Citrus Sinensis ID: 003184
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | 2.2.26 [Sep-21-2011] | |||||||
| Q6S001 | 685 | Kinesin-related protein 1 | yes | no | 0.360 | 0.442 | 0.414 | 2e-57 | |
| Q54NP8 | 1922 | Kinesin-related protein 4 | no | no | 0.297 | 0.130 | 0.442 | 6e-54 | |
| Q6RT24 | 2474 | Centromere-associated pro | yes | no | 0.334 | 0.113 | 0.424 | 1e-50 | |
| Q02224 | 2701 | Centromere-associated pro | yes | no | 0.343 | 0.106 | 0.419 | 2e-50 | |
| O15066 | 747 | Kinesin-like protein KIF3 | no | no | 0.299 | 0.337 | 0.410 | 6e-44 | |
| Q61771 | 747 | Kinesin-like protein KIF3 | no | no | 0.299 | 0.337 | 0.410 | 7e-44 | |
| P46871 | 742 | Kinesin-II 95 kDa subunit | no | no | 0.309 | 0.350 | 0.386 | 6e-43 | |
| P46869 | 786 | Kinesin-like protein FLA1 | N/A | no | 0.304 | 0.325 | 0.376 | 1e-42 | |
| Q9P2E2 | 1029 | Kinesin-like protein KIF1 | no | no | 0.299 | 0.244 | 0.398 | 5e-41 | |
| P46873 | 699 | Osmotic avoidance abnorma | yes | no | 0.299 | 0.360 | 0.392 | 6e-41 |
| >sp|Q6S001|KIF11_DICDI Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 200/316 (63%), Gaps = 13/316 (4%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPEKGVV 60
GI ++ DIF YI +ER F+L+ S +EIYNE + DLL + N L++ + P GV
Sbjct: 175 GIIPLSIQDIFTYIQECKEREFLLRVSYLEIYNETVNDLLGVNQENFNLKIHEHPVTGVY 234
Query: 61 VEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL---- 116
V + EEI+ H+ L+S EA R +G T N +SSRSH I +++IES +E L
Sbjct: 235 VAGLKEEIVLSVEHVLSLISAGEAHRHVGSTSYNLQSSRSHTIFKMIIES--KEVLPEGS 292
Query: 117 --GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN 174
G S +++N +DLAGSE+AS++ + R KEG +IN+SLLTL TVI KLS+
Sbjct: 293 GSGGLESPVRYSTLNLIDLAGSEKASESTISAIRNKEGSYINKSLLTLGTVISKLSEKDT 352
Query: 175 GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 234
G+I YRDSKLTR+LQ L GN+R AIICT++ A ++ E++ NTL FA AK+++ A+VN
Sbjct: 353 GYIPYRDSKLTRVLQNSLSGNSRVAIICTITLASNNFEESHNTLKFASRAKKISNNAKVN 412
Query: 235 VVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQI--QKMEREIRELTK 292
++ DKAL+K + E+A L+S+L S A ++ L K+ ++I Q++ ++ + K
Sbjct: 413 EILDDKALLKQYRNEIAELKSKL-SDALSTEKELQETLTEKEKMKITNQELLHKLVDAEK 471
Query: 293 QRDLAQSRVEDLLRMV 308
R L +S++ +L +++
Sbjct: 472 HRSLLESKINNLNKLI 487
|
Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P46869|FLA10_CHLRE Kinesin-like protein FLA10 OS=Chlamydomonas reinhardtii GN=FLA10 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9P2E2|KIF17_HUMAN Kinesin-like protein KIF17 OS=Homo sapiens GN=KIF17 PE=2 SV=3 | Back alignment and function description |
|---|
| >sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 OS=Caenorhabditis elegans GN=osm-3 PE=2 SV=4 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | ||||||
| 359474911 | 957 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.864 | 0.701 | 0.0 | |
| 147775817 | 969 | hypothetical protein VITISV_029516 [Viti | 0.984 | 0.854 | 0.692 | 0.0 | |
| 224105297 | 945 | predicted protein [Populus trichocarpa] | 0.934 | 0.831 | 0.637 | 0.0 | |
| 449461619 | 930 | PREDICTED: kinesin-like protein KIN12B-l | 0.948 | 0.858 | 0.621 | 0.0 | |
| 356544453 | 885 | PREDICTED: uncharacterized protein LOC10 | 0.889 | 0.845 | 0.594 | 0.0 | |
| 356541062 | 898 | PREDICTED: uncharacterized protein LOC10 | 0.907 | 0.849 | 0.589 | 0.0 | |
| 356509547 | 897 | PREDICTED: uncharacterized protein LOC10 | 0.897 | 0.841 | 0.568 | 0.0 | |
| 297735041 | 973 | unnamed protein product [Vitis vinifera] | 0.970 | 0.838 | 0.553 | 0.0 | |
| 359476842 | 960 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.845 | 0.555 | 0.0 | |
| 42569214 | 862 | ATP binding microtubule motor family pro | 0.868 | 0.846 | 0.558 | 0.0 |
| >gi|359474911|ref|XP_002275329.2| PREDICTED: uncharacterized protein LOC100250389 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1145 bits (2962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/852 (70%), Positives = 680/852 (79%), Gaps = 25/852 (2%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVV 60
M GITE TVADI+DYI HEERAFVLKFSAMEIYNEA+RDLLSTDN PLRLLDDPE+G +
Sbjct: 120 MIGITEYTVADIYDYIQNHEERAFVLKFSAMEIYNEAVRDLLSTDNLPLRLLDDPERGTI 179
Query: 61 VEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 120
VEK+TEE L+DW+HLK LLSICEAQR+IGET LNE SSRSHQI+RL IESSAREFLGK N
Sbjct: 180 VEKLTEETLRDWSHLKNLLSICEAQRQIGETSLNETSSRSHQILRLTIESSAREFLGKGN 239
Query: 121 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYR 180
STTL+ASVNFVDLAGSERASQA+S GARLKEGCHINRSLLTL TVIRKLSKGR GH+NYR
Sbjct: 240 STTLAASVNFVDLAGSERASQAMSAGARLKEGCHINRSLLTLGTVIRKLSKGRQGHVNYR 299
Query: 181 DSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDK 240
DSKLTR+LQP LGGNARTAIICTLSPARSHVEQ+RNTLLFA CAKEVTTKAQVNVVMSDK
Sbjct: 300 DSKLTRILQPSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTKAQVNVVMSDK 359
Query: 241 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSR 300
ALVKHLQKELARLESELRSPAPASSTCD+ ALLRKKDLQI KME+EIRELTK RD+A+SR
Sbjct: 360 ALVKHLQKELARLESELRSPAPASSTCDHTALLRKKDLQIDKMEKEIRELTKLRDIAESR 419
Query: 301 VEDLLRMVGCDQDSRQETGRNHNSHKQVSDIWEDEYSESEAS-GVADLHRMKNGVKKSNT 359
VEDLL+M+G DQ S Q TG ++ QV WED+ S SEA G D+ GV+ NT
Sbjct: 420 VEDLLQMIGNDQSSSQWTGIRNDPKSQVGIKWEDDCSVSEADPGCRDI-----GVRSFNT 474
Query: 360 TRFYDTESENNSEYLYH--PENNEDPTLSDCTSSPLPIGKKVVRSYSGKSLEENAGATTE 417
T++ S +N++ YH P+ +E + D SSP+ +G VR EE A E
Sbjct: 475 TQYSGRGSGSNTQEKYHQLPQYSEGHSPFDGPSSPISVGNGFVRPDPRCGQEEIALEAGE 534
Query: 418 DSDEYCREVQCIEMEGSSRFKNFESHALSNGENEGTLALTYEDGDVTGQEMISTPVNGDR 477
D D+ +EV+CIE+E SS+ KN +S S GENEG +A++ +GDVT E+IS P G+R
Sbjct: 535 DPDDLYKEVRCIEIEESSKHKNLKSLDTSTGENEG-MAVS-GNGDVTDGEIISAPTKGER 592
Query: 478 EERRIQNGFTYGALEQRLNNVQKTIESLVSPYPDAGESSLRSLAEDMSSSRSLSLARSRS 537
E IQNGFTYGALEQ++ +VQKTIESLVSPYPD E S +L D SSRSL+L RS S
Sbjct: 593 EVSHIQNGFTYGALEQKIQDVQKTIESLVSPYPD--EPSPWALDADTPSSRSLTLTRSWS 650
Query: 538 CRAKLMAGSSSPSLEKGEQIESTPPNGFEKNFPGRPEGFQKK--LFSYGTNTSSLSRNDS 595
CRA LM GSSSP EK EQ STPP+GFEK+FPGRPE F+++ +YG N LSR DS
Sbjct: 651 CRANLMTGSSSP-CEKVEQRLSTPPSGFEKDFPGRPESFRRRHPPLNYGANMPRLSRTDS 709
Query: 596 LSSLESASI------KTSADEDITSIQTFVAGLNKMAKNQETGLQADNSEKNVKDVGLDP 649
SS SA + KTSADEDITSIQTFVAGL +MAK QETG +AD EKNVKDVGLDP
Sbjct: 710 QSSFGSAFVDELKAEKTSADEDITSIQTFVAGLKEMAK-QETGTRADKLEKNVKDVGLDP 768
Query: 650 MHEALETPENWPVEFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRL 709
M E T +WP+EFERQ+RE+ +LWQTCNVSL+HRTYFFLLFRGDP DSIYM VEL+RL
Sbjct: 769 MQEG--TLPDWPLEFERQQREIIELWQTCNVSLIHRTYFFLLFRGDPMDSIYMEVELRRL 826
Query: 710 SFLKESFSQGNMAMQDGRVLSLASSERALRRERETLSKLMRRRLSADERNKLYQKWGIGL 769
SFLKE+FSQGN +++DGR L+ ASS RALRRERETLSKLM +R S ERN+L+QKWGI L
Sbjct: 827 SFLKETFSQGNQSLEDGRTLTQASSIRALRRERETLSKLMHKRFSEGERNRLFQKWGIKL 886
Query: 770 NSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTPLTTPRRR 829
+SKRRRLQLA LWSN+ DM+ + ESAAI+AKLI+FVEQG ALK MFGLSFTP T RRR
Sbjct: 887 DSKRRRLQLAQRLWSNTTDMSHVNESAAIVAKLIKFVEQGQALKEMFGLSFTPHRT-RRR 945
Query: 830 SLGWKHSMASLL 841
S GWKHSM SLL
Sbjct: 946 SYGWKHSMGSLL 957
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147775817|emb|CAN75924.1| hypothetical protein VITISV_029516 [Vitis vinifera] gi|297744725|emb|CBI37987.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224105297|ref|XP_002313758.1| predicted protein [Populus trichocarpa] gi|222850166|gb|EEE87713.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449461619|ref|XP_004148539.1| PREDICTED: kinesin-like protein KIN12B-like [Cucumis sativus] gi|449520157|ref|XP_004167100.1| PREDICTED: kinesin-like protein KIN12B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356544453|ref|XP_003540665.1| PREDICTED: uncharacterized protein LOC100820012 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356541062|ref|XP_003539002.1| PREDICTED: uncharacterized protein LOC100788096 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356509547|ref|XP_003523509.1| PREDICTED: uncharacterized protein LOC100799379 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297735041|emb|CBI17403.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359476842|ref|XP_003631897.1| PREDICTED: uncharacterized protein LOC100854194 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|42569214|ref|NP_179726.2| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|79322634|ref|NP_001031385.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|330252063|gb|AEC07157.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|330252064|gb|AEC07158.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 841 | ||||||
| TAIR|locus:2050115 | 862 | AT2G21300 [Arabidopsis thalian | 0.487 | 0.475 | 0.653 | 5.7e-202 | |
| TAIR|locus:2120272 | 836 | AT4G38950 [Arabidopsis thalian | 0.529 | 0.532 | 0.604 | 9e-193 | |
| TAIR|locus:2155051 | 1063 | AT5G66310 [Arabidopsis thalian | 0.524 | 0.414 | 0.529 | 7.9e-169 | |
| TAIR|locus:2135006 | 1004 | AT4G24170 [Arabidopsis thalian | 0.409 | 0.342 | 0.625 | 2.4e-142 | |
| TAIR|locus:2084701 | 938 | TES "TETRASPORE" [Arabidopsis | 0.359 | 0.321 | 0.605 | 2.4e-130 | |
| TAIR|locus:2014069 | 974 | HIK "HINKEL" [Arabidopsis thal | 0.365 | 0.315 | 0.572 | 1.7e-125 | |
| UNIPROTKB|Q8S950 | 959 | nack1 "Kinesin-like protein NA | 0.356 | 0.312 | 0.598 | 3.5e-125 | |
| TAIR|locus:2162351 | 1087 | AT5G42490 [Arabidopsis thalian | 0.199 | 0.154 | 0.639 | 1.9e-87 | |
| DICTYBASE|DDB_G0291039 | 685 | kif11 "kinesin-7" [Dictyosteli | 0.360 | 0.442 | 0.398 | 8.2e-52 | |
| UNIPROTKB|O42263 | 2954 | cenpe "Kinesin-related protein | 0.416 | 0.118 | 0.376 | 2.3e-47 |
| TAIR|locus:2050115 AT2G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1320 (469.7 bits), Expect = 5.7e-202, Sum P(2) = 5.7e-202
Identities = 275/421 (65%), Positives = 325/421 (77%)
Query: 1 MTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXX 60
M+GITE VADIFDYI +HE+RAFV+KFSA+EIYNEAIRDLLS D+TPLRL DDP
Sbjct: 120 MSGITEFAVADIFDYIFKHEDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDPEKGAA 179
Query: 61 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 120
L+DWNHLKEL+S+CEAQR+IGET LNE+SSRSHQII+L +ESSAREFLGKEN
Sbjct: 180 VEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKEN 239
Query: 121 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYR 180
STTL ASVNF+DLAGSERASQALS GARLKEGCHINRSLLTL TVIRKLS GR GHINYR
Sbjct: 240 STTLMASVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQGHINYR 299
Query: 181 DSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDK 240
DSKLTR+LQPCLGGNARTAI+CTLSPARSHVEQTRNTLLFACCAKEVTTKAQ+NVVMSDK
Sbjct: 300 DSKLTRILQPCLGGNARTAIVCTLSPARSHVEQTRNTLLFACCAKEVTTKAQINVVMSDK 359
Query: 241 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSR 300
ALVK LQ+ELARLESELR+PAPA+S+CD LRKKDLQIQKME+++ E+TKQRD+AQSR
Sbjct: 360 ALVKQLQRELARLESELRNPAPATSSCDCGVTLRKKDLQIQKMEKQLAEMTKQRDIAQSR 419
Query: 301 VEDLLRMVGCDQDSRQETGRNHNSHKQVSDIWEDEYSESEASGVADLHR---MKNGVKKS 357
+ED ++MV + D+ + G H ++ ++ WED S SE SGV D R + +G
Sbjct: 420 LEDFMKMV--EHDASSKAGTPHFRNR--TNKWEDG-SVSEISGVVDPDRTSFISDGTSTP 474
Query: 358 -NTTRFY-DTESENNSEYLYHPENNEDPTLSDCTSSPLPIGKKVVRSYSGKSLEENAGAT 415
+T R + + S+++ E P ++ D + C ++ R + S EE A
Sbjct: 475 LSTARAHVRSHSDDDLEEEMSPRHSGDQSEEYCKEVQCIEMEESTRDINNDS-EERTDAE 533
Query: 416 T 416
T
Sbjct: 534 T 534
|
|
| TAIR|locus:2120272 AT4G38950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2155051 AT5G66310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2135006 AT4G24170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2084701 TES "TETRASPORE" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014069 HIK "HINKEL" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8S950 nack1 "Kinesin-like protein NACK1" [Nicotiana tabacum (taxid:4097)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2162351 AT5G42490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0291039 kif11 "kinesin-7" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O42263 cenpe "Kinesin-related protein" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 841 | |||
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 1e-112 | |
| pfam11995 | 162 | pfam11995, DUF3490, Domain of unknown function (DU | 3e-86 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 2e-84 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 2e-82 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 7e-66 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 6e-60 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 2e-56 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 6e-55 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 2e-54 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 2e-54 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 5e-52 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 7e-50 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 8e-47 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 7e-45 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 2e-44 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 1e-39 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 5e-39 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 5e-37 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 5e-30 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 2e-27 |
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
Score = 345 bits (886), Expect = e-112
Identities = 129/226 (57%), Positives = 156/226 (69%), Gaps = 4/226 (1%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVE 62
GI V DIF I +R F+L+ S +EIYNE I+DLLS LR+ +DP KGVVV
Sbjct: 99 GIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVA 158
Query: 63 KVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENST 122
+TEEI+ HL +L++ E R +GET NE+SSRSH I +L IES R E+ T
Sbjct: 159 GLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS--ESGT 216
Query: 123 TLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN-GHINYRD 181
+++N +DLAGSERASQ G R KEG IN+SLLTL TVI KLS+G+N GHI YRD
Sbjct: 217 VRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRD 275
Query: 182 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 227
SKLTR+LQP L GNARTAIICT+SPA SHVE+T NTL FA AK+V
Sbjct: 276 SKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321
|
This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321 |
| >gnl|CDD|221365 pfam11995, DUF3490, Domain of unknown function (DUF3490) | Back alignment and domain information |
|---|
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| PF11995 | 161 | DUF3490: Domain of unknown function (DUF3490); Int | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 99.97 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 84.74 | |
| PF04420 | 161 | CHD5: CHD5-like protein; InterPro: IPR007514 Membe | 82.91 |
| >PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-90 Score=663.34 Aligned_cols=161 Identities=66% Similarity=1.107 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhhhccccceecceeeeeecCCCCCceeeeeehhhhhhHHHHhhcCCccccCCccccHHHHHHHHHHHH
Q 003184 663 EFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRER 742 (841)
Q Consensus 663 ~F~~~~~~IieLW~~C~vslvHRtyFfLLfkGd~~D~iYmeVElRRLs~lk~~~~~~~~~~~~~~~~~~~ss~k~l~~er 742 (841)
+||+||++||||||+|||||||||||||||||||+|+||||||||||+|||+||+++++|++|++++|++||+|||+|||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER 80 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRER 80 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhCCCCCcccchhhhhhhccCCcccchhHHHHHHHHHHHhhhccccccccccccccccC
Q 003184 743 ETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTP 822 (841)
Q Consensus 743 ~~l~k~~~~rl~~~ere~ly~kwgi~l~~k~rrlql~~~lwt~~~d~~hv~esa~~vaklv~~~e~~~~~kemf~l~f~~ 822 (841)
+||||||++|||.+|||+||.||||||+||||||||||+|||||+||+||+|||+||||||||||||+|+||||||||+|
T Consensus 81 ~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFgLnF~~ 160 (161)
T PF11995_consen 81 EMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFGLNFTP 160 (161)
T ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 003184 823 L 823 (841)
Q Consensus 823 ~ 823 (841)
|
T Consensus 161 ~ 161 (161)
T PF11995_consen 161 P 161 (161)
T ss_pred C
Confidence 6
|
This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA. |
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 841 | ||||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 9e-43 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 6e-39 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-32 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 3e-31 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 1e-30 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 2e-30 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 3e-30 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 3e-30 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 2e-29 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 2e-29 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 3e-29 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 4e-29 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 4e-29 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 6e-29 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 7e-29 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 1e-28 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 1e-28 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 1e-28 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 1e-28 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 1e-28 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 1e-28 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 2e-28 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 2e-28 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 2e-28 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 4e-28 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 6e-28 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 8e-28 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 5e-27 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 6e-27 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 6e-25 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 6e-24 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 6e-24 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 7e-24 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 1e-23 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 2e-23 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 4e-23 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 7e-23 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 2e-22 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 2e-22 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 6e-22 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-21 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 2e-21 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 3e-21 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 1e-20 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 1e-20 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 1e-20 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-20 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 5e-19 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 8e-19 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 1e-18 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 1e-18 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 2e-18 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 3e-17 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 3e-16 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 5e-16 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 1e-11 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-11 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 1e-09 |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
|
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 349 bits (897), Expect = e-113
Identities = 107/248 (43%), Positives = 147/248 (59%), Gaps = 5/248 (2%)
Query: 3 GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPEKGVV 60
G+ + DIF I + +R F+L+ S MEIYNE I DLL + PL + +D + V
Sbjct: 103 GVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVY 162
Query: 61 VEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 120
V +TEE++ + ++ E R GET +N++SSRSH I R+++ES +
Sbjct: 163 VADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCE 222
Query: 121 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG-HINY 179
+ + +N VDLAGSERA+Q + G RLKEGC+INRSL L VI+KLS G+ G INY
Sbjct: 223 GSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINY 282
Query: 180 RDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSD 239
RDSKLTR+LQ LGGNA+T IICT++P ++T L FA AK + VN V +D
Sbjct: 283 RDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTD 340
Query: 240 KALVKHLQ 247
+ H
Sbjct: 341 ELEHHHHH 348
|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.96 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.95 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 97.33 |
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-61 Score=530.73 Aligned_cols=248 Identities=38% Similarity=0.496 Sum_probs=211.3
Q ss_pred CCcHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEEcCceeecCCCCCCCceeeeCCCCCeEecccEEEEecCHHHHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLS 80 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~-e~efsV~vSylEIYNE~V~DLLs~~~~~L~I~ed~~~gv~V~gLtev~V~S~eel~~LL~ 80 (841)
+|||||++++||+.|.... +..|.|+|||+|||||+|+|||++...++.+++|+.++++|.|++++.|.|++|++.+|.
T Consensus 112 ~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~ 191 (365)
T 2y65_A 112 QGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIE 191 (365)
T ss_dssp BCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHH
Confidence 6999999999999998754 679999999999999999999999888999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhcccccchH
Q 003184 81 ICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLL 160 (841)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INkSLl 160 (841)
.|.++|++++|.+|..|||||+||+|+|.+... .......++|+|||||||||..++++.|.+++|+.+||+||+
T Consensus 192 ~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~ 266 (365)
T 2y65_A 192 EGKSNRHIAVTNMNEHSSRSHSVFLINVKQENL-----ENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 266 (365)
T ss_dssp HHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEET-----TTCCEEEEEEEEEECCCCCC----------------CCHHHH
T ss_pred HHHhhcccccccCCCCCCCceEEEEEEEEEEec-----CCCCEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999987532 233457899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeeccccCHH
Q 003184 161 TLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDK 240 (841)
Q Consensus 161 aLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN~~~s~~ 240 (841)
+||+||.+|++++..||||||||||+||||+|||||+|+|||||||+..+++||++||+||.|||+|+|+|++|...+..
T Consensus 267 aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~ 346 (365)
T 2y65_A 267 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAE 346 (365)
T ss_dssp HHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSH
T ss_pred HHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHH
Confidence 99999999998877799999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHH
Q 003184 241 ALVKHLQKELARLE 254 (841)
Q Consensus 241 alik~Lq~EiarLe 254 (841)
.+++.|++|+.+++
T Consensus 347 ~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 347 EWKRRYEKEKEKNA 360 (365)
T ss_dssp HHHHC---------
T ss_pred HHHHHHHHHHHHHH
Confidence 89888888887665
|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 841 | ||||
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 8e-50 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 7e-46 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 5e-45 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 1e-44 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 7e-44 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 2e-41 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 2e-40 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 2e-37 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 7e-36 |
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Neurospora crassa [TaxId: 5141]
Score = 177 bits (449), Expect = 8e-50
Identities = 83/242 (34%), Positives = 131/242 (54%), Gaps = 9/242 (3%)
Query: 15 YIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNH 74
+ + ++ S MEIY E IRDLL+ N L + ++ +GV V+ + E +
Sbjct: 122 ILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQE 181
Query: 75 LKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLA 134
+ E++ R + T +N++SSRSH I + I E + S + VDLA
Sbjct: 182 VYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQK-----NVETGSAKSGQLFLVDLA 236
Query: 135 GSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGG 194
GSE+ + ++G L+E IN+SL L VI L+ G++ H+ YRDSKLTR+LQ LGG
Sbjct: 237 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGG 296
Query: 195 NARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLE 254
N+RT +I SP+ + +T +TL F AK + KA+VN +S L++ LA+ +
Sbjct: 297 NSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE----LKQMLAKAK 352
Query: 255 SE 256
++
Sbjct: 353 TQ 354
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 841 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=9.6e-55 Score=475.23 Aligned_cols=248 Identities=34% Similarity=0.527 Sum_probs=215.1
Q ss_pred CCcHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEEcCceeecCCCCCC---CceeeeCCCCCeEecccEEEEecCHHHHHH
Q 003184 2 TGITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNT---PLRLLDDPEKGVVVEKVTEEILKDWNHLKE 77 (841)
Q Consensus 2 ~GIIprav~dLF~~Ie~~~-e~efsV~vSylEIYNE~V~DLLs~~~~---~L~I~ed~~~gv~V~gLtev~V~S~eel~~ 77 (841)
+|||||++.+||+.+.... +..|.|++||+|||||.|+|||.+... .+.+++|+.++++|.|++++.|.++++++.
T Consensus 99 ~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~~v~~l~~~~v~s~~~~~~ 178 (364)
T d1sdma_ 99 PGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKT 178 (364)
T ss_dssp BCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHH
T ss_pred cchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeecccCccccccceeeeeCCHHHHHH
Confidence 7999999999999998765 578999999999999999999987553 689999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCceeEEEEEEeeccccccCCCCcceeEeeeeEeecCCCcccccccchhhhhhhhccccc
Q 003184 78 LLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINR 157 (841)
Q Consensus 78 LL~~G~~~R~~~sT~lN~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SrL~fVDLAGSER~~kt~s~g~rlkEg~~INk 157 (841)
+|..|.++|++++|.+|..|||||+||+|+|.+... .......++|+|||||||||..++++.|.+++|+.+||+
T Consensus 179 ~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~-----~~~~~~~~kl~~vDLAGsEr~~~~~~~g~~~~E~~~iN~ 253 (364)
T d1sdma_ 179 IIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL-----QTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINK 253 (364)
T ss_dssp HHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEET-----TTCCEEEEEEEEEECCCCSCCCC---------CCCTTCH
T ss_pred HhhccceeeccccccccccccccceEEEEEEEEecc-----CcceeeeEEEEeechhhccccccccccCceeeecccccc
Confidence 999999999999999999999999999999987543 334568899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhcCCCCcccCCChhhhhccccccCCCccceEEeecCCCCCCHHHHHHHHHHHHHhcccccceeecccc
Q 003184 158 SLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVM 237 (841)
Q Consensus 158 SLlaLg~VI~aLs~gk~~hIPYRDSKLTrLLqdSLGGNsrT~mIa~ISPa~~~~eETLsTLrFAsrAK~I~n~p~vN~~~ 237 (841)
||++|++||.+|+++. .|||||+||||+||+|+|||||+|+|||||||+..+++||++||+||++|++|+|+|.+|...
T Consensus 254 SL~~L~~vi~aL~~~~-~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n~~~ 332 (364)
T d1sdma_ 254 SLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS 332 (364)
T ss_dssp HHHHHHHHHHHHHHTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCCEEC
T ss_pred chhhHHHHHHHHHcCC-CcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHHhhcccCCcccCCH
Confidence 9999999999999864 499999999999999999999999999999999999999999999999999999999999875
Q ss_pred CHHHHHHHHHHHHHHHHHHhc
Q 003184 238 SDKALVKHLQKELARLESELR 258 (841)
Q Consensus 238 s~~alik~Lq~EiarLe~eL~ 258 (841)
. .+.+|+++++.|+.++.
T Consensus 333 ~---~~~~l~~~i~~l~~~~~ 350 (364)
T d1sdma_ 333 K---EVARLKKLVSYWKEQAG 350 (364)
T ss_dssp H---HHHHHHTTTTCC-----
T ss_pred H---HHHHHHHHHHHHHHHHH
Confidence 3 35566666666666553
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|