
            F + Y ++     V SD    CK +LEK+ L+   YQ GKTK+F RAGQ+A L+  R + 
Sbjct: 707  FFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADK 766

Query: 61   LGRSASI-IQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRD 119
            L R+A I IQ+ +R +L RK Y+ +RR+AI IQ   RG  AR     +RR  + + IQ+ 
Sbjct: 767  L-RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKF 825

Query: 120  LRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMK 179
             RMY+ +K Y+ M  + + +Q  +RG   RN+ +   +   SI+IQ H R +LAR+HY +
Sbjct: 826  QRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHR 885

Query: 180  LKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQ------- 232
              KA +  QC +R  +A+REL+KLK+ AR     +     LE ++ +L  ++        
Sbjct: 886  TLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945

Query: 233  -LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKE------KLMKEI-----EVAKKE 280
             L ++M  ++E   + E  KL+S ++ +++  +E+K        L +EI     E+ + +
Sbjct: 946  SLLEKMN-NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004

Query: 281  AEKVPVVQEVPVIDH---AVVEELTSENEKLKTLVSSLEKKIDETEKKFEET--SKISEE 335
             EK  + +      H    +V EL  +N  LKT    L ++I +  K+  ET   K+ EE
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064

Query: 336  RLKQALEAESKIVQLKTAMH---RLEEKVSDMETENQIL 371
              +  L+   + ++ +  ++   RLEE+  D++ E  ++
Sbjct: 1065 TKQLELDLNDERLRYQNLLNEFSRLEERYDDLKDEMNLM 1103
Processive actin-based motor that can move in large steps approximating the 36-nm pseudo-repeat of the actin filament. May be involved in melanosome transport, or alternatively, it may be required for some polarization process involved in dendrite formation.
Gallus gallus (taxid: 9031)
>sp|Q9Y4I1|MYO5A_HUMAN Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2 Back     alignment and function description
>sp|Q99104|MYO5A_MOUSE Unconventional myosin-Va OS=Mus musculus GN=Myo5a PE=1 SV=2 Back     alignment and function description
>sp|Q9QYF3|MYO5A_RAT Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1 Back     alignment and function description
>sp|Q9ULV0|MYO5B_HUMAN Unconventional myosin-Vb OS=Homo sapiens GN=MYO5B PE=1 SV=3 Back     alignment and function description
>sp|P21271|MYO5B_MOUSE Unconventional myosin-Vb OS=Mus musculus GN=Myo5b PE=2 SV=2 Back     alignment and function description
>sp|P54697|MYOJ_DICDI Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2 Back     alignment and function description
>sp|P70569|MYO5B_RAT Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1 Back     alignment and function description
>sp|Q9NQX4|MYO5C_HUMAN Unconventional myosin-Vc OS=Homo sapiens GN=MYO5C PE=1 SV=2 Back     alignment and function description
>sp|Q876G9|MYO2_SACBA Myosin-2 OS=Saccharomyces bayanus GN=MYO2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query841
224070005 1513 predicted protein [Populus trichocarpa] 0.992 0.551 0.850 0.0
225437918 1518 PREDICTED: myosin-H heavy chain [Vitis v 0.990 0.548 0.805 0.0
297744256 1540 unnamed protein product [Vitis vinifera] 0.990 0.540 0.805 0.0
356545924 1549 PREDICTED: myosin-J heavy chain-like [Gl 0.991 0.538 0.790 0.0
356536864 1611 PREDICTED: myosin-J heavy chain-like [Gl 0.982 0.512 0.787 0.0
116047943 1512 myosin XI-2 [Nicotiana benthamiana] 0.986 0.548 0.787 0.0
29170491 1362 myosin XI [Nicotiana tabacum] 0.978 0.604 0.777 0.0
13384201 1515 myosin subfamily XI heavy chain [Petrose 0.989 0.549 0.771 0.0
356505090 1519 PREDICTED: myosin-Va-like [Glycine max] 0.985 0.545 0.769 0.0
2444178 1502 unconventional myosin [Helianthus annuus 0.979 0.548 0.759 0.0
>gi|224070005|ref|XP_002303100.1| predicted protein [Populus trichocarpa] gi|222844826|gb|EEE82373.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1462 bits (3785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 716/842 (85%), Positives = 780/842 (92%), Gaps = 7/842 (0%)

Query: 5    LNNFLTVYGIIV------SSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRT 58
             + F+  +G++       SSDEVTACKRLLEKVGL GYQIGKTKVFLRAGQMA+LDARR+
Sbjct: 673  FDEFVDRFGLLAPEVLDGSSDEVTACKRLLEKVGLTGYQIGKTKVFLRAGQMAELDARRS 732

Query: 59   EVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQR 118
            EVLGRSASIIQRKVRSYLSR+++I LRRSAI IQ+ACRGQ+AR VYE+MRREA+ LRIQR
Sbjct: 733  EVLGRSASIIQRKVRSYLSRRSFITLRRSAIQIQSACRGQIARHVYENMRREAASLRIQR 792

Query: 119  DLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYM 178
            DLRMY+A+KAYKD+C+SA+ IQTGMRGMAAR++LRFRRQTRA+I+IQS CRKYLARLHY 
Sbjct: 793  DLRMYIARKAYKDLCYSAISIQTGMRGMAARDDLRFRRQTRAAIMIQSQCRKYLARLHYK 852

Query: 179  KLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMR 238
            KLKKAAITTQCAWRG+VAR+ELR LKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMR
Sbjct: 853  KLKKAAITTQCAWRGRVARKELRNLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMR 912

Query: 239  VDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVV 298
             D+EEAKTQENAKLQSALQEMQLQFKE+KE L+KE E A K  EKVPV+QEVPV+DH  +
Sbjct: 913  ADVEEAKTQENAKLQSALQEMQLQFKETKEMLVKEREAAIKVTEKVPVIQEVPVVDHVAL 972

Query: 299  EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE 358
            E+LT ENEKLK LV+SLEKKIDETEKKFEETS+ISEERLKQALEAESKIV+LKTAMHRLE
Sbjct: 973  EKLTIENEKLKALVTSLEKKIDETEKKFEETSRISEERLKQALEAESKIVELKTAMHRLE 1032

Query: 359  EKVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVK 418
            EK SD+ETENQ+LRQQ LL TP KK+SE    P TQSLENGHH+ +EN +NEPQSATPVK
Sbjct: 1033 EKFSDIETENQVLRQQGLLQTPAKKLSERPPIPPTQSLENGHHLNDENKANEPQSATPVK 1092

Query: 419  KLGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAER 478
              GTESDSK RRSHIE QHEN+DALI+CV  N+G+ +GKPVAA TIY+CLLHWKSFEAER
Sbjct: 1093 TYGTESDSKFRRSHIERQHENIDALISCVTNNIGFSHGKPVAALTIYRCLLHWKSFEAER 1152

Query: 479  TSVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTAT 538
            TSVFDRLIQMIGSAIENE++N+HMAYWLSNTSTLLFLLQRS+KAAGAS ATP +KPP+AT
Sbjct: 1153 TSVFDRLIQMIGSAIENEENNEHMAYWLSNTSTLLFLLQRSIKAAGAS-ATPQRKPPSAT 1211

Query: 539  SLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLK 598
            SLFGRM MGFRSSPSS+NLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLK
Sbjct: 1212 SLFGRMTMGFRSSPSSSNLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLK 1271

Query: 599  KELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVL 658
            KEL+SLLSLCIQAPRTSKGSVLRSGRSFGKDS  SHWQSI+DSLNTLLSTLKQNFVPPVL
Sbjct: 1272 KELASLLSLCIQAPRTSKGSVLRSGRSFGKDSPLSHWQSIVDSLNTLLSTLKQNFVPPVL 1331

Query: 659  VQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDE 718
            +QKI+TQTFSYINVQLFNSLLLRRECCTFSNGEYVK+GLAELELW  QAKEEYAGSSWDE
Sbjct: 1332 IQKIYTQTFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWSAQAKEEYAGSSWDE 1391

Query: 719  LKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVIS 778
            LKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSP VIS
Sbjct: 1392 LKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPGVIS 1451

Query: 779  SMRILMTEDSNDATSNSFLLDDNSSIPFSVDDLSNSLQEKDFLDVKAAEELLENPAFEFL 838
            SMR+LMTEDSN A SNSFLLDDNS IPFSVDDLSNSLQEKDF+DV+ AEELLENPAF+FL
Sbjct: 1452 SMRVLMTEDSNSAVSNSFLLDDNSGIPFSVDDLSNSLQEKDFMDVQPAEELLENPAFQFL 1511

Query: 839  YE 840
            +E
Sbjct: 1512 HE 1513

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437918|ref|XP_002268099.1| PREDICTED: myosin-H heavy chain [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744256|emb|CBI37226.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356545924|ref|XP_003541383.1| PREDICTED: myosin-J heavy chain-like [Glycine max] Back     alignment and taxonomy information
>gi|356536864|ref|XP_003536953.1| PREDICTED: myosin-J heavy chain-like [Glycine max] Back     alignment and taxonomy information
>gi|116047943|gb|ABJ53197.1| myosin XI-2 [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|29170491|dbj|BAC66162.1| myosin XI [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|13384201|gb|AAK21311.1| myosin subfamily XI heavy chain [Petroselinum crispum] Back     alignment and taxonomy information
>gi|356505090|ref|XP_003521325.1| PREDICTED: myosin-Va-like [Glycine max] Back     alignment and taxonomy information
>gi|2444178|gb|AAB71528.1| unconventional myosin [Helianthus annuus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query841
TAIR|locus:20202701500 XIB "myosin XI B" [Arabidopsis 0.976 0.547 0.669 4.6e-295
TAIR|locus:21177681516 XIH [Arabidopsis thaliana (tax 0.965 0.535 0.660 2.2e-288
TAIR|locus:20390071493 XIG "myosin-like protein XIG" 0.711 0.400 0.579 6.3e-258
TAIR|locus:21994491529 XIE [Arabidopsis thaliana (tax 0.995 0.547 0.511 2e-223
TAIR|locus:20255351538 XIC [Arabidopsis thaliana (tax 0.995 0.544 0.504 4.7e-222
TAIR|locus:21499321545 XIK [Arabidopsis thaliana (tax 0.982 0.534 0.510 3.3e-221
TAIR|locus:20079381520 MYA1 "myosin 1" [Arabidopsis t 0.964 0.533 0.482 7.3e-201
TAIR|locus:21259291522 XI-I [Arabidopsis thaliana (ta 0.932 0.515 0.430 5.8e-169
TAIR|locus:2046570 1770 XID "myosin XI D" [Arabidopsis 0.473 0.224 0.482 1.6e-152
TAIR|locus:21977731730 XIA "myosin XI A" [Arabidopsis 0.563 0.273 0.411 1.3e-151
TAIR|locus:2020270 XIB "myosin XI B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2833 (1002.3 bits), Expect = 4.6e-295, P = 4.6e-295
 Identities = 562/840 (66%), Positives = 659/840 (78%)

Query:     6 NNFLTVYGIIV------SSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTE 59
             + FL  +GII       +S+E  ACK+LL+K GLEGYQIGK+KVFLRAGQMADLD RRTE
Sbjct:   674 DEFLNRFGIIAPQVLDKNSNEPAACKKLLDKAGLEGYQIGKSKVFLRAGQMADLDTRRTE 733

Query:    60 VLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRD 119
             +LGRSASIIQRKVRSYL++K +I LR SA  IQA CRG LAR++YE MRREA+ L+IQRD
Sbjct:   734 ILGRSASIIQRKVRSYLAQKTFIQLRISATQIQAVCRGYLARSIYEGMRREAAALKIQRD 793

Query:   120 LRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMK 179
             LR +LA+KAY ++  + + IQ GMRGM +R EL  RRQT+A+ +IQ+ CR YLARLHY K
Sbjct:   794 LRKFLARKAYTELFSATILIQAGMRGMVSRKELCLRRQTKAATIIQTRCRVYLARLHYRK 853

Query:   180 LKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRV 239
             LKKAAITTQCAWRGKVAR+EL+ LKMAARETGALQ AKNKLEKQVEELTWRLQLEKRMR 
Sbjct:   854 LKKAAITTQCAWRGKVARKELKNLKMAARETGALQEAKNKLEKQVEELTWRLQLEKRMRT 913

Query:   240 DMEEAKTQENAKLQSALQEMQLQFKESKEKLMXXXXXXXXXXXXXXXXXXXXXXDHAVVE 299
             D+EEAK QENAK +S+L+E+Q +FKE++  L+                      D  ++E
Sbjct:   914 DLEEAKKQENAKYESSLEEIQNKFKETEALLIKEREAAKTVSEVLPIIKEVPVVDQELME 973

Query:   300 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 359
             +LT+ENEKLK +VSSLE KIDET K+  ET++IS++RLKQAL AESK+ +LKTAM RLEE
Sbjct:   974 KLTNENEKLKGMVSSLEIKIDETAKELHETARISQDRLKQALAAESKVAKLKTAMQRLEE 1033

Query:   360 KVSDMETENQILRQQSLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKK 419
             K+SDMETE QI+ QQ++L+TP+K ++ H      ++LENGH    EN  NE         
Sbjct:  1034 KISDMETEKQIMLQQTILNTPVKSVAGHPPTATIKNLENGHRTNLENQFNE--------- 1084

Query:   420 LGTESDSKLRRSHIEHQHENVDALINCVAKNLGYCNGKPVAAFTIYKCLLHWKSFEAERT 479
                E +    +S  E Q ENVD LI+CV +N+G+ NGKP+AAFTIYKCLLHWK FE+E+T
Sbjct:  1085 --VEVNGNAGKSAAERQLENVDTLIDCVKENIGFSNGKPIAAFTIYKCLLHWKCFESEKT 1142

Query:   480 SVFDRLIQMIGSAIENEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATS 539
             S FDRLI+MIGSAIENEDDN H+AYWL+NTS LLFLLQ+SLK AGA GAT  KKPP  TS
Sbjct:  1143 SAFDRLIEMIGSAIENEDDNGHLAYWLTNTSALLFLLQKSLKPAGA-GATASKKPPITTS 1201

Query:   540 LFGRMAMGFRXXXXXXXXXXXXXXXVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKK 599
             LFGRMA+ FR               V+R VEAKYPALLFKQQLAAYVEKI+G+IRDNLKK
Sbjct:  1202 LFGRMALSFRSSPNLAAAAEAAALAVIRPVEAKYPALLFKQQLAAYVEKIFGMIRDNLKK 1261

Query:   600 EXXXXXXXCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLV 659
             E       CIQAPR SKG + RS RS GKDS + HWQSIID LN+LL+ LK N+VP VL+
Sbjct:  1262 ELSALISMCIQAPRISKGGIQRSARSLGKDSPAIHWQSIIDGLNSLLAILKDNYVPLVLI 1321

Query:   660 QKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDEL 719
             QKI TQTFS++NVQLFNSLLLR+ECCTFSNGE+VK+GLAELELWC Q  E YAG SWDEL
Sbjct:  1322 QKIHTQTFSFVNVQLFNSLLLRKECCTFSNGEFVKSGLAELELWCGQVNE-YAGPSWDEL 1380

Query:   720 KHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPNVISS 779
             KHIRQAVGFLVIHQKYR+SYD+I +DLCPILSVQQLYRICTLYWDD YNTRSVS  VISS
Sbjct:  1381 KHIRQAVGFLVIHQKYRVSYDDIVHDLCPILSVQQLYRICTLYWDDCYNTRSVSQEVISS 1440

Query:   780 MRILMTEDSNDATSNSFLLDDNSSIPFSVDDLSNSLQEKDFLDVKAAEELLENPAFEFLY 839
             MR LMTE+SNDA SNSFLLDDNSSIPFS+D++SNS+ EKDF  VK A+ELLENP F FL+
Sbjct:  1441 MRALMTEESNDADSNSFLLDDNSSIPFSIDEISNSMHEKDFASVKPAKELLENPEFVFLH 1500
GO:0003774 "motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0016459 "myosin complex" evidence=IEA
GO:0030048 "actin filament-based movement" evidence=RCA;TAS
GO:0048767 "root hair elongation" evidence=IGI
GO:0051645 "Golgi localization" evidence=RCA
GO:0051646 "mitochondrion localization" evidence=RCA
GO:0060151 "peroxisome localization" evidence=RCA
TAIR|locus:2117768 XIH [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039007 XIG "myosin-like protein XIG" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199449 XIE [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025535 XIC [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149932 XIK [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007938 MYA1 "myosin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125929 XI-I [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046570 XID "myosin XI D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197773 XIA "myosin XI A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query841
pfam01843105 pfam01843, DIL, DIL domain 6e-43
COG50221463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 1e-24
cd01384674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 1e-18
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-08
smart00242677 smart00242, MYSc, Myosin 3e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-05
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 3e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-05
cd01380691 cd01380, MYSc_type_V, Myosin motor domain, type V 8e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-05
cd00124679 cd00124, MYSc, Myosin motor domain 2e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
pfam01576859 pfam01576, Myosin_tail_1, Myosin tail 3e-04
cd01377693 cd01377, MYSc_type_II, Myosin motor domain, type I 3e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
COG1340294 COG1340, COG1340, Uncharacterized archaeal coiled- 4e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
cd01379653 cd01379, MYSc_type_III, Myosin motor domain, type 6e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 7e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 8e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 8e-04
TIGR01069771 TIGR01069, mutS2, MutS2 family protein 0.001
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.001
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.003
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.003
pfam05262489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 0.003
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.003
pfam09731493 pfam09731, Mitofilin, Mitochondrial inner membrane 0.003
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.004
pfam07926132 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein 0.004
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 0.004
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.004
>gnl|CDD|216736 pfam01843, DIL, DIL domain Back     alignment and domain information 
 Score =  150 bits (382), Expect = 6e-43
 Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 3/108 (2%)

Query: 661 KIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELK 720
           ++F+Q F +IN QLFNSLLLRR+ C++S G  ++  L+ LE WC  A  E A   W+ L+
Sbjct: 1   QLFSQLFYFINAQLFNSLLLRRDFCSWSRGLQIRYNLSLLEDWCRSAGLEEAA--WEHLE 58

Query: 721 HIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYN 768
            +RQAV  L I +K  I   EI  DLCP L+  Q++++ TLY  D+Y 
Sbjct: 59  PLRQAVNLLQI-KKSTIEDIEILCDLCPALNPAQIHKLLTLYKPDDYE 105

The DIL domain has no known function. Length = 105
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 841
COG50221463 Myosin heavy chain [Cytoskeleton] 100.0
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 99.97
PF01843105 DIL: DIL domain; InterPro: IPR018444 Dilute encode 99.96
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 99.93
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 99.86
PTZ00014821 myosin-A; Provisional 99.67
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 99.65
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 99.47
KOG01621106 consensus Myosin class I heavy chain [Cytoskeleton 99.14
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.96
cd01384674 MYSc_type_XI Myosin motor domain, plant-specific t 98.8
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 98.59
KOG0520975 consensus Uncharacterized conserved protein, conta 98.39
COG50221463 Myosin heavy chain [Cytoskeleton] 98.29
cd01385692 MYSc_type_IX Myosin motor domain, type IX myosins. 98.22
KOG0520975 consensus Uncharacterized conserved protein, conta 98.17
KOG10291118 consensus Endocytic adaptor protein intersectin [S 97.43
KOG2128 1401 consensus Ras GTPase-activating protein family - I 97.3
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.24
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.17
PRK11637428 AmiB activator; Provisional 97.16
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.13
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.0
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 96.98
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 96.85
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.71
KOG21281401 consensus Ras GTPase-activating protein family - I 96.66
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.62
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 96.61
PRK04863 1486 mukB cell division protein MukB; Provisional 96.61
KOG09961293 consensus Structural maintenance of chromosome pro 96.58
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.55
PRK11637428 AmiB activator; Provisional 96.49
KOG09331174 consensus Structural maintenance of chromosome pro 96.21
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 96.11
KOG09331174 consensus Structural maintenance of chromosome pro 96.1
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.08
smart0001526 IQ Short calmodulin-binding motif containing conse 96.02
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.94
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.9
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.89
PRK09039343 hypothetical protein; Validated 95.86
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 95.85
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 95.83
PRK02224880 chromosome segregation protein; Provisional 95.76
PF14662193 CCDC155: Coiled-coil region of CCDC155 95.75
PF04091311 Sec15: Exocyst complex subunit Sec15-like ; InterP 95.75
KOG10291118 consensus Endocytic adaptor protein intersectin [S 95.6
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 95.6
PTZ00014821 myosin-A; Provisional 95.6
COG4942420 Membrane-bound metallopeptidase [Cell division and 95.58
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.54
KOG1103561 consensus Predicted coiled-coil protein [Function 95.48
smart0001526 IQ Short calmodulin-binding motif containing conse 95.47
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.4
PRK03918880 chromosome segregation protein; Provisional 95.33
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 94.97
PRK09039343 hypothetical protein; Validated 94.92
PRK03918880 chromosome segregation protein; Provisional 94.87
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 94.83
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 94.81
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 94.79
COG3883265 Uncharacterized protein conserved in bacteria [Fun 94.78
PHA02562562 46 endonuclease subunit; Provisional 94.7
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 94.69
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 94.65
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 94.54
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 94.47
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 94.43
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 94.25
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 94.23
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.18
PF00038312 Filament: Intermediate filament protein; InterPro: 94.13
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 94.1
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 94.01
COG4372499 Uncharacterized protein conserved in bacteria with 93.99
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 93.92
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 93.86
TIGR006061311 rad50 rad50. This family is based on the phylogeno 93.82
KOG42291062 consensus Myosin VII, myosin IXB and related myosi 93.7
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 93.68
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 93.62
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 93.38
PF13851201 GAS: Growth-arrest specific micro-tubule binding 93.36
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 93.36
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 93.26
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 93.19
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 93.18
PF00038312 Filament: Intermediate filament protein; InterPro: 93.1
PRK02224880 chromosome segregation protein; Provisional 93.08
PF04437494 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00 93.08
KOG0999772 consensus Microtubule-associated protein Bicaudal- 93.04
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 92.92
PRK01156895 chromosome segregation protein; Provisional 92.8
PHA02562562 46 endonuclease subunit; Provisional 92.79
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 92.75
PRK04778569 septation ring formation regulator EzrA; Provision 92.53
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 92.49
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 92.36
PF14662193 CCDC155: Coiled-coil region of CCDC155 92.29
PF05701522 WEMBL: Weak chloroplast movement under blue light; 92.09
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 92.09
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 91.91
PF10174775 Cast: RIM-binding protein of the cytomatrix active 91.83
PF15066527 CAGE1: Cancer-associated gene protein 1 family 91.67
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 91.59
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 91.47
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 91.4
PRK10884206 SH3 domain-containing protein; Provisional 91.38
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 91.27
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 91.26
KOG2991330 consensus Splicing regulator [RNA processing and m 91.21
KOG0977546 consensus Nuclear envelope protein lamin, intermed 91.12
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 91.12
PRK04778569 septation ring formation regulator EzrA; Provision 91.07
KOG1003205 consensus Actin filament-coating protein tropomyos 90.82
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 90.78
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 90.57
PF15397258 DUF4618: Domain of unknown function (DUF4618) 90.16
PRK04863 1486 mukB cell division protein MukB; Provisional 90.15
COG4026290 Uncharacterized protein containing TOPRIM domain, 90.12
PRK01156895 chromosome segregation protein; Provisional 89.93
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 89.89
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 89.7
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 89.69
PF0882661 DMPK_coil: DMPK coiled coil domain like; InterPro: 89.47
COG4372499 Uncharacterized protein conserved in bacteria with 89.42
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 89.39
PRK10884206 SH3 domain-containing protein; Provisional 89.36
TIGR026801353 conserved hypothetical protein TIGR02680. Members 89.29
KOG0249916 consensus LAR-interacting protein and related prot 89.21
COG5185622 HEC1 Protein involved in chromosome segregation, i 88.92
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 88.85
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 88.83
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 88.76
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 88.66
PF05701522 WEMBL: Weak chloroplast movement under blue light; 88.53
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 88.34
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 88.33
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 88.13
KOG1899861 consensus LAR transmembrane tyrosine phosphatase-i 88.07
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 87.94
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 87.67
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 87.41
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 87.07
KOG0964 1200 consensus Structural maintenance of chromosome pro 87.0
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 86.96
COG2433652 Uncharacterized conserved protein [Function unknow 86.62
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 86.1
PF05010207 TACC: Transforming acidic coiled-coil-containing p 85.66
COG2433652 Uncharacterized conserved protein [Function unknow 85.12
KOG4673961 consensus Transcription factor TMF, TATA element m 85.12
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 85.0
KOG0964 1200 consensus Structural maintenance of chromosome pro 84.99
KOG09791072 consensus Structural maintenance of chromosome pro 84.97
KOG0979 1072 consensus Structural maintenance of chromosome pro 84.95
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 84.79
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 84.74
PF09304107 Cortex-I_coil: Cortexillin I, coiled coil; InterPr 84.71
PF10205102 KLRAQ: Predicted coiled-coil domain-containing pro 84.57
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 84.51
PF13870177 DUF4201: Domain of unknown function (DUF4201) 84.43
KOG1962216 consensus B-cell receptor-associated protein and r 84.41
KOG0996 1293 consensus Structural maintenance of chromosome pro 84.41
PF10186302 Atg14: UV radiation resistance protein and autopha 84.4
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 84.35
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 84.27
COG5185622 HEC1 Protein involved in chromosome segregation, i 83.69
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 83.62
cd01378674 MYSc_type_I Myosin motor domain, type I myosins. M 83.6
COG4026290 Uncharacterized protein containing TOPRIM domain, 83.27
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 83.14
PRK10929 1109 putative mechanosensitive channel protein; Provisi 83.11
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 83.08
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 83.03
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 83.0
PRK10698222 phage shock protein PspA; Provisional 82.87
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 81.83
PLN02939977 transferase, transferring glycosyl groups 81.68
KOG1103561 consensus Predicted coiled-coil protein [Function 81.58
TIGR02977219 phageshock_pspA phage shock protein A. Members of 81.27
KOG0249 916 consensus LAR-interacting protein and related prot 81.25
COG11961163 Smc Chromosome segregation ATPases [Cell division 80.91
KOG0963629 consensus Transcription factor/CCAAT displacement 80.72
PF13514 1111 AAA_27: AAA domain 80.25
KOG0999772 consensus Microtubule-associated protein Bicaudal- 80.12
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 80.08
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 80.07
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-43  Score=414.85  Aligned_cols=702  Identities=20%  Similarity=0.247  Sum_probs=439.3

Q ss_pred             ccchHHHHHhhccccC-----------CChHHHHHHHHHHhCCC--CeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHH
Q 003183            2 FFLLNNFLTVYGIIVS-----------SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASII   68 (841)
Q Consensus         2 R~~f~eF~~RY~~L~~-----------~d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~I   68 (841)
                      ||+|+||++||++|++           .|.+.+|+.||..+.+|  .||+|+||||||+|+++.||++|...++.+++.|
T Consensus       672 R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~i  751 (1463)
T COG5022         672 RWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRI  751 (1463)
T ss_pred             hhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999993           25799999999998776  6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHH
Q 003183           69 QRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ-TGMRGMA  147 (841)
Q Consensus        69 Q~~~R~~~~Rk~~~~~r~aai~IQ~~~Rg~laR~~~~~~r~~~Aa~~IQ~~~R~~~~r~~~~~~r~aai~iQ-s~~Rg~~  147 (841)
                      |+.|||++.|++|.+..+.+..+|...+|+..|+.+..--...+++.+|..||....|+.|...-..+..+| ..+|+..
T Consensus       752 q~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~  831 (1463)
T COG5022         752 QRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKK  831 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999877776667899999999999999999999999999999 7777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003183          148 ARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEEL  227 (841)
Q Consensus       148 aR~~~~~~~~~~aA~~IQ~~~R~~~~r~~~~~~~~a~~~iQ~~~R~~~aRr~l~~lk~~a~~~~~l~~~~~~le~kv~el  227 (841)
                      .+.........++++.+|+.||.+..+++|..+.+.++.+|+.+|...|++++..++.+.+++.++.....+|+.++.++
T Consensus       832 ~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el  911 (1463)
T COG5022         832 LRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIEL  911 (1463)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHH
Confidence            77767777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Q 003183          228 TWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEK  307 (841)
Q Consensus       228 ~~~l~~e~~~~~~le~~~~~e~~~L~~~l~~l~~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~~  307 (841)
                      ...++..........   .+..+.|+.-+...+  ++.   ....+..                  ....+..+..+..+
T Consensus       912 ~~~~~s~~~~~~~~k---~e~~a~lk~~l~~~d--~~~---~~~~~~~------------------~~~~~~~l~~~~~~  965 (1463)
T COG5022         912 KKSLSSDLIENLEFK---TELIARLKKLLNNID--LEE---GPSIEYV------------------KLPELNKLHEVESK  965 (1463)
T ss_pred             hhccchhhhhhhHHH---HHHHHHHHHHhhccc--ccc---hhHHHHH------------------hhHHHHHHHHHHHH
Confidence            876663211111110   011112211111100  000   0000000                  01122333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccCcc
Q 003183          308 LKTLVSSLEKKIDETEKKFEETSKISEERLKQ---ALEAESKIVQLKTAMHRLEEK---VSDMETENQILRQQSLLSTPI  381 (841)
Q Consensus       308 L~~~l~~l~~~~~e~e~~~~e~~~~~~~~~~~---l~~~e~~~~~L~~e~~~Le~~---l~~le~E~~~l~~~~~~~~~~  381 (841)
                      |+....+....+...+....+.....+++..-   +.........++.....+++.   +..+....+....     .++
T Consensus       966 l~~~~~~~~~~~k~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s-----~~~ 1040 (1463)
T COG5022         966 LKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISS-----EST 1040 (1463)
T ss_pred             HHHHHHHHHHHHHHhhHHHHhcccHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhcc-----chh
Confidence            33333333222222222222222211111100   000000001111111111111   2222222221100     000


Q ss_pred             cccccccCCccccccCC-CCcccccccCCCCCCCCCccccCCCcchhhhhchhhhhhccHHHHHHHhHh-cCCCc-CCCc
Q 003183          382 KKMSEHISAPATQSLEN-GHHVIEENISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVAK-NLGYC-NGKP  458 (841)
Q Consensus       382 ~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~~~~ll~~l~~-~~~~~-~~~p  458 (841)
                      .  ...+. +. ....+ ..+...+......  .....+  +.   ...-....+..+....+++.+.. |+.+. ...+
T Consensus      1041 ~--~~~~~-~~-~~~~~~~~~~~~~l~~~~~--~l~~~r--~~---~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~ 1109 (1463)
T COG5022        1041 E--LSILK-PL-QKLKGLLLLENNQLQARYK--ALKLRR--EN---SLLDDKQLYQLESTENLLKTINVKDLEVTNRNLV 1109 (1463)
T ss_pred             h--hhccC-cc-cchhhhhhHHHHHhhhhHh--hhhhcC--cc---cchhHHHHHHHHhhhhhhhhhccchhhhhccccc
Confidence            0  00000 00 00000 0000000000000  000000  00   00000112334445555554433 22221 1122


Q ss_pred             chHHH-HHHHHhhccc-chhhhhhHHHHHHHHHHHHHhcc---CCCcchhHHHhhHHHHHHHHHHhhhhcCCCCCCCCCC
Q 003183          459 VAAFT-IYKCLLHWKS-FEAERTSVFDRLIQMIGSAIENE---DDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKK  533 (841)
Q Consensus       459 ~pA~i-l~~c~~~~~~-~~~e~~~ll~~ii~~I~~~i~~~---~d~~~l~fWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~  533 (841)
                      .||.. .+...-+|++ ...+...++...+..+..+....   +-...+.||.+|...+++.-       ......+.+.
T Consensus      1110 ~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~~ 1182 (1463)
T COG5022        1110 KPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPP-------PFAALSEKRL 1182 (1463)
T ss_pred             chhhHHHHHHHHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCC-------chhhcchhhh
Confidence            24544 4444457765 32333446666566665554432   33445789999998876310       0000000000


Q ss_pred             CCCccchhhhhhccCCCCcchhhhhhhHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 003183          534 PPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPR  613 (841)
Q Consensus       534 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~q~L~~~~~~iy~~l~~~~~~~l~~~L~~~i~~p~  613 (841)
                            .+..+- .+.+.    .    + ...+..         .+..+..+..++|+.|....  ++++.+...+-...
T Consensus      1183 ------~~~~~~-d~~~~----~----s-~s~v~~---------l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~ 1235 (1463)
T COG5022        1183 ------YQSALY-DEKSK----L----S-SSEVND---------LKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTE 1235 (1463)
T ss_pred             ------hHhhhh-ccccc----c----c-HHHHHH---------HHHHHHHHHHhccccchhhh--hhhhhhhhccchhh
Confidence                  000000 00110    0    0 111111         33556667778888886654  33333321110000


Q ss_pred             CCC--CCccCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccCCcCCcchhh
Q 003183          614 TSK--GSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGE  691 (841)
Q Consensus       614 ~~~--~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r~~~cs~s~G~  691 (841)
                      .+.  ++... +......+...+.++++.+++.+.++++.+.+.+.+....++++..++|+.+||.|..+....+|+.|.
T Consensus      1236 ~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~ 1314 (1463)
T COG5022        1236 YSTSLKGFNN-LNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSAT 1314 (1463)
T ss_pred             hccccccccc-hhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcc
Confidence            011  11100 011122445678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchHHHHHHHhhcccccccCcHHHhHHHHHHHHHHhccccccccHHHHHhccCCCCCHHHHHHHHhcCCCCCCCCCC
Q 003183          692 YVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRS  771 (841)
Q Consensus       692 qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y~~d~~e~~~  771 (841)
                      ++.+|.+.+.+||+.+|.   ..+..+|++++||++.+++.+++..+.+++ .+.|.+|+|.|+.+|+..|.|.++++ +
T Consensus      1315 ~~~~n~~~~~~w~~~~~i---~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e~-~ 1389 (1463)
T COG5022        1315 EVNYNSEELDDWCREFEI---SDVDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKEN-N 1389 (1463)
T ss_pred             cccccchhhhHHHHhhcc---cchHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhcccC-C
Confidence            999999999999999983   455689999999999999996555555556 49999999999999999999999985 9


Q ss_pred             CCHHHHHHHHhhhh
Q 003183          772 VSPNVISSMRILMT  785 (841)
Q Consensus       772 v~~~~i~~v~~~~~  785 (841)
                      +|.++..+|.+...
T Consensus      1390 l~ke~~~~~~a~~~ 1403 (1463)
T COG5022        1390 LPKEILKKIEALLI 1403 (1463)
T ss_pred             ChHHHHHHHhhhhh
Confidence            99999966655544

>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) Back     alignment and domain information
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query841
2dfs_A1080 3-D Structure Of Myosin-V Inhibited State Length = 7e-36
1oe9_A795 Crystal Structure Of Myosin V Motor With Essential 2e-09
2os8_A840 Rigor-Like Structures Of Muscle Myosins Reveal Key 1e-04
2ec6_A838 Placopecten Striated Muscle Myosin Ii Length = 838 1e-04
1qvi_A840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 1e-04
1dfl_A831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 1e-04
1b7t_A835 Myosin Digested By Papain Length = 835 1e-04
1dfk_A830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 1e-04
1kk7_A837 Scallop Myosin In The Near Rigor Conformation Lengt 1e-04
3i5g_A839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 4e-04
1w8j_A766 Crystal Structure Of Myosin V Motor Domain - Nucleo 5e-04
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure 
Iteration: 1

 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 155/275 (56%), Gaps = 16/275 (5%)
Query: 8   FLTVYGII-----VSSDEVTACKRLLEKVGLEG--YQIGKTKVFLRAGQMADLDARRTEV 60
           F + Y ++     V SD    CK +LEK+ L+   YQ GKTK+F RAGQ+A L+  R + 
Sbjct: 707 FFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADK 766
Query: 61  LGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDL 120
           L  +   IQ+ +R +L RK Y+ +RR+AI IQ   RG  AR     +RR  + + IQ+  
Sbjct: 767 LRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQ 826
Query: 121 RMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKL 180
           RMY+ +K Y+ M  + + +Q  +RG   RN+ +   +   SI+IQ H R +LAR+HY + 
Sbjct: 827 RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT 886
Query: 181 KKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQ-------- 232
            KA +  QC +R  +A+REL+KLK+ AR     +     LE ++ +L  ++         
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
Query: 233 LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESK 267
           L ++M  ++E   + E  KL+S ++ +++  +E+K
Sbjct: 947 LLEKMN-NLEITYSTETEKLRSDVERLRMSEEEAK 980
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query841
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-89
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-74
2f6h_X419 Myosin-2, type V myosin; mysoin V, cargo binding, 2e-65
3mmi_A386 Myosin-4; globular tail, dilute domain, motor prot 9e-64
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 3e-51
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 1e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-49
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 4e-25
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 5e-08
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 2e-21
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-19
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 2e-15
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 8e-14
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 2e-13
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 2e-10
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 7e-15
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 7e-13
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 2e-09
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 1e-08
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-04
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 3e-05
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 7e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-04
1w1w_A430 Structural maintenance of chromosome 1; cohesin, c 2e-04
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 5e-04
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 6e-04
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
 Score =  303 bits (779), Expect = 4e-89
 Identities = 108/381 (28%), Positives = 193/381 (50%), Gaps = 21/381 (5%)

Query: 8    FLTVYGIIV-----SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEV 60
            F + Y +++      SD    CK +LEK+ L  + YQ GKTK+F RAGQ+A L+  R + 
Sbjct: 707  FFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADK 766

Query: 61   LGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDL 120
            L  +   IQ+ +R +L RK Y+ +RR+AI IQ   RG  AR     +RR  + + IQ+  
Sbjct: 767  LRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQ 826

Query: 121  RMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKL 180
            RMY+ +K Y+ M  + + +Q  +RG   RN+ +   +   SI+IQ H R +LAR+HY + 
Sbjct: 827  RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT 886

Query: 181  KKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVD 240
             KA +  QC +R  +A+REL+KLK+ AR     +     LE ++ +L  ++  + +    
Sbjct: 887  LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946

Query: 241  MEEAKT-------QENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI 293
            + E           E  KL+S ++ +++  +E+K    + + + ++ A+    + +    
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 294  DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTA 353
               + E       + + LVS L+++    + + EE ++   ++ K+  E   K       
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK------- 1059

Query: 354  MHRLEEKVSDMETENQILRQQ 374
                E K  +++  ++ LR Q
Sbjct: 1060 KLVEETKQLELDLNDERLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Length = 419 Back     alignment and structure
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae} Length = 386 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 63 Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Length = 64 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query841
2f6h_X419 Myosin-2, type V myosin; mysoin V, cargo binding, 100.0
3mmi_A386 Myosin-4; globular tail, dilute domain, motor prot 100.0
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 100.0
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 99.91
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 99.9
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 99.75
4anj_A1052 Unconventional myosin-VI, green fluorescent prote; 99.61
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 99.58
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.4
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 99.39
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 99.22
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 99.16
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 99.0
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 98.96
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.93
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.8
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 98.71
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 98.68
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 98.65
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 97.97
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 97.76
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 97.69
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 97.66
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 97.46
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 97.23
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.6
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 96.53
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 96.27
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 95.9
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 95.41
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.32
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.14
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 94.71
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 94.65
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 94.65
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.45
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 94.23
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 94.03
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 93.9
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 93.78
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 93.51
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 92.6
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 92.48
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 92.36
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 92.32
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 91.75
3bas_A89 Myosin heavy chain, striated muscle/general contro 91.17
2a2f_X325 Exocyst complex component SEC15; all helical struc 90.95
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 90.77
4anj_A1052 Unconventional myosin-VI, green fluorescent prote; 90.25
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 89.79
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 89.63
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 89.05
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 88.7
1x79_B112 RAB GTPase binding effector protein 1; rabaptin5, 87.94
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 87.64
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 86.12
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 85.99
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 85.48
2w83_C77 C-JUN-amino-terminal kinase-interacting protein 4; 85.39
1wt6_A81 Myotonin-protein kinase; coiled-coil, kinase activ 85.06
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 84.94
2e7s_A135 RAB guanine nucleotide exchange factor SEC2; coile 84.86
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 84.77
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 84.25
3cve_A72 Homer protein homolog 1; coiled coil, alternative 83.55
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 82.68
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 82.6
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 82.49
3cvf_A79 Homer-3, homer protein homolog 3; coiled coil, alt 80.99
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 80.77
2e7s_A135 RAB guanine nucleotide exchange factor SEC2; coile 80.63
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=9e-63  Score=552.74  Aligned_cols=328  Identities=16%  Similarity=0.271  Sum_probs=267.0

Q ss_pred             CcchHHHHHHHHh-hccc-chhhhhhHHHHHHHHHHHHHhcc--CC-CcchhHHHhhHHHHHHHH--HHhhhhcCCCCCC
Q 003183          457 KPVAAFTIYKCLL-HWKS-FEAERTSVFDRLIQMIGSAIENE--DD-NDHMAYWLSNTSTLLFLL--QRSLKAAGASGAT  529 (841)
Q Consensus       457 ~p~pA~il~~c~~-~~~~-~~~e~~~ll~~ii~~I~~~i~~~--~d-~~~l~fWLsN~~~Ll~~l--q~~~~~~~~~~~~  529 (841)
                      +.+|||+||+|++ ||+. +..+.+.+|++|+++|+.+++++  +| ++.++|||||+++|||||  +++....+.    
T Consensus        47 ~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~~~----  122 (419)
T 2f6h_X           47 VVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTEE----  122 (419)
T ss_dssp             HSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred             cchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhccC----
Confidence            3379999999999 9987 78888999999999999999876  34 588999999999999999  555433222    


Q ss_pred             CCCCCCCccchhhhhhccCCCCcchhhhhhhHHHHHHHHhhhchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003183          530 PHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYP--ALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSL  607 (841)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~--~~~~~q~L~~~~~~iy~~l~~~~~~~l~~~L~~  607 (841)
                      +  ++.+.           .           + +++ .    +||  +..|+++|..++.+||++|+++++++|.|++++
T Consensus       123 ~--~~~~~-----------~-----------~-~~~-~----~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~l~p  172 (419)
T 2f6h_X          123 T--FKNGM-----------T-----------D-EEY-K----EYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKKAIN  172 (419)
T ss_dssp             C------C-----------C-----------H-HHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--ccccc-----------c-----------h-hhH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  00000           1           0 121 1    222  567999999999999999999999999999999


Q ss_pred             hhcCCCCCCCC--c-cC--CCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhHhHHHHHhhhccC
Q 003183          608 CIQAPRTSKGS--V-LR--SGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRR  682 (841)
Q Consensus       608 ~i~~p~~~~~~--~-~~--~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~q~f~qlf~~in~~~fN~Ll~r~  682 (841)
                      ||+.+....+.  . ..  .++.+. .++.++|++|+++|++++++|+.|+|||.+++|+|+|+|||||+++||+||+|+
T Consensus       173 aIl~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~Il~~L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~  251 (419)
T 2f6h_X          173 AVVISESLPGFSAGETSGFLNKIFA-NTEEYTMDDILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKR  251 (419)
T ss_dssp             HHTTSCSSTTTTC----------------CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHhCccccccccccccccccccccc-CCCccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99776543210  0 00  012222 344679999999999999999999999999999999999999999999999999


Q ss_pred             CcCCcchhhHHhhchHHHHHHHhhcccccccCcHHHhHHHHHHHHHHhccccccccHHHHHhccCCCCCHHHHHHHHhcC
Q 003183          683 ECCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLY  762 (841)
Q Consensus       683 ~~cs~s~G~qIr~nls~Le~W~~~~~~~~~~~~~~~L~~l~Qa~~lLq~~kk~~~~~~~i~~~~C~~Ls~~Qi~kil~~Y  762 (841)
                      +||||++|+||||||+.||+||+++|+   ++++++|+||+||++|||++||+..|+++|+ ++||+|||+||+|||++|
T Consensus       252 ~~cs~s~G~qIr~nls~Le~W~~~~~l---~~a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~-~~C~~Ln~~Ql~~il~~Y  327 (419)
T 2f6h_X          252 NFLSWKRGLQLNYNVTRLEEWCKTHGL---TDGTECLQHLIQTAKLLQVRKYTIEDIDILR-GICYSLTPAQLQKLISQY  327 (419)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTTC---TTHHHHTHHHHHHHHHTTSCCSSHHHHHHHH-HHTTTSCHHHHHHHHHHC
T ss_pred             cccchhhHHHHHhhHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHhhCCCchhhHHHHH-HHhhcCCHHHHHHHHHhC
Confidence            999999999999999999999999995   4688999999999999999988877787876 999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHhhhhcCCCCC----------C-CCcccc--cCCCcccccccccccccccccccCCC--cch
Q 003183          763 WDDNYNTRSVSPNVISSMRILMTEDSNDA----------T-SNSFLL--DDNSSIPFSVDDLSNSLQEKDFLDVK--AAE  827 (841)
Q Consensus       763 ~~d~~e~~~v~~~~i~~v~~~~~~~~~~~----------~-~~~ll~--D~~~~~Pf~~~~~~~~~~~~~~~~~~--~p~  827 (841)
                      +||+|| ++||++||++|++++++++++.          . +++|+|  |.++.+||+.++.      -.+.+|+  ||+
T Consensus       328 ~~d~~e-~~v~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~d~~~~~Pf~~p~~------~~~~~i~~~iP~  400 (419)
T 2f6h_X          328 QVADYE-SPIPQEILRYVADIVKKEAALSSSGNDSKGHEHSSSIFITPETGPFTDPFSLIKT------RKFDQVEAYIPA  400 (419)
T ss_dssp             CCCTTS-CCCCHHHHHHHHHHHHHHHHGGGCC----------CCSCCCCCCCCCCGGGGSCC------CCCCCCCCCCCT
T ss_pred             CCccCC-CCCCHHHHHHHHHHHhcccccccccccccccccccccccccCCcccCCCcCCCCc------CcHHHHHhhCCC
Confidence            999997 5999999999999999876542          1 258999  5555599987764      2667777  999


Q ss_pred             hhh
Q 003183          828 ELL  830 (841)
Q Consensus       828 ~l~  830 (841)
                      .|+
T Consensus       401 ~l~  403 (419)
T 2f6h_X          401 WLS  403 (419)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            875
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2 Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens} Back     alignment and structure
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus} Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 841
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 5e-22
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 9e-08
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 3e-21
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 1e-07
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 0.004
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 6e-18
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 4e-04
d1br2a2710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 1e-08
d1d0xa2712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 3e-08
d1lkxa_684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 4e-06
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 99.4 bits (247), Expect = 5e-22
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 8   FLTVYGIIVSS--------DEVTACKRLLEKVGLEG--YQIGKTKVFLRAGQMADLDARR 57
           F   Y ++ +S        D   A ++LL    ++   Y  G TKVF +AG +  L+  R
Sbjct: 671 FKQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTKVFFKAGLLGLLEEMR 730

Query: 58  TEVLGRSASIIQRKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVYESMR 108
            + L    +  Q + R +L R  Y  +   R S   IQ   R  +    +  M+
Sbjct: 731 DDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPWMK 784
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query841
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 99.74
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 99.73
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 99.48
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 97.4
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 97.34
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 83.78
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 81.08
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 81.06
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 80.89
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=99.74  E-value=1.2e-18  Score=207.47  Aligned_cols=107  Identities=27%  Similarity=0.413  Sum_probs=94.2

Q ss_pred             CccchHHHHHhhccccC--------CChHHHHHHHHHHhCCC--CeeeeeeEEEcccccHHHHHHHHHHHHhhhHHHHHH
Q 003183            1 MFFLLNNFLTVYGIIVS--------SDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQR   70 (841)
Q Consensus         1 ~R~~f~eF~~RY~~L~~--------~d~~~~~~~iL~~~~~~--~yq~G~TKvF~rag~~a~Le~~R~~~l~~aa~~IQ~   70 (841)
                      +|++|.||+.||++|++        .|.+.+|+.||..++++  .||+|+||||||+|++..||+.|.+.+..+++.||+
T Consensus       664 ~R~~~~eF~~RY~~L~~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~r~~~l~~~~~~IQ~  743 (794)
T d2mysa2         664 SRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTKVFFKAGLLGLLEEMRDDKLAEIITATQA  743 (794)
T ss_dssp             CEEEHHHHHHHHGGGTTTC------CCTTHHHHHHTTSSSCCSSSEEEETTEEEECTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhCcccccccccCCHHHHHHHHHHhcCCCcccEEeCCCeEEeCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999983        47799999999998765  699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---hhhHHHHHHHHHhhhhhhhhhhh
Q 003183           71 KVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVYESM  107 (841)
Q Consensus        71 ~~R~~~~Rk~~~~~---r~aai~IQ~~~Rg~laR~~~~~~  107 (841)
                      +||||++|++|.++   +.|++.||+.||||++|+.+.++
T Consensus       744 ~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~~~  783 (794)
T d2mysa2         744 RCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPWM  783 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            99999999999776   56777777777777777665533
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure