Citrus Sinensis ID: 003191

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840
Protein Sequence
MDEHSVHKPLLNGSVDAVHYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENFERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccEEHHHHHHHHHHHHHHHHHHEEEHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEcccccccccccEEEEEEcccccccccccEEEccccccccEEEEEEEEcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccHHHHHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHHccccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccEEEEEHHHHHHHHHHHHHHHHHccccccccccccccccEEEccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHEEcHHHHHHEEEEEEEHHHHHEEEEEEEccccccccHHEEEEEccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEcccccEEcccEEEEEEcccccccccccEEEEccccccccEEEEEEEEccHHHHHHHHHHccccccccccccccccccccccEEEEcccccccHHHHcEEEEEEEccHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEcccccccEEEEEEEEccccHHccccccEEEEEEcccccHHHHHHHHHcccccccccEEEEEcccccccHHHHHccEEEEEEccccHHHHHHHHHHHHHHccccccccccEEEEEEEEcccHHHHHHHHcccccccccccHccEEEEEEEEEEcccccccccccccEEEEEEccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccHccccccccccccccccccccHcccccccEEEccccccHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHHcccHHcccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
mdehsvhkpllngsvdavhykqtpLYVSALKWVLKILMWVIFVAWVALIFLypsefgseltqkftratsgtifgitGSMFLIFSGPIAIIAFLAIAHLIISgeenferkkapkhprfrlwtfpvlvdgpfgvvsAAEFVGIVLFVVFIFWAVYTYTMRNISllsefriptkEQSIWMLELTGlrldtmygwDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDvlsasclpcgtvelvlskpanlryNALSFFFLQVRELswlqwhpfsvsssplegkyhSSVLIKVLGEWTENLRDYILSksesdsqvgppppvpppeghpppvhppqgpvrnlMYENLILVAGgiseanphvgpplpvpppqgapppgpplqeegpppqgphppvpppqgpppplpppkgnlmyENLIVVAGgisetepqvgppppvpppqgsppqrpppsrhpllpptkitasvegpyghevpyHLMYENLILVAGGIGISPFLAILSDILHRInegksclprnVLIVWAVKKSNELSLLSNfykesicpffsdklnLETFIYVtreteppleegelhktmsssiypvpsgcAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILyvnpfnihSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWErkssarenykddsievdnaqnvgtmahndirkkdtksstnilygsrpdfkeifgstskkwghvdvgvivcgppslqssVAKEIrshslmrechdpifhfhshsfdl
Flexible Loop (DISEMBL)
mdehsvhkpllngsvdavhYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENFERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTREteppleegelHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKddsievdnaqnvgtmahndirkkdtksstnilygsrPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Low Complexity Region (SEG)
MDEHSVHKPLLNGSVDAVHYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPiaiiaflaiahliiSGEENFERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEfvgivlfvvfifWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGiflfildrflrfCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSqvgppppvpppeghpppvhppqgpvRNLMYENLILVAGGISEANphvgpplpvpppqgapppgpplqeegpppqgphppvpppqgpppplpppKGNLMYENLIVVAGGISETEpqvgppppvpppqgsppqrpppsrhpllppTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Disordered region (IsUnstruct)
**********LNGSVDAVHYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENFER***PKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVF******IFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL*********************************NLMYENLILVAGGI********************************************************LMYENLIVVAGG****************************************SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR*****************SIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWER***************************************ILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPS*************LMRECHDPIFHF*******
Disordered Region (DISOPRED)
****************************ALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEEN******P*HPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYI***************VPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP*****************************PPKGNLMYENLIVVAGGISETEPQ***********GSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET*********************************NNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHL*************************************KSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRS*SL*RECHDPIFHFHSHSFDL
Disordered Region (DISEMBL)
MDEHSVHKPLLNGSVDAVHYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENFERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKS**************PEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPP*****************************PPPPLPPPKGNLMYENLIVVAGGISET************************RHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Disordered Region (DISPRO)
*******************YKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEE********KHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG*PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSS*****************************DTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEHSVHKPLLNGSVDAVHYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENFERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTMYGWDILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	840	2.2.26 [Sep-21-2011]
Q3KTM0	747	Ferric reduction oxidase	yes	no	0.469	0.527	0.562	1e-132
Q8RWS6	738	Ferric reduction oxidase	no	no	0.465	0.529	0.557	1e-129
Q9LMM2	704	Probable ferric reduction	no	no	0.459	0.548	0.312	2e-48
P92949	725	Ferric reduction oxidase	no	no	0.451	0.522	0.304	1e-47
F4I4K7	717	Ferric reduction oxidase	no	no	0.459	0.538	0.307	1e-45
Q8W110	699	Ferric reduction oxidase	no	no	0.448	0.539	0.305	9e-44
Q9FLW2	707	Ferric reduction oxidase	no	no	0.451	0.536	0.287	3e-41
Q8VY13	728	Ferric reduction oxidase	no	no	0.445	0.513	0.291	2e-37
O81211	952	Respiratory burst oxidase	no	no	0.180	0.159	0.329	1e-15
Q9SW17	849	Putative respiratory burs	no	no	0.160	0.159	0.337	2e-14

>sp|Q3KTM0|FRO7_ARATH Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1

 Score =  472 bits (1214), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/446 (56%), Positives = 309/446 (69%), Gaps = 52/446 (11%)

Query: 30  LKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAI 89
           LKW+LK++M VIFV WV  + +YP   G ++   +   +S T+FG+TGSMFLIFSGPI +
Sbjct: 31  LKWILKVVMSVIFVTWVVFLMMYPGSLGDQILTNWRAISSNTLFGLTGSMFLIFSGPILV 90

Query: 90  IAFLAIAHLIISGEEN-FERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFI 148
           IA LA  +LIISGEE  F +KK  K PRFRLWTFPVLVDGPFGVVSAAEF+GI++F VF 
Sbjct: 91  IAILASLYLIISGEETVFTKKKITKFPRFRLWTFPVLVDGPFGVVSAAEFLGIMVFSVFF 150

Query: 149 FWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTM-------------YGWDILR 195
            WA+Y YT+RN+++L  F +    +SI++LELTGLR   +              G  +LR
Sbjct: 151 LWAIYAYTLRNLNVLDYFHVLPNNRSIFLLELTGLRFGMIGLLCMVFLFLPISRGSILLR 210

Query: 196 WCSLRF---TGY------------------FMIAWDIQGRLVQELLAWRNIGIANFPGVI 234
              + F   T Y                  +++ W IQG+L++ L  W+  GIA  PGVI
Sbjct: 211 LIDIPFEHATRYHVWLGHITMTFFSLHGLCYVVGWTIQGQLLELLFEWKATGIAVLPGVI 270

Query: 235 SLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILD 294
           SL+AGL+MW TS H VRK++F+LFFYTHQLY+VFVVFLALHVGD++FS+ AGGIFLFILD
Sbjct: 271 SLVAGLLMWVTSLHTVRKNYFELFFYTHQLYIVFVVFLALHVGDYLFSIVAGGIFLFILD 330

Query: 295 RFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSV 354
           RFLRF QSRRTVDV+SA  LPCGT+ELVLSKP N+RYNALSF FLQV+ELSWLQWHPFSV
Sbjct: 331 RFLRFYQSRRTVDVISAKSLPCGTLELVLSKPPNMRYNALSFIFLQVKELSWLQWHPFSV 390

Query: 355 SSSPLEGKYHSSVLIKVLGEWTENLRDYI--LSKSESDSQVGPPPPVPP-------PEGH 405
           SSSPL+G +H +VLIKVLG WT  LRD +  L ++E+  Q+  P   P        P GH
Sbjct: 391 SSSPLDGNHHVAVLIKVLGGWTAKLRDQLSTLYEAENQDQLISPESYPKITTCVEGPYGH 450

Query: 406 PPPVHPPQGPVRNLMYENLILVAGGI 431
             P H        L YENL+LVAGGI
Sbjct: 451 ESPYH--------LAYENLVLVAGGI 468

Ferric chelate reductase involved in iron mobilization from the cytosol into the chloroplast. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. Might be involved iron homeostasis in trichomes.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 6EC: .EC: 1EC: .EC: 7

>sp|Q8RWS6|FRO6_ARATH Ferric reduction oxidase 6 OS=Arabidopsis thaliana GN=FRO6 PE=2 SV=1

 Score =  461 bits (1187), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/447 (55%), Positives = 308/447 (68%), Gaps = 56/447 (12%)

Query: 30  LKWVLKILMWVIFVAWVA-LIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIA 88
           LKW+LK++M +IFV WV  L+ +YP + G +     T  +S T  G TG+MFLIFS PI 
Sbjct: 24  LKWILKVVMSMIFVTWVVFLMMMYPEQLGDDF---LTFVSSKTFLGTTGTMFLIFSCPIL 80

Query: 89  IIAFLAIAHLIISGEEN-FERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVF 147
           +I+ LA  +LIISGE+  F +KK  K PRFRLWTFPVLVDGPFGVVSAAEF+GI++F VF
Sbjct: 81  VISVLASLYLIISGEDKVFTKKKISKFPRFRLWTFPVLVDGPFGVVSAAEFLGIMVFSVF 140

Query: 148 IFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTM-------------YGWDIL 194
             W++Y YT+RN+ LL  F +  K +SI +LE+TGLRL  +              G  +L
Sbjct: 141 FLWSIYAYTLRNLDLLERFHVLPKNRSILLLEVTGLRLGMIGLLCMVFLFLPISRGSILL 200

Query: 195 RWCSLRF---TGY------------------FMIAWDIQGRLVQELLAWRNIGIANFPGV 233
           R   + F   T Y                  +++ W IQG+L++ + +W  IGIA  PGV
Sbjct: 201 RLIDIPFEHATRYHVWLGHITMAFFSLHGLCYVVGWIIQGQLLELIFSWNAIGIAILPGV 260

Query: 234 ISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFIL 293
           ISL+AGL+MW TS H VRK++F+LFFYTHQLY+VF+VFLALHVGD++FS+ AGGIFLFIL
Sbjct: 261 ISLVAGLLMWVTSLHTVRKNYFELFFYTHQLYIVFIVFLALHVGDYMFSIVAGGIFLFIL 320

Query: 294 DRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFS 353
           DRFLRFCQSRRTVDV+SA  LPCGT+ELVLSKP N+RYNALSF FLQVRELSWLQWHPFS
Sbjct: 321 DRFLRFCQSRRTVDVISAKSLPCGTLELVLSKPPNMRYNALSFIFLQVRELSWLQWHPFS 380

Query: 354 VSSSPLEGKYHSSVLIKVLGEWTENLRDYI--LSKSESDSQVGPPPPVPP-------PEG 404
           VSSSPL+G +H +VLIKVLG WT  LRD +  L ++E+  Q+  P   P        P G
Sbjct: 381 VSSSPLDGNHHVAVLIKVLGGWTAKLRDQLSNLYEAENQDQLISPQSYPKITTCVEGPYG 440

Query: 405 HPPPVHPPQGPVRNLMYENLILVAGGI 431
           H  P H        L YENL+LVAGGI
Sbjct: 441 HESPYH--------LAYENLVLVAGGI 459

Ferric chelate reductase involved in iron uptake by shoot and leaf cells. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9LMM2|FRO1_ARATH Probable ferric reduction oxidase 1 OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score =  194 bits (494), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 138/442 (31%), Positives = 218/442 (49%), Gaps = 56/442 (12%)

Query: 33  VLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGT--IFGITGSMFLIFSGPIAII 90
           V+K LM VI +  + +  + P+    E+     RA  G    +G  G   L++  P+ ++
Sbjct: 14  VIKFLMMVILMGTIVIWIMMPTSTYKEIWLTSMRAKLGKSIYYGRPGVNLLVYMFPMILL 73

Query: 91  AFLAIAHLIISGE---ENFERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVF 147
           AFL   +L +        F      K  +F     P+LV+GP G+V+  E + + +F+  
Sbjct: 74  AFLGCIYLHLKKSTTVNQFNSGVEKKRAKFGALRRPMLVNGPLGIVTVTEVMFLTMFMAL 133

Query: 148 IFWAVYTYTMRNISLLSEFRIPTKEQSIWM--LELTGLRLDTM-------------YGWD 192
           + W++  Y  R    ++     T   ++W   L+L  +R+  +              G  
Sbjct: 134 LLWSLANYMYRTFVNVTSESAATDGNNLWQARLDLIAVRIGIVGNICLAFLFYPVARGSS 193

Query: 193 ILRWCSLR------------------FTGY---FMIAWDIQGRLVQELLAWRNIGIANFP 231
           +L    L                   FT +   + I W  + +LV ++L W    ++N  
Sbjct: 194 LLAAVGLTSESSIKYHIWLGHLVMIIFTSHGLCYFIYWISKNQLVSKMLEWDRTAVSNLA 253

Query: 232 GVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLF 291
           G I+L+AGLMMW T++  +R+  F++FFY+H LY+VF++F   HVG     +   G ++F
Sbjct: 254 GEIALVAGLMMWVTTYPKIRRRLFEVFFYSHYLYIVFMLFFVFHVGISHALIPLPGFYIF 313

Query: 292 ILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHP 351
           ++DRFLRF QSR  V ++SA  LPC TVEL  SK   L Y+  S  F+ +  +S LQWHP
Sbjct: 314 LVDRFLRFLQSRNNVKLVSARVLPCDTVELNFSKNPMLMYSPTSTMFVNIPSISKLQWHP 373

Query: 352 FS-VSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVH 410
           F+ +SSS LE +   SV+IK  G+W+  L D +LS S SD Q+               V 
Sbjct: 374 FTIISSSKLEPE-TLSVMIKSQGKWSTKLYD-MLSSSSSD-QINRL---------AVSVE 421

Query: 411 PPQGPVRN--LMYENLILVAGG 430
            P GP     L +E+L++V+GG
Sbjct: 422 GPYGPSSTDFLRHESLVMVSGG 443

Ferric chelate reductase involved in iron reduction in roots (By similarity). May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|P92949|FRO2_ARATH Ferric reduction oxidase 2 OS=Arabidopsis thaliana GN=FRO2 PE=1 SV=2

 Score =  192 bits (488), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 222/450 (49%), Gaps = 71/450 (15%)

Query: 30  LKWVLKILMWVIFVAWVAL-----IFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFS 84
           +K V K LM VIF+  + L        Y +++   L  KF    + T FG TG+   ++ 
Sbjct: 23  IKGVTKFLMMVIFLGTIMLWIMMPTLTYRTKWLPHLRIKFG---TSTYFGATGTTLFMYM 79

Query: 85  GPIAIIAFLAIAHLIISGEENFERKKAPKH----PRFRLWTF---PVLVDGPFGVVSAAE 137
            P+ ++A L   +L      +F+ +K+P H     +  +W+    P+LV GP G+VS  E
Sbjct: 80  FPMMVVACLGCVYL------HFKNRKSPHHIDRETKGGVWSKLRKPMLVKGPLGIVSVTE 133

Query: 138 FVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWM--LELTGLRLDTM------- 188
              + +FV  + W   TY   + + ++       ++S+W   LE   LRL  +       
Sbjct: 134 ITFLAMFVALLLWCFITYLRNSFATITPKSAAAHDESLWQAKLESAALRLGLIGNICLAF 193

Query: 189 ------YGWDIL------RWCSLRF---TGYFMIA-WDIQGRL----------VQELLAW 222
                  G  +L         S+++    G+ ++A + + G            + +++ W
Sbjct: 194 LFLPVARGSSLLPAMGLTSESSIKYHIWLGHMVMALFTVHGLCYIIYWASMHEISQMIMW 253

Query: 223 RNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFS 282
              G++N  G I+L AGL+MWAT++  +R+ FF++FFYTH LY+VF++F  LHVG     
Sbjct: 254 DTKGVSNLAGEIALAAGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVLHVGISFSF 313

Query: 283 MAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVR 342
           +A  G ++F++DRFLRF QSR  V +L+A  LP  T+EL  SK + L Y+  S  F+ + 
Sbjct: 314 IALPGFYIFLVDRFLRFLQSRENVRLLAARILPSDTMELTFSKNSKLVYSPTSIMFVNIP 373

Query: 343 ELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPP 402
            +S LQWHPF+++SS        S++IK  G+W+  L   + S  + D            
Sbjct: 374 SISKLQWHPFTITSSSKLEPEKLSIVIKKEGKWSTKLHQRLSSSDQIDRL---------- 423

Query: 403 EGHPPPVHPPQGPVRN--LMYENLILVAGG 430
                 V  P GP     L +E L++V GG
Sbjct: 424 ---AVSVEGPYGPASADFLRHEALVMVCGG 450

Flavocytochrome that transfers electrons across the plasma membrane to reduce ferric iron chelates to form soluble ferrous iron in the rhizosphere. May be involved in the delivery of iron to developing pollen grains. Acts also as a copper-chelate reductase. Involved in glycine betaine-mediated chilling tolerance and reactive oxygen species accumulation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|F4I4K7|FRO3_ARATH Ferric reduction oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=FRO3 PE=2 SV=1

 Score =  185 bits (470), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 217/446 (48%), Gaps = 60/446 (13%)

Query: 30  LKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGT--IFGITGSMFLIFSGPI 87
           +K V+K+L  VI +  V +  + P+    ++  K  RA  G    FG  G   L++  P+
Sbjct: 34  IKNVIKLLTMVILMGTVVIWIMMPTSTYKKIWLKSMRAKLGKSIYFGKPGVNLLVYMFPM 93

Query: 88  AIIAFLAIAHLIISGEENFE----RKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVL 143
            ++A L   +L +  +        R    K  +F     P+LV    G+V+  E + +++
Sbjct: 94  ILLASLGSIYLHLKKQTRVNQFNSRMDRKKIDKFGALKRPMLVKAGLGIVTVTEVMFLMM 153

Query: 144 FVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELT------GLRLDTMYG---WDIL 194
           F+  + W++  Y       ++   +PT   ++W   L       GL  +   G   + + 
Sbjct: 154 FMALLLWSLANYFYHTFVTITPQSLPTDGDNLWQARLDSIAVRLGLTGNICLGFLFYPVA 213

Query: 195 RWCSLR------------------------FTGY---FMIAWDIQGRLVQELLAWRNIGI 227
           R  SL                         FT +   + I W I    V ++L W   GI
Sbjct: 214 RGSSLLAAVGLTSESSTKYHIWLGNLVMTLFTSHGLCYCIYW-ISTNQVSQMLEWDRTGI 272

Query: 228 ANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGG 287
           ++  G I+L+AGL+MWAT+F  +R+ FF++FFYTH LY+VF++F   HVG     ++  G
Sbjct: 273 SHLAGEIALVAGLLMWATTFPAIRRRFFEVFFYTHYLYMVFMLFFVFHVGISYALISFPG 332

Query: 288 IFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWL 347
            ++F++DRFLRF QSR  V ++SA  LPC TVEL  SK   L Y+  S  F+ +  +S L
Sbjct: 333 FYIFMVDRFLRFLQSRNNVKLVSARVLPCETVELNFSKNPMLMYSPTSILFVNIPSISKL 392

Query: 348 QWHPFSV-SSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHP 406
           QWHPF++ SSS LE K   SV+IK  G+W+  L   + S ++ D                
Sbjct: 393 QWHPFTITSSSKLEPK-KLSVMIKSQGKWSSKLHHMLASSNQIDHL-------------A 438

Query: 407 PPVHPPQGPVRN--LMYENLILVAGG 430
             V  P GP     L +++L++V+GG
Sbjct: 439 VSVEGPYGPASTDYLRHDSLVMVSGG 464

Ferric chelate reductase involved in iron reduction in roots. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q8W110|FRO4_ARATH Ferric reduction oxidase 4 OS=Arabidopsis thaliana GN=FRO4 PE=2 SV=1

 Score =  179 bits (454), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 135/442 (30%), Positives = 210/442 (47%), Gaps = 65/442 (14%)

Query: 30  LKWVLKILMWVIFVAWVAL-IFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIA 88
           ++ ++K LM V+F+ W+ + I +  + F S+ T K ++  + T FG  G+  ++ + P+ 
Sbjct: 4   MRSLVKTLMVVLFLGWILVWIMISTNLFKSKWTPKLSKYLNTTYFGPQGTNLVLLTVPMM 63

Query: 89  IIAFLAIAHLIISGEENFERKKAPKHPRFRLWTFP------VLVDGPFGVVSAAEFVGIV 142
            IA L+  +L I        +K P  P+ R W         ++V  P G+V+A E    +
Sbjct: 64  FIAVLSCVYLHI--------QKKPTQPQ-REWKLKRIMGRVIMVMNPLGIVTATELTFSL 114

Query: 143 LFVVFIFWAVYTYTMRNISL-----------LSEFR------------------IPTKEQ 173
           LFV  + W++Y Y   +  +            ++FR                   P    
Sbjct: 115 LFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRIGYVGNICWAFLFFPVTRA 174

Query: 174 SIWMLELTGLRLDTMYGWDIL-----RWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIA 228
           S  +L L GL  ++   + I       +C L  T  F+I W +  +L+ E  AW    + 
Sbjct: 175 ST-ILPLVGLTSESSIKYHIWLGHVSNFCFLVHTVVFLIYWAMINKLM-ETFAWNPTYVP 232

Query: 229 NFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGI 288
           N  G I+++ G+ MW TS    R+  F++FFYTH LY +++VF  +HVGD  F M    I
Sbjct: 233 NLAGTIAMVIGIAMWVTSLPSFRRKKFEIFFYTHHLYGLYIVFYVIHVGDSWFCMILPNI 292

Query: 289 FLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQ 348
           FLF +DR+LRF QS +   ++SA  LP   +EL  SK   L Y   S  FL V  +S +Q
Sbjct: 293 FLFFIDRYLRFLQSTKRSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKIQ 352

Query: 349 WHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPP 408
           WHPF+++SS    K   SV+I+  G WT+ L  + LS S    +V    P  P       
Sbjct: 353 WHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTH-LSSSIDSLEVSTEGPYGPNSFDVSR 411

Query: 409 VHPPQGPVRNLMYENLILVAGG 430
                       + +LILV+GG
Sbjct: 412 ------------HNSLILVSGG 421

Ferric chelate reductase. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9FLW2|FRO5_ARATH Ferric reduction oxidase 5 OS=Arabidopsis thaliana GN=FRO5 PE=2 SV=1

 Score =  171 bits (432), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 202/448 (45%), Gaps = 69/448 (15%)

Query: 30  LKWVLKILMWVIFVAWVAL-IFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIA 88
           ++ ++K+LM V+F+ W+ + I +  + F +  T K  +    T FG  G   ++ + P+ 
Sbjct: 4   MRSLVKMLMVVLFLGWIFVWIMISTNRFQNIWTPKLAKYLKTTYFGPQGMNLVLLTVPMM 63

Query: 89  IIAFLAIAHLIISGEENFERKKAPKHP----RFRLWTFP------VLVDGPFGVVSAAEF 138
            IA L+  +L          +K P       + R W         ++V  P G+V+A E 
Sbjct: 64  FIAVLSCVYL--------HTQKQPSQTQSLYKCREWKVKGRMGRVMMVMNPLGIVTATEL 115

Query: 139 VGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELT--GLRLDTM--YGWDIL 194
              +LF+  + WA+  Y   +  +         +   W  +    GLR+  +  Y W  L
Sbjct: 116 TFSLLFLALLVWALSNYLYLSYHVHLHNHDNANDMCRWQAKFRAFGLRIGYVGHYCWAFL 175

Query: 195 --------------------------------RWCSLRFTGYFMIAWDIQGRLVQELLAW 222
                                            +C L  T  F+I W +  +L+ E  AW
Sbjct: 176 FFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFCFLVHTVVFLIYWAMVNKLM-ETFAW 234

Query: 223 RNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFS 282
               + N  G I+++ G+ +W TS    R+  F++FFYTH LY +++VF A+HVGD  F 
Sbjct: 235 NATYVPNLAGTIAMVIGIAIWVTSLPSFRRKKFEIFFYTHHLYGLYIVFYAIHVGDSWFC 294

Query: 283 MAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVR 342
           M    IFLF +DR+LRF QS +   ++SA  LP   +EL  +K + L Y   S  FL V 
Sbjct: 295 MILPNIFLFFIDRYLRFLQSTKRSRLVSAKILPSDNLELTFAKTSGLHYTPTSILFLHVP 354

Query: 343 ELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPP 402
            +S LQWHPF+++SS    K   SV+I+  G WT+ L  + LS S    +V    P  P 
Sbjct: 355 SISKLQWHPFTITSSSNLEKDTLSVVIRKQGSWTQKLYTH-LSSSIDSLEVSTEGPYGPN 413

Query: 403 EGHPPPVHPPQGPVRNLMYENLILVAGG 430
                             +++LILV GG
Sbjct: 414 SFDVSR------------HDSLILVGGG 429

Ferric chelate reductase probably involved in iron reduction in shoots. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates. May act in iron metabolism in reproductive organs.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|Q8VY13|FRO8_ARATH Ferric reduction oxidase 8, mitochondrial OS=Arabidopsis thaliana GN=FRO8 PE=2 SV=1

 Score =  158 bits (399), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 200/429 (46%), Gaps = 55/429 (12%)

Query: 43  VAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISG 102
           + W++L  + P+    +  ++       T FG  G  F +FS P   ++ + + +L +  
Sbjct: 19  IGWISLWIIKPTTIWIQSWRQAEDTARHTFFGYYGLNFAVFSFPPIALSIVGLIYLSLLP 78

Query: 103 EENF----ERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTY--- 155
           + +      R  A    R      P +++   G+VS  E + ++LF++F+ W  Y     
Sbjct: 79  QHHHPTRGGRGAAITVSR------PAIINSFIGIVSCFEILALLLFLLFLAWNFYARVSN 132

Query: 156 ---------TMR-NISLLSEFRIPTKEQSIWMLELTGLRLDTMYGWDILRWCSLRFT--- 202
                    TM  N+  L  +R+ T+   +    L+ L    + G  + R  ++ F    
Sbjct: 133 DFKKLMPVKTMNLNLWQLKYYRVATRFGLLAEACLSLLLFPVLRGLSMFRLLNIEFAASV 192

Query: 203 ------------------GYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWA 244
                             G  +  W I   + +E+  W+  G     G+ISL+ GL+MW 
Sbjct: 193 KYHVWFGTGLIFFSLVHGGSTLFIWTITHHIEEEIWKWQRTGRVYVAGLISLVTGLLMWI 252

Query: 245 TSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRR 304
           TS   +R+  F++F+YTH LY+VF+V    H GD  F     G+FLF LD+ LR  QSR 
Sbjct: 253 TSLPQIRRKNFEVFYYTHHLYIVFLVAFLFHAGDRHFYWVLPGMFLFGLDKILRIVQSRS 312

Query: 305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYH 364
              +LSA+   C  +ELVL K   L Y   SF FL +  +S  QWHPFS+ SS    K+ 
Sbjct: 313 ESCILSANLFSCKAIELVLPKDPMLNYAPSSFIFLNIPLVSRFQWHPFSIISSSSVDKHS 372

Query: 365 SSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGP--VRNLMYE 422
            S+++K  G+WT ++ + I   +  ++++     +   EG       P GP  V  L Y+
Sbjct: 373 LSIMMKCEGDWTNSVYNKIEEAANCENKIN--NIIVRVEG-------PYGPASVDFLRYD 423

Query: 423 NLILVAGGI 431
           NL LVAGGI
Sbjct: 424 NLFLVAGGI 432

Ferric chelate reductase probably involved in iron reduction in leaf veins for transport. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 1

EC: .

EC: 7

>sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana GN=RBOHE PE=2 SV=2

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 24/176 (13%)

Query: 226 GIANFPGVISLLAGLMMWATSFHPVRKHF---------FQLFFYTHQLYVVFVVFLALHV 276
           GI     VI       + +T F   R            F  F+YTH L VV  + L +H 
Sbjct: 531 GITGISMVILTTIAFTLASTHFRRNRVRLPAPLDRLTGFNAFWYTHHLLVVVYIMLIVH- 589

Query: 277 GDFVF-----------SMAAGGIFLFILDRFLRFCQSRR-TVDVLSASCLPCGTVELVLS 324
           G F+F              +  + L++ +R LR C+S+  +V +L  S LP   + L++S
Sbjct: 590 GTFLFFADKWYQKTTWMYISVPLVLYVAERSLRACRSKHYSVKILKVSMLPGEVLSLIMS 649

Query: 325 KPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR 380
           KP   +Y +  + FLQ   +S  +WHPFS++S+P  G    SV I+ LG+WTE LR
Sbjct: 650 KPPGFKYKSGQYIFLQCPTISRFEWHPFSITSAP--GDDQLSVHIRTLGDWTEELR 703

Calcium-dependent NADPH oxidase that generates superoxide.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q9SW17|RBOHG_ARATH Putative respiratory burst oxidase homolog protein G OS=Arabidopsis thaliana GN=RBOHG PE=2 SV=2

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 22/157 (14%)

Query: 255 FQLFFYTHQLYVVFVVFLALHVGDFVF-----------SMAAGGIFLFILDRFLR-FCQS 302
           F  F+YTH L+V+  + L LH G +++              A  + L+  +R +R F  S
Sbjct: 484 FNAFWYTHHLFVIVYILLVLH-GYYIYLNKEWYKKTTWMYLAVPVALYAYERLIRAFRSS 542

Query: 303 RRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGK 362
            RTV VL  +  P   + L +SKP N +Y +  + F+    +S  +WHPFS++S+P +  
Sbjct: 543 IRTVKVLKMAAYPGKVLTLQMSKPTNFKYMSGQYMFVNCPAVSPFEWHPFSITSTPQDD- 601

Query: 363 YHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPV 399
            + SV IK LG+WTE ++          S+V  PPPV
Sbjct: 602 -YLSVHIKALGDWTEAIQGVF-------SEVSKPPPV 630

Calcium-dependent NADPH oxidase that generates superoxide.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	840
255556713	735	ferric-chelate reductase, putative [Rici	0.491	0.561	0.586	1e-148
147857081	694	hypothetical protein VITISV_035329 [Viti	0.482	0.583	0.597	1e-146
359486141	735	PREDICTED: ferric reduction oxidase 7, c	0.482	0.551	0.595	1e-145
297739426	735	unnamed protein product [Vitis vinifera]	0.482	0.551	0.593	1e-145
224057952	734	predicted protein [Populus trichocarpa]	0.5	0.572	0.565	1e-142
356555827	732	PREDICTED: probable ferric reductase tra	0.502	0.576	0.555	1e-132
297795741	741	ATFRO7/FRO7 [Arabidopsis lyrata subsp. l	0.467	0.530	0.570	1e-132
297795739	742	ATFRO6/FRO6 [Arabidopsis lyrata subsp. l	0.497	0.563	0.550	1e-130
356532942	734	PREDICTED: uncharacterized protein LOC10	0.502	0.574	0.547	1e-130
30695741	747	ferric reduction oxidase 7 [Arabidopsis	0.469	0.527	0.562	1e-130

>gi|255556713|ref|XP_002519390.1| ferric-chelate reductase, putative [Ricinus communis] gi|223541457|gb|EEF43007.1| ferric-chelate reductase, putative [Ricinus communis]

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/469 (58%), Positives = 345/469 (73%), Gaps = 56/469 (11%)

Query: 7   HKPLLNGSVDAVHYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTR 66
           H+PLL+        K+TPL+ S++KW+LK LMWVIFV+WVA IF+YP++FG+EL +K+  
Sbjct: 4   HEPLLS----TYGVKKTPLFTSSVKWILKFLMWVIFVSWVAFIFIYPTQFGNELFEKWIH 59

Query: 67  ATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENFERKKAPKHPRFRLWTFPVLV 126
           ATSGT+FG++GS+FL+ SGPI +IAFL+IAHLII+G+E F++KK  ++P  RLWTFPVLV
Sbjct: 60  ATSGTLFGLSGSIFLLLSGPILLIAFLSIAHLIIAGDEGFKQKKDSRYPSVRLWTFPVLV 119

Query: 127 DGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLD 186
           DGPFGVVSAAEF+GI+LF+V+I WA+Y YT++NISL+SE+ +  K +SIW++ELTGLRL 
Sbjct: 120 DGPFGVVSAAEFIGILLFIVYIVWAIYAYTIQNISLISEWHLNFKLKSIWLIELTGLRLG 179

Query: 187 TM-------------YGWDILRWCSLRFTG---------------------YFMIAWDIQ 212
            +              G  +LR   + F                       ++++ W ++
Sbjct: 180 MIGLFCLAFLFLPIARGSVLLRIIDIPFEHATRYHVWLGHLTMLLFTLHGLFYVVGWAMR 239

Query: 213 GRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFL 272
           G L+ E++ W+++G AN  GVISLLAGL MW TS   VRK  F+LFFYTHQLYVVFV+FL
Sbjct: 240 GDLLYEIMEWKDVGFANLAGVISLLAGLFMWVTSLPGVRKWNFELFFYTHQLYVVFVLFL 299

Query: 273 ALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYN 332
           A HVGDFVFS+AAGGIFLF+LDRFLRFCQSRRTVDV+SA CLPCGTVELVLSKPANLRYN
Sbjct: 300 AFHVGDFVFSIAAGGIFLFMLDRFLRFCQSRRTVDVISAKCLPCGTVELVLSKPANLRYN 359

Query: 333 ALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDS- 391
           ALSF FLQ+RELSWLQWHPFSVSSSPL+GKYH ++LIKVLG+WTE LR  + ++SE++  
Sbjct: 360 ALSFIFLQIRELSWLQWHPFSVSSSPLDGKYHLTILIKVLGKWTEKLRGNVKNRSEAEVA 419

Query: 392 --QVGPPPPVPP-------PEGHPPPVHPPQGPVRNLMYENLILVAGGI 431
             Q  P  P P        P GH  P H        LMYENLILVAGGI
Sbjct: 420 ELQDQPSQPHPKITACVEGPYGHEVPYH--------LMYENLILVAGGI 460

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857081|emb|CAN83907.1| hypothetical protein VITISV_035329 [Vitis vinifera]

 Score =  527 bits (1357), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 272/455 (59%), Positives = 334/455 (73%), Gaps = 50/455 (10%)

Query: 19  HYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGS 78
           + K+TP++ S+ KWVLKI+MWVIF+ W  LIFL+P+E  +EL +K+ + +SGT+FGITGS
Sbjct: 13  YVKKTPIFXSSTKWVLKIVMWVIFIFWATLIFLFPAEPVNELFEKWLQLSSGTVFGITGS 72

Query: 79  MFLIFSGPIAIIAFLAIAHLIIS--GEENFERKKAPKHPRFRLWTFPVLVDGPFGVVSAA 136
           +FL+FSGPI IIAFLAI +L+IS  GEE  + K+    PRFRLWTFPVLVDGPFGVVSAA
Sbjct: 73  IFLVFSGPILIIAFLAIVYLVISDSGEEELQEKRTSNCPRFRLWTFPVLVDGPFGVVSAA 132

Query: 137 EFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTM-------- 188
           EF+GI+LF+VFI WAV +YT++N SLL+EF++P+K Q   MLEL+GLR   +        
Sbjct: 133 EFIGILLFIVFIIWAVCSYTLKNFSLLAEFQLPSKLQCYLMLELSGLRFGLIGLFCXAFL 192

Query: 189 -----YGWDILRWCSLRFTG---------------------YFMIAWDIQGRLVQELLAW 222
                 G  +LR   + F                       +++IAW + GRL+QE+L W
Sbjct: 193 FLPIARGSVLLRLVDIPFEHATKYHVWLGHLTMFLFTLHGLFYVIAWAMDGRLLQEILEW 252

Query: 223 RNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFS 282
           + IG+AN  GVISL+AGL+MW TS  PVRK +F+LFFYTHQLYVVFVVFLALHVGDF+FS
Sbjct: 253 KEIGVANLAGVISLIAGLLMWVTSLSPVRKQYFELFFYTHQLYVVFVVFLALHVGDFIFS 312

Query: 283 MAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVR 342
           MAAGGIFLF+LDRFLRFCQSRRTVD++SA+ LPCGT+ELVLSKP NLRYNALSF FLQV+
Sbjct: 313 MAAGGIFLFMLDRFLRFCQSRRTVDIISATYLPCGTLELVLSKPGNLRYNALSFIFLQVK 372

Query: 343 ELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPP----- 397
           ELSWLQWHPFSVSSSPL+GKYH S+LIKVLGEWTE LR  I +  + + ++   P     
Sbjct: 373 ELSWLQWHPFSVSSSPLDGKYHLSILIKVLGEWTEKLRGNISNFCKEEQELPFQPHSKIT 432

Query: 398 -PVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGI 431
             V  P GH  P H        LMYENL+LVAGGI
Sbjct: 433 ASVEGPYGHESPYH--------LMYENLVLVAGGI 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486141|ref|XP_002266723.2| PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Vitis vinifera]

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/455 (59%), Positives = 333/455 (73%), Gaps = 50/455 (10%)

Query: 19  HYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGS 78
           + K+TP+++S  KWVLKI+MWVIF+ W  LIFL+P+E  +EL +K+ + +SGT+FGITGS
Sbjct: 13  YVKKTPIFLSFTKWVLKIVMWVIFIFWATLIFLFPAEPVNELFEKWLQLSSGTVFGITGS 72

Query: 79  MFLIFSGPIAIIAFLAIAHLIIS--GEENFERKKAPKHPRFRLWTFPVLVDGPFGVVSAA 136
           +FL+FSGPI IIAFLAI +L+IS  GEE  + K+    PRFRLWTFPVLVDGPFGVVSAA
Sbjct: 73  IFLVFSGPILIIAFLAIVYLVISDSGEEELQEKRTSNCPRFRLWTFPVLVDGPFGVVSAA 132

Query: 137 EFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTM-------- 188
           EF+GI+LF+VFI WAV +YT++N SLL+EF++P+K +   MLEL+GLR   +        
Sbjct: 133 EFIGILLFIVFIIWAVCSYTLKNFSLLAEFQLPSKLECYLMLELSGLRFGLIGLFCLAFL 192

Query: 189 -----YGWDILRWCSLRFTG---------------------YFMIAWDIQGRLVQELLAW 222
                 G  +LR   + F                       +++IAW + GRL+QE+L W
Sbjct: 193 FLPIARGSVLLRLVDIPFEHATKYHVWLGHLTMLLFTLHGLFYVIAWAMDGRLLQEILEW 252

Query: 223 RNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFS 282
           + IG+AN  GVISL+AGL+MW TS  PVRK +F+LFFYTHQLYVVFVVFLALHVGDF+FS
Sbjct: 253 KEIGVANLAGVISLIAGLLMWVTSLSPVRKQYFELFFYTHQLYVVFVVFLALHVGDFIFS 312

Query: 283 MAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVR 342
           MAAGGIFLF+LDRFLRFCQSRRTVD++SA+ LPCGT+ELVLSKP NLRYNALSF FLQV+
Sbjct: 313 MAAGGIFLFMLDRFLRFCQSRRTVDIISATYLPCGTLELVLSKPGNLRYNALSFIFLQVK 372

Query: 343 ELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPP----- 397
           ELSWLQWHPFSVSSSPL+GKYH S+LIKVLGEWTE LR  I +  +   ++   P     
Sbjct: 373 ELSWLQWHPFSVSSSPLDGKYHLSILIKVLGEWTEKLRGNISNFCKEKQELPFQPHSKIT 432

Query: 398 -PVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGI 431
             V  P GH  P H        LMYENL+LVAGGI
Sbjct: 433 ASVEGPYGHESPYH--------LMYENLVLVAGGI 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739426|emb|CBI29608.3| unnamed protein product [Vitis vinifera]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/455 (59%), Positives = 332/455 (72%), Gaps = 50/455 (10%)

Query: 19  HYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGS 78
           + K+TP+++S  KWVLKI+MWVIF+ W  LIFL+P+E  +EL +K+ + +SGT+FGITG 
Sbjct: 13  YVKKTPIFLSFTKWVLKIVMWVIFIFWATLIFLFPAEPVNELFEKWLQLSSGTVFGITGC 72

Query: 79  MFLIFSGPIAIIAFLAIAHLIIS--GEENFERKKAPKHPRFRLWTFPVLVDGPFGVVSAA 136
           +FL+FSGPI IIAFLAI +L+IS  GEE  + K+    PRFRLWTFPVLVDGPFGVVSAA
Sbjct: 73  IFLVFSGPILIIAFLAIVYLVISDSGEEELQEKRTSNCPRFRLWTFPVLVDGPFGVVSAA 132

Query: 137 EFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTM-------- 188
           EF+GI+LF+VFI WAV +YT++N SLL+EF++P+K +   MLEL+GLR   +        
Sbjct: 133 EFIGILLFIVFIIWAVCSYTLKNFSLLAEFQLPSKLECYLMLELSGLRFGLIGLFCLAFL 192

Query: 189 -----YGWDILRWCSLRFTG---------------------YFMIAWDIQGRLVQELLAW 222
                 G  +LR   + F                       +++IAW + GRL+QE+L W
Sbjct: 193 FLPIARGSVLLRLVDIPFEHATKYHVWLGHLTMLLFTLHGLFYVIAWAMDGRLLQEILEW 252

Query: 223 RNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFS 282
           + IG+AN  GVISL+AGL+MW TS  PVRK +F+LFFYTHQLYVVFVVFLALHVGDF+FS
Sbjct: 253 KEIGVANLAGVISLIAGLLMWVTSLSPVRKQYFELFFYTHQLYVVFVVFLALHVGDFIFS 312

Query: 283 MAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVR 342
           MAAGGIFLF+LDRFLRFCQSRRTVD++SA+ LPCGT+ELVLSKP NLRYNALSF FLQV+
Sbjct: 313 MAAGGIFLFMLDRFLRFCQSRRTVDIISATYLPCGTLELVLSKPGNLRYNALSFIFLQVK 372

Query: 343 ELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPP----- 397
           ELSWLQWHPFSVSSSPL+GKYH S+LIKVLGEWTE LR  I +  +   ++   P     
Sbjct: 373 ELSWLQWHPFSVSSSPLDGKYHLSILIKVLGEWTEKLRGNISNFCKEKQELPFQPHSKIT 432

Query: 398 -PVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGI 431
             V  P GH  P H        LMYENL+LVAGGI
Sbjct: 433 ASVEGPYGHESPYH--------LMYENLVLVAGGI 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057952|ref|XP_002299406.1| predicted protein [Populus trichocarpa] gi|222846664|gb|EEE84211.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 267/472 (56%), Positives = 340/472 (72%), Gaps = 52/472 (11%)

Query: 1   MDEHSVHKPLLNGSVDAVHYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSEL 60
           MDE+SV +PLL   +  +  K+T L+VS++KW+LKILMW IFVAW+ +IFL+P++FG+ L
Sbjct: 1   MDENSVQEPLL---LSEISVKKTSLFVSSVKWILKILMWAIFVAWIGVIFLFPTQFGNGL 57

Query: 61  TQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENFERKKAPKHPRFRLW 120
            +K+  AT+G   GITGS+FL+ SGP+ +IAFL+I HLIISG+E F++KK+ KHP  RLW
Sbjct: 58  LEKYIHATTGNPCGITGSLFLVLSGPVLVIAFLSIFHLIISGDEEFQQKKSSKHPGVRLW 117

Query: 121 TFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLEL 180
           TFP LVDGPFGVVSAAEF+GI+LFVV++ WA+Y Y +++++ +S   +   E+SI  L++
Sbjct: 118 TFPFLVDGPFGVVSAAEFIGILLFVVYVIWALYAYIIQSLNRISGEDLTLMEESILFLKM 177

Query: 181 TGLRLDTM-------------YGWDILRWCSLRF---TGY------------------FM 206
            G  L +M              G  +LR+ ++ F   T Y                  ++
Sbjct: 178 MGGHLGSMGLYCMAFLFLPVARGSVLLRFINIPFEHATRYHVWLGHLTMVLFTLHGLLYV 237

Query: 207 IAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYV 266
           + W ++G L+ +LL+W++IG+A  PGVISL+AGL+MW TS  PVRK  F+LFFYTHQLYV
Sbjct: 238 VGWAMEGNLLHKLLSWKDIGVAILPGVISLVAGLLMWVTSLPPVRKWNFELFFYTHQLYV 297

Query: 267 VFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKP 326
           VFV+ LALHVGDF+FSMAAGGIFLF+LDRFLR CQSRRTVD++SA  LPCGTVELVLSKP
Sbjct: 298 VFVLGLALHVGDFIFSMAAGGIFLFMLDRFLRLCQSRRTVDIISAKSLPCGTVELVLSKP 357

Query: 327 ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK 386
            NLRYNALSF FLQ+RELSWLQWHPFSVSSSPL+GKYH S+LIKVLGEWT  LR  I++ 
Sbjct: 358 GNLRYNALSFVFLQIRELSWLQWHPFSVSSSPLDGKYHLSILIKVLGEWTARLRGSIMNI 417

Query: 387 SESDSQVGPPPPVPP-------PEGHPPPVHPPQGPVRNLMYENLILVAGGI 431
           SE++    P  P P        P GH  P H        LMYENLILVAGGI
Sbjct: 418 SEAEQPASPSQPRPKITASVEGPYGHEAPYH--------LMYENLILVAGGI 461

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555827|ref|XP_003546231.1| PREDICTED: probable ferric reductase transmembrane component-like [Glycine max]

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/468 (55%), Positives = 323/468 (69%), Gaps = 46/468 (9%)

Query: 1   MDEHSV-HKPLLNGSVDAVHYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFGSE 59
           M+++SV + PLL+   D    K T   VSA KW LK L+ VIFV W   IF  P++  +E
Sbjct: 1   MEKNSVDYSPLLSPRGDETAIKTTSFLVSATKWTLKTLILVIFVLWTTFIFSLPAKPVNE 60

Query: 60  LTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENFERKKAPKHPRFRL 119
           L  K+      T FG+TGS+FL+F+ PI IIAFLAIAHLI++GE+  + KK  K PRFRL
Sbjct: 61  LFSKWNDLNRDTPFGVTGSIFLVFTAPILIIAFLAIAHLILTGEDQLQGKKTSKLPRFRL 120

Query: 120 WTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPT-KEQSIWML 178
           WTFPVLV GPFGVVSA E +GIVL ++++ WA+Y YT+R +  +SEF + + +++SI M 
Sbjct: 121 WTFPVLVKGPFGVVSATELIGIVLVLLYVIWALYAYTVRALDFISEFDVSSFRDKSIIMF 180

Query: 179 ELTGLRLDTM-------------YGWDILRWCSLRF---TGY------------------ 204
           ++ GLR   +              G  +LR+  + F   T Y                  
Sbjct: 181 KVMGLRTGAIGLMCLAFLFIPVSRGSVLLRYIDIPFEHATRYHVWLGHLTMVIFTVHGLL 240

Query: 205 FMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQL 264
           +++AW ++G LVQEL+ W++IG+AN PGVISLLAGL+MW TS   VR   F+LFFYTHQL
Sbjct: 241 YVVAWAMEGHLVQELVQWKDIGVANLPGVISLLAGLLMWVTSLPGVRTWNFELFFYTHQL 300

Query: 265 YVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLS 324
           YVVF+VFLALHVGDFVF+MAAGGIFLF+LDRFLRFCQSRRTV+V+S+ CLPCGTVELVLS
Sbjct: 301 YVVFIVFLALHVGDFVFTMAAGGIFLFVLDRFLRFCQSRRTVNVISSRCLPCGTVELVLS 360

Query: 325 KPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 384
           KP +LRYNALSF F+QVRELSWLQWHPFSVSSSPL+GK H ++LIKVLG+WTE LR  I 
Sbjct: 361 KPQSLRYNALSFIFVQVRELSWLQWHPFSVSSSPLDGKNHLAILIKVLGKWTEKLRHRIT 420

Query: 385 S-KSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGI 431
              ++ DS V     V  P GH  P H        LMYENLILVAGGI
Sbjct: 421 DVDAQKDSSV-ITTSVEGPYGHEVPYH--------LMYENLILVAGGI 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795741|ref|XP_002865755.1| ATFRO7/FRO7 [Arabidopsis lyrata subsp. lyrata] gi|297311590|gb|EFH42014.1| ATFRO7/FRO7 [Arabidopsis lyrata subsp. lyrata]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/445 (57%), Positives = 310/445 (69%), Gaps = 52/445 (11%)

Query: 31  KWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAII 90
           KW+LK++M VIFV WV  + +YP   G ++   +   +S T+FGITGSMFLIFSGPI +I
Sbjct: 26  KWILKVVMSVIFVTWVVFLMMYPGSLGDQVLTNWRAISSNTLFGITGSMFLIFSGPILVI 85

Query: 91  AFLAIAHLIISGEEN-FERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIF 149
           A LA  +LIISGEE  F +KK  K PRFRLWTFPVLVDGPFGVVSAAEF+GI++F VF  
Sbjct: 86  AVLASLYLIISGEERVFTKKKISKFPRFRLWTFPVLVDGPFGVVSAAEFLGIMVFSVFFL 145

Query: 150 WAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTM-------------YGWDILRW 196
           WA+Y YT+RN+++L  F +  K +SI++LELTGLR   +              G  +LR 
Sbjct: 146 WAIYAYTLRNLNVLEYFHVLPKNRSIFLLELTGLRFGMIGLLCMVFLFLPISRGSILLRL 205

Query: 197 CSLRF---TGY------------------FMIAWDIQGRLVQELLAWRNIGIANFPGVIS 235
             + F   T Y                  +++ W IQG+L++ L  W++ GIA  PGVIS
Sbjct: 206 IDIPFEHATRYHVWLGHITMAFFSLHGLCYVVGWTIQGQLLELLFEWKDTGIAVLPGVIS 265

Query: 236 LLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDR 295
           L+AGL+MW TS H VRK +F+LFFYTHQLY+VFVVFLALHVGD++FS+ AGGIFLFILDR
Sbjct: 266 LVAGLLMWVTSLHTVRKFYFELFFYTHQLYIVFVVFLALHVGDYLFSIVAGGIFLFILDR 325

Query: 296 FLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVS 355
           FLRFCQSRRTVDV+SA  LPCGT+ELVLSKP N+RYNALSF FLQVRELSWLQWHPFSVS
Sbjct: 326 FLRFCQSRRTVDVISAKSLPCGTLELVLSKPPNMRYNALSFIFLQVRELSWLQWHPFSVS 385

Query: 356 SSPLEGKYHSSVLIKVLGEWTENLRDYI--LSKSESDSQVGPPPPVPP-------PEGHP 406
           SSPL+G +H +VLIKVLG WT  LRD +  L ++E+  Q+  P   P        P GH 
Sbjct: 386 SSPLDGNHHVAVLIKVLGGWTAKLRDQLSNLYEAENQDQLISPDSYPKITTCVEGPYGHE 445

Query: 407 PPVHPPQGPVRNLMYENLILVAGGI 431
            P H        L YENL+LVAGGI
Sbjct: 446 SPYH--------LAYENLVLVAGGI 462

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795739|ref|XP_002865754.1| ATFRO6/FRO6 [Arabidopsis lyrata subsp. lyrata] gi|297311589|gb|EFH42013.1| ATFRO6/FRO6 [Arabidopsis lyrata subsp. lyrata]

 Score =  474 bits (1220), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/476 (55%), Positives = 320/476 (67%), Gaps = 58/476 (12%)

Query: 1   MDEHSVHKPLLNGSVDAVHYKQTPLYVSALKWVLKILMWVIFVAWVA-LIFLYPSEFGSE 59
           MD+H    PLL+    +     + +  S+LKWVLK++M +IFV W+  L+ LYP + G +
Sbjct: 1   MDDHK--TPLLSKDSSSSSSSTSSVVTSSLKWVLKVVMSMIFVTWIVFLMILYPEQLGDD 58

Query: 60  LTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEEN-FERKKAPKHPRFR 118
                T   S T  G TGSMFLIFSGPI +IA LA  +LIISGE+  F + K  K PRFR
Sbjct: 59  F---LTVVASKTFLGTTGSMFLIFSGPILVIAVLASLYLIISGEDKVFTKNKISKFPRFR 115

Query: 119 LWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWML 178
           LWTFPVLVDGPFGVVSAAEF+GI++F VF  WA+Y YT+RN+ LL  F +  K +SI +L
Sbjct: 116 LWTFPVLVDGPFGVVSAAEFLGIMVFSVFFLWAIYAYTLRNLDLLERFHVLPKNRSILLL 175

Query: 179 ELTGLRLDTM-------------YGWDILRWCSLRF---TGY------------------ 204
           E+TGLRL  +              G  +LR   + F   T Y                  
Sbjct: 176 EVTGLRLGVIGLLCMVFLFLPISRGSILLRLIDIPFEHATRYHVWLGHITMAFFSLHGLC 235

Query: 205 FMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQL 264
           +++ W IQG+L++ + +W  IGIA  PGVISL+AGL+MW TS H VRKH+F+LFFYTHQL
Sbjct: 236 YVVGWTIQGQLLELIFSWNAIGIAVLPGVISLVAGLLMWVTSLHTVRKHYFELFFYTHQL 295

Query: 265 YVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLS 324
           Y+VFVVFLALHVGD++FS+ AGGIFLFILDRFLRFCQSRRTVDV+SA  LPCGT+ELVLS
Sbjct: 296 YIVFVVFLALHVGDYLFSIVAGGIFLFILDRFLRFCQSRRTVDVISAKSLPCGTLELVLS 355

Query: 325 KPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYI- 383
           KP N+RYNALSF FLQVRELSWLQWHPFSVSSSPL+G +H +VLIKVLG WT  LRD + 
Sbjct: 356 KPPNMRYNALSFIFLQVRELSWLQWHPFSVSSSPLDGNHHVAVLIKVLGGWTAKLRDQLS 415

Query: 384 -LSKSESDSQVGPPPPVPP-------PEGHPPPVHPPQGPVRNLMYENLILVAGGI 431
            L ++E+  Q+  P   P        P GH  P H        L YENL+LVAGGI
Sbjct: 416 NLYEAENQDQLISPDSYPKITTCVEGPYGHESPYH--------LAYENLVLVAGGI 463

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532942|ref|XP_003535028.1| PREDICTED: uncharacterized protein LOC100804994 [Glycine max]

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 257/469 (54%), Positives = 318/469 (67%), Gaps = 47/469 (10%)

Query: 1   MDEHSV-HKPLLN--GSVDAVHYKQTPLYVSALKWVLKILMWVIFVAWVALIFLYPSEFG 57
           M+++S+ + PLL+  G  +      +PL VSA KW LK L+ +IFV W A IF  P++  
Sbjct: 1   MEKNSLDYSPLLSPRGDENGSETTASPL-VSATKWTLKTLILMIFVLWAAFIFFLPAKPV 59

Query: 58  SELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENFERKKAPKHPRF 117
           +EL  K+      T FG+TGS+FL+F+ PI IIAFLAIAH I++GE+    KK  K PRF
Sbjct: 60  NELFSKWNDLNRDTPFGVTGSIFLVFTAPILIIAFLAIAHQILTGEDQLHEKKTSKLPRF 119

Query: 118 RLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPT-KEQSIW 176
           RLWTFPV V GPFGVVSA E +GIVL ++++ WA+Y YT+R +  +SEF +P+ +++SI 
Sbjct: 120 RLWTFPVFVKGPFGVVSATELIGIVLVLLYVIWALYAYTVRALDFISEFDVPSFRDKSII 179

Query: 177 MLELTGLRLDTM-------------YGWDILRWCSLRF---TGY---------------- 204
           M ++ GLR   +              G  +LR+  + F   T Y                
Sbjct: 180 MFKVMGLRTGAIGLMCLAFLFIPVSRGSVLLRYIDIPFEHATRYHVWLGHLTMVLFTVHG 239

Query: 205 --FMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTH 262
             ++IAW ++G LVQEL+ W++IG+AN PGVISLLAGL+MW TS   VR   F+LFFYTH
Sbjct: 240 LLYVIAWAMEGHLVQELIQWKDIGVANLPGVISLLAGLLMWVTSLPGVRTWNFELFFYTH 299

Query: 263 QLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELV 322
           QLYVVFVVFLALHVGDFVF+MAAGGIF F+LDRFLRFCQSRRTV+V+S+ CLPCGTVELV
Sbjct: 300 QLYVVFVVFLALHVGDFVFTMAAGGIFFFVLDRFLRFCQSRRTVNVISSRCLPCGTVELV 359

Query: 323 LSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDY 382
           LSKP +LRYNALSF F+QVRELSWLQWHPFSVSSSPL+GK H +VLIKVLG+WTE LR  
Sbjct: 360 LSKPQSLRYNALSFIFVQVRELSWLQWHPFSVSSSPLDGKNHLAVLIKVLGKWTEKLRQR 419

Query: 383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGI 431
           I               V  P GH  P H        LMYENLILVAGGI
Sbjct: 420 ITDVDAQKDSCVITTSVEGPYGHEVPYH--------LMYENLILVAGGI 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695741|ref|NP_199785.2| ferric reduction oxidase 7 [Arabidopsis thaliana] gi|122216266|sp|Q3KTM0.1|FRO7_ARATH RecName: Full=Ferric reduction oxidase 7, chloroplastic; Short=AtFRO7; AltName: Full=Ferric-chelate reductase 7; Flags: Precursor gi|62638009|gb|AAX92640.1| FRO1-like protein [Arabidopsis thaliana] gi|110742441|dbj|BAE99139.1| FRO1-like protein [Arabidopsis thaliana] gi|332008469|gb|AED95852.1| ferric reduction oxidase 7 [Arabidopsis thaliana]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/446 (56%), Positives = 309/446 (69%), Gaps = 52/446 (11%)

Query: 30  LKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIAI 89
           LKW+LK++M VIFV WV  + +YP   G ++   +   +S T+FG+TGSMFLIFSGPI +
Sbjct: 31  LKWILKVVMSVIFVTWVVFLMMYPGSLGDQILTNWRAISSNTLFGLTGSMFLIFSGPILV 90

Query: 90  IAFLAIAHLIISGEEN-FERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFI 148
           IA LA  +LIISGEE  F +KK  K PRFRLWTFPVLVDGPFGVVSAAEF+GI++F VF 
Sbjct: 91  IAILASLYLIISGEETVFTKKKITKFPRFRLWTFPVLVDGPFGVVSAAEFLGIMVFSVFF 150

Query: 149 FWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTM-------------YGWDILR 195
            WA+Y YT+RN+++L  F +    +SI++LELTGLR   +              G  +LR
Sbjct: 151 LWAIYAYTLRNLNVLDYFHVLPNNRSIFLLELTGLRFGMIGLLCMVFLFLPISRGSILLR 210

Query: 196 WCSLRF---TGY------------------FMIAWDIQGRLVQELLAWRNIGIANFPGVI 234
              + F   T Y                  +++ W IQG+L++ L  W+  GIA  PGVI
Sbjct: 211 LIDIPFEHATRYHVWLGHITMTFFSLHGLCYVVGWTIQGQLLELLFEWKATGIAVLPGVI 270

Query: 235 SLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILD 294
           SL+AGL+MW TS H VRK++F+LFFYTHQLY+VFVVFLALHVGD++FS+ AGGIFLFILD
Sbjct: 271 SLVAGLLMWVTSLHTVRKNYFELFFYTHQLYIVFVVFLALHVGDYLFSIVAGGIFLFILD 330

Query: 295 RFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSV 354
           RFLRF QSRRTVDV+SA  LPCGT+ELVLSKP N+RYNALSF FLQV+ELSWLQWHPFSV
Sbjct: 331 RFLRFYQSRRTVDVISAKSLPCGTLELVLSKPPNMRYNALSFIFLQVKELSWLQWHPFSV 390

Query: 355 SSSPLEGKYHSSVLIKVLGEWTENLRDYI--LSKSESDSQVGPPPPVPP-------PEGH 405
           SSSPL+G +H +VLIKVLG WT  LRD +  L ++E+  Q+  P   P        P GH
Sbjct: 391 SSSPLDGNHHVAVLIKVLGGWTAKLRDQLSTLYEAENQDQLISPESYPKITTCVEGPYGH 450

Query: 406 PPPVHPPQGPVRNLMYENLILVAGGI 431
             P H        L YENL+LVAGGI
Sbjct: 451 ESPYH--------LAYENLVLVAGGI 468

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	840
TAIR|locus:2157032	747	FRO7 "ferric reduction oxidase	0.361	0.406	0.590	1.2e-211
TAIR|locus:2157027	738	FRO6 "ferric reduction oxidase	0.361	0.411	0.590	1.8e-208
TAIR|locus:2025351	725	FRO2 "AT1G01580" [Arabidopsis	0.217	0.252	0.393	3.3e-59
TAIR|locus:2178677	699	FRO4 "ferric reduction oxidase	0.251	0.301	0.356	3.6e-59
TAIR|locus:2025366	704	FRO1 "AT1G01590" [Arabidopsis	0.219	0.261	0.414	2.4e-58
TAIR|locus:2157697	728	FRO8 "ferric reduction oxidase	0.270	0.311	0.333	7.3e-44
ZFIN|ZDB-GENE-040426-1380	571	cybb "cytochrome b-245, beta p	0.090	0.133	0.316	3.8e-19
RGD|620598	563	Nox1 "NADPH oxidase 1" [Rattus	0.090	0.134	0.329	3.3e-18
DICTYBASE|DDB_G0291117	1142	noxC "flavocytochrome b large	0.192	0.141	0.325	6.2e-18
DICTYBASE|DDB_G0289653	517	noxA "flavocytochrome b large	0.178	0.290	0.251	7.9e-18

TAIR|locus:2157032 FRO7 "ferric reduction oxidase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 1.2e-211, Sum P(3) = 1.2e-211
 Identities = 183/310 (59%), Positives = 234/310 (75%)

Query:   536 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 595
             KIT  VEGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK CLP  VL+V
Sbjct:   439 KITTCVEGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKDCLPGKVLVV 498

Query:   596 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY-P 654
             WA+K S+ELSLLS     SIC FFS KLNLE  IYVTR++EP LE+G +HK +  S+  P
Sbjct:   499 WAIKNSDELSLLSAIDIPSICHFFSKKLNLEIHIYVTRQSEPCLEDGMVHKVVHPSVKTP 558

Query:   655 VPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLAC 714
               +GC+MSVLVGTG+N+WSGLY+I ST+GFI ++ L++I Y+N +NI +WWYKGLLF+ C
Sbjct:   559 WTNGCSMSVLVGTGDNIWSGLYLIISTIGFIAMITLVDIFYINKYNITTWWYKGLLFVVC 618

Query:   715 MVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIR----KKDTK 770
             MV  VLIFGG V+ FWH WE K+   E   +D +++ N +     +  +++    ++D +
Sbjct:   619 MVASVLIFGGLVVVFWHRWEHKTGEVEANGNDKVDL-NGEETHNPSAAELKGLAIEEDVQ 677

Query:   771 SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPI 830
             + T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+
Sbjct:   678 NYTTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPL 737

Query:   831 FHFHSHSFDL 840
             FHF+SHSFDL
Sbjct:   738 FHFNSHSFDL 747

GO:0005506 "iron ion binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000293 "ferric-chelate reductase activity" evidence=IMP;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

TAIR|locus:2157027 FRO6 "ferric reduction oxidase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 1.8e-208, Sum P(3) = 1.8e-208
 Identities = 183/310 (59%), Positives = 235/310 (75%)

Query:   536 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 595
             KIT  VEGPYGHE PYHL YENL+LVAGGIGI+PF AILSDILHR  +GK+CLP  VL+V
Sbjct:   430 KITTCVEGPYGHESPYHLAYENLVLVAGGIGITPFFAILSDILHRKRDGKACLPSKVLVV 489

Query:   596 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI-YP 654
             WA+K S+ELSLLS     SICPFFS KLNLE  IY+TR++EP LE+G +HK +  S+  P
Sbjct:   490 WAIKNSDELSLLSAIDIPSICPFFSKKLNLEIHIYITRQSEPRLEDGMVHKVVHPSVKLP 549

Query:   655 VPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLAC 714
               +GC+MSVLVGTG+N+WSGLY+I ST+GFI ++ LL+I Y+  +NI +WWYKGLLF+ C
Sbjct:   550 RTNGCSMSVLVGTGDNIWSGLYLIISTIGFISMITLLDIFYIKRYNITTWWYKGLLFVGC 609

Query:   715 MVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIR----KKDTK 770
             MV  VLIFGG V+ FWH WE K+   E   +D +++ N +     +  +++    ++D +
Sbjct:   610 MVASVLIFGGLVVVFWHRWEHKTGEVEANGNDKVDL-NGEETHNPSAAELKGLAIEEDVQ 668

Query:   771 SSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPI 830
             + T I YG+RP F+EIF S + KWG VDVGVIVCGP +LQ++VAKEIRSHS+ R  + P+
Sbjct:   669 NYTTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHSIWRSANHPL 728

Query:   831 FHFHSHSFDL 840
             FHF+SHSFDL
Sbjct:   729 FHFNSHSFDL 738

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2025351 FRO2 "AT1G01580" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 3.3e-59, Sum P(3) = 3.3e-59
 Identities = 74/188 (39%), Positives = 110/188 (58%)

Query:   205 FMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQL 264
             ++I W     + Q ++ W   G++N  G I+L AGL+MWAT++  +R+ FF++FFYTH L
Sbjct:   237 YIIYWASMHEISQ-MIMWDTKGVSNLAGEIALAAGLVMWATTYPKIRRRFFEVFFYTHYL 295

Query:   265 YVVFVVFLALHVG-DFVFSMAAGGXXXXXXXXXXXXCQSRRTVDVLSASCLPCGTVELVL 323
             Y+VF++F  LHVG  F F +A  G             QSR  V +L+A  LP  T+EL  
Sbjct:   296 YIVFMLFFVLHVGISFSF-IALPGFYIFLVDRFLRFLQSRENVRLLAARILPSDTMELTF 354

Query:   324 SKPANLRYNALSFFFLQVRELSWLQWHPFSV-SSSPLEGKYHSSVLIKVLGEWTENLRDY 382
             SK + L Y+  S  F+ +  +S LQWHPF++ SSS LE +   S++IK  G+W+  L   
Sbjct:   355 SKNSKLVYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPE-KLSIVIKKEGKWSTKLHQR 413

Query:   383 ILSKSESD 390
             + S  + D
Sbjct:   414 LSSSDQID 421

GO:0000293 "ferric-chelate reductase activity" evidence=ISS;IDA;IMP

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0015688 "iron chelate transport" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0055072 "iron ion homeostasis" evidence=IMP

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2178677 FRO4 "ferric reduction oxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
 Identities = 78/219 (35%), Positives = 113/219 (51%)

Query:   177 MLELTGLRLDTM--YG-W--DILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFP 231
             +L L GL  ++   Y  W   +  +C L  T  F+I W +  +L+ E  AW    + N  
Sbjct:   177 ILPLVGLTSESSIKYHIWLGHVSNFCFLVHTVVFLIYWAMINKLM-ETFAWNPTYVPNLA 235

Query:   232 GVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGXXXX 291
             G I+++ G+ MW TS    R+  F++FFYTH LY +++VF  +HVGD  F M        
Sbjct:   236 GTIAMVIGIAMWVTSLPSFRRKKFEIFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLF 295

Query:   292 XXXXXXXXCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHP 351
                      QS +   ++SA  LP   +EL  SK   L Y   S  FL V  +S +QWHP
Sbjct:   296 FIDRYLRFLQSTKRSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKIQWHP 355

Query:   352 FSV-SSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSES 389
             F++ SSS LE K   SV+I+  G WT+ L  ++ S  +S
Sbjct:   356 FTITSSSNLE-KDTLSVVIRRQGSWTQKLYTHLSSSIDS 393

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

TAIR|locus:2025366 FRO1 "AT1G01590" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 2.4e-58, Sum P(3) = 2.4e-58
 Identities = 78/188 (41%), Positives = 110/188 (58%)

Query:   204 YFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQ 263
             YF I W  + +LV ++L W    ++N  G I+L+AGLMMW T++  +R+  F++FFY+H 
Sbjct:   227 YF-IYWISKNQLVSKMLEWDRTAVSNLAGEIALVAGLMMWVTTYPKIRRRLFEVFFYSHY 285

Query:   264 LYVVFVVFLALHVGDFVFSMAAGGXXXXXXXXXXXXCQSRRTVDVLSASCLPCGTVELVL 323
             LY+VF++F   HVG     +   G             QSR  V ++SA  LPC TVEL  
Sbjct:   286 LYIVFMLFFVFHVGISHALIPLPGFYIFLVDRFLRFLQSRNNVKLVSARVLPCDTVELNF 345

Query:   324 SKPANLRYNALSFFFLQVRELSWLQWHPFSV-SSSPLEGKYHSSVLIKVLGEWTENLRDY 382
             SK   L Y+  S  F+ +  +S LQWHPF++ SSS LE +   SV+IK  G+W+  L D 
Sbjct:   346 SKNPMLMYSPTSTMFVNIPSISKLQWHPFTIISSSKLEPET-LSVMIKSQGKWSTKLYD- 403

Query:   383 ILSKSESD 390
             +LS S SD
Sbjct:   404 MLSSSSSD 411

GO:0000293 "ferric-chelate reductase activity" evidence=ISS;IMP

GO:0005506 "iron ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2157697 FRO8 "ferric reduction oxidase 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.3e-44, Sum P(3) = 7.3e-44
 Identities = 78/234 (33%), Positives = 111/234 (47%)

Query:   198 SLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQL 257
             SL   G  +  W I   + +E+  W+  G     G+ISL+ GL+MW TS   +R+  F++
Sbjct:   206 SLVHGGSTLFIWTITHHIEEEIWKWQRTGRVYVAGLISLVTGLLMWITSLPQIRRKNFEV 265

Query:   258 FFYTHQLYVVFVVFLALHVGDFVFSMAAGGXXXXXXXXXXXXCQSRRTVDVLSASCLPCG 317
             F+YTH LY+VF+V    H GD  F     G             QSR    +LSA+   C 
Sbjct:   266 FYYTHHLYIVFLVAFLFHAGDRHFYWVLPGMFLFGLDKILRIVQSRSESCILSANLFSCK 325

Query:   318 TVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTE 377
              +ELVL K   L Y   SF FL +  +S  QWHPFS+ SS    K+  S+++K  G+WT 
Sbjct:   326 AIELVLPKDPMLNYAPSSFIFLNIPLVSRFQWHPFSIISSSSVDKHSLSIMMKCEGDWTN 385

Query:   378 NLRDYILSKSESDSXXXXXXXXXXXXXXXXXXXXXXXXXRNLMYENLILVAGGI 431
             ++ + I   +  ++                           L Y+NL LVAGGI
Sbjct:   386 SVYNKIEEAANCENKINNIIVRVEGPYGPASVDF-------LRYDNLFLVAGGI 432

GO:0005506 "iron ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-040426-1380 cybb "cytochrome b-245, beta polypeptide (chronic granulomatous disease)" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 3.8e-19, Sum P(4) = 3.8e-19
 Identities = 25/79 (31%), Positives = 45/79 (56%)

Query:   301 QSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLE 360
             +S++ V +      P  T+EL + K    +     + F+    +S L+WHPF+++S+P E
Sbjct:   294 RSQQKVVITKVVTHPSKTLELQMKKKG-FKMEVGQYIFMMCPSISQLEWHPFTLTSAPEE 352

Query:   361 GKYHSSVLIKVLGEWTENL 379
                H SV I+++G+WT+ L
Sbjct:   353 D--HFSVHIRIVGDWTQAL 369

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|620598 Nox1 "NADPH oxidase 1" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 3.3e-18, Sum P(4) = 3.3e-18
 Identities = 26/79 (32%), Positives = 44/79 (55%)

Query:   301 QSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLE 360
             +SR+ V +      PC  +EL + K          + F+    +S+L+WHPF+++S+P E
Sbjct:   289 RSRQKVVITKVVMHPCKVLELQMRK-RGFTMGIGQYIFVNCPSISFLEWHPFTLTSAPEE 347

Query:   361 GKYHSSVLIKVLGEWTENL 379
               +  S+ I+  G+WTENL
Sbjct:   348 EFF--SIHIRAAGDWTENL 364

GO:0000302 "response to reactive oxygen species" evidence=IDA

GO:0001525 "angiogenesis" evidence=ISO

GO:0003081 "regulation of systemic arterial blood pressure by renin-angiotensin" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

GO:0006801 "superoxide metabolic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0007165 "signal transduction" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0009268 "response to pH" evidence=ISO

GO:0010575 "positive regulation vascular endothelial growth factor production" evidence=ISO

GO:0015992 "proton transport" evidence=ISO

GO:0016175 "superoxide-generating NADPH oxidase activity" evidence=ISO;IDA;TAS

GO:0016477 "cell migration" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030171 "voltage-gated proton channel activity" evidence=ISO

GO:0030198 "extracellular matrix organization" evidence=ISO

GO:0042554 "superoxide anion generation" evidence=ISO;IMP

GO:0042743 "hydrogen peroxide metabolic process" evidence=ISO

GO:0043020 "NADPH oxidase complex" evidence=ISO;IDA

GO:0045726 "positive regulation of integrin biosynthetic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048365 "Rac GTPase binding" evidence=ISO

GO:0048661 "positive regulation of smooth muscle cell proliferation" evidence=IMP

GO:0051454 "intracellular pH elevation" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0071438 "invadopodium membrane" evidence=IEA;ISO

GO:0072592 "oxygen metabolic process" evidence=ISO

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IMP

DICTYBASE|DDB_G0291117 noxC "flavocytochrome b large subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 184 (69.8 bits), Expect = 6.2e-18, Sum P(3) = 6.2e-18
 Identities = 58/178 (32%), Positives = 87/178 (48%)

Query:   222 WRNIGIANFPGVIS--LLAGLMMWAT-SFHPVRKHFFQLFFYTHQLYVVFVVFLALH--V 276
             W  I   + PGV    +++ L++ A  S   +RK  F+LF+Y+H L++ F V L LH  +
Sbjct:   713 WEMI-FNSLPGVTGFIMISFLIIMAILSLKIIRKSNFELFYYSHHLFIGFYVLLILHGTM 771

Query:   277 G-----DFVFSMAAGGXXXXXXXXXXXXCQSRRTVDVLSASCLPCGTV-ELVLSKPANLR 330
             G      F       G             ++ R V+VL   CL    V  L  SKP +  
Sbjct:   772 GWIRPPTFWKWFIVPGFFYTVDRSFRLFKRTHR-VEVLDY-CLKNERVINLTFSKPPSFD 829

Query:   331 YNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSE 388
             Y    +  + V  +S LQWHPF+++SSPLE K +  V I+V G WT+ L  ++  K +
Sbjct:   830 YKPGQYLLINVPHISKLQWHPFTMTSSPLEDKIY--VHIRVTGNWTKKLFRWLSIKKQ 885

GO:0050661 "NADP binding" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

GO:0043020 "NADPH oxidase complex" evidence=ISS

GO:0042554 "superoxide anion generation" evidence=ISS

GO:0030587 "sorocarp development" evidence=IMP

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0020037 "heme binding" evidence=ISS

GO:0016175 "superoxide-generating NADPH oxidase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

DICTYBASE|DDB_G0289653 noxA "flavocytochrome b large subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 153 (58.9 bits), Expect = 7.9e-18, Sum P(3) = 7.9e-18
 Identities = 40/159 (25%), Positives = 73/159 (45%)

Query:   227 IANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAA- 285
             +A + G +  +  ++M+ ++   +R+  F+ F+YTH L+VVF   L +H    +    + 
Sbjct:   155 LAGWTGHVVCIVMVLMYTSAVESIRRPMFEGFWYTHHLFVVFFGLLVVHGLHSILEPTSF 214

Query:   286 -----GGXXXXXXXXXXXXCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQ 340
                  G              +S++T  ++ A   P   +E V  K    +Y    + FL 
Sbjct:   215 WKWVIGPCALYIVERLIRLLRSKKTTMLIQARIHPSRVIE-VRMKTERFKYKPGQYLFLN 273

Query:   341 VRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL 379
                ++  +WHPF+++S+P E     S  I V+G WT  L
Sbjct:   274 CPTIAQNEWHPFTITSAPEED--FVSCHINVVGNWTGKL 310

GO:0050661 "NADP binding" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

GO:0043020 "NADPH oxidase complex" evidence=ISS

GO:0042554 "superoxide anion generation" evidence=ISS

GO:0030587 "sorocarp development" evidence=IMP

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0020037 "heme binding" evidence=ISS

GO:0016175 "superoxide-generating NADPH oxidase activity" evidence=IGI

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	840
PLN02292	702	PLN02292, PLN02292, ferric-chelate reductase	3e-62
PLN02844	722	PLN02844, PLN02844, oxidoreductase/ferric-chelate	4e-59
PLN02631	699	PLN02631, PLN02631, ferric-chelate reductase	3e-49
PLN02631	699	PLN02631, PLN02631, ferric-chelate reductase	7e-26
PLN02292	702	PLN02292, PLN02292, ferric-chelate reductase	3e-25
PLN02844	722	PLN02844, PLN02844, oxidoreductase/ferric-chelate	7e-23
cd06186	210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	3e-17
cd06186	210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	2e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-14
pfam08022	103	pfam08022, FAD_binding_8, FAD-binding domain	1e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-13
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-12
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-11
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-11
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	1e-10
pfam08030	149	pfam08030, NAD_binding_6, Ferric reductase NAD bin	6e-10
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	8e-10
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-09
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-09
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-07
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-07
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	9e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-06
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	1e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-06
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-06
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-06
pfam01794	122	pfam01794, Ferric_reduct, Ferric reductase like tr	3e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	6e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-06
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	8e-06
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-05
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	1e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	1e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	2e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-05
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	2e-05
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	2e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
cd06195	241	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i	3e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	5e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	5e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	7e-05
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	8e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	9e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	1e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-04
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	1e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-04
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	1e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-04
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	2e-04
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	2e-04
pfam04621	336	pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain t	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-04
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	3e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	3e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	3e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	3e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	3e-04
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	3e-04
PHA03419	200	PHA03419, PHA03419, E4 protein; Provisional	3e-04
pfam11235	168	pfam11235, Med25_SD1, Mediator complex subunit 25	3e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-04
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	4e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	4e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-04
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	4e-04
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	5e-04
pfam05044	908	pfam05044, Prox1, Homeobox prospero-like protein (	5e-04
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	5e-04
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	6e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	6e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	6e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	7e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	9e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	9e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.001
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.001
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.001
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.001
PRK08345	289	PRK08345, PRK08345, cytochrome-c3 hydrogenase subu	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
pfam05887	145	pfam05887, Trypan_PARP, Procyclic acidic repetitiv	0.002
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.002
PHA03282	540	PHA03282, PHA03282, envelope glycoprotein E; Provi	0.002
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	0.002
TIGR03354	396	TIGR03354, VI_FHA, type VI secretion system FHA do	0.002
pfam05110	1154	pfam05110, AF-4, AF-4 proto-oncoprotein	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.003
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.003
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	0.003
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.003
PHA01929	306	PHA01929, PHA01929, putative scaffolding protein	0.003
PHA01929	306	PHA01929, PHA01929, putative scaffolding protein	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.004

>gnl|CDD|215165 PLN02292, PLN02292, ferric-chelate reductase

 Score =  222 bits (568), Expect = 3e-62
 Identities = 137/445 (30%), Positives = 218/445 (48%), Gaps = 59/445 (13%)

Query: 30  LKWVLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRATSGT--IFGITGSMFLIFSGPI 87
           +K V+K LM VI +  + +  + P+     +     RA  G    FG  G   L++  P+
Sbjct: 11  IKGVIKFLMMVILMGTIVIWIMMPTSTYKTIWLPSMRAKLGKSTYFGAPGVNLLVYMFPM 70

Query: 88  AIIAFLAIAHLIISGEEN---FERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLF 144
            ++A L   +L +  +     F R+   K  +F     P+LV GP G+V+  E + + +F
Sbjct: 71  ILLACLGCIYLHLKKQTTVNQFNREVRKKGGKFGALRRPMLVKGPLGIVTVTEVMFLAMF 130

Query: 145 VVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWM--LELTGLRLDTMYG-------WDILR 195
           +  + W++  Y       ++     T  +S+W   L+   +RL  +         + + R
Sbjct: 131 MALLLWSLANYMYNTFVTITPQSAATDGESLWQARLDSIAVRLGLVGNICLAFLFYPVAR 190

Query: 196 WCSLR------------------------FTGY---FMIAWDIQGRLVQELLAWRNIGIA 228
             SL                         FT +   ++I W I    V ++L W   G++
Sbjct: 191 GSSLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYW-ISMNQVSQMLEWDRTGVS 249

Query: 229 NFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGI 288
           N  G I+L+AGL+MWAT++  +R+ FF++FFYTH LY+VF++F   HVG     ++  G 
Sbjct: 250 NLAGEIALVAGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVFHVGISFALISFPGF 309

Query: 289 FLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQ 348
           ++F++DRFLRF QSR  V ++SA  LPC TVEL  SK   L Y+  S  F+ +  +S LQ
Sbjct: 310 YIFLVDRFLRFLQSRNNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVNIPSISKLQ 369

Query: 349 WHPFSV-SSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPP 407
           WHPF++ SSS LE +   SV+IK  G+W+  L   + S  + D                 
Sbjct: 370 WHPFTITSSSKLEPE-KLSVMIKSQGKWSTKLYHMLSSSDQIDRLA-------------V 415

Query: 408 PVHPPQGPVRN--LMYENLILVAGG 430
            V  P GP     L +E+L++V+GG
Sbjct: 416 SVEGPYGPASTDFLRHESLVMVSGG 440

Length = 702

>gnl|CDD|215453 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase

 Score =  214 bits (547), Expect = 4e-59
 Identities = 141/444 (31%), Positives = 218/444 (49%), Gaps = 64/444 (14%)

Query: 33  VLKILMWVIFVAWVALIFLYPSEFGSELTQKFTRA---TSGTIFGITGSMFLIFSGPIAI 89
           VLK+LM +IF  W+AL  L P+      T+K+ +A      T+FG  G  F +++ P   
Sbjct: 9   VLKLLMILIFAGWIALWILKPTNL---WTRKWKQAEDSARHTVFGYYGLNFAVYTFPPIA 65

Query: 90  IAFLAIAHLIISGEENFERKKAPKHPRFRLWTF--PVLVDGPFGVVSAAEFVGIVLFVVF 147
           +A + + +L +  +E   R+ A    R        PV+V+   G++S  E + ++LF +F
Sbjct: 66  LAIIGLVYLSLLSQEPHRRRGA----RSATIGVSNPVIVNSFIGILSCLEILAVLLFFLF 121

Query: 148 IFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLDTMYG-----------WDILRW 196
           + W  Y     +   L    +P K  ++ + +L  LR+ T +G             +LR 
Sbjct: 122 LAWTFYARISNDFKKL----MPVKSLNLNLWQLKYLRVATRFGLLAEACLALLLLPVLRG 177

Query: 197 CSL-RFTG------------------YF--------MIAWDIQGRLVQELLAWRNIGIAN 229
            +L R  G                  +F        +  W I   +  E+  W+  G   
Sbjct: 178 LALFRLLGIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEIWKWQKTGRIY 237

Query: 230 FPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIF 289
             G I+L+ GL++W TS   +R+  F++F+YTH LY+VF++F   H GD  F M   GIF
Sbjct: 238 LAGEIALVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIF 297

Query: 290 LFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQW 349
           LF LD+ LR  QSR    +LSA   PC  +ELVL K   L+Y   S  F+++  +S  QW
Sbjct: 298 LFGLDKLLRIVQSRPETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQW 357

Query: 350 HPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPV 409
           HPFS++SS     +  SV+IK  G WT +L + I ++ +S++      PV         +
Sbjct: 358 HPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSETNQMNCIPV--------AI 409

Query: 410 HPPQGP--VRNLMYENLILVAGGI 431
             P GP  V  L Y++L+LVAGGI
Sbjct: 410 EGPYGPASVDFLRYDSLLLVAGGI 433

Length = 722

>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase

 Score =  185 bits (470), Expect = 3e-49
 Identities = 129/412 (31%), Positives = 200/412 (48%), Gaps = 54/412 (13%)

Query: 30  LKWVLKILMWVIFVAWVAL-IFLYPSEFGSELTQKFTRATSGTIFGITGSMFLIFSGPIA 88
           ++ ++K+LM V+F+ W+ + I +  + F S+ T K  +  + T FG  G+  ++ + P+ 
Sbjct: 4   MRSLVKMLMVVLFLGWIFVWIMISTNLFKSKWTPKLAKNLNTTYFGPQGTNLVLLTVPMM 63

Query: 89  IIAFLAIAHLIISGEENFERKKAPKHPRFRLWTFP------VLVDGPFGVVSAAEFVGIV 142
            IA L+  +L          +K P  P+ R W         ++V  P G+V+A E    +
Sbjct: 64  FIAVLSCVYLHT--------QKKPTQPQ-REWKLKRRMGRVIMVMNPLGIVTATELTFSL 114

Query: 143 LFVVFIFWAVYTYTMRNISL-----------LSEFR------------------IPTKEQ 173
           LFV  + W++Y Y   +  +            ++FR                   P    
Sbjct: 115 LFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRIGYVGHICWAFLFFPVTRA 174

Query: 174 SIWMLELTGLRLDTMYGWDIL-----RWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIA 228
           S  +L L GL  ++   + I       +  L  T  F+I W +  +L+ E  AW    + 
Sbjct: 175 ST-ILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLM-ETFAWNPTYVP 232

Query: 229 NFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGI 288
           N  G I+++ G+ MW TS    R+  F+LFFYTH LY +++VF  +HVGD  F M    I
Sbjct: 233 NLAGTIAMVIGIAMWVTSLPSFRRKKFELFFYTHHLYGLYIVFYVIHVGDSWFCMILPNI 292

Query: 289 FLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQ 348
           FLF +DR+LRF QS +   ++SA  LP   +EL  SK   L Y   S  FL V  +S LQ
Sbjct: 293 FLFFIDRYLRFLQSTKRSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQ 352

Query: 349 WHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSES--DSQVGPPPP 398
           WHPF+++SS    K   SV+I+  G WT+ L  ++ S  +S   S  GP  P
Sbjct: 353 WHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSSIDSLEVSTEGPYGP 404

Length = 699

>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase

 Score =  113 bits (284), Expect = 7e-26
 Identities = 94/321 (29%), Positives = 167/321 (52%), Gaps = 34/321 (10%)

Query: 537 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 596
           +  S EGPYG        + +LILV+GG GI+PF++++ +++ +     + LP +VL+V 
Sbjct: 394 LEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLP-DVLLVC 452

Query: 597 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY-PV 655
           + K  ++L+ L   +   I      +LNL    Y+TRE + P E  + H+ + +  + P 
Sbjct: 453 SFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYITREDKKP-ETTDDHRLLQTKWFKPQ 511

Query: 656 PSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWYKGLL 710
           P    +S ++G  N +W G+ ++SS V F++L+ ++   Y+ P +     I+++ Y+GL 
Sbjct: 512 PLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFSYRGLW 571

Query: 711 FLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQ------NVGTMAHNDI 764
            +   +G V IF  + I F  LW RK   +E  K+   +V + +      + G+  H   
Sbjct: 572 DM--FLGSVCIFISSSIVF--LW-RKKQNKEGDKESKKQVQSVEFQTPTSSPGSWFHGHE 626

Query: 765 RKKDT------KSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIR 818
           R+ ++        +T++ +GS+P+ K+I        G  DVGV+VCGP  ++  VAK I 
Sbjct: 627 RELESVPYQSIVQATSVHFGSKPNLKKILLEAE---GSEDVGVMVCGPRKMRHEVAK-IC 682

Query: 819 SHSLMRECHDPIFHFHSHSFD 839
           S  L +       HF + SF+
Sbjct: 683 SSGLAKN-----LHFEAISFN 698

Length = 699

>gnl|CDD|215165 PLN02292, PLN02292, ferric-chelate reductase

 Score =  111 bits (279), Expect = 3e-25
 Identities = 88/315 (27%), Positives = 156/315 (49%), Gaps = 38/315 (12%)

Query: 536 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 595
           ++  SVEGPYG      L +E+L++V+GG GI+PF++I+ D+++  +     +P+  LI 
Sbjct: 412 RLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLIC 471

Query: 596 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFI------YVTRETEPPLEEGELHKTMS 649
            A K S++LS+L     + I P    +  L +FI      +VTRE E  ++E   +  + 
Sbjct: 472 -AFKNSSDLSML-----DLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTGNMNII 525

Query: 650 SSIY--PVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPF----NIHS 703
            +++  P  S   +S ++G  + +W    + SS + FII++A++   ++ P     N ++
Sbjct: 526 KTLWFKPNLSDQPISPILGPNSWLWLAAILSSSFLIFIIIIAIITRYHIYPIDQNSNKYT 585

Query: 704 WWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHND 763
             YK L++L  +   V+      +    LW +K   +++ +    +VDN  +   +  + 
Sbjct: 586 LAYKSLIYLLVISISVVATSTAAM----LWNKKKYYKKSSQ----QVDNVDSPREIESSP 637

Query: 764 IRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLM 823
             ++     TNI YG RP+  ++            VGV+VCGP  ++  VAK I S  L 
Sbjct: 638 --QQLLVQRTNIHYGERPNLNKLLVGLKGS----SVGVLVCGPKKMRQKVAK-ICSSGLA 690

Query: 824 RECHDPIFHFHSHSF 838
                   HF S SF
Sbjct: 691 EN-----LHFESISF 700

Length = 702

>gnl|CDD|215453 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase

 Score =  104 bits (260), Expect = 7e-23
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 36/329 (10%)

Query: 537 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 596
           I  ++EGPYG      L Y++L+LVAGGIGI+PFL+IL +I    +  +   P+ V +++
Sbjct: 405 IPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIA-SQSSSRYRFPKRVQLIY 463

Query: 597 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSS-SIYPV 655
            VKKS ++ LL+      +    S++LNL+  ++VT+E +P     EL    S       
Sbjct: 464 VVKKSQDICLLNPISSLLLNQ-SSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNF 522

Query: 656 PSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYV-----NPFNIHSW------ 704
            + C+   + G  + +W    V  +++ F++ +  LN +++     +   +         
Sbjct: 523 STKCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFIPSEHKSHSGVKMAASGEMK 582

Query: 705 --------WYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNV 756
                   W   LL +   +  +     T +     W R    ++     S +       
Sbjct: 583 TAKEKTPSWVVDLLLIVSFIIAITC--STFVAIILRWRRL---KKEIPRVSQKQGIKPEE 637

Query: 757 GTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKE 816
           G+M     ++        I +G RP+F++IF    K+    D+GV+VCGP +++ SVA  
Sbjct: 638 GSM----EKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASM 693

Query: 817 IRSHSL-----MRECHDPIFHFHSHSFDL 840
            R  S              F FHS +F L
Sbjct: 694 CRLKSQCFNVGDDGKRKMYFSFHSLNFTL 722

Length = 722

>gnl|CDD|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 533 PPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 592
               +   VEGPYG      L Y+N++LVAGG GI+  L IL D+L R +  K+   R V
Sbjct: 84  GGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSS--KTSRTRRV 141

Query: 593 LIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR 633
            +VW V+   +L     ++ + +      +++ E  IYVTR
Sbjct: 142 KLVWVVRDREDLE----WFLDELRAAQELEVDGEIEIYVTR 178

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. Length = 210

>gnl|CDD|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 23/132 (17%)

Query: 305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKY 363
           TV++L  S      + L + KP   ++      +L    L S+ Q HPF+++SSP + + 
Sbjct: 3   TVELLPDS----DVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQD 58

Query: 364 HSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPV----PPPEGHPPPVHPPQGPVRNL 419
             S++I+    +T  L    L         G    V    P        +          
Sbjct: 59  TLSLIIRAKKGFTTRLLRKALKSPGG----GVSLKVLVEGPYGSSSEDLLS--------- 105

Query: 420 MYENLILVAGGI 431
            Y+N++LVAGG 
Sbjct: 106 -YDNVLLVAGGS 116

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. Length = 210

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 75.7 bits (186), Expect = 8e-14
 Identities = 50/168 (29%), Positives = 58/168 (34%), Gaps = 33/168 (19%)

Query: 395  PPPPVPPPEGHPPPVHP----PQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 450
            PPPP P PE  P  +      P GP            A   S A P    P P   P G 
Sbjct: 2701 PPPPPPTPEPAPHALVSATPLPPGPA----------AARQASPALP--AAPAPPAVPAGP 2748

Query: 451  PPPGPPLQEEGPP----PQGPHPPVPPPQGPPPPLPPPKGNLMYENL------------- 493
              PG P +   PP    P  P PP  P  GPP  L  P    + E+              
Sbjct: 2749 ATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808

Query: 494  IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 541
              V    +   P   P  P+PPP  + P  PPP   P  P   +  SV
Sbjct: 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV 2856

Length = 3151

>gnl|CDD|219702 pfam08022, FAD_binding_8, FAD-binding domain

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 306 VDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYH 364
           V     S LP   VEL++SKP    +Y    + F+    +S+LQ HPF+++S+P + K  
Sbjct: 4   VPKAKVSLLPDNVVELIVSKPKKPFKYKPGQYIFINFPPISFLQSHPFTITSAPEDDKL- 62

Query: 365 SSVLIKVLGEWTENLRDYILSKSESD 390
            SV IK  G WT+ L  Y+ S  E++
Sbjct: 63  -SVHIKAKGGWTKKLAKYLSSSPENN 87

Length = 103

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 73.4 bits (180), Expect = 5e-13
 Identities = 45/154 (29%), Positives = 52/154 (33%), Gaps = 22/154 (14%)

Query: 395  PPPPVPPP-EGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
            P  P+PPP    P    PP GP    +     +  GG     P    P   P    A P 
Sbjct: 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKP----AAPA 2879

Query: 454  GPPLQE-EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPP 512
             PP++    P           P   P   P P+               +   PQ  P PP
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQ---------------APPPPQPQPQPP 2924

Query: 513  VPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 546
             PPPQ  PP  PPP   P L PT   A    P G
Sbjct: 2925 -PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG 2957

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 71.7 bits (176), Expect = 1e-12
 Identities = 37/167 (22%), Positives = 47/167 (28%), Gaps = 14/167 (8%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
             P P P P   P     PQ P + ++    +       +  P +  P     PQG PP 
Sbjct: 128 TAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPR 187

Query: 454 GPPLQEEGPPPQGP----HPPVPPPQGPPPPLPPPKGNLMYE--------NLIVVAGGIS 501
                ++GPP Q P     P   P Q  P    P       +                  
Sbjct: 188 QAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQ 247

Query: 502 ETEPQVGPPPPVPPPQGSPPQRPPPSRH--PLLPPTKITASVEGPYG 546
                   PPP P P     Q P P     P   PT      +G   
Sbjct: 248 FPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNA 294

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 70.4 bits (172), Expect = 3e-12
 Identities = 45/154 (29%), Positives = 53/154 (34%), Gaps = 36/154 (23%)

Query: 396  PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGP---PLPVPPPQGAPP 452
            PP   P      P  P + PVR L              A P V        +PP Q   P
Sbjct: 2866 PPSRSPA---AKPAAPARPPVRRL--------------ARPAVSRSTESFALPPDQPERP 2908

Query: 453  PGPPL------QEEGPPPQGPHPPVPPPQGPPPPLPP---------PKGNLMYENLIVVA 497
            P P        Q + PPP  P PP PPP  P PPL P         P G +    L  + 
Sbjct: 2909 PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALV 2968

Query: 498  GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPL 531
             G     P+   P P P  +      PP + H L
Sbjct: 2969 PGRVAV-PRFRVPQPAPSREAPASSTPPLTGHSL 3001

Length = 3151

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 68.2 bits (166), Expect = 1e-11
 Identities = 36/164 (21%), Positives = 45/164 (27%), Gaps = 35/164 (21%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455
           P P+ PP   P     P                     A P    P    PP  AP    
Sbjct: 701 PTPMRPPAAPPGRAQRPAA---------------ATGRARPPAAAPGRARPPAAAPGRAR 745

Query: 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 515
           P       P        PP   P    PP             G  +   P   PP P   
Sbjct: 746 P-------PAAAPGRARPPAAAPGRARPPAA---------APGAPTPQPPPQAPPAPQQR 789

Query: 516 PQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLI 559
           P+G+P  +PPP       PT +        G + P   +   L+
Sbjct: 790 PRGAPTPQPPPQ----AGPTSMQLMPRAAPGQQGPTKQILRQLL 829

Length = 991

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 66.7 bits (163), Expect = 4e-11
 Identities = 35/167 (20%), Positives = 44/167 (26%), Gaps = 19/167 (11%)

Query: 392 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 451
           Q  P  P PP +  P  + P Q                   + +P    P    P     
Sbjct: 167 QQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQA 226

Query: 452 PPGPPLQEEGPPPQGPHPPVPPP----QGPPPPLPPPKGNLMYENLIVVAGGISETEPQV 507
           P  PPL  + P    P      P    Q PPPP  PP+                +     
Sbjct: 227 PAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQ-------------QQPPQPQ 273

Query: 508 GPPPPVPPPQGSP--PQRPPPSRHPLLPPTKITASVEGPYGHEVPYH 552
             PPP   P   P  PQ       P   P  +    +       P  
Sbjct: 274 AQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQF 320

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 66.1 bits (161), Expect = 8e-11
 Identities = 45/171 (26%), Positives = 49/171 (28%), Gaps = 38/171 (22%)

Query: 384  LSKSESDSQVGPPPPVPP------PEGHPPPVHP---PQGPVRNLMYENLILVAGGISEA 434
            L +  SD    PPPP+PP      P+   PP  P   P  P            A      
Sbjct: 2540 LEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEP------------AVTSRAR 2587

Query: 435  NPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLI 494
             P   PP    P       G P    GP P  P PP      PPPP P P  N    +  
Sbjct: 2588 RPDA-PPQSARPRAPVDDRGDP---RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP 2643

Query: 495  VVAGGISETEPQVGPP----------PPVPPPQGSPPQRPPPSRHPLLPPT 535
                          P                   SPPQRP   R     PT
Sbjct: 2644 PTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRP---RRRAARPT 2691

Length = 3151

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 540 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVK 599
            V GP G           ++L+AGGIGI+PF ++L  +              + +++  +
Sbjct: 82  EVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKP------GGEITLLYGAR 135

Query: 600 KSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEG 642
              +L      + + +     +  N    + ++RE+E  L  G
Sbjct: 136 TPADL-----LFLDELEELAKEGPNFRLVLALSRESEAKLGPG 173

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|203841 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 555 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES 614
           YEN++LVAGGIGI+PF++IL D+ ++    K+   + +   WAV+  + L    +   E 
Sbjct: 1   YENVLLVAGGIGITPFISILKDLGNKS---KALKTKKIKFYWAVRDLSSLEWFKDVLNEL 57

Query: 615 ICPFFSDKLNLETFIYVTRETE 636
                 +  N+E  IY+T E E
Sbjct: 58  EE--LKELGNIEIHIYLTGEYE 77

Length = 149

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 61.1 bits (148), Expect = 8e-10
 Identities = 35/169 (20%), Positives = 42/169 (24%), Gaps = 20/169 (11%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455
           PP   P    P      Q P  +             S+  P     +   P Q  P   P
Sbjct: 74  PPAPAPQSPQPDQQQQSQAPPSHQYP----------SQLPPQ---QVQSVPQQPTPQQEP 120

Query: 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV-- 513
                  P   P       Q  PPP  P +                  + Q  P      
Sbjct: 121 YYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLY 180

Query: 514 -----PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYEN 557
                  PQ  PP  P PS   + PP       +  YG   P   MY  
Sbjct: 181 PEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG 229

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 61.7 bits (150), Expect = 1e-09
 Identities = 35/146 (23%), Positives = 43/146 (29%), Gaps = 36/146 (24%)

Query: 391 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 450
           +   PP P   P+  PP   P    +   M                   PP P  PPQ  
Sbjct: 226 APAQPPLPPQLPQQPPPLQQPQFPGLSQQM-------------------PPPPPQPPQQQ 266

Query: 451 PPPGPPLQEEGPPPQGPHPPVP-PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 509
             P  P  +  PPPQ    P P  PQG   PLPPP+                +  P V  
Sbjct: 267 QQPPQPQAQ--PPPQNQPTPHPGLPQGQNAPLPPPQQ--------------PQLLPLVQQ 310

Query: 510 PPPVPPPQGSPPQRPPPSRHPLLPPT 535
           P           Q    S+      +
Sbjct: 311 PQGQQRGPQFREQLVQLSQQQREALS 336

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 61.1 bits (148), Expect = 2e-09
 Identities = 46/172 (26%), Positives = 58/172 (33%), Gaps = 42/172 (24%)

Query: 395  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISE-ANPHVG---PPLP------- 443
            P P  PP      P   P  PV   ++  ++    G+ E A+   G   PPLP       
Sbjct: 2504 PDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAA 2563

Query: 444  ----VPPPQGAP-PPGPPLQEE----GPPPQGPHPPVP-----PPQGPPPPLPPPKGNLM 489
                VPPP+ AP P  P +         PPQ   P  P      P+GP PP P P     
Sbjct: 2564 PDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP---- 2619

Query: 490  YENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 541
                               PPPP P P  + P   PP   P     +   + 
Sbjct: 2620 -------------DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAP 2658

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 60.9 bits (148), Expect = 2e-09
 Identities = 36/143 (25%), Positives = 40/143 (27%), Gaps = 29/143 (20%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
            P P   P   P P   PQ P                        PP P  PPQ    P 
Sbjct: 220 LPAPSQAPAQPPLPPQLPQQPPPL---------QQPQFPGLSQQMPPPPPQPPQQQQQPP 270

Query: 455 PPLQEEGPPPQGPHPPVP-PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
            P  +  PPPQ    P P  PQG   PLPPP+                +  P V  P   
Sbjct: 271 QPQAQ--PPPQNQPTPHPGLPQGQNAPLPPPQQ--------------PQLLPLVQQPQGQ 314

Query: 514 PP---PQGSPPQRPPPSRHPLLP 533
                 +    Q     R  L  
Sbjct: 315 QRGPQFREQLVQLSQQQREALSQ 337

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.8 bits (148), Expect = 2e-09
 Identities = 24/140 (17%), Positives = 25/140 (17%), Gaps = 38/140 (27%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP-- 451
             P   P P    P       P                + A      P P P P      
Sbjct: 404 AAPAAAPAPAAAAPAAAAAPAP----------------AAAPQPAPAPAPAPAPPSPAGN 447

Query: 452 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 511
            P        P       P P P   P P   P                    P   P P
Sbjct: 448 APAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP-----------------APAPPAAPAP 490

Query: 512 PVPPPQGSPPQRPPPSRHPL 531
              P     P  P       
Sbjct: 491 AAAPA---APAAPAAPAGAD 507

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 60.7 bits (147), Expect = 3e-09
 Identities = 42/151 (27%), Positives = 45/151 (29%), Gaps = 28/151 (18%)

Query: 395  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
            P PP  P  G P  +  P              VA           P  P  PP     P 
Sbjct: 2769 PAPPAAPAAGPPRRLTRPA-------------VASLSESRESLPSPWDPADPPAAVLAPA 2815

Query: 455  PPLQEEGPPPQGPHPPVPPP----QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 510
              L    PP   P  P+PPP       PPP P P    +     V  GG     P    P
Sbjct: 2816 AAL----PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871

Query: 511  PPVPPPQGSPP----QRPPPSRHPL---LPP 534
               P     PP     RP  SR      LPP
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRSTESFALPP 2902

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 60.3 bits (146), Expect = 4e-09
 Identities = 41/171 (23%), Positives = 47/171 (27%), Gaps = 21/171 (12%)

Query: 394  GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA--- 450
            GPP  +  P            P      +    V    +   P   P  P+PPP  A   
Sbjct: 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837

Query: 451  --PPPGPPLQEEGPP-----PQGPHPPVPPPQGPPP----PLPPPKGNLMYENLIVVAGG 499
              PPP  P     P      P G     PP + P      P  PP   L    +      
Sbjct: 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVS----- 2892

Query: 500  ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 550
               TE    PP   P     P   PPP   P  PP         P     P
Sbjct: 2893 -RSTESFALPPDQ-PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQP 2941

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.0 bits (146), Expect = 4e-09
 Identities = 27/144 (18%), Positives = 30/144 (20%), Gaps = 30/144 (20%)

Query: 391 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 450
           +              P     P               A   + A      P P P P  A
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAPAAAAP----------AAAAAPAPAAAPQPAPAPAPAPA 440

Query: 451 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 510
           PP        G  P  P    P  Q  P P   P                         P
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP--------------------EPTAAP 480

Query: 511 PPVPPPQGSPPQRPPPSRHPLLPP 534
            P PP   +P   P     P  P 
Sbjct: 481 APAPPAAPAPAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 58.1 bits (141), Expect = 6e-09
 Identities = 30/137 (21%), Positives = 33/137 (24%), Gaps = 36/137 (26%)

Query: 390 DSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 449
             Q    PP    +   P   PP+  V                   P    P PV  P  
Sbjct: 87  SPQHQYQPPYASAQPRQPVQQPPEAQVPPQ------------HAPRPAQPAPQPVQQPAY 134

Query: 450 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 509
            P P  PLQ    P      P P P    P                        +    P
Sbjct: 135 QPQPEQPLQ---QPVSPQVAPAPQPVHSAPQPA---------------------QQAFQP 170

Query: 510 PPPVPPPQGSPPQRPPP 526
             PV  PQ  P   P P
Sbjct: 171 AEPVAAPQPEPVAEPAP 187

Length = 333

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 58.8 bits (142), Expect = 1e-08
 Identities = 33/166 (19%), Positives = 40/166 (24%), Gaps = 30/166 (18%)

Query: 391  SQVGPPPPVPPPEG-HPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 449
                      PP+        P  G + +L                    PP P P P+ 
Sbjct: 2669 RLGRAAQASSPPQRPRRRAARPTVGSLTSL------------------ADPPPPPPTPEP 2710

Query: 450  APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQV-- 507
            AP          P P       P     P P   P G           G      P    
Sbjct: 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP------ATPGGPARPARPPTTA 2764

Query: 508  GPPPPVPP---PQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 550
            GPP P PP     G P +   P+   L    +   S   P      
Sbjct: 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA 2810

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 58.4 bits (141), Expect = 1e-08
 Identities = 33/158 (20%), Positives = 41/158 (25%), Gaps = 18/158 (11%)

Query: 395  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
              P  PPP   P    P   P   +               +            Q + PP 
Sbjct: 2622 HAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQ 2681

Query: 455  PPLQEEGPPPQGPHPPV--PPPQGPPP-PLPPPKGNLMYENLIVVAGGISETEPQVGP-P 510
             P +    P  G    +  PPP  P P P P    +         A   +       P P
Sbjct: 2682 RPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

Query: 511  PPVP--------------PPQGSPPQRPPPSRHPLLPP 534
            P VP              PP  + P  P P   P   P
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP 2779

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 30/157 (19%), Positives = 37/157 (23%), Gaps = 7/157 (4%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
               P        P V  P+   +++   +      G         P  P P P  A P 
Sbjct: 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
            P       P   P    P  Q   P   PP+           A   S       P PP 
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQA-------AQGASAPSPAADDPVPLPPE 744

Query: 514 PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 550
           P     P   P     P  P      +   P      
Sbjct: 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 30/127 (23%), Positives = 41/127 (32%), Gaps = 3/127 (2%)

Query: 362 KYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHP---PPVHPPQGPVRN 418
           K+ ++ + K L E  +      L + + D+ V          G         P   P  +
Sbjct: 132 KWKAARIHKALKEGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSS 191

Query: 419 LMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP 478
               +        S  +    PP P       PPP P       PP GP  P PPP    
Sbjct: 192 PGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV 251

Query: 479 PPLPPPK 485
           PPL   K
Sbjct: 252 PPLSTAK 258

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.6 bits (137), Expect = 4e-08
 Identities = 19/131 (14%), Positives = 23/131 (17%), Gaps = 20/131 (15%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455
            P    P   P        P                + A          PP    P P  
Sbjct: 383 RPEAAAPAAAPVAQ-AAAAPAP--------------AAAPAAAASAPAAPPAAAPPAPVA 427

Query: 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 515
                 P       P      P PP          E + +      E       P P   
Sbjct: 428 APAAAAPAAAPAAAPAAVALAPAPPAQAAP-----ETVAIPVRVAPEPAVASAAPAPAAA 482

Query: 516 PQGSPPQRPPP 526
           P  +       
Sbjct: 483 PAAARLTPTEE 493

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.5 bits (137), Expect = 5e-08
 Identities = 19/103 (18%), Positives = 20/103 (19%), Gaps = 1/103 (0%)

Query: 427 VAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ-EEGPPPQGPHPPVPPPQGPPPPLPPPK 485
           VAGG               P     P          P P     P P P   P P  P  
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 486 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR 528
                             +P   P     P     P  P    
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA 489

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 56.7 bits (137), Expect = 5e-08
 Identities = 31/147 (21%), Positives = 36/147 (24%), Gaps = 10/147 (6%)

Query: 393 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPP 452
              PP  PPP          +         + +  A    E +P    P    PP   PP
Sbjct: 64  RFEPPTGPPPGP-GTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPP 122

Query: 453 PGPPLQEEGP------PPQGPHPPVPPPQGPPPPLPPPK---GNLMYENLIVVAGGISET 503
           P  P     P       P G   P P    P     P              +      ET
Sbjct: 123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182

Query: 504 EPQVGPPPPVPPPQGSPPQRPPPSRHP 530
                 PP  PPP   P    P     
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRR 209

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.3 bits (133), Expect = 1e-07
 Identities = 27/151 (17%), Positives = 31/151 (20%), Gaps = 1/151 (0%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGP-PLPVPPPQGAPPP 453
           P  P   P            P R       +  A   S   P   P P P P    A   
Sbjct: 403 PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAA 462

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
            P      P                 P P       +E L       +  +P   P   V
Sbjct: 463 RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522

Query: 514 PPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544
                 P    P      L P    A     
Sbjct: 523 AESIPDPATADPDDAFETLAPAPAAAPAPRA 553

Length = 700

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 30/102 (29%), Positives = 33/102 (32%), Gaps = 18/102 (17%)

Query: 428 AGGISEANPHVGPPLPVPPPQGAPP-PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 486
           A  ++ A P      P PPP         P     PPP  P  P  P    P   PPP  
Sbjct: 26  ASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPP 85

Query: 487 NLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR 528
                            +P   PPPPV P    PP  P P R
Sbjct: 86  ----------------ADPNAPPPPPVDPN-APPPPAPEPGR 110

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 20/145 (13%), Positives = 27/145 (18%), Gaps = 36/145 (24%)

Query: 385 SKSESDSQVGPPPPVPPPEGHPPPV-HPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 443
            K+ +  +   P   P  +    P                                    
Sbjct: 378 KKTPARPEAAAPAAAPVAQAAAAPAPAAAP----------------------AAAASAPA 415

Query: 444 VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 503
            PP    P P        P       P      P PP                       
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP-------------ETVAI 462

Query: 504 EPQVGPPPPVPPPQGSPPQRPPPSR 528
             +V P P V     +P   P  +R
Sbjct: 463 PVRVAPEPAVASAAPAPAAAPAAAR 487

Length = 618

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 37/203 (18%), Positives = 50/203 (24%), Gaps = 40/203 (19%)

Query: 384 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVR-------------------------- 417
           LS  E  ++    PP  PP   PP    P+ P R                          
Sbjct: 176 LSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAS 235

Query: 418 ---NLMYENLILVAGGISEA-NPHVGP-PLPVPPPQGAPP----PGPPLQEEGPPPQGPH 468
              +   E+     G  +E   P   P  LP    + +        P        P+   
Sbjct: 236 SSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERS 295

Query: 469 PPVPPPQGPPPPLPPPKGNLMYENLI--VVAGGISETEPQVGPPPPVPPPQGSP---PQR 523
           P   P      P P         +      +   S +          P P  S    P R
Sbjct: 296 PSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355

Query: 524 PPPSRHPLLPPTKITASVEGPYG 546
           PPP   P  P  +   S      
Sbjct: 356 PPPPADPSSPRKRPRPSRAPSSP 378

Length = 1352

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 38/140 (27%), Positives = 43/140 (30%), Gaps = 45/140 (32%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455
           PPP PP      P      P                        PP P  PP  AP P  
Sbjct: 43  PPPPPPSTAAAAPAPAAPPP------------------------PPPPAAPP--APQPDD 76

Query: 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLI-----VVAGGISETE------ 504
           P     PPP  P+ P PPP  P  P PP       +N +     VV  G  E++      
Sbjct: 77  PNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPGRIDNAVGGFSYVVPAGWVESDATHLDY 136

Query: 505 --------PQVGPPPPVPPP 516
                       P P  PPP
Sbjct: 137 GSALLSKTTGEPPMPGQPPP 156

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 54.3 bits (130), Expect = 3e-07
 Identities = 35/162 (21%), Positives = 46/162 (28%), Gaps = 17/162 (10%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
             P P  PP+    P  P    + ++ Y+         S    +   P+   P    PPP
Sbjct: 647 VFPTPHQPPQVEITPYKPTWTQIGHIPYQP--------SPTGANTMLPIQWAPGTMQPPP 698

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
             P      PP  P      P        PP            A       P    P   
Sbjct: 699 RAP--TPMRPPAAPPGRAQRPAAATGRARPPAAA--PGRARPPAAAPGRARPPAAAPGRA 754

Query: 514 PPPQGSPPQRPPPSRH-----PLLPPTKITASVEGPYGHEVP 550
            PP  +P +  PP+       P  PP    A  + P G   P
Sbjct: 755 RPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTP 796

Length = 991

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.1 bits (128), Expect = 5e-07
 Identities = 30/150 (20%), Positives = 37/150 (24%), Gaps = 17/150 (11%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
                P   G   P  PP  P            A     A     P  P P P   PP G
Sbjct: 665 GGDGWPAKAGGAAPAAPPPAP------------APAAPAAPAGAAPAQPAPAPAATPPAG 712

Query: 455 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 514
                   PPQ       P      P+P P      E         +  +P   P P   
Sbjct: 713 QADDPAAQPPQAAQGASAPSPAADDPVPLP-----PEPDDPPDPAGAPAQPPPPPAPAPA 767

Query: 515 PPQGSPPQRPPPSRHPLLPPTKITASVEGP 544
               + P   PPS    +      +  +  
Sbjct: 768 AAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.6 bits (126), Expect = 7e-07
 Identities = 33/166 (19%), Positives = 39/166 (23%), Gaps = 19/166 (11%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVA----------GGISEANPHVGP-PLP 443
            PP  P                          +A          GG     P     P  
Sbjct: 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAA 460

Query: 444 -VPPPQGAPPPGPPLQEEGPPPQGPHP-PVPPPQGPPP--PLPP-PKGNLMYENLIVVAG 498
              P    P P        P    P   P P    PPP   LPP        +     AG
Sbjct: 461 AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAG 520

Query: 499 GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544
            ++E+ P    P    P        P P+  P       T  V  P
Sbjct: 521 WVAESIPD---PATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563

Length = 700

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 51.2 bits (123), Expect = 9e-07
 Identities = 23/98 (23%), Positives = 25/98 (25%), Gaps = 13/98 (13%)

Query: 387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP 446
           S+  S     P  P P   P        P                S       PP P  P
Sbjct: 185 SDPPSSSPGVPSFPSPPEDPSSPSDSSLP-------------PAPSSFQSDTPPPSPESP 231

Query: 447 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 484
              +PPPGP      P  Q P      P  P     P 
Sbjct: 232 TNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 52.5 bits (126), Expect = 9e-07
 Identities = 29/141 (20%), Positives = 37/141 (26%), Gaps = 25/141 (17%)

Query: 389 SDSQVGPPPPVPPPEGHPP---PVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP 445
           S         +P P+ +           GPV   M       A     +    G P+  P
Sbjct: 633 SGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGM------PAHTARPSRVARGDPVR-P 685

Query: 446 PPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEP 505
               A    P     G PP G     PPP  P    P P G+               +  
Sbjct: 686 TAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGS---------------SLI 730

Query: 506 QVGPPPPVPPPQGSPPQRPPP 526
                PP P P G+       
Sbjct: 731 ASPTAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 26/153 (16%), Positives = 31/153 (20%), Gaps = 24/153 (15%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
           G  P   PP               +  +                         P  + P 
Sbjct: 145 GEDPNPGPPLDEEDEDADVATTNSDNSFPGE-----------DADPASASPSDPPSSSPG 193

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
            P       PP+ P  P      P P                             PP P 
Sbjct: 194 VPSFP---SPPEDPSSPSDSSLPPAPSSFQSDT---------PPPSPESPTNPSPPPGPA 241

Query: 514 PPPQGSPPQRPPPS-RHPLLPPTKITASVEGPY 545
            PP     Q PP S   P  P    T +  G  
Sbjct: 242 APPPPPVQQVPPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 51.7 bits (124), Expect = 1e-06
 Identities = 27/153 (17%), Positives = 32/153 (20%), Gaps = 38/153 (24%)

Query: 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 444
           S +        PPP  PP   PPP   P                  +SE    VG P P 
Sbjct: 105 SPTPPGPSSPDPPPPTPPPASPPPSPAP-----------------DLSEMLRPVGSPGPP 147

Query: 445 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP--PPLPPPKGNLMYENLIVVAGGISE 502
           P          P              +P             P                  
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPP----------------- 190

Query: 503 TEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT 535
              +  P  P       PP+R  P       P 
Sbjct: 191 --AEPPPSTPPAAASPRPPRRSSPISASASSPA 221

Length = 1352

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 51.8 bits (124), Expect = 1e-06
 Identities = 25/90 (27%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 392 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 451
               PPP     G PP          +     L  V+      NP +  P P  P   AP
Sbjct: 184 GAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVS-----FNPFLPGPSPAQPS--AP 236

Query: 452 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPL 481
           P   P     P  Q   PP  PP  P  P+
Sbjct: 237 PASIPAPPIPPVIQYVAPPPVPPPQPIIPI 266

Length = 582

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 23/116 (19%), Positives = 26/116 (22%), Gaps = 21/116 (18%)

Query: 429 GGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 488
           G      P    P   P P  A    P   +     Q   P  P     P   PP     
Sbjct: 374 GPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ---PSAPQSATQPAGTPPT---- 426

Query: 489 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544
                      +S          PV PP  +P    P              S  GP
Sbjct: 427 -----------VSV---DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGP 468

Length = 614

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 51.6 bits (123), Expect = 1e-06
 Identities = 51/188 (27%), Positives = 59/188 (31%), Gaps = 32/188 (17%)

Query: 380 RDYILSKSESDSQVGPPPPVPPPEGHPPP-VHPP--QGPVR-NLMYENLILVAG--GISE 433
           R+  L  + S   + PPP  P P+       HPP  QGP     M  NL        +S 
Sbjct: 333 REQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSS 392

Query: 434 ANPHVGPPLPVPP----PQGAPPPGPPLQEEG-------PPPQGPHPPVPPPQGPPPPLP 482
              H  P    PP    PQ  P    P Q          PP    HP      GPP   P
Sbjct: 393 LPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQS-P 451

Query: 483 PPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 542
             +               S   P +GPP   P    S P  PP +     PP     S  
Sbjct: 452 FAQHPF-----------TSGGLPAIGPP---PSLPTSTPAAPPRASSGSQPPGSALPSSG 497

Query: 543 GPYGHEVP 550
           G  G   P
Sbjct: 498 GCAGPGPP 505

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 19/97 (19%), Positives = 22/97 (22%)

Query: 388 ESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPP 447
            + +   P P   P      P  PP       +             A P      P PP 
Sbjct: 394 VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453

Query: 448 QGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 484
           Q AP          P P        P   P      P
Sbjct: 454 QAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 30/177 (16%), Positives = 34/177 (19%), Gaps = 30/177 (16%)

Query: 379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV 438
           LR       +S    GP      P   P P                           P  
Sbjct: 358 LRMLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAA----------------APAPAA 401

Query: 439 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQ-----GPPPPLPPPKGNLMYENL 493
            P  P   P  A                P       Q         P P P         
Sbjct: 402 PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA-------- 453

Query: 494 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 550
              A   +   P    P PV     + P R  P+  P           E P     P
Sbjct: 454 -PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP 509

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 26/147 (17%), Positives = 34/147 (23%), Gaps = 31/147 (21%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455
           P   P      P    P+                                P + AP   P
Sbjct: 454 PAAAPAA-AARPAAAGPRPV-----------------------AAAAAAAPARAAPAAAP 489

Query: 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG---NLMYENLIVVAGGISETEPQVGPPPP 512
              ++ PPP    PP      P  P   P G     + +          ET        P
Sbjct: 490 APADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP 549

Query: 513 VPPPQGSP----PQRPPPSRHPLLPPT 535
            P    +       RPP +    LP  
Sbjct: 550 APRAAAATEPVVAPRPPRASASGLPDM 576

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 24/112 (21%), Positives = 30/112 (26%), Gaps = 16/112 (14%)

Query: 433 EANPHVGPPLPVPPP--QGAPPPGPPLQEEGPPPQG-----PHPPVPPPQGPPPPLPPPK 485
           +A+   GP   + P   Q A  P P       P          P  P     P   PP  
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTV 427

Query: 486 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLL-PPTK 536
                              P    P  V P Q    ++ P S+   L P T 
Sbjct: 428 SVDP--------PAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTL 471

Length = 614

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 51.6 bits (123), Expect = 2e-06
 Identities = 34/148 (22%), Positives = 42/148 (28%), Gaps = 27/148 (18%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455
           PP V P +  PP   PP              V    S     +  P   P     P  GP
Sbjct: 552 PPKVSPSDRGPPKASPP--------------VMAPPSTGPRVMATPSTGPRDMAPPSTGP 597

Query: 456 PLQE---EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGG----------ISE 502
             Q    +GPP  GPH   PP   P    P      + E L+  + G             
Sbjct: 598 RQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKSFWEMRAGR 657

Query: 503 TEPQVGPPPPVPPPQGSPPQRPPPSRHP 530
               +   P       +    P PS  P
Sbjct: 658 DGSGIQQEPSSRRQPATQSTPPRPSWLP 685

Length = 1000

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.8 bits (122), Expect = 3e-06
 Identities = 26/157 (16%), Positives = 32/157 (20%), Gaps = 24/157 (15%)

Query: 392 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 451
            VGP P     EG P P                                  P  P   A 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPE-----------------------EAARPAAPAAPAA 623

Query: 452 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 511
           P  P        P        P    P   P         +        +       PPP
Sbjct: 624 PAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP 683

Query: 512 PVPPPQGSPPQRPPPSR-HPLLPPTKITASVEGPYGH 547
              P   + P    P++  P    T      + P   
Sbjct: 684 APAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ 720

Length = 824

>gnl|CDD|216705 pfam01794, Ferric_reduct, Ferric reductase like transmembrane component

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 18/109 (16%)

Query: 176 WMLELTGLRLDTMYGWDILRWCSLRFTGYFMIA----------WDIQGRLVQELLAWRNI 225
            +  LTGL LD +    +      R+ G                         LL  +  
Sbjct: 21  PLEWLTGLSLDRLL---LFH----RWLGRLAFLLALLHVILYLVLWLRLGGILLLLEKLK 73

Query: 226 GIANFPGVISLLAGLMMWATSFHPVR-KHFFQLFFYTHQLYVVFVVFLA 273
                 GVI+L+  L++  TS  P+R +  ++LF Y H L  V  +   
Sbjct: 74  RPYILLGVIALVLLLLLAITSLPPLRRRLGYELFLYLHILLAVAFLLAL 122

This family includes a common region in the transmembrane proteins mammalian cytochrome B-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from mouse-ear cress. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane. The Frp1 protein from S. pombe is a ferric reductase component and is required for cell surface ferric reductase activity, mutants in frp1 are deficient in ferric iron uptake. Cytochrome B-245 heavy chain is a FAD-dependent dehydrogenase it is also has electron transferase activity which reduces molecular oxygen to superoxide anion, a precursor in the production of microbicidal oxidants. Mutations in the sequence of cytochrome B-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterized by the absence of a functional plasma membrane associated NADPH oxidase. The chronic granulomatous disease gene codes for the beta chain of cytochrome B-245 and cytochrome B-245 is missing from patients with the disease. Length = 122

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.2 bits (120), Expect = 4e-06
 Identities = 28/110 (25%), Positives = 31/110 (28%), Gaps = 24/110 (21%)

Query: 443 PVPPPQGAPP--PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 500
           PVP PQ A P    P      P P     P        PP  P                 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTR--PKAAAAANIPPKEP----------------- 402

Query: 501 SETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 550
                +   PPPVPP   +PP    P   P L    I    +  Y    P
Sbjct: 403 ---VRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 49.7 bits (118), Expect = 6e-06
 Identities = 38/167 (22%), Positives = 48/167 (28%), Gaps = 42/167 (25%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
             P    PP   P    PP                G         G P P PPPQ   PP
Sbjct: 739 AAPGRARPPAAAPGRARPPAA------------APGRARPPAAAPGAPTPQPPPQA--PP 784

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPP-------PPLPPPKGNLMYENLIVVAGGISETEP- 505
            P  +     P+G   P PPPQ  P          P  +G        ++ GG+    P 
Sbjct: 785 APQQR-----PRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPS 839

Query: 506 --------QVGPPPPVPPPQGSPP----QRP---PPSRHPLLPPTKI 537
                   +     P P P         Q P   PP   P+    ++
Sbjct: 840 LKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQPIQVMRQL 886

Length = 991

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.6 bits (119), Expect = 6e-06
 Identities = 21/122 (17%), Positives = 25/122 (20%), Gaps = 4/122 (3%)

Query: 430 GISEANPHVGPPLPVPPPQGA-PPPGPPLQEEGPPPQGPH--PPVPPPQGPPPPLPPPKG 486
            +  A     P    P    A P   P      P           P P   P P P P  
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443

Query: 487 NLMYENLIVVAGGISETEPQVGP-PPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPY 545
                             P   P P P   P+ +    P P   P         +     
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Query: 546 GH 547
             
Sbjct: 504 AG 505

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.6 bits (118), Expect = 8e-06
 Identities = 28/132 (21%), Positives = 36/132 (27%), Gaps = 9/132 (6%)

Query: 403 EGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 462
             HP     P    R+  +       G   +       P+P   P  AP P P      P
Sbjct: 372 RHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAP--P 429

Query: 463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQV----GPPPPVPPPQG 518
           PP  P  P   P     P PPP+                +   +         P  PP  
Sbjct: 430 PPATP-LPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGA 488

Query: 519 SPPQRPPPSRHP 530
              +     RHP
Sbjct: 489 DLAEL--LGRHP 498

Length = 3151

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 430 GISEANPHVGPPLPVPPPQ-GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 488
           G+ +      PP P      G PPP PP + E   P  P  P  PP  P P  P      
Sbjct: 49  GLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVT 108

Query: 489 M 489
           +
Sbjct: 109 V 109

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 48.5 bits (115), Expect = 1e-05
 Identities = 41/155 (26%), Positives = 46/155 (29%), Gaps = 21/155 (13%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPL------PVPPPQG 449
             P  PP        PPQG                   A     P        P   PQ 
Sbjct: 189 LAPSAPPPTPSAQAVPPQGS------------PIAAQPAPQPQQPSPLSLISAPSLHPQR 236

Query: 450 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 509
            P P PPLQ +    Q P PP P  + P      P G  M   L    G +    P   P
Sbjct: 237 LPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGP-GPPMPHAL--QQGPVFLQHPSSNP 293

Query: 510 PPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544
           P P    Q   P  P PS+      T  + S   P
Sbjct: 294 PQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQP 328

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 33/173 (19%), Positives = 43/173 (24%), Gaps = 26/173 (15%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP-- 453
           PPP P       P    +        +        +           P P P  AP P  
Sbjct: 442 PPPPPRARPGSTP-ACARRARAQRARDAGPEYVDPLGALRRLPAGAAPPPEPAAAPSPAT 500

Query: 454 -------GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 506
                  GPP      PP+        P   PP   PP+                  EP 
Sbjct: 501 YYTRMGGGPPR----LPPRNRATETLRPDWGPPAAAPPEQM-----------EDPYLEPD 545

Query: 507 VGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS-VEGPYGHEVPYHLMYENL 558
                       +    P  +  P   P     S  E P   E+P   +Y+N 
Sbjct: 546 DDRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEIPTPRVYQNP 598

Length = 694

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 52/145 (35%), Positives = 62/145 (42%), Gaps = 15/145 (10%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG-----PPLPVPPPQG 449
           PPPP+P   G PPP  PP      +     +    GI    P  G     PP P+P   G
Sbjct: 2   PPPPLPGGVGIPPP--PPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAG 59

Query: 450 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 509
            PPP P       PP    PP+P   G PPP P P G  +      + GG +     V P
Sbjct: 60  IPPPPPLPGATAIPPP---PPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAA-----VPP 111

Query: 510 PPPVPPPQGSPPQRPPPSRHPLLPP 534
           PPP+P   G PP  PP    P +PP
Sbjct: 112 PPPLPGGPGVPPPPPPFPGAPGIPP 136

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 37/145 (25%), Positives = 46/145 (31%), Gaps = 24/145 (16%)

Query: 391 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 450
            QV   P  P P+    P +PP    +    +          +A     PP      Q  
Sbjct: 105 QQVQSVPQQPTPQ--QEPYYPPPSQPQPPPAQQP--------QAQQPQPPPQVPQQQQYQ 154

Query: 451 PPPGPPLQEEGPPPQGPHPPVP----------PPQGPPPPLPPPKGNLMYENLIVVAGGI 500
            PP  P  ++ PPPQ    P             PQ  PP  P P    M         G 
Sbjct: 155 SPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPY----SGA 210

Query: 501 SETEPQVGPPPPVPPPQGSPPQRPP 525
             ++   GPP P P   G P  RP 
Sbjct: 211 PPSQQFYGPPQPSPYMYGGPGGRPN 235

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 17/97 (17%), Positives = 21/97 (21%), Gaps = 9/97 (9%)

Query: 455 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 514
           P    E   P     P  P    P   P  +           A   +         P  P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQA--------AAAPAPAAAPAAAASAPAAP 417

Query: 515 PPQGSPPQR-PPPSRHPLLPPTKITASVEGPYGHEVP 550
           P    P     P +  P   P    A+V         
Sbjct: 418 PAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Length = 618

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 27/123 (21%), Positives = 34/123 (27%), Gaps = 18/123 (14%)

Query: 417 RNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG 476
           R ++ E  I   GG         PP  +P          P     P  + P     P   
Sbjct: 167 REMLVELQIGGRGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLP 226

Query: 477 PPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK 536
            P P  P                     P   P PP+PP        P P   P++P   
Sbjct: 227 GPSPAQPS------------------APPASIPAPPIPPVIQYVAPPPVPPPQPIIPIQH 268

Query: 537 ITA 539
           I A
Sbjct: 269 IRA 271

Length = 582

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 48.5 bits (115), Expect = 2e-05
 Identities = 45/193 (23%), Positives = 56/193 (29%), Gaps = 36/193 (18%)

Query: 385 SKSESDSQVGPPPPVPPPEGHPP---PVHPPQGPVRNLMYENLILVAGGISEANPHVGPP 441
           + + S     P     PP+G P    P   PQ P    +             + P + P 
Sbjct: 188 ALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSL------------ISAPSLHPQ 235

Query: 442 -LPVPPP---------QGAPPPGPPLQEEGPPPQGPHPPVPPP--QGPPPPLPPPKGNLM 489
            LP P P         Q   PP P  +       GP PP+P    QGP     P      
Sbjct: 236 RLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQ 295

Query: 490 YENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPL---------LPPTKITAS 540
              L            Q  P    PP Q +   + PP   PL          PP      
Sbjct: 296 PFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIP 355

Query: 541 VEGPYGHEVPYHL 553
                 H+ P HL
Sbjct: 356 QLPNQSHKHPPHL 368

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 24/123 (19%), Positives = 32/123 (26%), Gaps = 31/123 (25%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455
           P P P P         P              V    + +        P        PP  
Sbjct: 362 PVPAPQPAKPTAAAPSP--------------VRPTPAPSTR------PKAAAAANIPPKE 401

Query: 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 515
           P++E   PP  P  PV PP    P   P            +       + +    PP PP
Sbjct: 402 PVRETATPPPVPPRPVAPPVPHTPESAPK-----------LTRAAIPVDEKPKYTPPAPP 450

Query: 516 PQG 518
            + 
Sbjct: 451 KEE 453

Length = 585

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 50/139 (35%), Positives = 57/139 (41%), Gaps = 19/139 (13%)

Query: 393 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG-----PPLPVPPP 447
           + PPPP+P     PPP  PP   V  +     +  A  I    P  G     PP P+P  
Sbjct: 36  IPPPPPLPGGAAIPPP--PPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGG 93

Query: 448 QGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQV 507
            G PPP PPL      P  P PP+P   G PPP PP  G          A GI    P +
Sbjct: 94  AGIPPPPPPLPGGAAVP--PPPPLPGGPGVPPPPPPFPG----------APGIPPPPPGM 141

Query: 508 GPPPPVPPPQGSPPQRPPP 526
           G PPP P   G P     P
Sbjct: 142 GSPPPPPFGFGVPAAPVLP 160

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 32/141 (22%), Positives = 40/141 (28%), Gaps = 13/141 (9%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
           P P  PPP    P   P   P + L      L AG   + N   G P   PP   A P G
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQAL----QALPAGDQQQHNTPTGSPAANPPATFALPAG 106

Query: 455 PPLQ----EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV-----VAGGISETEP 505
           P       E G       P +        PL  P      + L        +G +   + 
Sbjct: 107 PAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQ 166

Query: 506 QVGPPPPVPPPQGSPPQRPPP 526
                      Q    + PP 
Sbjct: 167 SAQKNDESQLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 48.0 bits (114), Expect = 2e-05
 Identities = 43/185 (23%), Positives = 62/185 (33%), Gaps = 23/185 (12%)

Query: 346 WLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGH 405
           W +W P SV+     GK   S    +L    E    +++ + E +     P P+P P   
Sbjct: 243 WDEWTPCSVTC----GKGTHSRSRPIL---HEGCTTHMVEECEEEECPVEPEPLPVPA-- 293

Query: 406 PPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP-----GPPLQEE 460
           P P  P     R    E         +  N + G  +P  P    PPP     G P +E 
Sbjct: 294 PVPPTPEDDNPRPTDDEF--------AVPNFNEGLDVPDNPQDPVPPPNEGKDGNPNEEN 345

Query: 461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETE-PQVGPPPPVPPPQGS 519
             PP     P      P PP  P   N  + + +         + P+  P  P    +  
Sbjct: 346 LFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIPEDSNKEV 405

Query: 520 PPQRP 524
           P   P
Sbjct: 406 PEDVP 410

Length = 576

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 538 TASVEGPYGHEVPYHLMY--ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIV 595
             +VEGPYG    +         I +AGGIGI+PFLA+L   L    +      R V + 
Sbjct: 79  RVTVEGPYGR---FTFDDRRARQIWIAGGIGITPFLALLEA-LAARGD-----ARPVTLF 129

Query: 596 WAVKKSNELSLL 607
           + V+   +   L
Sbjct: 130 YCVRDPEDAVFL 141

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 48.2 bits (114), Expect = 2e-05
 Identities = 31/151 (20%), Positives = 40/151 (26%), Gaps = 4/151 (2%)

Query: 392 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 451
           Q G P   P PEG+P      Q     + Y   +       +         P   P  AP
Sbjct: 367 QTGEPVIAPAPEGYPQQ---SQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAP 423

Query: 452 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 511
            P  P Q+    P    P                    Y+         ++ EP    P 
Sbjct: 424 APEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQ-EPLYQQPQ 482

Query: 512 PVPPPQGSPPQRPPPSRHPLLPPTKITASVE 542
           PV       P+       P  PP      VE
Sbjct: 483 PVEQQPVVEPEPVVEETKPARPPLYYFEEVE 513

Length = 1355

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 33/147 (22%), Positives = 38/147 (25%), Gaps = 26/147 (17%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP----PPQGAP 451
            P   PP    P     Q P              G   +    GPP P P     P G P
Sbjct: 187 QPQSYPPNEPLPSSMAMQPP------------YSGAPPSQQFYGPPQPSPYMYGGPGGRP 234

Query: 452 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGG--------ISET 503
             G P  ++ PP QG         GPPP          Y                  +  
Sbjct: 235 NSGFPSGQQPPPSQGQEGY--GYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATV 292

Query: 504 EPQVGPPPPVPPPQGSPPQRPPPSRHP 530
            PQ  P    P   G        +R P
Sbjct: 293 LPQALPMSSAPMSGGGSGSPQSGNRVP 319

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.3 bits (113), Expect = 3e-05
 Identities = 27/104 (25%), Positives = 31/104 (29%), Gaps = 16/104 (15%)

Query: 424 LILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 483
           L L +   S +N    PP P   P   P P PPL +       P PP PPP         
Sbjct: 508 LNLESQSGSASNTAKTPPPPQKSPP-PPAPTPPLPQPTATAPPPTPPPPPPTATQASSNA 566

Query: 484 PKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPS 527
           P                        PPP    P  SP +   P 
Sbjct: 567 P---------------AQIPADSSPPPPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 21/108 (19%)

Query: 543 GPYGH----EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV 598
            P G     EVP     + L L+A G GI+PFL++L D+       K      +++V  V
Sbjct: 88  KPTGFLTLDEVP---PGKRLWLLATGTGIAPFLSMLRDLEIWERFDK------IVLVHGV 138

Query: 599 KKSNELSLLSNF--YKESICPFFSDKLNLETFIYVTRETEPPLEEGEL 644
           + + EL+         +                 V+RE E     G +
Sbjct: 139 RYAEELAYQDEIEALAKQYNG------KFRYVPIVSREKENGALTGRI 180

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 26/126 (20%), Positives = 33/126 (26%), Gaps = 3/126 (2%)

Query: 428 AGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK-- 485
             G +  +   G    +            +       +   P  PPP             
Sbjct: 27  TPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRS 86

Query: 486 GNLMYENLIVVAGGISETEP-QVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544
                 + +  A    E  P   GP  P PPP   PP  PPPS  P L          GP
Sbjct: 87  TPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGP 146

Query: 545 YGHEVP 550
                P
Sbjct: 147 PPAASP 152

Length = 1352

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 46.7 bits (111), Expect = 4e-05
 Identities = 26/147 (17%), Positives = 31/147 (21%), Gaps = 30/147 (20%)

Query: 390 DSQVGPPPPVPPPEGHPPPVHPPQGP-VRNLMYENLILVAGGISEANPHVGPPLPVPPPQ 448
           D   G P P PP   H      P+ P      YE       G   A+             
Sbjct: 89  DPSAGEPAPPPP---HARRTSEPELPRPGRRPYEGY-----GGPRADDRPPGLPRQDQLP 140

Query: 449 GAPPPGPPLQEEG-----PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 503
            A P  P  Q+       P     +       G PP  P                  S  
Sbjct: 141 TARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYA----------------SPA 184

Query: 504 EPQVGPPPPVPPPQGSPPQRPPPSRHP 530
                      P     P+     R  
Sbjct: 185 SYAPEQERDREPYDAGRPEYDQRRRDY 211

Length = 617

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 24/125 (19%), Positives = 28/125 (22%), Gaps = 27/125 (21%)

Query: 443 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVP----PPQGPPPPLPPPKGNLMYENLIVVAG 498
           P  P   AP   P  Q        P          P  PP   PP               
Sbjct: 381 PARPEAAAPAAAPVAQA--AAAPAPAAAPAAAASAPAAPPAAAPPAPVA---APAAAAPA 435

Query: 499 GISETEPQVGPPPPVPPPQ----------------GSPPQRPPPSRHPLLPPTKITASVE 542
                 P      P PP Q                      P P+  P     ++T + E
Sbjct: 436 AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP--AAARLTPTEE 493

Query: 543 GPYGH 547
           G   H
Sbjct: 494 GDVWH 498

Length = 618

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 46.7 bits (111), Expect = 5e-05
 Identities = 23/152 (15%), Positives = 30/152 (19%), Gaps = 22/152 (14%)

Query: 389 SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPP- 447
           +  Q   P   P             G                     P+  P    P   
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGF----------------PPRAPYASPASYAPEQE 191

Query: 448 QGAPPPGPPLQEEGPPPQGPHPPVPPPQGP-----PPPLPPPKGNLMYENLIVVAGGISE 502
           +   P      E     +    P P    P       P PPP    ++            
Sbjct: 192 RDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDA 251

Query: 503 TEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 534
               + P  P P      P   P      L P
Sbjct: 252 PVVPIRPSAPGPLAAQPAPAPGPGEPTARLNP 283

Length = 617

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
             P + P      P  PP+G            V  G   A P + P    PP     P  
Sbjct: 51  DEPDMMPAATQALPTQPPEGAAE--------AVRAG-DAAAPSLDPATVAPPNTPVEPEP 101

Query: 455 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 485
            P++   P P     P P PQ      P PK
Sbjct: 102 APVEPPKPKPVEKPKPKPKPQQKVEAPPAPK 132

Length = 226

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (111), Expect = 6e-05
 Identities = 22/101 (21%), Positives = 25/101 (24%), Gaps = 2/101 (1%)

Query: 436 PHVGPPLPVPPPQGAPPPG--PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENL 493
           P    P P  PPQ A P                P  P  PP     P   P   L     
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 494 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 534
            ++A        Q         P  +   RP  S    L  
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLAS 461

Length = 647

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 46.2 bits (109), Expect = 7e-05
 Identities = 44/170 (25%), Positives = 51/170 (30%), Gaps = 55/170 (32%)

Query: 395 PPPPV----------PPPEGHPPPVH----------PPQGPVRNLMYENLILVAGGISEA 434
           PPPP            PP  HPPP+            P  P      ++L   A     +
Sbjct: 382 PPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHS 441

Query: 435 NPHVGPP---------LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPP---------PQG 476
             H GPP              P   PPP  P      PP+      PP           G
Sbjct: 442 GLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAG 501

Query: 477 PPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPP 526
           P PPLPP +              I E        P  PPP   PP+ P P
Sbjct: 502 PGPPLPPIQ--------------IKEEPLDEAEEPESPPP---PPRSPSP 534

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 43.0 bits (100), Expect = 8e-05
 Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 16/90 (17%)

Query: 430 GISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLM 489
           G  + N       P    +  P      +E  P  +G   P P   G   P P P+    
Sbjct: 51  GADDTNGTDPDDEPEEEEEPEPEEEGE-EEPEPEEEGEEEPEPEETGEEEPEPEPE---- 105

Query: 490 YENLIVVAGGISETEPQVGPPPPVPPPQGS 519
                       E EP+  P P   P  G+
Sbjct: 106 -----------PEPEPEPEPEPEPEPEPGA 124

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.9 bits (109), Expect = 9e-05
 Identities = 20/103 (19%), Positives = 25/103 (24%)

Query: 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 444
            +               P   P     P     +   ++    AGG +        P P 
Sbjct: 818 KRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPP 877

Query: 445 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGN 487
            P        PP      PP G   P P P       P P G 
Sbjct: 878 EPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGG 920

Length = 1352

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 9e-05
 Identities = 22/77 (28%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 411 PPQGPVRNLMYENLILVAGGISEANPHVG----PPLPVPPPQGAPPPGPPLQEEGPPPQG 466
            P  PV  L+ + L  +  G             P  P  PP  A PP PP     P    
Sbjct: 362 APGAPVSELL-DRLEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAA- 419

Query: 467 PHPPVPPPQGPPPPLPP 483
              P P P  P    PP
Sbjct: 420 --RPAPAPAPPAAAAPP 434

Length = 576

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 34/165 (20%), Positives = 42/165 (25%), Gaps = 35/165 (21%)

Query: 389 SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQ 448
              Q   PP  P  + +PPP       V           +G   E +P+   P   PP +
Sbjct: 149 QQQQYQSPPQQPQYQQNPPPQAQSAPQV-----------SGLYPEESPY--QPQSYPPNE 195

Query: 449 GAPP---PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEP 505
             P      PP     P  Q   PP P P     P   P                     
Sbjct: 196 PLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGF---------------PS 240

Query: 506 QVGPPPPVPP----PQGSPPQRPPPSRHPLLPPTKITASVEGPYG 546
              PPP          G PP +          P   + S    Y 
Sbjct: 241 GQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYP 285

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 21/126 (16%), Positives = 27/126 (21%), Gaps = 15/126 (11%)

Query: 434 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG----PHPPVPPPQGPPPPLPPPKGNLM 489
                      P    A       +     P G      P  PP     PP      +  
Sbjct: 796 FRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSK 855

Query: 490 YENLI--VVAGGISETEPQVGPPPPVPPPQGSPPQR---------PPPSRHPLLPPTKIT 538
            +       A G +       P P   P   +PP+          P P   P        
Sbjct: 856 SKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGP 915

Query: 539 ASVEGP 544
               GP
Sbjct: 916 MPPGGP 921

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 21/148 (14%), Positives = 26/148 (17%), Gaps = 18/148 (12%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455
            P    P    PP  P   P        +       S A   +              P P
Sbjct: 391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

Query: 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 515
                  P     P    P+                                    P P 
Sbjct: 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAP------------------ARAAPAAAPAPA 492

Query: 516 PQGSPPQRPPPSRHPLLPPTKITASVEG 543
               PP    P       P +  A+  G
Sbjct: 493 DDDPPPWEELPPEFASPAPAQPDAAPAG 520

Length = 700

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 45.4 bits (107), Expect = 1e-04
 Identities = 27/93 (29%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 447 PQGAP----PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISE 502
           PQG P    PPG  L    PPP      VPP   P    P P+        ++ A  +  
Sbjct: 175 PQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHP 234

Query: 503 TEPQVGPPPPVPPPQGSPPQRP--PPSRHPLLP 533
                  PP  P        +P  P SRHP   
Sbjct: 235 QRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSS 267

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 23/87 (26%), Positives = 25/87 (28%), Gaps = 8/87 (9%)

Query: 443 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISE 502
             PP    P   PP+ +  PP     PPV      PPP  P                   
Sbjct: 29  FSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAA--------PPPDPEPPV 80

Query: 503 TEPQVGPPPPVPPPQGSPPQRPPPSRH 529
             P   P P  PP     P  PPP   
Sbjct: 81  PGPAGPPSPLAPPAPARKPPLPPPRPQ 107

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 19/102 (18%), Positives = 24/102 (23%), Gaps = 21/102 (20%)

Query: 438 VGPPLPVPPPQGAPPPGPP---------LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 488
            G  +P  PP+ AP PG P              P P        P Q P    P  +   
Sbjct: 168 SGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQ- 226

Query: 489 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 530
                          +  V P     P   +         H 
Sbjct: 227 -----------QQPQQQPVQPAQQPTPQNPAQQPPQTEQGHK 257

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 423 NLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGP 477
           + +   G    A    G     PPP   PP  P      PPP+   PP  PP+GP
Sbjct: 892 DQVFGPGTGRVATAPGGDAASAPPPGAGPPAPPQ---AVPPPRTTQPPAAPPRGP 943

Length = 991

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 23/136 (16%), Positives = 33/136 (24%), Gaps = 24/136 (17%)

Query: 423 NLILVAGGISEANPHVGPPLPVPPPQGAPP--PGPPLQEE--------------GPPPQG 466
             +        A                 P   G     +              G  P+ 
Sbjct: 73  AAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKP 132

Query: 467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGIS-----ETEPQVGPPPPVPPPQGSPP 521
              P   P+  P P  P +  L  E +                PQ   P  +PP Q + P
Sbjct: 133 EPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFP 192

Query: 522 QR---PPPSRHPLLPP 534
           Q+     P  +P  P 
Sbjct: 193 QQGPPEQPPGYPQPPQ 208

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 23/89 (25%), Gaps = 12/89 (13%)

Query: 387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP 446
                    P PV  P   P P  P Q PV                   P      P P 
Sbjct: 117 HAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQ------------VAPAPQPVHSAPQPA 164

Query: 447 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQ 475
            Q   P  P    +  P   P P +  P+
Sbjct: 165 QQAFQPAEPVAAPQPEPVAEPAPVMDKPK 193

Length = 333

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 29/124 (23%), Positives = 32/124 (25%), Gaps = 22/124 (17%)

Query: 434 ANPHVGPPL----PVPPPQG-APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 488
            N             P PQ    PP    Q   P  Q P   VPP   P P  P P+   
Sbjct: 71  VNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ--- 127

Query: 489 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPS--RHPLLPPTKITASVEGPYG 546
                          +P   P P  P  Q   PQ  P     H    P +       P  
Sbjct: 128 ------------PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVA 175

Query: 547 HEVP 550
              P
Sbjct: 176 APQP 179

Length = 333

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 25/122 (20%), Positives = 31/122 (25%), Gaps = 22/122 (18%)

Query: 436 PHVGPPLP------VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLM 489
           P+ GPPL             +    P    +        PP   P  P  P PP      
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPE----- 202

Query: 490 YENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEV 549
                        + P     PP P    S    P P       P    A+   P   +V
Sbjct: 203 -----------DPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV 251

Query: 550 PY 551
           P 
Sbjct: 252 PP 253

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 27/167 (16%), Positives = 33/167 (19%), Gaps = 14/167 (8%)

Query: 396 PPPVPPPEGHPPPVHPPQGP-VRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
                   G    +           +               P  GP    P  +    P 
Sbjct: 30  DAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPT 89

Query: 455 PPL-----------QEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 503
             L               PP      P PPP  PP   PP     + E L  V       
Sbjct: 90  WSLSTLAPASPAREGSPTPPGPSSPDP-PPPTPPPASPPPSPAPDLSEMLRPVGSP-GPP 147

Query: 504 EPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 550
                P     P   +            L   + TA        E P
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

Length = 1352

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 29/110 (26%), Positives = 34/110 (30%), Gaps = 10/110 (9%)

Query: 434 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHP-------PVPPPQGPPPPLPP--P 484
           A      P P P  Q  PP G P+  +  P             P   PQ  P P PP  P
Sbjct: 187 AALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQP 246

Query: 485 KGNLMYENLIVVAGGISETEPQVGPPPPVPPP-QGSPPQRPPPSRHPLLP 533
           +                      GP PP+P   Q  P     PS +P  P
Sbjct: 247 QTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQP 296

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 34/160 (21%), Positives = 48/160 (30%), Gaps = 28/160 (17%)

Query: 396 PPPVPPPEG---HPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP------ 446
           PP  PP       PPP    +G    ++Y++ I+    +           P  P      
Sbjct: 481 PPQSPPTVAIKPAPPPSRRRRGAC--VVYDDDIIEVIDVETTEEEESVTQPAKPHRKVQD 538

Query: 447 ---------PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVA 497
                     +  PP   P  + GPP   P    PP  GP     P  G           
Sbjct: 539 GFQRSGRRQKRATPPKVSP-SDRGPPKASPPVMAPPSTGPRVMATPSTGP-------RDM 590

Query: 498 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKI 537
              S    Q       PP  G   ++PP S    + P+ +
Sbjct: 591 APPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVV 630

Length = 1000

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 440 PPLPVPPPQ--GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVA 497
           P    P P      P  P      P P    PP   P  PPP + P             A
Sbjct: 86  PACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPAR--------PA 137

Query: 498 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 540
                +  Q  P PP+P P+ +P  +P    + L PP    AS
Sbjct: 138 PACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAAS 180

Length = 280

>gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription factor N terminal domain

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 17/114 (14%)

Query: 428 AGGISEANPHVGPPLPVPPPQGAPPPGP--PLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 485
           A G     P   P  PV P +      P  PL    PP   PH P+P     PPP+  P 
Sbjct: 127 ASGFKPPTPPSTPCSPVNPQETVRQLQPSGPLSNSSPPS--PHTPLPNQSPLPPPMSSPD 184

Query: 486 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQ--RPPPSRH---PLLPP 534
            +   E+       +SE      P  P PPP G   +  RPP  R    PL+P 
Sbjct: 185 SSYPSEHR--FQRQLSE------PCLPFPPPPGRGSRDGRPPYHRQMSEPLVPY 230

The N terminus of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N terminal region contains conserved MAP kinase phosphorylation sites. Length = 336

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 11/95 (11%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV-PPPQGAPPP 453
             P  PP    P PV  P               A  ++ A P    P  V  P + AP P
Sbjct: 412 SAPAAPPAAAPPAPVAAPA-AAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEP 470

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 488
                             P         P  +G++
Sbjct: 471 AVA------SAAPAPAAAPA---AARLTPTEEGDV 496

Length = 618

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 23/118 (19%)

Query: 317 GTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEW 375
            T  L L      L + A  F FL+     W + HPF++SS+P +        IK LG++
Sbjct: 8   PTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAP-DPDGRLRFTIKALGDY 66

Query: 376 TENLRDYILSKSESDSQVGPPPPVPPPEGH--PPPVHPPQGPVRNLMYENLILVAGGI 431
           T  L + +        + G    V  P G          Q           I +AGGI
Sbjct: 67  TRRLAERL--------KPGTRVTVEGPYGRFTFDDRRARQ-----------IWIAGGI 105

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 44.3 bits (104), Expect = 3e-04
 Identities = 28/111 (25%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 436 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV 495
           PH     P+  P   P      Q++   PQ P  P P  Q P  P+ P       +  + 
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA 799

Query: 496 VAGGISETEPQVGP--------PPPVPPPQGSPPQRPPPSR------HPLL 532
                 + +  V P         P  P PQ   PQ+P   +      HPLL
Sbjct: 800 PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLL 850

Length = 1355

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 27/121 (22%), Positives = 34/121 (28%), Gaps = 34/121 (28%)

Query: 433 EANPHVGPPLPVPPPQGA-------PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 485
           +  P     LP  PP+GA           P L     P     P  P     P P+ PPK
Sbjct: 54  DMMPAATQALPTQPPEGAAEAVRAGDAAAPSLD----PATVAPPNTPVEP-EPAPVEPPK 108

Query: 486 GNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPY 545
                              P+   P   P P+  P Q+      P   P  +      P 
Sbjct: 109 -------------------PK---PVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146

Query: 546 G 546
           G
Sbjct: 147 G 147

Length = 226

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 17/157 (10%), Positives = 26/157 (16%), Gaps = 13/157 (8%)

Query: 386 KSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP 445
            +       PP    P         P                    +   P    P   P
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVA----------PPQAPAVPPPPASAPQQAP 411

Query: 446 PPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEP 505
                      L       +           P         N   E L  V         
Sbjct: 412 AVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVR---PAPSA 468

Query: 506 QVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 542
               P      +          + P+  P  +  ++E
Sbjct: 469 LEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALE 505

Length = 647

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 23/89 (25%)

Query: 449 GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 508
           GAP P         P      P  PP    PP+PP                      +  
Sbjct: 380 GAPAPPSAAWGAPTPA----APAAPPPAAAPPVPPA------------------APARPA 417

Query: 509 PPPPVPPPQGSPPQRPP-PSRHPLLPPTK 536
              P P P       PP  S  P    + 
Sbjct: 418 AARPAPAPAPPAAAAPPARSADPAAAASA 446

Length = 576

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 16/108 (14%)

Query: 384 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 443
            S S   S   PP    P +  PPPV  P+ PV +                +      LP
Sbjct: 20  WSTSGFSSCFSPPESAHPDD--PPPVGDPRPPVVDTP-----------PPVSA--VWVLP 64

Query: 444 VPPPQGAPPPGPPLQEEGP-PPQGPHPPVPPPQGPPPPLPPPKGNLMY 490
            P    APPP P     GP  P  P  P  P + PP P P P+  L++
Sbjct: 65  PPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPPLPPPRPQRRLLH 112

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 18/100 (18%), Positives = 22/100 (22%), Gaps = 31/100 (31%)

Query: 397 PPVPPPEGHPPPV-------------HPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 443
           PP PP E   P +             H P+                      P V  P  
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPK------------------PTQQPTVQNPAQ 214

Query: 444 VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 483
            P  Q          ++ P      P    P   PP    
Sbjct: 215 QPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 386 KSESDSQVGPPPPVPPPEGH--PPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 443
           K     +V   P  P P+G    P V P    V  L  +    VA  I +A       + 
Sbjct: 31  KKHRQDEVAAIPLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVD 90

Query: 444 ----VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 484
                 PP  + P G P+  + P P  P    P    P  P P P
Sbjct: 91  PQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKP 135

Length = 226

>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 38/140 (27%), Positives = 41/140 (29%), Gaps = 47/140 (33%)

Query: 396 PPPVPPPEGHPPPVHPPQG--PVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA--- 450
           PP  P P   PPP  P  G  P  N  +E                   L + PP G    
Sbjct: 53  PPTTPHPSSQPPPCPPSPGHPPQTNDTHE-----------------KDLALQPPPGGKKK 95

Query: 451 ----PPPGPPLQEEGPPPQGP--------HPPVPPPQGPPPPLPPPKGNLMYENLIVVAG 498
                    P Q    P QGP        H P  PP    P  PPP G            
Sbjct: 96  EKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTP--PPPGGE----------- 142

Query: 499 GISETEPQVGPPPPVPPPQG 518
           G  E  P  GP P     +G
Sbjct: 143 GEVEGGPSPGPGPGPLDQEG 162

Length = 200

>gnl|CDD|221040 pfam11235, Med25_SD1, Mediator complex subunit 25 synapsin 1

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 36/147 (24%), Positives = 47/147 (31%), Gaps = 11/147 (7%)

Query: 395 PPPPVPPPEGHPPPVHP--PQGPVRNLMYENLILVAG------GISEANPHVGPPLPVPP 446
           PP  V PP+  P P +P  P  P +  + +N+ L A        +  A            
Sbjct: 21  PPAAVLPPQSLPAPQNPLPPVTPPQMQVPQNVSLHAAHDAAQKAVEAAKNQKQGLKNRFS 80

Query: 447 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 506
           P       P +   GPP      PV PP  P  P P P   L     +    G++    Q
Sbjct: 81  PITPLQQAPIV---GPPFSQAPAPVLPPGPPGAPKPSPASQLSLVTTVSPGSGLAPVLTQ 137

Query: 507 VGPPPPVPPPQGSPPQRPPPSRHPLLP 533
              PP  P      P        P  P
Sbjct: 138 QQVPPQQPQQPSMVPTPALGGVQPPQP 164

The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA, domain, this SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This The function of the SD domains is unclear. Length = 168

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 20/135 (14%), Positives = 28/135 (20%), Gaps = 10/135 (7%)

Query: 398 PVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPL 457
                    PP  P      +   ++       +                + A PP    
Sbjct: 417 AAAATRAEAPPAAPAPPATADRG-DDAADGDAPVPAKANARASADSRCDERDAQPPADSG 475

Query: 458 QEEGPPPQGPHP----PVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
               P    P      P P    P    P    +         A           P P  
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA---AASREDAPAAAAPPAPEA 532

Query: 514 PPPQGSPPQRPPPSR 528
            PP  +P    P +R
Sbjct: 533 RPP--TPAAAAPAAR 545

Length = 830

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 4e-04
 Identities = 40/199 (20%), Positives = 50/199 (25%), Gaps = 62/199 (31%)

Query: 395  PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
             P   P P+  PPP   PQ P                    P   PP P PP      P 
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPP-------------QPQPPPPPPPRPQPPLAPTTDPA 2950

Query: 455  PPLQEEGPPPQG-------------------PHPPVPPPQGPPPPL-------------- 481
               +  G  PQ                    P P    P    PPL              
Sbjct: 2951 GAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASS 3010

Query: 482  --------PPPKGNLM-------YENLIVVAGGISETEP-QVGPPPPVPPPQGSPPQRPP 525
                    PPP             E+    +   S++E   +    P+PP    P    P
Sbjct: 3011 LALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEP 3070

Query: 526  PSRHPLLPPTKITASVEGP 544
                P     +  +S  GP
Sbjct: 3071 DPATPEAGARESPSSQFGP 3089

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 20/105 (19%), Positives = 23/105 (21%), Gaps = 15/105 (14%)

Query: 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 444
             + +     P    P  +   P   PPQ              A   S A     P  P 
Sbjct: 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG----------ASAPSPAADDPVPLPPE 744

Query: 445 PPPQGAP-----PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 484
           P     P      P PP            PP  PP          
Sbjct: 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD 789

Length = 824

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 32/106 (30%), Positives = 40/106 (37%), Gaps = 13/106 (12%)

Query: 440 PPLPVPPPQGAPPPGPPLQEEGPPPQG-------PHPPVPPPQGPPPPLPPPK----GNL 488
           P  P P P  AP P  P +++ P P          +  +  P  P  P+PPP     GN 
Sbjct: 283 PVEPEPLPVPAPVPPTP-EDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNP 341

Query: 489 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 534
             ENL          E  V P PP   P GS  +      +P  PP
Sbjct: 342 NEENLFPPGDDEVPDESNVPPNPPN-VPGGSNSEFSSDVENPPNPP 386

Length = 576

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (103), Expect = 4e-04
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 448 QGAPPPGPPLQEEGPPPQGPHPPV-PPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 506
             +P   P ++++ P P  P P   P P  P  P   P      E     +    E +P 
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPA-----ELPSPASAPTPEQQPP 435

Query: 507 VGPPPPVPPPQGSPPQRPPPSRHPLLP 533
           V    P+PP   SP    P +     P
Sbjct: 436 VARSAPLPP---SPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.7 bits (104), Expect = 4e-04
 Identities = 28/149 (18%), Positives = 37/149 (24%), Gaps = 25/149 (16%)

Query: 434 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENL 493
           A+   G          A           P  + P  P P P     P  PPK        
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP------- 86

Query: 494 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-----SVEGPYG-- 546
              A   +       PP                   PL       A     S+E P    
Sbjct: 87  ---AAAAAAAAAPAAPPAA-AAAAAPAAAAVEDEVTPLRGAAAAVAKNMDASLEVPTATS 142

Query: 547 -HEVPYHLMYENLILV------AGGIGIS 568
              VP  L+ +N I++        G  +S
Sbjct: 143 VRAVPAKLLIDNRIVINNHLKRTRGGKVS 171

Length = 1228

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 27/96 (28%)

Query: 392 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV-GPPLPVPPPQGA 450
           Q    P  PPP  +      PQ                      P++ GP  P+ PP G 
Sbjct: 35  QAYYGPRPPPPYFNSSVASSPQPH--------------------PYMWGPQQPMMPPYGT 74

Query: 451 PPPGPPLQEEGPPPQGP--HPPVPPPQGPPPPLPPP 484
           PPP   +     PP G   HP +PP   P  P   P
Sbjct: 75  PPPYAAMY----PPGGVYAHPSMPPGSHPFSPYAMP 106

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 600
           V GP G+      + + ++L+AGG GI+P  AI  ++  + +         V +++  + 
Sbjct: 93  VRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGD------ANKVTLLYGART 146

Query: 601 SNELSLLSNFYKESICPFFSDKLNLETFIYVTRE 634
           + +L        + +     ++L  +    VT +
Sbjct: 147 AKDL-----LLLDEL-----EELAEKEVHPVTDD 170

Length = 252

>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1)

 Score = 43.5 bits (102), Expect = 5e-04
 Identities = 38/208 (18%), Positives = 57/208 (27%), Gaps = 26/208 (12%)

Query: 355 SSSPLEGKYHSSVLIKVLGEWTENLRDYILS----KSESDSQVGPPPPVPPPEGHPPPVH 410
            SS L+G+  +  L + L      + D ++     +  + S+   P    P +     + 
Sbjct: 443 PSSGLDGEGLAETLKQELNTSLSQVVDTVVKRFVHQRRALSKQAKPERAAPEQLFKDLML 502

Query: 411 PPQ-----GPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG-APPPGPPLQEEGPP- 463
           P Q      P  + + +                  P    PP   A      L       
Sbjct: 503 PSQMLDRKSPRTHTVNDRGQCFGDPDISTAAMFIIP---KPPDSFANVAAAALYNSPFCM 559

Query: 464 PQGPHPPVPPPQGPPPPL---PPPK------GNLMYENLIVVAGGISETEPQVG---PPP 511
           PQ P P   P Q     L   P  K        +    +  +        P  G    P 
Sbjct: 560 PQTPQPQDAPEQTEALSLVVTPKKKRHKVTDTRITPRTVSRILALRDAVGPAAGTHHQPL 619

Query: 512 PVPPPQGSPPQRPPPSRHPLLPPTKITA 539
                  S    PPP RHP   P  +  
Sbjct: 620 HPSSLSASMGFHPPPFRHPFPLPLTVAI 647

The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 24/92 (26%), Positives = 29/92 (31%), Gaps = 20/92 (21%)

Query: 392 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 451
            V     + P + H P +  P                       P    P     P    
Sbjct: 75  PVPGQHSMTPTQHHQPNLPQPAQQ-----------------PFQPQPLQPPQPQQPMQPQ 117

Query: 452 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 483
           PP  P+     PPQ P PP+ P Q P PPL P
Sbjct: 118 PPVHPIPP--LPPQPPLPPMFPMQ-PLPPLLP 146

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 37/145 (25%), Positives = 41/145 (28%), Gaps = 43/145 (29%)

Query: 391 SQVGPPPPVPPPEGHPP--PVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQ 448
           SQ  PP     P  H P  P   P  P + LM               P  G     P   
Sbjct: 43  SQQHPPTHTLQPHHHIPVLPAQQPVVPQQPLM---------------PVPGQHSMTPTQH 87

Query: 449 GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 508
             P    P Q+   P     P    P  P PP+ P                         
Sbjct: 88  HQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIP----------------------- 124

Query: 509 PPPPVPPPQGSPPQRPPPSRHPLLP 533
           P PP PP     P +P P   PLLP
Sbjct: 125 PLPPQPPLPPMFPMQPLP---PLLP 146

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 30/129 (23%), Positives = 39/129 (30%), Gaps = 20/129 (15%)

Query: 422 ENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPL 481
             + L+A  + EA      P P PP +   PP  P     P P  P     P + P  P 
Sbjct: 39  LAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98

Query: 482 PPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQ----RPPPSRHPLLPPTKI 537
           P PK                          P P P+  P +     P     P  PP+  
Sbjct: 99  PKPK----------------PKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAA 142

Query: 538 TASVEGPYG 546
           +AS      
Sbjct: 143 SASGAATGP 151

Length = 244

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 25/107 (23%)

Query: 441 PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 500
           P  + PPQ   PP  P+ E  P P+ P P  P       P P PK               
Sbjct: 55  PADLEPPQAVQPPPEPVVEPEPEPE-PIPEPPKEAPVVIPKPEPK--------------- 98

Query: 501 SETEPQVGPPP-------PVPPPQGSPPQRPPPSRHPLLPPTKITAS 540
              +P+  P P         P  +  P +  P S      P + T+S
Sbjct: 99  --PKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSS 143

Length = 246

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.4 bits (102), Expect = 7e-04
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 441  PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 500
                P P G  PP P   +  P P    P + P +    P+ P         ++    G+
Sbjct: 2492 AGAAPDPGGGGPPDP---DAPPAPSRLAPAILPDEPVGEPVHP--------RMLTWIRGL 2540

Query: 501  SE--TEPQVGPPPPVPP--PQGSPPQRPPPSRHPLLPP 534
             E  ++    PPPP+PP  P  +P +  PP R    P 
Sbjct: 2541 EELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPS 2578

Length = 3151

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 42.9 bits (101), Expect = 7e-04
 Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 16/100 (16%)

Query: 436 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK------GNLM 489
                 LP P PQ  PPP PP   E            P  G      P +         +
Sbjct: 260 LPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADL 319

Query: 490 YENLI----------VVAGGISETEPQVGPPPPVPPPQGS 519
            +N++            AGG  ++  +  P        GS
Sbjct: 320 PDNILATLQTVQRRRGRAGGEQKSNHRGRPLRSRLGKPGS 359

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 20/100 (20%), Positives = 25/100 (25%), Gaps = 10/100 (10%)

Query: 445 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETE 504
           P PQ  PP     Q   P P         P G       P G+         A       
Sbjct: 51  PSPQAPPPVAQLPQP-LPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAG 109

Query: 505 PQVGPPP----PVPPPQG-----SPPQRPPPSRHPLLPPT 535
           P +   P    PV  P       +      P++   L   
Sbjct: 110 PTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQL 149

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 24/77 (31%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 441 PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGI 500
             PV    G  PP        P P       PPP GPPPP  P    +            
Sbjct: 37  AQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTP--PPPNSG 94

Query: 501 SETEPQVGPPPPVPPPQ 517
              +PQ  PPP   PPQ
Sbjct: 95  YMADPQEPPPPYPGPPQ 111

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 0.001
 Identities = 41/189 (21%), Positives = 51/189 (26%), Gaps = 54/189 (28%)

Query: 394 GPPPPVPPPEGHPP--PVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 451
           G   P PPPE   P     PP G            V G      P   P  P PPP    
Sbjct: 274 GATGPPPPPEAAAPNGAAAPPDG------------VWGAALAGAPLALPAPPDPPPP--A 319

Query: 452 PPGPPLQEEGP-------PPQGPH-------------PPVPPPQG---------PPPPLP 482
           P G   +E+          P                 P   PP            P    
Sbjct: 320 PAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRAS 379

Query: 483 PP---KGNLMYENLIVVAGGISETEPQVGPP----PPVPPPQGSPPQRPPPSRHPLLPPT 535
            P   + +  +       G   + + +   P     P P P   P   PPP   P   P+
Sbjct: 380 LPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP--LPS 437

Query: 536 KITASVEGP 544
               S +GP
Sbjct: 438 AEPGSDDGP 446

Length = 3151

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 39/179 (21%), Positives = 49/179 (27%), Gaps = 35/179 (19%)

Query: 386 KSESDSQVGPPPPVPPPEGHPPP----VHPPQ--GPVRNLMYENLILVAGGISEANP--H 437
            S + S    P PVP P   P P     H P+   P +  M    I +     +      
Sbjct: 586 ASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNV 645

Query: 438 VGPPLPVPPPQGAPPP------GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYE 491
           +  P P  PPQ    P              P P G +  +P    P    PPP+      
Sbjct: 646 LVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRA----- 700

Query: 492 NLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 550
                        P    PP  PP      QRP  +     PP         P      
Sbjct: 701 -------------PTPMRPPAAPP---GRAQRPAAATGRARPPAAAPGRARPPAAAPGR 743

Length = 991

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 23/111 (20%), Positives = 27/111 (24%), Gaps = 24/111 (21%)

Query: 440 PPLPVPPPQGAPPPG-PPLQEEGPPPQGPHPPVPP----PQGPPPPLPPPKGNLMYENLI 494
            P P  P   AP P  P       P       +PP     +   PP  PP          
Sbjct: 365 APQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPP---------- 414

Query: 495 VVAGGISETEPQVGPPPPVPPP---QGSPPQRPPPSRHPLLPPTKITASVE 542
                     P V   P   P       P    P    P  P  +  A + 
Sbjct: 415 ------RPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIA 459

Length = 585

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 28/161 (17%), Positives = 36/161 (22%), Gaps = 22/161 (13%)

Query: 393 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPP 452
           V   PPV   +       PP  P                    P  G P+  P P+G P 
Sbjct: 340 VTQTPPVASVDV------PPAQPTVAWQ-----------PVPGPQTGEPVIAPAPEGYPQ 382

Query: 453 ---PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 509
                 P  +   P Q P  P  P   P    P  +    Y              P    
Sbjct: 383 QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQP--YYAPAPEQPAQQPYYAPAPEQ 440

Query: 510 PPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 550
           P      Q    Q     +                  ++ P
Sbjct: 441 PVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQP 481

Length = 1355

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 31/135 (22%), Positives = 41/135 (30%), Gaps = 13/135 (9%)

Query: 431 ISEA-NPHVGPPL----PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG--PPPPLPP 483
           ISE  +  +G P+     V P  G P P PP       P+ P P   P +G   P     
Sbjct: 70  ISETLSRELGRPIRIAITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDR 129

Query: 484 PKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPP---PSRHPLLPPTKITAS 540
           P G    + L          + +  P            Q+     P R P   P      
Sbjct: 130 PPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPE 189

Query: 541 VE---GPYGHEVPYH 552
            E    PY    P +
Sbjct: 190 QERDREPYDAGRPEY 204

Length = 617

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 29/107 (27%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 440 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGG 499
              P P P   P P P    E P       P P P+  P P P PK          V   
Sbjct: 63  AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK---------PVKKV 113

Query: 500 ISETEPQVGPPPPVP--PPQGSPPQRPPPSRHPLLPPTKITASVEGP 544
             + + +V P  P P  P + + P RP  S         +T+   GP
Sbjct: 114 EEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGP 160

Length = 246

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 433 EANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP-PPLPPP 484
           EA P   PP PV   Q  PPP   +    PP   P P  P    PP P  PPP
Sbjct: 139 EALPQPPPPAPVVMMQ--PPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPP 189

Length = 274

>gnl|CDD|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 538 TASVEGPYGHEVPYHLMY-ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 596
              V GPYG+  P   M   +L+L+AGG+G++P  ++L   L+ ++        N+ +++
Sbjct: 90  IVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVL---LYAMDNRWKY--GNITLIY 144

Query: 597 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVP 656
             K   +L     FY E I    ++  N++    VTR+ E P      H      I  V 
Sbjct: 145 GAKYYEDLL----FYDELIKD-LAEAENVKIIQSVTRDPEWP----GCHGLPQGFIERVC 195

Query: 657 SGCAMSVLVGTGNNV 671
            G    +      + 
Sbjct: 196 KGVVTDLFREANTDP 210

Length = 289

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 21/84 (25%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 401 PPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 460
           P EG      P   P       N +       E         P          G PL + 
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRL-------EKEVRSLRSAPTAAA---TAAGAPLPDF 395

Query: 461 GPPPQGPHPPVPPPQGPPPPLPPP 484
            P P+GP  P P      PPL  P
Sbjct: 396 DPRPRGPPAPEPARSAEAPPLVAP 419

Length = 504

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 28/106 (26%), Positives = 30/106 (28%), Gaps = 34/106 (32%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA--- 450
           G  P     E  P     P GP                 E  P  G      PPQG+   
Sbjct: 124 GANPVTATGEPVPQMPASPPGP-----------------EGEPQPGNTPVSFPPQGSVAV 166

Query: 451 PPPGP--PLQEEGPPPQGPHPPVPPPQG------------PPPPLP 482
           PPP    P     PPPQ  +  VP P                P LP
Sbjct: 167 PPPTAFYPGNGVTPPPQVTYQSVPVPNRIQRKTFTYNEGKKGPSLP 212

Length = 475

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 22/105 (20%), Positives = 25/105 (23%), Gaps = 4/105 (3%)

Query: 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 444
                D       P  PP     P                   A G +       P    
Sbjct: 822 RSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881

Query: 445 PPPQGAPPPGPPLQ--EEGPPPQGPHPPVPPPQGPPPPL-PPPKG 486
            P   APP           P P+   P      GP PP  P P+G
Sbjct: 882 RPGAAAPPKAAAAAPPAGAPAPRPR-PAPRVKLGPMPPGGPDPRG 925

Length = 1352

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 0.002
 Identities = 24/104 (23%), Positives = 27/104 (25%), Gaps = 18/104 (17%)

Query: 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 444
           S+S S S     PP P     PP   PP                            P P 
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTA----------------TAPPPTPPPP 555

Query: 445 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 488
           PP         P Q   P    P PP+P    P P        +
Sbjct: 556 PPTATQASSNAPAQI--PADSSPPPPIPEEPTPSPTKDSSPEEI 597

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 0.002
 Identities = 17/94 (18%), Positives = 19/94 (20%), Gaps = 19/94 (20%)

Query: 392 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 451
           +          +  PPP   P  P                    P    P P        
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPP-------------------APTPPLPQPTATAPPPT 551

Query: 452 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 485
           PP PP          P         PPP    P 
Sbjct: 552 PPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT 585

Length = 620

>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 20/89 (22%), Positives = 24/89 (26%), Gaps = 23/89 (25%)

Query: 451 PPPGP-PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGP 509
           P   P   +E  P  +G   P P  +G   P P                         G 
Sbjct: 60  PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEE----------------------TGE 97

Query: 510 PPPVPPPQGSPPQRPPPSRHPLLPPTKIT 538
             P P P+  P   P P   P   P   T
Sbjct: 98  EEPEPEPEPEPEPEPEPEPEPEPEPGAAT 126

This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 438 VGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPP--PPLPPPKGNLMYENLIV 495
           V  P     P+  P P PP     PPP  P  P   P  P    P    + + + E L+ 
Sbjct: 258 VLLPRATRLPEPEPQPPPP-----PPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMF 312

Query: 496 VA 497
            A
Sbjct: 313 DA 314

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 20/108 (18%)

Query: 394 GPPPPVPPPEGHPPP--VHPPQGPVRNLMYENLILVAGGISEANPHV----GPPLPV--- 444
           G P P       P P    PP+  V N     L+L     +++  +V      P      
Sbjct: 97  GRPDPAATGGLAPGPEFAWPPRVAVVN---GTLVLREARETDSGMYVLSVSRAPNSTAAR 153

Query: 445 --------PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 484
                   P P   PP G P  ++    +   P  P P   PPP P P
Sbjct: 154 AVVFLVVGPRPVPTPPGGTPPPDDDEGDEAGAPATPAPPLHPPPAPHP 201

Length = 540

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 600
           +EGP G           LIL+AGG G +P  +IL  +L + ++      R + + W  + 
Sbjct: 84  IEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGSK------RPIHLYWGART 137

Query: 601 SNELSLLS 608
             +L L  
Sbjct: 138 EEDLYLDE 145

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 21/102 (20%), Positives = 26/102 (25%), Gaps = 23/102 (22%)

Query: 433 EANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP------QGPHPPVPPPQGPPPPLPPPKG 486
                 GPP P P P     P   L +E            P  P P     P    P   
Sbjct: 120 SLPTAGGPPTPDPAPLAQLDPLKALDQEPLSAADLDDLSAPLFP-PLDARLPAFAAPIDA 178

Query: 487 NLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR 528
               E  +            V P  P+P P+ +P        
Sbjct: 179 ----EPTM------------VPPFVPLPAPEPAPAPASQAPS 204

Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 396

>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 37/179 (20%), Positives = 48/179 (26%), Gaps = 39/179 (21%)

Query: 387 SESDSQVGPPPPVPPPEGHPPPVH----------------PPQGPV-----RNLMYENLI 425
           S SDS+   PP    PE  PP  +                 P   V          E   
Sbjct: 420 SSSDSEENEPPRTASPEPEPPSTNKWQLDNWLNKVNPHKVSPAESVSSNPPIKQPMEKEG 479

Query: 426 LVAGGISEANPHVGPPLPVP---------PPQGAPPPG-----PPLQEEGPPPQGPHPPV 471
            V    S+ +P    P P             Q  P  G      P Q E PP +      
Sbjct: 480 KVKSSGSQYHPESKEPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQRRTVGKK 539

Query: 472 PPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 530
            P +         +  L  E           +  Q  P  P    +GS   +P P + P
Sbjct: 540 QPKKPEKASAGDERTGLRPE--SEPGTLPYGSSVQTPPDRPKAATKGSR--KPSPRKEP 594

This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 28/160 (17%), Positives = 32/160 (20%), Gaps = 12/160 (7%)

Query: 372 LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGI 431
           L E  E  R    S           P      G            R          +   
Sbjct: 774 LLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS-------RSHTP 826

Query: 432 SEANPHVGPPLPVPPPQGAPPPGP---PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL 488
              +   GP  P  P   A PP        +  P   G        +  P P  P     
Sbjct: 827 DGGSESSGPARP--PGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPG 884

Query: 489 MYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR 528
                   A       P   P P      G  P   P  R
Sbjct: 885 AAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPR 924

Length = 1352

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 24/103 (23%), Positives = 27/103 (26%), Gaps = 28/103 (27%)

Query: 442 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGIS 501
           + +P    A P  PP     PP      P P    PPPP   P                 
Sbjct: 31  IALPATANADPAPPP----PPPSTAAAAPAPAAPPPPPPPAAP----------------- 69

Query: 502 ETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544
                  P P    P  +PP  P     P  PP    A     
Sbjct: 70  -------PAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPA 105

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 5/51 (9%)

Query: 440 PPLPVPPPQGAPPPGPPLQEEG--PPPQGPH---PPVPPPQGPPPPLPPPK 485
           P L     Q  PPP       G  PPP          PPP+ P  P   P+
Sbjct: 48  PGLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPE 98

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 22/93 (23%), Positives = 23/93 (24%), Gaps = 25/93 (26%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
           G P P     G P P   P  P                        PP   PP   A P 
Sbjct: 380 GAPAPPSAAWGAPTPA-APAAP------------------------PPAAAPPVPPAAPA 414

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 486
            P      P P  P    PP +   P      G
Sbjct: 415 RPAAARPAPAPAPPAAAAPPARSADPAAAASAG 447

Length = 576

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 0.003
 Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 2/82 (2%)

Query: 451 PPPGPPLQ--EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 508
           P P   L+  +EGPP  G     PP  G  P  P              AGG +     V 
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVP 437

Query: 509 PPPPVPPPQGSPPQRPPPSRHP 530
                     +P   P P+   
Sbjct: 438 DAAAAAAAPPAPAAAPQPAVRL 459

Length = 598

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 41/209 (19%), Positives = 52/209 (24%), Gaps = 39/209 (18%)

Query: 375 WTENLRDYILSKSESDSQVGP--PPPVP-PPEGHPPPVHPPQGPVRNLMYENLILVAGGI 431
           + E L    L  + SD+      P P P  P     PVH P     N        VA   
Sbjct: 46  YDEELVQRALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAA 105

Query: 432 SEANPHVGPPLPVPPPQGAPPPGP-----------------------PLQEEGPPPQGPH 468
            +    +    PV  P+ AP   P                       P QE         
Sbjct: 106 EDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQ 165

Query: 469 --------PPVP-PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP----PVPP 515
                    PVP  P   P    P     +   L   A    + + Q+           P
Sbjct: 166 LFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALP 225

Query: 516 PQGSPPQRPPPSRHPLLPPTKITASVEGP 544
               P   PP    P  P      +   P
Sbjct: 226 QILPPAALPPIVVAPAAPAALAAVAAAAP 254

Length = 559

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 40.8 bits (95), Expect = 0.003
 Identities = 12/60 (20%), Positives = 15/60 (25%), Gaps = 1/60 (1%)

Query: 428 AGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGN 487
           A            P P       P P P  +     P  P P   P +   P    P  +
Sbjct: 203 ANAAPAEPAEEEAPAPSEAGS-EPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSS 261

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 26/98 (26%), Positives = 29/98 (29%), Gaps = 32/98 (32%)

Query: 440 PPLPVPPPQGAP------------PPGP-----PLQEEGPPPQGPHPPVPPPQGPPPPLP 482
           PP   P PQ  P            P  P     P Q+  P P     P    Q P  P P
Sbjct: 20  PPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAP 79

Query: 483 ---PPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQ 517
              P  G  + E L            +V PPP   P  
Sbjct: 80  AAPPAAGAALPEAL------------EVPPPPAFTPNG 105

Length = 306

>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 32/125 (25%), Positives = 38/125 (30%), Gaps = 25/125 (20%)

Query: 393 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP------ 446
           V   PP   P   P PV  PQ PV+           G   +       P PVP       
Sbjct: 16  VANVPPAAAPTPQPNPVIQPQAPVQPGQ-------PGAPQQLAIPTQQPQPVPTSAMTPH 68

Query: 447 --PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETE 504
              Q    P P      PP  G   P      PPP   P         ++    G  E +
Sbjct: 69  VVQQAPAQPAPA----APPAAGAALPEALEVPPPPAFTPN------GEIVGTLAGNLEGD 118

Query: 505 PQVGP 509
           PQ+ P
Sbjct: 119 PQLAP 123

Length = 306

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (95), Expect = 0.004
 Identities = 26/89 (29%), Positives = 28/89 (31%), Gaps = 15/89 (16%)

Query: 431 ISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMY 490
           ISE      P  P P P  +PPP P         Q    P PPP    PP+P P      
Sbjct: 365 ISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVP------ 418

Query: 491 ENLIVVAGGISETEPQVGPPPPVPPPQGS 519
                       TEP   PP        S
Sbjct: 419 ---------AEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 26/99 (26%), Positives = 30/99 (30%), Gaps = 23/99 (23%)

Query: 440 PPLPVPPPQGAPPPGPPLQEEGPP----PQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV 495
           PP     P    P  P  Q   P     P      + P Q   P LP P           
Sbjct: 47  PPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQP----------- 95

Query: 496 VAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 534
                     Q   P P+ PPQ   P +P P  HP+ P 
Sbjct: 96  --------AQQPFQPQPLQPPQPQQPMQPQPPVHPIPPL 126

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	840
PLN02631	699	ferric-chelate reductase	100.0
PLN02292	702	ferric-chelate reductase	100.0
PLN02844	722	oxidoreductase/ferric-chelate reductase	100.0
KOG0039	646	consensus Ferric reductase, NADH/NADPH oxidase and	100.0
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.97
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	99.96
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	99.92
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	99.91
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	99.91
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	99.91
PRK08051	232	fre FMN reductase; Validated	99.91
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	99.91
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	99.91
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	99.9
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	99.9
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	99.9
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	99.9
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	99.9
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	99.9
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	99.9
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	99.9
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	99.9
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	99.89
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	99.89
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.89
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	99.88
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	99.88
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	99.88
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.88
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	99.88
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	99.88
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.87
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.87
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	99.87
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	99.87
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	99.87
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	99.87
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	99.85
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	99.85
PRK10926	248	ferredoxin-NADP reductase; Provisional	99.84
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	99.83
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	99.83
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.83
PTZ00274	325	cytochrome b5 reductase; Provisional	99.82
PRK05713	312	hypothetical protein; Provisional	99.82
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	99.82
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	99.81
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	99.81
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.81
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	99.81
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	99.81
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	99.8
PRK05802	320	hypothetical protein; Provisional	99.8
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	99.8
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	99.78
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	99.77
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	99.77
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	99.77
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	99.77
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	99.76
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	99.75
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	99.74
PLN02252	888	nitrate reductase [NADPH]	99.73
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	99.73
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	99.72
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.68
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.65
cd06193	235	siderophore_interacting Siderophore interacting pr	99.62
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.61
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.57
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	99.35
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	99.33
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	99.29
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.26
cd06203	398	methionine_synthase_red Human methionine synthase	99.24
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.23
PRK06214	530	sulfite reductase; Provisional	99.11
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.09
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	99.09
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	99.01
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	98.83
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	98.73
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.68
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.6
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.34
PF01794	125	Ferric_reduct: Ferric reductase like transmembrane	98.28
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	98.01
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	97.9
KOG3378	385	consensus Globins and related hemoproteins [Energy	97.36
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	94.69
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	93.13
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	93.11
PHA03247	3151	large tegument protein UL36; Provisional	88.12
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	88.12
COG2717	209	Predicted membrane protein [Function unknown]	87.79
PF05518	759	Totivirus_coat: Totivirus coat protein; InterPro:	87.78
PRK15313	955	autotransport protein MisL; Provisional	86.67
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	86.49
PRK05419	205	putative sulfite oxidase subunit YedZ; Reviewed	83.63
KOG3895	488	consensus Synaptic vesicle protein Synapsin [Signa	80.73

>PLN02631 ferric-chelate reductase

Probab=100.00  E-value=2.4e-126  Score=1115.68  Aligned_cols=646  Identities=30%  Similarity=0.538  Sum_probs=551.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccc-cchhhhHhhhhcccceEecccchhhHHHHHHHHHHHHHHHHHHHhccCccc-
Q 003191           29 ALKWVLKILMWVIFVAWVALIFLYPSE-FGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEENF-  106 (840)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  106 (840)
                      .+||++|++||++|++|+++|||+||+ |+++|++++.+++++|+||.+|++||+|++||++||++||+|||+.++.+. 
T Consensus         3 ~~~~~~~~~~~~~f~~~~~~~~~~pt~~~~~~~~~~~~~~~~~t~fg~~g~~~l~~~~p~~~~a~~~~~yl~~~~~~~~~   82 (699)
T PLN02631          3 NMRSLVKMLMVVLFLGWIFVWIMISTNLFKSKWTPKLAKNLNTTYFGPQGTNLVLLTVPMMFIAVLSCVYLHTQKKPTQP   82 (699)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhheeCcHHHHhhhhHHHHhhhcCceeccccchhhhhhhHHHHHHHHHHHheeeccccCcc
Confidence            579999999999999999999999999 999999999899999999999999999999999999999999999988653 


Q ss_pred             ccccCCCCCcccccccceEeeCccccchHHHHHHHHHHHHHHHhhheeeccccccccccCCCCCchhHHHHHHHhhchhc
Q 003191          107 ERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLRLD  186 (840)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~lv~gp~gipsr~E~l~I~~fi~l~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~va~RtG  186 (840)
                      .+|++.++    .|++|++|+||+||+|.+|.+++++|+++++|+++.|++.+|+.-.+++.. .+.|+++++++|+|+|
T Consensus        83 ~~~~~~~~----~~~~p~lv~~~~givs~~e~~~~~~f~~~~~w~~~~y~~~~~~~~~~~~~~-~~~~~~~l~~ig~RtG  157 (699)
T PLN02631         83 QREWKLKR----RMGRVIMVMNPLGIVTATELTFSLLFVALLAWSLYNYLYLSYHVHLHNDDN-AKIWQAKFRAFGLRIG  157 (699)
T ss_pred             hhhccccc----cccCcEEeeCCceeeeHHHHHHHHHHHHHHHHHHHHHHHhhheeccCCccc-hhHHHHHHHHHHHHHH
Confidence            33333332    399999999999999999999999999999999999999999723334333 6799999999999999


Q ss_pred             cc-------------hhhHHHHHhccchh---------------------hhhHHHHhhhchHHHHHHhhhhcccccchH
Q 003191          187 TM-------------YGWDILRWCSLRFT---------------------GYFMIAWDIQGRLVQELLAWRNIGIANFPG  232 (840)
Q Consensus       187 ii-------------Rnn~L~~LtG~s~T---------------------g~y~i~w~~~~~~~~~~~~W~~~~~~~~~G  232 (840)
                      ++             |||+++|+|||+|.                     ++|+++|...+.+ .+...|...++.+++|
T Consensus       158 ila~~~lpll~L~a~Rnn~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~-~~~~~w~~~~~~~~~G  236 (699)
T PLN02631        158 YVGHICWAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKL-METFAWNPTYVPNLAG  236 (699)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-hhhhhcccccchHHHH
Confidence            98             99999999999991                     1455566666655 3345666666667999


Q ss_pred             HHHHHHHHHHHHhchhhhhhccchhHHHhhhhHHHHHHHhhhccccceeeehhhhHHHHHHHHHhhhhccccceEEEEEE
Q 003191          233 VISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSAS  312 (840)
Q Consensus       233 vvAlv~l~lL~vtSl~~iRr~~YElF~~~H~L~ivflv~l~~H~~~~~~~~v~~~ialw~lDRllR~~r~~~~~~vasv~  312 (840)
                      ++|++++++|+++|++++||++||+|+++|+++++|++++++|++..+.+|+++++++|++||++|.+|.....++++++
T Consensus       237 viA~v~~~lm~~~Sl~~~RRr~YE~F~~~Hillaifiv~~~~H~g~~w~~~~~~~ialw~~DR~lR~~r~~~~~~lv~~~  316 (699)
T PLN02631        237 TIAMVIGIAMWVTSLPSFRRKKFELFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSAR  316 (699)
T ss_pred             HHHHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHHHHheEEecCCchHHHHHHHHHHHHHHHHHHHHHHhceEEEEEEE
Confidence            99999999999999999999999999999999988889999999876666788999999999999999987778889999


Q ss_pred             EecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhcCCCCCC
Q 003191          313 CLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQ  392 (840)
Q Consensus       313 ~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~~~~~~  392 (840)
                      .+++|++++++++++.++++||||+||++|..+++|||||||+|+|++++++++|+||++|+||++|++.+....     
T Consensus       317 ~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~~g-----  391 (699)
T PLN02631        317 ILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSSI-----  391 (699)
T ss_pred             EeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhcCC-----
Confidence            999999999999888899999999999999989999999999999865568999999999999999998763210     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          393 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVP  472 (840)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (840)
                                                                                                      
T Consensus       392 --------------------------------------------------------------------------------  391 (699)
T PLN02631        392 --------------------------------------------------------------------------------  391 (699)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCCCcCc
Q 003191          473 PPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH  552 (840)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~  552 (840)
                                                                                    +.++|.+|||||....+.
T Consensus       392 --------------------------------------------------------------~~i~V~VeGPYG~~~~~~  409 (699)
T PLN02631        392 --------------------------------------------------------------DSLEVSTEGPYGPNSFDV  409 (699)
T ss_pred             --------------------------------------------------------------CeeEEEEECCCCCCCCCc
Confidence                                                                          234799999999865556


Q ss_pred             cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191          553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  632 (840)
Q Consensus       553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT  632 (840)
                      .++|+++|||||+||||++|++++++++..+ .++..++|+|+|++|+.+|+.+.+++.+...|+..+++.++++++|||
T Consensus       410 ~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~-~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVT  488 (699)
T PLN02631        410 SRHNSLILVSGGSGITPFISVIRELIFQSQN-PSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYIT  488 (699)
T ss_pred             CCCCcEEEEEeCcChHhHHHHHHHHHhcccc-cccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhcCceEEEEEEc
Confidence            7899999999999999999999999976432 222345899999999999998766665444566555667999999999


Q ss_pred             CCCCCCCccccccc-ccccccCCCCCCCceeEEecCCchhHHHHHHHHHHHHHHHHHHhhheeeeCCCC-----CcchhH
Q 003191          633 RETEPPLEEGELHK-TMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWY  706 (840)
Q Consensus       633 r~~~~~~~~~~i~~-~~~~~f~P~~sd~~i~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  706 (840)
                      |++++. +++...+ .+..||+|+++|+|++.++|||+|+|+|++++||++||++++|++++|||||+|     +++||+
T Consensus       489 R~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lw~~~~~~~s~~~f~~~~~~~~~y~i~~~~~~~~~~~~~~~  567 (699)
T PLN02631        489 REDKKP-ETTDDHRLLQTKWFKPQPLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFSY  567 (699)
T ss_pred             CCCCCc-ccccccccccccccccCCCCCCceeeecCCccHHHHHHHHHHHHHHHHHHHhhheeEecccCCCCCcccchHH
Confidence            998764 2222222 245889999999999999999999999999999999999999999999999999     678999


Q ss_pred             HHHHHHHHhhceeeeccceeeeeehhhhhhcccccc-CCCCccccccc-------cccccccccccccccCccccccccC
Q 003191          707 KGLLFLACMVGGVLIFGGTVIGFWHLWERKSSAREN-YKDDSIEVDNA-------QNVGTMAHNDIRKKDTKSSTNILYG  778 (840)
Q Consensus       707 ~~~~~~~~~~~~~~~~~g~v~~~W~~~~~k~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~vhyg  778 (840)
                      |++|+++..|++|++ ||.|+.+||.+++++.++|+ ++++++|+++|       .+++++|+|+.+++++++.+++|||
T Consensus       568 ~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  646 (699)
T PLN02631        568 RGLWDMFLGSVCIFI-SSSIVFLWRKKQNKEGDKESKKQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHFG  646 (699)
T ss_pred             HHHHHHHHHHhheec-cceeeeeechhhccccccchhhccccccCCCCCCCCcccccccchhhhcccccccccceeeeec
Confidence            999999666655444 55555567776665555444 88899986555       2334778888999999999999999


Q ss_pred             CCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 003191          779 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD  839 (840)
Q Consensus       779 gRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~~c~s~~~~~~~~~~~f~fhs~sF~  839 (840)
                      +|||+++|+.+.   .++++|||+||||++|+++||++|++    +.++|  |||||+|||
T Consensus       647 ~rp~~~~i~~~~---~~~~~vgvlv~gp~~~~~~va~~c~s----~~~~~--~~f~s~sf~  698 (699)
T PLN02631        647 SKPNLKKILLEA---EGSEDVGVMVCGPRKMRHEVAKICSS----GLAKN--LHFEAISFN  698 (699)
T ss_pred             CCCCHHHHHHhc---cCCCceeEEEECcHHHHHHHHHHHhc----CCCcc--eeEEeeccc
Confidence            999999999944   34579999999999999999999999    44566  999999998

>PLN02292 ferric-chelate reductase

Probab=100.00  E-value=1.3e-125  Score=1111.37  Aligned_cols=647  Identities=30%  Similarity=0.540  Sum_probs=554.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cchhhhHhhhhcc-cceEecccchhhHHHHHHHHHHHHHHHHHHHhcc
Q 003191           25 LYVSALKWVLKILMWVIFVAWVALIFLYPSE-FGSELTQKFTRAT-SGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISG  102 (840)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  102 (840)
                      -.++++||++|++||++|++|+++|||+||+ |+++|++++.+++ ++|+||.+|++||+|++||++||++||+|||+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~~~~t~fg~~g~~~~~~~~p~~~~a~~~~~~l~~~~   85 (702)
T PLN02292          6 ENKDVIKGVIKFLMMVILMGTIVIWIMMPTSTYKTIWLPSMRAKLGKSTYFGAPGVNLLVYMFPMILLACLGCIYLHLKK   85 (702)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHheeeccHHHHhhccHHHHHhccCCceecccchhhHHHhhHHHHHHHHHHHHheecc
Confidence            3578899999999999999999999999999 9999999999999 6999999999999999999999999999999998


Q ss_pred             Cccc---ccccCCCCCcccccccceEeeCccccchHHHHHHHHHHHHHHHhhheeeccccccccccCCCCC--chhHHHH
Q 003191          103 EENF---ERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPT--KEQSIWM  177 (840)
Q Consensus       103 ~~~~---~~~~~~~~~~~~~~~~~~lv~gp~gipsr~E~l~I~~fi~l~i~~~~~y~~~~~~~~~~~~~~~--~~~~~~~  177 (840)
                      ++.+   .++|+.++.++++||+|++|+||+|++||+|.+++++|+++++|+++.|.++++..++++....  .++++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~p~lv~~~~G~vt~~e~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (702)
T PLN02292         86 QTTVNQFNREVRKKGGKFGALRRPMLVKGPLGIVTVTEVMFLAMFMALLLWSLANYMYNTFVTITPQSAATDGESLWQAR  165 (702)
T ss_pred             cccccchhhcccccccceeeecCcEEeeCCcceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccccchHHHHHH
Confidence            7632   2333346678999999999999999999999999999999999999999999998876654432  4578999


Q ss_pred             HHHhhchhccc-------------hhhHHHHHhccchh---------------------hhhHHHHhhhchHHHHHHhhh
Q 003191          178 LELTGLRLDTM-------------YGWDILRWCSLRFT---------------------GYFMIAWDIQGRLVQELLAWR  223 (840)
Q Consensus       178 l~~va~RtGii-------------Rnn~L~~LtG~s~T---------------------g~y~i~w~~~~~~~~~~~~W~  223 (840)
                      ++++|||+|++             |||+|+|+|||+|.                     .+|+++|...+.+ .++..|.
T Consensus       166 l~~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~-~~~~~w~  244 (702)
T PLN02292        166 LDSIAVRLGLVGNICLAFLFYPVARGSSLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQV-SQMLEWD  244 (702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhcc
Confidence            99999999996             99999999999991                     1555666666655 4556676


Q ss_pred             hcccccchHHHHHHHHHHHHHhchhhhhhccchhHHHhhhhHHHHHHHhhhccccceeeehhhhHHHHHHHHHhhhhccc
Q 003191          224 NIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSR  303 (840)
Q Consensus       224 ~~~~~~~~GvvAlv~l~lL~vtSl~~iRr~~YElF~~~H~L~ivflv~l~~H~~~~~~~~v~~~ialw~lDRllR~~r~~  303 (840)
                      +.+..+++|++|++++++|+++|++++||++||+|+++|++++++++++++|++..+.+++++++++|++||++|.+|.+
T Consensus       245 ~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~~YE~F~~~HiL~~v~~v~~~~H~~~~~~~~~~~~i~l~~~DR~lR~~r~~  324 (702)
T PLN02292        245 RTGVSNLAGEIALVAGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRFLQSR  324 (702)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhHHHHhcccHhHHHHHHHHHHHHeeeehhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56666799999999999999999999999999999999999998889999999765555688999999999999999998


Q ss_pred             cceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYI  383 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l  383 (840)
                      .++++++++.+++|++++++++++.++++||||+|+++|..+.+|+|||||+|+|++++++++++||++|+||++|++.+
T Consensus       325 ~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l  404 (702)
T PLN02292        325 NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHML  404 (702)
T ss_pred             cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhC
Confidence            88999999999999999999998888999999999999988899999999999985456889999999999999999876


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          384 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP  463 (840)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (840)
                      ...++                                                                           
T Consensus       405 ~~gd~---------------------------------------------------------------------------  409 (702)
T PLN02292        405 SSSDQ---------------------------------------------------------------------------  409 (702)
T ss_pred             CCCCc---------------------------------------------------------------------------
Confidence            32110                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecc
Q 003191          464 PQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG  543 (840)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeG  543 (840)
                                                                                       .     ..++|.|||
T Consensus       410 -----------------------------------------------------------------i-----~~~~V~VeG  419 (702)
T PLN02292        410 -----------------------------------------------------------------I-----DRLAVSVEG  419 (702)
T ss_pred             -----------------------------------------------------------------c-----ccceEEEEC
Confidence                                                                             0     234799999


Q ss_pred             CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc-CCCCCCC
Q 003191          544 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI-CPFFSDK  622 (840)
Q Consensus       544 PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~-~~~~~~~  622 (840)
                      |||....+..++++++|||||+||||+++++++++++.++ ..+..++|+|+|++|+.+|+.+++++.+|+. +....++
T Consensus       420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~-~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~  498 (702)
T PLN02292        420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSST-ETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSF  498 (702)
T ss_pred             CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhcccc-ccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhc
Confidence            9998765567789999999999999999999999876422 2234578999999999999999888887763 1112245


Q ss_pred             CceEEEEEEeCCCCCCCcccccccccc--cccCCCCCCCceeEEecCCchhHHHHHHHHHHHHHHHHHHhhheeeeCCCC
Q 003191          623 LNLETFIYVTRETEPPLEEGELHKTMS--SSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN  700 (840)
Q Consensus       623 ~~l~I~iyVTr~~~~~~~~~~i~~~~~--~~f~P~~sd~~i~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (840)
                      .++++++|+|++++++.+.+..+++++  .+++|+++|++++.+|||++|+|+|++++||++||++++|++++|||||+|
T Consensus       499 ~~~~i~iyvTr~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w~~~~~~~s~~~f~~~~~~~~~y~~~~~~  578 (702)
T PLN02292        499 IDIQIKAFVTREKEAGVKESTGNMNIIKTLWFKPNLSDQPISPILGPNSWLWLAAILSSSFLIFIIIIAIITRYHIYPID  578 (702)
T ss_pred             CCceEEEEEeCCCCCCCcccccchhhhhhhcCCCCCCCCceEEEeCCCchHHHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence            789999999999877654443445544  457888889999999999999999999999999999999999999999999


Q ss_pred             Ccc----hhHHHHHHHHHhhceeeeccceeeeeehhhhhhcccc-ccCCCCccccccccccccccccccccccCcccccc
Q 003191          701 IHS----WWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSAR-ENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNI  775 (840)
Q Consensus       701 ~~~----~~~~~~~~~~~~~~~~~~~~g~v~~~W~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  775 (840)
                      .+.    ||+|++|+++|||+||++ ||.|+.+|   +||++++ |.+|.|+.|       +.+|.++.+++++++.+++
T Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~w---~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  647 (702)
T PLN02292        579 QNSNKYTLAYKSLIYLLVISISVVA-TSTAAMLW---NKKKYYKKSSQQVDNVD-------SPREIESSPQQLLVQRTNI  647 (702)
T ss_pred             CCCCCCccHHHHHHHHHHHHHHhhh-hhhHHHhh---cccccccchhccccccc-------cccccccCcccccccceee
Confidence            555    999999999999999999 55555444   5565555 666666553       3477888899999999999


Q ss_pred             ccCCCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 003191          776 LYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD  839 (840)
Q Consensus       776 hyggRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~~c~s~~~~~~~~~~~f~fhs~sF~  839 (840)
                      |||+|||+++|+.++.    +++|||+||||++|+++||++|++    +.++|  |||||+|||
T Consensus       648 ~~g~rp~~~~i~~~~~----~~~vgvlv~gp~~~~~~va~~c~s----~~~~~--~~~~s~sf~  701 (702)
T PLN02292        648 HYGERPNLNKLLVGLK----GSSVGVLVCGPKKMRQKVAKICSS----GLAEN--LHFESISFS  701 (702)
T ss_pred             eccCCCCHHHHHHhcC----CCceeEEEECcHHHHHHHHHHHhc----CCCcc--eeEEeeccc
Confidence            9999999999996554    469999999999999999999999    44566  999999998

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=100.00  E-value=3.9e-120  Score=1067.65  Aligned_cols=655  Identities=30%  Similarity=0.552  Sum_probs=549.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cchhhhHhhhhcccceEecccchhhHHHHHHHHHHHHHHHHHHHhccCc
Q 003191           26 YVSALKWVLKILMWVIFVAWVALIFLYPSE-FGSELTQKFTRATSGTIFGITGSMFLIFSGPIAIIAFLAIAHLIISGEE  104 (840)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (840)
                      .++++||+||++||++|+||+++|||+||+ |+++|++. .+.+++|+||+||++||+|++||++||++||+|||+.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pt~~~~~~~~~~-~~~~~~t~fg~~g~~~~~~~~p~~~~a~~~~~yl~~~~~~   80 (722)
T PLN02844          2 AKALTLLVLKLLMILIFAGWIALWILKPTNLWTRKWKQA-EDSARHTVFGYYGLNFAVYTFPPIALAIIGLVYLSLLSQE   80 (722)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHheeeCCHHHHhhhhhH-HhcccCceecccchhhHhHhhHHHHHHHHHHHheeecccc
Confidence            478899999999999999999999999999 88888884 5557899999999999999999999999999999999886


Q ss_pred             ccccccCCCCCcccccccceEeeCccccchHHHHHHHHHHHHHHHhhheeeccccccccccCCCCCchhHHHHHHHhhch
Q 003191          105 NFERKKAPKHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRNISLLSEFRIPTKEQSIWMLELTGLR  184 (840)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~lv~gp~gipsr~E~l~I~~fi~l~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~va~R  184 (840)
                      +.  +++.++.+...||+|++|+||+||+|.+|.+++++|+++++|.++.|++++|+.+++.+....+.|+.++..+|+|
T Consensus        81 ~~--~~~~~~~~~~~~~~p~lv~~~~givs~~e~~~~~~f~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~R  158 (722)
T PLN02844         81 PH--RRRGARSATIGVSNPVIVNSFIGILSCLEILAVLLFFLFLAWTFYARISNDFKKLMPVKSLNLNLWQLKYLRVATR  158 (722)
T ss_pred             Cc--cccccccccccccCcEEecCCceeeeHHHHHHHHHHHHHHHHHHHHHHHhhhhhhCccccccchhHHHHHHHHHHH
Confidence            63  2222333455579999999999999999999999999999999999999999988776554456899999999999


Q ss_pred             hccc-------------hhhHHHHHhccchh----------------h-----hhHHHHhhhchHHHHHHhhhhcccccc
Q 003191          185 LDTM-------------YGWDILRWCSLRFT----------------G-----YFMIAWDIQGRLVQELLAWRNIGIANF  230 (840)
Q Consensus       185 tGii-------------Rnn~L~~LtG~s~T----------------g-----~y~i~w~~~~~~~~~~~~W~~~~~~~~  230 (840)
                      +|++             |||++.++|||+|.                +     +|+++|...+....++..|..+...++
T Consensus       159 ~G~la~~~Lpll~llv~Rnn~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~~~~~w~~~~~~~~  238 (722)
T PLN02844        159 FGLLAEACLALLLLPVLRGLALFRLLGIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEIWKWQKTGRIYL  238 (722)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhccCcchhh
Confidence            9998             99999999999991                1     444567777666556667866655578


Q ss_pred             hHHHHHHHHHHHHHhchhhhhhccchhHHHhhhhHHHHHHHhhhccccceeeehhhhHHHHHHHHHhhhhccccceEEEE
Q 003191          231 PGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLS  310 (840)
Q Consensus       231 ~GvvAlv~l~lL~vtSl~~iRr~~YElF~~~H~L~ivflv~l~~H~~~~~~~~v~~~ialw~lDRllR~~r~~~~~~vas  310 (840)
                      +|++|++++++|+++|++++||++||+|+++|+++++|++++++|+.....+|+++++++|++||++|.++.+....+.+
T Consensus       239 ~G~IAlv~l~iL~itSl~~iRR~~YElF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRllR~~~s~~~~~vvs  318 (722)
T PLN02844        239 AGEIALVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSRPETCILS  318 (722)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHhheEEEeeeEEEEE
Confidence            99999999999999999999999999999999999989999999998766678999999999999999998876666778


Q ss_pred             EEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhcCCCC
Q 003191          311 ASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESD  390 (840)
Q Consensus       311 v~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~~~~  390 (840)
                      ++.++++++++++++++.++|+||||+||++|..+++|||||||+|+|+++++.+++.||+.||||++|++.+....+.+
T Consensus       319 ~~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g  398 (722)
T PLN02844        319 ARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSE  398 (722)
T ss_pred             EEEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCC
Confidence            88899999999999988899999999999999989999999999998765568899999999999999999875432110


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          391 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPP  470 (840)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (840)
                      .                                                                               
T Consensus       399 ~-------------------------------------------------------------------------------  399 (722)
T PLN02844        399 T-------------------------------------------------------------------------------  399 (722)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCCCc
Q 003191          471 VPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP  550 (840)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~  550 (840)
                                                                              ...     .++++.||||||....
T Consensus       400 --------------------------------------------------------~~~-----~~~~v~VeGPYG~~s~  418 (722)
T PLN02844        400 --------------------------------------------------------NQM-----NCIPVAIEGPYGPASV  418 (722)
T ss_pred             --------------------------------------------------------Ccc-----cceEEEEECCccCCCC
Confidence                                                                    000     2358999999998766


Q ss_pred             CccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEE
Q 003191          551 YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIY  630 (840)
Q Consensus       551 ~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iy  630 (840)
                      +..++++++|||||+||||++|+++++.++.+. +.+.+++|+|+|++|+.+|+.|++++.+++... ..+..++++++|
T Consensus       419 ~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~-~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~-~~~~~~lkl~iy  496 (722)
T PLN02844        419 DFLRYDSLLLVAGGIGITPFLSILKEIASQSSS-RYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQ-SSNQLNLKLKVF  496 (722)
T ss_pred             CccCCCeEEEEEcCcCHHHHHHHHHHHHhcccc-ccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHh-HHHhcCceEEEE
Confidence            667899999999999999999999999875421 123457899999999999999999887654311 123357899999


Q ss_pred             EeCCCCCCC------cccccccccccccCCCCCCCceeEEecCCchhHHHHHHHHHHHHHHHHHHhhheeeeCCCCCc--
Q 003191          631 VTRETEPPL------EEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIH--  702 (840)
Q Consensus       631 VTr~~~~~~------~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  702 (840)
                      |||++.+..      ++++..++  .++.|+   ++.+.+||||+|+|+|+++++|++||+++++++++|||++.+.+  
T Consensus       497 VTRE~~~~~rl~~~i~~~~~~~~--~~~~~~---~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~~~~~~~i~~~~~~~~  571 (722)
T PLN02844        497 VTQEEKPNATLRELLNQFSQVQT--VNFSTK---CSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFIPSEHKSHS  571 (722)
T ss_pred             ECCCCCCCCchhhHhhccchhhh--cCCCCC---CCceEEeCCCchHHHHHHHHHHHHHHHHHHHHHheEEecccccccc
Confidence            999876532      22233333  556554   55599999999999999999999999999999999999444333  


Q ss_pred             ------------c-----hhHHHHHHHHHhhceeeeccceeeeeehhhhhhcccccc-CCCCcccccccccccccccccc
Q 003191          703 ------------S-----WWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSAREN-YKDDSIEVDNAQNVGTMAHNDI  764 (840)
Q Consensus       703 ------------~-----~~~~~~~~~~~~~~~~~~~~g~v~~~W~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  764 (840)
                                  +     ||++++|+++||++||++ ||.|+.+|+ |||++++.+. .+++.++.    +.+.++    
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~----  641 (722)
T PLN02844        572 GVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITC-STFVAIILR-WRRLKKEIPRVSQKQGIKP----EEGSME----  641 (722)
T ss_pred             chhcccccccccccCCCchHHHHHHHHHHHHHHhee-cceEeEeee-ccccccCCccccccccCCC----CCcccc----
Confidence                        3     999999999999999999 999999999 8888776655 34444432    112222    


Q ss_pred             ccccCccccccccCCCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHHHHHhccc-----CCCCCCceEEEEecccC
Q 003191          765 RKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSL-----MRECHDPIFHFHSHSFD  839 (840)
Q Consensus       765 ~~~~l~~~~~vhyggRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~~c~s~~~-----~~~~~~~~f~fhs~sF~  839 (840)
                      .+.++.+.+++|||+|||+++||++++++.++++|||+||||++|+++||++||++|.     .+.+.++.|||||+|||
T Consensus       642 ~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~hs~~f~  721 (722)
T PLN02844        642 KRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNFT  721 (722)
T ss_pred             ccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceeeeecccC
Confidence            4456778899999999999999999999999999999999999999999999999997     45556788999999999


Q ss_pred             C
Q 003191          840 L  840 (840)
Q Consensus       840 l  840 (840)
                      |
T Consensus       722 l  722 (722)
T PLN02844        722 L  722 (722)
T ss_pred             C
Confidence            7

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.3e-65  Score=601.65  Aligned_cols=565  Identities=26%  Similarity=0.425  Sum_probs=426.7

Q ss_pred             CccccccchhHHHH-------HHHHHHHHHHHHHHHHHHHhhhcccc-cchhhhHhhhhcccceEecccchhhHHHHHHH
Q 003191           16 DAVHYKQTPLYVSA-------LKWVLKILMWVIFVAWVALIFLYPSE-FGSELTQKFTRATSGTIFGITGSMFLIFSGPI   87 (840)
Q Consensus        16 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~~   87 (840)
                      +-+...++.+.-..       .+.+.+++|..++++| ..|++.+++ +...|.+..+.+-.+ +++..+..+++...|.
T Consensus        15 ~~d~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~ll~~~~~   92 (646)
T KOG0039|consen   15 SYDDKLQTFFDMYDKGDGKLTEEEVRELIMSSISANW-LSLIKKQTEEYAALIMEELDPDHKG-YITNEDLEILLLQIPT   92 (646)
T ss_pred             ChhHHHHHHHHHHhhhcCCccHHHHHHHHHHHHHhhh-hhhhhhhhhHHHHHhhhhccccccc-eeeecchhHHHHhchH
Confidence            33444455544433       5679999999999999 777777777 999999997665545 9999999999999999


Q ss_pred             HHHHHHHHHHHHhccCcccccccCC-CCCcccccccceEeeCccccchHHHHHHHHHHHHHHHhhheeecccc------c
Q 003191           88 AIIAFLAIAHLIISGEENFERKKAP-KHPRFRLWTFPVLVDGPFGVVSAAEFVGIVLFVVFIFWAVYTYTMRN------I  160 (840)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~lv~gp~gipsr~E~l~I~~fi~l~i~~~~~y~~~~------~  160 (840)
                      ..++..++.+ ....... ...+.. +.+..+.++++..+....+...+.+.+++.+++++.+|.+..|.+.+      +
T Consensus        93 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~~~~~y~~~~~~~~~g~  170 (646)
T KOG0039|consen   93 LLFAILLSFA-NLSLLLS-QPLKPTRRKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTWRFLQYVYLGTRHILGL  170 (646)
T ss_pred             HHHHHHHHHH-HHHhhhc-cccccccccccchheeeeeeeeccceEeeeeehHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            9999888886 2221111 111211 22345667777777778899999999999999999999887766554      1


Q ss_pred             cccccCCC-CC--chhHHHHHHHhhchhccc-------------hhhHHHHHhccchh--------------------h-
Q 003191          161 SLLSEFRI-PT--KEQSIWMLELTGLRLDTM-------------YGWDILRWCSLRFT--------------------G-  203 (840)
Q Consensus       161 ~~~~~~~~-~~--~~~~~~~l~~va~RtGii-------------Rnn~L~~LtG~s~T--------------------g-  203 (840)
                      ...-.... ..  .......+..+++|.|++             ||+.+++++|++++                    + 
T Consensus       171 ~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H~w~~~~~~~~~~ih~~  250 (646)
T KOG0039|consen  171 CLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNFFPFLVHGL  250 (646)
T ss_pred             eeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            21111111 11  124456667788888887             99999999999992                    0 


Q ss_pred             hhHHHHhhhchHHHHHHhhhhcccccchHHHHHHHHHHHHHhchhhhhhccchhHHHhhhhHHHHHHHhhhccc-----c
Q 003191          204 YFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVG-----D  278 (840)
Q Consensus       204 ~y~i~w~~~~~~~~~~~~W~~~~~~~~~GvvAlv~l~lL~vtSl~~iRr~~YElF~~~H~L~ivflv~l~~H~~-----~  278 (840)
                      .|+++|...+.+..+...|......+++|+++++++++|+++|++++||+.||.|+++|++++++++++++|..     .
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~~~e~F~ytH~l~~v~~illi~hg~~~~~~~  330 (646)
T KOG0039|consen  251 EYTISLASELFFLPKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRRFYEAFWYTHHLYIVFYILLIIHGGFRLLGT  330 (646)
T ss_pred             HHHHHHHHHhcccchhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            34455666554323344566566667999999999999999999999999999999999999988888888886     3


Q ss_pred             ceeeehhhhHHHHHHHHHhhhhccccceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCC
Q 003191          279 FVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSP  358 (840)
Q Consensus       279 ~~~~~v~~~ialw~lDRllR~~r~~~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp  358 (840)
                      .|. |+..++++|++||++|+.|++.+++++++..+|+|+++|+++||+.++|+||||+|+++|+++.||||||||+|+|
T Consensus       331 ~w~-~~~~p~~ly~~dR~~r~~r~~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp  409 (646)
T KOG0039|consen  331 TWM-YIAVPVLLYILDRILRFLRSQKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAP  409 (646)
T ss_pred             chh-HHHHHHHHHHHHHHHHHHHHhcCceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCC
Confidence            333 3334477999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEEEecCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCC
Q 003191          359 LEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV  438 (840)
Q Consensus       359 ~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (840)
                      +  +++++++||++||||++|++...+.++.. +                                              
T Consensus       410 ~--dd~lsvhIk~~g~wT~~L~~~~~~~~~~~-~----------------------------------------------  440 (646)
T KOG0039|consen  410 E--DDFLSVHIKALGDWTEKLRNAFSEVSQPP-E----------------------------------------------  440 (646)
T ss_pred             C--CCEEEEEEEecCcHHHHHHHHHhhhcccc-c----------------------------------------------
Confidence            4  58999999999999999999987422100 0                                              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCC
Q 003191          439 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQG  518 (840)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  518 (840)
                                                                    .                                 
T Consensus       441 ----------------------------------------------~---------------------------------  441 (646)
T KOG0039|consen  441 ----------------------------------------------S---------------------------------  441 (646)
T ss_pred             ----------------------------------------------c---------------------------------
Confidence                                                          0                                 


Q ss_pred             CCCCCCCCCCCCCCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCC----------CCC
Q 003191          519 SPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGK----------SCL  588 (840)
Q Consensus       519 ~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~----------~~~  588 (840)
                           +  ...     ..+++.||||||..+++..+||+++||+||+|+||++|++++++++.+.++          ...
T Consensus       442 -----~--~~~-----~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~  509 (646)
T KOG0039|consen  442 -----D--KSY-----PFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLK  509 (646)
T ss_pred             -----c--ccc-----cCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccce
Confidence                 0  000     234899999999999889999999999999999999999999999875443          235


Q ss_pred             CceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCCCCCCcccccccccccccCCCCCCCceeEEecCC
Q 003191          589 PRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTG  668 (840)
Q Consensus       589 ~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~~~~~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~  668 (840)
                      .++++++|.+|+..+++|+.+++.++...  ....-++++.|+|+..+..+...    +                     
T Consensus       510 ~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~--~~~~~~e~~~~~t~~~~~~d~~~----~---------------------  562 (646)
T KOG0039|consen  510 LKKVYFYWVTREQRSFEWFKGLLTEVEEY--DSSGVIELHNYVTSSYEEGDARS----A---------------------  562 (646)
T ss_pred             ecceeEEEEeccccchHHHHHHHHHHHHH--HhcCCchhheehhHhHhhhhhhh----H---------------------
Confidence            68899999999999999999998876421  12233789999998654322111    0                     


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhheeeeCCCCCcchhHHHHHHHHHhhceeeeccceeeeeehhhhhhccccccCCCCcc
Q 003191          669 NNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSI  748 (840)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~W~~~~~k~~~~~~~~~~~~  748 (840)
                                                              .+.+                    .++...++ +  .+++
T Consensus       563 ----------------------------------------~~~~--------------------~~~~~~~~-~--~~di  579 (646)
T KOG0039|consen  563 ----------------------------------------LIQM--------------------VQKLLHAK-N--GVDI  579 (646)
T ss_pred             ----------------------------------------HHHH--------------------HHhhcccc-c--Cccc
Confidence                                                    0000                    01111111 0  0011


Q ss_pred             ccccccccccccccccccccCccccccccCCCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHHHHHhcccCCCCCC
Q 003191          749 EVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHD  828 (840)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~l~~~~~vhyggRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~~c~s~~~~~~~~~  828 (840)
                      +                 +++  .+.+|+ |||||++++++.++.+++.+||||+|||++|.+++++.|++.+..   ..
T Consensus       580 ~-----------------~g~--~~~~~~-gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~---~~  636 (646)
T KOG0039|consen  580 V-----------------TGL--KVETHF-GRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSS---TA  636 (646)
T ss_pred             c-----------------ccc--eeeeeC-CCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccc---cC
Confidence            0                 111  135566 799999999999999988789999999999999999999998865   33


Q ss_pred             ceEEEEeccc
Q 003191          829 PIFHFHSHSF  838 (840)
Q Consensus       829 ~~f~fhs~sF  838 (840)
                      +.|+||+|||
T Consensus       637 ~~~~f~~E~F  646 (646)
T KOG0039|consen  637 TRFEFHKENF  646 (646)
T ss_pred             ceeeeeeccC
Confidence            4599999998

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.97  E-value=1.5e-29  Score=259.14  Aligned_cols=159  Identities=30%  Similarity=0.543  Sum_probs=129.8

Q ss_pred             EEEEEec-CceEEEEEeCCCCcccCCCcEEEEEEcCC-CCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhc
Q 003191          309 LSASCLP-CGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK  386 (840)
Q Consensus       309 asv~~Lp-~~vvrLtI~~p~~~~~~PGQhvfL~vP~i-s~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~  386 (840)
                      ++++.++ +++++++++.+..++++||||++|++|.. +.+|+|||||+|.+.++++.++|+||..+|+|+++.+.+...
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~   81 (210)
T cd06186           2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS   81 (210)
T ss_pred             eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence            5677888 99999999988888999999999999987 788999999999986435799999999977777777766432


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  466 (840)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (840)
                      .+.                                                                             
T Consensus        82 ~~~-----------------------------------------------------------------------------   84 (210)
T cd06186          82 PGG-----------------------------------------------------------------------------   84 (210)
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            110                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcC
Q 003191          467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  546 (840)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG  546 (840)
                                                                                  .       ...++.|+||||
T Consensus        85 ------------------------------------------------------------~-------~~~~v~v~GP~G   97 (210)
T cd06186          85 ------------------------------------------------------------G-------VSLKVLVEGPYG   97 (210)
T ss_pred             ------------------------------------------------------------C-------ceeEEEEECCCC
Confidence                                                                        0       223789999999


Q ss_pred             CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHH
Q 003191          547 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  613 (840)
Q Consensus       547 ~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~e  613 (840)
                      ........+++++|||||+||||+++++++++++.++  ....++|+|+|++|+.+++.|+.+++++
T Consensus        98 ~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~--~~~~~~v~l~w~~r~~~~~~~~~~~l~~  162 (210)
T cd06186          98 SSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK--TSRTRRVKLVWVVRDREDLEWFLDELRA  162 (210)
T ss_pred             CCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc--cCCccEEEEEEEECCHHHhHHHHHHHHh
Confidence            9863456899999999999999999999999876421  1135689999999999998898887753

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.5e-28  Score=263.09  Aligned_cols=214  Identities=23%  Similarity=0.280  Sum_probs=157.4

Q ss_pred             hhccchhHHHhhhhHHHHHHHhhhccccc--e-------eeehhhh-HHHHHH----HHHhhhhcc-ccceEEEEEEEec
Q 003191          251 RKHFFQLFFYTHQLYVVFVVFLALHVGDF--V-------FSMAAGG-IFLFIL----DRFLRFCQS-RRTVDVLSASCLP  315 (840)
Q Consensus       251 Rr~~YElF~~~H~L~ivflv~l~~H~~~~--~-------~~~v~~~-ialw~l----DRllR~~r~-~~~~~vasv~~Lp  315 (840)
                      -+..||.|.++|.++++..++..+|....  +       ..|...+ .+++++    ..+.+..++ +....++..+..+
T Consensus       148 ~~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~  227 (438)
T COG4097         148 LNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGN  227 (438)
T ss_pred             HhcCchhHHHHHHHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcC
Confidence            35699999999999998889999997421  1       1121111 122222    222233333 3556777778888


Q ss_pred             CceEEEEEeCCCCcccCCCcEEEEEEcC-CCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhcCCCCCCCC
Q 003191          316 CGTVELVLSKPANLRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVG  394 (840)
Q Consensus       316 ~~vvrLtI~~p~~~~~~PGQhvfL~vP~-is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~~~~~~~~  394 (840)
                      .+++++++...+.+-++||||+||.++. -++.-.||||||++.+  ..+++|.||+.||+||.|++.++.         
T Consensus       228 ~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~--~sel~FsIK~LGD~Tk~l~dnLk~---------  296 (438)
T COG4097         228 VDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSHE--GSELRFSIKALGDFTKTLKDNLKV---------  296 (438)
T ss_pred             cchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeCCC--CceEEEEehhhhhhhHHHHHhccC---------
Confidence            8899999998888889999999999984 3456789999999875  358999999999999999875421         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPP  474 (840)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (840)
                                                                                                      
T Consensus       297 --------------------------------------------------------------------------------  296 (438)
T COG4097         297 --------------------------------------------------------------------------------  296 (438)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCCCcCccC
Q 003191          475 QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLM  554 (840)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~~~  554 (840)
                                                                                 |+  ++.||||||.+..  ++
T Consensus       297 -----------------------------------------------------------G~--k~~vdGPYG~F~~--~~  313 (438)
T COG4097         297 -----------------------------------------------------------GT--KLEVDGPYGKFDF--ER  313 (438)
T ss_pred             -----------------------------------------------------------Cc--eEEEecCcceeec--cc
Confidence                                                                       13  6889999999754  34


Q ss_pred             C-ceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEE
Q 003191          555 Y-ENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFI  629 (840)
Q Consensus       555 y-d~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~i  629 (840)
                      + ++.|.||||+||||++|+++.+..+.      ..+.|+|++++|+.++.... ++++++.    .+..++.+|+
T Consensus       314 g~~~QVWIAGGIGITPFis~l~~l~~~~------s~~~V~L~Y~~~n~e~~~y~-~eLr~~~----qkl~~~~lHi  378 (438)
T COG4097         314 GLNTQVWIAGGIGITPFISMLFTLAERK------SDPPVHLFYCSRNWEEALYA-EELRALA----QKLPNVVLHI  378 (438)
T ss_pred             CCcccEEEecCcCcchHHHHHHhhcccc------cCCceEEEEEecCCchhHHH-HHHHHHH----hcCCCeEEEE
Confidence            4 45999999999999999999997643      23579999999999998654 4444442    2345666666

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.92  E-value=3.2e-23  Score=217.67  Aligned_cols=181  Identities=21%  Similarity=0.296  Sum_probs=139.0

Q ss_pred             HHHHhhhhcc-----ccceEEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEE
Q 003191          293 LDRFLRFCQS-----RRTVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSS  366 (840)
Q Consensus       293 lDRllR~~r~-----~~~~~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Ls  366 (840)
                      +||++|.++.     ...+++.+++.+.+++.++++..+.. ..|+||||++|.++..+...+|||||+|.++.+++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~   81 (243)
T cd06216           2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT   81 (243)
T ss_pred             chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence            5888888664     23567888888999999999997654 47999999999998656667899999998851247899


Q ss_pred             EEEEec--CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCC
Q 003191          367 VLIKVL--GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV  444 (840)
Q Consensus       367 f~IK~~--Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (840)
                      |+||..  |.+|+.|++.+.                                                            
T Consensus        82 ~~ik~~~~G~~s~~l~~~~~------------------------------------------------------------  101 (243)
T cd06216          82 LTVKAQPDGLVSNWLVNHLA------------------------------------------------------------  101 (243)
T ss_pred             EEEEEcCCCcchhHHHhcCC------------------------------------------------------------
Confidence            999998  888988865321                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003191          445 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRP  524 (840)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  524 (840)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (243)
T cd06216         102 --------------------------------------------------------------------------------  101 (243)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchH
Q 003191          525 PPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL  604 (840)
Q Consensus       525 ~~~~~~~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl  604 (840)
                              ||+  ++.|+||||.+..+...+++++|||||+||||++++++++.++.      ..+++.++|++|+.+++
T Consensus       102 --------~Gd--~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~------~~~~i~l~~~~r~~~~~  165 (243)
T cd06216         102 --------PGD--VVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG------PTADVVLLYYARTREDV  165 (243)
T ss_pred             --------CCC--EEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEEcCChhhh
Confidence                    013  57799999986543334789999999999999999999997653      23579999999999887


Q ss_pred             HHHHHHHHHccCCCCCCCCceEEEEEEeCC
Q 003191          605 SLLSNFYKESICPFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       605 ~wl~~~l~el~~~~~~~~~~l~I~iyVTr~  634 (840)
                      . +.++++++.    .+..++++++++|++
T Consensus       166 ~-~~~el~~l~----~~~~~~~~~~~~s~~  190 (243)
T cd06216         166 I-FADELRALA----AQHPNLRLHLLYTRE  190 (243)
T ss_pred             H-HHHHHHHHH----HhCCCeEEEEEEcCC
Confidence            4 455555553    234567888878764

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=99.91  E-value=2.5e-23  Score=215.94  Aligned_cols=164  Identities=23%  Similarity=0.343  Sum_probs=129.6

Q ss_pred             EEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHh
Q 003191          307 DVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYIL  384 (840)
Q Consensus       307 ~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~  384 (840)
                      ++.+++.+.+++++++++.+..++|+||||++|+++..   ++|||||+|.+++ ++.++|+||..  |.+|+.|.+.+.
T Consensus         2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~l~   77 (224)
T cd06189           2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHE-DGEIELHIRAVPGGSFSDYVFEELK   77 (224)
T ss_pred             EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCC-CCeEEEEEEecCCCccHHHHHHhcc
Confidence            57788889999999999987778899999999999753   4799999999864 47899999997  778998876431


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  464 (840)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (840)
                      .                                                                               
T Consensus        78 ~-------------------------------------------------------------------------------   78 (224)
T cd06189          78 E-------------------------------------------------------------------------------   78 (224)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 003191          465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP  544 (840)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGP  544 (840)
                                                                                           |+  ++.|+||
T Consensus        79 ---------------------------------------------------------------------G~--~v~i~gP   87 (224)
T cd06189          79 ---------------------------------------------------------------------NG--LVRIEGP   87 (224)
T ss_pred             ---------------------------------------------------------------------CC--EEEEecC
Confidence                                                                                 12  5789999


Q ss_pred             cCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCc
Q 003191          545 YGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLN  624 (840)
Q Consensus       545 YG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~  624 (840)
                      ||.+......+++++|||||+||||+++++++++.+.      ..++++|+|++|+.+++.+ .++++++.    .+..+
T Consensus        88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~-~~~l~~l~----~~~~~  156 (224)
T cd06189          88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------SKRPIHLYWGARTEEDLYL-DELLEAWA----EAHPN  156 (224)
T ss_pred             CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhccC-HHHHHHHH----HhCCC
Confidence            9997654345789999999999999999999998653      1357999999999999854 44455553    23356


Q ss_pred             eEEEEEEeCCC
Q 003191          625 LETFIYVTRET  635 (840)
Q Consensus       625 l~I~iyVTr~~  635 (840)
                      +++..++++++
T Consensus       157 ~~~~~~~s~~~  167 (224)
T cd06189         157 FTYVPVLSEPE  167 (224)
T ss_pred             eEEEEEeCCCC
Confidence            78877777653

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.91  E-value=4.1e-23  Score=215.15  Aligned_cols=167  Identities=19%  Similarity=0.272  Sum_probs=127.8

Q ss_pred             ceEEEEEEEecCceEEEEEeCCC--CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  380 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~--~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~  380 (840)
                      .+++.+++.+.+++.++++..+.  .++|+||||+.|++++..  ++|||||+|.+.+ ++.++|+||..  |.+|+.|.
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~-~~~l~l~vk~~~~G~~s~~l~   78 (232)
T cd06212           2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPAD-PGRLEFIIKKYPGGLFSSFLD   78 (232)
T ss_pred             ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCC-CCEEEEEEEECCCCchhhHHh
Confidence            45788899999999998887543  578999999999998543  6799999999864 47899999997  66787775


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          381 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE  460 (840)
Q Consensus       381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (840)
                      +.+..                                                                           
T Consensus        79 ~~l~~---------------------------------------------------------------------------   83 (232)
T cd06212          79 DGLAV---------------------------------------------------------------------------   83 (232)
T ss_pred             hcCCC---------------------------------------------------------------------------
Confidence            43210                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeee
Q 003191          461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS  540 (840)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~  540 (840)
                                                                                               |+  ++.
T Consensus        84 -------------------------------------------------------------------------G~--~v~   88 (232)
T cd06212          84 -------------------------------------------------------------------------GD--PVT   88 (232)
T ss_pred             -------------------------------------------------------------------------CC--EEE
Confidence                                                                                     12  578


Q ss_pred             eccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCC
Q 003191          541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  620 (840)
Q Consensus       541 VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~  620 (840)
                      ++||||.+......+++++|||||+||||++++++++.++.      ..++|+|+|++|+.+++.+. ++++++.    .
T Consensus        89 i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~-~~l~~l~----~  157 (232)
T cd06212          89 VTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG------SDRPVRFFYGARTARDLFYL-EEIAALG----E  157 (232)
T ss_pred             EEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC------CCCcEEEEEeccchHHhccH-HHHHHHH----H
Confidence            99999998654345789999999999999999999998653      13579999999999998654 4455543    1


Q ss_pred             CCCceEEEEEEeCCC
Q 003191          621 DKLNLETFIYVTRET  635 (840)
Q Consensus       621 ~~~~l~I~iyVTr~~  635 (840)
                      ...+++++..++++.
T Consensus       158 ~~~~~~~~~~~s~~~  172 (232)
T cd06212         158 KIPDFTFIPALSESP  172 (232)
T ss_pred             hCCCEEEEEEECCCC
Confidence            234677777777653

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.91  E-value=5.3e-23  Score=213.54  Aligned_cols=167  Identities=15%  Similarity=0.239  Sum_probs=130.3

Q ss_pred             EEEEEEEecCceEEEEEeCCCC--cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHH
Q 003191          307 DVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  382 (840)
Q Consensus       307 ~vasv~~Lp~~vvrLtI~~p~~--~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~  382 (840)
                      ++.+++.+.+++.+++++.+..  ..++||||++|+++..+...+|||||+|.+++ ++.++|+||..  |.+|+.|.+.
T Consensus         2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~   80 (231)
T cd06215           2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRVPGGLVSNWLHDN   80 (231)
T ss_pred             eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEcCCCcchHHHHhc
Confidence            5678888999999999998765  78999999999998666667899999999864 46799999998  7888877543


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  462 (840)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (840)
                      +..                                                                             
T Consensus        81 ~~~-----------------------------------------------------------------------------   83 (231)
T cd06215          81 LKV-----------------------------------------------------------------------------   83 (231)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec
Q 003191          463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  542 (840)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve  542 (840)
                                                                                             |+  ++.|+
T Consensus        84 -----------------------------------------------------------------------G~--~v~i~   90 (231)
T cd06215          84 -----------------------------------------------------------------------GD--ELWAS   90 (231)
T ss_pred             -----------------------------------------------------------------------CC--EEEEE
Confidence                                                                                   12  57899


Q ss_pred             cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191          543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  622 (840)
Q Consensus       543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~  622 (840)
                      ||||.+.......++++|||||+||||+++++++++++.      ..++++|+|++|+.+++.+ .+.++++.    .+.
T Consensus        91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~~l~~l~----~~~  159 (231)
T cd06215          91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR------PDADIVFIHSARSPADIIF-ADELEELA----RRH  159 (231)
T ss_pred             cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------CCCcEEEEEecCChhhhhH-HHHHHHHH----HHC
Confidence            999997543234789999999999999999999997643      1357999999999999864 44455553    123


Q ss_pred             CceEEEEEEeCCC
Q 003191          623 LNLETFIYVTRET  635 (840)
Q Consensus       623 ~~l~I~iyVTr~~  635 (840)
                      .++++++++|+++
T Consensus       160 ~~~~~~~~~~~~~  172 (231)
T cd06215         160 PNFRLHLILEQPA  172 (231)
T ss_pred             CCeEEEEEEccCC
Confidence            4688888888754

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>PRK08051 fre FMN reductase; Validated

Probab=99.91  E-value=3.6e-23  Score=216.48  Aligned_cols=165  Identities=21%  Similarity=0.239  Sum_probs=125.6

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCc--hhHHHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGE--WTENLRDY  382 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg--~TkkL~~~  382 (840)
                      ..++.+++.+++++.++++..+..++|+||||++|+++..   +.|||||+|.|.+ ++.++|+||..++  .+.++.+.
T Consensus         4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~-~~~l~~~v~~~~~~~~~~~~~~~   79 (232)
T PRK08051          4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPRE-KGFIELHIGASELNLYAMAVMER   79 (232)
T ss_pred             EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCC-CCcEEEEEEEcCCCcchHHHHHH
Confidence            4578888899999999999877778999999999998743   5699999999853 4789999999753  45555333


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  462 (840)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (840)
                      ++                                                                              
T Consensus        80 l~------------------------------------------------------------------------------   81 (232)
T PRK08051         80 IL------------------------------------------------------------------------------   81 (232)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            21                                                                              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec
Q 003191          463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  542 (840)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve  542 (840)
                                                                                            ||+  +|.|+
T Consensus        82 ----------------------------------------------------------------------~G~--~v~v~   89 (232)
T PRK08051         82 ----------------------------------------------------------------------KDG--EIEVD   89 (232)
T ss_pred             ----------------------------------------------------------------------CCC--EEEEE
Confidence                                                                                  013  68899


Q ss_pred             cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191          543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  622 (840)
Q Consensus       543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~  622 (840)
                      ||||.+.......++++|||||+||||+++++++++...      ..++++|+|++|+.+++ ++.+++.++.    .+.
T Consensus        90 gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~------~~~~v~l~~g~r~~~~~-~~~~el~~l~----~~~  158 (232)
T PRK08051         90 IPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG------PNRPITLYWGGREEDHL-YDLDELEALA----LKH  158 (232)
T ss_pred             cCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC------CCCcEEEEEEeccHHHh-hhhHHHHHHH----HHC
Confidence            999997654345689999999999999999999998653      13579999999999998 4555555553    123


Q ss_pred             CceEEEEEEeCC
Q 003191          623 LNLETFIYVTRE  634 (840)
Q Consensus       623 ~~l~I~iyVTr~  634 (840)
                      .+++++..++++
T Consensus       159 ~~~~~~~~~~~~  170 (232)
T PRK08051        159 PNLHFVPVVEQP  170 (232)
T ss_pred             CCcEEEEEeCCC
Confidence            457776666543

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.91  E-value=5.6e-23  Score=213.69  Aligned_cols=166  Identities=19%  Similarity=0.237  Sum_probs=128.6

Q ss_pred             eEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHH
Q 003191          306 VDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYI  383 (840)
Q Consensus       306 ~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l  383 (840)
                      .++.+++.+.++++++++..+..+.|+||||++|+++...  ..|||||+|.+.+ ++.++|+||..  |.+|+.|++.+
T Consensus         3 ~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~l   79 (227)
T cd06213           3 GTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQG-DGQLSFHIRKVPGGAFSGWLFGAD   79 (227)
T ss_pred             EEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCC-CCEEEEEEEECCCCcchHHHHhcC
Confidence            4678888899999999999876778999999999998543  5799999999864 57899999987  88899886543


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          384 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP  463 (840)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (840)
                      ..                                                                              
T Consensus        80 ~~------------------------------------------------------------------------------   81 (227)
T cd06213          80 RT------------------------------------------------------------------------------   81 (227)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecc
Q 003191          464 PQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG  543 (840)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeG  543 (840)
                                                                                            |+  ++.|+|
T Consensus        82 ----------------------------------------------------------------------G~--~v~i~g   89 (227)
T cd06213          82 ----------------------------------------------------------------------GE--RLTVRG   89 (227)
T ss_pred             ----------------------------------------------------------------------CC--EEEEeC
Confidence                                                                                  12  578999


Q ss_pred             CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCC
Q 003191          544 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL  623 (840)
Q Consensus       544 PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~  623 (840)
                      |||.+... ...++++|||||+||||++++++++.++.      ..++|.++|++|+.+++.+. ++++++..   ....
T Consensus        90 P~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~------~~~~i~l~~~~r~~~~~~~~-~~l~~l~~---~~~~  158 (227)
T cd06213          90 PFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAG------TKRDVTLLFGARTQRDLYAL-DEIAAIAA---RWRG  158 (227)
T ss_pred             CCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcC------CCCcEEEEEeeCCHHHhccH-HHHHHHHH---hccC
Confidence            99997543 34589999999999999999999997653      13579999999999998544 44545431   1234


Q ss_pred             ceEEEEEEeCCC
Q 003191          624 NLETFIYVTRET  635 (840)
Q Consensus       624 ~l~I~iyVTr~~  635 (840)
                      +++++.+++++.
T Consensus       159 ~~~~~~~~s~~~  170 (227)
T cd06213         159 RFRFIPVLSEEP  170 (227)
T ss_pred             CeEEEEEecCCC
Confidence            677777777653

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=99.91  E-value=9.7e-23  Score=214.31  Aligned_cols=172  Identities=18%  Similarity=0.219  Sum_probs=133.1

Q ss_pred             ccccceEEEEEEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCCC--CCceeceEeeeCCCCCCCeEEEEEEec--C
Q 003191          301 QSRRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--G  373 (840)
Q Consensus       301 r~~~~~~vasv~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~is--~~q~HPFTIaSsp~~~~~~Lsf~IK~~--G  373 (840)
                      |.++..++.+++.+.+++.++++..+..   +.|+||||+.|+++..+  ...+|||||+|.+.+  +.+.|.||..  |
T Consensus         4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~~~G   81 (247)
T cd06184           4 RGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKREPGG   81 (247)
T ss_pred             CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEcCCC
Confidence            3445667888999999999999987643   68999999999997433  567899999999864  5899999988  8


Q ss_pred             chhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCC
Q 003191          374 EWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP  453 (840)
Q Consensus       374 g~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (840)
                      ..|+.|.+.+.                                                                     
T Consensus        82 ~~s~~l~~~~~---------------------------------------------------------------------   92 (247)
T cd06184          82 LVSNYLHDNVK---------------------------------------------------------------------   92 (247)
T ss_pred             cchHHHHhcCC---------------------------------------------------------------------
Confidence            88888765321                                                                     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLP  533 (840)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p  533 (840)
                                                                                                     |
T Consensus        93 -------------------------------------------------------------------------------~   93 (247)
T cd06184          93 -------------------------------------------------------------------------------V   93 (247)
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           1


Q ss_pred             CCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHH
Q 003191          534 PTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  613 (840)
Q Consensus       534 g~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~e  613 (840)
                      |+  ++.|+||||.+......+++++|||||+||||++++++++.++.      ..++++|+|++|+.+++. +.+++++
T Consensus        94 Gd--~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~------~~~~i~l~~~~r~~~~~~-~~~~l~~  164 (247)
T cd06184          94 GD--VLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG------PGRPVTFIHAARNSAVHA-FRDELEE  164 (247)
T ss_pred             CC--EEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC------CCCcEEEEEEcCchhhHH-HHHHHHH
Confidence            13  57899999997554336789999999999999999999998652      135799999999999975 4555555


Q ss_pred             ccCCCCCCCCceEEEEEEeCCC
Q 003191          614 SICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       614 l~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      +.    .+..+++++++++++.
T Consensus       165 l~----~~~~~~~~~~~~s~~~  182 (247)
T cd06184         165 LA----ARLPNLKLHVFYSEPE  182 (247)
T ss_pred             HH----hhCCCeEEEEEECCCC
Confidence            53    1235788888888654

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=99.90  E-value=1.1e-22  Score=213.37  Aligned_cols=166  Identities=23%  Similarity=0.271  Sum_probs=128.9

Q ss_pred             EEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCC-CCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHh
Q 003191          308 VLSASCLPCGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYIL  384 (840)
Q Consensus       308 vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~i-s~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~  384 (840)
                      +.+++.+.+++++++++.+....|+||||+.|+++.. +...+|||||+|.+++  +.++|+||..  |..|+.|.+ +.
T Consensus         2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~~G~~s~~l~~-l~   78 (241)
T cd06195           2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVPDGPLTPRLFK-LK   78 (241)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEecCCCCchHHhc-CC
Confidence            5677888899999999987777899999999999865 6678899999998854  7899999976  788887742 10


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  464 (840)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (840)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (241)
T cd06195          79 --------------------------------------------------------------------------------   78 (241)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec-c
Q 003191          465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE-G  543 (840)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve-G  543 (840)
                                                                                          +|+  ++.++ |
T Consensus        79 --------------------------------------------------------------------~Gd--~v~v~~g   88 (241)
T cd06195          79 --------------------------------------------------------------------PGD--TIYVGKK   88 (241)
T ss_pred             --------------------------------------------------------------------CCC--EEEECcC
Confidence                                                                                013  57788 9


Q ss_pred             CcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191          544 PYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  622 (840)
Q Consensus       544 PYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~  622 (840)
                      |||.+..+.. ..++++|||||+||||++++++++....      ..++|+|+|++|+.+|+. +.++++++..   ...
T Consensus        89 P~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~------~~~~v~l~~~~r~~~d~~-~~~el~~l~~---~~~  158 (241)
T cd06195          89 PTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE------RFDKIVLVHGVRYAEELA-YQDEIEALAK---QYN  158 (241)
T ss_pred             CCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC------CCCcEEEEEccCCHHHhh-hHHHHHHHHh---hcC
Confidence            9999754333 4689999999999999999999997542      235799999999999985 5555655531   113


Q ss_pred             CceEEEEEEeCCCC
Q 003191          623 LNLETFIYVTRETE  636 (840)
Q Consensus       623 ~~l~I~iyVTr~~~  636 (840)
                      .+++++.++|++++
T Consensus       159 ~~~~~~~~~s~~~~  172 (241)
T cd06195         159 GKFRYVPIVSREKE  172 (241)
T ss_pred             CCEEEEEEECcCCc
Confidence            57888888887654

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=99.90  E-value=9.8e-23  Score=210.10  Aligned_cols=153  Identities=29%  Similarity=0.415  Sum_probs=116.2

Q ss_pred             CceEEEEEeCCCC-cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhcCCCCCCCC
Q 003191          316 CGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVG  394 (840)
Q Consensus       316 ~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~~~~~~~~  394 (840)
                      .++.++++..+.. ..++||||++|+++..+.+++|||||+|.+.+ ++.++|+||..|++|+.|.+.+..         
T Consensus         7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~G~~t~~l~~~l~~---------   76 (216)
T cd06198           7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKALGDYTRRLAERLKP---------   76 (216)
T ss_pred             cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeCChHHHHHHHhCCC---------
Confidence            3566777765544 68999999999998656678999999998864 479999999999999999754311         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPP  474 (840)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (840)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (216)
T cd06198          77 --------------------------------------------------------------------------------   76 (216)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCCCcCccC
Q 003191          475 QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLM  554 (840)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~~~  554 (840)
                                                                                 |+  ++.|+||||.+... ..
T Consensus        77 -----------------------------------------------------------G~--~v~i~gP~G~~~~~-~~   94 (216)
T cd06198          77 -----------------------------------------------------------GT--RVTVEGPYGRFTFD-DR   94 (216)
T ss_pred             -----------------------------------------------------------CC--EEEEECCCCCCccc-cc
Confidence                                                                       12  57789999997544 33


Q ss_pred             CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191          555 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  632 (840)
Q Consensus       555 yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT  632 (840)
                      +++++|||||+||||+++++++++++.      ..++++++|++|+.+++.+ .+.++++..    +. ++++++..+
T Consensus        95 ~~~~vlia~GtGiap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~~l~~l~~----~~-~~~~~~~~~  160 (216)
T cd06198          95 RARQIWIAGGIGITPFLALLEALAARG------DARPVTLFYCVRDPEDAVF-LDELRALAA----AA-GVVLHVIDS  160 (216)
T ss_pred             CceEEEEccccCHHHHHHHHHHHHhcC------CCceEEEEEEECCHHHhhh-HHHHHHHHH----hc-CeEEEEEeC
Confidence            789999999999999999999998653      1358999999999998854 455555531    12 456655433

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=99.90  E-value=1.6e-22  Score=210.51  Aligned_cols=145  Identities=19%  Similarity=0.243  Sum_probs=113.6

Q ss_pred             EEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCC----------------CCCceeceEeeeCCCCC--CCeEEEEE
Q 003191          311 ASCLPCGTVELVLSKPAN---LRYNALSFFFLQVREL----------------SWLQWHPFSVSSSPLEG--KYHSSVLI  369 (840)
Q Consensus       311 v~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~i----------------s~~q~HPFTIaSsp~~~--~~~Lsf~I  369 (840)
                      .+.+++++.++++..+..   +.|+||||++|+++..                +.-.++||||+|.|+++  .+.++|+|
T Consensus         3 ~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v   82 (220)
T cd06197           3 SEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV   82 (220)
T ss_pred             ceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence            456788999999987766   8999999999999742                11245789999999653  37899999


Q ss_pred             EecCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCC
Q 003191          370 KVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG  449 (840)
Q Consensus       370 K~~Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (840)
                      |+.|++|+.|++.+....+                                                             
T Consensus        83 k~~G~~T~~L~~~~~~~~~-------------------------------------------------------------  101 (220)
T cd06197          83 RKKGPVTGFLFQVARRLRE-------------------------------------------------------------  101 (220)
T ss_pred             EeCCCCCHHHHHhhhcccC-------------------------------------------------------------
Confidence            9999999999987543110                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          450 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH  529 (840)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  529 (840)
                                                                                                   .  
T Consensus       102 -----------------------------------------------------------------------------~--  102 (220)
T cd06197         102 -----------------------------------------------------------------------------Q--  102 (220)
T ss_pred             -----------------------------------------------------------------------------C--
Confidence                                                                                         0  


Q ss_pred             CCCCCCceeeeeccCcCCCCcCc---cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHH
Q 003191          530 PLLPPTKITASVEGPYGHEVPYH---LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSL  606 (840)
Q Consensus       530 ~~~pg~~~~V~VeGPYG~~~~~~---~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~w  606 (840)
                          |.  ++.|+||||.+....   ..+++++|||||+||||+++++++++++..     ..++|+|+|++|+.+++.+
T Consensus       103 ----G~--~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~-----~~~~v~l~~~~r~~~~~~~  171 (220)
T cd06197         103 ----GL--EVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRN-----TTWDITLLWSLREDDLPLV  171 (220)
T ss_pred             ----Cc--eEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhccc-----CCCcEEEEEEecchhhHHH
Confidence                02  588999999875432   357899999999999999999999986431     1357999999999998744

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=99.90  E-value=1.5e-22  Score=212.21  Aligned_cols=167  Identities=20%  Similarity=0.269  Sum_probs=128.6

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCc--ccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANL--RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  380 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~--~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~  380 (840)
                      ..++.+++.+.+++.++++..+...  .|+||||+.|+++..  .+.|||||+|.+++ ++.++|+||..  |..|+.|+
T Consensus         8 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~~~~-~~~l~l~i~~~~~G~~s~~l~   84 (238)
T cd06211           8 EGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGY--EGTRAFSIASSPSD-AGEIELHIRLVPGGIATTYVH   84 (238)
T ss_pred             eEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCC--CCccccccCCCCCC-CCEEEEEEEECCCCcchhhHh
Confidence            4678888999999999999876554  899999999999854  25799999999864 47899999997  77898885


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          381 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE  460 (840)
Q Consensus       381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (840)
                      +.+.                                                                            
T Consensus        85 ~~l~----------------------------------------------------------------------------   88 (238)
T cd06211          85 KQLK----------------------------------------------------------------------------   88 (238)
T ss_pred             hcCC----------------------------------------------------------------------------
Confidence            4221                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeee
Q 003191          461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS  540 (840)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~  540 (840)
                                                                                              ||+  +|.
T Consensus        89 ------------------------------------------------------------------------~G~--~v~   94 (238)
T cd06211          89 ------------------------------------------------------------------------EGD--ELE   94 (238)
T ss_pred             ------------------------------------------------------------------------CCC--EEE
Confidence                                                                                    012  578


Q ss_pred             eccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCC
Q 003191          541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  620 (840)
Q Consensus       541 VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~  620 (840)
                      |+||||.+.......++++|||||+||||+++++++++++..      .++|.|+|++|+.+++ ++.++++++.    .
T Consensus        95 i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~-~~~~~l~~l~----~  163 (238)
T cd06211          95 ISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD------TRKITLFFGARTRAEL-YYLDEFEALE----K  163 (238)
T ss_pred             EECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC------CCcEEEEEecCChhhh-ccHHHHHHHH----H
Confidence            999999976433345899999999999999999999986531      2579999999999998 4556666553    1


Q ss_pred             CCCceEEEEEEeCCC
Q 003191          621 DKLNLETFIYVTRET  635 (840)
Q Consensus       621 ~~~~l~I~iyVTr~~  635 (840)
                      +..+++++..++++.
T Consensus       164 ~~~~~~~~~~~s~~~  178 (238)
T cd06211         164 DHPNFKYVPALSREP  178 (238)
T ss_pred             hCCCeEEEEEECCCC
Confidence            234577777777654

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=99.90  E-value=2e-22  Score=210.32  Aligned_cols=166  Identities=19%  Similarity=0.251  Sum_probs=127.7

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCC------cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--Cchh
Q 003191          305 TVDVLSASCLPCGTVELVLSKPAN------LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWT  376 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~------~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~T  376 (840)
                      .+++.+++.+.+++++++++.+..      ..|+||||+.|+++..  .++|||||+|.+.+ ++.++|+||..  |.+|
T Consensus         3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~-~~~l~~~i~~~~~G~~s   79 (236)
T cd06210           3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNW-DGRLEFLIRLLPGGAFS   79 (236)
T ss_pred             eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCCC-CCEEEEEEEEcCCCccc
Confidence            457888899999999999987653      6899999999999843  36799999999864 47899999986  6678


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          377 ENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPP  456 (840)
Q Consensus       377 kkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (840)
                      +.|.+.+.                                                                        
T Consensus        80 ~~l~~~~~------------------------------------------------------------------------   87 (236)
T cd06210          80 TYLETRAK------------------------------------------------------------------------   87 (236)
T ss_pred             hhhhhCcC------------------------------------------------------------------------
Confidence            77754211                                                                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003191          457 LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK  536 (840)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~  536 (840)
                                                                                                  ||+ 
T Consensus        88 ----------------------------------------------------------------------------~Gd-   90 (236)
T cd06210          88 ----------------------------------------------------------------------------VGQ-   90 (236)
T ss_pred             ----------------------------------------------------------------------------CCC-
Confidence                                                                                        113 


Q ss_pred             eeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191          537 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  616 (840)
Q Consensus       537 ~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~  616 (840)
                       ++.|+||||.+..+...+++++|||||+||||++++++++.++.      ..++++|+|++|+.+++.+ .+.++++. 
T Consensus        91 -~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~~l~~l~-  161 (236)
T cd06210          91 -RLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG------EPQEARLFFGVNTEAELFY-LDELKRLA-  161 (236)
T ss_pred             -EEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC------CCceEEEEEecCCHHHhhh-HHHHHHHH-
Confidence             57899999997543345689999999999999999999987653      1357999999999999864 44455553 


Q ss_pred             CCCCCCCceEEEEEEeCC
Q 003191          617 PFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~  634 (840)
                         .+..+++++.+++++
T Consensus       162 ---~~~~~~~~~~~~s~~  176 (236)
T cd06210         162 ---DSLPNLTVRICVWRP  176 (236)
T ss_pred             ---HhCCCeEEEEEEcCC
Confidence               133468888888764

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=99.90  E-value=1.2e-22  Score=210.22  Aligned_cols=162  Identities=17%  Similarity=0.198  Sum_probs=125.4

Q ss_pred             EEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHhhc
Q 003191          309 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK  386 (840)
Q Consensus       309 asv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~~~  386 (840)
                      .+++.+++++++++++.+..+.|+||||++|+++..   ..|||||+|.+.+ ++.++|+||..  |.+|+.|.+.+.. 
T Consensus         2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~-~~~~~~~i~~~~~G~~s~~l~~~~~~-   76 (222)
T cd06194           2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDG-DNELEFHIRRKPNGAFSGWLGEEARP-   76 (222)
T ss_pred             ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCC-CCEEEEEEEeccCCccchHHHhccCC-
Confidence            456778999999999988788999999999999753   4599999999864 47899999986  6678877653211 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  466 (840)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (840)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (222)
T cd06194          77 --------------------------------------------------------------------------------   76 (222)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcC
Q 003191          467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  546 (840)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG  546 (840)
                                                                                         |+  ++.|+||||
T Consensus        77 -------------------------------------------------------------------G~--~v~i~gP~G   87 (222)
T cd06194          77 -------------------------------------------------------------------GH--ALRLQGPFG   87 (222)
T ss_pred             -------------------------------------------------------------------CC--EEEEecCcC
Confidence                                                                               12  577999999


Q ss_pred             CCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCce
Q 003191          547 HEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNL  625 (840)
Q Consensus       547 ~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l  625 (840)
                      .+.... ..+++++|||||+||||+++++++++.+.      ..++|+|+|++|+.+++. +.++++++.    .+..++
T Consensus        88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~-~~~el~~l~----~~~~~~  156 (222)
T cd06194          88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG------HQGEIRLVHGARDPDDLY-LHPALLWLA----REHPNF  156 (222)
T ss_pred             CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC------CCccEEEEEecCChhhcc-CHHHHHHHH----HHCCCe
Confidence            975532 46689999999999999999999998643      135799999999999985 455555553    123467


Q ss_pred             EEEEEEeCCC
Q 003191          626 ETFIYVTRET  635 (840)
Q Consensus       626 ~I~iyVTr~~  635 (840)
                      +++.+++++.
T Consensus       157 ~~~~~~~~~~  166 (222)
T cd06194         157 RYIPCVSEGS  166 (222)
T ss_pred             EEEEEEccCC
Confidence            7777777643

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=99.90  E-value=2.7e-22  Score=208.92  Aligned_cols=167  Identities=23%  Similarity=0.288  Sum_probs=129.0

Q ss_pred             EEEEEEEecCceEEEEEeCCCC--cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHH
Q 003191          307 DVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  382 (840)
Q Consensus       307 ~vasv~~Lp~~vvrLtI~~p~~--~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~  382 (840)
                      ++.+++.+.+++.++++..+..  +.|+||||+.|+++..+...+|||||+|.+.  ++.++|.||..  |..|+.|++.
T Consensus         2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~~G~~s~~l~~~   79 (231)
T cd06191           2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVPGGRVSNYLREH   79 (231)
T ss_pred             EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECCCCccchHHHhc
Confidence            5678888999999999986543  5899999999999754556789999999885  47899999987  7788887643


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  462 (840)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (840)
                      ++                                                                              
T Consensus        80 ~~------------------------------------------------------------------------------   81 (231)
T cd06191          80 IQ------------------------------------------------------------------------------   81 (231)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            21                                                                              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec
Q 003191          463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  542 (840)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve  542 (840)
                                                                                            ||+  ++.|+
T Consensus        82 ----------------------------------------------------------------------~Gd--~v~i~   89 (231)
T cd06191          82 ----------------------------------------------------------------------PGM--TVEVM   89 (231)
T ss_pred             ----------------------------------------------------------------------CCC--EEEEe
Confidence                                                                                  113  58899


Q ss_pred             cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191          543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  622 (840)
Q Consensus       543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~  622 (840)
                      ||||.+..+....++++|||||+||||++++++++....      ..+++.|+|++|+.+++.+ .++++++.    .+.
T Consensus        90 gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~------~~~~v~l~~~~r~~~~~~~-~~el~~l~----~~~  158 (231)
T cd06191          90 GPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA------PESDFTLIHSARTPADMIF-AQELRELA----DKP  158 (231)
T ss_pred             CCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEecCCHHHHhH-HHHHHHHH----HhC
Confidence            999986543345689999999999999999999987643      1357999999999999864 45555553    234


Q ss_pred             CceEEEEEEeCCCC
Q 003191          623 LNLETFIYVTRETE  636 (840)
Q Consensus       623 ~~l~I~iyVTr~~~  636 (840)
                      .+++++.++|+++.
T Consensus       159 ~~~~~~~~~s~~~~  172 (231)
T cd06191         159 QRLRLLCIFTRETL  172 (231)
T ss_pred             CCeEEEEEECCCCC
Confidence            57888888887643

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.90  E-value=4.2e-22  Score=207.34  Aligned_cols=168  Identities=18%  Similarity=0.225  Sum_probs=128.5

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCC--cccCCCcEEEEEEcC-CCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL  379 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~--~~~~PGQhvfL~vP~-is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL  379 (840)
                      .+++.+++.+.+++.++++..+..  ..++||||++|+++. -+...+||||++|.+.+ ++.++|+||..  |..|+.|
T Consensus         3 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~~~G~~s~~l   81 (235)
T cd06217           3 VLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRVPGGEVSPYL   81 (235)
T ss_pred             eEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEcCCCcchHHH
Confidence            567888999999999999997765  789999999999983 34456799999999864 46899999987  5577776


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          380 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE  459 (840)
Q Consensus       380 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (840)
                      .+.++                                                                           
T Consensus        82 ~~~l~---------------------------------------------------------------------------   86 (235)
T cd06217          82 HDEVK---------------------------------------------------------------------------   86 (235)
T ss_pred             HhcCC---------------------------------------------------------------------------
Confidence            54221                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee
Q 003191          460 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA  539 (840)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V  539 (840)
                                                                                               +|+  ++
T Consensus        87 -------------------------------------------------------------------------~Gd--~v   91 (235)
T cd06217          87 -------------------------------------------------------------------------VGD--LL   91 (235)
T ss_pred             -------------------------------------------------------------------------CCC--EE
Confidence                                                                                     012  57


Q ss_pred             eeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCC
Q 003191          540 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF  619 (840)
Q Consensus       540 ~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~  619 (840)
                      .|+||||.+.......++++|||||+||||+++++++++++..      .++++++|++|+.+++.+ .++++++.    
T Consensus        92 ~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~------~~~i~l~~~~r~~~~~~~-~~el~~~~----  160 (235)
T cd06217          92 EVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW------PVPFRLLYSARTAEDVIF-RDELEQLA----  160 (235)
T ss_pred             EEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC------CceEEEEEecCCHHHhhH-HHHHHHHH----
Confidence            8999999865432346899999999999999999999986531      357999999999999854 44455543    


Q ss_pred             CCCCceEEEEEEeCC
Q 003191          620 SDKLNLETFIYVTRE  634 (840)
Q Consensus       620 ~~~~~l~I~iyVTr~  634 (840)
                      .+..+++++.++|++
T Consensus       161 ~~~~~~~~~~~~s~~  175 (235)
T cd06217         161 RRHPNLHVTEALTRA  175 (235)
T ss_pred             HHCCCeEEEEEeCCC
Confidence            123457888778765

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=99.90  E-value=2.6e-22  Score=208.95  Aligned_cols=165  Identities=16%  Similarity=0.191  Sum_probs=126.7

Q ss_pred             EEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHhhc
Q 003191          309 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK  386 (840)
Q Consensus       309 asv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~~~  386 (840)
                      ++++.+.+++.+++++.+..+.|+||||++|+++..+  ..|||||+|.+.+ .+.++|+||..  |.+|+.|++.+.. 
T Consensus         2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~-~~~~~~~vk~~~~G~~s~~l~~~~~~-   77 (232)
T cd06190           2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANA-SGEWEFIIKRKPGGAASNALFDNLEP-   77 (232)
T ss_pred             CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCC-CCEEEEEEEEcCCCcchHHHhhcCCC-
Confidence            3566788999999998777778999999999998643  5699999998864 57899999987  7789888753210 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  466 (840)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (840)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (232)
T cd06190          78 --------------------------------------------------------------------------------   77 (232)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcC
Q 003191          467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  546 (840)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG  546 (840)
                                                                                         |+  ++.|+||||
T Consensus        78 -------------------------------------------------------------------g~--~v~v~gP~G   88 (232)
T cd06190          78 -------------------------------------------------------------------GD--ELELDGPYG   88 (232)
T ss_pred             -------------------------------------------------------------------CC--EEEEECCcc
Confidence                                                                               12  578999999


Q ss_pred             CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceE
Q 003191          547 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLE  626 (840)
Q Consensus       547 ~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~  626 (840)
                      .........++++|||||+||||++++++++.++...    ..++++|+|++|+.+++.+ .++++++.    ....+++
T Consensus        89 ~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~----~~~~v~l~~~~r~~~~~~~-~~el~~l~----~~~~~~~  159 (232)
T cd06190          89 LAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL----SDRPVDLFYGGRTPSDLCA-LDELSALV----ALGARLR  159 (232)
T ss_pred             cceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC----CCCeEEEEEeecCHHHHhh-HHHHHHHH----HhCCCEE
Confidence            9764334568999999999999999999999865211    2458999999999999864 45555553    2345677


Q ss_pred             EEEEEeCCC
Q 003191          627 TFIYVTRET  635 (840)
Q Consensus       627 I~iyVTr~~  635 (840)
                      +++.+|++.
T Consensus       160 ~~~~~s~~~  168 (232)
T cd06190         160 VTPAVSDAG  168 (232)
T ss_pred             EEEEeCCCC
Confidence            777777654

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=99.89  E-value=4.4e-22  Score=206.89  Aligned_cols=166  Identities=23%  Similarity=0.293  Sum_probs=128.5

Q ss_pred             ceEEEEEEEecCceEEEEEeCCC--CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  380 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~--~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~  380 (840)
                      ..++.+++.+++++++++++.+.  .+.|+||||+.|+++..  .++|||||+|.+++  +.++|+||..  |..|+.|+
T Consensus         3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ysi~s~~~~--~~i~~~i~~~~~G~~s~~l~   78 (228)
T cd06209           3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--DETRSYSFSSAPGD--PRLEFLIRLLPGGAMSSYLR   78 (228)
T ss_pred             eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--CcccccccccCCCC--CeEEEEEEEcCCCcchhhHH
Confidence            45788899999999999998766  57899999999999854  35799999998864  7899999986  66788776


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          381 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE  460 (840)
Q Consensus       381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (840)
                      +.+..                                                                           
T Consensus        79 ~~l~~---------------------------------------------------------------------------   83 (228)
T cd06209          79 DRAQP---------------------------------------------------------------------------   83 (228)
T ss_pred             hccCC---------------------------------------------------------------------------
Confidence            53210                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeee
Q 003191          461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS  540 (840)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~  540 (840)
                                                                                               |+  ++.
T Consensus        84 -------------------------------------------------------------------------G~--~v~   88 (228)
T cd06209          84 -------------------------------------------------------------------------GD--RLT   88 (228)
T ss_pred             -------------------------------------------------------------------------CC--EEE
Confidence                                                                                     12  477


Q ss_pred             eccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCC
Q 003191          541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  620 (840)
Q Consensus       541 VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~  620 (840)
                      |+||||..... ...++++|||||+||||++++++++.++.      ..++++|+|++|+.+++.+. ++++++.    .
T Consensus        89 v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~------~~~~v~l~~~~r~~~~~~~~-~~l~~l~----~  156 (228)
T cd06209          89 LTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG------SAHPVHLVYGVTRDADLVEL-DRLEALA----E  156 (228)
T ss_pred             EECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC------CCCcEEEEEecCCHHHhccH-HHHHHHH----H
Confidence            89999997543 34488999999999999999999998653      13579999999999998654 4444543    2


Q ss_pred             CCCceEEEEEEeCCCC
Q 003191          621 DKLNLETFIYVTRETE  636 (840)
Q Consensus       621 ~~~~l~I~iyVTr~~~  636 (840)
                      +..++++++++|++++
T Consensus       157 ~~~~~~~~~~~s~~~~  172 (228)
T cd06209         157 RLPGFSFRTVVADPDS  172 (228)
T ss_pred             hCCCeEEEEEEcCCCc
Confidence            3346888888887543

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=99.89  E-value=4.4e-22  Score=205.70  Aligned_cols=163  Identities=21%  Similarity=0.306  Sum_probs=125.7

Q ss_pred             EEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHhhc
Q 003191          309 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK  386 (840)
Q Consensus       309 asv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~~~  386 (840)
                      .+++.+.++++++++..+..+.++||||+.|+++..+. ++|||||+|.+.+ .+.++|+||..  |.+|+.|.+.++. 
T Consensus         2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~-~~~~~~~i~~~~~G~~s~~l~~~l~~-   78 (224)
T cd06187           2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNE-DGEIEFHVRAVPGGRVSNALHDELKV-   78 (224)
T ss_pred             eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCC-CCEEEEEEEeCCCCcchHHHhhcCcc-
Confidence            45677889999999987777889999999999985432 6799999998864 47899999997  8888888663211 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  466 (840)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (840)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (224)
T cd06187          79 --------------------------------------------------------------------------------   78 (224)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcC
Q 003191          467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  546 (840)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG  546 (840)
                                                                                         |+  ++.|+||||
T Consensus        79 -------------------------------------------------------------------G~--~v~i~gP~G   89 (224)
T cd06187          79 -------------------------------------------------------------------GD--RVRLSGPYG   89 (224)
T ss_pred             -------------------------------------------------------------------CC--EEEEeCCcc
Confidence                                                                               12  577999999


Q ss_pred             CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceE
Q 003191          547 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLE  626 (840)
Q Consensus       547 ~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~  626 (840)
                      ........+++++|||||+||||++++++++..+.      ..++|.|+|++|+.+++.+.+++ +++.    .+..+++
T Consensus        90 ~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~------~~~~v~l~~~~~~~~~~~~~~~l-~~~~----~~~~~~~  158 (224)
T cd06187          90 TFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG------EPRPVHLFFGARTERDLYDLEGL-LALA----ARHPWLR  158 (224)
T ss_pred             ceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhhcChHHH-HHHH----HhCCCeE
Confidence            87654344789999999999999999999998653      13579999999999998655444 3442    1334577


Q ss_pred             EEEEEeCC
Q 003191          627 TFIYVTRE  634 (840)
Q Consensus       627 I~iyVTr~  634 (840)
                      +++++|++
T Consensus       159 ~~~~~~~~  166 (224)
T cd06187         159 VVPVVSHE  166 (224)
T ss_pred             EEEEeCCC
Confidence            77777764

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.89  E-value=8.7e-22  Score=217.10  Aligned_cols=167  Identities=19%  Similarity=0.304  Sum_probs=129.3

Q ss_pred             cceEEEEEEEecCceEEEEEeCC--CCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKP--ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL  379 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p--~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL  379 (840)
                      ...++.+++.+.+++.++++..+  ..+.|+||||+.|.++..   ++|||||+|.+++ ++.++|+||..  |.+|+.|
T Consensus       103 ~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~-~~~l~~~ik~~~~G~~s~~l  178 (339)
T PRK07609        103 LPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHS-GGPLELHIRHMPGGVFTDHV  178 (339)
T ss_pred             EEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCC-CCEEEEEEEecCCCccHHHH
Confidence            45678888889999999999865  357899999999999752   5799999999864 47899999976  7778888


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          380 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE  459 (840)
Q Consensus       380 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (840)
                      ++.++.                                                                          
T Consensus       179 ~~~l~~--------------------------------------------------------------------------  184 (339)
T PRK07609        179 FGALKE--------------------------------------------------------------------------  184 (339)
T ss_pred             HHhccC--------------------------------------------------------------------------
Confidence            764311                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee
Q 003191          460 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA  539 (840)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V  539 (840)
                                                                                                |+  ++
T Consensus       185 --------------------------------------------------------------------------G~--~v  188 (339)
T PRK07609        185 --------------------------------------------------------------------------RD--IL  188 (339)
T ss_pred             --------------------------------------------------------------------------CC--EE
Confidence                                                                                      12  57


Q ss_pred             eeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCC
Q 003191          540 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF  619 (840)
Q Consensus       540 ~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~  619 (840)
                      .|+||||.+.......++++|||||+||||++++++++++..      ..++|+|+|++|+.+++. ++++++++.    
T Consensus       189 ~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~------~~~~i~l~~g~r~~~dl~-~~e~l~~~~----  257 (339)
T PRK07609        189 RIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG------IQRPVTLYWGARRPEDLY-LSALAEQWA----  257 (339)
T ss_pred             EEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC------CCCcEEEEEecCChHHhc-cHHHHHHHH----
Confidence            799999998654346689999999999999999999998643      135799999999999984 455544443    


Q ss_pred             CCCCceEEEEEEeCCC
Q 003191          620 SDKLNLETFIYVTRET  635 (840)
Q Consensus       620 ~~~~~l~I~iyVTr~~  635 (840)
                      .+..+++++..++++.
T Consensus       258 ~~~~~~~~~~~~s~~~  273 (339)
T PRK07609        258 EELPNFRYVPVVSDAL  273 (339)
T ss_pred             HhCCCeEEEEEecCCC
Confidence            1234678888888753

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=99.88  E-value=2.8e-21  Score=202.13  Aligned_cols=168  Identities=21%  Similarity=0.257  Sum_probs=127.9

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCC----cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPAN----LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  378 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~----~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk  378 (840)
                      .+++.+++.+.+++.+++++.+..    +.|+||||+.|+++..+..++||||++|.+++  +.++|+||..  |..|..
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~~G~~s~~   80 (241)
T cd06214           3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVPGGRFSNW   80 (241)
T ss_pred             eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcCCCccchh
Confidence            467888999999999999987654    57999999999998555667899999998764  4899999987  667777


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  458 (840)
Q Consensus       379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (840)
                      |.+.+.                                                                          
T Consensus        81 l~~~~~--------------------------------------------------------------------------   86 (241)
T cd06214          81 ANDELK--------------------------------------------------------------------------   86 (241)
T ss_pred             HHhccC--------------------------------------------------------------------------
Confidence            753221                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191          459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  538 (840)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~  538 (840)
                                                                                                ||.  +
T Consensus        87 --------------------------------------------------------------------------~G~--~   90 (241)
T cd06214          87 --------------------------------------------------------------------------AGD--T   90 (241)
T ss_pred             --------------------------------------------------------------------------CCC--E
Confidence                                                                                      012  4


Q ss_pred             eeeccCcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191          539 ASVEGPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  617 (840)
Q Consensus       539 V~VeGPYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~  617 (840)
                      +.|.||+|.+..... .+++++|||||+||||++++++++++...      .++++|+|++|+.+++.+ .+.++++.  
T Consensus        91 v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~------~~~v~l~~~~r~~~~~~~-~~~l~~l~--  161 (241)
T cd06214          91 LEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP------ASRVTLVYGNRTEASVIF-REELADLK--  161 (241)
T ss_pred             EEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC------CCcEEEEEEeCCHHHhhH-HHHHHHHH--
Confidence            778999998765433 58899999999999999999999886531      357999999999999854 45555553  


Q ss_pred             CCCCCCceEEEEEEeCC
Q 003191          618 FFSDKLNLETFIYVTRE  634 (840)
Q Consensus       618 ~~~~~~~l~I~iyVTr~  634 (840)
                       .....+++++.++|++
T Consensus       162 -~~~~~~~~~~~~~~~~  177 (241)
T cd06214         162 -ARYPDRLTVIHVLSRE  177 (241)
T ss_pred             -HhCcCceEEEEEecCC
Confidence             1123467777777753

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=99.88  E-value=2e-21  Score=199.45  Aligned_cols=162  Identities=20%  Similarity=0.313  Sum_probs=127.4

Q ss_pred             EEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHHHhhcCC
Q 003191          311 ASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSKSE  388 (840)
Q Consensus       311 v~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~l~~~~~  388 (840)
                      ++.+.+++.++++..+....|+||||+.|+++..+...+|||||+|.+.+ .+.++|+||..  |.+|+.|.+.   +. 
T Consensus         3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~~G~~s~~l~~~---~~-   77 (223)
T cd00322           3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVPGGPFSAWLHDL---KP-   77 (223)
T ss_pred             eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeCCCchhhHHhcC---CC-
Confidence            45667899999998877778999999999998655678999999999864 47899999999  9999988643   00 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          389 SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPH  468 (840)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (840)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (223)
T cd00322          78 --------------------------------------------------------------------------------   77 (223)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCC
Q 003191          469 PPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHE  548 (840)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~  548 (840)
                                                                                       |+  ++.|+||||.+
T Consensus        78 -----------------------------------------------------------------G~--~v~i~gP~G~~   90 (223)
T cd00322          78 -----------------------------------------------------------------GD--EVEVSGPGGDF   90 (223)
T ss_pred             -----------------------------------------------------------------CC--EEEEECCCccc
Confidence                                                                             12  57899999998


Q ss_pred             CcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEE
Q 003191          549 VPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETF  628 (840)
Q Consensus       549 ~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~  628 (840)
                      ......+++++|||||+||||++++++++.++.      ..++++|+|++|+.+++.+. ++++++.    ....+++++
T Consensus        91 ~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~-~el~~l~----~~~~~~~~~  159 (223)
T cd00322          91 FLPLEESGPVVLIAGGIGITPFRSMLRHLAADK------PGGEITLLYGARTPADLLFL-DELEELA----KEGPNFRLV  159 (223)
T ss_pred             ccCcccCCcEEEEecCCchhHHHHHHHHHHhhC------CCCcEEEEEecCCHHHhhHH-HHHHHHH----HhCCCeEEE
Confidence            544467889999999999999999999998653      13579999999999988544 4445543    134567887


Q ss_pred             EEEeCCC
Q 003191          629 IYVTRET  635 (840)
Q Consensus       629 iyVTr~~  635 (840)
                      ++++++.
T Consensus       160 ~~~~~~~  166 (223)
T cd00322         160 LALSRES  166 (223)
T ss_pred             EEecCCC
Confidence            7777654

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=99.88  E-value=1.1e-21  Score=211.36  Aligned_cols=87  Identities=14%  Similarity=0.313  Sum_probs=65.4

Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  617 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~  617 (840)
                      ++.|.||||.+... ...++++|||||+||||+++++++++.+...     .++|+|+|++|+.+++.+ .++++++.  
T Consensus       134 ~v~i~gP~G~f~l~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~~-----~~~v~l~~g~r~~~d~~~-~~el~~l~--  204 (283)
T cd06188         134 KVTASGPFGEFFIK-DTDREMVFIGGGAGMAPLRSHIFHLLKTLKS-----KRKISFWYGARSLKELFY-QEEFEALE--  204 (283)
T ss_pred             EEEEECcccccccc-CCCCcEEEEEecccHhHHHHHHHHHHhcCCC-----CceEEEEEecCCHHHhhH-HHHHHHHH--
Confidence            57899999998654 4567999999999999999999998765311     358999999999999854 44445543  


Q ss_pred             CCCCCCceEEEEEEeCCC
Q 003191          618 FFSDKLNLETFIYVTRET  635 (840)
Q Consensus       618 ~~~~~~~l~I~iyVTr~~  635 (840)
                        .+..++++++.+|++.
T Consensus       205 --~~~~~~~~~~~~s~~~  220 (283)
T cd06188         205 --KEFPNFKYHPVLSEPQ  220 (283)
T ss_pred             --HHCCCeEEEEEECCCC
Confidence              1234577777777643

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.88  E-value=1.8e-21  Score=214.27  Aligned_cols=166  Identities=13%  Similarity=0.164  Sum_probs=125.1

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD  381 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~  381 (840)
                      ...++.+++.+.+++.++++..+..+.|+||||+.|.++.. ...+|||||+|.|.+ ++.++|+||..  |..|+.|++
T Consensus        10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~-~~~l~i~Vk~~~~G~~S~~L~~   87 (332)
T PRK10684         10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGV-SEFITLTVRRIDDGVGSQWLTR   87 (332)
T ss_pred             eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCC-CCcEEEEEEEcCCCcchhHHHh
Confidence            35678888889999999999877777899999999999742 235699999999864 46899999987  667887765


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  461 (840)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (840)
                      .+..                                                                            
T Consensus        88 ~l~~----------------------------------------------------------------------------   91 (332)
T PRK10684         88 DVKR----------------------------------------------------------------------------   91 (332)
T ss_pred             cCCC----------------------------------------------------------------------------
Confidence            3211                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191          462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  541 (840)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V  541 (840)
                                                                                              |+  ++.|
T Consensus        92 ------------------------------------------------------------------------Gd--~v~v   97 (332)
T PRK10684         92 ------------------------------------------------------------------------GD--YLWL   97 (332)
T ss_pred             ------------------------------------------------------------------------CC--EEEE
Confidence                                                                                    13  5778


Q ss_pred             ccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCC
Q 003191          542 EGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSD  621 (840)
Q Consensus       542 eGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~  621 (840)
                      .||+|.+.......++++|||||+||||+++++++++.+.      ..++|+|+|++|+.+++.+ .++++++.    .+
T Consensus        98 ~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~------~~~~v~l~y~~r~~~~~~~-~~el~~l~----~~  166 (332)
T PRK10684         98 SDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR------PQADVQVIFNVRTPQDVIF-ADEWRQLK----QR  166 (332)
T ss_pred             eCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------CCCCEEEEEeCCChHHhhh-HHHHHHHH----HH
Confidence            9999997643345678999999999999999999987643      1357999999999999864 44455543    12


Q ss_pred             CCceEEEEEEe
Q 003191          622 KLNLETFIYVT  632 (840)
Q Consensus       622 ~~~l~I~iyVT  632 (840)
                      ..+++++++.+
T Consensus       167 ~~~~~~~~~~~  177 (332)
T PRK10684        167 YPQLNLTLVAE  177 (332)
T ss_pred             CCCeEEEEEec
Confidence            23455554443

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=99.88  E-value=5.9e-23  Score=200.92  Aligned_cols=80  Identities=43%  Similarity=0.657  Sum_probs=60.2

Q ss_pred             CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCC
Q 003191          555 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       555 yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~  634 (840)
                      ||+++|||||+||||++|++++++++.++ +....++|+|+|++|+.+++.|+.++++++.+....  .++++++|+|++
T Consensus         1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~-~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~--~~~~~~iyvT~~   77 (156)
T PF08030_consen    1 YDNVVLVAGGSGITPILPILRDLLQRQNR-GSSRTRRIKLVWVVRDADELEWFSPELNELLELDRL--GNVEVHIYVTRE   77 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHHHHHHHHHHHT-T-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHH--TSEEEEEEETT-
T ss_pred             CCEEEEEecCcCHHHHHHHHHHHHHhhcc-ccccccceEEEEeeCchhhhhhhhHHHHHHHHHhcc--ccceEEEEEcCC
Confidence            79999999999999999999999988752 234578999999999999999999888776522211  579999999998


Q ss_pred             CCC
Q 003191          635 TEP  637 (840)
Q Consensus       635 ~~~  637 (840)
                      ...
T Consensus        78 ~~~   80 (156)
T PF08030_consen   78 SSA   80 (156)
T ss_dssp             ---
T ss_pred             ccc
Confidence            754

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=99.88  E-value=4.2e-21  Score=215.90  Aligned_cols=168  Identities=15%  Similarity=0.208  Sum_probs=129.1

Q ss_pred             cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCC--CCCceeceEeeeCCCCCCCeEEEEEEec--Cchh
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVREL--SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWT  376 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~i--s~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~T  376 (840)
                      +..++.+++.+.+++.++++..+.   ...|+||||+.|+++.-  ...++|||||+|.|+  ++.++|+||..  |..|
T Consensus       155 ~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~~~G~~S  232 (399)
T PRK13289        155 RDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKREAGGKVS  232 (399)
T ss_pred             EEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEECCCCeeh
Confidence            456788889999999999998643   35899999999999632  234579999999985  36899999998  8889


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          377 ENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPP  456 (840)
Q Consensus       377 kkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (840)
                      +.|++.++.                                                                       
T Consensus       233 ~~L~~~l~~-----------------------------------------------------------------------  241 (399)
T PRK13289        233 NYLHDHVNV-----------------------------------------------------------------------  241 (399)
T ss_pred             HHHhhcCCC-----------------------------------------------------------------------
Confidence            988653211                                                                       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003191          457 LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK  536 (840)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~  536 (840)
                                                                                                   |+ 
T Consensus       242 -----------------------------------------------------------------------------Gd-  243 (399)
T PRK13289        242 -----------------------------------------------------------------------------GD-  243 (399)
T ss_pred             -----------------------------------------------------------------------------CC-
Confidence                                                                                         13 


Q ss_pred             eeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191          537 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  616 (840)
Q Consensus       537 ~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~  616 (840)
                       +|.|.||||.+..+....++++|||||+||||++|++++++.+.      ..++|+|+|++|+.+++. +.++++++. 
T Consensus       244 -~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~-~~~eL~~l~-  314 (399)
T PRK13289        244 -VLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ------PKRPVHFIHAARNGGVHA-FRDEVEALA-  314 (399)
T ss_pred             -EEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC------CCCCEEEEEEeCChhhch-HHHHHHHHH-
Confidence             57899999997544335679999999999999999999997653      135899999999999985 455566653 


Q ss_pred             CCCCCCCceEEEEEEeCC
Q 003191          617 PFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~  634 (840)
                         .+..+++++.+++++
T Consensus       315 ---~~~~~~~~~~~~s~~  329 (399)
T PRK13289        315 ---ARHPNLKAHTWYREP  329 (399)
T ss_pred             ---HhCCCcEEEEEECCC
Confidence               123367888777764

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.87  E-value=3.7e-21  Score=212.76  Aligned_cols=167  Identities=21%  Similarity=0.275  Sum_probs=127.8

Q ss_pred             cceEEEEEEEecCceEEEEEeCC---CCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKP---ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  378 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p---~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk  378 (840)
                      ...++.+++.+.+++.++++..+   +.+.|+||||+.|++++.  -.+|||||+|.|.+ ++.++|+||..  |.+|+.
T Consensus       107 ~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySias~p~~-~~~l~~~ik~~~~G~~s~~  183 (340)
T PRK11872        107 ISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--DDWRSYSFANRPNA-TNQLQFLIRLLPDGVMSNY  183 (340)
T ss_pred             eeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--CceeecccCCCCCC-CCeEEEEEEECCCCcchhh
Confidence            35678889999999999999865   467899999999999853  24799999999864 57899999985  556777


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  458 (840)
Q Consensus       379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (840)
                      |++.+.                                                                          
T Consensus       184 L~~~l~--------------------------------------------------------------------------  189 (340)
T PRK11872        184 LRERCQ--------------------------------------------------------------------------  189 (340)
T ss_pred             HhhCCC--------------------------------------------------------------------------
Confidence            764321                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191          459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  538 (840)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~  538 (840)
                                                                                                ||+  +
T Consensus       190 --------------------------------------------------------------------------~G~--~  193 (340)
T PRK11872        190 --------------------------------------------------------------------------VGD--E  193 (340)
T ss_pred             --------------------------------------------------------------------------CCC--E
Confidence                                                                                      113  5


Q ss_pred             eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCC
Q 003191          539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF  618 (840)
Q Consensus       539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~  618 (840)
                      |.|+||||.+..+ ...++++|||||+||||+++++++++++.      ..++|+|+|++|+.+|+.+. ++++++.   
T Consensus       194 v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~------~~~~v~l~~g~r~~~dl~~~-~el~~~~---  262 (340)
T PRK11872        194 ILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQG------CSPPVHLYYGVRHAADLCEL-QRLAAYA---  262 (340)
T ss_pred             EEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcC------CCCcEEEEEecCChHHhccH-HHHHHHH---
Confidence            8899999997643 34579999999999999999999998643      13579999999999998654 4444443   


Q ss_pred             CCCCCceEEEEEEeCCC
Q 003191          619 FSDKLNLETFIYVTRET  635 (840)
Q Consensus       619 ~~~~~~l~I~iyVTr~~  635 (840)
                       .+..+++++..+++++
T Consensus       263 -~~~~~~~~~~~~s~~~  278 (340)
T PRK11872        263 -ERLPNFRYHPVVSKAS  278 (340)
T ss_pred             -HHCCCcEEEEEEeCCC
Confidence             2334688888887543

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.87  E-value=5.7e-21  Score=211.65  Aligned_cols=169  Identities=19%  Similarity=0.234  Sum_probs=125.7

Q ss_pred             ceEEEEEEEecCceEEEEEeCCC----CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPA----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  378 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~----~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk  378 (840)
                      .+++.+++.+.+++.++++..+.    .+.|+||||+.|+++.-+....|||||+|.++  ++.++|.||..  |..|+.
T Consensus         3 ~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~~~G~~S~~   80 (352)
T TIGR02160         3 RLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKIPGGLFSTW   80 (352)
T ss_pred             EeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEeCCCcchHH
Confidence            46788889999999999998653    35899999999999744445679999999884  37899999987  456777


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  458 (840)
Q Consensus       379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (840)
                      |.+.+.                                                                          
T Consensus        81 l~~~l~--------------------------------------------------------------------------   86 (352)
T TIGR02160        81 ANDEIR--------------------------------------------------------------------------   86 (352)
T ss_pred             HHhcCC--------------------------------------------------------------------------
Confidence            654321                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191          459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  538 (840)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~  538 (840)
                                                                                                +|+  +
T Consensus        87 --------------------------------------------------------------------------~Gd--~   90 (352)
T TIGR02160        87 --------------------------------------------------------------------------PGD--T   90 (352)
T ss_pred             --------------------------------------------------------------------------CCC--E
Confidence                                                                                      113  5


Q ss_pred             eeeccCcCCCCcCcc--CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191          539 ASVEGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  616 (840)
Q Consensus       539 V~VeGPYG~~~~~~~--~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~  616 (840)
                      +.|.||+|.+..+..  ..++++|||||+||||+++++++++.+.      ..++|+|+|++|+.+++.+. ++++++..
T Consensus        91 v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~------~~~~v~l~~~~r~~~d~~~~-~el~~l~~  163 (352)
T TIGR02160        91 LEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE------PRSTFTLVYGNRRTASVMFA-EELADLKD  163 (352)
T ss_pred             EEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC------CCceEEEEEEeCCHHHHHHH-HHHHHHHH
Confidence            778999999754322  3479999999999999999999998653      13579999999999998554 44455431


Q ss_pred             CCCCCCCceEEEEEEeCCC
Q 003191          617 PFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~~  635 (840)
                         ....+++++.++++++
T Consensus       164 ---~~~~~~~~~~~~s~~~  179 (352)
T TIGR02160       164 ---KHPQRFHLAHVLSREP  179 (352)
T ss_pred             ---hCcCcEEEEEEecCCC
Confidence               1223577777777653

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=99.87  E-value=1e-20  Score=195.13  Aligned_cols=158  Identities=25%  Similarity=0.331  Sum_probs=121.7

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCC-CCceeceEeeeCCCCCCCeEEEEEEec---CchhHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELS-WLQWHPFSVSSSPLEGKYHSSVLIKVL---GEWTENLR  380 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is-~~q~HPFTIaSsp~~~~~~Lsf~IK~~---Gg~TkkL~  380 (840)
                      ..++.+++.+.+++.++++..+..+.|+||||+.|.++..+ ..++||||++|.+.+  +.++|+||..   |++|+.|.
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~~~~g~~s~~l~   79 (218)
T cd06196           2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSYPDHDGVTEQLG   79 (218)
T ss_pred             ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEcCCCCcHhHHHH
Confidence            45788899999999999999888889999999999997443 347899999999863  7899999985   67887773


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          381 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE  460 (840)
Q Consensus       381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (840)
                      +.   +                                                                          
T Consensus        80 ~l---~--------------------------------------------------------------------------   82 (218)
T cd06196          80 RL---Q--------------------------------------------------------------------------   82 (218)
T ss_pred             hC---C--------------------------------------------------------------------------
Confidence            21   0                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeee
Q 003191          461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS  540 (840)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~  540 (840)
                                                                                              ||+  ++.
T Consensus        83 ------------------------------------------------------------------------~G~--~v~   88 (218)
T cd06196          83 ------------------------------------------------------------------------PGD--TLL   88 (218)
T ss_pred             ------------------------------------------------------------------------CCC--EEE
Confidence                                                                                    113  577


Q ss_pred             eccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCC
Q 003191          541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  620 (840)
Q Consensus       541 VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~  620 (840)
                      ++||||.+..    .++++|||||+||||+++++++++.+.      ..++++|+|++|+.+++. +.++++++.     
T Consensus        89 i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~-~~~el~~l~-----  152 (218)
T cd06196          89 IEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG------KLEGNTLIFANKTEKDII-LKDELEKML-----  152 (218)
T ss_pred             EECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC------CCceEEEEEecCCHHHHh-hHHHHHHhh-----
Confidence            9999998632    268999999999999999999998643      135799999999999874 445555431     


Q ss_pred             CCCceEEEEEEeCC
Q 003191          621 DKLNLETFIYVTRE  634 (840)
Q Consensus       621 ~~~~l~I~iyVTr~  634 (840)
                         ++++..++|++
T Consensus       153 ---~~~~~~~~s~~  163 (218)
T cd06196         153 ---GLKFINVVTDE  163 (218)
T ss_pred             ---cceEEEEEcCC
Confidence               24555566653

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=99.87  E-value=1.1e-20  Score=200.74  Aligned_cols=160  Identities=22%  Similarity=0.366  Sum_probs=119.8

Q ss_pred             EEEEEecCceEEEEEeCCC----CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191          309 LSASCLPCGTVELVLSKPA----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  384 (840)
Q Consensus       309 asv~~Lp~~vvrLtI~~p~----~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~  384 (840)
                      .+++.+.+++.+++++.+.    .++|+||||++|+++..+   .|||||+|.+++ ++.++|+||..|.+|+.|.+ ++
T Consensus         2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~-~~~l~~~Ik~~G~~S~~L~~-l~   76 (253)
T cd06221           2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTR-RGPLELTIRRVGRVTEALHE-LK   76 (253)
T ss_pred             ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCC-CCeEEEEEEeCChhhHHHHc-CC
Confidence            4567778876666555432    378999999999998543   299999999864 57899999999999988753 10


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  464 (840)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (840)
                      .                                                                               
T Consensus        77 ~-------------------------------------------------------------------------------   77 (253)
T cd06221          77 P-------------------------------------------------------------------------------   77 (253)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 003191          465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP  544 (840)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGP  544 (840)
                                                                                           |.  ++.|+||
T Consensus        78 ---------------------------------------------------------------------G~--~v~i~gP   86 (253)
T cd06221          78 ---------------------------------------------------------------------GD--TVGLRGP   86 (253)
T ss_pred             ---------------------------------------------------------------------CC--EEEEECC
Confidence                                                                                 12  5789999


Q ss_pred             cCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCC
Q 003191          545 YGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL  623 (840)
Q Consensus       545 YG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~  623 (840)
                      ||....... .++++||||||+||||+++++++++++.+     ..++++|+|++|+.+++.+ .+.++++.    .+ .
T Consensus        87 ~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~-----~~~~i~Li~~~r~~~~~~~-~~~L~~l~----~~-~  155 (253)
T cd06221          87 FGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE-----DYGKVTLLYGARTPEDLLF-KEELKEWA----KR-S  155 (253)
T ss_pred             cCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc-----cCCcEEEEEecCChHHcch-HHHHHHHH----hc-C
Confidence            999543222 57899999999999999999999987531     1358999999999999854 55565654    12 5


Q ss_pred             ceEEEEEEeCC
Q 003191          624 NLETFIYVTRE  634 (840)
Q Consensus       624 ~l~I~iyVTr~  634 (840)
                      +++++++++++
T Consensus       156 ~~~~~~~~s~~  166 (253)
T cd06221         156 DVEVILTVDRA  166 (253)
T ss_pred             CeEEEEEeCCC
Confidence            67787777654

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=99.87  E-value=1.4e-20  Score=195.42  Aligned_cols=167  Identities=19%  Similarity=0.271  Sum_probs=126.4

Q ss_pred             EEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191          307 DVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD  381 (840)
Q Consensus       307 ~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~  381 (840)
                      ++.+++.+.+++.++++..+.   ...++||||+.|+++..+....||||++|.+.+ ++.++|+||..  |..|+.|.+
T Consensus         2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~~G~~s~~l~~   80 (234)
T cd06183           2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYPGGKMSQYLHS   80 (234)
T ss_pred             EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECCCCcchhHHhc
Confidence            567778888999999998765   368999999999998766678899999998854 46899999996  777877642


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  461 (840)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (840)
                       +.                                                                             
T Consensus        81 -~~-----------------------------------------------------------------------------   82 (234)
T cd06183          81 -LK-----------------------------------------------------------------------------   82 (234)
T ss_pred             -CC-----------------------------------------------------------------------------
Confidence             10                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191          462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  541 (840)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V  541 (840)
                                                                                             +|+  ++.|
T Consensus        83 -----------------------------------------------------------------------~G~--~v~i   89 (234)
T cd06183          83 -----------------------------------------------------------------------PGD--TVEI   89 (234)
T ss_pred             -----------------------------------------------------------------------CCC--EEEE
Confidence                                                                                   012  5789


Q ss_pred             ccCcCCCCcCccC-CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCC
Q 003191          542 EGPYGHEVPYHLM-YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS  620 (840)
Q Consensus       542 eGPYG~~~~~~~~-yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~  620 (840)
                      +||||.+...... +++++|||||+||||+++++++++.+..     ..++|+|+|++|+.+++ ++.++++++..   .
T Consensus        90 ~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~-----~~~~i~l~~~~r~~~~~-~~~~~l~~~~~---~  160 (234)
T cd06183          90 RGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE-----DKTKISLLYANRTEEDI-LLREELDELAK---K  160 (234)
T ss_pred             ECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC-----cCcEEEEEEecCCHHHh-hhHHHHHHHHH---h
Confidence            9999986543233 3899999999999999999999986531     13589999999999987 45555555531   1


Q ss_pred             CCCceEEEEEEeCC
Q 003191          621 DKLNLETFIYVTRE  634 (840)
Q Consensus       621 ~~~~l~I~iyVTr~  634 (840)
                      ...++++++++|++
T Consensus       161 ~~~~~~~~~~~~~~  174 (234)
T cd06183         161 HPDRFKVHYVLSRP  174 (234)
T ss_pred             CcccEEEEEEEcCC
Confidence            13567888777754

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=99.87  E-value=2.3e-20  Score=202.15  Aligned_cols=167  Identities=21%  Similarity=0.342  Sum_probs=124.0

Q ss_pred             cceEEEEEEEecCce--EEEEEeCC---CCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHH
Q 003191          304 RTVDVLSASCLPCGT--VELVLSKP---ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTEN  378 (840)
Q Consensus       304 ~~~~vasv~~Lp~~v--vrLtI~~p---~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~Tkk  378 (840)
                      +..++.+++.+.+++  +++++..+   ..+.|+||||++|+++...   .|||||+|.+.+ ++.++|+||..|.+|+.
T Consensus         6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~-~~~l~l~Ik~~G~~S~~   81 (289)
T PRK08345          6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTR-KGFFELCIRRAGRVTTV   81 (289)
T ss_pred             eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCC-CCEEEEEEEeCChHHHH
Confidence            356788888888874  55555444   2467999999999998543   389999998854 57899999999999997


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  458 (840)
Q Consensus       379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (840)
                      |.+ +.                                                                          
T Consensus        82 L~~-l~--------------------------------------------------------------------------   86 (289)
T PRK08345         82 IHR-LK--------------------------------------------------------------------------   86 (289)
T ss_pred             HHh-CC--------------------------------------------------------------------------
Confidence            742 10                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191          459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  538 (840)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~  538 (840)
                                                                                                ||+  +
T Consensus        87 --------------------------------------------------------------------------~Gd--~   90 (289)
T PRK08345         87 --------------------------------------------------------------------------EGD--I   90 (289)
T ss_pred             --------------------------------------------------------------------------CCC--E
Confidence                                                                                      012  5


Q ss_pred             eeeccCcCCCCc-CccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191          539 ASVEGPYGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  617 (840)
Q Consensus       539 V~VeGPYG~~~~-~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~  617 (840)
                      +.|+||||.... +....++++|||||+||||+++++++++.+..     ..++|+|+|++|+.+|+.+ .++++++.  
T Consensus        91 v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~-----~~~~v~l~~~~r~~~d~~~-~deL~~l~--  162 (289)
T PRK08345         91 VGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW-----KYGNITLIYGAKYYEDLLF-YDELIKDL--  162 (289)
T ss_pred             EEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC-----CCCcEEEEEecCCHHHhhH-HHHHHHHH--
Confidence            789999998433 21234689999999999999999999886431     1358999999999999864 45555553  


Q ss_pred             CCCCCCceEEEEEEeCCC
Q 003191          618 FFSDKLNLETFIYVTRET  635 (840)
Q Consensus       618 ~~~~~~~l~I~iyVTr~~  635 (840)
                        .+..+++++.++++++
T Consensus       163 --~~~~~~~~~~~~s~~~  178 (289)
T PRK08345        163 --AEAENVKIIQSVTRDP  178 (289)
T ss_pred             --hcCCCEEEEEEecCCC
Confidence              2345788888888754

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=99.85  E-value=7.4e-20  Score=193.54  Aligned_cols=145  Identities=26%  Similarity=0.352  Sum_probs=114.1

Q ss_pred             EEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcC-CCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhc
Q 003191          309 LSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK  386 (840)
Q Consensus       309 asv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~-is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~  386 (840)
                      .+++.+.+++.+++++.+. ...|+||||+.|+++. ...+.+||||++|.+.+ ++.++|+||..|.+|+.|.+.   +
T Consensus         2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~G~~s~~l~~l---~   77 (246)
T cd06218           2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVVGKGTRLLSEL---K   77 (246)
T ss_pred             cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEECcchHHHhcC---C
Confidence            4567788999999999876 5789999999999985 45678899999998753 478999999999998766321   0


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG  466 (840)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (840)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (246)
T cd06218          78 --------------------------------------------------------------------------------   77 (246)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcC
Q 003191          467 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG  546 (840)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG  546 (840)
                                                                                        +|+  ++.|+||||
T Consensus        78 ------------------------------------------------------------------~Gd--~v~i~gP~G   89 (246)
T cd06218          78 ------------------------------------------------------------------AGD--ELDVLGPLG   89 (246)
T ss_pred             ------------------------------------------------------------------CCC--EEEEEecCC
Confidence                                                                              012  588999999


Q ss_pred             CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191          547 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  614 (840)
Q Consensus       547 ~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el  614 (840)
                      .........++++|||||+||||++++++++..+        .++++|+|++|+.+++.+ .++++++
T Consensus        90 ~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~~~-~~eL~~l  148 (246)
T cd06218          90 NGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER--------GIKVTVLLGFRSADDLFL-VEEFEAL  148 (246)
T ss_pred             CCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc--------CCceEEEEEccchhhhhh-HHHHHhh
Confidence            7443323578999999999999999999998752        147999999999999754 4444444

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=99.85  E-value=1.1e-19  Score=186.47  Aligned_cols=141  Identities=13%  Similarity=0.160  Sum_probs=108.0

Q ss_pred             EEEEecCceEEEEEeCCCCc---ccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecC---chhHHHHHHH
Q 003191          310 SASCLPCGTVELVLSKPANL---RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLG---EWTENLRDYI  383 (840)
Q Consensus       310 sv~~Lp~~vvrLtI~~p~~~---~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~G---g~TkkL~~~l  383 (840)
                      +++.+.+++++++++.+...   .|+||||+.|+++.   .+.|||||+|.+.+ ++.+.|+||..+   +.|+.|.+.+
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~-~~~l~~~v~~~~~g~~~s~~l~~~~   77 (211)
T cd06185           2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPAD-RDRYRIAVLREPASRGGSRYMHELL   77 (211)
T ss_pred             ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCC-CCEEEEEEEeccCCCchHHHHHhcC
Confidence            45678899999999987653   89999999999975   35799999998864 588999999864   2576665421


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          384 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP  463 (840)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (840)
                      .                                                                               
T Consensus        78 ~-------------------------------------------------------------------------------   78 (211)
T cd06185          78 R-------------------------------------------------------------------------------   78 (211)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecc
Q 003191          464 PQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG  543 (840)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeG  543 (840)
                                                                                           +|+  ++.|+|
T Consensus        79 ---------------------------------------------------------------------~Gd--~v~i~g   87 (211)
T cd06185          79 ---------------------------------------------------------------------VGD--ELEVSA   87 (211)
T ss_pred             ---------------------------------------------------------------------CCC--EEEEcC
Confidence                                                                                 012  577999


Q ss_pred             CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191          544 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  614 (840)
Q Consensus       544 PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el  614 (840)
                      |||.+... ...++++|||||+||||++++++++.+.        .++++++|++|+.+++.+. +.++++
T Consensus        88 P~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~--------~~~v~l~~~~r~~~~~~~~-~~l~~~  148 (211)
T cd06185          88 PRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR--------GADFELHYAGRSREDAAFL-DELAAL  148 (211)
T ss_pred             CccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC--------CCCEEEEEEeCCCcchhHH-HHHhhh
Confidence            99987543 3467999999999999999999998652        1479999999999998643 344443

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=99.84  E-value=2.5e-19  Score=189.89  Aligned_cols=168  Identities=19%  Similarity=0.144  Sum_probs=123.1

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD  381 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~  381 (840)
                      ...++.+++.+.++++++++..+. ..|+||||+.|.++.-+....|||||+|.|++  +.++|+||..  |..|+.|.+
T Consensus         5 ~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~--~~l~~~ik~~~~G~~S~~L~~   81 (248)
T PRK10926          5 VTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDN--PDLEFYLVTVPEGKLSPRLAA   81 (248)
T ss_pred             EEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCC--CeEEEEEEEeCCCCcChHHHh
Confidence            356788888899999999998653 37999999999996334445799999999853  5899999986  788887742


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  461 (840)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (840)
                       ++.                                                                            
T Consensus        82 -l~~----------------------------------------------------------------------------   84 (248)
T PRK10926         82 -LKP----------------------------------------------------------------------------   84 (248)
T ss_pred             -CCC----------------------------------------------------------------------------
Confidence             210                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191          462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  541 (840)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V  541 (840)
                                                                                              |+  +|.|
T Consensus        85 ------------------------------------------------------------------------Gd--~v~i   90 (248)
T PRK10926         85 ------------------------------------------------------------------------GD--EVQV   90 (248)
T ss_pred             ------------------------------------------------------------------------CC--EEEE
Confidence                                                                                    12  5789


Q ss_pred             ccCcCCCCc-Cc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCC
Q 003191          542 EGPYGHEVP-YH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF  619 (840)
Q Consensus       542 eGPYG~~~~-~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~  619 (840)
                      .||+|+... +. ...++++|||||+||||++++++++.+..      ..++++|+|++|+.+|+.+ .++++++.   .
T Consensus        91 ~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------~~~~v~l~~g~r~~~d~~~-~~el~~l~---~  160 (248)
T PRK10926         91 VSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------RFKNLVLVHAARYAADLSY-LPLMQELE---Q  160 (248)
T ss_pred             ecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC------CCCcEEEEEeCCcHHHHHH-HHHHHHHH---H
Confidence            999855432 21 13479999999999999999999986432      1357999999999998854 45555553   1


Q ss_pred             CCCCceEEEEEEeCCC
Q 003191          620 SDKLNLETFIYVTRET  635 (840)
Q Consensus       620 ~~~~~l~I~iyVTr~~  635 (840)
                      ....++++...+++++
T Consensus       161 ~~~~~~~v~~~~s~~~  176 (248)
T PRK10926        161 RYEGKLRIQTVVSRET  176 (248)
T ss_pred             hCcCCEEEEEEECCCC
Confidence            1224678888888743

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=99.83  E-value=5.5e-19  Score=187.09  Aligned_cols=143  Identities=20%  Similarity=0.332  Sum_probs=116.4

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  384 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~  384 (840)
                      ..++++++.+.+++.++++..+....|+||||++|+++......+|||||+|.+   ++.++|.||..|.+|+.|.+.  
T Consensus         6 ~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~G~~t~~l~~l--   80 (250)
T PRK00054          6 NMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKVGEGTKKLSKL--   80 (250)
T ss_pred             EEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEcChHHHHHhcC--
Confidence            467888999999999999997767789999999999986666678999999987   379999999999999876421  


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  464 (840)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (840)
                       +                                                                              
T Consensus        81 -~------------------------------------------------------------------------------   81 (250)
T PRK00054         81 -K------------------------------------------------------------------------------   81 (250)
T ss_pred             -C------------------------------------------------------------------------------
Confidence             0                                                                              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 003191          465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP  544 (840)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGP  544 (840)
                                                                                          ||+  ++.|+||
T Consensus        82 --------------------------------------------------------------------~G~--~v~i~gP   91 (250)
T PRK00054         82 --------------------------------------------------------------------EGD--ELDIRGP   91 (250)
T ss_pred             --------------------------------------------------------------------CCC--EEEEEcc
Confidence                                                                                013  5889999


Q ss_pred             cCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHH
Q 003191          545 YGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN  609 (840)
Q Consensus       545 YG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~  609 (840)
                      ||.........++++|||||+||||++++++++.++.        ++++++|++|+.+|+.+.++
T Consensus        92 ~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~--------~~v~l~~~~r~~~d~~~~~e  148 (250)
T PRK00054         92 LGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKKG--------VEVTTVLGARTKDEVIFEEE  148 (250)
T ss_pred             cCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHcC--------CcEEEEEEcCCHHHhhhHHH
Confidence            9984332236789999999999999999999987532        36999999999999864433

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=99.83  E-value=3.7e-19  Score=187.25  Aligned_cols=144  Identities=25%  Similarity=0.358  Sum_probs=113.6

Q ss_pred             EEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhhcC
Q 003191          309 LSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKS  387 (840)
Q Consensus       309 asv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~~~  387 (840)
                      .+++.+.+++.+++++.+. ...++||||++|+++......+|||||+|.+.+ ++.++|+||..|..|+.|.+ +.   
T Consensus         2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~~G~~t~~l~~-~~---   76 (243)
T cd06192           2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEIRGPKTKLIAE-LK---   76 (243)
T ss_pred             ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEEcCchHHHHHh-CC---
Confidence            4567788999999998764 368999999999997544568899999999854 57999999999999987742 10   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          388 ESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGP  467 (840)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (840)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (243)
T cd06192          77 --------------------------------------------------------------------------------   76 (243)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCcCC
Q 003191          468 HPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGH  547 (840)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~  547 (840)
                                                                                       ||+  ++.|+||||.
T Consensus        77 -----------------------------------------------------------------~G~--~l~i~gP~G~   89 (243)
T cd06192          77 -----------------------------------------------------------------PGE--KLDVMGPLGN   89 (243)
T ss_pred             -----------------------------------------------------------------CCC--EEEEEccCCC
Confidence                                                                             012  5789999998


Q ss_pred             CCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHH
Q 003191          548 EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  613 (840)
Q Consensus       548 ~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~e  613 (840)
                      ........++++|||||+||||++++++++.++        .++++++|++|+.+|+.+ .+++++
T Consensus        90 ~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~--------~~~v~l~~~~r~~~d~~~-~~el~~  146 (243)
T cd06192          90 GFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN--------GNKVTVLAGAKKAKEEFL-DEYFEL  146 (243)
T ss_pred             CCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC--------CCeEEEEEecCcHHHHHH-HHHHHh
Confidence            755433478999999999999999999998753        147999999999999754 444443

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.83  E-value=2.8e-19  Score=202.57  Aligned_cols=87  Identities=15%  Similarity=0.404  Sum_probs=65.6

Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  617 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~  617 (840)
                      ++.|+||+|.+... ...++++|||||+||||+++++++++++.+.     .++++|+|++|+.+++.+.++ ++++.  
T Consensus       258 ~v~v~gP~G~f~~~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~~-----~~~v~L~~g~r~~~d~~~~~e-l~~l~--  328 (409)
T PRK05464        258 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLKS-----KRKISFWYGARSLREMFYVED-FDQLA--  328 (409)
T ss_pred             EEEEEccccCcEec-CCCceEEEEEeccChhHHHHHHHHHHhCCCC-----CceEEEEEecCCHHHhhHHHH-HHHHH--
Confidence            57799999998654 4568999999999999999999998865321     358999999999999865444 44443  


Q ss_pred             CCCCCCceEEEEEEeCCC
Q 003191          618 FFSDKLNLETFIYVTRET  635 (840)
Q Consensus       618 ~~~~~~~l~I~iyVTr~~  635 (840)
                        .+..++++++.++++.
T Consensus       329 --~~~~~~~~~~~~s~~~  344 (409)
T PRK05464        329 --AENPNFKWHVALSDPL  344 (409)
T ss_pred             --HhCCCeEEEEEEcCCC
Confidence              2335677777776543

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=99.82  E-value=8e-19  Score=193.19  Aligned_cols=176  Identities=9%  Similarity=0.066  Sum_probs=127.6

Q ss_pred             ccceEEEEEEEecCceEEEEEeCCC--CcccCCCcEEEEEEc-CC--CCCceeceEeeeCCCCCCCeEEEEEEec--Cch
Q 003191          303 RRTVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVR-EL--SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW  375 (840)
Q Consensus       303 ~~~~~vasv~~Lp~~vvrLtI~~p~--~~~~~PGQhvfL~vP-~i--s~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~  375 (840)
                      +..+++.+++.+.+++.++++..+.  .+.+.||||+.+.++ ..  ..-..++||++|.|++ ++.++|+||+.  |.+
T Consensus        52 ~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~~~G~~  130 (325)
T PTZ00274         52 YEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRKKDGLM  130 (325)
T ss_pred             eEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEcCCCcc
Confidence            3567888999999999999997643  578999999998876 22  1235799999999864 57899999995  566


Q ss_pred             hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003191          376 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP  455 (840)
Q Consensus       376 TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (840)
                      |+.|++ ++.                                                                      
T Consensus       131 S~~L~~-lk~----------------------------------------------------------------------  139 (325)
T PTZ00274        131 TNHLFG-MHV----------------------------------------------------------------------  139 (325)
T ss_pred             cHHHhc-CCC----------------------------------------------------------------------
Confidence            887763 211                                                                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT  535 (840)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~  535 (840)
                                                                                                    |+
T Consensus       140 ------------------------------------------------------------------------------Gd  141 (325)
T PTZ00274        140 ------------------------------------------------------------------------------GD  141 (325)
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          13


Q ss_pred             ceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc
Q 003191          536 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  615 (840)
Q Consensus       536 ~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~  615 (840)
                        ++.|.||+|....+....++++||||||||||+++++++++++..........+|+|+|++|+.+|+. +.++++++.
T Consensus       142 --~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~-~~~eL~~La  218 (325)
T PTZ00274        142 --KLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHIL-LKGLFDDLA  218 (325)
T ss_pred             --EEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhh-HHHHHHHHH
Confidence              57789998876433345589999999999999999999998753210001234899999999999985 455555653


Q ss_pred             CCCCCCCCceEEEEEEeCC
Q 003191          616 CPFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~  634 (840)
                      .   ....+++++..++++
T Consensus       219 ~---~~~~~f~v~~~ls~~  234 (325)
T PTZ00274        219 R---RYSNRFKVYYTIDQA  234 (325)
T ss_pred             H---hCCCcEEEEEEeCCC
Confidence            1   122357777777654

>PRK05713 hypothetical protein; Provisional

Probab=99.82  E-value=3.2e-19  Score=195.07  Aligned_cols=71  Identities=23%  Similarity=0.238  Sum_probs=58.8

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL  379 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL  379 (840)
                      ..++.+++.+.+++.+++++.+..+.|+||||+.|.++.   -.+|||||+|.|++ ++.++|+||.+  |.+|+.|
T Consensus        93 ~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~~-~~~l~~~I~~~~~G~~s~~l  165 (312)
T PRK05713         93 PARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGE-DPFLEFHIDCSRPGAFCDAA  165 (312)
T ss_pred             CeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCCC-CCeEEEEEEEcCCCccchhh
Confidence            568888999999999999987667899999999999863   25799999999864 57899999854  6677765

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.82  E-value=1.1e-18  Score=184.77  Aligned_cols=144  Identities=18%  Similarity=0.307  Sum_probs=113.1

Q ss_pred             EEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHhh
Q 003191          307 DVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILS  385 (840)
Q Consensus       307 ~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~~  385 (840)
                      ++.+++.+.+++++++++.+.. ..|+||||++|+++..  .++|||||+|.+.+ ++.++|+||..|+.|+.|.+. ..
T Consensus         2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~~-~~~~~~~vk~~G~~t~~l~~l-~~   77 (248)
T cd06219           2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDPE-KGTITIVVQVVGKSTRELATL-EE   77 (248)
T ss_pred             EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcCC-CCEEEEEEEeCCchHHHHHhc-CC
Confidence            5677888999999999987643 4799999999998632  35799999998753 578999999999999777321 10


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          386 KSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQ  465 (840)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (840)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (248)
T cd06219          78 --------------------------------------------------------------------------------   77 (248)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee-eeccC
Q 003191          466 GPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEGP  544 (840)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V-~VeGP  544 (840)
                                                                                          |+  ++ .++||
T Consensus        78 --------------------------------------------------------------------G~--~v~~i~gP   87 (248)
T cd06219          78 --------------------------------------------------------------------GD--KIHDVVGP   87 (248)
T ss_pred             --------------------------------------------------------------------CC--EeeeeecC
Confidence                                                                                12  46 69999


Q ss_pred             cCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191          545 YGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  614 (840)
Q Consensus       545 YG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el  614 (840)
                      ||.+... ...++++|||||+||||++++++++.+..        ++++|+|++|+.+++.+ .++++++
T Consensus        88 ~G~~~~~-~~~~~~lliagG~GiaP~~~~l~~~~~~~--------~~v~l~~~~r~~~~~~~-~~el~~l  147 (248)
T cd06219          88 LGKPSEI-ENYGTVVFVGGGVGIAPIYPIAKALKEAG--------NRVITIIGARTKDLVIL-EDEFRAV  147 (248)
T ss_pred             CCCCeec-CCCCeEEEEeCcccHHHHHHHHHHHHHcC--------CeEEEEEEcCCHHHhhh-HHHHHhh
Confidence            9997543 45789999999999999999999987531        47999999999999854 4555454

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.81  E-value=1.9e-18  Score=181.08  Aligned_cols=66  Identities=20%  Similarity=0.185  Sum_probs=57.1

Q ss_pred             EEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHH
Q 003191          307 DVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRD  381 (840)
Q Consensus       307 ~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~  381 (840)
                      ++.+++.+.+++.+++++.+  .+|+||||+.|+++..   ..|||||+|.|    +.++|+||..|.+|+.|.+
T Consensus         2 ~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~----~~l~~~v~~~G~~s~~L~~   67 (233)
T cd06220           2 TIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID----GPNSITVKKVGEATSALHD   67 (233)
T ss_pred             EEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC----CeEEEEEEecChHHHHHHh
Confidence            67788899999999999864  4899999999999754   35999999987    5899999999999998864

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=99.81  E-value=2e-18  Score=186.27  Aligned_cols=142  Identities=18%  Similarity=0.310  Sum_probs=112.5

Q ss_pred             eEEEEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191          306 VDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  384 (840)
Q Consensus       306 ~~vasv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~  384 (840)
                      .++.+++.+.+++.++++..+. ...++||||+.|+++..  -++|||||+|.+.+ ++.++|+||..|..|+.|.+. .
T Consensus         2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~--~~~rpySias~~~~-~~~i~l~vk~~G~~T~~L~~l-~   77 (281)
T PRK06222          2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEK--GERIPLTIADYDRE-KGTITIVFQAVGKSTRKLAEL-K   77 (281)
T ss_pred             cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCC--CCceeeEeeEEcCC-CCEEEEEEEeCCcHHHHHhcC-C
Confidence            3577888899999999998664 24789999999999743  34699999998754 578999999999999988521 0


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  464 (840)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (840)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (281)
T PRK06222         78 --------------------------------------------------------------------------------   77 (281)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee-eecc
Q 003191          465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEG  543 (840)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V-~VeG  543 (840)
                                                                                          ||+  ++ .|.|
T Consensus        78 --------------------------------------------------------------------~Gd--~v~~i~G   87 (281)
T PRK06222         78 --------------------------------------------------------------------EGD--SILDVVG   87 (281)
T ss_pred             --------------------------------------------------------------------CCC--EEeeEEc
Confidence                                                                                012  47 5999


Q ss_pred             CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHH
Q 003191          544 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  610 (840)
Q Consensus       544 PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~  610 (840)
                      |||++... ..+++++|||||+||||++++++++.++.        ++++++|++|+.+++.+.+++
T Consensus        88 P~G~~~~~-~~~~~~llIaGGiGiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~d~~~~~el  145 (281)
T PRK06222         88 PLGKPSEI-EKFGTVVCVGGGVGIAPVYPIAKALKEAG--------NKVITIIGARNKDLLILEDEM  145 (281)
T ss_pred             CCCCCccc-CCCCeEEEEeCcCcHHHHHHHHHHHHHCC--------CeEEEEEecCCHHHhhcHHHH
Confidence            99997543 45689999999999999999999986532        379999999999998654443

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.81  E-value=9.3e-19  Score=198.06  Aligned_cols=87  Identities=15%  Similarity=0.345  Sum_probs=65.0

Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  617 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~  617 (840)
                      ++.|+||||.+... ...++++|||||+||||+++++++++.+.+     ..++++|+|++|+.+++.+. ++++++.  
T Consensus       254 ~v~i~gP~G~f~l~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~-----~~~~v~l~~g~R~~~dl~~~-~el~~l~--  324 (405)
T TIGR01941       254 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYQ-EDFDQLE--  324 (405)
T ss_pred             EEEEEeccCCCeec-CCCCCEEEEecCcCcchHHHHHHHHHhcCC-----CCCeEEEEEecCCHHHHhHH-HHHHHHH--
Confidence            57789999998653 356789999999999999999998776431     13579999999999998654 4444543  


Q ss_pred             CCCCCCceEEEEEEeCCC
Q 003191          618 FFSDKLNLETFIYVTRET  635 (840)
Q Consensus       618 ~~~~~~~l~I~iyVTr~~  635 (840)
                        .+..+++++++++++.
T Consensus       325 --~~~~~~~~~~~~s~~~  340 (405)
T TIGR01941       325 --AENPNFVWHVALSDPQ  340 (405)
T ss_pred             --HhCCCeEEEEEeCCCC
Confidence              2345677877777643

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=99.81  E-value=1.5e-18  Score=189.66  Aligned_cols=93  Identities=19%  Similarity=0.224  Sum_probs=65.7

Q ss_pred             eeeeccCcCCCCcCc--cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc
Q 003191          538 TASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  615 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~--~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~  615 (840)
                      ++.|.||+|.+....  ...++++|||||+||||++|++++++.+...+. ....++.|+|++|+.+|+.+ .++++++.
T Consensus       137 ~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~-~~~~~v~L~~g~R~~~d~~~-~deL~~l~  214 (307)
T PLN03116        137 KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAF-KFGGLAWLFLGVANSDSLLY-DDEFERYL  214 (307)
T ss_pred             EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccc-cCCCcEEEEEecCCcccchH-HHHHHHHH
Confidence            688999999875421  334689999999999999999999876532111 11347999999999999854 45555553


Q ss_pred             CCCCCCCCceEEEEEEeCCC
Q 003191          616 CPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~~  635 (840)
                      .   ....+++++..++++.
T Consensus       215 ~---~~~~~~~~~~~~sr~~  231 (307)
T PLN03116        215 K---DYPDNFRYDYALSREQ  231 (307)
T ss_pred             H---hCCCcEEEEEEEccCC
Confidence            1   1123678888787654

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=99.81  E-value=3e-18  Score=183.25  Aligned_cols=145  Identities=17%  Similarity=0.217  Sum_probs=113.1

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  384 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~  384 (840)
                      ..++++++.+++++.++++..+  ..++||||+.|+++...   .|||||++.+   ++.++|+||..|..|+.|.+ ++
T Consensus         9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~---~~~~~~~Ik~~G~~S~~L~~-l~   79 (263)
T PRK08221          9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG---DGYIDLTIRRVGKVTDEIFN-LK   79 (263)
T ss_pred             cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC---CCEEEEEEEeCCchhhHHHh-CC
Confidence            4678889999999999999864  47899999999998543   3999998864   36899999999999987753 10


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  464 (840)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (840)
                                                                                                      
T Consensus        80 --------------------------------------------------------------------------------   79 (263)
T PRK08221         80 --------------------------------------------------------------------------------   79 (263)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 003191          465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP  544 (840)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGP  544 (840)
                                                                                          ||.  ++.|+||
T Consensus        80 --------------------------------------------------------------------~Gd--~v~v~gP   89 (263)
T PRK08221         80 --------------------------------------------------------------------EGD--KLFLRGP   89 (263)
T ss_pred             --------------------------------------------------------------------CCC--EEEEECC
Confidence                                                                                012  5779999


Q ss_pred             cCC-CCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191          545 YGH-EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  614 (840)
Q Consensus       545 YG~-~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el  614 (840)
                      ||. +..+....++++|||||+||||++|++++++++.+     ..++++|+|++|+.+++.+ .++++++
T Consensus        90 ~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~-----~~~~v~L~~g~r~~~~l~~-~~el~~~  154 (263)
T PRK08221         90 YGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ-----EIKSLDLILGFKNPDDILF-KEDLKRW  154 (263)
T ss_pred             CCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc-----cCceEEEEEecCCHHHhhH-HHHHHHH
Confidence            998 43332346799999999999999999999976431     1358999999999999855 4555554

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=99.80  E-value=3e-18  Score=185.23  Aligned_cols=93  Identities=19%  Similarity=0.269  Sum_probs=66.1

Q ss_pred             eeeeccCcCCCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191          538 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  616 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~  616 (840)
                      +|.|.||+|.+.... ...++++|||||+||||+++++++++.+.... ....+++.|+|++|+.+++.+ .+.++++. 
T Consensus       117 ~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~-~~~~~~v~L~~g~r~~~d~~~-~~el~~l~-  193 (286)
T cd06208         117 DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHAD-YKFTGLAWLFFGVPNSDSLLY-DDELEKYP-  193 (286)
T ss_pred             EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc-cCCCCCEEEEEEecCccchhH-HHHHHHHH-
Confidence            578899999875422 23468999999999999999999998652110 012457999999999999754 45555553 


Q ss_pred             CCCCCCCceEEEEEEeCCC
Q 003191          617 PFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~~  635 (840)
                        .....+++++..+++++
T Consensus       194 --~~~~~~~~~~~~~sr~~  210 (286)
T cd06208         194 --KQYPDNFRIDYAFSREQ  210 (286)
T ss_pred             --HhCCCcEEEEEEEcCCC
Confidence              11234678888888754

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>PRK05802 hypothetical protein; Provisional

Probab=99.80  E-value=3e-18  Score=188.34  Aligned_cols=76  Identities=20%  Similarity=0.187  Sum_probs=63.6

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR  380 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~  380 (840)
                      ...++.+++.+.+++.++++..|..   ..++||||++|+++..+.+..|||||++++.+ ++.++|.||..|..|+.|.
T Consensus        65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~~G~~T~~L~  143 (320)
T PRK05802         65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEIRGVKTKKIA  143 (320)
T ss_pred             EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEecChhHHHHh
Confidence            3567888899999999999987643   34799999999998655667899999998754 5889999999999999885

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=99.80  E-value=5.4e-18  Score=181.80  Aligned_cols=148  Identities=27%  Similarity=0.355  Sum_probs=123.7

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCCc--ccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPANL--RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL  379 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~~--~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL  379 (840)
                      ...++.+++...++++.+++..+...  .|+||||+-|.++.-+....+-|||+|+|.+ ++.+.|.||+.  |+.|+.|
T Consensus         6 ~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~~~G~~S~~L   84 (266)
T COG1018           6 RRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKREDGGGGSNWL   84 (266)
T ss_pred             EEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEeCCCcccHHH
Confidence            46688999999999999999988876  4999999999999666678999999999975 46899999998  6888888


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          380 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE  459 (840)
Q Consensus       380 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (840)
                      ++.++.                                                                          
T Consensus        85 h~~lk~--------------------------------------------------------------------------   90 (266)
T COG1018          85 HDHLKV--------------------------------------------------------------------------   90 (266)
T ss_pred             HhcCCC--------------------------------------------------------------------------
Confidence            765421                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee
Q 003191          460 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA  539 (840)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V  539 (840)
                                                                                                |+  ++
T Consensus        91 --------------------------------------------------------------------------Gd--~l   94 (266)
T COG1018          91 --------------------------------------------------------------------------GD--TL   94 (266)
T ss_pred             --------------------------------------------------------------------------CC--EE
Confidence                                                                                      24  46


Q ss_pred             eeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHH
Q 003191          540 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN  609 (840)
Q Consensus       540 ~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~  609 (840)
                      .|.+|.|.+..+...-++++||||||||||++||++++....      . ++|.|++++|+.+++.+.++
T Consensus        95 ~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~------~-~~v~l~h~~R~~~~~af~de  157 (266)
T COG1018          95 EVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG------P-ADVVLVHAARTPADLAFRDE  157 (266)
T ss_pred             EEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC------C-CCEEEEEecCChhhcchhhH
Confidence            679999998765445558999999999999999999987654      2 57999999999999987654

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=99.78  E-value=1.9e-20  Score=173.88  Aligned_cols=80  Identities=31%  Similarity=0.661  Sum_probs=0.0

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCC--CCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRD  381 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is--~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~  381 (840)
                      ++++++++.+++++++|+++++.. ++|+||||+||++|.++  .||||||||+|+++  ++.++|+||++||||++|++
T Consensus         3 ~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~g~~T~~L~~   80 (105)
T PF08022_consen    3 NVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKARGGWTKRLYE   80 (105)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeCCCchHHHHH
Confidence            457788999999999999999886 99999999999999999  56999999999986  58999999999999999999


Q ss_pred             HHhhc
Q 003191          382 YILSK  386 (840)
Q Consensus       382 ~l~~~  386 (840)
                      .+.+.
T Consensus        81 ~~~~~   85 (105)
T PF08022_consen   81 HLSES   85 (105)
T ss_dssp             -----
T ss_pred             HHhhh
Confidence            87653

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.77  E-value=1.8e-17  Score=177.79  Aligned_cols=90  Identities=16%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             eeeeccCcC-CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHcc
Q 003191          538 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  615 (840)
Q Consensus       538 ~V~VeGPYG-~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~  615 (840)
                      .+.|.||+| .+..+....+++||||||+||||+++++++++......  ....++.|+|++|+. +++.+ .+.++++.
T Consensus        97 ~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~--~~~~~v~l~~g~r~~~~d~~~-~del~~~~  173 (267)
T cd06182          97 KVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANG--KARGPAWLFFGCRNFASDYLY-REELQEAL  173 (267)
T ss_pred             EEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc--ccCCCEEEEEeCCCCcccccH-HHHHHHHH
Confidence            588999999 55433234679999999999999999999998642100  123579999999999 88854 45555553


Q ss_pred             CCCCCCCCceEEEEEEeCC
Q 003191          616 CPFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~  634 (840)
                          .+..+++++..++++
T Consensus       174 ----~~~~~~~~~~~~S~~  188 (267)
T cd06182         174 ----KDGALTRLDVAFSRE  188 (267)
T ss_pred             ----hCCCcceEEEEEccC
Confidence                234467888777764

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=99.77  E-value=1.4e-17  Score=181.47  Aligned_cols=204  Identities=20%  Similarity=0.292  Sum_probs=142.2

Q ss_pred             cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCC----CCceeceEeeeCCCCCCCeEEEEEEec----
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLEGKYHSSVLIKVL----  372 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is----~~q~HPFTIaSsp~~~~~~Lsf~IK~~----  372 (840)
                      +.+++.+++.+.+++.++++..+.   ...++||||+.|+++.-.    ....||||++|.+.+ ++.++|+||..    
T Consensus        34 ~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~  112 (300)
T PTZ00319         34 QHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGV  112 (300)
T ss_pred             EEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCC
Confidence            456788888999999888887532   367999999999997422    245799999998854 57899999985    


Q ss_pred             -------CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCC
Q 003191          373 -------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP  445 (840)
Q Consensus       373 -------Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (840)
                             |..|+.|.+ +                                                              
T Consensus       113 ~~~~~~~G~~S~~L~~-l--------------------------------------------------------------  129 (300)
T PTZ00319        113 HPSFPNGGRLSQHLYH-M--------------------------------------------------------------  129 (300)
T ss_pred             CCCCCCCCChhhhhhc-C--------------------------------------------------------------
Confidence                   666666521 1                                                              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          446 PPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPP  525 (840)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  525 (840)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (300)
T PTZ00319        130 --------------------------------------------------------------------------------  129 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCceeeeeccCcCCCCcCc---------------cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCc
Q 003191          526 PSRHPLLPPTKITASVEGPYGHEVPYH---------------LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPR  590 (840)
Q Consensus       526 ~~~~~~~pg~~~~V~VeGPYG~~~~~~---------------~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~  590 (840)
                            .+|+  ++.|+||+|.+...-               ...++++|||||+||||+++++++++++..     ..+
T Consensus       130 ------~~Gd--~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~-----~~~  196 (300)
T PTZ00319        130 ------KLGD--KIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE-----DRT  196 (300)
T ss_pred             ------CCCC--EEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCC-----CCc
Confidence                  1123  578899999863210               124689999999999999999999986531     124


Q ss_pred             eEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCCCCC--CcccccccccccccCCCCC------CCcee
Q 003191          591 NVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPP--LEEGELHKTMSSSIYPVPS------GCAMS  662 (840)
Q Consensus       591 kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~~~~--~~~~~i~~~~~~~f~P~~s------d~~i~  662 (840)
                      +++|+|++|+.+++.+.+++. ++.     +..+++++..++++..+.  ...+.+++..+...+|...      +...+
T Consensus       197 ~i~liyg~r~~~dl~~~~eL~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~v  270 (300)
T PTZ00319        197 KVFLVYANQTEDDILLRKELD-EAA-----KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMA  270 (300)
T ss_pred             eEEEEEecCCHHHhhHHHHHH-HHh-----hCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEE
Confidence            799999999999997665544 332     334678887777743211  1335555544444545322      34578


Q ss_pred             EEecCCch
Q 003191          663 VLVGTGNN  670 (840)
Q Consensus       663 ~v~Gp~~~  670 (840)
                      ++|||...
T Consensus       271 yiCGp~~m  278 (300)
T PTZ00319        271 LMCGPPPM  278 (300)
T ss_pred             EEECCHHH
Confidence            99999774

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.77  E-value=5.6e-17  Score=172.75  Aligned_cols=147  Identities=24%  Similarity=0.383  Sum_probs=115.6

Q ss_pred             eEEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEE--EecCchhHHHHHH
Q 003191          306 VDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLI--KVLGEWTENLRDY  382 (840)
Q Consensus       306 ~~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~I--K~~Gg~TkkL~~~  382 (840)
                      .++.+++.+++++.++++..+.. +.++||||+.|++|.   ....|||++|.+.+ ++.+.|+|  ++.|..|+.+.++
T Consensus        10 ~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~-~g~~~l~i~~~~~G~~T~~i~~~   85 (252)
T COG0543          10 YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDD-KGELELHIRVYEVGKVTKYIFGL   85 (252)
T ss_pred             cEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCc-CCcEEEEEEEEeCChHHHHHhhc
Confidence            67889999999998888876544 689999999999998   57799999999864 45555555  4579999988765


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  462 (840)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (840)
                         +.                                                                           
T Consensus        86 ---k~---------------------------------------------------------------------------   87 (252)
T COG0543          86 ---KE---------------------------------------------------------------------------   87 (252)
T ss_pred             ---cC---------------------------------------------------------------------------
Confidence               10                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec
Q 003191          463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  542 (840)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve  542 (840)
                                                                                             |+  .+.|+
T Consensus        88 -----------------------------------------------------------------------gd--~i~v~   94 (252)
T COG0543          88 -----------------------------------------------------------------------GD--KIRVR   94 (252)
T ss_pred             -----------------------------------------------------------------------CC--EEEEE
Confidence                                                                                   02  48899


Q ss_pred             cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191          543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  614 (840)
Q Consensus       543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el  614 (840)
                      ||||+........+.+++||||+|++|++++++++.++. +     ..+|+++|++|+.+++.+.++ ++++
T Consensus        95 GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~-----~~~V~~~~G~~~~~dl~~~~e-l~~~  159 (252)
T COG0543          95 GPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-D-----ANKVTLLYGARTAKDLLLLDE-LEEL  159 (252)
T ss_pred             cCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-C-----CceEEEEEeccChhhcccHHH-HHHh
Confidence            999998765334555999999999999999999998754 2     358999999999999965444 4444

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=99.77  E-value=3.1e-17  Score=183.12  Aligned_cols=94  Identities=20%  Similarity=0.281  Sum_probs=66.3

Q ss_pred             eeeeccCcCCCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191          538 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  616 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~  616 (840)
                      +|.|.||+|.+.... ....+++|||||+||||+++++++++.+...+. ....++.|+|++|+.+|+. +.++++++. 
T Consensus       197 ~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~-~~~~~v~Lf~G~R~~~dll-y~dELe~l~-  273 (367)
T PLN03115        197 EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPTSSSLL-YKEEFEKMK-  273 (367)
T ss_pred             EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccc-cCCCcEEEEEccCCHHHhh-HHHHHHHHH-
Confidence            588899999865322 234589999999999999999998765432111 1135799999999999884 445555553 


Q ss_pred             CCCCCCCceEEEEEEeCCCC
Q 003191          617 PFFSDKLNLETFIYVTRETE  636 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~~~  636 (840)
                        .....+++++..++|+++
T Consensus       274 --~~~p~~f~v~~a~SR~~~  291 (367)
T PLN03115        274 --EKAPENFRLDFAVSREQT  291 (367)
T ss_pred             --HhCCCCEEEEEEEcCCCc
Confidence              112347889988987654

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=99.76  E-value=2.6e-17  Score=174.14  Aligned_cols=85  Identities=8%  Similarity=0.029  Sum_probs=60.2

Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcc-hHHHHHHHHHHccC
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESIC  616 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~-dl~wl~~~l~el~~  616 (840)
                      +|.|.||.|+........++++|||||+||||+++++++++.+.       .+++.|++++|+.+ ++.+ .++++++. 
T Consensus        92 ~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-------~~~~~l~~g~r~~~~d~~~-~~el~~~~-  162 (245)
T cd06200          92 SVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAG-------RHRNWLLFGERQAAHDFFC-REELEAWQ-  162 (245)
T ss_pred             EEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-------CCCeEEEEecCCccccHhH-HHHHHHHH-
Confidence            58899987754332234578999999999999999999987542       23689999999984 6644 45555543 


Q ss_pred             CCCCCCCceEEEEEEeCC
Q 003191          617 PFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~  634 (840)
                         .+..++++++.++++
T Consensus       163 ---~~~~~~~~~~~~s~~  177 (245)
T cd06200         163 ---AAGHLARLDLAFSRD  177 (245)
T ss_pred             ---HCCCcceEEEEEccC
Confidence               133456677777764

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=99.75  E-value=4.1e-17  Score=174.35  Aligned_cols=193  Identities=15%  Similarity=0.162  Sum_probs=129.9

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  384 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~  384 (840)
                      .++++++...++++..++++.+  +.++||||+.|.++...   .||||+++.+   ++.++|+||..|..|..|.+ ++
T Consensus         7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~~---~~pySi~~~~---~~~l~~~Vk~~G~~S~~L~~-l~   77 (261)
T TIGR02911         7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKYG---EAPISVSGIG---EGYIDLTIRRVGKVTDEVFT-LK   77 (261)
T ss_pred             eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCCC---ccceecCCCC---CCeEEEEEEeCchhhHHHHc-CC
Confidence            4577777778888888888764  57999999999998532   4899998742   47899999999999987742 10


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  464 (840)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (840)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (261)
T TIGR02911        78 --------------------------------------------------------------------------------   77 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccC
Q 003191          465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP  544 (840)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~VeGP  544 (840)
                                                                                          +|+  ++.|+||
T Consensus        78 --------------------------------------------------------------------~Gd--~v~i~gP   87 (261)
T TIGR02911        78 --------------------------------------------------------------------EGD--NLFLRGP   87 (261)
T ss_pred             --------------------------------------------------------------------CCC--EEEEecC
Confidence                                                                                012  5789999


Q ss_pred             cCC-CCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCC
Q 003191          545 YGH-EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL  623 (840)
Q Consensus       545 YG~-~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~  623 (840)
                      ||. +..+....++++|||||+||||+++++++++++.+     ..++|+|+|++|+.+++.+ .++++++.     ...
T Consensus        88 ~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~-----~~~~v~L~~~~r~~~~~~~-~~eL~~l~-----~~~  156 (261)
T TIGR02911        88 YGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK-----EIKSLNLILGFKTPDDILF-KEDIAEWK-----GNI  156 (261)
T ss_pred             CCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc-----cCceEEEEEecCCHHHhhH-HHHHHHHH-----hcC
Confidence            998 43222356799999999999999999999876531     1358999999999999854 44455553     112


Q ss_pred             ceEEEEEEeCCCCCC-CcccccccccccccCCCCCCCceeEEecCCch
Q 003191          624 NLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  670 (840)
Q Consensus       624 ~l~I~iyVTr~~~~~-~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~  670 (840)
                        +++..+.++.+.. ...+.+.+. +........+...+++|||...
T Consensus       157 --~~~~~~~~~~~~~~~~~g~v~~~-l~~~~~~~~~~~~v~lCGp~~m  201 (261)
T TIGR02911       157 --NLTLTLDEAEEDYKGNIGLVTKY-IPELTLKDIEEVQAIVVGPPIM  201 (261)
T ss_pred             --cEEEEEcCCCCCCcCCeeccCHh-HHhccCCCccceEEEEECCHHH
Confidence              3343444332211 222333322 1111111122356899999773

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=99.74  E-value=1.3e-16  Score=180.88  Aligned_cols=87  Identities=16%  Similarity=0.312  Sum_probs=61.5

Q ss_pred             eeeeccCcCCCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccC
Q 003191          538 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC  616 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~  616 (840)
                      +|.|.||||...... ....+++|||||+||||++++++++.+....+   ..++++|+|++|+.+++.+++++ +++. 
T Consensus       249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~---~~~~v~L~~G~Rt~~dl~y~~eL-~~l~-  323 (411)
T TIGR03224       249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG---EGGKLMLFFGARTKEELPYFGPL-QKLP-  323 (411)
T ss_pred             EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC---CCCCEEEEEecCccccchHHHHH-HHHH-
Confidence            688999999854321 22468999999999999999999987643111   24589999999999999765554 4442 


Q ss_pred             CCCCCCCceEEEEEEeCC
Q 003191          617 PFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~  634 (840)
                           ...+++++.++++
T Consensus       324 -----~~~~~~~~~~sr~  336 (411)
T TIGR03224       324 -----KDFIDINFAFSRT  336 (411)
T ss_pred             -----hcCceEEEEeccC
Confidence                 1224555555553

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>PLN02252 nitrate reductase [NADPH]

Probab=99.73  E-value=6.9e-17  Score=197.26  Aligned_cols=208  Identities=19%  Similarity=0.256  Sum_probs=148.8

Q ss_pred             ccceEEEEEEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec-------
Q 003191          303 RRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL-------  372 (840)
Q Consensus       303 ~~~~~vasv~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~-------  372 (840)
                      +..+++.+++.++.++.++++..+..   +.+.||||++|+++.-+....||||++|.+++ .+.++|+||..       
T Consensus       634 ~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~  712 (888)
T PLN02252        634 KIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPK  712 (888)
T ss_pred             eEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCc
Confidence            35678889999999999998886543   57899999999997444456799999999864 57899999986       


Q ss_pred             ----CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCC
Q 003191          373 ----GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQ  448 (840)
Q Consensus       373 ----Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (840)
                          |.+|+.|.+                                                                   
T Consensus       713 ~p~gG~~S~~L~~-------------------------------------------------------------------  725 (888)
T PLN02252        713 FPNGGLMSQYLDS-------------------------------------------------------------------  725 (888)
T ss_pred             cCCCCchhhHHhc-------------------------------------------------------------------
Confidence                444444411                                                                   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          449 GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSR  528 (840)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  528 (840)
                                                                                                      
T Consensus       726 --------------------------------------------------------------------------------  725 (888)
T PLN02252        726 --------------------------------------------------------------------------------  725 (888)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCceeeeeccCcCCCCcC----------ccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEee
Q 003191          529 HPLLPPTKITASVEGPYGHEVPY----------HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV  598 (840)
Q Consensus       529 ~~~~pg~~~~V~VeGPYG~~~~~----------~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWav  598 (840)
                        +.+|.  +|.|.||+|.+...          ....++++|||||+||||+++++++++++.++     .++|.|+|++
T Consensus       726 --L~vGd--~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d-----~t~i~Liyg~  796 (888)
T PLN02252        726 --LPIGD--TIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPED-----KTEMSLVYAN  796 (888)
T ss_pred             --CCCCC--EEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccCC-----CCcEEEEEEE
Confidence              11224  57899999985321          12357999999999999999999999875322     3479999999


Q ss_pred             cCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC--CCCCcccccccccccccCCCCCCCceeEEecCCchh
Q 003191          599 KKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET--EPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV  671 (840)
Q Consensus       599 R~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~--~~~~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~~  671 (840)
                      |+.+|+. +.++++++.   .....++++...+|++.  ......+.+++.++....+...+...+++|||...+
T Consensus       797 Rt~~Dil-~~eEL~~la---~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vyiCGPp~Mi  867 (888)
T PLN02252        797 RTEDDIL-LREELDRWA---AEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLALMCGPPPMI  867 (888)
T ss_pred             CCHHHhh-HHHHHHHHH---HhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEEEeCCHHHH
Confidence            9999985 455566654   12235788888888753  222234556665555555554556788999997743

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.73  E-value=7.1e-17  Score=173.41  Aligned_cols=205  Identities=19%  Similarity=0.240  Sum_probs=165.8

Q ss_pred             cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  378 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk  378 (840)
                      ..+++.+.+.++.|+-+.++..+.   .+....|||+++.+|..+..-.+|+|-.|++.+ .+.+.|+||.+  |-+|+.
T Consensus        52 ~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y~~G~mS~~  130 (286)
T KOG0534|consen   52 YPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVYPKGKMSQH  130 (286)
T ss_pred             EEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEeccCCcccHH
Confidence            456778888899998777777652   466789999999999777777899999998865 68999999997  777777


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  458 (840)
Q Consensus       379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (840)
                      |.++                                                                            
T Consensus       131 l~~L----------------------------------------------------------------------------  134 (286)
T KOG0534|consen  131 LDSL----------------------------------------------------------------------------  134 (286)
T ss_pred             HhcC----------------------------------------------------------------------------
Confidence            6322                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191          459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  538 (840)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~  538 (840)
                                                                                               .+|+  +
T Consensus       135 -------------------------------------------------------------------------kiGd--~  139 (286)
T KOG0534|consen  135 -------------------------------------------------------------------------KIGD--T  139 (286)
T ss_pred             -------------------------------------------------------------------------CCCC--E
Confidence                                                                                     0113  6


Q ss_pred             eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCC
Q 003191          539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF  618 (840)
Q Consensus       539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~  618 (840)
                      |.+.||.|....+...++++.|||||+||||+++++++++.+.++     ..+|+|++++++.+|+ +++++++++..  
T Consensus       140 ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d-----~tki~lly~N~te~DI-Llr~eL~~la~--  211 (286)
T KOG0534|consen  140 VEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPED-----TTKISLLYANKTEDDI-LLREELEELAS--  211 (286)
T ss_pred             EEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCC-----CcEEEEEEecCCcccc-chHHHHHHHHh--
Confidence            889999999765555689999999999999999999999988754     3489999999999998 67888877752  


Q ss_pred             CCCCCceEEEEEEeCCCCCC-CcccccccccccccCCCCCC-CceeEEecCCc
Q 003191          619 FSDKLNLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSG-CAMSVLVGTGN  669 (840)
Q Consensus       619 ~~~~~~l~I~iyVTr~~~~~-~~~~~i~~~~~~~f~P~~sd-~~i~~v~Gp~~  669 (840)
                       ....+++++.+++++.+.+ ...+.++++++..+.|.+.+ +....+|||..
T Consensus       212 -~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~  263 (286)
T KOG0534|consen  212 -KYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPP  263 (286)
T ss_pred             -hCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHH
Confidence             2344899999999988443 46788999999899888888 68889999976

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=99.72  E-value=4.4e-16  Score=168.87  Aligned_cols=74  Identities=11%  Similarity=0.014  Sum_probs=57.3

Q ss_pred             cceEEEEEEEec----CceEEEEEeCCC-------CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEe-
Q 003191          304 RTVDVLSASCLP----CGTVELVLSKPA-------NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV-  371 (840)
Q Consensus       304 ~~~~vasv~~Lp----~~vvrLtI~~p~-------~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~-  371 (840)
                      ...++++.+.+.    .++.++++..+.       ...|.||||+.|..++  ....|||||+|.+.  ++.++|+||. 
T Consensus        46 ~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g--~~~~R~YSias~p~--~g~l~l~Vk~~  121 (289)
T cd06201          46 KALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPG--SDVPRFYSLASSSS--DGFLEICVRKH  121 (289)
T ss_pred             cceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCC--CCCCceEecCCCCC--CCeEEEEEEeC
Confidence            456788888777    588888888665       4679999999998653  23469999999984  3789999997 


Q ss_pred             -cCchhHHHHH
Q 003191          372 -LGEWTENLRD  381 (840)
Q Consensus       372 -~Gg~TkkL~~  381 (840)
                       .|..|+.|++
T Consensus       122 ~~G~~S~~L~~  132 (289)
T cd06201         122 PGGLCSGYLHG  132 (289)
T ss_pred             CCccchhhHhh
Confidence             4777887753

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.68  E-value=2e-15  Score=183.25  Aligned_cols=142  Identities=18%  Similarity=0.286  Sum_probs=113.8

Q ss_pred             eEEEEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHHHh
Q 003191          306 VDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL  384 (840)
Q Consensus       306 ~~vasv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~l~  384 (840)
                      +++.+.+.+.+++.++++..+. ...++||||+.|+++..+  +.|||||+|.+.+ ++.++|+||..|..|+.|.+. .
T Consensus         2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~-~g~i~~~vk~vG~~T~~L~~l-~   77 (752)
T PRK12778          2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPE-KGTITLVIQEVGLSTTKLCEL-N   77 (752)
T ss_pred             CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCC-CCEEEEEEEEcCchHHHHhcC-C
Confidence            3577888899999999998664 247899999999997432  4689999998754 578999999999999988631 0


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP  464 (840)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (840)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (752)
T PRK12778         78 --------------------------------------------------------------------------------   77 (752)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee-eecc
Q 003191          465 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEG  543 (840)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V-~VeG  543 (840)
                                                                                          ||+  ++ .|.|
T Consensus        78 --------------------------------------------------------------------~Gd--~v~~v~G   87 (752)
T PRK12778         78 --------------------------------------------------------------------EGD--YITDVVG   87 (752)
T ss_pred             --------------------------------------------------------------------CCC--EeCeEeC
Confidence                                                                                012  47 6999


Q ss_pred             CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHH
Q 003191          544 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  610 (840)
Q Consensus       544 PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~  610 (840)
                      |||.+... ...++++|||||+||||++++++++.++.        .+++++|+.|+.+++.+.+++
T Consensus        88 P~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~~l~~~~el  145 (752)
T PRK12778         88 PLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAG--------NRVITILGGRSKELIILEDEM  145 (752)
T ss_pred             CCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCC--------CeEEEEeccCCHHHhhhHHHH
Confidence            99998653 44579999999999999999999997642        379999999999998655443

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.65  E-value=5.9e-15  Score=182.24  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=59.1

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL  379 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL  379 (840)
                      ...++.+++.+.+++.++++..+.. ..++||||+.|+++..+  +.+||||++.+.+ ++.++|+||..|..|+.|
T Consensus       649 ~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~-~g~i~l~Vk~vG~~T~~L  722 (944)
T PRK12779        649 IPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAE-KGTIDLVVQGMGTSSLEI  722 (944)
T ss_pred             eEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCC-CCEEEEEEEeeccHHHHH
Confidence            4567888889999999999987643 46899999999985333  4699999998753 578999999999888766

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=99.62  E-value=2.9e-14  Score=149.87  Aligned_cols=57  Identities=18%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchH
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL  604 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl  604 (840)
                      ++.+.||+|.+... ...++++|||||+||||++++++++..+         .++++++++|+.+|+
T Consensus       104 ~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~il~~~~~~---------~~~~~~~~~~~~~d~  160 (235)
T cd06193         104 TLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAAILEELPAD---------ARGTALIEVPDAADE  160 (235)
T ss_pred             EEEEECCCCCCCCC-CCcceEEEEeccchHHHHHHHHHhCCCC---------CeEEEEEEECCHHHc
Confidence            68899999998654 3567999999999999999999987431         379999999998655

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.61  E-value=3e-14  Score=177.20  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             EEEEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecCchhHHHHHH
Q 003191          307 DVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDY  382 (840)
Q Consensus       307 ~vasv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL~~~  382 (840)
                      ++.+.+.+..++..+++..|. ...++||||+.|+++..  -+.+||||++.+.+ ++.++|.+|..|..|+.|++.
T Consensus         3 ~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~--~errplSIa~~~~~-~g~i~l~vk~vG~~T~~L~~~   76 (1006)
T PRK12775          3 SIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEG--AERIPLTVADFDRK-KGTITMVVQALGKTTREMMTK   76 (1006)
T ss_pred             EEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCC--CeeEEEEecCcCCC-CCEEEEEEEecCcHHHHHHhc
Confidence            567778888999999998765 35789999999998643  24689999987743 578999999999999998654

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.57  E-value=5e-14  Score=177.99  Aligned_cols=126  Identities=17%  Similarity=0.225  Sum_probs=84.4

Q ss_pred             eeeeccCcCCC----------CcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHH
Q 003191          538 TASVEGPYGHE----------VPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLL  607 (840)
Q Consensus       538 ~V~VeGPYG~~----------~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl  607 (840)
                      +|.|.||+|..          ..+....++++|||||+||||+++++++++++.+.+   ..++|+|+|++|+.+++.+ 
T Consensus      1004 ~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~---~~~~i~Llyg~r~~~dl~~- 1079 (1167)
T PTZ00306       1004 SVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVD---SIESIRLIYAAEDVSELTY- 1079 (1167)
T ss_pred             EEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccC---CCceEEEEEEeCCHHHhhH-
Confidence            46677887731          111134578999999999999999999998653111   1358999999999999965 


Q ss_pred             HHHHHHccCCCCCCCCceEEEEEEeCCCCCC-CcccccccccccccCCCCCCCceeEEecCCch
Q 003191          608 SNFYKESICPFFSDKLNLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  670 (840)
Q Consensus       608 ~~~l~el~~~~~~~~~~l~I~iyVTr~~~~~-~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~  670 (840)
                      .++++++.   .....+++++..++++.+.. ...+.+++.++.++.+.+......++|||...
T Consensus      1080 ~~eL~~l~---~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCGP~~m 1140 (1167)
T PTZ00306       1080 RELLESYR---KENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGPPVM 1140 (1167)
T ss_pred             HHHHHHHH---HHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeCCHHH
Confidence            44555553   11234688888888754322 22355555555566665555667899999763

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=99.35  E-value=1.3e-11  Score=139.21  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=67.3

Q ss_pred             CCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHH
Q 003191          534 PTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYK  612 (840)
Q Consensus       534 g~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~  612 (840)
                      |+.+.+.+.||+|.+.......++++|||||+||||+++++++.....+.+.  ...++.|+|++|+. +|+. +.++++
T Consensus       209 Gd~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~--~~~~v~L~~G~R~~~~d~l-y~~el~  285 (384)
T cd06206         209 GDSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGR--KLAPALLFFGCRHPDHDDL-YRDELE  285 (384)
T ss_pred             CCeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCC--CcCCEEEEEeCCCCCcccc-hHHHHH
Confidence            3566787899999875433456789999999999999999999865421111  23579999999999 6664 455555


Q ss_pred             HccCCCCCCCCceEEEEEEeCCC
Q 003191          613 ESICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       613 el~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      ++.     +..++++...+++++
T Consensus       286 ~~~-----~~~~~~l~~a~Sr~~  303 (384)
T cd06206         286 EWE-----AAGVVSVRRAYSRPP  303 (384)
T ss_pred             HHH-----HCCCeEEEEEecccC
Confidence            553     134577777777753

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.33  E-value=1.8e-11  Score=138.00  Aligned_cols=91  Identities=16%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHccC
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC  616 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~~  616 (840)
                      ++.|.||+|.+........+++|||||+||||+++++++.....+.+  ....++.|+|++|+. +|+ .+.++++++. 
T Consensus       213 ~v~v~~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~--~~~~~~~L~~G~R~~~~d~-~y~~el~~~~-  288 (382)
T cd06207         213 RVTVFIKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQG--PEIGPVLLYFGCRHEDKDY-LYKEELEEYE-  288 (382)
T ss_pred             EEEEEEECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcC--ccCCCEEEEECCCCCCccc-cHHHHHHHHH-
Confidence            57788999986543233568999999999999999999976542111  124689999999998 666 4555555553 


Q ss_pred             CCCCCCCceEEEEEEeCCC
Q 003191          617 PFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~~  635 (840)
                         .+...+++++..+|++
T Consensus       289 ---~~~~~~~~~~a~Srd~  304 (382)
T cd06207         289 ---KSGVLTTLGTAFSRDQ  304 (382)
T ss_pred             ---hCCCCceEEEEecCCC
Confidence               1334467777777643

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=99.29  E-value=2.1e-11  Score=136.53  Aligned_cols=87  Identities=17%  Similarity=0.140  Sum_probs=59.6

Q ss_pred             eeeeccCcC-CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHcc
Q 003191          538 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  615 (840)
Q Consensus       538 ~V~VeGPYG-~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~  615 (840)
                      +|.+.||.| .+........+++|||||+||||+++++++.+...      ...++.|+|++|+. +|+ .+.++++++.
T Consensus       195 ~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~------~~~~~~L~~G~R~~~~D~-~y~~el~~~~  267 (360)
T cd06199         195 TVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG------AKGKNWLFFGERHFATDF-LYQDELQQWL  267 (360)
T ss_pred             EEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc------CCCcEEEEEcCCCCccch-hHHHHHHHHH
Confidence            466666554 45432233579999999999999999999887543      13478999999997 566 4556565553


Q ss_pred             CCCCCCCCceEEEEEEeCCC
Q 003191          616 CPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~~  635 (840)
                          .....++++..++|+.
T Consensus       268 ----~~~~~~~~~~a~Sr~~  283 (360)
T cd06199         268 ----KDGVLTRLDTAFSRDQ  283 (360)
T ss_pred             ----HcCCCeEEEEEEccCC
Confidence                1334566777777753

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=99.26  E-value=4.2e-11  Score=142.17  Aligned_cols=86  Identities=10%  Similarity=0.109  Sum_probs=56.0

Q ss_pred             eeeeccCcC-CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecC-cchHHHHHHHHHHcc
Q 003191          538 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESI  615 (840)
Q Consensus       538 ~V~VeGPYG-~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~-~~dl~wl~~~l~el~  615 (840)
                      +|.|.||.| .+....+...+++|||||+||||+++++++...+..      ..++.|+|++|+ .+|+. +.+++++..
T Consensus       432 ~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~------~g~~~LffG~R~~~~D~l-y~~El~~~~  504 (597)
T TIGR01931       432 TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA------KGKNWLFFGNPHFTTDFL-YQVEWQNYL  504 (597)
T ss_pred             EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC------CCCEEEEECCCCCCcchh-HHHHHHHHH
Confidence            355666554 453322344689999999999999999998876531      347999999999 56764 445554443


Q ss_pred             CCCCCCCCceEEEEEEeCC
Q 003191          616 CPFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~  634 (840)
                          .+....+++...+|+
T Consensus       505 ----~~~~l~~l~~afSRd  519 (597)
T TIGR01931       505 ----KKGVLTKMDLAFSRD  519 (597)
T ss_pred             ----HcCCCceeEEEEecC
Confidence                122223455556663

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=99.24  E-value=2.2e-10  Score=129.99  Aligned_cols=94  Identities=11%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             eeeecc-CcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHc
Q 003191          538 TASVEG-PYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES  614 (840)
Q Consensus       538 ~V~VeG-PYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el  614 (840)
                      ++.+.| |.|.+..... ...+++|||||+||||+.+++++.....+.+......++.|+|++|+. +|+. +.++++++
T Consensus       222 ~v~i~~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~-y~~El~~~  300 (398)
T cd06203         222 KVPFYLRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYL-FRDELEEF  300 (398)
T ss_pred             EEEEEEecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchh-HHHHHHHH
Confidence            466667 5666543222 357899999999999999999987653211111124579999999998 5664 45555555


Q ss_pred             cCCCCCCCCceEEEEEEeCCCC
Q 003191          615 ICPFFSDKLNLETFIYVTRETE  636 (840)
Q Consensus       615 ~~~~~~~~~~l~I~iyVTr~~~  636 (840)
                      .    .+....++.+.++|+++
T Consensus       301 ~----~~~~~~~~~~a~SRd~~  318 (398)
T cd06203         301 L----EEGILTRLIVAFSRDEN  318 (398)
T ss_pred             H----HcCCCceEEEEECCCCC
Confidence            3    12334467777777543

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.23  E-value=8.6e-11  Score=124.20  Aligned_cols=98  Identities=15%  Similarity=0.351  Sum_probs=79.7

Q ss_pred             CCCCCCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHH
Q 003191          527 SRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSL  606 (840)
Q Consensus       527 ~~~~~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~w  606 (840)
                      .-++|.||+  +|.|.||||.+.-. +....+|||.||.|.+|+-|.+-|.+.+.+.     .|++.|-++.|+..+. +
T Consensus       250 yi~sLKpGD--KvtisGPfGEfFaK-dtdaemvFigGGAGmapmRSHIfDqL~rlhS-----kRkis~WYGARS~rE~-f  320 (410)
T COG2871         250 YIWSLKPGD--KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLHS-----KRKISFWYGARSLREM-F  320 (410)
T ss_pred             eEEeecCCC--eEEEeccchhhhhc-cCCCceEEEecCcCcCchHHHHHHHHHhhcc-----cceeeeeeccchHHHh-H
Confidence            567788999  68899999997654 5667899999999999999999999987643     4699999999999887 4


Q ss_pred             HHHHHHHccCCCCCCCCceEEEEEEeCCCCC
Q 003191          607 LSNFYKESICPFFSDKLNLETFIYVTRETEP  637 (840)
Q Consensus       607 l~~~l~el~~~~~~~~~~l~I~iyVTr~~~~  637 (840)
                      +.+..+++.    .+..+++-|+.++.+..+
T Consensus       321 Y~Ed~d~L~----ae~pNF~wH~aLSdplpE  347 (410)
T COG2871         321 YQEDFDQLQ----AENPNFHWHLALSDPLPE  347 (410)
T ss_pred             HHHHHHHHH----hhCCCcEEEEEecCCCCc
Confidence            556666664    467889999998876543

>PRK06214 sulfite reductase; Provisional

Probab=99.11  E-value=5.4e-10  Score=130.50  Aligned_cols=91  Identities=18%  Similarity=0.213  Sum_probs=63.0

Q ss_pred             CCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcc-hHHHHHHHHH
Q 003191          534 PTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYK  612 (840)
Q Consensus       534 g~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~-dl~wl~~~l~  612 (840)
                      |+.+++.+.+|+| +....+....+||||||+||||+++++++.+...      ...++.|+|++|+.+ |+ .+.++++
T Consensus       363 Gd~V~v~i~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~------~~g~~~LffG~R~~~~D~-ly~dEL~  434 (530)
T PRK06214        363 GTRVRVYVQKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATK------APGRNWLFFGHQRSATDF-FYEDELN  434 (530)
T ss_pred             CCEEEEEecCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc------CCCCeEEEEEecCChhhh-HHHHHHH
Confidence            4667788888888 5432234468999999999999999999876542      134689999997654 55 4566666


Q ss_pred             HccCCCCCCCCceEEEEEEeCCCC
Q 003191          613 ESICPFFSDKLNLETFIYVTRETE  636 (840)
Q Consensus       613 el~~~~~~~~~~l~I~iyVTr~~~  636 (840)
                      ++.    ......++++..+|+..
T Consensus       435 ~l~----~~g~l~~l~~afSRd~~  454 (530)
T PRK06214        435 GLK----AAGVLTRLSLAWSRDGE  454 (530)
T ss_pred             HHH----HhCCceEEEEEEecCCC
Confidence            653    12334457777887653

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=99.09  E-value=1.9e-10  Score=105.61  Aligned_cols=48  Identities=31%  Similarity=0.618  Sum_probs=39.5

Q ss_pred             EEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191          560 LVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  614 (840)
Q Consensus       560 LIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el  614 (840)
                      |||||+||||+++++++++.+. .     .++|+|+|++|+.+++.+. ++++++
T Consensus         1 lIagGtGIaP~~s~l~~~~~~~-~-----~~~v~l~~~~r~~~~~~~~-~~l~~~   48 (109)
T PF00175_consen    1 LIAGGTGIAPFLSMLRYLLERN-D-----NRKVTLFYGARTPEDLLFR-DELEAL   48 (109)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHHT-C-----TSEEEEEEEESSGGGSTTH-HHHHHH
T ss_pred             CeecceeHHHHHHHHHHHHHhC-C-----CCCEEEEEEEcccccccch-hHHHHH
Confidence            7999999999999999999873 2     4589999999999998544 444444

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.09  E-value=1.6e-09  Score=123.59  Aligned_cols=90  Identities=16%  Similarity=0.151  Sum_probs=60.7

Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHccC
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC  616 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~~  616 (840)
                      ++.+.+|.|.+........+++|||||+||||+++++++.....+.+.  ...++.|+|++|+. +|+. +.++++++. 
T Consensus       248 ~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~--~~~~v~L~~G~R~~~~d~l-y~~el~~~~-  323 (416)
T cd06204         248 KVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGK--KVGPTLLFFGCRHPDEDFI-YKDELEEYA-  323 (416)
T ss_pred             eEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccC--ccCCEEEEEcCCCCCcccc-hHHHHHHHH-
Confidence            344556778764332345799999999999999999998764321111  23579999999998 5664 455555553 


Q ss_pred             CCCCCCCceEEEEEEeCC
Q 003191          617 PFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~  634 (840)
                         ....+++++..++|+
T Consensus       324 ---~~~~~~~l~~a~Sr~  338 (416)
T cd06204         324 ---KLGGLLELVTAFSRE  338 (416)
T ss_pred             ---HcCCceEEEEEECcC
Confidence               123456777777764

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=99.01  E-value=5.1e-09  Score=119.20  Aligned_cols=78  Identities=17%  Similarity=0.220  Sum_probs=52.9

Q ss_pred             cCCceEEEEEcCCCchhhHHHHHHHHHhhc--cCCCCCCceEEEEEeecCc-chHHHHHHHHHHccCCCCCCCCceEEEE
Q 003191          553 LMYENLILVAGGIGISPFLAILSDILHRIN--EGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESICPFFSDKLNLETFI  629 (840)
Q Consensus       553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~--~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~~~~~~~~~~l~I~i  629 (840)
                      ....+++|||||+||||+.+++++.....+  ........++.|++++|+. +|. .+.++++++.    ......+++.
T Consensus       244 ~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~-ly~~El~~~~----~~~~~~~~~~  318 (406)
T cd06202         244 DPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDD-IYKEETEEAK----NKGVLTEVYT  318 (406)
T ss_pred             CCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCccc-chHHHHHHHH----HcCCCceEEE
Confidence            345789999999999999999998654321  0011124689999999999 555 3466666653    2334456777


Q ss_pred             EEeCCC
Q 003191          630 YVTRET  635 (840)
Q Consensus       630 yVTr~~  635 (840)
                      .++|++
T Consensus       319 a~SR~~  324 (406)
T cd06202         319 ALSREP  324 (406)
T ss_pred             EEcCCC
Confidence            788753

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=98.83  E-value=7.9e-09  Score=122.82  Aligned_cols=88  Identities=14%  Similarity=0.110  Sum_probs=60.3

Q ss_pred             eeeeccCcCC-CCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHcc
Q 003191          538 TASVEGPYGH-EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  615 (840)
Q Consensus       538 ~V~VeGPYG~-~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~  615 (840)
                      ++.|.||.|+ +....+...+++|||+|+||||+.+++++...+.      ...++.|+|++|+. +|. .++++++++.
T Consensus       435 ~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------~~~~~~LffG~R~~~~D~-lY~~El~~~~  507 (600)
T PRK10953        435 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG------APGKNWLFFGNPHFTEDF-LYQVEWQRYV  507 (600)
T ss_pred             EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC------CCCCeEEEeeccCCccch-hHHHHHHHHH
Confidence            4667777764 4332234578999999999999999999886543      13479999999994 454 5666666654


Q ss_pred             CCCCCCCCceEEEEEEeCCCC
Q 003191          616 CPFFSDKLNLETFIYVTRETE  636 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~~~  636 (840)
                      .    +...-+++...+|++.
T Consensus       508 ~----~g~l~~l~~afSRd~~  524 (600)
T PRK10953        508 K----EGLLTRIDLAWSRDQK  524 (600)
T ss_pred             H----cCCcceEEEEECCCCC
Confidence            1    1222246677777653

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=98.73  E-value=5.8e-08  Score=88.37  Aligned_cols=75  Identities=21%  Similarity=0.194  Sum_probs=60.5

Q ss_pred             eEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191          306 VDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  380 (840)
Q Consensus       306 ~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~  380 (840)
                      +++.+++.+.+++.++++..+.   ...+.||||+.|+++.-+...++|||++|.+++ ++.++|+||..  |..|+.|.
T Consensus         2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~~~G~~S~~L~   80 (99)
T PF00970_consen    2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRYPNGRVSRYLH   80 (99)
T ss_dssp             EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEECTTSHHHHHHH
T ss_pred             EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEeccCCHHHHHHH
Confidence            5788899999999888887552   357999999999999445567899999999864 57999999998  88899884


Q ss_pred             H
Q 003191          381 D  381 (840)
Q Consensus       381 ~  381 (840)
                      +
T Consensus        81 ~   81 (99)
T PF00970_consen   81 Q   81 (99)
T ss_dssp             T
T ss_pred             h
Confidence            3

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.68  E-value=1.7e-07  Score=115.14  Aligned_cols=77  Identities=23%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCC-cccCCCcEEEEEEcCCC--CC-ceeceEeeeCCCCCCCeEEEEEEecCchhHHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELS--WL-QWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL  379 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~-~~~~PGQhvfL~vP~is--~~-q~HPFTIaSsp~~~~~~Lsf~IK~~Gg~TkkL  379 (840)
                      ...++.+.+.+.+++.++++..|.. -.++||||+.|+.++.+  .+ +..||||++.+.+ ++.++|++|..|..|+.|
T Consensus       791 l~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvVGkgT~~L  869 (1028)
T PRK06567        791 LTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEVGKSTSLC  869 (1028)
T ss_pred             hceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEEChHHHHH
Confidence            3457888899999999999987653 35889999999986422  22 4468999998754 578999999999999988


Q ss_pred             HH
Q 003191          380 RD  381 (840)
Q Consensus       380 ~~  381 (840)
                      .+
T Consensus       870 s~  871 (1028)
T PRK06567        870 KT  871 (1028)
T ss_pred             hc
Confidence            54

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.60  E-value=9.2e-08  Score=111.64  Aligned_cols=22  Identities=45%  Similarity=0.972  Sum_probs=10.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q 003191          452 PPGPPLQEEGPPPQGPHPPVPP  473 (840)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~  473 (840)
                      ||+||+.+.|++||+|+||+|+
T Consensus       544 pPppPPlpggag~PPPPpplPg  565 (1102)
T KOG1924|consen  544 PPPPPPLPGGAGPPPPPPPLPG  565 (1102)
T ss_pred             CCCCCCCCCCCCCCccCCCCCc
Confidence            3334444444444444444443

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.34  E-value=1.4e-06  Score=101.96  Aligned_cols=7  Identities=29%  Similarity=0.264  Sum_probs=3.6

Q ss_pred             eccCcCC
Q 003191          541 VEGPYGH  547 (840)
Q Consensus       541 VeGPYG~  547 (840)
                      +|+|.-.
T Consensus       622 ~e~~Mrr  628 (1102)
T KOG1924|consen  622 PEVPMRR  628 (1102)
T ss_pred             CCCcccc
Confidence            4555544

>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana

Probab=98.28  E-value=1.8e-06  Score=81.16  Aligned_cols=44  Identities=32%  Similarity=0.612  Sum_probs=39.0

Q ss_pred             cccchHHHHHHHHHHHHHhchhhhh-hccchhHHHhhhhHHHHHH
Q 003191          227 IANFPGVISLLAGLMMWATSFHPVR-KHFFQLFFYTHQLYVVFVV  270 (840)
Q Consensus       227 ~~~~~GvvAlv~l~lL~vtSl~~iR-r~~YElF~~~H~L~ivflv  270 (840)
                      ..+.+|+++++++++|+++|++++| |+.||.|+++|++++++++
T Consensus        78 ~~~~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~~H~~~~~~~~  122 (125)
T PF01794_consen   78 PYNLTGIIALLLLLILAVTSFPWIRRRRNYEIFYYLHILFYIAFL  122 (125)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            3458999999999999999999999 8899999999999864443

This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=98.01  E-value=8.4e-05  Score=88.58  Aligned_cols=78  Identities=19%  Similarity=0.260  Sum_probs=58.6

Q ss_pred             cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191          553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  632 (840)
Q Consensus       553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT  632 (840)
                      +.-.+++|||-|+||+||.+++++.....+++...... +.|++++|++++...+++++++..    ......++..-++
T Consensus       489 dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~----~~~~l~~l~~A~S  563 (645)
T KOG1158|consen  489 DPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYK----KAGILTRLDVAFS  563 (645)
T ss_pred             CCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHH----hcCcchhheeeee
Confidence            34568999999999999999999988776544322233 899999999999888888887642    2334455666777


Q ss_pred             CCC
Q 003191          633 RET  635 (840)
Q Consensus       633 r~~  635 (840)
                      |+.
T Consensus       564 Req  566 (645)
T KOG1158|consen  564 REQ  566 (645)
T ss_pred             ccC
Confidence            765

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=97.90  E-value=0.00031  Score=83.59  Aligned_cols=72  Identities=19%  Similarity=0.291  Sum_probs=54.4

Q ss_pred             CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCC
Q 003191          555 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       555 yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~  634 (840)
                      ...++||+-|+||+||.+++++-..+...      .++.|++++|+.++-.++++++++..    ......++....+|+
T Consensus       440 ~~PiIMIG~GTGIAPFRafvq~r~~~~~~------gk~wLfFG~R~~~~DfLY~~Ewe~~~----~~G~~~~l~~AfSRd  509 (587)
T COG0369         440 ETPIIMIGPGTGIAPFRAFVQERAANGAE------GKNWLFFGCRHFTEDFLYQEEWEEYL----KDGVLTRLDLAFSRD  509 (587)
T ss_pred             CCceEEEcCCCCchhHHHHHHHHHhcccc------CceEEEecCCCCccchhhHHHHHHHH----hcCCceeEEEEEeec
Confidence            38899999999999999999998766422      27999999999655556777776532    233457788888887


Q ss_pred             CC
Q 003191          635 TE  636 (840)
Q Consensus       635 ~~  636 (840)
                      ++
T Consensus       510 q~  511 (587)
T COG0369         510 QE  511 (587)
T ss_pred             CC
Confidence            64

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=97.36  E-value=0.00088  Score=71.61  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=42.8

Q ss_pred             ccceEEEEEEEecCceEEEEEeCC-C---CcccCCCcEEEEEEc--CCCCCceeceEeeeCCCCCCCeEEEEEEec
Q 003191          303 RRTVDVLSASCLPCGTVELVLSKP-A---NLRYNALSFFFLQVR--ELSWLQWHPFSVSSSPLEGKYHSSVLIKVL  372 (840)
Q Consensus       303 ~~~~~vasv~~Lp~~vvrLtI~~p-~---~~~~~PGQhvfL~vP--~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~  372 (840)
                      ...+.+...+..++|+.++++... .   .....||||+-+.--  +.+.-.-+=++.+...+...+.++|.+|..
T Consensus       149 ~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~  224 (385)
T KOG3378|consen  149 EVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV  224 (385)
T ss_pred             ccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh
Confidence            356778888888899999988632 2   235789999988642  222111111222222222357899999887

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=94.69  E-value=0.087  Score=63.37  Aligned_cols=7  Identities=43%  Similarity=0.468  Sum_probs=3.3

Q ss_pred             ccCCCCC
Q 003191          501 SETEPQV  507 (840)
Q Consensus       501 ~~~~~~~  507 (840)
                      +.++||.
T Consensus       324 s~~~p~p  330 (830)
T KOG1923|consen  324 SSGAPQP  330 (830)
T ss_pred             cCCCCCC
Confidence            4444543

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=93.13  E-value=0.27  Score=59.34  Aligned_cols=7  Identities=29%  Similarity=0.515  Sum_probs=3.4

Q ss_pred             eeeeccC
Q 003191          538 TASVEGP  544 (840)
Q Consensus       538 ~V~VeGP  544 (840)
                      +..+.|+
T Consensus       381 P~qv~~t  387 (830)
T KOG1923|consen  381 PIQVKGT  387 (830)
T ss_pred             ccccccc
Confidence            3445553

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=93.11  E-value=0.13  Score=67.12  Aligned_cols=7  Identities=0%  Similarity=-0.106  Sum_probs=3.2

Q ss_pred             cccchhh
Q 003191          417 RNLMYEN  423 (840)
Q Consensus       417 ~~~~~~~  423 (840)
                      .||..+.
T Consensus      1660 nWYLrS~ 1666 (2039)
T PRK15319       1660 DWYLASK 1666 (2039)
T ss_pred             CceEeeC
Confidence            3554444

>PHA03247 large tegument protein UL36; Provisional

Probab=88.12  E-value=2.9  Score=56.83  Aligned_cols=6  Identities=33%  Similarity=0.955  Sum_probs=2.5

Q ss_pred             ccCCCC
Q 003191          776 LYGSRP  781 (840)
Q Consensus       776 hyggRP  781 (840)
                      +||-||
T Consensus      3086 ~~~~~~ 3091 (3151)
T PHA03247       3086 QFGPPP 3091 (3151)
T ss_pred             ccCCCC
Confidence            444444

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=88.12  E-value=2.5  Score=49.22  Aligned_cols=18  Identities=11%  Similarity=0.322  Sum_probs=12.1

Q ss_pred             EEEcCCCCCceeceEeee
Q 003191          339 LQVRELSWLQWHPFSVSS  356 (840)
Q Consensus       339 L~vP~is~~q~HPFTIaS  356 (840)
                      -+++.+++-|.|+|..+-
T Consensus       243 ~h~~hVgwd~~~gf~~~~  260 (569)
T KOG3671|consen  243 PHIPHVGWDEQVGFDSAP  260 (569)
T ss_pred             ccccccCCCcCCCcccCC
Confidence            345566666888988754

>COG2717 Predicted membrane protein [Function unknown]

Probab=87.79  E-value=0.89  Score=47.83  Aligned_cols=72  Identities=21%  Similarity=0.120  Sum_probs=54.9

Q ss_pred             chHHHHHHHHHHHHHhchhhhhhccchhHHHhhhhHHHHHHHhhhccccc-----eeeehhhh-HHHHHHHHHhhhhc
Q 003191          230 FPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDF-----VFSMAAGG-IFLFILDRFLRFCQ  301 (840)
Q Consensus       230 ~~GvvAlv~l~lL~vtSl~~iRr~~YElF~~~H~L~ivflv~l~~H~~~~-----~~~~v~~~-ialw~lDRllR~~r  301 (840)
                      ..|++|+++|..|.+||..++|||.=..|...|.+..++.+...+|..-.     ....++.. .+.+.+.|+.+..+
T Consensus       118 tiG~iaflll~pLalTS~k~~~rrlG~rW~~LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~~k~~~  195 (209)
T COG2717         118 TIGMIAFLLLIPLALTSFKWVRRRLGKRWKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTRS  195 (209)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999854999999999988899999997421     11222222 23567778776653

>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses

Probab=87.78  E-value=2.1  Score=52.33  Aligned_cols=16  Identities=25%  Similarity=0.478  Sum_probs=8.2

Q ss_pred             CCCCCCCCCCCCCCCC
Q 003191          504 EPQVGPPPPVPPPQGS  519 (840)
Q Consensus       504 ~~~~~~~p~~~~~~~~  519 (840)
                      .++++++|+++.++++
T Consensus       735 ~~~~~~~~~~~~~~~~  750 (759)
T PF05518_consen  735 VAPAPPAPAPHVPPGA  750 (759)
T ss_pred             cccCCCCCCCCCCCcc
Confidence            4455555555555444

>PRK15313 autotransport protein MisL; Provisional

Probab=86.67  E-value=1.1  Score=55.91  Aligned_cols=11  Identities=18%  Similarity=0.377  Sum_probs=5.1

Q ss_pred             eEEEEEEecCc
Q 003191          364 HSSVLIKVLGE  374 (840)
Q Consensus       364 ~Lsf~IK~~Gg  374 (840)
                      .-.+.|+..||
T Consensus       498 ~T~v~V~N~GG  508 (955)
T PRK15313        498 NTFVAVNNIGG  508 (955)
T ss_pred             eEEEEEEeCCC
Confidence            34455555443

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=86.49  E-value=2.7  Score=48.95  Aligned_cols=13  Identities=23%  Similarity=0.414  Sum_probs=7.3

Q ss_pred             cCCCchhhHHHHH
Q 003191          563 GGIGISPFLAILS  575 (840)
Q Consensus       563 GGsGITP~lsiL~  575 (840)
                      +|.|=.-++.-||
T Consensus       491 ~~dgR~~LmaqIR  503 (569)
T KOG3671|consen  491 SGDGRDALMAQIR  503 (569)
T ss_pred             CcccHHHHHHHHH
Confidence            6667655554444

>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed

Probab=83.63  E-value=1.4  Score=46.41  Aligned_cols=46  Identities=20%  Similarity=0.178  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHHHHHhchhhhhhc-cchhHHHhhhhHHHHHHHhhhcc
Q 003191          230 FPGVISLLAGLMMWATSFHPVRKH-FFQLFFYTHQLYVVFVVFLALHV  276 (840)
Q Consensus       230 ~~GvvAlv~l~lL~vtSl~~iRr~-~YElF~~~H~L~ivflv~l~~H~  276 (840)
                      ..|.+|++.++.|.+||....||+ .| .|..+|.+..+++++...|.
T Consensus       118 ~~G~ia~~lLl~LaiTS~~~~~rrLg~-~Wk~LH~l~Y~a~~L~~~H~  164 (205)
T PRK05419        118 TVGMAAFLILLPLALTSTRASQRRLGK-RWQKLHRLVYLIAILAPLHY  164 (205)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999998886 67 89999999776667888884

>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.73  E-value=6.3  Score=44.34  Aligned_cols=19  Identities=16%  Similarity=0.102  Sum_probs=9.1

Q ss_pred             chHHHHHHHHHHHHHhchhhhh
Q 003191          230 FPGVISLLAGLMMWATSFHPVR  251 (840)
Q Consensus       230 ~~GvvAlv~l~lL~vtSl~~iR  251 (840)
                      +.|+++   +.=-.++.-++|-
T Consensus       267 i~svva---l~~Tyat~epFiD  285 (488)
T KOG3895|consen  267 IASVVA---LTKTYATAEPFID  285 (488)
T ss_pred             HHHHHH---HHhhhhhcccccc
Confidence            444444   3344555555553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	840
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	1e-17
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	9e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-16
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-13
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-11
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-13
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	8e-13
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-11
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	9e-09
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	9e-08
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	8e-07
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	9e-07
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	2e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	8e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	3e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	2e-06
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	5e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	8e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	3e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	5e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-05
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	6e-06
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	1e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	1e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	2e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	5e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	5e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-04
1rm1_C	286	Transcription initiation factor IIA large chain; y	8e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	2e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1g9l_A	144	Polyadenylate-binding protein 1; all-helical domai	3e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	3e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	4e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	5e-04
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	6e-04
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	6e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	8e-04
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	8e-04

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186

 Score = 80.9 bits (199), Expect = 1e-17
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)

Query: 541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKS-CLPRNVLIVWAVK 599
           V+GP+G        YE ++LV  GIG++PF +IL  + ++     +    + +   W  +
Sbjct: 3   VDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCR 62

Query: 600 KSNELSLLSNFYK--ESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYP 654
            ++     ++  +  ES     ++   L   IY+T   E       +H      +  
Sbjct: 63  DTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVIT 119

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186

 Score = 55.1 bits (132), Expect = 9e-09
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 732 LWERKSSARENYKDDSIEV-------DNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFK 784
           L   +S  +E      +         D +Q      H+D  K             RP++ 
Sbjct: 74  LQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWD 133

Query: 785 EIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 838
             F + + +  +  +GV +CGP +L  +++K+  S+S         F F+  +F
Sbjct: 134 NEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNS-ESGPRGVHFIFNKENF 186

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 78.5 bits (193), Expect = 2e-16
 Identities = 35/140 (25%), Positives = 43/140 (30%), Gaps = 27/140 (19%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
           G P  VP P+       P +G              GG S+          V     A   
Sbjct: 113 GIPAGVPMPQAPAGLAGPVRGV-------------GGPSQQVMTPQGRGTVAAAAAAATA 159

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
                    PP    PP P  +G PPP        M               P +GPP  +
Sbjct: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM--------------RPPMGPPMGI 205

Query: 514 PPPQGSPPQRPPPSRHPLLP 533
           PP +G+P   PPP   P  P
Sbjct: 206 PPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 69.3 bits (169), Expect = 2e-13
 Identities = 32/127 (25%), Positives = 38/127 (29%), Gaps = 34/127 (26%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
           GP   V  P+G                                  G P   PP +G PPP
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAA------------------TASIAGAPTQYPPGRGGPPP 177

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
                   P   GP P + PP GPP  +PP +G                T   + PP   
Sbjct: 178 PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG----------------TPMGMPPPGMR 221

Query: 514 PPPQGSP 520
           PPP G  
Sbjct: 222 PPPPGMR 228

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 64.3 bits (156), Expect = 1e-11
 Identities = 33/154 (21%), Positives = 40/154 (25%), Gaps = 21/154 (13%)

Query: 390 DSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV-GPPLPVPPPQ 448
           ++ V      PPP+       P  G             AGG         G P  VP PQ
Sbjct: 75  ENLVSMTVEGPPPKDTGIARVPLAGA------------AGGPGIGRAAGRGIPAGVPMPQ 122

Query: 449 GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 508
                  P++  G P Q    P                            G        G
Sbjct: 123 APAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRG 182

Query: 509 PPPP--------VPPPQGSPPQRPPPSRHPLLPP 534
            PPP        + PP G P   PP    P+  P
Sbjct: 183 APPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMP 216

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 26/100 (26%), Positives = 29/100 (29%), Gaps = 6/100 (6%)

Query: 393 VGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPP 452
           VG P            V          +         G     P +G   P P   G PP
Sbjct: 134 VGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPP 193

Query: 453 PGPPLQEEGPPPQGP----HPPVPPPQGPPPPLPPPKGNL 488
              P    GPP   P     P   PP G  PP P  +G L
Sbjct: 194 GMRPPM--GPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL 231

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 73.3 bits (179), Expect = 2e-13
 Identities = 28/205 (13%), Positives = 49/205 (23%), Gaps = 25/205 (12%)

Query: 392 QVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 451
           +V P   +   +   P   P Q                    A       + +PP    P
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFM------------PPQDPAAAGMSYGQMGMPPQGAVP 54

Query: 452 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPP 511
             G   Q   P  +  H  +         +                  + +    + P  
Sbjct: 55  SMGQQ-QFLTPAQEQLHQQIDQATTSMNDMHLH------------NVPLVDPNAYMQPQV 101

Query: 512 PVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFL 571
           PV        Q+ P +      P+        P     P  L+ E    +       P L
Sbjct: 102 PVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPL 161

Query: 572 AILSDILHRINEGKSCLPRNVLIVW 596
            I  + +   +E  +  P  +    
Sbjct: 162 VIPPERMLVPSELSNASPDYIRSTL 186

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 69.1 bits (168), Expect = 4e-12
 Identities = 26/166 (15%), Positives = 34/166 (20%), Gaps = 6/166 (3%)

Query: 391 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 450
                      P   P    PPQ P    M    + +    +  +      L     Q  
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 451 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 510
                             P V P     P +P   G  +               P  G P
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ------QQQQPMAAPAYGQP 124

Query: 511 PPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYE 556
                    P  +  P       P  IT     P    +P   M  
Sbjct: 125 SAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLV 170

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 64.1 bits (155), Expect = 1e-10
 Identities = 18/104 (17%), Positives = 22/104 (21%), Gaps = 11/104 (10%)

Query: 431 ISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMY 490
           +S     V P   +   Q A P   P Q   P             G PP    P      
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVP------ 54

Query: 491 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 534
                  G      P             +          PL+ P
Sbjct: 55  -----SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP 93

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.9 bits (152), Expect = 3e-10
 Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 2/151 (1%)

Query: 391 SQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 450
           + +       PP+G  P +   Q         +  +     S  + H+     V P    
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 451 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 510
            P  P     G P Q    P+  P    P     +       L  +        P     
Sbjct: 98  QPQVPVQM--GTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLT 155

Query: 511 PPVPPPQGSPPQRPPPSRHPLLPPTKITASV 541
            P PP    P +   PS      P  I +++
Sbjct: 156 LPPPPLVIPPERMLVPSELSNASPDYIRSTL 186

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 61.7 bits (149), Expect = 5e-10
 Identities = 20/98 (20%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 439 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAG 498
           G  + +P           L    PP   P P  PPP  P    PP           ++ G
Sbjct: 18  GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRG 77

Query: 499 --GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 534
             G   T           P   +P   PP +   +   
Sbjct: 78  PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 60.9 bits (147), Expect = 8e-10
 Identities = 28/150 (18%), Positives = 36/150 (24%), Gaps = 27/150 (18%)

Query: 387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP 446
           S           VP       P                   +  ++  +P V  P P PP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAA-----------SDFLAALHPPVTVPDPAPP 51

Query: 447 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 506
           P  AP  G P  +           +  P GP      P                     Q
Sbjct: 52  PPPAPAAGNP-PDTVTGDSVLQRILRGPTGPGTTSLAP---------------AVRYGRQ 95

Query: 507 VGPPPPVPPPQGSPPQRPPPSRHPLLPPTK 536
            GP  P   P  +    P    HP+  P  
Sbjct: 96  PGPEAPASAPPAAGRAVPGLYHHPVPEPDP 125

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 25/118 (21%), Positives = 32/118 (27%), Gaps = 12/118 (10%)

Query: 436 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGP-PPPLPPPKGNLMYENLI 494
            H         P+G+    P                PP   P P P PPP          
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA--------- 55

Query: 495 VVAGGISETEPQVGPPPPVPP-PQGSPPQRPPPS-RHPLLPPTKITASVEGPYGHEVP 550
             AG   +T         +   P G       P+ R+   P  +  AS     G  VP
Sbjct: 56  PAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVP 113

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 21/104 (20%), Positives = 29/104 (27%), Gaps = 13/104 (12%)

Query: 385 SKSESDSQVGPPPPVP----PPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGP 440
           + S+  + + PP  VP    PP   P   +PP     +         +          GP
Sbjct: 31  AASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD---------SVLQRILRGPTGP 81

Query: 441 PLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 484
                 P       P  +     P      VP     P P P P
Sbjct: 82  GTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDP 125

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 56.3 bits (135), Expect = 7e-09
 Identities = 26/107 (24%), Positives = 32/107 (29%), Gaps = 16/107 (14%)

Query: 438 VGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVA 497
           V P    PP    PPP P ++ E  P   P PP   P     P P PK            
Sbjct: 40  VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK------------ 87

Query: 498 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 544
                    V      P     P +  P S      P ++T+S    
Sbjct: 88  ----PKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATA 130

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.9 bits (134), Expect = 9e-09
 Identities = 24/159 (15%), Positives = 33/159 (20%), Gaps = 26/159 (16%)

Query: 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 444
           ++  S + V P    PP    PPP    +                          P    
Sbjct: 32  AQPISVTMVTPADLEPPQAVQPPPEPVVE--------------------------PEPEP 65

Query: 445 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETE 504
            P    P   P + E+  P   P P         P            +          T 
Sbjct: 66  EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTS 125

Query: 505 PQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG 543
                    P    +   R      P  P       +EG
Sbjct: 126 STATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEG 164

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 26/135 (19%), Positives = 36/135 (26%), Gaps = 19/135 (14%)

Query: 414 GPVRNLMYENLILVAGGI-SEANPHVGPPLPVPPPQG---APPPGPPLQEEGPPPQGPHP 469
           G   +  + +  LV  G     +  +  P P  P       P    P Q   PPP+    
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVE 60

Query: 470 PVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 529
           P P P+  P P                       E     P P P P     ++P     
Sbjct: 61  PEPEPEPIPEPPKEAP---------------VVIEKPKPKPKPKPKPVKKVQEQPKRDVK 105

Query: 530 PLLPPTKITASVEGP 544
           P+            P
Sbjct: 106 PVESRPASPFENTAP 120

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.8 bits (126), Expect = 9e-08
 Identities = 21/122 (17%), Positives = 26/122 (21%), Gaps = 17/122 (13%)

Query: 434 ANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENL 493
               + PP  V PP        P  E  P P    P V     P P   P          
Sbjct: 41  TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP-------- 92

Query: 494 IVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHL 553
                     +     P     P  S P  P  +  P    +    +        V    
Sbjct: 93  ---------VKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143

Query: 554 MY 555
             
Sbjct: 144 RA 145

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 49.7 bits (117), Expect = 8e-07
 Identities = 26/161 (16%), Positives = 33/161 (20%), Gaps = 36/161 (22%)

Query: 385 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 444
           +  +S SQ+   PPVPPP  H P     Q                        +      
Sbjct: 27  TLPKSPSQLRKGPPVPPPPKHTPSKEVKQ----------------------EQILSLFED 64

Query: 445 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETE 504
                     P    E     G   P    Q P                       S + 
Sbjct: 65  TFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAA--------------SSSL 110

Query: 505 PQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPY 545
           P V          G+        R  L P        +  Y
Sbjct: 111 PAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDY 151

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 49.7 bits (117), Expect = 9e-07
 Identities = 15/149 (10%), Positives = 24/149 (16%), Gaps = 19/149 (12%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455
             P   PE      H P+                  +            P      PP P
Sbjct: 2   GSPAATPE--IRVNHEPE-----------------PAGGATPGATLPKSPSQLRKGPPVP 42

Query: 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 515
           P  +  P  +     +                           G ++       P     
Sbjct: 43  PPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAA 102

Query: 516 PQGSPPQRPPPSRHPLLPPTKITASVEGP 544
            + +    P             T      
Sbjct: 103 SEAASSSLPAVVVETFPATVNGTVEGGSG 131

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 24/134 (17%), Positives = 28/134 (20%), Gaps = 20/134 (14%)

Query: 389 SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQ 448
           +     P    P    +PP      G              GG        G   P     
Sbjct: 14  TGGSRYPGQGSPGGNRYPPQGGGGWGQP-----------HGGGWGQPHGGGWGQPHGGGW 62

Query: 449 GAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVG 508
           G P  G   Q  G    G          P  P    K          VAG  +      G
Sbjct: 63  GQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKH---------VAGAAAAGAVVGG 113

Query: 509 PPPPVPPPQGSPPQ 522
               +     S P 
Sbjct: 114 LGGYMLGSAMSRPL 127

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 20/153 (13%), Positives = 26/153 (16%), Gaps = 37/153 (24%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
           G      P  G                                   P    P     PP 
Sbjct: 1   GSKKRPKPGGGWNTG---------------------------GSRYPGQGSPGGNRYPPQ 33

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
           G     +        P       P                    GG  +     G     
Sbjct: 34  GGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH----------GGGWGQPHGGGGWGQGG 83

Query: 514 PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 546
              Q + P +P  +   +       A V G  G
Sbjct: 84  THGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGG 116

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 11/102 (10%), Positives = 14/102 (13%), Gaps = 18/102 (17%)

Query: 451 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 510
               P            +P    P G   P     G                        
Sbjct: 2   SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGG------------------WGQPHG 43

Query: 511 PPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH 552
                P G    +P                  G    +   H
Sbjct: 44  GGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTH 85

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 22/100 (22%)

Query: 432 SEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP-PQGPHPPVPPPQGPPPPLPPPKGNLMY 490
           S+A P       +             Q   PP    P P   PPQG PP   PP+G    
Sbjct: 360 SDAAPS-ADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGY--- 415

Query: 491 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 530
                             P    PPPQG+PPQ  PP+  P
Sbjct: 416 -----------------PPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 29/109 (26%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 375 WTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEA 434
           W      +   ++E D       P        P     Q      M + +          
Sbjct: 332 WVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP- 390

Query: 435 NPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 483
                PP    PPQG PP G P Q   P    P P   PPQG PP  PP
Sbjct: 391 -QGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 23/90 (25%), Positives = 25/90 (27%), Gaps = 18/90 (20%)

Query: 443 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISE 502
           P      A P     Q +                PP    PP                 +
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP----------------PQ 398

Query: 503 TEPQVGPPPPVPPPQGSPPQ--RPPPSRHP 530
             P  G PP   PPQG PPQ   PPP   P
Sbjct: 399 GYPPQGYPPQGYPPQGYPPQGYPPPPQGAP 428

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 11/84 (13%), Positives = 21/84 (25%)

Query: 453 PGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPP 512
           P          P      +P PQ P PP      + + + +  +     + + +      
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 513 VPPPQGSPPQRPPPSRHPLLPPTK 536
            P     P  +            K
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQKKK 88

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 11/91 (12%), Positives = 19/91 (20%), Gaps = 1/91 (1%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
           P          P PV       +             + +    +   L + P Q      
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAAL-GALALQPKQKQKRAQ 63

Query: 455 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPK 485
              ++  PP          P       P  +
Sbjct: 64  KKPKKTPPPKPKKTQKPKKPTQKKKSKPGKR 94

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 15/96 (15%), Positives = 21/96 (21%), Gaps = 14/96 (14%)

Query: 440 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQ-GPPPPLPPPKGNLMYENLIVVAG 498
                   + AP          P PQ P PP           L    G L  +       
Sbjct: 7   QTFYGRRWRPAPVQRYI-----PQPQPPAPPRRRRGPSQLQQLVAALGALALQP------ 55

Query: 499 GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPP 534
              + + +    P   PP      + P         
Sbjct: 56  --KQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKS 89

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 17/109 (15%), Positives = 22/109 (20%), Gaps = 19/109 (17%)

Query: 440 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGG 499
            P P PP       GP   ++     G     P  +       P K              
Sbjct: 23  IPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTP------------ 70

Query: 500 ISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHE 548
                P        P       +  P  R       KI      P   +
Sbjct: 71  -----PPKPKKTQKPKKPTQKKKSKPGKRMRN--CMKIENDCIFPVMLD 112

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 49.0 bits (115), Expect = 5e-06
 Identities = 22/171 (12%), Positives = 35/171 (20%), Gaps = 16/171 (9%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
           P PP   P         P  P          L A   + +        P  P +    P 
Sbjct: 15  PGPPRIAPPKLACRTPSPARP---------ALRAPASATSGSRKRARPPAAPGRDQARPP 65

Query: 455 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYEN-------LIVVAGGISETEPQV 507
              +      +   P  P     P    P +              L       + +E   
Sbjct: 66  ARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELAS 125

Query: 508 GPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENL 558
                          +            +     E P G + P +  +  L
Sbjct: 126 CLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHAL 176

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 46.3 bits (108), Expect = 4e-05
 Identities = 26/172 (15%), Positives = 39/172 (22%), Gaps = 9/172 (5%)

Query: 384 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLP 443
            S +    +          +   PP  P +   R      L L        +    P  P
Sbjct: 30  PSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL------SVDEVSSPSTP 83

Query: 444 VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 503
             P   A P      ++  P  G  P +   Q                 L      +  +
Sbjct: 84  EAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKAS 143

Query: 504 EPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMY 555
                      P     P+ P   + P        A    P G  +PY    
Sbjct: 144 AQD--AGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLP-GLVLPYKYQV 192

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 13/99 (13%), Positives = 19/99 (19%), Gaps = 13/99 (13%)

Query: 431 ISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMY 490
           ++  N        +   +         + +  PP G      P  G      P       
Sbjct: 144 VTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPG------ 197

Query: 491 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 529
                               P  PPP     Q      H
Sbjct: 198 -------AVPGGDRFPGPAGPGGPPPPFPAGQTHHHHHH 229

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 428 AGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQG-PPPPLPPP 484
             G        GPP                +  G  P G   P P   G PPPP P  
Sbjct: 164 QSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAG 221

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 14/82 (17%), Positives = 24/82 (29%)

Query: 455 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 514
              +   P P     P    Q  P P      + + +    V+  +     +   P P P
Sbjct: 8   MLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRP 67

Query: 515 PPQGSPPQRPPPSRHPLLPPTK 536
           PP+        P +     P +
Sbjct: 68  PPRQKKQAPKQPPKPKKPKPQE 89

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 3/91 (3%)

Query: 396 PPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 455
           P P             P      L  +   L     + +   +G       P+  PPP  
Sbjct: 15  PAPTAMWRPRRRRQAAPMPARNGLASQIQQLTT---AVSALVIGQATRPQNPRPRPPPRQ 71

Query: 456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 486
             Q    PP+   P     +   P    P  
Sbjct: 72  KKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 17/90 (18%), Positives = 23/90 (25%)

Query: 395 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPG 454
                P       P+    G    +      + A  I +A     P    PP Q    P 
Sbjct: 18  TAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPK 77

Query: 455 PPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 484
            P + + P PQ      P    P       
Sbjct: 78  QPPKPKKPKPQEKKKKQPAKTKPGKRQRMA 107

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.8 bits (109), Expect = 2e-05
 Identities = 23/153 (15%), Positives = 34/153 (22%), Gaps = 6/153 (3%)

Query: 369 IKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQ---GPVRNLMYENLI 425
           I                + E  S+           G      P          +   N  
Sbjct: 338 IGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNY 397

Query: 426 LVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ--EEGPPPQGPHPPVPPPQGP-PPPLP 482
           +  G  S  N      +PV P +       P          +  + P    + P PP  P
Sbjct: 398 VTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKP 457

Query: 483 PPKGNLMYENLIVVAGGISETEPQVGPPPPVPP 515
                  YE    +         +  P PP   
Sbjct: 458 TAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 45.7 bits (106), Expect = 5e-05
 Identities = 22/123 (17%), Positives = 33/123 (26%), Gaps = 17/123 (13%)

Query: 363 YHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHP--PQGPVRNLM 420
           ++ +  IK+ G           + +       P  P         P       G +R   
Sbjct: 383 WYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIR--- 439

Query: 421 YENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPP 480
                      +   P V    P PP +   P  P  + E P    P  P    + P PP
Sbjct: 440 -----------AVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKE-PTPP 487

Query: 481 LPP 483
              
Sbjct: 488 TRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 44.5 bits (103), Expect = 1e-04
 Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 451 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPP 510
           P     +         P   +P   G               N  + A       P+V   
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRA----VNVPKVTKE 449

Query: 511 PPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG----PYGHEVPYH 552
            P PP + + P +P       L P  +  + E     P   E  +H
Sbjct: 450 KPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHHH 495

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.4 bits (109), Expect = 3e-05
 Identities = 15/97 (15%), Positives = 21/97 (21%), Gaps = 2/97 (2%)

Query: 432 SEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNL-MY 490
           +     +  P P PPP  A  PG                  P   P  P P   G    +
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGAT-PGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 491 ENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPS 527
            +L       +                G+        
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 46.5 bits (109), Expect = 3e-05
 Identities = 11/164 (6%), Positives = 25/164 (15%), Gaps = 28/164 (17%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 453
           G    +   E         +                     +              A   
Sbjct: 31  GANTELVSGESEHSTNEADKQN----------------EGEHARENKLEKAEGVATASET 74

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
             P   E    +                   +               +E +P+       
Sbjct: 75  ASPASNEAATTETAEAASAAKPEEKASEVVAETP------------SAEAKPKSDKETEA 122

Query: 514 PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYEN 557
            P   +      P+        ++   V       +    +  N
Sbjct: 123 KPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFN 166

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 12/118 (10%), Positives = 21/118 (17%), Gaps = 12/118 (10%)

Query: 433 EANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYEN 492
           E     G    VP   GA       + E    +                           
Sbjct: 15  ENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEG------- 67

Query: 493 LIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVP 550
              VA       P           + +   +P           +  ++   P   +  
Sbjct: 68  ---VATASETASPASNEAATTETAEAASAAKPEEKASE--VVAETPSAEAKPKSDKET 120

>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} Length = 286

 Score = 44.5 bits (103), Expect = 8e-05
 Identities = 16/170 (9%), Positives = 34/170 (20%), Gaps = 5/170 (2%)

Query: 366 SVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLI 425
             L  +   W + L +  ++    D+Q                +  P         +   
Sbjct: 33  QTLQDLKNIWQKKLTETKVTTFSWDNQFNEGNINGVQNDLNFNLATPGVNSSEFNIKEEN 92

Query: 426 LVAGGISEANPHVGPPLP-----VPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPP 480
               G+   N +    +P                           G        Q     
Sbjct: 93  TGNEGLILPNINSNNNIPHSGETNINTNTVEATNNSGATLNTNTSGNTNADVTSQPKIEV 152

Query: 481 LPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 530
            P  +  +   N+  V     E+E +          +    +        
Sbjct: 153 KPEIELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKL 202

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 18/171 (10%), Positives = 31/171 (18%), Gaps = 25/171 (14%)

Query: 394 GPPPPVPPPEGHPPPVHPPQGPVRNL------------------MYENLILVAGGISEAN 435
           G      P +      +        L                  M   L  V   +   +
Sbjct: 278 GRYVDGLPEDDPVLKTYDS---YGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQD 334

Query: 436 PHVGPP----LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYE 491
             V  P    +  P              +       H            L  P  +    
Sbjct: 335 TGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDV 394

Query: 492 NLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 542
              V+   +     Q                    S    LP  ++ A ++
Sbjct: 395 AASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD 445

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 43.8 bits (102), Expect = 2e-04
 Identities = 12/92 (13%), Positives = 17/92 (18%), Gaps = 12/92 (13%)

Query: 439 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAG 498
                         PG     + P               P   P  +             
Sbjct: 238 LDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTR----------R 287

Query: 499 GISETEPQVGPPPPV--PPPQGSPPQRPPPSR 528
             +E+   V  P  V       S  + P  S 
Sbjct: 288 SETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 11/98 (11%), Positives = 19/98 (19%), Gaps = 19/98 (19%)

Query: 454 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPV 513
                 +          V P + P                            Q     P 
Sbjct: 238 LDERSYQRAVITNRPGSVSPIKSPTSNFTTNT-------------------TQSVGSVPF 278

Query: 514 PPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPY 551
             P     +    S +P+  P  +         ++ PY
Sbjct: 279 SAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPY 316

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-04
 Identities = 57/397 (14%), Positives = 102/397 (25%), Gaps = 141/397 (35%)

Query: 503 TEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVA 562
            + QV     V         R  P         K+  ++           L     +L+ 
Sbjct: 121 NDNQVFAKYNVS--------RLQPY-------LKLRQAL---------LELRPAKNVLID 156

Query: 563 GGIGISPFLAILSDILHRINEGKSCLPRNVL------------IVWA-VKKSNE----LS 605
           G +G                 GK+ +  +V             I W  +K  N     L 
Sbjct: 157 GVLGS----------------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 606 LLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLV 665
           +L     +    + S   +                + EL + + S  Y       + VL 
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHS-----IQAELRRLLKSKPYEN----CLLVL- 250

Query: 666 GTGNNVWSGLYVISSTVGFIILV---------ALLNILYVNPFNIHSWWYKGL------- 709
               NV +     +  +   IL+          L      +    H      L       
Sbjct: 251 ---LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM--TLTPDEVKS 305

Query: 710 LFL-------------ACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNV 756
           L L                     +   ++I             E+ +D     DN ++V
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRL---SIIA------------ESIRDGLATWDNWKHV 350

Query: 757 GTMAHNDIRKKDTKSSTNILYGS--RPDFKE--IFGSTSK--------KWGHVDVGVIVC 804
                  I     +SS N+L  +  R  F    +F  ++          W  V       
Sbjct: 351 NCDKLTTII----ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------ 400

Query: 805 GPPSLQSSVAKEIRSHSLM-RECHDPIFHFHSHSFDL 840
              S    V  ++  +SL+ ++  +      S   +L
Sbjct: 401 --KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A Length = 144

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 7/49 (14%), Positives = 9/49 (18%)

Query: 436 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 484
           P        P  +  P          P       P    Q P   +   
Sbjct: 2   PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ 50

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 8/103 (7%)

Query: 427 VAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKG 486
                +    + GP  P PP  GA P G P  ++   P+ P PP P              
Sbjct: 11  PGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATL 70

Query: 487 NLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 529
                +         + E         PPP G+   +    R 
Sbjct: 71  REHLRD--------IKAENTDANFYVCPPPTGATVVQFEQPRR 105

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 541 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 600
           V+ P+G           +IL+AGG G S   +IL   L R         R++ I W  ++
Sbjct: 88  VDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALAR------NPNRDITIYWGGRE 141

Query: 601 SNEL 604
              L
Sbjct: 142 EQHL 145

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 26/165 (15%), Positives = 39/165 (23%), Gaps = 17/165 (10%)

Query: 386 KSESDSQVGPPPPVPPPEG------HPPPVHPPQGPVRN--LMYENLILVAGGISEANPH 437
           K E+ SQV    P            H      P          Y+    V   IS   P 
Sbjct: 3   KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62

Query: 438 VGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVA 497
            G           P      +   P    P   +            P       +LI+  
Sbjct: 63  HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSP---ASIPHLILE- 118

Query: 498 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 542
             + + EP     P V     +  Q+   +R      +      +
Sbjct: 119 --LLKCEP---DEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCK 158

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 13/138 (9%), Positives = 26/138 (18%), Gaps = 22/138 (15%)

Query: 424 LILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPP 483
           + L A G                 +         + +   P  P               P
Sbjct: 74  ITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMP 133

Query: 484 --------------------PKGNLMYENLI--VVAGGISETEPQVGPPPPVPPPQGSPP 521
                                 G ++ E++   +  G             P      +  
Sbjct: 134 SVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTE 193

Query: 522 QRPPPSRHPLLPPTKITA 539
              P +R  +    +  A
Sbjct: 194 GEFPETREKMSGIRRAIA 211

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 11/66 (16%)

Query: 541 VEGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV 598
             GP+G    ++L  +   ++++AGG GI+PFL++L  +  + +E        V +V+ V
Sbjct: 197 FTGPFGS---FYLRDVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE------HPVRLVFGV 247

Query: 599 KKSNEL 604
            +  +L
Sbjct: 248 TQDCDL 253

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 440 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQ--GPPPP----LPPPKG 486
           PP   P P GA P  PP     P P       PPP   G PP      PPP  
Sbjct: 57  PPGATPAPPGAAP--PPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPPST 107

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.0 bits (98), Expect = 8e-04
 Identities = 22/151 (14%), Positives = 29/151 (19%), Gaps = 19/151 (12%)

Query: 387 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPP 446
              D        V      P        P  +                 P +GP +  P 
Sbjct: 8   HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLH-----------------PSLGPGIGSPG 50

Query: 447 PQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQ 506
              +P         G  P  P   +  P GP     P    L +                
Sbjct: 51  QLHSPISTLSSPINGMGP--PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSS 108

Query: 507 VGPPPPVPPPQGSPPQRPPPSRHPLLPPTKI 537
                P     G       PS +       I
Sbjct: 109 SEDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 510 PPPVPPPQGSPPQRPPPSR-----HPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGG 564
            PP             P         L P  K+   + GPYG +         ++ + GG
Sbjct: 109 TPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVM--MSGPYG-DFHIQDTDAEMLYIGGG 165

Query: 565 IGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNE 603
            G++P  A +  +   +  G     R V   +  +  NE
Sbjct: 166 AGMAPLRAQILHLFRTLKTG-----RKVSYWYGARSKNE 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	840
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	99.92
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	99.92
1tvc_A	250	Methane monooxygenase component C, methane monooxy	99.91
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	99.91
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	99.91
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	99.9
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	99.9
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	99.9
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	99.89
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	99.89
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	99.89
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.89
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.89
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	99.88
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.87
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	99.87
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	99.87
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	99.87
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	99.87
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	99.87
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	99.86
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	99.86
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	99.84
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	99.83
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	99.83
2gpj_A	252	Siderophore-interacting protein; structural genomi	99.62
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	99.54
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	99.53
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	99.39
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	99.35
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	99.32
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	99.31
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.29
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	99.26
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	99.24
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.18

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=99.92  E-value=9.1e-25  Score=226.14  Aligned_cols=167  Identities=16%  Similarity=0.215  Sum_probs=132.1

Q ss_pred             ccceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCC--CCceeceEeeeCCCCCCCeEEEEEEec-----
Q 003191          303 RRTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL-----  372 (840)
Q Consensus       303 ~~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is--~~q~HPFTIaSsp~~~~~~Lsf~IK~~-----  372 (840)
                      ++.+++.+++.+++++.++++..+.   ...++||||++|+++..+  ..++|||||+|.+++  +.++|+||..     
T Consensus         3 ~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~~~i~vk~~~~~~~   80 (243)
T 4eh1_A            3 GRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASNG--REYRISVKREGVGSD   80 (243)
T ss_dssp             CEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCS--SCEEEEEECTTTTSS
T ss_pred             cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEecCCCccccceeeEeccCCCC--CeEEEEEEEeecCCC
Confidence            3467889999999999999998654   367999999999998543  337899999998853  7899999999     


Q ss_pred             --CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCC
Q 003191          373 --GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA  450 (840)
Q Consensus       373 --Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (840)
                        |.+|+.|++.+..                                                                 
T Consensus        81 ~~G~~S~~l~~~l~~-----------------------------------------------------------------   95 (243)
T 4eh1_A           81 NPGLVSHYLHNNVKV-----------------------------------------------------------------   95 (243)
T ss_dssp             SCCHHHHHHHHHCCT-----------------------------------------------------------------
T ss_pred             CCCeehhHHHhcCCC-----------------------------------------------------------------
Confidence              8899999765311                                                                 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          451 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP  530 (840)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  530 (840)
                                                                                                      
T Consensus        96 --------------------------------------------------------------------------------   95 (243)
T 4eh1_A           96 --------------------------------------------------------------------------------   95 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHH
Q 003191          531 LLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  610 (840)
Q Consensus       531 ~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~  610 (840)
                         |+  ++.|+||||.+... ..+++++|||||+||||++++++++..+.      ..+ ++|+|++|+.+++.+.++ 
T Consensus        96 ---G~--~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~------~~~-v~l~~~~r~~~~~~~~~e-  161 (243)
T 4eh1_A           96 ---GD--SVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQN------KSG-VTYLYACNSAKEHTFAQE-  161 (243)
T ss_dssp             ---TC--EEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTT------CCS-EEEEEEESSGGGCTTHHH-
T ss_pred             ---CC--EEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcC------CCe-EEEEEEeCChhhhhHHHH-
Confidence               12  58899999998765 67899999999999999999999998753      123 999999999999865544 


Q ss_pred             HHHccCCCCCCCCceEEEEEEeCCC
Q 003191          611 YKESICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       611 l~el~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      ++++.    .+. +++++++++++.
T Consensus       162 l~~l~----~~~-~~~~~~~~s~~~  181 (243)
T 4eh1_A          162 TAQLI----AQQ-GWMQQVWYRDES  181 (243)
T ss_dssp             HHHHH----HHH-TCEEEEEESSCC
T ss_pred             HHHHH----HhC-CeEEEEEEccCC
Confidence            44443    122 678888887654

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=99.92  E-value=4.7e-24  Score=219.59  Aligned_cols=166  Identities=22%  Similarity=0.256  Sum_probs=128.5

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  382 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~  382 (840)
                      .+++.+++.+++++.++++..+..+.++||||++|+++.   .++|||||+|.+.+ ++.++|.||..  |++|+++.+.
T Consensus         4 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~---~~~R~ySi~s~~~~-~~~l~l~i~~~~~G~~s~~~~~~   79 (232)
T 1qfj_A            4 SCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDE---RDKRPFSMASTPDE-KGFIELHIGASEINLYAKAVMDR   79 (232)
T ss_dssp             EEEEEEEEESSSSCEEEEEEESSCCCCCTTCEEEEESSS---SCEEEEECCSCTTS-TTCEEEEEC------CCHHHHHH
T ss_pred             EEEEEEEEecCCCEEEEEEecCCCCCcCCCCEEEEECCC---CceeeeecCCCCCC-CCcEEEEEEEccCCchhHHHHHh
Confidence            467888899999999999987767789999999999985   58899999999864 57899999997  4578877665


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          383 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP  462 (840)
Q Consensus       383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (840)
                      +...                                                                            
T Consensus        80 l~~G----------------------------------------------------------------------------   83 (232)
T 1qfj_A           80 ILKD----------------------------------------------------------------------------   83 (232)
T ss_dssp             HHHH----------------------------------------------------------------------------
T ss_pred             CCCC----------------------------------------------------------------------------
Confidence            5321                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeec
Q 003191          463 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE  542 (840)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~Ve  542 (840)
                                                                                              +  ++.|+
T Consensus        84 ------------------------------------------------------------------------d--~v~v~   89 (232)
T 1qfj_A           84 ------------------------------------------------------------------------H--QIVVD   89 (232)
T ss_dssp             ------------------------------------------------------------------------S--EEEEE
T ss_pred             ------------------------------------------------------------------------C--EEEEe
Confidence                                                                                    2  57789


Q ss_pred             cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191          543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  622 (840)
Q Consensus       543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~  622 (840)
                      ||||.+......+++++|||||+||||++++++++..+.      ..++++|+|++|+.+++.+. ++++++.    .+.
T Consensus        90 gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~-~el~~l~----~~~  158 (232)
T 1qfj_A           90 IPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN------PNRDITIYWGGREEQHLYDL-CELEALS----LKH  158 (232)
T ss_dssp             EEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC------TTCCEEEEEEESSGGGCTTH-HHHHHHH----HHC
T ss_pred             CCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC------CCCcEEEEEeeCCHHHhhhH-HHHHHHH----HHC
Confidence            999998654345899999999999999999999998753      13579999999999998544 4445543    122


Q ss_pred             CceEEEEEEeCCC
Q 003191          623 LNLETFIYVTRET  635 (840)
Q Consensus       623 ~~l~I~iyVTr~~  635 (840)
                      .+++++.++++++
T Consensus       159 ~~~~~~~~~s~~~  171 (232)
T 1qfj_A          159 PGLQVVPVVEQPE  171 (232)
T ss_dssp             TTEEEEEEESSCC
T ss_pred             CCeEEEEEEcCCC
Confidence            4688888887654

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=99.91  E-value=4.7e-24  Score=222.48  Aligned_cols=167  Identities=22%  Similarity=0.286  Sum_probs=130.9

Q ss_pred             cceEEEEEEEecCceEEEEEeC-C-C----CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--Cch
Q 003191          304 RTVDVLSASCLPCGTVELVLSK-P-A----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW  375 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~-p-~----~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~  375 (840)
                      ..+++.+++.+.+++.++++.. + .    .+.++||||++|++|.  ..++|||||+|.+.+ ++.++|+||..  |.+
T Consensus        11 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~~-~~~l~i~vk~~~~G~~   87 (250)
T 1tvc_A           11 FEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG--TDVSRSYSPANLPNP-EGRLEFLIRVLPEGRF   87 (250)
T ss_dssp             EEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS--CSSSEEECCBCCSSS-SCCEEEEECCCTTSSS
T ss_pred             EEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeCC--CccccccccCCCCCC-CCeEEEEEEECCCCCc
Confidence            3556777888899999999987 6 4    5789999999999975  358899999999864 57899999998  899


Q ss_pred             hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003191          376 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP  455 (840)
Q Consensus       376 TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (840)
                      |+.|++.+..                                                                      
T Consensus        88 s~~l~~~l~~----------------------------------------------------------------------   97 (250)
T 1tvc_A           88 SDYLRNDARV----------------------------------------------------------------------   97 (250)
T ss_dssp             HHHHHHHSSS----------------------------------------------------------------------
T ss_pred             hHHHHhcCCC----------------------------------------------------------------------
Confidence            9999754311                                                                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT  535 (840)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~  535 (840)
                                                                                                    |+
T Consensus        98 ------------------------------------------------------------------------------Gd   99 (250)
T 1tvc_A           98 ------------------------------------------------------------------------------GQ   99 (250)
T ss_dssp             ------------------------------------------------------------------------------SS
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          12


Q ss_pred             ceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc
Q 003191          536 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  615 (840)
Q Consensus       536 ~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~  615 (840)
                        ++.|+||||.+......+++++|||||+||||++++++++..+.      ..++++|+|++|+.+++. +.++++++.
T Consensus       100 --~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~-~~~el~~l~  170 (250)
T 1tvc_A          100 --VLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT------APNETRIYFGVNTEPELF-YIDELKSLE  170 (250)
T ss_dssp             --EEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT------CCSCEEEEEECSSSTTCC-CHHHHHHHH
T ss_pred             --EEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC------CCceEEEEEEeCCHHHhh-hHHHHHHHH
Confidence              57899999998654345689999999999999999999998753      135799999999999984 444555542


Q ss_pred             CCCCCCCCceEEEEEEeCC
Q 003191          616 CPFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~  634 (840)
                          .+..+++++.++|++
T Consensus       171 ----~~~~~~~~~~~~s~~  185 (250)
T 1tvc_A          171 ----RSMRNLTVKACVWHP  185 (250)
T ss_dssp             ----HHSSSCEEEECCSSC
T ss_pred             ----HhCCCeEEEEEeccC
Confidence                122457887777765

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=99.91  E-value=5.5e-24  Score=224.53  Aligned_cols=152  Identities=20%  Similarity=0.262  Sum_probs=123.8

Q ss_pred             ccceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191          303 RRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  380 (840)
Q Consensus       303 ~~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~  380 (840)
                      ....++.+++.++++++++++..+..+.++||||++|+++..+..++|||||+|.++  ++.++|+||..  |.+|+.|.
T Consensus        19 ~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~~~~~G~~s~~l~   96 (271)
T 4fk8_A           19 FDTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSIKVQNGPLTSRLQ   96 (271)
T ss_dssp             EEEEEEEEEEEEETTEEEEEECCCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEECCTTCTTHHHHT
T ss_pred             ceeEEEEEEEEcCCCEEEEEEEcCCCCCcCCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEEEECCCchhhHHh
Confidence            356788999999999999999988788999999999999976677899999999885  36899999998  88998773


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          381 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE  460 (840)
Q Consensus       381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (840)
                      + +  +                                                                          
T Consensus        97 ~-l--~--------------------------------------------------------------------------   99 (271)
T 4fk8_A           97 H-L--K--------------------------------------------------------------------------   99 (271)
T ss_dssp             T-C--C--------------------------------------------------------------------------
T ss_pred             c-C--C--------------------------------------------------------------------------
Confidence            1 1  0                                                                          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeee
Q 003191          461 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS  540 (840)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~  540 (840)
                                                                                              +|+  ++.
T Consensus       100 ------------------------------------------------------------------------~Gd--~v~  105 (271)
T 4fk8_A          100 ------------------------------------------------------------------------VGD--PVL  105 (271)
T ss_dssp             ------------------------------------------------------------------------TTC--EEE
T ss_pred             ------------------------------------------------------------------------CCC--EEE
Confidence                                                                                    013  588


Q ss_pred             ec-cCcCCCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191          541 VE-GPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  614 (840)
Q Consensus       541 Ve-GPYG~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el  614 (840)
                      |+ ||||.+.... ..+++++|||||+||||++++++++..+..      .++++|+|++|+.+++.+. ++++++
T Consensus       106 v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~-~el~~l  174 (271)
T 4fk8_A          106 IGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYER------FDKVVLTHTCRLKGELAYM-DYIKHD  174 (271)
T ss_dssp             EESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHH------CSEEEEEECCCSHHHHHHH-HHHHTC
T ss_pred             EecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCC------CCCEEEEEecCCHHHHhHH-HHHHHH
Confidence            99 9999976542 368999999999999999999999876541      3589999999999998654 444444

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=99.91  E-value=2e-23  Score=224.88  Aligned_cols=176  Identities=16%  Similarity=0.150  Sum_probs=134.7

Q ss_pred             cceEEEEEEEec-----CceEEEEEeCCCCcccCCCcEEEEEEcCCC------CCceeceEeeeCCCCC---CCeEEEEE
Q 003191          304 RTVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVRELS------WLQWHPFSVSSSPLEG---KYHSSVLI  369 (840)
Q Consensus       304 ~~~~vasv~~Lp-----~~vvrLtI~~p~~~~~~PGQhvfL~vP~is------~~q~HPFTIaSsp~~~---~~~Lsf~I  369 (840)
                      ..+++++++.+.     ++++++++..+..+.|+||||++|++|..+      .+++|||||+|+|.++   .+.++|+|
T Consensus        29 ~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~V  108 (311)
T 3lo8_A           29 FTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCV  108 (311)
T ss_dssp             EEEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEE
T ss_pred             eEEEEEeeEeccCCCCCCccEEEEEeCCCCCcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEE
Confidence            456788999998     899999999887889999999999998642      3589999999998642   47899999


Q ss_pred             Eec---------------CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccC
Q 003191          370 KVL---------------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEA  434 (840)
Q Consensus       370 K~~---------------Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (840)
                      |..               |.+|+.|.+ +.                                                  
T Consensus       109 k~~~~~~~~~~~~~~~~~G~~S~~L~~-l~--------------------------------------------------  137 (311)
T 3lo8_A          109 RRAVYYDPETGKEDPSKNGVCSNFLCN-SK--------------------------------------------------  137 (311)
T ss_dssp             ECCCCCCTTTCCCCGGGSCHHHHHHHT-CC--------------------------------------------------
T ss_pred             EEEEecccccCcCCcCCCCchhhHHhc-CC--------------------------------------------------
Confidence            965               788888854 21                                                  


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCC
Q 003191          435 NPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP  514 (840)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  514 (840)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (311)
T 3lo8_A          138 --------------------------------------------------------------------------------  137 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCceeeeeccCcCCCCcCc--cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceE
Q 003191          515 PPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV  592 (840)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~--~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV  592 (840)
                                        +|+  ++.|+||||.+....  ..+++++|||||+||||+++++++++.+...+. ...+++
T Consensus       138 ------------------~Gd--~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v  196 (311)
T 3lo8_A          138 ------------------PGD--KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNY-RFGGLA  196 (311)
T ss_dssp             ------------------TTC--EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTC-CCCSEE
T ss_pred             ------------------CcC--EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccc-cCCCCE
Confidence                              013  578899999976432  368899999999999999999999986542111 123689


Q ss_pred             EEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC
Q 003191          593 LIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       593 ~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      +|+|++|+.+++.+. ++++++.   .....++++++++|+++
T Consensus       197 ~l~~g~r~~~d~~~~-~el~~l~---~~~~~~~~~~~~~s~~~  235 (311)
T 3lo8_A          197 WLFLGVANSDSLLYD-EEFTSYL---KQYPDNFRYDKALSREQ  235 (311)
T ss_dssp             EEEEEESSGGGCSSH-HHHHHHH---HHCTTTEEEEEEETTTC
T ss_pred             EEEEecCChHHhhHH-HHHHHHH---HhCCCcEEEEEEECCCC
Confidence            999999999988554 4444543   11223789999998864

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=99.90  E-value=3.9e-23  Score=223.11  Aligned_cols=176  Identities=20%  Similarity=0.211  Sum_probs=132.9

Q ss_pred             ceEEEEEEEecCc-----eEEEEEeCCCCcccCCCcEEEEEEcCCC----CCceeceEeeeCCCC---CCCeEEEEEEec
Q 003191          305 TVDVLSASCLPCG-----TVELVLSKPANLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLE---GKYHSSVLIKVL  372 (840)
Q Consensus       305 ~~~vasv~~Lp~~-----vvrLtI~~p~~~~~~PGQhvfL~vP~is----~~q~HPFTIaSsp~~---~~~~Lsf~IK~~  372 (840)
                      ..++.+++.+.++     +.++++..+..+.|+||||++|++|...    .+++|||||+|++..   +++.++|+||..
T Consensus        35 ~~~V~~~~~l~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~  114 (310)
T 3vo2_A           35 VGRCLSNTRITGDDAPGETWHMVFSTEGEIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  114 (310)
T ss_dssp             EEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECC
T ss_pred             EEEEEEEEEccCCCCCccEEEEEEeCCCCCcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEE
Confidence            4577888888776     9999999877789999999999998643    347899999999863   357899999985


Q ss_pred             -----------CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCC
Q 003191          373 -----------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPP  441 (840)
Q Consensus       373 -----------Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (840)
                                 |.+|+.|++ +..                                                        
T Consensus       115 ~~~~~~~~~~~G~~S~~L~~-l~~--------------------------------------------------------  137 (310)
T 3vo2_A          115 VYTNDQGEIVKGVCSNFLCD-LKP--------------------------------------------------------  137 (310)
T ss_dssp             EEECTTSCEEECHHHHHHHT-CCT--------------------------------------------------------
T ss_pred             EeccCCCCcCCcchhhHHhc-CCC--------------------------------------------------------
Confidence                       888988864 110                                                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCC
Q 003191          442 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPP  521 (840)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  521 (840)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (310)
T 3vo2_A          138 --------------------------------------------------------------------------------  137 (310)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCceeeeeccCcCCCCcC-ccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecC
Q 003191          522 QRPPPSRHPLLPPTKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK  600 (840)
Q Consensus       522 ~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~-~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~  600 (840)
                                  |+  +|.|+||||.+... ...+++++|||||+||||+++++++++.+..... ...+++.|+|++|+
T Consensus       138 ------------Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v~L~~g~r~  202 (310)
T 3vo2_A          138 ------------GA--DVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDY-KFSGLAWLFLGVPT  202 (310)
T ss_dssp             ------------TC--EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTC-CCCSEEEEEEEESS
T ss_pred             ------------CC--EEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccc-cCCCcEEEEEEecC
Confidence                        12  57789999986542 2467899999999999999999999986532211 12468999999999


Q ss_pred             cchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCCC
Q 003191          601 SNELSLLSNFYKESICPFFSDKLNLETFIYVTRETE  636 (840)
Q Consensus       601 ~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~~  636 (840)
                      .+++.+. ++++++.   .....++++++++|++.+
T Consensus       203 ~~d~~~~-~el~~l~---~~~~~~~~v~~~~sr~~~  234 (310)
T 3vo2_A          203 SDSLLYK-EELEKMK---EMAPDNFRLDFAVSREQT  234 (310)
T ss_dssp             GGGCCSH-HHHHHHH---HHCTTTEEEEEEETTTCB
T ss_pred             hhhcccH-HHHHHHH---HhCCCCEEEEEEECCCCC
Confidence            9987544 4455543   112247899999998643

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=99.90  E-value=1.3e-22  Score=210.19  Aligned_cols=170  Identities=16%  Similarity=0.213  Sum_probs=130.8

Q ss_pred             cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  378 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk  378 (840)
                      ..+++.+++.+++++.++++..+.   ...++||||++|+++..+..++||||++|.+.+ ++.++|+||..  |.+|+.
T Consensus        12 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~~~~G~~S~~   90 (243)
T 2eix_A           12 KKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKVYEKGQMSQY   90 (243)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCTTCHHHHH
T ss_pred             EEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEEcCCCCcchH
Confidence            467888999999999888887653   467999999999998555678999999999854 57999999997  788987


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  458 (840)
Q Consensus       379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (840)
                      |.+ +  +                                                                        
T Consensus        91 l~~-l--~------------------------------------------------------------------------   95 (243)
T 2eix_A           91 IDH-L--N------------------------------------------------------------------------   95 (243)
T ss_dssp             HHT-C--C------------------------------------------------------------------------
T ss_pred             hhc-C--C------------------------------------------------------------------------
Confidence            742 1  0                                                                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191          459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  538 (840)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~  538 (840)
                                                                                                +|+  +
T Consensus        96 --------------------------------------------------------------------------~Gd--~   99 (243)
T 2eix_A           96 --------------------------------------------------------------------------PGD--F   99 (243)
T ss_dssp             --------------------------------------------------------------------------TTC--E
T ss_pred             --------------------------------------------------------------------------CCC--E
Confidence                                                                                      013  5


Q ss_pred             eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCC
Q 003191          539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF  618 (840)
Q Consensus       539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~  618 (840)
                      +.|+||||.+..+...+++++|||||+||||++++++++.++..     ..++++|+|++|+.+++. +.++++++.   
T Consensus       100 v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~-----~~~~v~l~~~~r~~~~~~-~~~el~~l~---  170 (243)
T 2eix_A          100 LQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK-----EKTIINLIFANVNEDDIL-LRTELDDMA---  170 (243)
T ss_dssp             EEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT-----CCCEEEEEEEEEEGGGCT-THHHHHHHH---
T ss_pred             EEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC-----CCcEEEEEEEcCCHHHhh-HHHHHHHHH---
Confidence            78999999975443457899999999999999999999986421     235899999999999984 445555543   


Q ss_pred             CCCCCceEEEEEEeCCC
Q 003191          619 FSDKLNLETFIYVTRET  635 (840)
Q Consensus       619 ~~~~~~l~I~iyVTr~~  635 (840)
                       .+..+++++..+++++
T Consensus       171 -~~~~~~~~~~~~s~~~  186 (243)
T 2eix_A          171 -KKYSNFKVYYVLNNPP  186 (243)
T ss_dssp             -HHCTTEEEEEEEEECC
T ss_pred             -HHCCCeEEEEEeCCCC
Confidence             1123688888887753

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=99.90  E-value=1.1e-22  Score=216.10  Aligned_cols=87  Identities=18%  Similarity=0.337  Sum_probs=66.9

Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  617 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~  617 (840)
                      ++.|+||||.+... ...++++|||||+||||+++++++++++..     ..++++|+|++|+.+++. +.++++++.  
T Consensus       140 ~v~v~gP~G~f~~~-~~~~~~vliagGtGitP~~s~l~~~~~~~~-----~~~~v~l~~~~r~~~d~~-~~~el~~l~--  210 (290)
T 2r6h_A          140 KVMMSGPYGDFHIQ-DTDAEMLYIGGGAGMAPLRAQILHLFRTLK-----TGRKVSYWYGARSKNEIF-YEEDFREIE--  210 (290)
T ss_dssp             EEEEEEEECCCCCC-SSSCEEEEEEEGGGHHHHHHHHHHHHHTSC-----CCSCEEEEEEESSGGGCC-SHHHHHHHH--
T ss_pred             EEEEEecccCCcCC-CCCCeEEEEECccCHHHHHHHHHHHHHhcC-----CCCcEEEEEEcCCHHHHH-HHHHHHHHH--
Confidence            57889999998654 568899999999999999999999887532     135899999999999884 444455542  


Q ss_pred             CCCCCCceEEEEEEeCCC
Q 003191          618 FFSDKLNLETFIYVTRET  635 (840)
Q Consensus       618 ~~~~~~~l~I~iyVTr~~  635 (840)
                        ....+++++++++++.
T Consensus       211 --~~~~~~~~~~~~s~~~  226 (290)
T 2r6h_A          211 --REFPNFKFHIALSDPQ  226 (290)
T ss_dssp             --HHCTTEEEEEEESSCC
T ss_pred             --HhCCCeEEEEEEccCC
Confidence              1224588888888753

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=99.89  E-value=2.9e-23  Score=225.32  Aligned_cols=94  Identities=18%  Similarity=0.193  Sum_probs=69.4

Q ss_pred             eeeeccCcCCCCcCcc---CCceEEEEEcCCCchhhHHHHHHHHHhhcc----CCCCCCceEEEEEeecCcchHHHHHHH
Q 003191          538 TASVEGPYGHEVPYHL---MYENLILVAGGIGISPFLAILSDILHRINE----GKSCLPRNVLIVWAVKKSNELSLLSNF  610 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~---~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~----~~~~~~~kV~LVWavR~~~dl~wl~~~  610 (840)
                      +|.|+||||.+..+..   ..++++|||||+||||++|++++++.+...    ......++++|+|++|+.+++ ++.++
T Consensus       150 ~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~-~~~~e  228 (316)
T 3jqq_A          150 DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSI-LYLNE  228 (316)
T ss_dssp             EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGC-TTHHH
T ss_pred             EEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHh-hcHHH
Confidence            5778999999754322   278999999999999999999999865321    001124689999999999998 55566


Q ss_pred             HHHccCCCCCCCCceEEEEEEeCCC
Q 003191          611 YKESICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       611 l~el~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      ++++..   ....++++++++|+++
T Consensus       229 L~~l~~---~~~~~~~~~~~~s~~~  250 (316)
T 3jqq_A          229 LEYFQK---MYPNNINIHYVFSYKQ  250 (316)
T ss_dssp             HHHHHH---HCTTTEEEEEEEGGGC
T ss_pred             HHHHHH---hCCCcEEEEEEECCCc
Confidence            666531   1224689999999874

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=99.89  E-value=3.6e-22  Score=222.57  Aligned_cols=169  Identities=14%  Similarity=0.211  Sum_probs=129.7

Q ss_pred             cccceEEEEEEEecCceEEEEEeCCC--Cc-----ccCCCcEEEEEEc----CCCCCceeceEeeeCCCCCCCeEEEEEE
Q 003191          302 SRRTVDVLSASCLPCGTVELVLSKPA--NL-----RYNALSFFFLQVR----ELSWLQWHPFSVSSSPLEGKYHSSVLIK  370 (840)
Q Consensus       302 ~~~~~~vasv~~Lp~~vvrLtI~~p~--~~-----~~~PGQhvfL~vP----~is~~q~HPFTIaSsp~~~~~~Lsf~IK  370 (840)
                      .++.+++++++.++++++++++..+.  .+     .|+||||+.|+++    +....++|||||+|.|++  +.++|+||
T Consensus       148 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~--~~~~i~Vk  225 (399)
T 4g1v_A          148 GWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTK--NGLRFAVK  225 (399)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCT--TCEEEEEE
T ss_pred             cceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCCC--CeEEEEEE
Confidence            34667889999999999999998653  23     7999999999984    334578999999999863  78999999


Q ss_pred             e--------cCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCC
Q 003191          371 V--------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPL  442 (840)
Q Consensus       371 ~--------~Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (840)
                      .        .|.+|+.|++.+..                                                         
T Consensus       226 ~~~~~~~~~~G~~S~~L~~~l~~---------------------------------------------------------  248 (399)
T 4g1v_A          226 MEAARENFPAGLVSEYLHKDAKV---------------------------------------------------------  248 (399)
T ss_dssp             CCCCBTTBCCCHHHHHHHHTCCT---------------------------------------------------------
T ss_pred             eccCCCCCCCCEehhHHHhCCCC---------------------------------------------------------
Confidence            9        56688888653211                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCC
Q 003191          443 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQ  522 (840)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  522 (840)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (399)
T 4g1v_A          249 --------------------------------------------------------------------------------  248 (399)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCceeeeeccCcCCCCcCcc----CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEee
Q 003191          523 RPPPSRHPLLPPTKITASVEGPYGHEVPYHL----MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV  598 (840)
Q Consensus       523 ~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~~----~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWav  598 (840)
                                 |+  ++.|+||||.+..+..    .+++++|||||+||||+++++++++.+.      ..++|+++|++
T Consensus       249 -----------Gd--~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~------~~~~v~l~~~~  309 (399)
T 4g1v_A          249 -----------GD--EIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCN------PNRPIYWIQSS  309 (399)
T ss_dssp             -----------TC--EEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHC------TTSCEEEEEEE
T ss_pred             -----------CC--EEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcC------CCCCEEEEEec
Confidence                       13  5889999999765433    5889999999999999999999998764      13589999999


Q ss_pred             cCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeC
Q 003191          599 KKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  633 (840)
Q Consensus       599 R~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr  633 (840)
                      |+.+++.+. +.++++.    .+..++++++++++
T Consensus       310 r~~~~~~~~-~el~~l~----~~~~~~~~~~~~s~  339 (399)
T 4g1v_A          310 YDEKTQAFK-KHVDELL----AECANVDKIIVHTD  339 (399)
T ss_dssp             SSSTTSTTH-HHHHHHH----TTCSSEEEEEEETT
T ss_pred             CCHHHhhhH-HHHHHHH----HhCCCcEEEEEEeC
Confidence            999988544 4455553    23345777766654

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=99.89  E-value=1.5e-22  Score=210.39  Aligned_cols=168  Identities=21%  Similarity=0.172  Sum_probs=127.6

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD  381 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~  381 (840)
                      ..+++.+++.+++++.++++. +..+.++||||++|+++..+..++|||||+|.+.+  +.++|+||..  |.+|+.|.+
T Consensus         5 ~~~~V~~~~~~~~~~~~l~l~-~~~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~~~G~~s~~l~~   81 (248)
T 1fdr_A            5 VTGKVTKVQNWTDALFSLTVH-APVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTVPDGKLSPRLAA   81 (248)
T ss_dssp             EEEEEEEEEECSSSEEEEEEE-CCCCCCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECCTTCSSHHHHHT
T ss_pred             EEEEEEEEEEcCCCEEEEEEe-CCCCCcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEeCCCchhhHHHh
Confidence            356788899999999999996 55678999999999998666778999999999864  7899999987  889988852


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  461 (840)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (840)
                       +.                                                                             
T Consensus        82 -l~-----------------------------------------------------------------------------   83 (248)
T 1fdr_A           82 -LK-----------------------------------------------------------------------------   83 (248)
T ss_dssp             -CC-----------------------------------------------------------------------------
T ss_pred             -CC-----------------------------------------------------------------------------
Confidence             10                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191          462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  541 (840)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V  541 (840)
                                                                                             +|+  ++.|
T Consensus        84 -----------------------------------------------------------------------~Gd--~v~v   90 (248)
T 1fdr_A           84 -----------------------------------------------------------------------PGD--EVQV   90 (248)
T ss_dssp             -----------------------------------------------------------------------TTC--EEEE
T ss_pred             -----------------------------------------------------------------------CcC--EEEE
Confidence                                                                                   013  4677


Q ss_pred             c-cCcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCC
Q 003191          542 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF  619 (840)
Q Consensus       542 e-GPYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~  619 (840)
                      + ||||.+..+.. .+++++|||||+||||++++++++..+.      ..++++|+|++|+.+++.+ .++++++.   .
T Consensus        91 ~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~-~~el~~l~---~  160 (248)
T 1fdr_A           91 VSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD------RFKNLVLVHAARYAADLSY-LPLMQELE---K  160 (248)
T ss_dssp             ESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT------TCSEEEEEEEESSGGGCTT-HHHHHHHH---H
T ss_pred             ecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC------CCCcEEEEEEcCCHHHhhH-HHHHHHHH---H
Confidence            8 99999653322 3789999999999999999999975432      2368999999999999844 44445542   1


Q ss_pred             CCCCceEEEEEEeCCC
Q 003191          620 SDKLNLETFIYVTRET  635 (840)
Q Consensus       620 ~~~~~l~I~iyVTr~~  635 (840)
                      ....+++++.++|+++
T Consensus       161 ~~~~~~~~~~~~s~~~  176 (248)
T 1fdr_A          161 RYEGKLRIQTVVSRET  176 (248)
T ss_dssp             HTTTSEEEEEEESSSC
T ss_pred             hCcCcEEEEEEEecCC
Confidence            1234688888888764

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.89  E-value=1.8e-22  Score=219.95  Aligned_cols=166  Identities=17%  Similarity=0.223  Sum_probs=130.8

Q ss_pred             cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  378 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk  378 (840)
                      ...++.+++.+.+++.++++..+.   .+.|+||||++|++|..  .++|||||+|.+.  ++.++|+||..  |.+|+.
T Consensus       109 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~--~~~l~~~vk~~~~G~~S~~  184 (338)
T 1krh_A          109 FEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGT--TETRSYSFSSQPG--NRLTGFVVRNVPQGKMSEY  184 (338)
T ss_dssp             EEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTS--SCEEEEECCSCTT--CSEEEEEEECCTTCHHHHH
T ss_pred             EEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCCC--CccccccccCCCC--CCeEEEEEEEcCCCCchhh
Confidence            456888899999999999998765   47899999999999853  5789999999986  48999999998  889998


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          379 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ  458 (840)
Q Consensus       379 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (840)
                      |++.+..                                                                         
T Consensus       185 L~~~l~~-------------------------------------------------------------------------  191 (338)
T 1krh_A          185 LSVQAKA-------------------------------------------------------------------------  191 (338)
T ss_dssp             HHTTCCT-------------------------------------------------------------------------
T ss_pred             HhhccCC-------------------------------------------------------------------------
Confidence            8643210                                                                         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 003191          459 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT  538 (840)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~  538 (840)
                                                                                                 |+  +
T Consensus       192 ---------------------------------------------------------------------------Gd--~  194 (338)
T 1krh_A          192 ---------------------------------------------------------------------------GD--K  194 (338)
T ss_dssp             ---------------------------------------------------------------------------TC--E
T ss_pred             ---------------------------------------------------------------------------CC--E
Confidence                                                                                       13  5


Q ss_pred             eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCC
Q 003191          539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF  618 (840)
Q Consensus       539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~  618 (840)
                      +.|+||||.+... ...++++|||||+||||++++++++..+.      ..++++|+|++|+.+|+.+ .++++++.   
T Consensus       195 v~v~gP~G~f~~~-~~~~~~vliagGtGiaP~~s~l~~l~~~~------~~~~v~l~~~~r~~~d~~~-~~el~~l~---  263 (338)
T 1krh_A          195 MSFTGPFGSFYLR-DVKRPVLMLAGGTGIAPFLSMLQVLEQKG------SEHPVRLVFGVTQDCDLVA-LEQLDALQ---  263 (338)
T ss_dssp             EEEEEEECSCSCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHHC------CSSCEEEEEEESSGGGCCC-HHHHHHHH---
T ss_pred             EEEECCccceEeC-CCCceEEEEEccccHhHHHHHHHHHHHcC------CCCeEEEEEEeCCHHHhhh-HHHHHHHH---
Confidence            7899999997654 23589999999999999999999998753      1357999999999999844 44444542   


Q ss_pred             CCCCCceEEEEEEeCCC
Q 003191          619 FSDKLNLETFIYVTRET  635 (840)
Q Consensus       619 ~~~~~~l~I~iyVTr~~  635 (840)
                       .+..+++++.++++++
T Consensus       264 -~~~~~~~~~~~~s~~~  279 (338)
T 1krh_A          264 -QKLPWFEYRTVVAHAE  279 (338)
T ss_dssp             -HHCTTEEEEEEETTCC
T ss_pred             -HhCCCeEEEEEEecCC
Confidence             1234688888888754

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=99.89  E-value=3.1e-23  Score=204.95  Aligned_cols=183  Identities=22%  Similarity=0.421  Sum_probs=124.6

Q ss_pred             eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccC-CCCCCceEEEEEeecCcchHHHHHHHHHHccCC
Q 003191          539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEG-KSCLPRNVLIVWAVKKSNELSLLSNFYKESICP  617 (840)
Q Consensus       539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~-~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~  617 (840)
                      |.|+||||.+..+...+++++|||||+||||+++++++++++.+.+ .....++|+|+|++|+.+++.|+.++++++...
T Consensus         1 v~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~   80 (186)
T 3a1f_A            1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQ   80 (186)
T ss_dssp             CCTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHH
T ss_pred             CeEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHH
Confidence            4689999997654467899999999999999999999998764211 112357899999999999999888888776411


Q ss_pred             C--CCCCCceEEEEEEeCCCCCCCcccccccccccccCCCCCCCceeEEecCCchhHHHHHHHHHHHHHHHHHHhhheee
Q 003191          618 F--FSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILY  695 (840)
Q Consensus       618 ~--~~~~~~l~I~iyVTr~~~~~~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (840)
                      .  .....++++++|+|++.+.+.. .    .                                               |
T Consensus        81 ~~~~~~~~~~~~~~~~t~~~~~~~~-~----~-----------------------------------------------~  108 (186)
T 3a1f_A           81 MQERNNAGFLSYNIYLTGWDESQAN-H----F-----------------------------------------------A  108 (186)
T ss_dssp             HHHTTCTTSEEEEEEETTC-------------------------------------------------------------
T ss_pred             HhhccCCCeEEEEEEEcCCCCCccc-c----e-----------------------------------------------e
Confidence            0  0013478999999986432100 0    0                                               0


Q ss_pred             eCCCCCcchhHHHHHHHHHhhceeeeccceeeeeehhhhhhccccccCCCCccccccccccccccccccccccCcccccc
Q 003191          696 VNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNI  775 (840)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~W~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  775 (840)
                                                      +-   |+..        .+..                  .++  ..++
T Consensus       109 --------------------------------~~---~~~~--------~~~~------------------~g~--~~~~  125 (186)
T 3a1f_A          109 --------------------------------VH---HDEE--------KDVI------------------TGL--KQKT  125 (186)
T ss_dssp             -----------------------------------------------------------------------------CCE
T ss_pred             --------------------------------ec---cccc--------cccC------------------CCC--cccc
Confidence                                            00   0000        0000                  111  1245


Q ss_pred             ccCCCCCHHHHHHhhcccCCCceEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEeccc
Q 003191          776 LYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF  838 (840)
Q Consensus       776 hyggRPdl~~I~~~~~~~~~~~~VGV~vCGP~~M~~~Va~~c~s~~~~~~~~~~~f~fhs~sF  838 (840)
                      ++ ||||++.+++++.+....+++.|++|||++|+++|++.|++.... ..++..++||.|+|
T Consensus       126 ~~-gR~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~~~v~~~l~~~g~~-~~~~~~~~~~~E~F  186 (186)
T 3a1f_A          126 LY-GRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSES-GPRGVHFIFNKENF  186 (186)
T ss_dssp             EE-SCCCHHHHHHHHHHHSTTCEEEEEEESCHHHHHHHHHHHHHTCCC-STTCCEEEEECCCC
T ss_pred             cc-CCCCHHHHHHHHHHhCCCCcEEEEEeCCHHHHHHHHHHHHHhhcc-CCCCCEEEEEeccC
Confidence            66 899999999887654444579999999999999999999986542 12345699999998

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=99.88  E-value=9.1e-22  Score=206.00  Aligned_cols=171  Identities=24%  Similarity=0.281  Sum_probs=130.3

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD  381 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~  381 (840)
                      ..+++.+++.+++++.++++..+..+.++||||++|+++..+..++|||||+|.+.+  +.++|+||..  |.+|+.|.+
T Consensus         4 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~~~~G~~s~~l~~   81 (257)
T 2qdx_A            4 YTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKVPDGPLTSRLQH   81 (257)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECCTTCTTHHHHTT
T ss_pred             EEEEEEEEEEcCCCeEEEEEeCCCCCccCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEEeCCCcchhHHHh
Confidence            456788899999999999999877788999999999998666678999999999863  7899999987  888988731


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  461 (840)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (840)
                       +  +                                                                           
T Consensus        82 -l--~---------------------------------------------------------------------------   83 (257)
T 2qdx_A           82 -L--K---------------------------------------------------------------------------   83 (257)
T ss_dssp             -C--C---------------------------------------------------------------------------
T ss_pred             -C--C---------------------------------------------------------------------------
Confidence             1  0                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191          462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  541 (840)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V  541 (840)
                                                                                             +|+  ++.|
T Consensus        84 -----------------------------------------------------------------------~Gd--~v~v   90 (257)
T 2qdx_A           84 -----------------------------------------------------------------------EGD--ELMV   90 (257)
T ss_dssp             -----------------------------------------------------------------------TTC--EEEE
T ss_pred             -----------------------------------------------------------------------CCC--EEEE
Confidence                                                                                   013  4677


Q ss_pred             c-cCcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHH-HccCCC
Q 003191          542 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK-ESICPF  618 (840)
Q Consensus       542 e-GPYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~-el~~~~  618 (840)
                      . ||||.+..+.. .+++++|||||+||||++++++++..+..      .++++|+|++|+.+++.+. ++++ ++....
T Consensus        91 ~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~-~el~~~l~~~~  163 (257)
T 2qdx_A           91 SRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER------YEKVILVHGVRWVSELAYA-DFITKVLPEHE  163 (257)
T ss_dssp             CSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH------CSEEEEEEEESSGGGCTTH-HHHHTTGGGCT
T ss_pred             ecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC------CCeEEEEEEcCCHHHhHhH-HHHHHHHHhch
Confidence            8 99999754322 37899999999999999999999876531      2589999999999998544 4455 442100


Q ss_pred             CC-C--CCceEEEEEEeCC
Q 003191          619 FS-D--KLNLETFIYVTRE  634 (840)
Q Consensus       619 ~~-~--~~~l~I~iyVTr~  634 (840)
                      .. +  ..+++++..+|++
T Consensus       164 ~~~~~~~~~~~~~~~~s~~  182 (257)
T 2qdx_A          164 YFGDQVKEKLIYYPLVTRE  182 (257)
T ss_dssp             TTHHHHHHHEEEEEEESSS
T ss_pred             hhhccCCCcEEEEEEecCC
Confidence            00 0  2467787778775

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.87  E-value=4.8e-21  Score=207.89  Aligned_cols=148  Identities=16%  Similarity=0.198  Sum_probs=118.6

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--Cc-hhH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GE-WTE  377 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg-~Tk  377 (840)
                      ...++.+++.+.++++++++..+..   ..|+||||++|++|..   ++|||||+|.+.+ ++.++|.||..  |. +|+
T Consensus         9 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g---~~R~ySi~s~~~~-~~~l~i~Vk~~~~G~g~S~   84 (321)
T 2pia_A            9 LRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNG---SRRTYSLCNDSQE-RNRYVIAVKRDSNGRGGSI   84 (321)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTS---CEEEEECCSCTTC-CSEEEEEEECCTTSCSHHH
T ss_pred             EEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCCC---CcEEEEeCCCCCC-CCeEEEEEEEecCCcchhH
Confidence            4568889999999999999997653   3789999999999842   8899999999864 57899999986  54 899


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          378 NLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPL  457 (840)
Q Consensus       378 kL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (840)
                      .|++.+..                                                                        
T Consensus        85 ~L~~~l~~------------------------------------------------------------------------   92 (321)
T 2pia_A           85 SFIDDTSE------------------------------------------------------------------------   92 (321)
T ss_dssp             HHHHSCCT------------------------------------------------------------------------
T ss_pred             HHHhcCCC------------------------------------------------------------------------
Confidence            88753311                                                                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q 003191          458 QEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKI  537 (840)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~  537 (840)
                                                                                                  |+  
T Consensus        93 ----------------------------------------------------------------------------Gd--   94 (321)
T 2pia_A           93 ----------------------------------------------------------------------------GD--   94 (321)
T ss_dssp             ----------------------------------------------------------------------------TC--
T ss_pred             ----------------------------------------------------------------------------CC--
Confidence                                                                                        12  


Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  614 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el  614 (840)
                      ++.|+||||.+..+ ..+++++|||||+||||++++++++..+.       .++++|+|++|+.+++.+. ++++++
T Consensus        95 ~v~v~gP~g~f~l~-~~~~~~vliagG~GItP~~s~l~~l~~~~-------~~~v~l~~~~r~~~~~~~~-~el~~l  162 (321)
T 2pia_A           95 AVEVSLPRNEFPLD-KRAKSFILVAGGIGITPMLSMARQLRAEG-------LRSFRLYYLTRDPEGTAFF-DELTSD  162 (321)
T ss_dssp             EEEECCCBCCSCCC-TTCSEEEEEEEGGGHHHHHHHHHHHHHHC-------SSEEEEEEEESCGGGCTTH-HHHHST
T ss_pred             EEEEeCCccccccC-CCCCCEEEEEecccHhHHHHHHHHHHHcC-------CCcEEEEEEECChhhhHHH-HHHhcC
Confidence            57899999987544 34789999999999999999999998753       1589999999999998554 444443

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=99.87  E-value=3.2e-21  Score=214.93  Aligned_cols=169  Identities=18%  Similarity=0.259  Sum_probs=130.8

Q ss_pred             ccceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcC-CC-CCceeceEeeeCCCCCCCeEEEEEEec-----
Q 003191          303 RRTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRE-LS-WLQWHPFSVSSSPLEGKYHSSVLIKVL-----  372 (840)
Q Consensus       303 ~~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~-is-~~q~HPFTIaSsp~~~~~~Lsf~IK~~-----  372 (840)
                      ++.+++.+++.+++++.++++..+.   ...++||||+.|+++. .. ..++|||||+|.|+  ++.++|+||..     
T Consensus       154 ~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~~~~~  231 (403)
T 1cqx_A          154 WRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKREGGGPQ  231 (403)
T ss_dssp             CEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECCCBTTB
T ss_pred             ceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEECCCCCC
Confidence            3567889999999999999998653   2479999999999983 32 36899999999885  47899999997     


Q ss_pred             --CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCC
Q 003191          373 --GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA  450 (840)
Q Consensus       373 --Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (840)
                        |.+|+.|++.+..                                                                 
T Consensus       232 ~~G~~S~~L~~~l~~-----------------------------------------------------------------  246 (403)
T 1cqx_A          232 PPGYVSNLLHDHVNV-----------------------------------------------------------------  246 (403)
T ss_dssp             CCCHHHHHHHHHCCT-----------------------------------------------------------------
T ss_pred             CCCeehHHHhhCCCC-----------------------------------------------------------------
Confidence              6688888764311                                                                 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          451 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP  530 (840)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  530 (840)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (403)
T 1cqx_A          247 --------------------------------------------------------------------------------  246 (403)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHH
Q 003191          531 LLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  610 (840)
Q Consensus       531 ~~pg~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~  610 (840)
                         |+  ++.|.||||.+..+....++++|||||+||||++++++++.. .      ..++|+|+|++|+.+++.+ .++
T Consensus       247 ---Gd--~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~------~~~~v~l~~~~r~~~~~~~-~~e  313 (403)
T 1cqx_A          247 ---GD--QVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A------PPRQVVFVHGARNSAVHAM-RDR  313 (403)
T ss_dssp             ---TC--EEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S------SCCCEEEEEEESCSSSCHH-HHH
T ss_pred             ---CC--EEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C------CCCcEEEEEEeCChhhCcH-HHH
Confidence               12  578999999875433467899999999999999999999975 1      1358999999999999854 555


Q ss_pred             HHHccCCCCCCCCceEEEEEEeCCC
Q 003191          611 YKESICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       611 l~el~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      ++++.    .+..+++++++++++.
T Consensus       314 l~~l~----~~~~~~~~~~~~s~~~  334 (403)
T 1cqx_A          314 LREAA----KTYENLDLFVFYDQPL  334 (403)
T ss_dssp             HHHHH----HHCTTEEEEEEESSCC
T ss_pred             HHHHH----HhCCCcEEEEEECCCC
Confidence            55553    1234588888887754

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=99.87  E-value=1.4e-21  Score=206.42  Aligned_cols=76  Identities=20%  Similarity=0.246  Sum_probs=64.0

Q ss_pred             cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--------
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--------  372 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--------  372 (840)
                      ..+++.+++.+++++.++++..+.   ...++||||++|+++..+.+++|||||+|++.+ ++.++|+||..        
T Consensus        17 ~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~   95 (275)
T 1umk_A           17 YPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKVYFKDTHPKF   95 (275)
T ss_dssp             EEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEECCCSSSBTTB
T ss_pred             EEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeCCcEEEeccccCCccCC-CCeEEEEEEEeccCccccc
Confidence            456888999999999888888653   367999999999998666778999999998854 58999999987        


Q ss_pred             ---CchhHHHH
Q 003191          373 ---GEWTENLR  380 (840)
Q Consensus       373 ---Gg~TkkL~  380 (840)
                         |.+|+.|.
T Consensus        96 ~~~G~~S~~L~  106 (275)
T 1umk_A           96 PAGGKMSQYLE  106 (275)
T ss_dssp             TTCCHHHHHHH
T ss_pred             CCCChhHHHHh
Confidence               88888884

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=99.87  E-value=1.1e-21  Score=218.04  Aligned_cols=170  Identities=12%  Similarity=0.127  Sum_probs=133.0

Q ss_pred             ccceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCC--CCceeceEeeeCCCCCCCeEEEEEEec--Cch
Q 003191          303 RRTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW  375 (840)
Q Consensus       303 ~~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is--~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~  375 (840)
                      ++.+++++++.+++++.++++..+.   ...|+||||+.|+++..+  ..++|||||+|.|.  ++.++|+||..  |.+
T Consensus       152 ~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~~G~~  229 (396)
T 1gvh_A          152 TRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKREEGGQV  229 (396)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECCTTCHH
T ss_pred             cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEcCCCcc
Confidence            3567889999999999999998653   257999999999998433  36899999999986  47899999998  889


Q ss_pred             hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003191          376 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP  455 (840)
Q Consensus       376 TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (840)
                      |+.|++.+..                                                                      
T Consensus       230 S~~L~~~l~~----------------------------------------------------------------------  239 (396)
T 1gvh_A          230 SNWLHNHANV----------------------------------------------------------------------  239 (396)
T ss_dssp             HHHHHHTCCT----------------------------------------------------------------------
T ss_pred             hHHHHhcCCC----------------------------------------------------------------------
Confidence            9998764211                                                                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          456 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT  535 (840)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~  535 (840)
                                                                                                    |+
T Consensus       240 ------------------------------------------------------------------------------Gd  241 (396)
T 1gvh_A          240 ------------------------------------------------------------------------------GD  241 (396)
T ss_dssp             ------------------------------------------------------------------------------TC
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          12


Q ss_pred             ceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc
Q 003191          536 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  615 (840)
Q Consensus       536 ~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~  615 (840)
                        ++.|.||||.+..+....++++|||||+||||++++++++..+.      ..++++|+|++|+.+++.+ .++++++.
T Consensus       242 --~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~------~~~~v~l~~~~r~~~~~~~-~~el~~l~  312 (396)
T 1gvh_A          242 --VVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG------HTAQVNWFHAAENGDVHAF-ADEVKELG  312 (396)
T ss_dssp             --EEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT------CCSCEEEEEEESCTTTCCS-HHHHHHHH
T ss_pred             --EEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcC------CCCcEEEEEEeCCHHHhhh-HHHHHHHH
Confidence              57899999987543346789999999999999999999998753      1358999999999999854 45555543


Q ss_pred             CCCCCCCCceEEEEEEeCCC
Q 003191          616 CPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~~  635 (840)
                          .+..+++++++++++.
T Consensus       313 ----~~~~~~~~~~~~s~~~  328 (396)
T 1gvh_A          313 ----QSLPRFTAHTWYRQPS  328 (396)
T ss_dssp             ----HTSSSEEEEEEESSCC
T ss_pred             ----HHCCCeEEEEEECCCC
Confidence                1234688888887653

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=99.87  E-value=2.3e-21  Score=205.22  Aligned_cols=170  Identities=19%  Similarity=0.215  Sum_probs=129.8

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCC-CCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD  381 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~i-s~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~  381 (840)
                      .+++.+++.+++++.++++..+..+.++||||++|+++.. +..++|||||+|.+.+  +.++|+||..  |.+|+.|.+
T Consensus        18 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~~~~G~~s~~l~~   95 (272)
T 2bgi_A           18 AQTVTSVRHWTDTLFSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIKVPDGPLTSRLQH   95 (272)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEECCTTCTTHHHHTT
T ss_pred             EEEEEEEEEcCCCEEEEEEeCCCCCccCCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEEccCCCchhHHHh
Confidence            5678889999999999999987778899999999999854 5678999999999863  7899999987  889988741


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  461 (840)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (840)
                       +  +                                                                           
T Consensus        96 -l--~---------------------------------------------------------------------------   97 (272)
T 2bgi_A           96 -I--K---------------------------------------------------------------------------   97 (272)
T ss_dssp             -C--C---------------------------------------------------------------------------
T ss_pred             -C--C---------------------------------------------------------------------------
Confidence             1  0                                                                           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191          462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  541 (840)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V  541 (840)
                                                                                             +|+  ++.|
T Consensus        98 -----------------------------------------------------------------------~Gd--~v~v  104 (272)
T 2bgi_A           98 -----------------------------------------------------------------------VGE--QIIL  104 (272)
T ss_dssp             -----------------------------------------------------------------------TTC--EEEE
T ss_pred             -----------------------------------------------------------------------CCC--EEEE
Confidence                                                                                   013  5777


Q ss_pred             c-cCcCCCCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHH-HccCC-
Q 003191          542 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK-ESICP-  617 (840)
Q Consensus       542 e-GPYG~~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~-el~~~-  617 (840)
                      + ||||.+..+.. .+++++|||||+||||++++++++..+.      ..++++|+|++|+.+++.+. ++++ ++... 
T Consensus       105 ~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~-~el~~~l~~~~  177 (272)
T 2bgi_A          105 RPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE------KFDEVIMMHACRTVAELEYG-RQLVEALQEDP  177 (272)
T ss_dssp             EEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT------SCSEEEEEEEESSSGGGHHH-HHHHHHHHHCT
T ss_pred             eeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC------CCCcEEEEEEeCCHHHhhHH-HHHHHHHHhcc
Confidence            8 99999754322 3789999999999999999999886542      13589999999999998544 4455 54310 


Q ss_pred             CCCC--CCceEEEEEEeCC
Q 003191          618 FFSD--KLNLETFIYVTRE  634 (840)
Q Consensus       618 ~~~~--~~~l~I~iyVTr~  634 (840)
                      ...+  ..+++++..+|++
T Consensus       178 ~~~~~~~~~~~~~~~~s~~  196 (272)
T 2bgi_A          178 LIGELVEGKLKYYPTTTRE  196 (272)
T ss_dssp             TTTTTSTTTEEEEEEESSS
T ss_pred             hhhcccCCcEEEEEEecCC
Confidence            0001  2568888888876

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=99.87  E-value=5.9e-21  Score=206.08  Aligned_cols=175  Identities=19%  Similarity=0.202  Sum_probs=130.3

Q ss_pred             ceEEEEEEEecC-----ceEEEEEeCCCCcccCCCcEEEEEEcCC----CCCceeceEeeeCCCC---CCCeEEEEEEec
Q 003191          305 TVDVLSASCLPC-----GTVELVLSKPANLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLE---GKYHSSVLIKVL  372 (840)
Q Consensus       305 ~~~vasv~~Lp~-----~vvrLtI~~p~~~~~~PGQhvfL~vP~i----s~~q~HPFTIaSsp~~---~~~~Lsf~IK~~  372 (840)
                      ..++.+++.+.+     ++.++++..+..+.|+||||++|+++..    ..+++|||||+|++.+   +++.++|+||..
T Consensus        39 ~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~  118 (314)
T 1fnb_A           39 VGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRL  118 (314)
T ss_dssp             EEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECC
T ss_pred             EEEEEEEEEecCCCCCCcEEEEEEecCCCCCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEE
Confidence            457888888876     8999999987668899999999999854    2368899999999853   247899999963


Q ss_pred             -----------CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCC
Q 003191          373 -----------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPP  441 (840)
Q Consensus       373 -----------Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (840)
                                 |.+|+.|.+ +..                                                        
T Consensus       119 ~y~~~~g~~~~G~~S~~L~~-l~~--------------------------------------------------------  141 (314)
T 1fnb_A          119 IYTNDAGETIKGVCSNFLCD-LKP--------------------------------------------------------  141 (314)
T ss_dssp             EEECTTSCEEECHHHHHHHH-CCT--------------------------------------------------------
T ss_pred             EeccCCCCcCCCchhhHhhc-CCC--------------------------------------------------------
Confidence                       778988875 210                                                        


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCC
Q 003191          442 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPP  521 (840)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  521 (840)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (314)
T 1fnb_A          142 --------------------------------------------------------------------------------  141 (314)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCceeeeeccCcCCCCcCc-cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecC
Q 003191          522 QRPPPSRHPLLPPTKITASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK  600 (840)
Q Consensus       522 ~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~~-~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~  600 (840)
                                  |+  +|.|+||||.+.... ...++++|||||+||||+++++++++.+...+. ...++++|+|++|+
T Consensus       142 ------------Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v~L~~g~R~  206 (314)
T 1fnb_A          142 ------------GA--EVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPT  206 (314)
T ss_dssp             ------------TC--EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTB-CCCSEEEEEEEESS
T ss_pred             ------------CC--EEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccc-cCCCCEEEEEecCC
Confidence                        12  578999999875322 347899999999999999999999986532111 12358999999999


Q ss_pred             cchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC
Q 003191          601 SNELSLLSNFYKESICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       601 ~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      .+++.+ .++++++..   ....+++++.++|+++
T Consensus       207 ~~d~~~-~~el~~l~~---~~~~~~~~~~~~s~~~  237 (314)
T 1fnb_A          207 SSSLLY-KEEFEKMKE---KAPDNFRLDFAVSREQ  237 (314)
T ss_dssp             GGGCCS-HHHHHHHHH---HCTTTEEEEEEETTTC
T ss_pred             HHHhhh-HHHHHHHHH---hCCCcEEEEEEECCCC
Confidence            988844 444555431   1223688888888764

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=99.86  E-value=5.6e-21  Score=204.96  Aligned_cols=176  Identities=18%  Similarity=0.197  Sum_probs=129.0

Q ss_pred             ceEEEEEEEecC-----ceEEEEEeCCC-CcccCCCcEEEEEEcCC----CCCceeceEeeeCCCC---CCCeEEEEEEe
Q 003191          305 TVDVLSASCLPC-----GTVELVLSKPA-NLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLE---GKYHSSVLIKV  371 (840)
Q Consensus       305 ~~~vasv~~Lp~-----~vvrLtI~~p~-~~~~~PGQhvfL~vP~i----s~~q~HPFTIaSsp~~---~~~~Lsf~IK~  371 (840)
                      ..++.+.+.+.+     ++.++++..+. .+.|+||||++|+++..    ..+++|||||+|++.+   +++.++|+||.
T Consensus        23 ~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~Vk~  102 (304)
T 2bmw_A           23 IGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQ  102 (304)
T ss_dssp             EEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEEC
T ss_pred             EEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEEEE
Confidence            457788888887     89999998653 57899999999999854    2368899999998852   25789999997


Q ss_pred             ------------cCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCC
Q 003191          372 ------------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG  439 (840)
Q Consensus       372 ------------~Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (840)
                                  .|.+|+.|.+ +.                                                       
T Consensus       103 ~~y~~~~~~~~~~G~~S~~L~~-l~-------------------------------------------------------  126 (304)
T 2bmw_A          103 LEYKHPESGETVYGVCSTYLTH-IE-------------------------------------------------------  126 (304)
T ss_dssp             CEECSSSSSSCEECHHHHHHHT-CC-------------------------------------------------------
T ss_pred             EEeeccccCcCCCcchhhHHhc-CC-------------------------------------------------------
Confidence                        4668888754 10                                                       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCC
Q 003191          440 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGS  519 (840)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  519 (840)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (304)
T 2bmw_A          127 --------------------------------------------------------------------------------  126 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCceeeeeccCcCCCCcC-ccCCceEEEEEcCCCchhhHHHHHHHHHhhcc--CC-CCCCceEEEE
Q 003191          520 PPQRPPPSRHPLLPPTKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINE--GK-SCLPRNVLIV  595 (840)
Q Consensus       520 ~~~~~~~~~~~~~pg~~~~V~VeGPYG~~~~~-~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~--~~-~~~~~kV~LV  595 (840)
                                   +|+  ++.|+||||.+... ....++++|||||+||||+++++++++.+.+.  +. ....++++|+
T Consensus       127 -------------~Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~  191 (304)
T 2bmw_A          127 -------------PGS--EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLV  191 (304)
T ss_dssp             -------------TTC--EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEE
T ss_pred             -------------CCC--EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEE
Confidence                         012  57899999986532 23578999999999999999999999865311  00 0113579999


Q ss_pred             EeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC
Q 003191          596 WAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       596 WavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      |++|+.+++. +.++++++..   ....+++++.++|++.
T Consensus       192 ~g~r~~~d~~-~~~el~~~~~---~~~~~~~~~~~~s~~~  227 (304)
T 2bmw_A          192 FGVPTTPNIL-YKEELEEIQQ---KYPDNFRLTYAISREQ  227 (304)
T ss_dssp             EEESSGGGCT-THHHHHHHHH---HCTTTEEEEEEETTTC
T ss_pred             EEeCChHhcc-hHHHHHHHHH---hCCCcEEEEEEEcCCC
Confidence            9999998884 4455555431   1123688888888764

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=99.86  E-value=1.1e-20  Score=211.68  Aligned_cols=176  Identities=15%  Similarity=0.179  Sum_probs=130.6

Q ss_pred             cceEEEEEEEecC-----ceEEEEEeCCC-CcccCCCcEEEEEEcCC----CCCceeceEeeeCCCC---CCCeEEEEEE
Q 003191          304 RTVDVLSASCLPC-----GTVELVLSKPA-NLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLE---GKYHSSVLIK  370 (840)
Q Consensus       304 ~~~~vasv~~Lp~-----~vvrLtI~~p~-~~~~~PGQhvfL~vP~i----s~~q~HPFTIaSsp~~---~~~~Lsf~IK  370 (840)
                      ...++.+++.+.+     ++.++++..+. .+.|+||||++|+++..    ..+++|||||+|++.+   +++.++|+||
T Consensus       123 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk  202 (402)
T 2b5o_A          123 FLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVR  202 (402)
T ss_dssp             EEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEE
T ss_pred             EEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEE
Confidence            3567888888887     89999998765 47899999999998753    2368999999999863   2578999999


Q ss_pred             e------------cCchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCC
Q 003191          371 V------------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV  438 (840)
Q Consensus       371 ~------------~Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (840)
                      .            .|.+|+.|++ +.                                                      
T Consensus       203 ~~~y~~~~~~~~~~G~~S~~L~~-l~------------------------------------------------------  227 (402)
T 2b5o_A          203 QLEYQDPESGETVYGVCSTYLCN-LP------------------------------------------------------  227 (402)
T ss_dssp             CCEEECTTTCCEEECHHHHHHHT-CC------------------------------------------------------
T ss_pred             EeeecccccCcCCCCchhHHHhh-CC------------------------------------------------------
Confidence            8            4778888764 10                                                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCC
Q 003191          439 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQG  518 (840)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  518 (840)
                                                                                                      
T Consensus       228 --------------------------------------------------------------------------------  227 (402)
T 2b5o_A          228 --------------------------------------------------------------------------------  227 (402)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCC-CceeeeeccCcCCCCc-CccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEE
Q 003191          519 SPPQRPPPSRHPLLPP-TKITASVEGPYGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW  596 (840)
Q Consensus       519 ~~~~~~~~~~~~~~pg-~~~~V~VeGPYG~~~~-~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVW  596 (840)
                                    +| +  ++.|+||||.+.. +....++++|||||+||||+++++++++.+..++. ...++++|+|
T Consensus       228 --------------~G~d--~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~-~~~~~v~L~~  290 (402)
T 2b5o_A          228 --------------VGTD--DVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDY-KFKGKAWLIF  290 (402)
T ss_dssp             --------------TTCC--CEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSC-CCCSEEEEEE
T ss_pred             --------------CCCc--eEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccc-cccCCEEEEE
Confidence                          01 2  4778999998753 22357899999999999999999999986532111 1246899999


Q ss_pred             eecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC
Q 003191          597 AVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       597 avR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      ++|+.+|+. +.++++++..   ....++++++++++++
T Consensus       291 g~R~~~d~~-~~~eL~~l~~---~~~~~~~v~~~~S~~~  325 (402)
T 2b5o_A          291 GVPYTANIL-YKDDFEKMAA---ENPDNFRLTYAISREQ  325 (402)
T ss_dssp             EESSGGGCT-THHHHHHHHH---HCTTTEEEEEEETTTC
T ss_pred             ecCCHHHhH-HHHHHHHHHH---hCCCcEEEEEEECCCC
Confidence            999998874 4455555531   1223688888888764

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=99.84  E-value=5.4e-20  Score=193.64  Aligned_cols=149  Identities=19%  Similarity=0.250  Sum_probs=119.2

Q ss_pred             ceEEEEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEe--cCchhHHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV--LGEWTENLRD  381 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~--~Gg~TkkL~~  381 (840)
                      ..++.+++.+.+++.++++..+. ...++||||++|+++..+..++|||||+|.+.+ ++.++|+||.  .|..|+.|.+
T Consensus         7 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~~G~~S~~l~~   85 (262)
T 1ep3_B            7 MMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGDETTGTYKLSK   85 (262)
T ss_dssp             EEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCCTTSHHHHHHT
T ss_pred             ceEEEEEEEecCCEEEEEEEcCcccccCCCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEecCCchHHHHhc
Confidence            46788899999999999998765 357999999999998655688999999998854 5799999999  8999987741


Q ss_pred             HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          382 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG  461 (840)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (840)
                       ++                                                                             
T Consensus        86 -l~-----------------------------------------------------------------------------   87 (262)
T 1ep3_B           86 -LE-----------------------------------------------------------------------------   87 (262)
T ss_dssp             -CC-----------------------------------------------------------------------------
T ss_pred             -CC-----------------------------------------------------------------------------
Confidence             10                                                                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeee
Q 003191          462 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV  541 (840)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pg~~~~V~V  541 (840)
                                                                                             +|+  ++.|
T Consensus        88 -----------------------------------------------------------------------~Gd--~v~v   94 (262)
T 1ep3_B           88 -----------------------------------------------------------------------SGA--KVDV   94 (262)
T ss_dssp             -----------------------------------------------------------------------TTC--EEEE
T ss_pred             -----------------------------------------------------------------------CCC--EEEE
Confidence                                                                                   013  5789


Q ss_pred             ccCcCC-CCcCcc-CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191          542 EGPYGH-EVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  614 (840)
Q Consensus       542 eGPYG~-~~~~~~-~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el  614 (840)
                      +||||+ +..+.. ..++++|||||+||||++++++++..+.        ++++|+|++|+.+++.+. ++++++
T Consensus        95 ~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~--------~~v~l~~~~r~~~~~~~~-~el~~l  160 (262)
T 1ep3_B           95 MGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG--------CQMTILLGFASENVKILE-NEFSNL  160 (262)
T ss_dssp             EEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT--------CEEEEEEEESSGGGCCCH-HHHHTS
T ss_pred             EcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC--------CeEEEEEEcCCHHHhhhH-HHHhhh
Confidence            999998 543322 3789999999999999999999998642        479999999999998544 444443

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=99.83  E-value=1.1e-19  Score=196.11  Aligned_cols=90  Identities=22%  Similarity=0.424  Sum_probs=66.3

Q ss_pred             eeeeccCcCCCCcCc--cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHcc
Q 003191          538 TASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI  615 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~--~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~  615 (840)
                      ++.|+||||.+....  ...++++|||||+||||++++++++..+...   ...++++|+|++|+.+++. +.++++++.
T Consensus       146 ~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~~---~~~~~v~l~~g~r~~~d~~-~~~el~~l~  221 (314)
T 2rc5_A          146 EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLI---KFTGNITLVYGAPYSDELV-MMDYLKGLE  221 (314)
T ss_dssp             EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCSS---CBCSCEEEEEEESSGGGSC-SHHHHHHHH
T ss_pred             EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhccc---CCCCcEEEEEEeCCHHHHh-HHHHHHHHH
Confidence            578999999875422  3578999999999999999999999865311   1235799999999999874 445555543


Q ss_pred             CCCCCCCCceEEEEEEeCCC
Q 003191          616 CPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~~  635 (840)
                          .+..+++++.++|++.
T Consensus       222 ----~~~~~~~~~~~~s~~~  237 (314)
T 2rc5_A          222 ----SKHKNFKLITAISREE  237 (314)
T ss_dssp             ----HHHSSEEEEEEETTTC
T ss_pred             ----HhCCcEEEEEEECCCC
Confidence                1113688888888764

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=99.83  E-value=5.5e-20  Score=193.36  Aligned_cols=207  Identities=17%  Similarity=0.197  Sum_probs=145.4

Q ss_pred             cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--------
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--------  372 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--------  372 (840)
                      ..+++.+++.+.+++.++++..+.   .+.++||||++|+++..+..++|||||+|.+.+ ++.++|+||..        
T Consensus        13 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~   91 (270)
T 2cnd_A           13 IHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFKNEHPKF   91 (270)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCSSCBTTB
T ss_pred             EEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEeccCccccc
Confidence            456888899999999999998654   467999999999998666778999999998864 57999999974        


Q ss_pred             ---CchhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhcCCcccCCCCCCCCCCCCCCCC
Q 003191          373 ---GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG  449 (840)
Q Consensus       373 ---Gg~TkkL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (840)
                         |.+|+.|. .+..                                                                
T Consensus        92 ~~~G~~s~~l~-~l~~----------------------------------------------------------------  106 (270)
T 2cnd_A           92 PNGGLMTQYLD-SLPV----------------------------------------------------------------  106 (270)
T ss_dssp             TTCCHHHHHHH-HCCT----------------------------------------------------------------
T ss_pred             CCCCchhhHHh-cCCC----------------------------------------------------------------
Confidence               67888874 2110                                                                


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003191          450 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH  529 (840)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  529 (840)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (270)
T 2cnd_A          107 --------------------------------------------------------------------------------  106 (270)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCceeeeeccCcCCCCc--------C--ccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeec
Q 003191          530 PLLPPTKITASVEGPYGHEVP--------Y--HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVK  599 (840)
Q Consensus       530 ~~~pg~~~~V~VeGPYG~~~~--------~--~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR  599 (840)
                          |+  ++.|+||||.+..        +  ....++++|||||+||||+++++++++.+..+    ..++++|+|++|
T Consensus       107 ----Gd--~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~----~~~~v~l~~~~r  176 (270)
T 2cnd_A          107 ----GS--YIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPE----DHTEMHLVYANR  176 (270)
T ss_dssp             ----TC--EEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTT----CCCEEEEEEEES
T ss_pred             ----CC--EEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCCC----CCcEEEEEEEcC
Confidence                12  5788999997321        1  02478999999999999999999999865211    246899999999


Q ss_pred             CcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCCC---C-CCcccccccccccccCCCCCCCceeEEecCCch
Q 003191          600 KSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETE---P-PLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  670 (840)
Q Consensus       600 ~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~~---~-~~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~  670 (840)
                      +.+++.+. ++++++..   ....+++++..++++..   . ....+.+++.++....+...+....++|||...
T Consensus       177 ~~~d~~~~-~el~~l~~---~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp~~m  247 (270)
T 2cnd_A          177 TEDDILLR-DELDRWAA---EYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPM  247 (270)
T ss_dssp             CGGGCTTH-HHHHHHHH---HCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHH
T ss_pred             CHHHcchH-HHHHHHHH---HCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEEEEECCHHH
Confidence            99998544 44444431   12235788777776321   1 112344444433333444334566789999764

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=99.62  E-value=1.6e-14  Score=151.65  Aligned_cols=74  Identities=8%  Similarity=0.081  Sum_probs=57.5

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCC--c-ccCCCcEEEEEEcC-CCCCceeceEeeeCCCCCCCeEEEEEEec---Cchh
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPAN--L-RYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVL---GEWT  376 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~--~-~~~PGQhvfL~vP~-is~~q~HPFTIaSsp~~~~~~Lsf~IK~~---Gg~T  376 (840)
                      ...++.+++.+..++.++++..+..  + .++||||+-|.++. -....+++||+++.+.   +.+++.++..   |..|
T Consensus         9 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~~~~G~~S   85 (252)
T 2gpj_A            9 RELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLHDTDGPAS   85 (252)
T ss_dssp             EEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECCSSCCHHH
T ss_pred             EEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEeCCCCcHH
Confidence            4578889999999999999987642  3 47999999999984 3456889999999764   4666766655   6778


Q ss_pred             HHHH
Q 003191          377 ENLR  380 (840)
Q Consensus       377 kkL~  380 (840)
                      +.|.
T Consensus        86 ~~l~   89 (252)
T 2gpj_A           86 SWAK   89 (252)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7663

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=99.54  E-value=1e-14  Score=162.10  Aligned_cols=87  Identities=13%  Similarity=0.123  Sum_probs=62.0

Q ss_pred             eeeecc-CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHcc
Q 003191          538 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI  615 (840)
Q Consensus       538 ~V~VeG-PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~  615 (840)
                      +|.|.| |.|.+....+..++++|||||+||||++++++++..+..      ..++.|+|++|+. +|+ ++.++++++.
T Consensus       209 ~v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~------~~~~~L~~G~R~~~~d~-ly~~El~~~~  281 (374)
T 1ddg_A          209 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA------PGKNWLFFGNPHFTEDF-LYQVEWQRYV  281 (374)
T ss_dssp             EEEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC------CSCEEEEEEESCHHHHC-TTHHHHHHHH
T ss_pred             EEEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC------CCCEEEEEEeCCchhhh-hHHHHHHHHH
Confidence            467777 555654332456889999999999999999999986541      3579999999998 565 4555555543


Q ss_pred             CCCCCCCCceEEEEEEeCCC
Q 003191          616 CPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~~  635 (840)
                          .+...+++++.++|+.
T Consensus       282 ----~~~~~~~l~~a~Srd~  297 (374)
T 1ddg_A          282 ----KEGVLTRIDLAWSRDQ  297 (374)
T ss_dssp             ----HTTSCCEEEEEETTSS
T ss_pred             ----HhCCCcEEEEEEecCC
Confidence                1223457777787764

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=99.53  E-value=5e-14  Score=157.60  Aligned_cols=93  Identities=14%  Similarity=0.178  Sum_probs=67.2

Q ss_pred             CceeeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHH
Q 003191          535 TKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKE  613 (840)
Q Consensus       535 ~~~~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~e  613 (840)
                      +++.+.|+||+|.+....+...+++|||||+||||+++++++.....+.+.  ...++.|+|++|+. +|+ ++.+++++
T Consensus       220 d~v~v~v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~--~~~~v~L~~G~R~~~~d~-ly~~el~~  296 (393)
T 4dql_A          220 DTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQ--SLGEAHLYFGCRSPHEDY-LYQEELEN  296 (393)
T ss_dssp             CEEEEEEECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC--CCCCEEEEEEESCTTTCC-TTHHHHHH
T ss_pred             CEEEEEEEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCC--CCCCEEEEEEECCcchhh-HHHHHHHH
Confidence            556788999999876543456789999999999999999998643221221  23579999999995 565 45566666


Q ss_pred             ccCCCCCCCCceEEEEEEeCCC
Q 003191          614 SICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       614 l~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      +.     +...+++++.++|++
T Consensus       297 ~~-----~~~~l~l~~a~Sr~~  313 (393)
T 4dql_A          297 AQ-----SEGIITLHTAFSRMP  313 (393)
T ss_dssp             HH-----HTTSCEEEEEESSCT
T ss_pred             HH-----hCCCeEEEEEEeCCC
Confidence            53     224678888888753

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=99.39  E-value=1.2e-12  Score=148.11  Aligned_cols=92  Identities=16%  Similarity=0.137  Sum_probs=64.1

Q ss_pred             eeeecc-CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcc-hHHHHHHHHHHcc
Q 003191          538 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESI  615 (840)
Q Consensus       538 ~V~VeG-PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~-dl~wl~~~l~el~  615 (840)
                      +|.|.| |+|.+....+..++++|||||+||||+++++++++.+.+++ .....++.|+|++|+.+ |+ ++.++++++.
T Consensus       261 ~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~-ly~~El~~~~  338 (435)
T 1f20_A          261 VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDH-IYREETLQAK  338 (435)
T ss_dssp             EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEESCTTTSC-TTHHHHHHHH
T ss_pred             EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhc-cCCCCCEEEEEeecccccch-hHHHHHHHHH
Confidence            577888 66676543344678999999999999999999987642110 01245799999999997 54 3456666653


Q ss_pred             CCCCCCCCceEEEEEEeCCC
Q 003191          616 CPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~~  635 (840)
                          .....+++++.++|+.
T Consensus       339 ----~~~~~~~l~~a~Sr~~  354 (435)
T 1f20_A          339 ----NKGVFRELYTAYSREP  354 (435)
T ss_dssp             ----HTTSEEEEEEEESSCT
T ss_pred             ----HcCCccEEEEEECCCC
Confidence                1233457888888764

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=99.35  E-value=1.8e-12  Score=124.98  Aligned_cols=64  Identities=19%  Similarity=0.256  Sum_probs=49.4

Q ss_pred             eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHH
Q 003191          539 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  613 (840)
Q Consensus       539 V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~e  613 (840)
                      +.|+||||++... ...++++|||||+||||++|+++++.++.        ++++++ ++|+.+++.+.++ +++
T Consensus         3 ~~v~GP~G~~~~~-~~~~~~llIaGG~GiaPl~sm~~~l~~~~--------~~v~l~-g~R~~~~~~~~~e-l~~   66 (142)
T 3lyu_A            3 LNVAGPLGTPVPM-EKFGKILAIGAYTGIVEVYPIAKAWQEIG--------NDVTTL-HVTFEPMVILKEE-LEK   66 (142)
T ss_dssp             ----CCCSCCBCC-CCCSEEEEEEETTHHHHHHHHHHHHHHTT--------CEEEEE-EEEEGGGCCSHHH-HHT
T ss_pred             eeeeCCCCCCccC-CCCCeEEEEECcCcHHHHHHHHHHHHhcC--------CcEEEE-EeCCHHHhhHHHH-HHH
Confidence            4689999997654 45789999999999999999999997542        379999 9999999966544 444

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=99.32  E-value=2.2e-11  Score=141.27  Aligned_cols=95  Identities=11%  Similarity=0.083  Sum_probs=65.2

Q ss_pred             eeeeeccCcC-CCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHc
Q 003191          537 ITASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKES  614 (840)
Q Consensus       537 ~~V~VeGPYG-~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el  614 (840)
                      ++|.|.||+| .+....+...+++|||||+|||||++++++.....+.+......++.|+|++|+. +|+. +.++++++
T Consensus       359 ~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~l-y~dEL~~~  437 (539)
T 2qtl_A          359 PKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYL-FRKELRHF  437 (539)
T ss_dssp             CEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCT-THHHHHHH
T ss_pred             eEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhH-HHHHHHHH
Confidence            3788999997 4433223457899999999999999999996543321110124679999999999 5764 45555554


Q ss_pred             cCCCCCCCCceEEEEEEeCCCC
Q 003191          615 ICPFFSDKLNLETFIYVTRETE  636 (840)
Q Consensus       615 ~~~~~~~~~~l~I~iyVTr~~~  636 (840)
                      .    .....+++++.++|+..
T Consensus       438 ~----~~g~~~~l~~afSRd~~  455 (539)
T 2qtl_A          438 L----KHGILTHLKVSFSRDAP  455 (539)
T ss_dssp             H----HTTSSCEEEEEESSSCC
T ss_pred             H----HhCCCcEEEEEEccCCC
Confidence            3    12344688888888653

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=99.31  E-value=7.4e-12  Score=149.24  Aligned_cols=92  Identities=16%  Similarity=0.121  Sum_probs=63.8

Q ss_pred             eeeecc-CcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcc-hHHHHHHHHHHcc
Q 003191          538 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESI  615 (840)
Q Consensus       538 ~V~VeG-PYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~-dl~wl~~~l~el~  615 (840)
                      +|.|.| |.|.+....+...+++|||||+||||+++++++++.+.+.. ....+++.|+|++|+.+ |+. +.++++++.
T Consensus       482 ~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~v~L~~G~R~~~~D~l-y~dEL~~~~  559 (688)
T 1tll_A          482 VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDHI-YREETLQAK  559 (688)
T ss_dssp             EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHS-CCCCCCEEEEEEESCTTTTCT-THHHHHHHH
T ss_pred             EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhc-cCCCCCEEEEEEeccchhhhh-HHHHHHHHH
Confidence            577888 66676433234678999999999999999999988752110 01246899999999997 553 455565553


Q ss_pred             CCCCCCCCceEEEEEEeCCC
Q 003191          616 CPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       616 ~~~~~~~~~l~I~iyVTr~~  635 (840)
                          .....+++++.++++.
T Consensus       560 ----~~~~~~~l~~a~Sr~~  575 (688)
T 1tll_A          560 ----NKGVFRELYTAYSREP  575 (688)
T ss_dssp             ----HTTSEEEEEEEESSCT
T ss_pred             ----HcCCceEEEEEECCCC
Confidence                1233467888888764

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=99.29  E-value=2.4e-12  Score=153.26  Aligned_cols=94  Identities=12%  Similarity=0.212  Sum_probs=63.1

Q ss_pred             eeeeccCcCCCC--------------cCccCCceEEEEEcCCCchhhHHHHHHHHHhhcc----CCCCCCceEEEEEeec
Q 003191          538 TASVEGPYGHEV--------------PYHLMYENLILVAGGIGISPFLAILSDILHRINE----GKSCLPRNVLIVWAVK  599 (840)
Q Consensus       538 ~V~VeGPYG~~~--------------~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~----~~~~~~~kV~LVWavR  599 (840)
                      ++.|+||+|.+.              ...+...+++|||||+|||||+++++++..+...    +......++.|+|++|
T Consensus       493 ~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R  572 (682)
T 2bpo_A          493 HYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSR  572 (682)
T ss_dssp             CCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEES
T ss_pred             ceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecC
Confidence            466888888851              0112356899999999999999999998875420    0111246899999999


Q ss_pred             CcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCCC
Q 003191          600 KSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       600 ~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~~  635 (840)
                      +.+|+. ++++++++.   ......+++++.++|++
T Consensus       573 ~~~D~l-y~dEl~~~~---~~~g~~~~l~~afSr~d  604 (682)
T 2bpo_A          573 NTDDFL-YQDEWPEYA---KKLDGSFEMVVAHSRLP  604 (682)
T ss_dssp             SSSSCT-TTTTHHHHH---HHHGGGEEEEEEESCCT
T ss_pred             Chhhhh-hHHHHHHHH---HhcCCceEEEEEECCCC
Confidence            998874 444444431   01124578888888853

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=99.26  E-value=2.7e-12  Score=125.86  Aligned_cols=66  Identities=18%  Similarity=0.261  Sum_probs=50.0

Q ss_pred             e-eeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHc
Q 003191          538 T-ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKES  614 (840)
Q Consensus       538 ~-V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el  614 (840)
                      + +.|+||||++... ...++++|||||+||||++++++++.++.        ++++|+ ++|+.+++.+.++ ++++
T Consensus         6 ~vl~v~gP~G~~f~~-~~~~~~llIaGG~GItPl~sm~~~l~~~~--------~~v~l~-g~r~~~d~~~~~e-l~~l   72 (158)
T 3lrx_A            6 SLLNVAGPLGTPVPM-EKFGKILAIGAYTGIVEVYPIAKAWQEIG--------NDVTTL-HVTFEPMVILKEE-LEKA   72 (158)
T ss_dssp             ------CCCCCCBCC-CCCSEEEEEEETTHHHHHHHHHHHHHHHT--------CEEEEE-EECBGGGCCSHHH-HHHH
T ss_pred             EeeEEECCCCCCCcc-CCCCeEEEEEccCcHHHHHHHHHHHHhcC--------CcEEEE-EeCCHHHhhHHHH-HHHH
Confidence            5 4899999997543 46789999999999999999999997542        379999 9999999976554 4444

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=99.24  E-value=1.9e-11  Score=139.31  Aligned_cols=91  Identities=14%  Similarity=0.157  Sum_probs=61.9

Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCc-chHHHHHHHHHHccC
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC  616 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~-~dl~wl~~~l~el~~  616 (840)
                      +|.|.||+|.+....+...+++|||||+|||||++++++.....+.+.  ...++.|+|++|+. +|+. +.++++++..
T Consensus       289 ~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~--~~~~~~Lf~G~R~~~~D~l-y~dEl~~l~~  365 (458)
T 3qfs_A          289 LVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK--EVGETLLYYGCRRSDEDYL-YREELAQFHR  365 (458)
T ss_dssp             EEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHTC--CCCCEEEEEEESCTTTSCT-THHHHHHHHH
T ss_pred             EEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcCC--CCCCEEEEEEeCCchHhhh-HHHHHHHHHH
Confidence            688899999875433446799999999999999999998643211111  23579999999996 5664 4455555431


Q ss_pred             CCCCCCCceEEEEEEeCCC
Q 003191          617 PFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~~  635 (840)
                          +....++++.++|+.
T Consensus       366 ----~g~l~~l~~a~SRd~  380 (458)
T 3qfs_A          366 ----DGALTQLNVAFSREQ  380 (458)
T ss_dssp             ----HTSSSEEEEEETTSS
T ss_pred             ----cCCCCEEEEEEECCC
Confidence                122236777777754

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=99.18  E-value=4.5e-11  Score=140.89  Aligned_cols=91  Identities=14%  Similarity=0.169  Sum_probs=64.2

Q ss_pred             eeeeccCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcc-hHHHHHHHHHHccC
Q 003191          538 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESIC  616 (840)
Q Consensus       538 ~V~VeGPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~-dl~wl~~~l~el~~  616 (840)
                      +|.|.||+|++....+...+++|||||+||||+++++++.+...+.+.  ...++.|+|++|+.+ |+. +.++++++. 
T Consensus       449 ~v~v~~p~g~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~--~~~~~~L~~G~R~~~~D~l-y~~el~~~~-  524 (618)
T 3qe2_A          449 LVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK--EVGETLLYYGCRRSDEDYL-YREELAQFH-  524 (618)
T ss_dssp             EEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC--CCCCEEEEEEESCTTTSCT-THHHHHHHH-
T ss_pred             EEEEEEecCcccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCC--CCCCEEEEEecCCCccccc-hHHHHHHHH-
Confidence            678889999875433446789999999999999999999875432221  245799999999984 664 455555543 


Q ss_pred             CCCCCCCceEEEEEEeCCC
Q 003191          617 PFFSDKLNLETFIYVTRET  635 (840)
Q Consensus       617 ~~~~~~~~l~I~iyVTr~~  635 (840)
                         ......++++.++|+.
T Consensus       525 ---~~g~l~~l~~a~Srd~  540 (618)
T 3qe2_A          525 ---RDGALTQLNVAFSREQ  540 (618)
T ss_dssp             ---HHTSSSEEEEEETTSS
T ss_pred             ---hcCCCcEEEEEEcCCC
Confidence               1122237777788764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	840
d1f20a2	165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	2e-05
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	2e-04
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	4e-04
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	4e-04
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	5e-04
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	5e-04
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	0.002
d1g9la_	144	a.144.1.1 (A:) poly(A) binding protein {Human (Hom	0.003
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	0.004

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 557 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 616
             ILV  G GI+PF +        I          VL+    +   +       Y+E   
Sbjct: 11  PCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDH-----IYREETL 65

Query: 617 PFFSDKLNLETFIYVTRETEPP 638
              +  +  E +   +RE + P
Sbjct: 66  QAKNKGVFRELYTAYSREPDRP 87

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 557 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 616
            +I++  G GI+PF + L  +    ++         L +     S+ L     + +E   
Sbjct: 10  TIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLL-----YKEEFEK 64

Query: 617 PFFSDKLNLETFIYVTRETEPPLEEG 642
                  N      V+RE      E 
Sbjct: 65  MKEKAPDNFRLDFAVSREQTNEKGEK 90

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 557 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 592
           +L +++ G G++PF++++ D        K  L   V
Sbjct: 9   HLYMLSTGTGLAPFMSLIQDPEVYERFEKVVLIHGV 44

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 6/81 (7%)

Query: 557 NLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 616
             I++A G G++PF   L  +    +           +   V  S+        Y E   
Sbjct: 5   THIMIATGTGVAPFRGYLRRMFME-DVPNYRFGGLAWLFLGVANSDS-----LLYDEEFT 58

Query: 617 PFFSDKLNLETFIYVTRETEP 637
            +     +   +       + 
Sbjct: 59  SYLKQYPDNFRYDKALSREQK 79

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 556 ENLILVAGGIGISPFLAILSDILHRINEGKSCL 588
           E L ++A G  I P+L+IL             L
Sbjct: 7   ETLWMLATGTAIGPYLSILRLGKDLDRFKNLVL 39

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 557 NLILVAGGIGISPFLAILSDILH----RINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK 612
           N+I++AGG GI+P    L  +        N        + L+       N L     + +
Sbjct: 8   NVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNIL-----YKE 62

Query: 613 ESICPFFSDKLNLETFIYVTRETE 636
           E          N      ++RE +
Sbjct: 63  ELEEIQQKYPDNFRLTYAISREQK 86

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 558 LILVAGGIGISPFLAILSDILHRINEGKSCL 588
           ++++AGG GI+PFL++L  +  + +E    L
Sbjct: 8   VLMLAGGTGIAPFLSMLQVLEQKGSEHPVRL 38

>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 144

class: All alpha proteins
fold: PABP domain-like
superfamily: PABC (PABP) domain
family: PABC (PABP) domain
domain: poly(A) binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 7/49 (14%), Positives = 9/49 (18%)

Query: 436 PHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPP 484
           P        P  +  P          P       P    Q P   +   
Sbjct: 2   PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ 50

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 7/23 (30%), Positives = 17/23 (73%)

Query: 558 LILVAGGIGISPFLAILSDILHR 580
           ++L++GG+G++P +++L   L  
Sbjct: 8   IVLISGGVGLTPMVSMLKVALQA 30

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	840
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.52
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	99.48
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.45
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.44
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	99.43
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.35
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.24
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.21
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.19
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.11
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.1
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.04
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.03
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	98.97
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	98.93
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	98.91
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	98.88
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	98.86
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	98.83
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	98.78
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	98.75
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	98.75
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	98.74
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	98.63
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	98.57
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	98.25
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	98.18
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	98.11
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	97.98
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	97.63
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	95.69

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.52  E-value=2.2e-14  Score=134.51  Aligned_cols=72  Identities=21%  Similarity=0.451  Sum_probs=56.4

Q ss_pred             cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191          553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  632 (840)
Q Consensus       553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT  632 (840)
                      +....+||||||+||||++|++++++++.       .++++|+|++|+.+++.+.+++.+..     .+..+++++.+++
T Consensus         3 d~~~plvliagGtGIaP~~sil~~~~~~~-------~~~i~li~~~r~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~   70 (142)
T d1cqxa3           3 DAKTPIVLISGGVGLTPMVSMLKVALQAP-------PRQVVFVHGARNSAVHAMRDRLREAA-----KTYENLDLFVFYD   70 (142)
T ss_dssp             TCCSCEEEEESSCCHHHHHHHHHHHTCSS-------CCCEEEEEEESCSSSCHHHHHHHHHH-----HHCTTEEEEEEES
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHcC-------CCcEEEEeeccChhhhhhHHHHHHHH-----HhCCCeEEEEEEc
Confidence            45677999999999999999999876432       35799999999999997765554332     2446789999999


Q ss_pred             CCCC
Q 003191          633 RETE  636 (840)
Q Consensus       633 r~~~  636 (840)
                      ++..
T Consensus        71 ~~~~   74 (142)
T d1cqxa3          71 QPLP   74 (142)
T ss_dssp             SCCT
T ss_pred             ccCC
Confidence            8754

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.48  E-value=1.2e-13  Score=130.27  Aligned_cols=72  Identities=21%  Similarity=0.287  Sum_probs=53.8

Q ss_pred             cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191          553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  632 (840)
Q Consensus       553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT  632 (840)
                      +....++|||||+||||++|++++++++..      .++|+|+|++|+.+|+.+.++ ++++.    .+..++++...++
T Consensus         6 ~~~~p~vliagGtGItP~~s~l~~~~~~~~------~~~v~l~~~~r~~~d~~~~~e-l~~l~----~~~~~~~~~~~~~   74 (141)
T d1tvca2           6 RGMAPRYFVAGGTGLAPVVSMVRQMQEWTA------PNETRIYFGVNTEPELFYIDE-LKSLE----RSMRNLTVKACVW   74 (141)
T ss_dssp             CSSSCEEEEEESSTTHHHHHHHHHHHHHTC------CSCEEEEEECSSSTTCCCHHH-HHHHH----HHSSSCEEEECCS
T ss_pred             CCCCcEEEEECchhHHHHHHHHHHHHHcCC------CCceEEEeecccchhhhhHHH-HHHHH----hhccccccceeec
Confidence            345679999999999999999999987642      357999999999999865544 44442    1234677777666


Q ss_pred             CCC
Q 003191          633 RET  635 (840)
Q Consensus       633 r~~  635 (840)
                      +++
T Consensus        75 ~~~   77 (141)
T d1tvca2          75 HPS   77 (141)
T ss_dssp             SCS
T ss_pred             ccc
Confidence            643

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-13  Score=130.71  Aligned_cols=83  Identities=17%  Similarity=0.274  Sum_probs=60.3

Q ss_pred             cCcCCCCcCccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCC
Q 003191          543 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK  622 (840)
Q Consensus       543 GPYG~~~~~~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~  622 (840)
                      .|++...+....+++++|||||+||||++|++++++++..     ..++++|+|++|+.+++.+. ++++++.   ....
T Consensus         6 ~p~~~~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~~~~-----~~~~i~L~~~~r~~~~~~~~-~el~~l~---~~~~   76 (147)
T d1umka2           6 RPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPD-----DHTVCHLLFANQTEKDILLR-PELEELR---NKHS   76 (147)
T ss_dssp             CSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTT-----CCCEEEEEEEESSGGGCTTH-HHHHHHH---HHCT
T ss_pred             cCCCCCCcccccCCeEEEEECCeecchHHHHHHHHHhcCC-----CCceEEEEEEeCccccchhH-HHHhhhh---hhcC
Confidence            4666655556788999999999999999999999986542     23589999999999998554 4455543   1233


Q ss_pred             CceEEEEEEeCC
Q 003191          623 LNLETFIYVTRE  634 (840)
Q Consensus       623 ~~l~I~iyVTr~  634 (840)
                      .++++...++++
T Consensus        77 ~~~~~~~~~~~~   88 (147)
T d1umka2          77 ARFKLWYTLDRA   88 (147)
T ss_dssp             TTEEEEEEESSC
T ss_pred             cceEEEEEeccc
Confidence            556666555543

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.44  E-value=1.1e-13  Score=128.96  Aligned_cols=71  Identities=23%  Similarity=0.356  Sum_probs=54.0

Q ss_pred             CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCC
Q 003191          555 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       555 yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~  634 (840)
                      -+.+||||||+||||++|+++++.++..      .++|+|+|++|+.+++.+.+++ +++.    .+..++++...++++
T Consensus         5 ~rplv~IAgG~GItP~~s~l~~~~~~~~------~~~i~l~~~~r~~~d~~~~~el-~~l~----~~~~~~~~~~~~s~~   73 (133)
T d1krha2           5 KRPVLMLAGGTGIAPFLSMLQVLEQKGS------EHPVRLVFGVTQDCDLVALEQL-DALQ----QKLPWFEYRTVVAHA   73 (133)
T ss_dssp             SSCEEEEEEGGGHHHHHHHHHHHHHHCC------SSCEEEEEEESSGGGCCCHHHH-HHHH----HHCTTEEEEEEETTC
T ss_pred             CCCEEEEEccHhHHHHHHHHHHHHHcCC------CCceEEEEeecchhHHHHHHHH-HHHH----HhCCceeeeeeeecc
Confidence            3579999999999999999999887642      3579999999999999665444 4442    133468887778776


Q ss_pred             CC
Q 003191          635 TE  636 (840)
Q Consensus       635 ~~  636 (840)
                      +.
T Consensus        74 ~~   75 (133)
T d1krha2          74 ES   75 (133)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=7.8e-14  Score=130.96  Aligned_cols=71  Identities=14%  Similarity=0.235  Sum_probs=55.5

Q ss_pred             CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeCC
Q 003191          555 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE  634 (840)
Q Consensus       555 yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr~  634 (840)
                      ...++|||||+||||++|++++++.+.+      .+++.|+|++|+.+++.+.+++.+...     +..+++++.+++++
T Consensus         6 d~plv~IagGtGiaP~~s~l~~l~~~~~------~~~i~l~~~~r~~~d~~~~~el~~~~~-----~~~~~~~~~~~~~~   74 (143)
T d1gvha3           6 DTPVTLISAGVGQTPMLAMLDTLAKAGH------TAQVNWFHAAENGDVHAFADEVKELGQ-----SLPRFTAHTWYRQP   74 (143)
T ss_dssp             TCCEEEEEEGGGGHHHHHHHHHHHHHTC------CSCEEEEEEESCTTTCCSHHHHHHHHH-----TSSSEEEEEEESSC
T ss_pred             CCCEEEEEchhhHHHHHHHHHHHHHcCC------CceEEEEeecCCHHHHHHHHHHHHHHH-----hCCceEEEEEEecc
Confidence            3569999999999999999999987642      357999999999999877665554322     34568888888876


Q ss_pred             CC
Q 003191          635 TE  636 (840)
Q Consensus       635 ~~  636 (840)
                      ..
T Consensus        75 ~~   76 (143)
T d1gvha3          75 SE   76 (143)
T ss_dssp             CH
T ss_pred             Cc
Confidence            43

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1.6e-12  Score=120.75  Aligned_cols=53  Identities=30%  Similarity=0.391  Sum_probs=43.9

Q ss_pred             cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHH
Q 003191          553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFY  611 (840)
Q Consensus       553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l  611 (840)
                      +..+++||||||+||||++|++++++++..      .++|+|+|++|+.+++.+.+++.
T Consensus         3 d~~rplv~IagGtGiaP~~s~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l~   55 (135)
T d1qfja2           3 DEERPMILIAGGTGFSYARSILLTALARNP------NRDITIYWGGREEQHLYDLCELE   55 (135)
T ss_dssp             CSSSCEEEEEETTCHHHHHHHHHHHHHHCT------TCCEEEEEEESSGGGCTTHHHHH
T ss_pred             CCCCCEEEEECceeHHHHHHHHHHHHHccc------ccceeEEEecccHhHHHHHHHHH
Confidence            355789999999999999999999987642      35799999999999987655443

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=7.4e-12  Score=117.72  Aligned_cols=51  Identities=29%  Similarity=0.367  Sum_probs=42.4

Q ss_pred             CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHH
Q 003191          554 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF  610 (840)
Q Consensus       554 ~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~  610 (840)
                      ..++++||||||||||++|++++++...      ..++|.|+|++|+.+|+.+.+++
T Consensus         5 ~~k~lvlIa~GtGiaP~~s~l~~~~~~~------~~~~v~l~~g~r~~~d~~~~~el   55 (148)
T d1fdra2           5 HCETLWMLATGTAIGPYLSILRLGKDLD------RFKNLVLVHAARYAADLSYLPLM   55 (148)
T ss_dssp             CCSEEEEEEEGGGGHHHHHHHHHCCSCT------TCSEEEEEEEESSGGGCTTHHHH
T ss_pred             CCCEEEEEEcCeEHHHHHHHHHHHHHhC------CCCcEEEEEecCcHHHHHHHHHh
Confidence            4578999999999999999999976543      24689999999999998765543

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.21  E-value=2.9e-11  Score=109.78  Aligned_cols=53  Identities=23%  Similarity=0.430  Sum_probs=43.0

Q ss_pred             cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHH
Q 003191          553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  613 (840)
Q Consensus       553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~e  613 (840)
                      ...+++||||||+||||++|+++++.++.       .+++.++|++|+.+++.+.++ +++
T Consensus         6 ~~~~~~v~IagGtGiaP~~s~~~~l~~~~-------~~~~~l~~~~r~~~~~~~~~~-l~~   58 (120)
T d2piaa2           6 KRAKSFILVAGGIGITPMLSMARQLRAEG-------LRSFRLYYLTRDPEGTAFFDE-LTS   58 (120)
T ss_dssp             TTCSEEEEEEEGGGHHHHHHHHHHHHHHC-------SSEEEEEEEESCGGGCTTHHH-HHS
T ss_pred             CCCCCEEEEEecccHHHHHHHHHHHHHhc-------CCCeEEEEeeCCHHHhhhhHH-HHH
Confidence            35679999999999999999999997653       247999999999999865444 444

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=2.1e-11  Score=108.11  Aligned_cols=77  Identities=21%  Similarity=0.285  Sum_probs=64.4

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY  382 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~~~  382 (840)
                      .+++.+++.+.+++.+++++.+..+.|+||||+.|.++.   -++||||++|.|++ ++.++|+||..  |.+|++|.+.
T Consensus         4 ~~~V~~i~~lt~~v~~~~l~~~~~~~f~~GQ~v~l~~~~---~~~r~ySias~p~~-~~~l~l~ir~~~~g~~s~~l~~~   79 (97)
T d1qfja1           4 SCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDE---RDKRPFSMASTPDE-KGFIELHIGASEINLYAKAVMDR   79 (97)
T ss_dssp             EEEEEEEEESSSSCEEEEEEESSCCCCCTTCEEEEESSS---SCEEEEECCSCTTS-TTCEEEEEC------CCHHHHHH
T ss_pred             EEEEEEEEEcCCCEEEEEEeCCccCccCCCCEEEEEEcC---CCcEEEEEEEcCCC-CcEEEEEEeEccCCchhHhHhhc
Confidence            567889999999999999998888999999999999875   36799999999965 57899999976  8899999887


Q ss_pred             Hhh
Q 003191          383 ILS  385 (840)
Q Consensus       383 l~~  385 (840)
                      ++.
T Consensus        80 l~~   82 (97)
T d1qfja1          80 ILK   82 (97)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            754

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.11  E-value=6.6e-11  Score=111.94  Aligned_cols=57  Identities=19%  Similarity=0.342  Sum_probs=43.3

Q ss_pred             CCceEEEEEcCCCchhhHHHHHHHHHhhccC---CCCCCceEEEEEeecCcchHHHHHHH
Q 003191          554 MYENLILVAGGIGISPFLAILSDILHRINEG---KSCLPRNVLIVWAVKKSNELSLLSNF  610 (840)
Q Consensus       554 ~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~---~~~~~~kV~LVWavR~~~dl~wl~~~  610 (840)
                      ...+++|||||+||||++|++++++.+....   ......++.|+|++|+.+++...+++
T Consensus         5 ~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~d~~~~~e~   64 (162)
T d2bmwa2           5 PEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEEL   64 (162)
T ss_dssp             TTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHH
T ss_pred             CCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchhHHHHHHHH
Confidence            4579999999999999999999998654221   11234679999999999987544443

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.10  E-value=1.1e-10  Score=110.64  Aligned_cols=78  Identities=19%  Similarity=0.219  Sum_probs=54.7

Q ss_pred             cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191          553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  632 (840)
Q Consensus       553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT  632 (840)
                      +...+++|||||+||||++|++++++.+.+++ ....+++.|++++|+.+|+.+.+++. ++.   ......+.+....+
T Consensus         6 d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~-~~~~~~i~l~~g~r~~~d~~y~~e~~-~~~---~~~~~~~~~~~~~s   80 (160)
T d1fnda2           6 DPNATIIMLGTGTGIAPFRSFLWKMFFEKHDD-YKFNGLAWLFLGVPTSSSLLYKEEFE-KMK---EKAPDNFRLDFAVS   80 (160)
T ss_dssp             CTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTT-BCCCSEEEEEEEESSGGGCTTHHHHH-HHH---HHCTTTEEEEEEET
T ss_pred             CCCCCEEEEECchhHHHHHHHHHHHHHhhccc-ccCCceEEEEeecCcHHHHHHHHHHH-HHH---HhcCCceeEEEEEc
Confidence            34568999999999999999999998654332 23456899999999999986554443 332   12334556666665


Q ss_pred             CCC
Q 003191          633 RET  635 (840)
Q Consensus       633 r~~  635 (840)
                      ++.
T Consensus        81 ~~~   83 (160)
T d1fnda2          81 REQ   83 (160)
T ss_dssp             TTC
T ss_pred             cch
Confidence            554

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.04  E-value=7.8e-11  Score=111.27  Aligned_cols=54  Identities=22%  Similarity=0.383  Sum_probs=44.8

Q ss_pred             ccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHH
Q 003191          552 HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFY  611 (840)
Q Consensus       552 ~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l  611 (840)
                      ....+++||||||+||||++|++++++.+..      .+++.++|++|+.+++.+.+++.
T Consensus         4 ~~p~~~lvlIagGtGIaP~~sil~~~~~~~~------~~~~~l~~g~r~~~~~~~~~el~   57 (158)
T d1a8pa2           4 LLPGKHLYMLSTGTGLAPFMSLIQDPEVYER------FEKVVLIHGVRQVNELAYQQFIT   57 (158)
T ss_dssp             BCCCSEEEEEEEGGGGHHHHHHTTCHHHHHH------CSEEEEEEEESSGGGCTTHHHHH
T ss_pred             CCCCCCEEEEEchhhHHHHHHHHHHHHHhCC------CCceeeeeccccHHHHhhHHHHH
Confidence            3445899999999999999999999876542      35899999999999997766654

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.03  E-value=3.1e-10  Score=106.96  Aligned_cols=56  Identities=20%  Similarity=0.271  Sum_probs=44.0

Q ss_pred             CceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHH
Q 003191          555 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFY  611 (840)
Q Consensus       555 yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l  611 (840)
                      ..++||||||+||||++|+|++++.+.... ....+++.|+|++|+.+|+...+++.
T Consensus         3 ~~plllIa~GtGIaP~~s~l~~~~~~~~~~-~~~~~~i~l~~g~r~~~d~~y~~e~~   58 (154)
T d1jb9a2           3 NATHIMIATGTGVAPFRGYLRRMFMEDVPN-YRFGGLAWLFLGVANSDSLLYDEEFT   58 (154)
T ss_dssp             TCEEEEEEEGGGGHHHHHHHHHHHTEECTT-CCCCSEEEEEEEESSGGGCSSHHHHH
T ss_pred             CCCEEEEEcceeHHHHHHHHHHHHHhcccc-ccCCceEEEEEEecccchhHHHHHHH
Confidence            368999999999999999999998654221 23456899999999999975555444

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.97  E-value=8.7e-10  Score=98.08  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=62.9

Q ss_pred             EEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191          307 DVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  380 (840)
Q Consensus       307 ~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~  380 (840)
                      ++.+++.+.+++.++++..+..++|+||||+.|+++..+...+|||||+|+|.+  +.+.++||..  |.+|+.|+
T Consensus         7 kV~~v~~~t~~~~~~~l~~~~~~~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~~--~~~~~~i~~~~~G~~S~~L~   80 (99)
T d1a8pa1           7 RVLSVHHWNDTLFSFKTTRNPSLRFENGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKVQNGPLTSRLQ   80 (99)
T ss_dssp             EEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECCSSCSSHHHHT
T ss_pred             EEEEEEecCCCEEEEEecCCCCCccCCCcEEEEeccCCCceeEeeccccCCCCC--CcEEEEEEEeCCCChhHHHH
Confidence            577788889999999999998999999999999999777778899999999864  6888888875  78999884

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=98.93  E-value=7.2e-10  Score=102.81  Aligned_cols=110  Identities=15%  Similarity=0.262  Sum_probs=70.8

Q ss_pred             cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191          553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  632 (840)
Q Consensus       553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT  632 (840)
                      .+.++++|||||+||||++|++++++++...    ..++++|+|++|+.+++.+.+++.....    .......+..+..
T Consensus        10 ~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~~----~~~~v~l~~g~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~   81 (146)
T d2cnda2          10 RNARRLAMICGGSGITPMYQIIQAVLRDQPE----DHTEMHLVYANRTEDDILLRDELDRWAA----EYPDRLKVWYVID   81 (146)
T ss_dssp             ECCSEEEEEEEGGGHHHHHHHHHHHHHTTTT----CCCEEEEEEEESCGGGCTTHHHHHHHHH----HCTTTEEEEEEES
T ss_pred             CCCCEEEEEeceEEHhHHHHHHHHHHHhCCc----cCceEEEEEeecccccchhHHHHhhHHH----hCCCceeEEEeec
Confidence            3567999999999999999999999876422    2468999999999999876655443321    1223334433333


Q ss_pred             CCCCCC----CcccccccccccccCCCCCCCceeEEecCCch
Q 003191          633 RETEPP----LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN  670 (840)
Q Consensus       633 r~~~~~----~~~~~i~~~~~~~f~P~~sd~~i~~v~Gp~~~  670 (840)
                      ..+...    ...+.+.+..+....+...+...+++|||...
T Consensus        82 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGp~~m  123 (146)
T d2cnda2          82 QVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPM  123 (146)
T ss_dssp             CCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHH
T ss_pred             cccCcccccccccCccchHHHHHhcccCCCCcEEEEECCHHH
Confidence            322211    12233444444455555666778999999653

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.91  E-value=1.5e-09  Score=103.78  Aligned_cols=53  Identities=17%  Similarity=0.340  Sum_probs=43.0

Q ss_pred             ccCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHH
Q 003191          552 HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE  613 (840)
Q Consensus       552 ~~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~e  613 (840)
                      ....|+++|||||+||||++|+++++.++.        ++++++++.|+.+++.+. +++++
T Consensus         5 ~~~~~kvllIAgG~GitPl~sm~~~l~~~~--------~~v~l~~g~r~~~~~~~~-~el~~   57 (160)
T d1ep3b2           5 VTSTDKILIIGGGIGVPPLYELAKQLEKTG--------CQMTILLGFASENVKILE-NEFSN   57 (160)
T ss_dssp             CCTTSEEEEEEEGGGSHHHHHHHHHHHHHT--------CEEEEEEEESSGGGCCCH-HHHHT
T ss_pred             cCCCCEEEEEEeeeeHHHHHHHHHHHHhcc--------CceEEEEecCCHHHHHHH-HHHHH
Confidence            356678999999999999999999987542        479999999999998654 44444

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=98.88  E-value=7.1e-10  Score=100.05  Aligned_cols=77  Identities=21%  Similarity=0.351  Sum_probs=64.9

Q ss_pred             cceEEEEEEEecCceEEEEEeCCC------CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--Cch
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPA------NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW  375 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~------~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~  375 (840)
                      ...++++++.+.+++++++++.+.      .++|+||||+.|.+++..  ++||||++|.|.+ ++.++|+||..  |.+
T Consensus        11 ~~a~V~~~~~lt~di~~l~l~~p~~~~~~~~~~f~pGQ~v~l~~~g~~--~~R~ySias~p~~-~~~~~~~i~~~~~G~~   87 (109)
T d1tvca1          11 FEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTD--VSRSYSPANLPNP-EGRLEFLIRVLPEGRF   87 (109)
T ss_dssp             EEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTSCS--SSEEECCBCCSSS-SCCEEEEECCCTTSSS
T ss_pred             EEEEEEEEEEeCCCeEEEEEECCCcccccccccCCCCcEEEEEECCcc--ccccceeccCCcC-CceeEEEEEEeCCchH
Confidence            456788889999999999998764      468999999999987543  5799999999875 57899999997  789


Q ss_pred             hHHHHHHH
Q 003191          376 TENLRDYI  383 (840)
Q Consensus       376 TkkL~~~l  383 (840)
                      |+.|++.+
T Consensus        88 S~~l~~~l   95 (109)
T d1tvca1          88 SDYLRNDA   95 (109)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHhhC
Confidence            99998764

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=98.86  E-value=3.2e-09  Score=93.85  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=62.4

Q ss_pred             cceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN  378 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~Tkk  378 (840)
                      ...++++++.+.+++.+++++.+.   .+.|+||||+.|.+++..  ++||||++|++.+  +.+.++||..  |.+|+.
T Consensus         4 ~~~~v~~v~~lt~~v~~~~l~~~~~~~~~~f~pGQ~v~l~i~g~~--~~r~ys~~~~~~~--~~~~~~i~~~~~G~~s~~   79 (100)
T d1krha1           4 FEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGTT--ETRSYSFSSQPGN--RLTGFVVRNVPQGKMSEY   79 (100)
T ss_dssp             EEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTSS--CEEEEECCSCTTC--SEEEEEEECCTTCHHHHH
T ss_pred             EEEEEEEEEEcCCCeEEEEEEcCCCCcCCCCCCCEEEEEEECCcc--eeEEeeccCCCcc--CceEEEEEEeeCCchhhh
Confidence            356889999999999999998764   367999999999998543  5799999999864  7889999987  888998


Q ss_pred             HHHH
Q 003191          379 LRDY  382 (840)
Q Consensus       379 L~~~  382 (840)
                      |++.
T Consensus        80 l~~~   83 (100)
T d1krha1          80 LSVQ   83 (100)
T ss_dssp             HHTT
T ss_pred             hhcc
Confidence            8754

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=2.4e-09  Score=102.41  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=50.9

Q ss_pred             cCCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEe
Q 003191          553 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT  632 (840)
Q Consensus       553 ~~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVT  632 (840)
                      +...++||||||+||||++|+|++.+...+.+. ....++.++|..|+.++...+.+++.+..    .....+++++.++
T Consensus         7 ~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~s   81 (165)
T d1f20a2           7 NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKG-MNPCPMVLVFGCRQSKIDHIYREETLQAK----NKGVFRELYTAYS   81 (165)
T ss_dssp             CTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEESCTTTSCTTHHHHHHHH----HTTSEEEEEEEES
T ss_pred             CCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcC-CCCCCeEEEEeccccHHHHHHHHHHHHHH----hcCCceEEEEEEe
Confidence            345679999999999999999998765432211 12345677777776666545555554443    2345566777676


Q ss_pred             CCCC
Q 003191          633 RETE  636 (840)
Q Consensus       633 r~~~  636 (840)
                      ++..
T Consensus        82 r~~~   85 (165)
T d1f20a2          82 REPD   85 (165)
T ss_dssp             SCTT
T ss_pred             cccc
Confidence            6543

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.3e-08  Score=90.17  Aligned_cols=73  Identities=18%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             ceEEEEEEEecCceEEEEEeCCCCcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--CchhHHHH
Q 003191          305 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR  380 (840)
Q Consensus       305 ~~~vasv~~Lp~~vvrLtI~~p~~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg~TkkL~  380 (840)
                      ..++++++.+.+++.+++++.+ .++|+||||+.|.++..+...+|||||+|.|.+  +.++++||..  |.+|+.|.
T Consensus         5 ~a~V~~v~~~t~~v~~l~~~~p-~~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~--~~~~~~vk~~~~G~~S~~l~   79 (99)
T d1fdra1           5 TGKVTKVQNWTDALFSLTVHAP-VLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTVPDGKLSPRLA   79 (99)
T ss_dssp             EEEEEEEEECSSSEEEEEEECC-CCCCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECCTTCSSHHHHH
T ss_pred             EEEEEEEEEcCCCEEEEEEcCC-CCCCCCCcEEEeccCCCCCcEEEEEccCCCCCC--ceeEEEEEEecCcHHHHHHh
Confidence            5688899999999999999875 578999999999999777788999999999864  6899999986  77898874

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=1e-08  Score=98.65  Aligned_cols=76  Identities=20%  Similarity=0.271  Sum_probs=52.3

Q ss_pred             CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeC
Q 003191          554 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  633 (840)
Q Consensus       554 ~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr  633 (840)
                      .-.++||||||+|||||.|++++.....+.+  ....++.|+|++|+.++...++++++++.    .+....++.+..++
T Consensus         6 ~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~--~~~g~~~L~~G~R~~~~d~~y~~el~~~~----~~~~~~~~~~a~Sr   79 (160)
T d1ja1a3           6 STTPVIMVGPGTGIAPFMGFIQERAWLREQG--KEVGETLLYYGCRRSDEDYLYREELARFH----KDGALTQLNVAFSR   79 (160)
T ss_dssp             TTSCEEEECCGGGGHHHHHHHHHHHHHHHTT--CCCCCEEEEEEESCTTTCCTTHHHHHHHH----HTTSSSEEEEEETT
T ss_pred             CCCCEEEEEccHhHHHHHHHHHHHHHHHHcC--CCCCCEEEEEecCCccccHHHHHHHHHHH----HcCCCceeEEEeec
Confidence            4568999999999999999999865433222  13568999999998764334555555543    13344567777776


Q ss_pred             CC
Q 003191          634 ET  635 (840)
Q Consensus       634 ~~  635 (840)
                      +.
T Consensus        80 ~~   81 (160)
T d1ja1a3          80 EQ   81 (160)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.75  E-value=9.9e-09  Score=90.76  Aligned_cols=77  Identities=21%  Similarity=0.179  Sum_probs=63.0

Q ss_pred             ccceEEEEEEEecCceEEEEEeCCC-CcccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEecC--chhHHH
Q 003191          303 RRTVDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLG--EWTENL  379 (840)
Q Consensus       303 ~~~~~vasv~~Lp~~vvrLtI~~p~-~~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~G--g~TkkL  379 (840)
                      +..+++++++.+.+++.+++++.+. ...++||||+.|+++..+...++|||+++.+.+ ++.+++.+|..+  ..|+.|
T Consensus         4 ~~~~~V~~~~~~~~~i~~l~l~~~~~~~~~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~-~~~i~~~i~~~~~g~~t~~l   82 (101)
T d1ep3b1           4 QEMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGDETTGTYKL   82 (101)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCCTTSHHHHH
T ss_pred             CeeEEEEEEEEecCCEEEEEEECCChhhccCCCceEEEEccCCccEeeccceeeeCCCC-CcEEEEEEeecCcchhhHHH
Confidence            3457889999999999999998764 346899999999999766667799999998754 689999999864  568776


Q ss_pred             H
Q 003191          380 R  380 (840)
Q Consensus       380 ~  380 (840)
                      .
T Consensus        83 ~   83 (101)
T d1ep3b1          83 S   83 (101)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=98.74  E-value=2.4e-08  Score=89.77  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=63.2

Q ss_pred             cccceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcC--CCCCceeceEeeeCCCCCCCeEEEEEEec----
Q 003191          302 SRRTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRE--LSWLQWHPFSVSSSPLEGKYHSSVLIKVL----  372 (840)
Q Consensus       302 ~~~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~--is~~q~HPFTIaSsp~~~~~~Lsf~IK~~----  372 (840)
                      .++.+++.+++.+.+++.++++..+.   .+.+.||||+.|.++.  -.....|||||+|.|++  +.+++.||..    
T Consensus         3 g~r~~~V~~~~~~t~dv~~~~l~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~~--~~~~~~v~~~~~~~   80 (111)
T d1cqxa2           3 GWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNG--RTYRISVKREGGGP   80 (111)
T ss_dssp             SCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCCS--SCEEEEEECCCBTT
T ss_pred             CceEEEEEEEEEeCCCcEEEEEEeCCcCcccCCCCCCEEEEEeecCCCcceeeeeccccCCccC--CCeEEEEEEecCCC
Confidence            34567899999999999999998643   2689999999999873  23467899999999853  6799999864    


Q ss_pred             ---CchhHHHHHHH
Q 003191          373 ---GEWTENLRDYI  383 (840)
Q Consensus       373 ---Gg~TkkL~~~l  383 (840)
                         |..|+.|++.+
T Consensus        81 ~~~G~~S~~l~~~l   94 (111)
T d1cqxa2          81 QPPGYVSNLLHDHV   94 (111)
T ss_dssp             BCCCHHHHHHHHHC
T ss_pred             cccchhHHHHHhcC
Confidence               56788787654

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=6.8e-08  Score=86.13  Aligned_cols=81  Identities=10%  Similarity=0.112  Sum_probs=64.1

Q ss_pred             ccccceEEEEEEEecCceEEEEEeCCC---CcccCCCcEEEEEEcCC--CCCceeceEeeeCCCCCCCeEEEEEEec--C
Q 003191          301 QSRRTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVREL--SWLQWHPFSVSSSPLEGKYHSSVLIKVL--G  373 (840)
Q Consensus       301 r~~~~~~vasv~~Lp~~vvrLtI~~p~---~~~~~PGQhvfL~vP~i--s~~q~HPFTIaSsp~~~~~~Lsf~IK~~--G  373 (840)
                      +.++..++++++.+.+++.++++..+.   ...++||||+.|+++.-  .....++||++|.++  ++.++|.||..  |
T Consensus         4 ~g~~~~~v~~~~~~t~~~~~~~l~~~d~~~~~~~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~--~~~~~i~vk~~~~G   81 (107)
T d1gvha2           4 EGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKREEGG   81 (107)
T ss_dssp             SSEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECCTTC
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEEcCCcCcccCCCCCCEEEEEeeccccCceEEeeccccCCCC--CCceEEEEEEcCCc
Confidence            334577899999999999999998542   35799999999999733  234679999998875  47899999975  7


Q ss_pred             chhHHHHHHH
Q 003191          374 EWTENLRDYI  383 (840)
Q Consensus       374 g~TkkL~~~l  383 (840)
                      ..|+.|++.+
T Consensus        82 ~~S~~l~~~l   91 (107)
T d1gvha2          82 QVSNWLHNHA   91 (107)
T ss_dssp             HHHHHHHHTC
T ss_pred             chhHHHHhcC
Confidence            7899887654

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.3e-08  Score=95.61  Aligned_cols=74  Identities=15%  Similarity=0.206  Sum_probs=55.3

Q ss_pred             CCceEEEEEcCCCchhhHHHHHHHHHhhccCCCCCCceEEEEEeecCcchHHHHHHHHHHccCCCCCCCCceEEEEEEeC
Q 003191          554 MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR  633 (840)
Q Consensus       554 ~yd~vVLIAGGsGITP~lsiL~~Ll~~~~~~~~~~~~kV~LVWavR~~~dl~wl~~~l~el~~~~~~~~~~l~I~iyVTr  633 (840)
                      ...++||||||+||||++|+++++..+..      .+++.++|.+|+.++...+++++.++.    .+...+++++.+++
T Consensus         5 ~~~plvlIa~GtGIaP~~s~l~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~el~~~~----~~~~~~~~~~~~s~   74 (153)
T d1ddga2           5 PETPVIMIGPGTGIAPFRAFMQQRAADEA------PGKNWLFFGNPHFTEDFLYQVEWQRYV----KEGVLTRIDLAWSR   74 (153)
T ss_dssp             TTSCEEEECCGGGGHHHHHHHHHHHHHTC------CSCEEEEEEESCHHHHCTTHHHHHHHH----HTTSCCEEEEEETT
T ss_pred             CCCCEEEEECchhHHHHHHHHHHHHHhcC------CCceEEeecccCcHHHHHhHHHHHHHH----HcCCCceEEEEEEe
Confidence            45679999999999999999999887642      346788888887776656666665553    24456788888888


Q ss_pred             CCCC
Q 003191          634 ETEP  637 (840)
Q Consensus       634 ~~~~  637 (840)
                      +...
T Consensus        75 ~~~~   78 (153)
T d1ddga2          75 DQKE   78 (153)
T ss_dssp             SSSS
T ss_pred             cccC
Confidence            7654

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=98.25  E-value=1.7e-06  Score=77.51  Aligned_cols=68  Identities=18%  Similarity=0.105  Sum_probs=57.0

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL  372 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~  372 (840)
                      ..+++.+.+.+.+|+.++++..+..   ..+.||||+.|+++.......++||++|.+.+ ++.++|.||..
T Consensus         3 ~~~klv~~~~it~d~~~~~f~~p~~~~~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~-~~~~~~~ik~~   73 (114)
T d2cnda1           3 IHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVY   73 (114)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECC
T ss_pred             EEEEEEEEEEcCCCeEEEEEECCCcccccCccceEEEEEEeecccceEEeeeccCCCCCC-CCEEEEEEEec
Confidence            3578899999999999999886543   56899999999998666667899999999865 57999999974

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.9e-06  Score=77.08  Aligned_cols=67  Identities=19%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCC---cccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEe
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV  371 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~---~~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~  371 (840)
                      ..+++++++.+.+|+.++++..+..   ..+.||||+.++++..+....++||++|.+.+ ++.+++.||.
T Consensus        13 ~~~~v~~~~~it~d~~~f~f~~p~~~~~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~-~g~~~~~vk~   82 (124)
T d1umka1          13 YPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKV   82 (124)
T ss_dssp             EEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEEC
T ss_pred             EEEEEEEEEEeCCCeEEEEEEcCCcccccccceeeEEEEEecccceeEEEeeccCCcccC-CceEEEEEEe
Confidence            5778999999999999999986543   47899999999998665566799999999865 6899999995

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=98.11  E-value=4.8e-06  Score=73.88  Aligned_cols=79  Identities=14%  Similarity=0.139  Sum_probs=64.1

Q ss_pred             cceEEEEEEEecCceEEEEEeCCCC--c-ccCCCcEEEEEEcCCCCCceeceEeeeCCCCCCCeEEEEEEec--Cc-hhH
Q 003191          304 RTVDVLSASCLPCGTVELVLSKPAN--L-RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GE-WTE  377 (840)
Q Consensus       304 ~~~~vasv~~Lp~~vvrLtI~~p~~--~-~~~PGQhvfL~vP~is~~q~HPFTIaSsp~~~~~~Lsf~IK~~--Gg-~Tk  377 (840)
                      ..+++++++.+..|+.++++..+..  + .|+||||+-|.++..   ..++|||+|.|.+ ++.++|+||..  |. .|+
T Consensus         9 ~~~~V~~~~~~t~di~~~~l~~~~g~~lp~f~pGQ~v~v~~~~~---~~R~YSl~s~p~~-~~~~~i~Vk~~~~g~~~S~   84 (103)
T d2piaa1           9 LRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNG---SRRTYSLCNDSQE-RNRYVIAVKRDSNGRGGSI   84 (103)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTS---CEEEEECCSCTTC-CSEEEEEEECCTTSCSHHH
T ss_pred             EEEEEEEEEEcCCCeEEEEEECCCCCcCCCCCCCceEEEEEecc---eeEEEEEecCCCC-CCEEEEEEEEECCCccchH
Confidence            4678999999999999999997643  3 799999999999753   4599999999864 58999999996  43 478


Q ss_pred             HHHHHHhhc
Q 003191          378 NLRDYILSK  386 (840)
Q Consensus       378 kL~~~l~~~  386 (840)
                      .|++.++..
T Consensus        85 ~l~~~l~~G   93 (103)
T d2piaa1          85 SFIDDTSEG   93 (103)
T ss_dssp             HHHHSCCTT
T ss_pred             HHHhcCCCC
Confidence            888766543

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.98  E-value=1.3e-05  Score=74.65  Aligned_cols=77  Identities=19%  Similarity=0.130  Sum_probs=59.0

Q ss_pred             ceEEEEEEEec-----CceEEEEEeCCCCcccCCCcEEEEEEcCC----CCCceeceEeeeCCCCC---CCeEEEEEEec
Q 003191          305 TVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLEG---KYHSSVLIKVL  372 (840)
Q Consensus       305 ~~~vasv~~Lp-----~~vvrLtI~~p~~~~~~PGQhvfL~vP~i----s~~q~HPFTIaSsp~~~---~~~Lsf~IK~~  372 (840)
                      ..++++++.+.     .++.+|.++.+..+.|.||||+-|.+|..    .....+.|||||+|.++   ...+++.||..
T Consensus        21 ~a~V~~~~~lt~~~~~~~t~~i~~~~~~~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSIaSsP~~~~~~~~~l~~~Vk~~  100 (136)
T d1fnda1          21 VGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRL  100 (136)
T ss_dssp             EEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCTTCTTSSSCEEEEEEECC
T ss_pred             EEEEEeEEEccCCCCCceEEEEecccCCCCcccCCCEEEEECCCcccccccceeEEeecccCCcCCCCCCcEEEEEEEEe
Confidence            45677777774     35788999988889999999999999732    34678999999998652   35799999863


Q ss_pred             -----------CchhHHHHH
Q 003191          373 -----------GEWTENLRD  381 (840)
Q Consensus       373 -----------Gg~TkkL~~  381 (840)
                                 |-.|+.|++
T Consensus       101 ~~~~~~~~~~~G~~S~~L~d  120 (136)
T d1fnda1         101 IYTNDAGETIKGVCSNFLCD  120 (136)
T ss_dssp             EEECTTSCEEECHHHHHHHT
T ss_pred             ecccCCCcCCCceEehhhcc
Confidence                       556777754

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=97.63  E-value=0.00012  Score=67.51  Aligned_cols=68  Identities=15%  Similarity=0.062  Sum_probs=51.3

Q ss_pred             ceEEEEEEEec-----CceEEEEEeCCC-CcccCCCcEEEEEEcCC----CCCceeceEeeeCCCCC---CCeEEEEEEe
Q 003191          305 TVDVLSASCLP-----CGTVELVLSKPA-NLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLEG---KYHSSVLIKV  371 (840)
Q Consensus       305 ~~~vasv~~Lp-----~~vvrLtI~~p~-~~~~~PGQhvfL~vP~i----s~~q~HPFTIaSsp~~~---~~~Lsf~IK~  371 (840)
                      ..++++++.+.     .++.+++++.+. .+.|.||||+-|..|..    .....+.|||+|+|.++   .+.+++.||+
T Consensus        14 ~a~V~~~~~lt~~~~~~~v~~i~~~~~~~~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSias~p~~~~~~~~~~~~~Vk~   93 (133)
T d2bmwa1          14 IGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQ   93 (133)
T ss_dssp             EEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEEC
T ss_pred             EEEEEEEEEccCCCCCceEEEEEEccCCccCCccCCCEEEEEeccccccccccceeeeeecCCCcCCCCCccEEEEEEEe
Confidence            45677777764     247888888654 57999999999999832    34567999999998653   3579999996


Q ss_pred             c
Q 003191          372 L  372 (840)
Q Consensus       372 ~  372 (840)
                      .
T Consensus        94 ~   94 (133)
T d2bmwa1          94 L   94 (133)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=95.69  E-value=0.029  Score=52.59  Aligned_cols=67  Identities=15%  Similarity=0.118  Sum_probs=51.3

Q ss_pred             ceEEEEEEEecC-----ceEEEEEeCCCCcccCCCcEEEEEEcC------CCCCceeceEeeeCCCCC---CCeEEEEEE
Q 003191          305 TVDVLSASCLPC-----GTVELVLSKPANLRYNALSFFFLQVRE------LSWLQWHPFSVSSSPLEG---KYHSSVLIK  370 (840)
Q Consensus       305 ~~~vasv~~Lp~-----~vvrLtI~~p~~~~~~PGQhvfL~vP~------is~~q~HPFTIaSsp~~~---~~~Lsf~IK  370 (840)
                      ..+++..+.+.+     ++.++.++.+..++|.|||++-|..+.      ...++-+-|||||++...   .+.+.+.||
T Consensus        30 ~a~v~~n~~Lt~~~s~k~t~hie~dl~~~~~y~~Gq~lgI~p~~~~~~~~~~p~~~R~YSIaSSp~~~~~~~~~~~~~V~  109 (157)
T d1jb9a1          30 TATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVR  109 (157)
T ss_dssp             EEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEE
T ss_pred             EEEEEeEEEcccCCCCceEEEEEecCCCCccEecCceEEEEcCCccccccCccCCcCEEEecCCCcCCCCCCCEEEEEEE
Confidence            346666666653     578888888778999999999999873      234677899999998643   346888898


Q ss_pred             e
Q 003191          371 V  371 (840)
Q Consensus       371 ~  371 (840)
                      .
T Consensus       110 ~  110 (157)
T d1jb9a1         110 R  110 (157)
T ss_dssp             C
T ss_pred             E
Confidence            6