Citrus Sinensis ID: 003200

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840
Protein Sequence
MSGILVFACLLLELLVISISFFRGSSYHVGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNCTMFMK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccEEEEEccccccccccccccEEEcccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccHHHHHcccccccEEEcccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEEccccccccccccEEEEEcccccccHHHHHHHHcccccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcHHHccccccccEEEccccEEEEEEcccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHHcccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHHHcccccccccEEEEEEcccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccccccHHHHccccccEEEccccccccccccHHHcccccccEEEcccccccccccccHccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHHcccccccHEEEcccccccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccccHHHcccccccEEEEccccccccccHHHHccHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcHccccEEEcccccccccccHHHHHccccccEEEcccccccccccHccccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccccccccccEEEEccccccccccccccccccHHHHHHccccccccccccHHHcccccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHccccccEEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHcHHHHHHHHcccccccccccccEEEEEEcccccccccccHHHHcccccEEEEcccccccccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHccccccccccccHHHccccc
Coil and Loop (DISEMBL)
MSGILVFACLLLELLVISISffrgssyhvgcLETERRALLRFKQdlqdpsnrlaswtgdgdcctwagvacgnVTGHILelnlrnpstsnprsmlvgkvnpalldlkhlsyldlssndfqgvqiprfigsmrnlrylnlsdtqfvgmippqlgnlsdlqfldlssnylyvdnvwwlsglsflehldlrsVNLSKASDWLMATNTLPSLLELRlsncslhhfptlaspiprglqnltslkhldldsnhfnssipdwlykfspleclnlrnnslQGTISDAIGNLTSVSWLDLSIniglqgriprsmanfcnlksvnlrgvHLSQEISEILDIFSGcvsnglesldmrsssiyghltdQLGQFRNLVTLNlannsivglipesfgqlsTLRELQIYDNKLNGTLSEFHFAnltklswfrvggnqltfevkhdwippfqLVALGlhncyvgsrfpqwlhsqKHLQYLNLLnsrisdifpirflksasqlkFLDVGLNQFhgkisnltkNTQLLFLSVnsnnmsgplplvssnlvyldfsnnsfsgsISHFLCYRVNetksleglkltdnylqgeipdcwmsyQNLKVLKLsnnkfsgnlpnslgsITSLVWLYLRKNrlsgkipislknctalasldvdenefvgniptwFGERFSRMLVLILRsnqfhgplpktICDLAFLQILDLAdnnlsgaipkcisnltgmvtvkSFTGSVVYREILPLVSlldisrnnfsGEILSEVTNLKALQSINFSFntftgripesigtMRALESvdfsvnqlsgeipqsmsslTFLNHLnlsnnnltgkiplstqlqsfnassfagndlcgaplpknctmfmk
Flexible Loop (DISEMBL)
MSGILVFACLLLELLVISISFFRGSSYHVGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDLCgaplpknctmfmk
Low Complexity Region (SEG)
MSGILVFAClllellVISISFFRGSSYHVGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPAlldlkhlsyldlssNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMssltflnhlnlsnnnlTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNCTMFMK
Disordered region (IsUnstruct)
***ILVFACLLLELLVISISFFRGSSYHVGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLR*********MLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQL*********SLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDLCGA***********
Disordered Region (DISOPRED)
**GILVFACLLLELLVISISFFRGSS*****LETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNCT****
Disordered Region (DISEMBL)
MSGILVFACLLLELLVISISFFRGSSYHVGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNCTMFMK
Disordered Region (DISPRO)
*SGILVFACLLLELLVISISFFRGSSYHVGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNC*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGILVFACLLLELLVISISFFRGSSYHVGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNCTMFMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	840	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.917	0.617	0.333	6e-85
Q9FL28	1173	LRR receptor-like serine/	no	no	0.895	0.641	0.311	4e-81
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.865	0.580	0.313	8e-77
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.883	0.622	0.298	2e-63
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.688	0.524	0.323	1e-58
Q9LP24	1120	Probable leucine-rich rep	no	no	0.834	0.625	0.294	2e-58
Q9C9H7	847	Receptor-like protein 12	no	no	0.672	0.667	0.306	2e-58
O49318	1124	Probable leucine-rich rep	no	no	0.745	0.556	0.298	6e-57
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.704	0.537	0.309	8e-56
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.838	0.619	0.290	1e-55

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  316 bits (809), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 290/870 (33%), Positives = 431/870 (49%), Gaps = 99/870 (11%)

Query: 30  GCLETERRALLRFKQDL------QDPSNRLASWTGDG-DCCTWAGVACGNVTG--HILEL 80
           G +  + + LL  K+ L       DP   L  W  D  + C+W GV C N TG   ++ L
Sbjct: 21  GIINNDLQTLLEVKKSLVTNPQEDDP---LRQWNSDNINYCSWTGVTCDN-TGLFRVIAL 76

Query: 81  NLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSD 140
           NL           L G ++P      +L +LDLSSN+  G  IP  + ++ +L  L L  
Sbjct: 77  NLTGLG-------LTGSISPWFGRFDNLIHLDLSSNNLVG-PIPTALSNLTSLESLFLFS 128

Query: 141 TQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMA 200
            Q  G IP QLG+L +++ L +  N L  D    L  L  L+ L L S  L         
Sbjct: 129 NQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRL--------- 179

Query: 201 TNTLPSLLE--LRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKF 258
           T  +PS L   +R+ +  L     L  PIP  L N + L       N  N +IP  L + 
Sbjct: 180 TGPIPSQLGRLVRVQSLILQD-NYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRL 238

Query: 259 SPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGV 318
             LE LNL NNSL G I   +G ++ + +L L  N  LQG IP+S+A+  NL++++L   
Sbjct: 239 ENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMAN-QLQGLIPKSLADLGNLQTLDLSAN 297

Query: 319 HLSQEI-------SEILDIF------------SGCVSN-GLESLDMRSSSIYGHLTDQLG 358
           +L+ EI       S++LD+             S C +N  LE L +  + + G +  +L 
Sbjct: 298 NLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELS 357

Query: 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
           + ++L  L+L+NNS+ G IPE+  +L  L +L +++N L GTLS    +NLT L W  + 
Sbjct: 358 KCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSP-SISNLTNLQWLVLY 416

Query: 419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLH---------------------SQ 457
            N L  ++  +     +L  L L+        PQ +                      S 
Sbjct: 417 HNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSI 476

Query: 458 KHLQYLNLLNSRISDI---FPIRFLKSASQLKFLDVGLNQFHGKISN---LTKNTQLLFL 511
             L+ LNLL+ R +++    P   L +  QL  LD+  NQ  G I +     K  + L L
Sbjct: 477 GRLKELNLLHLRQNELVGGLPAS-LGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLML 535

Query: 512 SVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE 570
             NS   + P  L+S  NL  ++ S+N  +G+I H LC     + S     +T+N  + E
Sbjct: 536 YNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLC----GSSSYLSFDVTNNGFEDE 590

Query: 571 IPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALA 630
           IP    + QNL  L+L  N+ +G +P +LG I  L  L +  N L+G IP+ L  C  L 
Sbjct: 591 IPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLT 650

Query: 631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG 690
            +D++ N   G IP W G + S++  L L SNQF   LP  + +   L +L L  N+L+G
Sbjct: 651 HIDLNNNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNG 709

Query: 691 AIPKCISNLTGM----VTVKSFTGSVVYR-EILPLVSLLDISRNNFSGEILSEVTNLKAL 745
           +IP+ I NL  +    +    F+GS+      L  +  L +SRN+ +GEI  E+  L+ L
Sbjct: 710 SIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDL 769

Query: 746 QS-INFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
           QS ++ S+N FTG IP +IGT+  LE++D S NQL+GE+P S+  +  L +LN+S NNL 
Sbjct: 770 QSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLG 829

Query: 805 GKIPLSTQLQSFNASSFAGN-DLCGAPLPK 833
           GK  L  Q   + A SF GN  LCG+PL +
Sbjct: 830 GK--LKKQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  303 bits (776), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 265/850 (31%), Positives = 391/850 (46%), Gaps = 98/850 (11%)

Query: 21  FFRGSSYHVGCLETERRALLRFKQDLQ-DPSNRLASWTGDGDC--CTWAGVACGNVTGHI 77
           FF G +      E E  AL  FK  +  DP   L+ WT  G    C W G+ C + TGH+
Sbjct: 16  FFFGIALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITC-DSTGHV 74

Query: 78  LELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLN 137
           + ++L           L G ++PA+ +L +L  LDL+SN F G +IP  IG +  L  L 
Sbjct: 75  VSVSLL-------EKQLEGVLSPAIANLTYLQVLDLTSNSFTG-KIPAEIGKLTELNQLI 126

Query: 138 LSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDW 197
           L    F G IP  +  L ++ +LDL +N L  D    +   S L  +     NL+     
Sbjct: 127 LYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGK--- 183

Query: 198 LMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYK 257
                 L  L+ L++   + +H   L   IP  +  L +L  LDL  N     IP     
Sbjct: 184 --IPECLGDLVHLQMFVAAGNH---LTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGN 238

Query: 258 FSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRG 317
              L+ L L  N L+G I   IGN +S+  L+L  N  L G+IP  + N   L+++ +  
Sbjct: 239 LLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDN-QLTGKIPAELGNLVQLQALRIYK 297

Query: 318 VHLSQEISEIL-------------DIFSGCVSN------GLESLDMRSSSIYGHLTDQLG 358
             L+  I   L             +   G +S        LE L + S++  G     + 
Sbjct: 298 NKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSIT 357

Query: 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
             RNL  L +  N+I G +P   G L+ LR L  +DN L G +     +N T L    + 
Sbjct: 358 NLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPS-SISNCTGLKLLDLS 416

Query: 419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRF 478
            NQ+T E+   +     L  + +   +     P                    DIF    
Sbjct: 417 HNQMTGEIPRGF-GRMNLTFISIGRNHFTGEIPD-------------------DIF---- 452

Query: 479 LKSASQLKFLDVGLNQFHGKISNLTKNTQ-LLFLSVNSNNMSGPLPLVSSNLVYLD---F 534
             + S L+ L V  N   G +  L    Q L  L V+ N+++GP+P    NL  L+    
Sbjct: 453 --NCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYL 510

Query: 535 SNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGN 594
            +N F+G I       ++    L+GL++  N L+G IP+     + L VL LSNNKFSG 
Sbjct: 511 HSNGFTGRIPR----EMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQ 566

Query: 595 LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRM 654
           +P     + SL +L L+ N+ +G IP SLK+ + L + D+ +N   G IP         M
Sbjct: 567 IPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNM 626

Query: 655 -LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV 713
            L L   +N   G +PK +  L  +Q +DL++N  SG+IP+ +     + T         
Sbjct: 627 QLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFT--------- 677

Query: 714 YREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRIPESIGTMRALESV 772
                     LD S+NN SG I  EV   +  + S+N S N+F+G IP+S G M  L S+
Sbjct: 678 ----------LDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSL 727

Query: 773 DFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGAPL 831
           D S N L+GEIP+S+++L+ L HL L++NNL G +P S   ++ NAS   GN DLCG+  
Sbjct: 728 DLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKK 787

Query: 832 P-KNCTMFMK 840
           P K CT+  K
Sbjct: 788 PLKPCTIKQK 797

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  289 bits (739), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 269/859 (31%), Positives = 399/859 (46%), Gaps = 132/859 (15%)

Query: 53  LASW-TGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYL 111
           L  W +G    C W GV CG     I+ LNL           L G ++P++    +L ++
Sbjct: 50  LRDWNSGSPSYCNWTGVTCGGR--EIIGLNLSGLG-------LTGSISPSIGRFNNLIHI 100

Query: 112 DLSSNDFQGV------------------------QIPRFIGSMRNLRYLNLSDTQFVGMI 147
           DLSSN   G                          IP  +GS+ NL+ L L D +  G I
Sbjct: 101 DLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTI 160

Query: 148 PPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSL 207
           P   GNL +LQ L L+S          L+GL     +  R   L +    ++  N L   
Sbjct: 161 PETFGNLVNLQMLALAS--------CRLTGL-----IPSRFGRLVQLQTLILQDNEL--- 204

Query: 208 LELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLR 267
                             PIP  + N TSL       N  N S+P  L +   L+ LNL 
Sbjct: 205 ----------------EGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLG 248

Query: 268 NNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEI 327
           +NS  G I   +G+L S+ +L+L I   LQG IP+ +    NL++++L   +L+  I E 
Sbjct: 249 DNSFSGEIPSQLGDLVSIQYLNL-IGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEE 307

Query: 328 L-------------DIFSG------CVSN-GLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
                         +  SG      C +N  L+ L +  + + G +  ++   ++L  L+
Sbjct: 308 FWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLD 367

Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVK 427
           L+NN++ G IP+S  QL  L  L + +N L GTLS    +NLT L  F +  N L  +V 
Sbjct: 368 LSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSS-SISNLTNLQEFTLYHNNLEGKVP 426

Query: 428 HDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRF--------- 478
            +     +L  + L+        P  + +   LQ ++   +R+S   P            
Sbjct: 427 KEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRL 486

Query: 479 --------------LKSASQLKFLDVGLNQFHGKI-SNLTKNTQLLFLSVNSNNMSGPLP 523
                         L +  Q+  +D+  NQ  G I S+    T L    + +N++ G LP
Sbjct: 487 HLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLP 546

Query: 524 --LVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQN 580
             L++  NL  ++FS+N F+GSIS  LC     + S     +T+N  +G+IP       N
Sbjct: 547 DSLINLKNLTRINFSSNKFNGSISP-LC----GSSSYLSFDVTENGFEGDIPLELGKSTN 601

Query: 581 LKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFV 640
           L  L+L  N+F+G +P + G I+ L  L + +N LSG IP+ L  C  L  +D++ N   
Sbjct: 602 LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLS 661

Query: 641 GNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLT 700
           G IPTW G +   +  L L SN+F G LP  I  L  +  L L  N+L+G+IP+ I NL 
Sbjct: 662 GVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQ 720

Query: 701 GM----VTVKSFTGSVVYREILPLVSL--LDISRNNFSGEILSEVTNLKALQS-INFSFN 753
            +    +     +G +    I  L  L  L +SRN  +GEI  E+  L+ LQS ++ S+N
Sbjct: 721 ALNALNLEENQLSGPLP-STIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYN 779

Query: 754 TFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQL 813
            FTGRIP +I T+  LES+D S NQL GE+P  +  +  L +LNLS NNL GK  L  Q 
Sbjct: 780 NFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGK--LKKQF 837

Query: 814 QSFNASSFAGN-DLCGAPL 831
             + A +F GN  LCG+PL
Sbjct: 838 SRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  244 bits (623), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 257/861 (29%), Positives = 390/861 (45%), Gaps = 119/861 (13%)

Query: 32  LETERRALLRFKQDLQDPSN-RLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNP 90
           L +E  +L+ FK+ L++PS     + +     C W GV C                    
Sbjct: 23  LSSETTSLISFKRSLENPSLLSSWNVSSSASHCDWVGVTC-------------------- 62

Query: 91  RSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ 150
              L+G+VN           L L S   +G QIP+ I S++NLR L L+  QF G IPP+
Sbjct: 63  ---LLGRVN----------SLSLPSLSLRG-QIPKEISSLKNLRELCLAGNQFSGKIPPE 108

Query: 151 LGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL 210
           + NL  LQ LDLS N L       LS L  L +LDL   + S +        +LP+L  L
Sbjct: 109 IWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFI-SLPALSSL 167

Query: 211 RLSNCSLH-HFP-----------------TLASPIPRGLQNLTSLKHLDLDSNHFNSSIP 252
            +SN SL    P                 + +  IP  + N++ LK+    S  FN  +P
Sbjct: 168 DVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLP 227

Query: 253 DWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKS 312
             + K   L  L+L  N L+ +I  + G L ++S L+L ++  L G IP  + N  +LKS
Sbjct: 228 KEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNL-VSAELIGLIPPELGNCKSLKS 286

Query: 313 VNLRGVHLSQ----EISEI--------LDIFSGCVSN------GLESLDMRSSSIYGHLT 354
           + L    LS     E+SEI         +  SG + +       L+SL + ++   G + 
Sbjct: 287 LMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIP 346

Query: 355 DQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSW 414
            ++     L  L+LA+N + G IP       +L  + +  N L+GT+ E  F   + L  
Sbjct: 347 HEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEV-FDGCSSLGE 405

Query: 415 FRVGGNQLTFEVKHD-WIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDI 473
             +  NQ+   +  D W  P  L+AL L +       P+ L    +L       +R+   
Sbjct: 406 LLLTNNQINGSIPEDLWKLP--LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGY 463

Query: 474 FPIRFLKSASQLKFLDVGLNQFHGKIS-NLTKNTQLLFLSVNSNNMSGPLPLV---SSNL 529
            P   + +A+ LK L +  NQ  G+I   + K T L  L++N+N   G +P+     ++L
Sbjct: 464 LPAE-IGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSL 522

Query: 530 VYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSY----------- 578
             LD  +N+  G I      ++     L+ L L+ N L G IP    +Y           
Sbjct: 523 TTLDLGSNNLQGQIPD----KITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSF 578

Query: 579 -QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN 637
            Q+  +  LS N+ SG +P  LG    LV + L  N LSG+IP SL   T L  LD+  N
Sbjct: 579 LQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGN 638

Query: 638 EFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCIS 697
              G+IP   G    ++  L L +NQ +G +P++   L  L  L+L  N L G +P  + 
Sbjct: 639 ALTGSIPKEMGNSL-KLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLG 697

Query: 698 NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTG 757
           NL  +                     +D+S NN SGE+ SE++ ++ L  +    N FTG
Sbjct: 698 NLKELTH-------------------MDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTG 738

Query: 758 RIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFN 817
            IP  +G +  LE +D S N LSGEIP  +  L  L  LNL+ NNL G++P     Q  +
Sbjct: 739 EIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPS 798

Query: 818 ASSFAGN-DLCGAPLPKNCTM 837
            +  +GN +LCG  +  +C +
Sbjct: 799 KALLSGNKELCGRVVGSDCKI 819

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  229 bits (583), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 211/653 (32%), Positives = 308/653 (47%), Gaps = 75/653 (11%)

Query: 215 CSLHHFPTL-------ASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLR 267
           C LH    L       + PIP+ L    SL+ LDL +N F+  IP  L     L+ L L 
Sbjct: 88  CKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLC 147

Query: 268 NNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEI-SE 326
            N L G+I   IGNL+S+  L +  N  L G IP SMA    L+ +       S  I SE
Sbjct: 148 ENYLFGSIPRQIGNLSSLQELVIYSN-NLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSE 206

Query: 327 ILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLST 386
           I    SGC S  L+ L +  + + G L  QL + +NL  L L  N + G IP S G +S 
Sbjct: 207 I----SGCES--LKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISR 260

Query: 387 LRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHD----------------- 429
           L  L +++N   G++       LTK+    +  NQLT E+  +                 
Sbjct: 261 LEVLALHENYFTGSIPR-EIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQL 319

Query: 430 --WIPP-----FQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFP--IRFLK 480
             +IP        L  L L    +    P+ L     L+ L+L  +R++   P  ++FL 
Sbjct: 320 TGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLP 379

Query: 481 SASQLKFLDVGLNQFHGKISNLTK-NTQLLFLSVNSNNMSGPLP---LVSSNLVYLDFSN 536
               L+  D   NQ  GKI  L    +    L +++N++SGP+P        L+ L   +
Sbjct: 380 YLVDLQLFD---NQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGS 436

Query: 537 NSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP 596
           N  SG+I   L       KSL  L L DN L G +P    + QNL  L+L  N  SGN+ 
Sbjct: 437 NKLSGNIPRDL----KTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNIS 492

Query: 597 NSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLV 656
             LG + +L  L L  N  +G+IP  + N T +   ++  N+  G+IP   G   + +  
Sbjct: 493 ADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVT-IQR 551

Query: 657 LILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716
           L L  N+F G + + +  L +L+IL L+DN L+G IP    +LT ++             
Sbjct: 552 LDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLME------------ 599

Query: 717 ILPLVSLLDISRNNFSGEILSEVTNLKALQ-SINFSFNTFTGRIPESIGTMRALESVDFS 775
                  L +  N  S  I  E+  L +LQ S+N S N  +G IP+S+G ++ LE +  +
Sbjct: 600 -------LQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLN 652

Query: 776 VNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLC 827
            N+LSGEIP S+ +L  L   N+SNNNL G +P +   Q  ++S+FAGN  LC
Sbjct: 653 DNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  228 bits (580), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 225/765 (29%), Positives = 349/765 (45%), Gaps = 64/765 (8%)

Query: 34  TERRALLRFKQDLQDPSNRLASWTGDGD------CCTWAGVACGNVTGHILELNLRNPST 87
            E  ALL++K    + S++L+SW  D +      C +W GV+C N  G I ELNL N   
Sbjct: 32  AEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSC-NSRGSIEELNLTNTGI 89

Query: 88  SNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMI 147
                          + L +L+Y+DLS N   G   P+F G++  L Y +LS     G I
Sbjct: 90  EGTFQDF------PFISLSNLAYVDLSMNLLSGTIPPQF-GNLSKLIYFDLSTNHLTGEI 142

Query: 148 PPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSL 207
            P LGNL +L  L L  NYL       L  +  +  L L    L         T ++PS 
Sbjct: 143 SPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKL---------TGSIPSS 193

Query: 208 LELRLSNCSLHHFPT--LASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLN 265
           L   L N  + +     L   IP  L N+ S+  L L  N    SIP  L     L  L 
Sbjct: 194 LG-NLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLY 252

Query: 266 LRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEIS 325
           L  N L G I   IGN+ S++ L LS N  L G IP S+ N  NL  ++L   +L+  I 
Sbjct: 253 LYENYLTGVIPPEIGNMESMTNLALSQN-KLTGSIPSSLGNLKNLTLLSLFQNYLTGGIP 311

Query: 326 EILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS 385
             L      +      L++ ++ + G +   LG  +NL  L L  N + G+IP   G + 
Sbjct: 312 PKLGNIESMI-----DLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNME 366

Query: 386 TLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCY 445
           ++ +LQ+ +NKL G++    F NL  L++  +  N LT  +  +      ++ L L    
Sbjct: 367 SMIDLQLNNNKLTGSIPS-SFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNK 425

Query: 446 VGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKI-SNLTK 504
           +    P    +   L+ L L  + +S   P   + ++S L  L +  N F G     + K
Sbjct: 426 LTGSVPDSFGNFTKLESLYLRVNHLSGAIPPG-VANSSHLTTLILDTNNFTGFFPETVCK 484

Query: 505 NTQLLFLSVNSNNMSGPLPLV---SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLK 561
             +L  +S++ N++ GP+P       +L+   F  N F+G I  F  + +     L  + 
Sbjct: 485 GRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDI--FEAFGI--YPDLNFID 540

Query: 562 LTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPI 621
            + N   GEI   W     L  L +SNN  +G +P  + ++T LV L L  N L G++P 
Sbjct: 541 FSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPE 600

Query: 622 SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQIL 681
           ++ N T L+ L ++ N+  G +P       + +  L L SN F   +P+T      L  +
Sbjct: 601 AIGNLTNLSRLRLNGNQLSGRVPAGL-SFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDM 659

Query: 682 DLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTN 741
           +L+ N   G+IP+ +S LT +                     LD+S N   GEI S++++
Sbjct: 660 NLSRNKFDGSIPR-LSKLTQLTQ-------------------LDLSHNQLDGEIPSQLSS 699

Query: 742 LKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQS 786
           L++L  ++ S N  +G IP +   M AL +VD S N+L G +P +
Sbjct: 700 LQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDT 744

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  228 bits (580), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 209/681 (30%), Positives = 314/681 (46%), Gaps = 116/681 (17%)

Query: 234 LTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
           L  L+HLDL + +    IP  L   S L  +NL  N   G I  +IGNL  +  L L+ N
Sbjct: 109 LQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANN 168

Query: 294 IGLQGRIPRSMANFCNLKSVNLRGVHLSQEISE-ILDIFSGCVSNGLESLDMRSSSIYGH 352
           + L G IP S+ N   L ++ L    L  +I + I D+        L +L + S+++ G 
Sbjct: 169 V-LTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDL------KQLRNLSLASNNLIGE 221

Query: 353 LTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
           +   LG   NLV L L +N +VG +P S G L  LR +   +N L+G +    FANLTKL
Sbjct: 222 IPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIP-ISFANLTKL 280

Query: 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGL-HNCYVGSRFPQWLHSQKHLQYLNLLNSRIS 471
           S F +  N  T     D      L    + +N + G  FP+ L     L+ + L  ++ +
Sbjct: 281 SIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGP-FPKSLLLIPSLESIYLQENQFT 339

Query: 472 DIFPIRFLKSASQLKFLDV--GLNQFHGKISN-------------------------LTK 504
              PI F  ++S  K  D+  G N+ HG I                           ++K
Sbjct: 340 G--PIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISK 397

Query: 505 NTQLLFLSVNSNNMSGPLP---------LVSSN--------------LVYLDFSNNSFSG 541
              LL L ++ NN+ G +P         ++S N              +  LD ++NSF G
Sbjct: 398 LVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQG 457

Query: 542 SISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQ-NLKVLKLSNNKFSGNLPNSLG 600
            I + +C    +  SL  L L++N   G IP C  ++  ++K L L +N FSG LP+   
Sbjct: 458 PIPYMIC----KLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFS 513

Query: 601 SITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR 660
             T LV L +  N+L GK P SL NC AL  ++V+ N+     P+W  E    + VL LR
Sbjct: 514 KATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLR 572

Query: 661 SNQFHGPLPKTICDLAF--LQILDLADNNLSGAIPKC-ISNLTGMVTVKSFTGSVV---- 713
           SN+F+GPL      + F  L+I+D++ NN SG +P    SN   M T+       +    
Sbjct: 573 SNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFW 632

Query: 714 ------YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMR 767
                 Y E+  +   +D+S               +  ++I+FS N   G IPES+G ++
Sbjct: 633 RYADSYYHEMEMVNKGVDMSFERIR----------RDFRAIDFSGNKINGNIPESLGYLK 682

Query: 768 ------------------------ALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL 803
                                    LE++D S N+LSG+IPQ +++L+FL+++N S+N L
Sbjct: 683 ELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLL 742

Query: 804 TGKIPLSTQLQSFNASSFAGN 824
            G +P  TQ Q    SSF  N
Sbjct: 743 QGPVPRGTQFQRQKCSSFLDN 763

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  223 bits (568), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 199/667 (29%), Positives = 319/667 (47%), Gaps = 41/667 (6%)

Query: 184 LDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLD 243
           LDL S+NLS      + + ++  L+ L   N +   +  L   IPR + N + L+ + L+
Sbjct: 90  LDLSSMNLSG-----IVSPSIGGLVNLVYLNLA---YNALTGDIPREIGNCSKLEVMFLN 141

Query: 244 SNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRS 303
           +N F  SIP  + K S L   N+ NN L G + + IG+L ++  L    N  L G +PRS
Sbjct: 142 NNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTN-NLTGPLPRS 200

Query: 304 MANFCNLKSVNLRGVHLSQEI-SEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRN 362
           + N   L +        S  I +EI      C++  L+ L +  + I G L  ++G    
Sbjct: 201 LGNLNKLTTFRAGQNDFSGNIPTEI----GKCLN--LKLLGLAQNFISGELPKEIGMLVK 254

Query: 363 LVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQL 422
           L  + L  N   G IP+  G L++L  L +Y N L G +      N+  L    +  NQL
Sbjct: 255 LQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPS-EIGNMKSLKKLYLYQNQL 313

Query: 423 TFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSA 482
              +  +     +++ +      +    P  L     L+ L L  ++++ I P   L   
Sbjct: 314 NGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNE-LSKL 372

Query: 483 SQLKFLDVGLNQFHGKI----SNLTKNTQLLFLSVNSNNMSGPLPL---VSSNLVYLDFS 535
             L  LD+ +N   G I     NLT   QL       N++SG +P    + S L  +DFS
Sbjct: 373 RNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFH---NSLSGVIPQGLGLYSPLWVVDFS 429

Query: 536 NNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNL 595
            N  SG I  F+C + N    L  L L  N + G IP   +  ++L  L++  N+ +G  
Sbjct: 430 ENQLSGKIPPFICQQSN----LILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQF 485

Query: 596 PNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRML 655
           P  L  + +L  + L +NR SG +P  +  C  L  L +  N+F  N+P     + S ++
Sbjct: 486 PTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEI-SKLSNLV 544

Query: 656 VLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK----SFTGS 711
              + SN   GP+P  I +   LQ LDL+ N+  G++P  + +L  +  ++     F+G+
Sbjct: 545 TFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGN 604

Query: 712 VVYR-EILPLVSLLDISRNNFSGEILSEVTNLKALQ-SINFSFNTFTGRIPESIGTMRAL 769
           + +    L  ++ L +  N FSG I  ++  L +LQ ++N S+N F+G IP  IG +  L
Sbjct: 605 IPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLL 664

Query: 770 ESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGND-LCG 828
             +  + N LSGEIP +  +L+ L   N S NNLTG++P +   Q+   +SF GN  LCG
Sbjct: 665 MYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCG 724

Query: 829 APLPKNC 835
             L ++C
Sbjct: 725 GHL-RSC 730

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  219 bits (557), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 192/621 (30%), Positives = 308/621 (49%), Gaps = 29/621 (4%)

Query: 223 LASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNL 282
           L+  IP+ + N +SL+ L L++N F+  IP  + K   LE L + NN + G++   IGNL
Sbjct: 109 LSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNL 168

Query: 283 TSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEI-SEILDIFSGCVSNGLES 341
            S+S L ++ +  + G++PRS+ N   L S       +S  + SEI     GC S  L  
Sbjct: 169 LSLSQL-VTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEI----GGCES--LVM 221

Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
           L +  + + G L  ++G  + L  + L  N   G IP      ++L  L +Y N+L G +
Sbjct: 222 LGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPI 281

Query: 402 SEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQ 461
            +    +L  L +  +  N L   +  +       + +      +    P  L + + L+
Sbjct: 282 PK-ELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLE 340

Query: 462 YLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLF-LSVNSNNMSG 520
            L L  ++++   P+  L +   L  LD+ +N   G I    +  + LF L +  N++SG
Sbjct: 341 LLYLFENQLTGTIPVE-LSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSG 399

Query: 521 PLPLV---SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMS 577
            +P      S+L  LD S+N  SG I  +LC   N       L L  N L G IP    +
Sbjct: 400 TIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMII----LNLGTNNLSGNIPTGITT 455

Query: 578 YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN 637
            + L  L+L+ N   G  P++L    ++  + L +NR  G IP  + NC+AL  L + +N
Sbjct: 456 CKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADN 515

Query: 638 EFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCIS 697
            F G +P   G   S++  L + SN+  G +P  I +   LQ LD+  NN SG +P  + 
Sbjct: 516 GFTGELPREIG-MLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVG 574

Query: 698 NLTGMVTVK----SFTGSV-VYREILPLVSLLDISRNNFSGEILSEVTNLKALQ-SINFS 751
           +L  +  +K    + +G++ V    L  ++ L +  N F+G I  E+ +L  LQ ++N S
Sbjct: 575 SLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLS 634

Query: 752 FNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLST 811
           +N  TG IP  +  +  LE +  + N LSGEIP S ++L+ L   N S N+LTG IPL  
Sbjct: 635 YNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL-- 692

Query: 812 QLQSFNASSFAGND-LCGAPL 831
            L++ + SSF GN+ LCG PL
Sbjct: 693 -LRNISMSSFIGNEGLCGPPL 712

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  219 bits (557), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 236/812 (29%), Positives = 356/812 (43%), Gaps = 108/812 (13%)

Query: 33  ETERRALLRFKQDLQDPSNRLASW--TGDGDCCTWAGVACGNVTGHILELNLRNPSTSNP 90
           + E  AL  FK +L DP   L SW  +     C W GV C N    + E+ L       P
Sbjct: 26  QAEIDALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGCTN--HRVTEIRL-------P 76

Query: 91  RSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ 150
           R  L G+++  +  L+ L  L L SN F G  IP  +     L  + L      G +PP 
Sbjct: 77  RLQLSGRISDRISGLRMLRKLSLRSNSFNGT-IPTSLAYCTRLLSVFLQYNSLSGKLPPA 135

Query: 151 LGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPS-LLE 209
           + NL+ L+  +++ N L  +    L   S L+ LD+ S   S           +PS L  
Sbjct: 136 MRNLTSLEVFNVAGNRLSGEIPVGLP--SSLQFLDISSNTFS---------GQIPSGLAN 184

Query: 210 LRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNN 269
           L         +  L   IP  L NL SL++L LD N    ++P  +   S L  L+   N
Sbjct: 185 LTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASEN 244

Query: 270 SLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLS-QEISEIL 328
            + G I  A G L  +  L LS N    G +P S+  FCN    +L  V L     S+I+
Sbjct: 245 EIGGVIPAAYGALPKLEVLSLS-NNNFSGTVPFSL--FCN---TSLTIVQLGFNAFSDIV 298

Query: 329 --DIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLST 386
             +  + C + GL+ LD++ + I G     L    +L  L+++ N   G IP   G L  
Sbjct: 299 RPETTANCRT-GLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKR 357

Query: 387 LRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKH--DWIPPFQLVALGLHNC 444
           L EL++ +N L G +          L      GN L  ++     ++   ++++LG  N 
Sbjct: 358 LEELKLANNSLTGEIP-VEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLG-RNS 415

Query: 445 YVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTK 504
           + G   P  + + + L+ LNL  + ++  FP+  + + + L  LD+  N+F G +     
Sbjct: 416 FSG-YVPSSMVNLQQLERLNLGENNLNGSFPVELM-ALTSLSELDLSGNRFSGAV----- 468

Query: 505 NTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTD 564
                   V+ +N+        SNL +L+ S N FSG I       V     L  L L+ 
Sbjct: 469 -------PVSISNL--------SNLSFLNLSGNGFSGEIPA----SVGNLFKLTALDLSK 509

Query: 565 NYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLK 624
             + GE+P       N++V+ L  N FSG +P    S+ SL ++ L  N  SG+IP +  
Sbjct: 510 QNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFG 569

Query: 625 NCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLA 684
               L SL + +N   G+IP   G   S + VL LRSN+  G +P  +  L  L++LDL 
Sbjct: 570 FLRLLVSLSLSDNHISGSIPPEIGN-CSALEVLELRSNRLMGHIPADLSRLPRLKVLDLG 628

Query: 685 DNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKA 744
            NNLSG IP  IS  + + ++                       N+ SG I    + L  
Sbjct: 629 QNNLSGEIPPEISQSSSLNSLSL-------------------DHNHLSGVIPGSFSGLSN 669

Query: 745 LQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
           L  ++ S N  TG IP S+  +                     S+L +    N+S+NNL 
Sbjct: 670 LTKMDLSVNNLTGEIPASLALIS--------------------SNLVY---FNVSSNNLK 706

Query: 805 GKIPLSTQLQSFNASSFAGN-DLCGAPLPKNC 835
           G+IP S   +  N S F+GN +LCG PL + C
Sbjct: 707 GEIPASLGSRINNTSEFSGNTELCGKPLNRRC 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	840
224072885	1024	predicted protein [Populus trichocarpa]	0.970	0.795	0.480	0.0
315436720	1020	verticillium wilt resistance-like protei	0.985	0.811	0.448	0.0
255543977	1075	serine/threonine-protein kinase bri1, pu	0.989	0.773	0.446	0.0
350284739	978	receptor-like protein [Malus x domestica	0.951	0.816	0.459	0.0
350284749	980	receptor-like protein [Malus baccata]	0.982	0.841	0.450	0.0
350284751	980	receptor-like protein [Malus baccata]	0.95	0.814	0.455	0.0
14330716	980	HcrVf2 protein [Malus floribunda] gi|350	0.95	0.814	0.455	0.0
350284753	915	receptor-like protein [Malus micromalus]	0.951	0.873	0.454	0.0
209970631	962	HcrVf4 [Malus floribunda]	0.951	0.830	0.454	0.0
350284761	915	receptor-like protein [Malus micromalus]	0.951	0.873	0.453	0.0

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/931 (48%), Positives = 582/931 (62%), Gaps = 116/931 (12%)

Query: 22  FRGSSYHVGCLETERRALLRFKQDLQDPSNRLASWTG-DGDCCTWAGVACGNVTGHILEL 80
           F   S+  GC + ER ALL+FK DL+DPSNRLASW G  GDCCTW GV C NVTGH++EL
Sbjct: 28  FSYGSFTQGCSQIERDALLKFKHDLKDPSNRLASWAGFGGDCCTWRGVICDNVTGHVIEL 87

Query: 81  NLRNPSTSNP--------------RSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRF 126
            LR+ S ++               + +L G++NP+L+ LKHL YLDL +NDF GVQIP+F
Sbjct: 88  RLRSISFADYLASSGASTQYEDYLKLILSGRINPSLVSLKHLRYLDLRNNDFGGVQIPKF 147

Query: 127 IGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY--LYVDNVWWLSGLSFLEHL 184
           IG + +L++L+LSD  F G IP  LGNLSDL +L+L   Y    V+N+ WLS LS LE L
Sbjct: 148 IGLIGSLKHLDLSDAGFAGTIPHGLGNLSDLNYLNLHDYYSQFNVENLNWLSQLSSLEFL 207

Query: 185 DLRSVNLSKASDWLMATNTLPSLLELRLSNC----------------------------- 215
           DL  V+L    +WL   NTLPSL+EL LS C                             
Sbjct: 208 DLSLVHLGNVFNWLEVINTLPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYVDES 267

Query: 216 --SLHHFPTLAS-----------------PIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY 256
             S+ +FP   S                 PIP GLQNLT LK LDL  NHF+SSIP+WLY
Sbjct: 268 AISMLNFPRWVSHLKTLLSLNLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSIPEWLY 327

Query: 257 KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN--IGLQGRIPRSMANFCNLKSVN 314
            F  L+ LNL +N+LQG +S AIGN+TS+  LDLS+N  +  +G IP S    CNL++++
Sbjct: 328 GFEHLKLLNLGSNNLQGVLSSAIGNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLS 387

Query: 315 LRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIV 374
           L  V L+Q+I+E+L++  GCVS  +ESLD+    ++G LT+ LG+FRNL  L L +NSI 
Sbjct: 388 LSNVKLNQDIAEVLEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSIS 447

Query: 375 GLIPESFGQLSTLRELQIYDNKLNGTL------------------------SEFHFANLT 410
           G IP + G+L +LR L + DNKLNGTL                        SE HFANL 
Sbjct: 448 GPIPMALGELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHFANLK 507

Query: 411 KLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRI 470
            L  F   GNQL   V  DWIPP QLV + L +  VG +FP+W+   +HL YL++ NS I
Sbjct: 508 NLRNFSAAGNQLNLRVSPDWIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSI 566

Query: 471 SDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTK---NTQLLFLSVNSNNMSGPLPLVSS 527
           S   PI F   + ++++L++  NQ  G I +  K         + ++SN   GPLP + S
Sbjct: 567 SSTIPIWFWTMSFRMEYLNLSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFS 626

Query: 528 NLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLS 587
           N+  LD SNNSFSGS+ +FLC++++E K+++ L L +N L G IPDCW S+Q L  +KLS
Sbjct: 627 NVGALDLSNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLS 686

Query: 588 NNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWF 647
           NNK SGN+P+S+G+++ L  L++R + LSGK+PISLKNCT L +LDV ENE VG++P W 
Sbjct: 687 NNKLSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWI 746

Query: 648 GERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKS 707
           G+RFS M+VL +R+N+FHG +P+ +C+LA LQILDLA N LS +IP C + L+ M T   
Sbjct: 747 GKRFSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATRND 806

Query: 708 FTGS---------------------VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQ 746
             G                      V Y  IL  V  +D+S N   GEI  EVT L  LQ
Sbjct: 807 SLGKIYLDSGSSTFDNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQ 866

Query: 747 SINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGK 806
           S+N S N+ TGRIPE IG++R LES+DFSVNQLSGEIPQSMS LTFL+HLNLS+N L G+
Sbjct: 867 SLNLSQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGR 926

Query: 807 IPLSTQLQSFNASSFAGNDLCGAPLPKNCTM 837
           IP  TQLQSF  SSF+GN+LCG PL KNC++
Sbjct: 927 IPSGTQLQSFGPSSFSGNELCGPPLSKNCSV 957

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/938 (44%), Positives = 577/938 (61%), Gaps = 110/938 (11%)

Query: 6   VFACLLLELLVISISFFRGSSYHVGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTW 65
           +F  LL+E    +  +   ++ +V C E ER+ALL+ KQDL DPS RLASW  + +CC W
Sbjct: 14  IFLALLIE--TSTFEYVCAANRNVSCPEVERQALLKLKQDLIDPSGRLASWGTNLNCCNW 71

Query: 66  AGVACGNVTGHILELNLRNP----------STSNPRSMLVGKVNPALLDLKHLSYLDLSS 115
           +GV C N+TG++++L LRNP          S +  +    GK+NP+LLDLKHL YLDLS 
Sbjct: 72  SGVICDNLTGNVIQLRLRNPLDPYNGFYIPSEAYAKMWFSGKINPSLLDLKHLRYLDLSG 131

Query: 116 NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLS--SNYLYVDNVW 173
           ++F G+QIP F+GSM  LRYLNLS   F G++PPQLGNL++L  LDL   S+ +Y +N+ 
Sbjct: 132 SNFGGIQIPEFLGSMHTLRYLNLSAAGFGGVVPPQLGNLTNLHVLDLHDFSSLVYAENLQ 191

Query: 174 WLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLA--------- 224
           WLS L  L+HLDL SVNLSKASDW   TNTLPSL+E+ LS C LH  P  A         
Sbjct: 192 WLSHLVKLKHLDLSSVNLSKASDWFQVTNTLPSLVEIHLSGCQLHRLPLQADVNFSSLSI 251

Query: 225 ----------------------------------SPIPRGLQNLTSLKHLDLDSNHFNSS 250
                                               +P GL++L+SL++L+L  N+F S+
Sbjct: 252 LDLSSNSFSNPLIPGWIFKLNSLLSLDLSHNNFQGQLPHGLRSLSSLRYLNLYWNNFKSA 311

Query: 251 IPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNL 310
           IP WLY  + LE LNL +N   G+IS+   NLTS++ LDLS N  L G +P SM + C+L
Sbjct: 312 IPSWLYGLTSLEFLNLGSNYFHGSISNGFQNLTSLTTLDLSDN-ELTGAVPNSMGSLCSL 370

Query: 311 KSVNLRGVHLSQEISEILDIFS--GCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
           K + L G+HLS+++SEIL   S  GC+ NGLESL + S  I+GHLTD++  F+NL  L+L
Sbjct: 371 KKIKLSGLHLSRDLSEILQALSSPGCLLNGLESLYLDSCEIFGHLTDRILLFKNLADLSL 430

Query: 369 ANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL------------------------SEF 404
           + NSI G IP S G L++LR L +  N++NGTL                        SE 
Sbjct: 431 SRNSISGSIPASLGLLASLRTLDLSQNRVNGTLPESIGQLWKMEKLWLSHNMLEGVVSEV 490

Query: 405 HFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLN 464
           HFANLT+L  F+  GN L  E   +W+PPFQL  + L + ++G +FP WL SQ+   YL+
Sbjct: 491 HFANLTRLRLFQASGNPLVLEASPEWVPPFQLGVMALSSWHLGPKFPSWLRSQRDFVYLD 550

Query: 465 LLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNT---QLLFLSVNSNNMSGP 521
           +  + I D FP  F   ++    L++  NQ +G++ +    +    L+++ ++ N+  GP
Sbjct: 551 ISVTGIIDTFPNWFWNLSTIYFSLNLSHNQIYGELPHRIGTSPVADLVYVDLSFNHFDGP 610

Query: 522 LPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNL 581
           LP +SS +  LD S+N FSG IS+ LC ++ E   LE L L DN+L GEIPDCWM++ N+
Sbjct: 611 LPCLSSKVNTLDLSSNLFSGPISNLLCCKMEEPYWLETLHLADNHLSGEIPDCWMNWPNM 670

Query: 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG 641
             + L NN  SG +P+S+GS+  L  L+LRKN LSG +P SL+NCT+L ++D+ EN FVG
Sbjct: 671 VSVDLENNSLSGVIPSSMGSLNLLQSLHLRKNNLSGVLPSSLQNCTSLLAIDLGENHFVG 730

Query: 642 NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG 701
           NIP W GE+ S  +++ L SN+F G +P  +C L++L ILDLA NNLSG IPKC  NL+ 
Sbjct: 731 NIPGWIGEKLSDSIIISLGSNRFQGQIPDNLCSLSYLTILDLAHNNLSGTIPKCFMNLSA 790

Query: 702 MVTVKSFTGSVV-----------------------YREILPLVSLLDISRNNFSGEILSE 738
           M   ++ +  +                        Y   L LV+ +D+S NN +GEI + 
Sbjct: 791 MAANQNSSNPISYAFGHFGTSLETLLLMIKGILLEYSSTLQLVTSMDLSDNNLAGEIPAG 850

Query: 739 VTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNL 798
           +T+L  L+ +N S N   GRIP++IG +R LES+D S NQL GEIP SMS+LTFL++LNL
Sbjct: 851 MTDLLGLRFLNLSNNQLKGRIPKNIGNLRLLESIDLSRNQLRGEIPPSMSALTFLSYLNL 910

Query: 799 SNNNLTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNCT 836
           S NNLTGKIP STQLQSF+ SS+ GN LCG PL + C+
Sbjct: 911 SENNLTGKIPSSTQLQSFDISSYDGNHLCGPPLLEICS 948

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/996 (44%), Positives = 588/996 (59%), Gaps = 165/996 (16%)

Query: 2    SGILVFACLLLELLVISISFFRGSSYHVGCLETERRALLRFKQDLQDPSNRLASWTGDGD 61
            + I V   L L  L++SI  F     + GC+++ER ALL FK  L D SN+LA+W GDGD
Sbjct: 11   TNISVITILFLWSLLLSI--FPVGFCNAGCIQSEREALLNFKLHLSDTSNKLANWVGDGD 68

Query: 62   CCTWAGVACGNVTGHILELNLRNPSTSN--------------------PRSMLVGKVNPA 101
            CC W+GV C N TGH+LEL+L  PS S                      R+ L GK++P+
Sbjct: 69   CCRWSGVICHNSTGHVLELHLGTPSFSEYTGPGSFYSQQAASLSVEYYARTALAGKISPS 128

Query: 102  LLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLD 161
            LL+LK+L YLDLS+N+F+G++IP+F+GSM +LRYLNLS+  F GMIPPQLGNLS+LQ+LD
Sbjct: 129  LLNLKYLRYLDLSNNNFEGIRIPKFLGSMESLRYLNLSNAGFGGMIPPQLGNLSNLQYLD 188

Query: 162  L--------SSNY---LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL 210
            L         + Y   ++V+N+ WLS LS L+ LDL  VNL  + DWL   N+LPSLL+L
Sbjct: 189  LRVGDVHGFRARYTFNMHVENLHWLSSLSSLKFLDLSYVNL-YSFDWLNVINSLPSLLQL 247

Query: 211  RLSNCSLH----------HFPTLA----------SPIPRGLQNLT-SLKHLDLDSNHFNS 249
             LS C L           +F +LA           PIP  LQNLT SLK LDL  N FNS
Sbjct: 248  HLSRCQLGGASFPSTVNLNFSSLAILDLSVNDFQGPIPNSLQNLTSSLKELDLGYNSFNS 307

Query: 250  SIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCN 309
            S+P+WLY F+ LE L+L +N LQG IS  IGN+TS+  LDLS N+ + G IP S  + CN
Sbjct: 308  SLPNWLYGFTNLEFLSLNSNRLQGNISSLIGNMTSLITLDLSSNLAISGGIPTSFKHLCN 367

Query: 310  LKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLA 369
            L+S+ L  V LSQ+I+++L+I SGC+S+ LES  M S  + G+LTD LG F+NL +L+L+
Sbjct: 368  LRSLVLDTVTLSQKINDVLEILSGCISDELESFSMYSCQLSGYLTDDLGHFKNLASLDLS 427

Query: 370  NNSIVGLIPE-------------------------------------------------- 379
             NSI G IP+                                                  
Sbjct: 428  YNSISGPIPKSLRHLCNLRSLDLSGNRWSQEINDVLEILSDCPTNVLESLSLSDCELSGP 487

Query: 380  ---SFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKH-------- 428
               S G++++L  L +  NKLNGTL E  F  LT+L      GN L  EV          
Sbjct: 488  IPSSLGEMASLIRLSLSSNKLNGTLPE-SFGQLTRLEIAFFDGNLLEGEVTEVHFANLTK 546

Query: 429  -------------------DWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSR 469
                               +W PPFQL  L L +  +G +FP WLHS ++L+ L+L NS 
Sbjct: 547  LFIFDGSMMANGPVLRVGSNWTPPFQLHYLSLRSWKIGPQFPAWLHSLRYLEILDLSNSG 606

Query: 470  ISDIFPIRFLKSASQLKFLDVGLNQFHGKISN---LTKNTQLLFLSVNSNNMSGPLPLVS 526
            IS   P+ F   +S   + ++  NQ HG I N   ++ + ++    ++SNN  GP+P  S
Sbjct: 607  ISSTIPVWFWDMSSNFAYANLSHNQIHGVIPNVPVVSNDYRITMFDMSSNNFRGPVPYFS 666

Query: 527  SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKL 586
            SNL  LD S+NSF+GSI +FLCY++ E K +E L L  N L GEIPDCW+S+Q+L  + L
Sbjct: 667  SNLSALDLSSNSFTGSIINFLCYKMQEVKKMEVLNLGGNLLSGEIPDCWLSWQSLTAINL 726

Query: 587  SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTW 646
            SNNKF+GN+P S+G+++ L  ++   N LSG IP+S++NC  L +LD   N+ VG IP+W
Sbjct: 727  SNNKFTGNIPKSIGTLSFLESVHFANNDLSGDIPLSIQNCRKLFTLDFSGNKLVGKIPSW 786

Query: 647  FGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK 706
             G+    M++LILR N+ HG +P+ IC +A LQILDLADNN S  IP C SN +GMV V 
Sbjct: 787  IGKSIPDMIILILRGNKLHGQIPEEICRMASLQILDLADNNFSSMIPSCFSNFSGMVKVN 846

Query: 707  SFTGSVV--------------------------YREILPLVSLLDISRNNFSGEILSEVT 740
               GS+                           Y  IL  V  +D+S NN SGEI   +T
Sbjct: 847  DSFGSLTFDQSNVGPSPILIDSAILVIKGRVAEYSTILGFVKAIDLSNNNLSGEIPMNIT 906

Query: 741  NLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN 800
            +L  LQS++FS N+ TGRIP+ IG M++LES+DFS N L GEIP+S+SSLTFL+HLNLSN
Sbjct: 907  SLVGLQSLSFSQNSLTGRIPKDIGAMQSLESIDFSQNHLFGEIPESISSLTFLSHLNLSN 966

Query: 801  NNLTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNCT 836
            N LTGKIP  TQL+ F+ SSF  NDLCG PLP NC+
Sbjct: 967  NKLTGKIPSGTQLRGFDPSSFMDNDLCGPPLPLNCS 1002

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284739|gb|AEQ27741.1| receptor-like protein [Malus x domestica]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/875 (45%), Positives = 532/875 (60%), Gaps = 76/875 (8%)

Query: 31  CLETERRALLRFKQDLQDPSNRLASWTG--DGDCCTWAGVACGNVTGHILELNLRN-PST 87
           C E+ERRALL FKQDL+DP+NRLASW    D DCC+W  V C +VTGHI EL+L +  S 
Sbjct: 37  CKESERRALLMFKQDLKDPANRLASWVAEEDSDCCSWTRVVCDHVTGHIHELHLNSFDSD 96

Query: 88  SNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMI 147
               S   GK+NP+LL LKHL+YLDLS+N+FQG QIP F GSM +L +LNL+ + + G+I
Sbjct: 97  WEFNSFFGGKINPSLLSLKHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLAHSWYGGII 156

Query: 148 PPQLGNLSDLQFLDLSS-NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPS 206
           P +LGNL+ L++L+LSS + L V+N  W+SGLS L+HLDL  VNLSKASDWL  TN LPS
Sbjct: 157 PHKLGNLTSLRYLNLSSLDDLKVENPQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLPS 216

Query: 207 LLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNL 266
           L+EL +S C L   P L +P      N TSL  LDL  N FNS +P W++    L  L+L
Sbjct: 217 LVELIMSRCQLDQIPPLPTP------NFTSLVVLDLSRNSFNSLMPRWVFSLKNLVSLHL 270

Query: 267 RNNSLQGTISDAIGNLTSVSWLDLSINI-----------------------GLQGRIPRS 303
                QG I     N+TS+  +DLS N                         L G++P S
Sbjct: 271 SFCGFQGPIPSISQNITSLREIDLSFNSISLDPIPKWLFNQKILELSLESNQLTGQLPSS 330

Query: 304 MANFCNLKSVNLRGVHLSQEISEIL-------------DIFSGCVSNGLESL------DM 344
           + N   LK +NL G   +  I E L             + F G +S+ + +L      D+
Sbjct: 331 IQNMTGLKVLNLEGNDFNSTIPEWLYSLNNLESLLLSYNYFCGEISSSIGNLKSLRHFDL 390

Query: 345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEF 404
            S+SI G +   LG   +L  L+++ N + G   E  GQL  L +L I  N L G +SE 
Sbjct: 391 SSNSISGPIPMSLGNLSSLEKLDISGNQLNGTFIEVIGQLKMLMDLDISYNSLEGAMSEV 450

Query: 405 HFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLN 464
            F+NLTKL  F   GN  T +   DW+PPFQL  L L + ++G ++P WL +Q  L+ L+
Sbjct: 451 SFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELS 510

Query: 465 LLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPL 524
           L  + IS   P  F    SQ+++L++  NQ +G+I N+        + ++SN  +G LP+
Sbjct: 511 LSGTGISSTIPTWFWNLTSQVEYLNLSRNQLYGQIQNIVA-VPFSTVDLSSNQFTGALPI 569

Query: 525 VSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVL 584
           V ++L++LD SN+SFSGS+ HF C R +E + L  L L +N L G++PDCWMS+Q+L  L
Sbjct: 570 VPTSLMWLDLSNSSFSGSVFHFFCDRPDEPRKLGILHLGNNSLTGKVPDCWMSWQSLSFL 629

Query: 585 KLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIP 644
            L NN  +GN+P S+G +  +  LYLR N L G++P SL+NCT+L+ +D+ EN F G+IP
Sbjct: 630 NLENNNLTGNVPMSMGYLLYIQSLYLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIP 689

Query: 645 TWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMV- 703
           TW G+  S + VLILRSN+F G +P  +C L  LQILDLA N LSG IP+C  NL+ +  
Sbjct: 690 TWIGKSLSLLNVLILRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSALAN 749

Query: 704 -----TVKSFTGSVV-----------------YREILPLVSLLDISRNNFSGEILSEVTN 741
                +  S+ G V                  Y  IL  V  +D+S N   GEI  E+T 
Sbjct: 750 FSESFSPTSYWGEVASGLTENAILVTKGIEMEYSTILGFVKGMDLSCNFMYGEIPEELTG 809

Query: 742 LKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNN 801
           L ALQS+N S N FTGRIP  IG M  LES+DFS+NQL GEIP SM+ LTFL+HLNLS N
Sbjct: 810 LLALQSLNLSNNRFTGRIPSKIGNMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYN 869

Query: 802 NLTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNCT 836
           NLTG+IP STQLQS + SSF GN+LCGAPL KNC+
Sbjct: 870 NLTGRIPESTQLQSLDQSSFVGNELCGAPLNKNCS 904

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284749|gb|AEQ27746.1| receptor-like protein [Malus baccata]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/906 (45%), Positives = 541/906 (59%), Gaps = 81/906 (8%)

Query: 4   ILVFACLLLELLVISISFFRGS-SYHVGCLETERRALLRFKQDLQDPSNRLASWTG--DG 60
           IL+   L +  +  SI    G+  +   C  +ERRALL FKQDL+DP NRLASW    D 
Sbjct: 9   ILLTRFLAIATITFSIGLCNGNPGWPPLCKVSERRALLMFKQDLKDPVNRLASWVAEEDS 68

Query: 61  DCCTWAGVACGNVTGHILELNLRNPSTSNPR--SMLVGKVNPALLDLKHLSYLDLSSNDF 118
           DCC+W GV C +VTGHI EL+L N S S+    S   GK+NP+LL LKHL+YLDLS+NDF
Sbjct: 69  DCCSWTGVVCDHVTGHIHELHL-NSSYSDWEFNSFFGGKINPSLLSLKHLNYLDLSNNDF 127

Query: 119 QGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY---LYVDNVWWL 175
            G QIP F GSM +L +LNL+ ++  G+IP +LGNLS L++L+LSS Y   L V+N+ W+
Sbjct: 128 NGTQIPSFFGSMTSLTHLNLAYSELYGIIPHKLGNLSSLRYLNLSSFYGSNLKVENLQWI 187

Query: 176 SGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLT 235
           SGLS L+HLDL SVNLSKASDWL  TN LPSL+EL +S+C L   P L +P      N T
Sbjct: 188 SGLSLLKHLDLSSVNLSKASDWLQVTNMLPSLVELDMSDCELDQIPPLPTP------NFT 241

Query: 236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN-I 294
           SL  LDL  N FN  +P W++    L  L+L     Q  I     N+TS+  +DLS N I
Sbjct: 242 SLVVLDLSRNSFNCLMPRWVFSLKNLVSLHLSFCGFQSPIPSISQNITSLREIDLSFNSI 301

Query: 295 GLQ----------------------GRIPRSMANFCNLKSVNLRGVHLSQEISEIL---- 328
           GL                       G++PRS+ N   L ++NL G   +  I E L    
Sbjct: 302 GLDPIPKLLFTQKILELSLESNQLTGQLPRSIQNMTGLTTLNLGGNEFNSTIPEWLYSLN 361

Query: 329 ---------DIFSGCVSNGLESL------DMRSSSIYGHLTDQLGQFRNLVTLNLANNSI 373
                    +   G +S+ + +L      D+ S+SI G +   LG   +L  L ++ N  
Sbjct: 362 NLESLLLFGNALRGEISSSIGNLKSLRHFDLSSNSISGPIPMSLGNLSSLEKLYISENHF 421

Query: 374 VGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPP 433
            G   E+ GQL  L +L I  N L G +SE  F+NL KL  F   GN  T +   DW+PP
Sbjct: 422 NGTFTEAIGQLKMLTDLDISYNSLEGVVSEISFSNLIKLKHFVAKGNSFTLKTSRDWVPP 481

Query: 434 FQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLN 493
           FQL  L L + ++G  +P WL +Q  L+ L+L  + IS   P  F      +++L++  N
Sbjct: 482 FQLEILKLDSWHLGPEWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLTFHVQYLNLSHN 541

Query: 494 QFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNE 553
           Q +G+I N+        + ++SN  +G LP+V ++L++LD SN+SFSGS+ HF C R +E
Sbjct: 542 QLYGQIQNIVAGPSSA-VDLSSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFCDRPDE 600

Query: 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKN 613
            K L  L+L +N+L G++PDCWMS+ +L  L L NN  +GN+P S+G +  L  L+LR N
Sbjct: 601 PKQLGILRLGNNFLTGKVPDCWMSWPSLAFLNLENNNLTGNVPMSMGYLDWLESLHLRNN 660

Query: 614 RLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC 673
            L G++P SL+NCT+L+ +D+ EN F G+IP W G+  S + VL LRSN+F G +P  +C
Sbjct: 661 HLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVC 720

Query: 674 DLAFLQILDLADNNLSGAIPKCISNLTGMV------TVKSFTGSVV-------------- 713
            L  LQILDLA N LSG IP+C  NL+ M       +  SF G V               
Sbjct: 721 YLKSLQILDLAHNKLSGMIPRCFHNLSAMANFSQSFSPTSFWGMVASGLTENAILVTKGM 780

Query: 714 ---YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALE 770
              Y +IL  V  +D+S N   GEI  E+T L ALQ +N S N FTGRIP  IG+M  LE
Sbjct: 781 EMEYTKILGFVKGMDLSCNFMYGEIPEELTGLLALQYLNLSNNRFTGRIPSKIGSMAQLE 840

Query: 771 SVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDLCGAP 830
           S+DFS+NQL GEIP SM+ LTFL+HLNLS NNLTG+IP STQLQS + SSF GN+LCGAP
Sbjct: 841 SLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVGNELCGAP 900

Query: 831 LPKNCT 836
           L KNC+
Sbjct: 901 LNKNCS 906

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284751|gb|AEQ27747.1| receptor-like protein [Malus baccata]

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/878 (45%), Positives = 527/878 (60%), Gaps = 80/878 (9%)

Query: 31  CLETERRALLRFKQDLQDPSNRLASWTG--DGDCCTWAGVACGNVTGHILELNLRNPSTS 88
           C  +ERRALL FKQDL+DP NRLASW    D DCC+W GV C +VTGHI EL+L N S S
Sbjct: 37  CKVSERRALLMFKQDLKDPVNRLASWVAEEDSDCCSWTGVVCDHVTGHIHELHL-NSSYS 95

Query: 89  NPR--SMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGM 146
           +    S   GK+NP+LL LKHL+YLDLS+NDF G QIP F GSM +L +LNL+ ++  G+
Sbjct: 96  DWEFNSFFGGKINPSLLSLKHLNYLDLSNNDFNGTQIPSFFGSMTSLTHLNLAYSELYGI 155

Query: 147 IPPQLGNLSDLQFLDLSSNY---LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNT 203
           IP +LGNLS L++L+LSS Y   L V+N+ W+SGLS L+HLDL SVNLSKASDWL  TN 
Sbjct: 156 IPHKLGNLSSLRYLNLSSFYGSNLKVENLQWISGLSLLKHLDLSSVNLSKASDWLQVTNM 215

Query: 204 LPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLEC 263
           LPSL+EL +S+C L   P L +P      N TSL  LDL  N FN  +P W++    L  
Sbjct: 216 LPSLVELDMSDCELDQIPPLPTP------NFTSLVVLDLSRNSFNCLMPRWVFSLKNLVS 269

Query: 264 LNLRNNSLQGTISDAIGNLTSVSWLDLSINI-----------------------GLQGRI 300
           L+L     Q  I     N+TS+  +DLS N                         L G++
Sbjct: 270 LHLSFCGFQSPIPSISQNITSLREIDLSFNSISLDPIPKLLFTQKILELSLESNQLTGQL 329

Query: 301 PRSMANFCNLKSVNLRGVHLSQEISEIL-------------DIFSGCVSNGLESL----- 342
           PRS+ N   L ++NL G   +  I E L             +   G +S+ + +L     
Sbjct: 330 PRSIQNMTGLTTLNLGGNEFNSTIPEWLYSLNNLESLLLFGNALRGEISSSIGNLKSLRH 389

Query: 343 -DMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
            D+ S+SI G +   LG   +L  L ++ N   G   E  GQL  L +L I  N L G +
Sbjct: 390 FDLSSNSISGPIPMSLGNLSSLEKLYISENHFNGTFTEVIGQLKMLTDLDISYNSLEGVV 449

Query: 402 SEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQ 461
           SE  F+NL KL  F   GN  T +   DW+PPFQL  L L + ++G  +P WL +Q  L+
Sbjct: 450 SEISFSNLIKLKHFVAKGNSFTLKTSRDWVPPFQLEILKLDSWHLGPEWPMWLRTQTQLK 509

Query: 462 YLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGP 521
            L+L  + IS   P  F      +++L++  NQ +G+I N+        + ++SN  +G 
Sbjct: 510 ELSLSGTGISSTIPTWFWNLTFHVQYLNLSHNQLYGQIQNIVAGPSSA-VDLSSNQFTGA 568

Query: 522 LPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNL 581
           LP+V ++L++LD SN+SFSGS+ HF C R +E K L  L+L +N+L G++PDCWMS+ +L
Sbjct: 569 LPIVPTSLMWLDLSNSSFSGSVFHFFCDRPDEPKQLGILRLGNNFLTGKVPDCWMSWPSL 628

Query: 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG 641
             L L NN  +GN+P S+G +  L  L+LR N L G++P SL+NCT+L+ +D+ EN F G
Sbjct: 629 AFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSG 688

Query: 642 NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG 701
           +IP W G+  S + VL LRSN+F G +P  +C L  LQILDLA N LSG IP+C  NL+ 
Sbjct: 689 SIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSLQILDLAHNELSGMIPRCFHNLSA 748

Query: 702 MV------TVKSFTGSVV-----------------YREILPLVSLLDISRNNFSGEILSE 738
           M       +  SF G V                  Y +IL  V  +D+S N   GEI  E
Sbjct: 749 MANFSQSFSPTSFWGMVASGLTENAILVTKGMEMEYTKILGFVKGMDLSCNFMYGEIPEE 808

Query: 739 VTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNL 798
           +T L ALQ +N S N FTGRIP  IG+M  LES+DFS+NQL GEIP SM+ LTFL+HLNL
Sbjct: 809 LTGLLALQYLNLSNNRFTGRIPSKIGSMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNL 868

Query: 799 SNNNLTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNCT 836
           S NNLTG+IP STQLQS + SSF GN+LCGAPL KNC+
Sbjct: 869 SYNNLTGRIPESTQLQSLDQSSFVGNELCGAPLNKNCS 906

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14330716|emb|CAC40826.1| HcrVf2 protein [Malus floribunda] gi|350284757|gb|AEQ27750.1| receptor-like protein [Malus micromalus]

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/878 (45%), Positives = 527/878 (60%), Gaps = 80/878 (9%)

Query: 31  CLETERRALLRFKQDLQDPSNRLASWTG--DGDCCTWAGVACGNVTGHILELNLRNPSTS 88
           C  +ERRALL FKQDL+DP NRLASW    D DCC+W GV C +VTGHI EL+L N S S
Sbjct: 37  CKVSERRALLMFKQDLKDPVNRLASWVAEEDSDCCSWTGVVCDHVTGHIHELHL-NSSYS 95

Query: 89  NPR--SMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGM 146
           +    S   GK+NP+LL LKHL+YLDLS+NDF G QIP F GSM +L +LNL+ ++  G+
Sbjct: 96  DWEFNSFFGGKINPSLLSLKHLNYLDLSNNDFNGTQIPSFFGSMTSLTHLNLAYSELYGI 155

Query: 147 IPPQLGNLSDLQFLDLSSNY---LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNT 203
           IP +LGNLS L++L+LSS Y   L V+N+ W+SGLS L+HLDL SVNLSKASDWL  TN 
Sbjct: 156 IPHKLGNLSSLRYLNLSSFYGSNLKVENLQWISGLSLLKHLDLSSVNLSKASDWLQVTNM 215

Query: 204 LPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLEC 263
           LPSL+EL +S+C L   P L +P      N TSL  LDL  N FN  +P W++    L  
Sbjct: 216 LPSLVELDMSDCELDQIPPLPTP------NFTSLVVLDLSRNSFNCLMPRWVFSLKNLVS 269

Query: 264 LNLRNNSLQGTISDAIGNLTSVSWLDLSINI-----------------------GLQGRI 300
           L+L     Q  I     N+TS+  +DLS N                         L G++
Sbjct: 270 LHLSFCGFQSPIPSISQNITSLREIDLSFNSISLDPIPKLLFTQKILELSLESNQLTGQL 329

Query: 301 PRSMANFCNLKSVNLRGVHLSQEISEIL-------------DIFSGCVSNGLESL----- 342
           PRS+ N   L ++NL G   +  I E L             +   G +S+ + +L     
Sbjct: 330 PRSIQNMTGLTTLNLGGNEFNSTIPEWLYSLNNLESLLLFGNALRGEISSSIGNLKSLRH 389

Query: 343 -DMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
            D+ S+SI G +   LG   +L  L ++ N   G   E  GQL  L +L I  N L G +
Sbjct: 390 FDLSSNSISGPIPMSLGNLSSLEKLYISENHFNGTFTEVIGQLKMLTDLDISYNSLEGVV 449

Query: 402 SEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQ 461
           SE  F+NL KL  F   GN  T +   DW+PPFQL  L L + ++G  +P WL +Q  L+
Sbjct: 450 SEISFSNLIKLKHFVAKGNSFTLKTSRDWVPPFQLEILKLDSWHLGPEWPMWLRTQTQLK 509

Query: 462 YLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGP 521
            L+L  + IS   P  F      +++L++  NQ +G+I N+        + ++SN  +G 
Sbjct: 510 ELSLSGTGISSTIPTWFWNLTFHVQYLNLSHNQLYGQIQNIVAGPSSA-VDLSSNQFTGA 568

Query: 522 LPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNL 581
           LP+V ++L++LD SN+SFSGS+ HF C R +E K L  L+L +N+L G++PDCWMS+ +L
Sbjct: 569 LPIVPTSLMWLDLSNSSFSGSVFHFFCDRPDEPKQLGILRLGNNFLTGKVPDCWMSWPSL 628

Query: 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG 641
             L L NN  +GN+P S+G +  L  L+LR N L G++P SL+NCT+L+ +D+ EN F G
Sbjct: 629 AFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSG 688

Query: 642 NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG 701
           +IP W G+  S + VL LRSN+F G +P  +C L  LQILDLA N LSG IP+C  NL+ 
Sbjct: 689 SIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSA 748

Query: 702 MV------TVKSFTGSVV-----------------YREILPLVSLLDISRNNFSGEILSE 738
           M       +  SF G V                  Y +IL  V  +D+S N   GEI  E
Sbjct: 749 MANFSQSFSPTSFWGMVASGLTENAILVTKGMEMEYTKILGFVKGMDLSCNFMYGEIPEE 808

Query: 739 VTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNL 798
           +T L ALQ +N S N FTGRIP  IG+M  LES+DFS+NQL GEIP SM+ LTFL+HLNL
Sbjct: 809 LTGLLALQYLNLSNNRFTGRIPSKIGSMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNL 868

Query: 799 SNNNLTGKIPLSTQLQSFNASSFAGNDLCGAPLPKNCT 836
           S NNLTG+IP STQLQS + SSF GN+LCGAPL KNC+
Sbjct: 869 SYNNLTGRIPESTQLQSLDQSSFVGNELCGAPLNKNCS 906

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284753|gb|AEQ27748.1| receptor-like protein [Malus micromalus]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/867 (45%), Positives = 536/867 (61%), Gaps = 68/867 (7%)

Query: 4   ILVFACLLLELLVISISFFRGS-SYHVGCLETERRALLRFKQDLQDPSNRLASWTG---- 58
           IL+   L +  +  SI    G+  +   C E+ER+ALL FKQDL+DP+NRLASW      
Sbjct: 9   ILLTRFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLASWVAEEDS 68

Query: 59  DGDCCTWAGVACGNVTGHILELNLRNPSTSNP----RSMLVGKVNPALLDLKHLSYLDLS 114
           D DCC+W GV C + TGHI EL+L N   ++P    +S   GK+NP+LL LKHL++LDLS
Sbjct: 69  DSDCCSWTGVVCDHTTGHIHELHLNN---TDPFLDLKSSFGGKINPSLLSLKHLNFLDLS 125

Query: 115 SNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSN--YLYVDNV 172
           +N F   QIP F GSM +L +LNL+ ++F G+IP +LGNLS L++L+LSSN  YL V+N+
Sbjct: 126 NNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLNLSSNSIYLKVENL 185

Query: 173 WWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQ 232
            W+SGLS L+HLDL  VNLSKASDWL  TN LPSL++L +S+C L+  P    P+P    
Sbjct: 186 QWISGLSLLKHLDLSGVNLSKASDWLQVTNMLPSLVKLIMSDCQLYQIP----PLPT--T 239

Query: 233 NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSI 292
           N TSL  LDL  N+FNS +P W++    L  ++L +   QG I     N+T +  +DLS 
Sbjct: 240 NFTSLVVLDLSFNNFNSLMPRWVFSLKNLVSIHLSDCGFQGPIPSISQNITYLREIDLSD 299

Query: 293 NIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGH 352
           N            NF              Q  SEI +  S C  +G++SL +R++++ G 
Sbjct: 300 N------------NFT------------VQRPSEIFESLSRCGPDGIKSLSLRNTNVSGP 335

Query: 353 LTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
           +   LG   +L  L+++ N   G   E  GQL  L +L I  N L G +SE  F+NLTKL
Sbjct: 336 IPMSLGNMSSLEKLDISVNQFNGTFTEVIGQLKMLTDLDISYNSLEGAVSEVSFSNLTKL 395

Query: 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472
             F   GN LT +   DW+PPFQL  L L + ++G ++P WL +Q  L+ L+L  + IS 
Sbjct: 396 KHFIANGNSLTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISS 455

Query: 473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYL 532
             P  F    SQ+++L++  NQ +G+I N+      + + ++SN  +G LP+V ++L +L
Sbjct: 456 TIPTWFWNLTSQVEYLNLSRNQLYGQIQNIVAGPSSV-VDLSSNQFTGALPIVPTSLFFL 514

Query: 533 DFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFS 592
           D S +SFS S+ HF C R +E K L  L L +N L G++PDCWMS+Q+L+ L L NN  +
Sbjct: 515 DLSRSSFSESVFHFFCDRPDEPKQLSVLNLGNNLLTGKVPDCWMSWQHLRFLNLENNNLT 574

Query: 593 GNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFS 652
           GN+P S+G +  L  L+LR N L G++P SL+NCT L+ +D+ EN F G+IP W G+  S
Sbjct: 575 GNVPMSMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSENGFSGSIPIWIGKSLS 634

Query: 653 RMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK------ 706
            + VL LRSN+F G +P  +C L  LQILDLA N LSG IP+C  NL+ +          
Sbjct: 635 GLNVLNLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSALADFSESFYPT 694

Query: 707 SFTGS-----------------VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSIN 749
           S+ G+                 + Y +IL  V ++D+S N   GEI  E+T L ALQS+N
Sbjct: 695 SYWGTNWSELSENAILVTKGIEMEYSKILGFVKVMDLSCNFMYGEIPEELTGLLALQSLN 754

Query: 750 FSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPL 809
            S N FTGRIP +IG M  LES+DFS+NQL GEIP SM++LTFL+HLNLS NNLTG+IP 
Sbjct: 755 LSNNRFTGRIPSNIGNMAWLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPE 814

Query: 810 STQLQSFNASSFAGNDLCGAPLPKNCT 836
           STQLQS + SSF GN LCGAPL KNC+
Sbjct: 815 STQLQSLDQSSFVGNKLCGAPLNKNCS 841

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970631|gb|ACJ03074.1| HcrVf4 [Malus floribunda]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/867 (45%), Positives = 536/867 (61%), Gaps = 68/867 (7%)

Query: 4   ILVFACLLLELLVISISFFRGS-SYHVGCLETERRALLRFKQDLQDPSNRLASWTG---- 58
           IL+   L +  +  SI    G+  +   C E+ER+ALL FKQDL+DP+NRLASW      
Sbjct: 56  ILLTRFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLASWVAEEDS 115

Query: 59  DGDCCTWAGVACGNVTGHILELNLRNPSTSNP----RSMLVGKVNPALLDLKHLSYLDLS 114
           D DCC+W GV C + TGHI EL+L N   ++P    +S   GK+NP+LL LKHL++LDLS
Sbjct: 116 DSDCCSWTGVVCDHTTGHIHELHLNN---TDPFLDLKSSFGGKINPSLLSLKHLNFLDLS 172

Query: 115 SNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSN--YLYVDNV 172
           +N F   QIP F GSM +L +LNL+ ++F G+IP +LGNLS L++L+LSSN  YL V+N+
Sbjct: 173 NNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLNLSSNSIYLKVENL 232

Query: 173 WWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQ 232
            W+SGLS L+HLDL  VNLSKASDWL  TN LPSL++L +S+C L+  P    P+P    
Sbjct: 233 QWISGLSLLKHLDLSGVNLSKASDWLQVTNMLPSLVKLIMSDCQLYQIP----PLPT--T 286

Query: 233 NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSI 292
           N TSL  LDL  N+FNS +P W++    L  ++L +   QG I     N+T +  +DLS 
Sbjct: 287 NFTSLVVLDLSFNNFNSLMPRWVFSLKNLVSIHLSDCGFQGPIPSISQNITYLREIDLSD 346

Query: 293 NIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGH 352
           N            NF              Q  SEI +  S C  +G++SL +R++++ G 
Sbjct: 347 N------------NFT------------VQRPSEIFESLSRCGPDGIKSLSLRNTNVSGP 382

Query: 353 LTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
           +   LG   +L  L+++ N   G   E  GQL  L +L I  N L G +SE  F+NLTKL
Sbjct: 383 IPMSLGNMSSLEKLDISVNQFNGTFTEVIGQLKMLTDLDISYNSLEGAVSEVSFSNLTKL 442

Query: 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472
             F   GN LT +   DW+PPFQL  L L + ++G ++P WL +Q  L+ L+L  + IS 
Sbjct: 443 KHFIANGNSLTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISS 502

Query: 473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYL 532
             P  F    SQ+++L++  NQ +G+I N+      + + ++SN  +G LP+V ++L +L
Sbjct: 503 TIPTWFWNLTSQVEYLNLSRNQLYGQIQNIVAGPSSV-VDLSSNQFTGALPIVPTSLFFL 561

Query: 533 DFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFS 592
           D S +SFS S+ HF C R +E K L  L L +N L G++PDCWMS+Q+L+ L L NN  +
Sbjct: 562 DLSRSSFSESVFHFFCDRPDEPKQLSVLNLGNNLLTGKVPDCWMSWQHLRFLNLENNNLT 621

Query: 593 GNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFS 652
           GN+P S+G +  L  L+LR N L G++P SL+NCT L+ +D+ EN F G+IP W G+  S
Sbjct: 622 GNVPMSMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSENGFSGSIPIWIGKSLS 681

Query: 653 RMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK------ 706
            + VL LRSN+F G +P  +C L  LQILDLA N LSG IP+C  NL+ +          
Sbjct: 682 GLNVLNLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSALADFSESFYPT 741

Query: 707 SFTGS-----------------VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSIN 749
           S+ G+                 + Y +IL  V ++D+S N   GEI  E+T L ALQS+N
Sbjct: 742 SYWGTNWSELSENAILVTKGIEMEYSKILGFVKVMDLSCNFMYGEIPEELTGLLALQSLN 801

Query: 750 FSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPL 809
            S N FTGRIP +IG M  LES+DFS+NQL GEIP SM++LTFL+HLNLS NNLTG+IP 
Sbjct: 802 LSNNRFTGRIPSNIGNMAWLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPE 861

Query: 810 STQLQSFNASSFAGNDLCGAPLPKNCT 836
           STQLQS + SSF GN LCGAPL KNC+
Sbjct: 862 STQLQSLDQSSFVGNKLCGAPLNKNCS 888

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284761|gb|AEQ27752.1| receptor-like protein [Malus micromalus]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/867 (45%), Positives = 535/867 (61%), Gaps = 68/867 (7%)

Query: 4   ILVFACLLLELLVISISFFRGS-SYHVGCLETERRALLRFKQDLQDPSNRLASWTG---- 58
           IL+   L +  +  SI    G+  +   C E+ER+ALL FKQDL+DP+NRLASW      
Sbjct: 9   ILLTRFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLASWVAEEDS 68

Query: 59  DGDCCTWAGVACGNVTGHILELNLRNPSTSNP----RSMLVGKVNPALLDLKHLSYLDLS 114
           D DCC+W GV C + TGHI EL+L N   ++P    +S   GK+NP+LL LKHL++LDLS
Sbjct: 69  DSDCCSWTGVVCDHTTGHIHELHLNN---TDPFLDLKSSFGGKINPSLLSLKHLNFLDLS 125

Query: 115 SNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSN--YLYVDNV 172
           +N F   QIP F GSM +L +LNL+ ++F G+IP +LGNLS L++L+LSSN  YL V+N+
Sbjct: 126 NNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLNLSSNSIYLKVENL 185

Query: 173 WWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQ 232
            W+SGLS L+HLDL  VNLSKASDWL  TN LPSL++L +S+C L+  P    P+P    
Sbjct: 186 QWISGLSLLKHLDLSGVNLSKASDWLQVTNMLPSLVKLIMSDCQLYQIP----PLPT--T 239

Query: 233 NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSI 292
           N TSL  LDL  N+FNS +P W++    L  ++L +   QG I     N+T +  +DLS 
Sbjct: 240 NFTSLVVLDLSFNNFNSLMPRWVFSLKNLVSIHLSDCGFQGPIPSISQNITYLREIDLSD 299

Query: 293 NIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGH 352
           N            NF              Q  SEI +  S C  +G++SL +R++++ G 
Sbjct: 300 N------------NFT------------VQRPSEIFESLSRCGPDGIKSLSLRNTNVSGP 335

Query: 353 LTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
           +   LG   +L  L+++ N   G   E  GQL  L +L I  N L G +SE  F+NLTKL
Sbjct: 336 IPMSLGNMSSLEKLDISVNQFNGTFTEVIGQLKMLTDLDISYNSLEGAVSEVSFSNLTKL 395

Query: 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472
             F   GN LT +   DW+PPFQL  L L + ++G ++P WL +Q  L+ L+L  + IS 
Sbjct: 396 KHFIANGNSLTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISS 455

Query: 473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYL 532
             P  F    SQ+++L++  NQ +G+I N+      + + ++SN  +G LP+V ++L +L
Sbjct: 456 TIPTWFWNLTSQVEYLNLSRNQLYGQIQNIVAGPSSV-VDLSSNQFTGALPIVPTSLFFL 514

Query: 533 DFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFS 592
           D S +SFS S+ HF C R +E K L  L L +N L G++PDCWMS+Q+L+ L L NN  +
Sbjct: 515 DLSRSSFSESVFHFFCDRPDEPKQLSVLNLGNNLLTGKVPDCWMSWQHLRFLNLENNNLT 574

Query: 593 GNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFS 652
           GN+P S+G +  L  L+LR N L G++P SL+NCT L+ +D+ EN F G+IP W G+  S
Sbjct: 575 GNVPMSMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSENGFSGSIPIWIGKSLS 634

Query: 653 RMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK------ 706
            + VL LRSN+F G +P  +C L   QILDLA N LSG IP+C  NL+ +          
Sbjct: 635 GLNVLNLRSNKFEGDIPNEVCYLKSPQILDLAHNKLSGMIPRCFHNLSALADFSESFYPT 694

Query: 707 SFTGS-----------------VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSIN 749
           S+ G+                 + Y +IL  V ++D+S N   GEI  E+T L ALQS+N
Sbjct: 695 SYWGTNWSELSENAILVTKGIEMEYSKILGFVKVMDLSCNFMYGEIPEELTGLLALQSLN 754

Query: 750 FSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPL 809
            S N FTGRIP +IG M  LES+DFS+NQL GEIP SM++LTFL+HLNLS NNLTG+IP 
Sbjct: 755 LSNNRFTGRIPSNIGNMAWLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPE 814

Query: 810 STQLQSFNASSFAGNDLCGAPLPKNCT 836
           STQLQS + SSF GN LCGAPL KNC+
Sbjct: 815 STQLQSLDQSSFVGNKLCGAPLNKNCS 841

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	840
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.940	0.872	0.323	5.3e-95
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.854	0.574	0.324	7.7e-73
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.909	0.610	0.307	5.7e-72
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.922	0.869	0.287	3.1e-67
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.827	0.777	0.307	2.2e-66
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.644	0.607	0.288	2.6e-64
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.928	0.654	0.282	5.2e-62
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.930	0.817	0.278	4e-61
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.827	0.592	0.295	1.2e-60
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.921	0.827	0.272	3.3e-59

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 274/848 (32%), Positives = 428/848 (50%)

Query:    24 GSSYHVGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLR 83
             GS+    C+ TER+ALL F+  L D S+RL SW+G  DCC W GV C   T H+++++LR
Sbjct:    26 GSAASPKCISTERQALLTFRAALTDLSSRLFSWSGP-DCCNWPGVLCDARTSHVVKIDLR 84

Query:    84 NPSTS-----NPRSMLVGKVNPAXXXXXXXXXXXXXXNDFQGVQIPRFIGSMRNLRYLNL 138
             NPS         R  L GK++P+              NDF  ++IP FIG + +LRYLNL
Sbjct:    85 NPSQDVRSDEYKRGSLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNL 144

Query:   139 SDTQFVGMIPPQLGNLSDLQFLDL-SSNY-------LYVDNVWWLSGLSF-LEHLDLRSV 189
             S + F G IP  LGNLS L+ LDL + ++       L   N+ WLS LS  L++L++  V
Sbjct:   145 SSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYV 204

Query:   190 NLSKASD-WLMATNTLPSLLELRLSNCSLHHFP-TLASPIPRGLQNLTSLKHLDLDSNHF 247
             NLS A + WL   + + +L EL L N  L + P TL+S       +L  L+ LDL  N  
Sbjct:   205 NLSGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSA-----DLKLLEVLDLSENSL 259

Query:   248 NSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF 307
             NS IP+WL+  + L  L LR + LQG+I     NL  +  LDLS N+ LQG IP  + + 
Sbjct:   260 NSPIPNWLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDL 319

Query:   308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
               LK ++L    L+ +I   LD FS    N L  LD+ S+ + G L + LG  RNL TL+
Sbjct:   320 PQLKFLDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPESLGSLRNLQTLD 379

Query:   368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEF--HFANLTKLSWF-RVGGNQLTF 424
             L++NS  G +P S G +++L++L + +N +NGT++E     A L  L+      G  L  
Sbjct:   380 LSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLMANTWGGVLQ- 438

Query:   425 EVKHDWIPPFQLVALGLHNCYVGS---RFPQ-WLHSQKHLQYLNLLNSRISDIFPIRFLK 480
               K  ++    L ++ L      S   + P  W+   + L+ + + N RI  +FP+ +L+
Sbjct:   439 --KSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFR-LELIQIENCRIG-LFPM-WLQ 493

Query:   481 SASQLKFLDVGLNQFHGKISNLTKN---TQLLFLSVNSNNMSGPLP--LVSSNLVYLDFS 535
               ++L F+ +        I +   +   +++ +L + +N + G LP  L    L  +D S
Sbjct:   494 VQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKLNTIDLS 553

Query:   536 NNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGN 594
             +N+F G+   F  +  N T+    L+L +N   G +P +  +    ++ + L +N F+GN
Sbjct:   554 SNNFEGT---FPLWSTNATE----LRLYENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGN 606

Query:   595 LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRM 654
             +P+SL  ++ L  L LRKN  SG  P        L  +DV EN   G IP   G     +
Sbjct:   607 IPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEIPESLG-MLPSL 665

Query:   655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK----SFTG 710
              VL+L  N   G +P+++ + + L  +DL  N L+G +P  +  L+ +  ++    SFTG
Sbjct:   666 SVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFMLRLQSNSFTG 725

Query:   711 SVVYREI-LPLVSLLDISRNNFSGEILSEVTNLKALQ--SINFSFNTFTGRIPESIGTMR 767
              +      +P + +LD+S N  SG I   ++NL A+   + N  F      +  +     
Sbjct:   726 QIPDDLCNVPNLRILDLSGNKISGPIPKCISNLTAIARGTNNEVFQNLVFIVTRAREYEA 785

Query:   768 ALESVDFSVNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPLS-TQLQSFNASSFAGNDL 826
                S++ S N +SGEIP+ +                 G IP   ++L        + N  
Sbjct:   786 IANSINLSGNNISGEIPREILGLLYLRILNLSRNSMAGSIPEKISELSRLETLDLSKNKF 845

Query:   827 CGAPLPKN 834
              GA +P++
Sbjct:   846 SGA-IPQS 852

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 7.7e-73, P = 7.7e-73
 Identities = 251/773 (32%), Positives = 377/773 (48%)

Query:    94 LVGKVNPAXXXXXXXXXXXXXXNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGN 153
             LVG +  A              N   G +IP  +GS+ N+R L + D + VG IP  LGN
Sbjct:   107 LVGPIPTALSNLTSLESLFLFSNQLTG-EIPSQLGSLVNIRSLRIGDNELVGDIPETLGN 165

Query:   154 LSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS--------VNLSKASD---WLMATN 202
             L +LQ L L+S  L       L  L  ++ L L+           L   SD   +  A N
Sbjct:   166 LVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAEN 225

Query:   203 TLPSLL--EL-RLSNCSLHHFP--TLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYK 257
              L   +  EL RL N  + +    +L   IP  L  ++ L++L L +N     IP  L  
Sbjct:   226 MLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLAD 285

Query:   258 FSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSI-NIGLQGRIPRSM-ANFCNLKSVNL 315
                L+ L+L  N+L G I +   N++ +  LDL + N  L G +P+S+ +N  NL+ + L
Sbjct:   286 LGNLQTLDLSANNLTGEIPEEFWNMSQL--LDLVLANNHLSGSLPKSICSNNTNLEQLVL 343

Query:   316 RGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVG 375
              G  LS EI   L   S C S  L+ LD+ ++S+ G + + L +   L  L L NN++ G
Sbjct:   344 SGTQLSGEIPVEL---SKCQS--LKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEG 398

Query:   376 LIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQ 435
              +  S   L+ L+ L +Y N L G L +   + L KL    +  N+ + E+  +      
Sbjct:   399 TLSPSISNLTNLQWLVLYHNNLEGKLPK-EISALRKLEVLFLYENRFSGEIPQEIGNCTS 457

Query:   436 LVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQF 495
             L  + +   +     P  +   K L  L+L  + +    P   L +  QL  LD+  NQ 
Sbjct:   458 LKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPAS-LGNCHQLNILDLADNQL 516

Query:   496 HGKISN---LTKNTQLLFLSVNSNNMSGPLP--LVS-SNLVYLDFSNNSFSGSISHFLCY 549
              G I +     K  + L L   +N++ G LP  L+S  NL  ++ S+N  +G+I H LC 
Sbjct:   517 SGSIPSSFGFLKGLEQLMLY--NNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLC- 572

Query:   550 RVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLY 609
                 + S     +T+N  + EIP    + QNL  L+L  N+ +G +P +LG I  L  L 
Sbjct:   573 ---GSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLD 629

Query:   610 LRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP 669
             +  N L+G IP+ L  C  L  +D++ N   G IP W G + S++  L L SNQF   LP
Sbjct:   630 MSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLP 688

Query:   670 KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV-----KSFTGSVVYREILPLVSL- 723
               + +   L +L L  N+L+G+IP+ I NL G + V       F+GS+  + +  L  L 
Sbjct:   689 TELFNCTKLLVLSLDGNSLNGSIPQEIGNL-GALNVLNLDKNQFSGSLP-QAMGKLSKLY 746

Query:   724 -LDISRNNFSGEILSEVTNLKALQS-INFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781
              L +SRN+ +GEI  E+  L+ LQS ++ S+N FTG IP +IGT+  LE++D S NQL+G
Sbjct:   747 ELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTG 806

Query:   782 EIPQSMXXXXXXXXXXXXXXXXTGKIPLSTQLQSFNASSFAGND-LCGAPLPK 833
             E+P S+                 GK  L  Q   + A SF GN  LCG+PL +
Sbjct:   807 EVPGSVGDMKSLGYLNVSFNNLGGK--LKKQFSRWPADSFLGNTGLCGSPLSR 857

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 5.7e-72, P = 5.7e-72
 Identities = 255/829 (30%), Positives = 390/829 (47%)

Query:    53 LASW-TGDGDCCTWAGVACGN--VTG-HILELNLR---NPSTSNPRSM---------LVG 96
             L  W +G    C W GV CG   + G ++  L L    +PS     ++         LVG
Sbjct:    50 LRDWNSGSPSYCNWTGVTCGGREIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVG 109

Query:    97 KVNPAXXXXXXXXXXXXXXNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSD 156
              +                 ++     IP  +GS+ NL+ L L D +  G IP   GNL +
Sbjct:   110 PIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVN 169

Query:   157 LQFLDLSS---NYLYVDNVWWLSGLS--FLEHLDLRSV------NLSKASDWLMATNTLP 205
             LQ L L+S     L       L  L    L+  +L         N +  + +  A N L 
Sbjct:   170 LQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLN 229

Query:   206 SLL--EL-RLSNCSLHHFP--TLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSP 260
               L  EL RL N    +    + +  IP  L +L S+++L+L  N     IP  L + + 
Sbjct:   230 GSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELAN 289

Query:   261 LECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSM-ANFCNLKSVNLRGVH 319
             L+ L+L +N+L G I +    +  + +L L+ N  L G +P+++ +N  +LK + L    
Sbjct:   290 LQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKN-RLSGSLPKTICSNNTSLKQLFLSETQ 348

Query:   320 LSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPE 379
             LS EI   +   S C S  L+ LD+ ++++ G + D L Q   L  L L NNS+ G +  
Sbjct:   349 LSGEIPAEI---SNCQS--LKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSS 403

Query:   380 SFGQLSTLRELQIYDNKLNGTL-SEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVA 438
             S   L+ L+E  +Y N L G +  E  F  L KL    +  N+ + E+  +     +L  
Sbjct:   404 SISNLTNLQEFTLYHNNLEGKVPKEIGF--LGKLEIMYLYENRFSGEMPVEIGNCTRLQE 461

Query:   439 LGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGK 498
             +  +   +    P  +   K L  L+L  + +    P   L +  Q+  +D+  NQ  G 
Sbjct:   462 IDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPAS-LGNCHQMTVIDLADNQLSGS 520

Query:   499 I-SNLTKNTQLLFLSVNSNNMSGPLP--LVS-SNLVYLDFSNNSFSGSISHFLCYRVNET 554
             I S+    T L    + +N++ G LP  L++  NL  ++FS+N F+GSIS  LC     +
Sbjct:   521 IPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISP-LC----GS 575

Query:   555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR 614
              S     +T+N  +G+IP       NL  L+L  N+F+G +P + G I+ L  L + +N 
Sbjct:   576 SSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNS 635

Query:   615 LSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICD 674
             LSG IP+ L  C  L  +D++ N   G IPTW G +   +  L L SN+F G LP  I  
Sbjct:   636 LSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFS 694

Query:   675 LAFLQILDLADNNLSGAIPKCISNLTGMVTVK----SFTGSVVYREILPLVSLLDI--SR 728
             L  +  L L  N+L+G+IP+ I NL  +  +       +G +    I  L  L ++  SR
Sbjct:   695 LTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLP-STIGKLSKLFELRLSR 753

Query:   729 NNFSGEILSEVTNLKALQS-INFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSM 787
             N  +GEI  E+  L+ LQS ++ S+N FTGRIP +I T+  LES+D S NQL GE+P  +
Sbjct:   754 NALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQI 813

Query:   788 XXXXXXXXXXXXXXXXTGKIPLSTQLQSFNASSFAGN-DLCGAPLPKNC 835
                              GK  L  Q   + A +F GN  LCG+PL  +C
Sbjct:   814 GDMKSLGYLNLSYNNLEGK--LKKQFSRWQADAFVGNAGLCGSPL-SHC 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 240/835 (28%), Positives = 382/835 (45%)

Query:    31 CLETERRALLRFKQDLQDPS---------NRLASWTGDGDCCTWAGVACGNVTGHILELN 81
             CL  +R ALL FK +   PS            A W  + DCC+W G++C   TG ++EL+
Sbjct:    26 CLPDQRDALLEFKNEFSIPSPDSDLMLILQTTAKWRNNTDCCSWGGISCDPKTGVVVELD 85

Query:    82 LRNPSTSNPRSMLVGKVNPAXXXXXXXXXXXXXXNDFQGVQIPRFIGSMRNLRYLNLSDT 141
             L N S  N R     + N +              ND     +P   G+ + LR LNL   
Sbjct:    86 LGN-SDLNGRL----RSNSSLFRLQHLQSLDLSYNDLS-CTLPDSSGNFKYLRVLNLLGC 139

Query:   142 QFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMAT 201
                G IP  L +LS L  LDLS N      +  L  +  L+HL + S+   K +  +   
Sbjct:   140 NLFGEIPTSLRSLSYLTDLDLSYNDDLTGEI--LDSMGNLKHLRVLSLTSCKFTGKI--P 195

Query:   202 NTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL 261
             ++L +L  L   + S ++F      +P  + NL SL+ L+L   +F   IP  L   S L
Sbjct:   196 SSLGNLTYLTDLDLSWNYF---TGELPDSMGNLKSLRVLNLHRCNFFGKIPTSLGSLSNL 252

Query:   262 ECLNLRNNSLQGTISDAIG-------------NLTSVSWLDLSINIGLQGRIPRSMANFC 308
               L++  N       D++              NL+S++ +DLS N   +  +P +M++  
Sbjct:   253 TDLDISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSSLTNVDLSSN-QFKAMLPSNMSSLS 311

Query:   309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
              L++ ++ G   S  I   L +    +   L + D       G+++       NL  L +
Sbjct:   312 KLEAFDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSGPLKIGNISSP----SNLQELYI 367

Query:   369 ANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKH 428
               N+I G IP S  +L  L  L +      G +    F  L  L    + G  L     H
Sbjct:   368 GENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSIFLQLKSLRSLDLSGINLNISSSH 427

Query:   429 DWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFL 488
                 P  ++ L L +C + S+FP++L +Q  L +L++  ++I    P  +L     L+++
Sbjct:   428 HL--PSHMMHLILSSCNI-SQFPKFLENQTSLYHLDISANQIEGQVP-EWLWRLPTLRYV 483

Query:   489 DVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLC 548
             ++  N F G+++ L  N    F++ + N  SG +P     +  L  SNN+FSGSI    C
Sbjct:   484 NIAQNAFSGELTMLP-NPIYSFIA-SDNKFSGEIPRAVCEIGTLVLSNNNFSGSIPP--C 539

Query:   549 YRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWL 608
             + ++  K+L  L L +N L G IP+  + +  L+ L + +N+ SG  P SL + + L +L
Sbjct:   540 FEISN-KTLSILHLRNNSLSGVIPEESL-HGYLRSLDVGSNRLSGQFPKSLINCSYLQFL 597

Query:   609 YLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGER--FSRMLVLILRSNQFHG 666
              + +NR++   P  LK+   L  L +  NEF G I +  G+   FS++    +  N+F G
Sbjct:   598 NVEENRINDTFPSWLKSLPNLQLLVLRSNEFHGPIFSP-GDSLSFSKLRFFDISENRFSG 656

Query:   667 PLPKT--ICDLAFLQILDLADNNLSGAI---PKCISNLTGMVTVKSFTGSVVYREILPLV 721
              LP    +        +D+ DN     +    +   + + ++T+K     +V      + 
Sbjct:   657 VLPSDYFVGWSVMSSFVDIIDNTPGFTVVGDDQESFHKSVVLTIKGLNMELVGSGF-EIY 715

Query:   722 SLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781
               +D+S N   G+I   +  LK L  +N S N FTG IP S+  +  L+S+D S N+LSG
Sbjct:   716 KTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSG 775

Query:   782 EIPQSMXXXXXXXXXXXXXXXXTGKIPLSTQLQSFNASSFAGND-LCGAPLPKNC 835
              IP  +                 G IP  TQ+QS N+SSFA N  LCGAPL K C
Sbjct:   776 SIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGAPLQKKC 830

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 232/754 (30%), Positives = 348/754 (46%)

Query:   116 NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWL 175
             N F G QI   IG++  L  L+LS  QF G IP  +GNLS L FL LS N  +      +
Sbjct:    92 NRFSG-QILNSIGNLSRLTSLDLSFNQFSGQIPSSIGNLSHLTFLGLSGNRFFGQIPSSI 150

Query:   176 SGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLT 235
               LS L  L L          +  +   L +L  L LS      +   +  IP  + NL+
Sbjct:   151 GNLSHLTFLGLSGNRFF--GQFPSSIGGLSNLTNLHLS------YNKYSGQIPSSIGNLS 202

Query:   236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIG 295
              L  L L  N+F   IP      + L  L++  N L G   + + NLT +S + LS N  
Sbjct:   203 QLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLLNLTGLSVVSLSNN-K 261

Query:   296 LQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTD 355
               G +P ++ +  NL +        +      L I       GL    ++ +  +G+++ 
Sbjct:   262 FTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFIIPSLTYLGLSGNQLKGTLEFGNISS 321

Query:   356 QLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFH-FANLTKLSW 414
                   NL  LN+ +N+ +G IP S  +L  L+EL I          +F  F++L  L  
Sbjct:   322 P----SNLQYLNIGSNNFIGPIPSSISKLINLQELGISHLNTQCRPVDFSIFSHLKSLDD 377

Query:   415 FRVGGNQLTFEVKHDWIPPFQ-LVALGLHNCYVGSRFPQWLHSQ---KHLQYLNLLNSRI 470
              R+     T    +D +P F+ L +L L    V +     + S    + +Q L L    I
Sbjct:   378 LRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKSSVSSDPPSQSIQSLYLSGCGI 437

Query:   471 SDIFPIRFLKSASQLKFLDVGLNQFHGKISN-LTKNTQLLFLSVNSNNMSG-PLPLVSS- 527
             +D FP   L++  +L FLDV  N+  G++   L     L +L++++N   G   P     
Sbjct:   438 TD-FP-EILRTQHELGFLDVSNNKIKGQVPGWLWTLPNLFYLNLSNNTFIGFQRPTKPEP 495

Query:   528 NLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQ-NLKVLKL 586
             ++ YL  SNN+F+G I  F+C    E +SL  L L+DN   G IP C  + + NL  L L
Sbjct:   496 SMAYLLGSNNNFTGKIPSFIC----ELRSLYTLDLSDNNFSGSIPRCMENLKSNLSELNL 551

Query:   587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTW 646
               N  SG  P  +    SL  L +  N+L GK+P SL+  + L  L+V+ N      P W
Sbjct:   552 RQNNLSGGFPEHI--FESLRSLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPFW 609

Query:   647 FGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCI----SNLTGM 702
                   ++ VL+LRSN FHGP+ + +     L+I+D++ N+ +G++P       S ++ +
Sbjct:   610 LSS-LQKLQVLVLRSNAFHGPINQAL--FPKLRIIDISHNHFNGSLPTEYFVEWSRMSSL 666

Query:   703 VTVK-----SFTGSVVYRE---------------ILPLVSLLDISRNNFSGEILSEVTNL 742
              T +     ++ GS  Y++               IL + + +D S N F GEI   +  L
Sbjct:   667 GTYEDGSNVNYLGSGYYQDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLL 726

Query:   743 KALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMXXXXXXXXXXXXXXX 802
             K L  +N S N FTG IP SIG + ALES+D S N+L GEIPQ +               
Sbjct:   727 KELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQ 786

Query:   803 XTGKIPLSTQLQSFNASSFAGN-DLCGAPLPKNC 835
              TG +P   Q  +   SSF GN  L G+ L + C
Sbjct:   787 LTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVC 820

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 2.6e-64, Sum P(2) = 2.6e-64
 Identities = 164/569 (28%), Positives = 284/569 (49%)

Query:   229 RGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG--TISDAIGNLTSVS 286
             +GL +L +L+ LDL  N +++S+  +L +   L+ L L +N  +G   + + I NLTS+ 
Sbjct:    73 KGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNLFKGGFPVQELI-NLTSLE 131

Query:   287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMR 345
              LDL  N    G++P       NL+  NLR + LS  + S  L     C    L+ L + 
Sbjct:   132 VLDLKFN-KFSGQLPTQ--ELTNLR--NLRALDLSNNKFSGSLQKQGICRLEQLQELRLS 186

Query:   346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFH 405
              +   G +     +F  L  L+L++N + G IP       ++  L + DN   G  S   
Sbjct:   187 RNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGLFSLGL 246

Query:   406 FANLTKLSWFRVGGNQLTFEVKHDWIP---PFQLVALGLHNCYVGSRFPQWLHSQKHLQY 462
                LT+L  F++       ++    +      QL ++ L +C +G + P +L  Q+ L+ 
Sbjct:   247 ITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNLG-KIPGFLWYQQELRV 305

Query:   463 LNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHG-KISNLTKNTQLLFLSVNSNNMSGP 521
             ++L N+ +S +FP   L++ ++L+ L +  N F    +    +  Q+L LSVN+ N   P
Sbjct:   306 IDLSNNILSGVFPTWLLENNTELQALLLQNNSFKTLTLPRTMRRLQILDLSVNNFNNQLP 365

Query:   522 --LPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSY 578
               + L+ ++L +L+ SNN F G++   +    N    +E + L+ N   G++P + +   
Sbjct:   366 KDVGLILASLRHLNLSNNEFLGNMPSSMARMEN----IEFMDLSYNNFSGKLPRNLFTGC 421

Query:   579 QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENE 638
              +L  LKLS+N+FSG +       TSL+ L +  N  +GKIP +L N   L+ +D+  N 
Sbjct:   422 YSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNL 481

Query:   639 FVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISN 698
               G IP W G  F  + VL + +N+  G +P ++ ++ +L +LDL+ N LSG++P   S+
Sbjct:   482 LTGTIPRWLGNFF--LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSS 539

Query:   699 LTGMVTV---KSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTF 755
               G +      + TGS+       L  LLD+  N  SG I     +  ++  +    N  
Sbjct:   540 DYGYILDLHNNNLTGSIPDTLWYGL-RLLDLRNNKLSGNI-PLFRSTPSISVVLLRENNL 597

Query:   756 TGRIPESIGTMRALESVDFSVNQLSGEIP 784
             TG+IP  +  +  +  +DF+ N+L+  IP
Sbjct:   598 TGKIPVELCGLSNVRMLDFAHNRLNESIP 626

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.2e-62, P = 5.2e-62
 Identities = 238/841 (28%), Positives = 378/841 (44%)

Query:    21 FFRGSSYHVGCLETERRALLRFKQDLQDPSNRLASW--TGDGDCCTWAGVACGNVTGHIL 78
             FF  SS  +  L +E  +L+ FK+ L++PS  L+SW  +     C W GV C  + G + 
Sbjct:    12 FFSFSSSAIVDLSSETTSLISFKRSLENPS-LLSSWNVSSSASHCDWVGVTC--LLGRVN 68

Query:    79 ELNLRNPSTSNPRSMLVGKVNPAXXXXXXXXXXXXXXNDFQGVQIPRFIGSMRNLRYLNL 138
              L+L  PS S     L G++                 N F G +IP  I ++++L+ L+L
Sbjct:    69 SLSL--PSLS-----LRGQIPKEISSLKNLRELCLAGNQFSG-KIPPEIWNLKHLQTLDL 120

Query:   139 SDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWL 198
             S     G++P  L  L  L +LDLS N+        L    F+    L S+++S  S   
Sbjct:   121 SGNSLTGLLPRLLSELPQLLYLDLSDNHFSGS----LPPSFFISLPALSSLDVSNNS--- 173

Query:   199 MATNTLPSLLEL-RLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYK 257
             ++    P + +L  LSN  +    + +  IP  + N++ LK+    S  FN  +P  + K
Sbjct:   174 LSGEIPPEIGKLSNLSNLYMG-LNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISK 232

Query:   258 FSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRG 317
                L  L+L  N L+ +I  + G L ++S L+L ++  L G IP  + N  +LKS+ L  
Sbjct:   233 LKHLAKLDLSYNPLKCSIPKSFGELHNLSILNL-VSAELIGLIPPELGNCKSLKSLMLSF 291

Query:   318 VHLSQEIS-EILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGL 376
               LS  +  E+ +I        L +     + + G L   +G+++ L +L LANN   G 
Sbjct:   292 NSLSGPLPLELSEI-------PLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGE 344

Query:   377 IPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQL 436
             IP        L+ L +  N L+G++          L    + GN L+  ++  +     L
Sbjct:   345 IPHEIEDCPMLKHLSLASNLLSGSIPR-ELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSL 403

Query:   437 VALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
               L L N  +    P+ L     L  L+L ++  +   P    KS + ++F     N+  
Sbjct:   404 GELLLTNNQINGSIPEDLWKLP-LMALDLDSNNFTGEIPKSLWKSTNLMEFT-ASYNRLE 461

Query:   497 GKI-SNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSN---NSFSGSISHFLCYRVN 552
             G + + +     L  L ++ N ++G +P     L  L   N   N F G I       + 
Sbjct:   462 GYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIP----VELG 517

Query:   553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGS------ITSLV 606
             +  SL  L L  N LQG+IPD   +   L+ L LS N  SG++P+   +      +  L 
Sbjct:   518 DCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLS 577

Query:   607 WLY------LRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR 660
             +L       L  NRLSG IP  L  C  L  + +  N   G IP     R + + +L L 
Sbjct:   578 FLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLS-RLTNLTILDLS 636

Query:   661 SNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV---KSFTGSVVYREI 717
              N   G +PK + +   LQ L+LA+N L+G IP+    L  +V +   K+     V   +
Sbjct:   637 GNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASL 696

Query:   718 LPLVSL--LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFS 775
               L  L  +D+S NN SGE+ SE++ ++ L  +    N FTG IP  +G +  LE +D S
Sbjct:   697 GNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVS 756

Query:   776 VNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPLSTQLQSFNASSFAGN-DLCGAPLPKN 834
              N LSGEIP  +                 G++P     Q  + +  +GN +LCG  +  +
Sbjct:   757 ENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSD 816

Query:   835 C 835
             C
Sbjct:   817 C 817

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 4.0e-61, P = 4.0e-61
 Identities = 239/858 (27%), Positives = 378/858 (44%)

Query:    31 CLETERRALLRFKQDLQ--DPS------------NRLASWTGDGDCCTWAGVACGNVTGH 76
             C   +R ALL FK + +   PS             +  SW  + DCC W GV C   +G 
Sbjct:    37 CRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNSDCCNWEGVTCNAKSGE 96

Query:    77 ILELNLRNPSTSNPRSMLVGKVNPAXXXXXXXXXXXXXXNDFQGVQIPRFIGSMRNLRYL 136
             ++EL+L   S S+         N +              NDF+G QI   I ++ +L YL
Sbjct:    97 VIELDL---SCSSLHGRFHS--NSSIRNLHFLTTLDLSFNDFKG-QITSSIENLSHLTYL 150

Query:   137 NLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASD 196
             +LS   F G I   +GNLS L +L+L  N         +  LS L  LDL S N      
Sbjct:   151 DLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDL-SYNRF-FGQ 208

Query:   197 WLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY 256
             +  +   L  L  L L +   + F   +  IP  + NL++L  LDL +N+F+  IP ++ 
Sbjct:   209 FPSSIGGLSHLTTLSLFS---NKF---SGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIG 262

Query:   257 KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLR 316
               S L  L L +N+  G I  + GNL  ++ L +  N  L G  P  + N   L  ++L 
Sbjct:   263 NLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDN-KLSGNFPNVLLNLTGLSLLSLS 321

Query:   317 GVHLS-------QEISEILDI------FSGCVSN------GLESLDMRSSSIYGHLT-DQ 356
                 +         +S ++D       F+G   +       L  + +  + + G L    
Sbjct:   322 NNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLEFGN 381

Query:   357 LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR 416
             +    NL  L++ NN+ +G IP S  +L  L  L I      G +    F++L  L    
Sbjct:   382 ISSPSNLYELDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQGPVDFSIFSHLKSLLDLN 441

Query:   417 VGGNQLTFEVKHDWIPPF--QLVALGLHNCYVGSRFPQWLHS--QKHLQYLNLLNSRISD 472
             +     T  +  ++   +  +L+ L L   +V +     +     + +Q L L    I++
Sbjct:   442 ISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPSQLIQSLYLSGCGITE 501

Query:   473 IFPIRFLKSASQLKFLDVGLNQFHGKISN-LTKNTQLLFLSVNSNNMSG-PLPLVSS-NL 529
              FP  F+++  +L FLD+  N+  G++ + L +   L ++++++N + G   P     +L
Sbjct:   502 -FP-EFVRTQHELGFLDISNNKIKGQVPDWLWRLPILYYVNLSNNTLIGFQRPSKPEPSL 559

Query:   530 VYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQN-LKVLKLSN 588
             +YL  SNN+F G I  F+C      +SL  L L+DN   G IP C    ++ L VL L  
Sbjct:   560 LYLLGSNNNFIGKIPSFIC----GLRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQ 615

Query:   589 NKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFG 648
             N  SG LP  +  I  L  L +  N+L GK+P SL   + L  L+V+ N      P W  
Sbjct:   616 NHLSGGLPKQIFEI--LRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLS 673

Query:   649 ERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIP-KCISNLTGMVTVKS 707
                 ++ VL+LRSN FHGP+ +       L+I+D++ N  +G +P +     + M ++  
Sbjct:   674 S-LPKLQVLVLRSNAFHGPIHEAT--FPELRIIDISHNRFNGTLPTEYFVKWSAMSSLGK 730

Query:   708 FTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMR 767
                    + +   +   D       G  +  V  L    +++FS N F G IP+SIG ++
Sbjct:   731 NEDQSNEKYMGSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLK 790

Query:   768 ALESVDFSVNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPLSTQLQSFNA-SSFAGNDL 826
              L  +  S N  SG +P SM                TG+IP      SF A  +F+ N L
Sbjct:   791 ELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQL 850

Query:   827 CG-AP-----LPKNCTMF 838
              G  P     L +NC+ F
Sbjct:   851 AGLVPGGQQFLTQNCSAF 868

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 219/740 (29%), Positives = 340/740 (45%)

Query:   119 QGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYL---YVDNVWWL 175
             +GV  P  I ++  L+ L+L+   F G IP ++G L++L  L L  NY        +W L
Sbjct:    85 EGVLSPA-IANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWEL 143

Query:   176 SGLSFLEHLDLRSVNLS-KASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNL 234
               + +L   DLR+  LS    + +  T++L  L+    +N        L   IP  L +L
Sbjct:   144 KNIFYL---DLRNNLLSGDVPEEICKTSSLV-LIGFDYNN--------LTGKIPECLGDL 191

Query:   235 TSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINI 294
               L+      NH   SIP  +   + L  L+L  N L G I    GNL ++  L L+ N+
Sbjct:   192 VHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENL 251

Query:   295 GLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLT 354
              L+G IP  + N  +L  + L    L+ +I   L      V   L++L +  + +   + 
Sbjct:   252 -LEGDIPAEIGNCSSLVQLELYDNQLTGKIPAEL---GNLVQ--LQALRIYKNKLTSSIP 305

Query:   355 DQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSW 414
               L +   L  L L+ N +VG I E  G L +L  L ++ N   G   +    NL  L+ 
Sbjct:   306 SSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQ-SITNLRNLTV 364

Query:   415 FRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIF 474
               VG N ++ E+  D      L  L  H+  +    P  + +   L+ L+L +++++   
Sbjct:   365 LTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEI 424

Query:   475 PIRFLKSASQLKFLDVGLNQFHGKISNLTKN-TQLLFLSVNSNNMSGPL-PLVSS--NLV 530
             P  F      L F+ +G N F G+I +   N + L  LSV  NN++G L PL+     L 
Sbjct:   425 PRGF--GRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLR 482

Query:   531 YLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK 590
              L  S NS +G I       +   K L  L L  N   G IP    +   L+ L++ +N 
Sbjct:   483 ILQVSYNSLTGPIPR----EIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSND 538

Query:   591 FSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGER 650
               G +P  +  +  L  L L  N+ SG+IP       +L  L +  N+F G+IP    + 
Sbjct:   539 LEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASL-KS 597

Query:   651 FSRMLVLILRSNQFHGPLP-KTICDLAFLQI-LDLADNNLSGAIPKCISNLTGMVTV--- 705
              S +    +  N   G +P + +  L  +Q+ L+ ++N L+G IPK +  L  +  +   
Sbjct:   598 LSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLS 657

Query:   706 -KSFTGSVVYR-EILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRIPES 762
                F+GS+    +    V  LD S+NN SG I  EV   +  + S+N S N+F+G IP+S
Sbjct:   658 NNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQS 717

Query:   763 IGTMRALESVDFSVNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPLSTQLQSFNASSFA 822
              G M  L S+D S N L+GEIP+S+                 G +P S   ++ NAS   
Sbjct:   718 FGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLM 777

Query:   823 GN-DLCGAPLP-KNCTMFMK 840
             GN DLCG+  P K CT+  K
Sbjct:   778 GNTDLCGSKKPLKPCTIKQK 797

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 3.3e-59, P = 3.3e-59
 Identities = 226/829 (27%), Positives = 394/829 (47%)

Query:    31 CLETERRALLRFKQDLQDPSNR------LASWTGD--GDCCTWAGVACGNVTGHILELNL 82
             C+E ER ALL  K+ L   S        L +WT D   DCC W G+ C   +G ++EL++
Sbjct:    13 CIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTKSDCCQWDGIKCNRTSGRVIELSV 72

Query:    83 RNPSTSNPRSMLVGKVNPAXXXXXXXXXXXXXXNDFQG----VQIPRFIGSMRNLRYLNL 138
              +        + +  ++P               N+F G    V+  R +  +RNL+ ++L
Sbjct:    73 GDMYFKESSPLNLSLLHP-FEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSGLRNLKIMDL 131

Query:   139 SDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWL 198
             S   F     P L   + L  L L+ N +  D  + + GL  L +L+L  +  +K +  +
Sbjct:   132 STNYFNYSTFPFLNAATSLTTLILTYNEM--DGPFPIKGLKDLTNLELLDLRANKLNGSM 189

Query:   199 MATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY-K 257
                  L  L  L LS+   + F +  S   + LQNL +L+ L L  NH +  IP  ++ K
Sbjct:   190 QELIHLKKLKALDLSS---NKFSS--SMELQELQNLINLEVLGLAQNHVDGPIPIEVFCK 244

Query:   258 FSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRG 317
                L  L+L+ N   G I   +G+L  +  LDLS N  L G +P S ++  +L+ ++L  
Sbjct:   245 LKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSN-QLSGDLPSSFSSLESLEYLSLSD 303

Query:   318 VHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLI 377
              +     S  L+  +  ++N    + +R  S+    +  L Q + L  ++L++N++ G I
Sbjct:   304 NNFDGSFS--LNPLTN-LTNLKFVVVLRFCSLEKIPSFLLYQ-KKLRLVDLSSNNLSGNI 359

Query:   378 PESFGQLSTLRELQIYDNKLNGTLSEFHFANLT-KLSWFRVGGNQL-TFEVKHDWIPPFQ 435
             P     L+   EL++   + N + + F    +   L  F    N +  F  K D   P  
Sbjct:   360 PTWL--LTNNPELEVLQLQ-NNSFTIFPIPTMVHNLQIFDFSANNIGKFPDKMDHALP-N 415

Query:   436 LVAL-GLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQ 494
             LV L G +N + G  FP  +   K++ +L+L  +  S   P  F+     + FL +  N+
Sbjct:   416 LVRLNGSNNGFQGY-FPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNK 474

Query:   495 FHGK-ISNLTKNTQLLFLSVNSNNMSGPLP--LVSSNLV-YLDFSNNSFSGSISHFLCYR 550
             F G+ +   T    L  L +++N  +G +   L +S ++  LD SNN  SG+I  +L   
Sbjct:   475 FSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLF-- 532

Query:   551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYL 610
               E   L+ + +++N+L+G IP   +    L  L LS N+FSG LP+ + S    ++++L
Sbjct:   533 --EFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELG-IYMFL 589

Query:   611 RKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPK 670
               N  +G IP +L     +  LD+  N+  G+IP  F +  S + +L+L+ N   G +P+
Sbjct:   590 HNNNFTGPIPDTLLKSVQI--LDLRNNKLSGSIPQ-FDDTQS-INILLLKGNNLTGSIPR 645

Query:   671 TICDLAFLQILDLADNNLSGAIPKCISNLT-GMVTVKSFTGSVVYREILPLVSLLDISRN 729
              +CDL+ +++LDL+DN L+G IP C+SNL+ G +   +   ++     L     +++ ++
Sbjct:   646 ELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALNIP-PSFLQTSLEMELYKS 704

Query:   730 NFSGEILSEVTNLKALQSINFS----FNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQ 785
              F  + +    +      I F+    +++++GR   S G +R +  +D S N+LSG IP 
Sbjct:   705 TFLVDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPT 764

Query:   786 SMXXXXXXXXXXXXXXXXTGKIPLS-TQLQSFNASSFAGNDLCGAPLPK 833
              +                 G IP S ++L    +   + N L G+ +P+
Sbjct:   765 ELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGS-IPQ 812

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	840
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-61
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-56
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	7e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  225 bits (574), Expect = 1e-61
 Identities = 208/661 (31%), Positives = 309/661 (46%), Gaps = 104/661 (15%)

Query: 35  ERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSML 94
           E   LL FK  + DP   L++W    D C W G+ C N +  ++ ++L   + S      
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSS-RVVSIDLSGKNIS------ 82

Query: 95  VGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFI-GSMRNLRYLNLSDTQFVGMIPPQLGN 153
            GK++ A+  L ++  ++LS+N   G  IP  I  +  +LRYLNLS+  F G IP   G+
Sbjct: 83  -GKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GS 138

Query: 154 LSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLS 213
           + +L+ LDLS+N L  +    +   S L+ LDL                           
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG------------------------- 173

Query: 214 NCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG 273
                    L   IP  L NLTSL+ L L SN     IP  L +   L+ + L  N+L G
Sbjct: 174 -------NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226

Query: 274 TISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG 333
            I   IG LTS++ LDL  N  L G IP S+ N  NL+ + L    LS  I     IFS 
Sbjct: 227 EIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP--SIFS- 282

Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393
                L SLD+  +S+ G + + + Q +NL  L+L +N+  G IP +   L  L+ LQ++
Sbjct: 283 --LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 394 DNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQW 453
            NK +G +      NL K        N LT               L L    +    P+ 
Sbjct: 341 SNKFSGEIP----KNLGK-------HNNLT--------------VLDLSTNNLTGEIPEG 375

Query: 454 LHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN-LTKNTQLLFLS 512
           L S  +L  L L ++ +    P + L +   L+ + +  N F G++ +  TK        
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIP-KSLGACRSLRRVRLQDNSFSGELPSEFTK-------- 426

Query: 513 VNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP 572
                    LPLV     +LD SNN+  G I+     R  +  SL+ L L  N   G +P
Sbjct: 427 ---------LPLVY----FLDISNNNLQGRINS----RKWDMPSLQMLSLARNKFFGGLP 469

Query: 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632
           D + S + L+ L LS N+FSG +P  LGS++ L+ L L +N+LSG+IP  L +C  L SL
Sbjct: 470 DSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528

Query: 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAI 692
           D+  N+  G IP  F E    +  L L  NQ  G +PK + ++  L  ++++ N+L G++
Sbjct: 529 DLSHNQLSGQIPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Query: 693 P 693
           P
Sbjct: 588 P 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  210 bits (535), Expect = 1e-56
 Identities = 175/598 (29%), Positives = 290/598 (48%), Gaps = 83/598 (13%)

Query: 234 LTSLKHLDLDSNHFNSSIPDWLYKFS-PLECLNLRNNSLQGTISDAIGNLTSVSWLDLSI 292
           L  ++ ++L +N  +  IPD ++  S  L  LNL NN+  G+I    G++ ++  LDLS 
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN 149

Query: 293 NIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGH 352
           N+ L G IP  + +F +LK ++L G  L  +I   L   +      LE L + S+ + G 
Sbjct: 150 NM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS-----LEFLTLASNQLVGQ 203

Query: 353 LTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
           +  +LGQ ++L  + L  N++ G IP   G L++L  L +  N L G +      NL  L
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNL 262

Query: 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472
            +  +  N+L+  +        +L++L L +  +    P+ +   ++L+ L+L ++  + 
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322

Query: 473 IFPIRFLKSASQLKFLDVGLNQFHGKI-SNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVY 531
             P   L S  +L+ L +  N+F G+I  NL K+                     +NL  
Sbjct: 323 KIP-VALTSLPRLQVLQLWSNKFSGEIPKNLGKH---------------------NNLTV 360

Query: 532 LDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKF 591
           LD S N+ +G I   LC   N  K    L L  N L+GEIP    + ++L+ ++L +N F
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFK----LILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 592 SGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERF 651
           SG LP+    +  + +L +  N L G+I     +  +L  L +  N+F G +P  FG + 
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR 476

Query: 652 SRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGS 711
                                     L+ LDL+ N  SGA+P+ + +L+ ++        
Sbjct: 477 --------------------------LENLDLSRNQFSGAVPRKLGSLSELMQ------- 503

Query: 712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES 771
                       L +S N  SGEI  E+++ K L S++ S N  +G+IP S   M  L  
Sbjct: 504 ------------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551

Query: 772 VDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCG 828
           +D S NQLSGEIP+++ ++  L  +N+S+N+L G +P +    + NAS+ AGN DLCG
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.0 bits (231), Expect = 3e-19
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 8/188 (4%)

Query: 651 FSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMV-----TV 705
            SR++ + L      G +   I  L ++Q ++L++N LSG IP  I   +  +     + 
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 706 KSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGT 765
            +FTGS+  R  +P +  LD+S N  SGEI +++ +  +L+ ++   N   G+IP S+  
Sbjct: 128 NNFTGSIP-RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 766 MRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLST-QLQSFNASSFAGN 824
           + +LE +  + NQL G+IP+ +  +  L  + L  NNL+G+IP     L S N      N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 825 DLCGAPLP 832
           +L G P+P
Sbjct: 247 NLTG-PIP 253

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 85.6 bits (212), Expect = 3e-17
 Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 7/121 (5%)

Query: 720 LVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQL 779
            +  L +      G I ++++ L+ LQSIN S N+  G IP S+G++ +LE +D S N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 780 SGEIPQSMSSLTFLNHLNLSNNNLTGKIPLST-----QLQSFNASSFAGNDLCGAPLPKN 834
           +G IP+S+  LT L  LNL+ N+L+G++P +         SFN +  AG  LCG P  + 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG--LCGIPGLRA 536

Query: 835 C 835
           C
Sbjct: 537 C 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.3 bits (180), Expect = 3e-13
 Identities = 38/94 (40%), Positives = 54/94 (57%)

Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
           ++GL L +  L+G IP+     ++L+ + LS N   GN+P SLGSITSL  L L  N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGER 650
           G IP SL   T+L  L+++ N   G +P   G R
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 30/69 (43%), Positives = 45/69 (65%)

Query: 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR 614
           + L+ + L+ N ++G IP    S  +L+VL LS N F+G++P SLG +TSL  L L  N 
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 615 LSGKIPISL 623
           LSG++P +L
Sbjct: 502 LSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 6e-10
 Identities = 49/145 (33%), Positives = 66/145 (45%), Gaps = 21/145 (14%)

Query: 32  LETERRALLRFKQDLQDPSNRLASWTGDGDCCT-----WAGVAC--GNVTGH--ILELNL 82
           L  E  AL   K  L  P  R   W  +GD C      W+G  C   +  G   I  L L
Sbjct: 370 LLEEVSALQTLKSSLGLPL-RFG-W--NGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGL 425

Query: 83  RNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQ 142
            N         L G +   +  L+HL  ++LS N  +G  IP  +GS+ +L  L+LS   
Sbjct: 426 DNQG-------LRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNS 477

Query: 143 FVGMIPPQLGNLSDLQFLDLSSNYL 167
           F G IP  LG L+ L+ L+L+ N L
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 32 LETERRALLRFKQDLQ-DPSNRLASWTG-DGDCCTWAGVAC 70
          L  +R ALL FK  L  DPS  L+SW     D C+W GV C
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 19/99 (19%)

Query: 666 GPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLD 725
           G +P  I  L  LQ ++L+ N++ G IP  + ++T +                    +LD
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE-------------------VLD 472

Query: 726 ISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG 764
           +S N+F+G I   +  L +L+ +N + N+ +GR+P ++G
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 30/117 (25%)

Query: 285 VSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM 344
           +  L L  N GL+G IP  ++   +L+S+NL G                           
Sbjct: 420 IDGLGLD-NQGLRGFIPNDISKLRHLQSINLSG--------------------------- 451

Query: 345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
             +SI G++   LG   +L  L+L+ NS  G IPES GQL++LR L +  N L+G +
Sbjct: 452 --NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 14/108 (12%)

Query: 173 WWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQ 232
           W++ GL  L++  LR       +D     + L  L  + LS  S+         IP  L 
Sbjct: 418 WFIDGLG-LDNQGLRGF---IPNDI----SKLRHLQSINLSGNSIR------GNIPPSLG 463

Query: 233 NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIG 280
           ++TSL+ LDL  N FN SIP+ L + + L  LNL  NSL G +  A+G
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 339 LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN 398
           ++ L + +  + G + + + + R+L ++NL+ NSI G IP S G +++L  L +  N  N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 399 GTLSEFHFANLTKLSWFRVGGNQLTFEV 426
           G++ E     LT L    + GN L+  V
Sbjct: 480 GSIPE-SLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 69/278 (24%), Positives = 99/278 (35%), Gaps = 64/278 (23%)

Query: 125 RFIGSM----RNLRYLNLSDTQFVGMIPPQ-------LGNLSDLQFLDLSSNYLYVDNVW 173
           + + S      +L+ L LS     G IP         L     LQ LDLS N L  D   
Sbjct: 41  KALASALRPQPSLKELCLSL-NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99

Query: 174 WLSGL---SFLEHLDLRSVNLSK-------------------------------ASDWLM 199
            L  L   S L+ L L +  L                                       
Sbjct: 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159

Query: 200 ATNTLPSLLELRLSNCSLHH--FPTLASPIPRGLQNLTSLKHLDLDSNHFN----SSIPD 253
           A      L EL L+N  +       LA     GL+   +L+ LDL++N       S++ +
Sbjct: 160 ALRANRDLKELNLANNGIGDAGIRALA----EGLKANCNLEVLDLNNNGLTDEGASALAE 215

Query: 254 WLYKFSPLECLNLRNNSLQG----TISDA-IGNLTSVSWLDLSIN-IGLQGRIP--RSMA 305
            L     LE LNL +N+L       ++ A +    S+  L LS N I   G       +A
Sbjct: 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA 275

Query: 306 NFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLD 343
              +L  ++LRG    +E +++L        N LESL 
Sbjct: 276 EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 362 NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ 421
           NL +L+L+NN +  +   +F  L  L+ L +  N L  ++S   F+ L  L    + GN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 422 L 422
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 9e-05
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 438 ALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHG 497
            LGL N  +    P  +   +HLQ +NL  + I    P     S + L+ LD+  N F+G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNG 480

Query: 498 KI-SNLTKNTQLLFLSVNSNNMSGPLP 523
            I  +L + T L  L++N N++SG +P
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 511 LSVNSNNMSGPLPLVSSNLVYL---DFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYL 567
           L +++  + G +P   S L +L   + S NS  G+I   L        SLE L L+ N  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----GSITSLEVLDLSYNSF 478

Query: 568 QGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLG 600
            G IP+      +L++L L+ N  SG +P +LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 37/197 (18%)

Query: 529 LVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYL---QGEIPD-------CWMSY 578
           LV +D S N+        LC  +   ++L  +  +D +    + E+           +  
Sbjct: 32  LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC 91

Query: 579 QNLKVLKLSNNKFSGNLPNSLG----SITSLVWLYLRKNRL----SGKIPISL------- 623
             L+ + LS+N F    P  LG    S T LV L L  N L     G+I  +L       
Sbjct: 92  PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK 151

Query: 624 --KNCTALASLDVDENEFV-GNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAF--- 677
              +   L  +    N    G+         S   +  ++  Q +G  P+ +  LAF   
Sbjct: 152 KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKI-QQNGIRPEGVTMLAFLGL 210

Query: 678 -----LQILDLADNNLS 689
                L++LDL DN  +
Sbjct: 211 FYSHSLEVLDLQDNTFT 227

Length = 388

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 15/221 (6%)

Query: 476 IRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNM---SGPLPLVSSNLVYL 532
              L +   L  LD+ LN+    IS L + T L  L +++NN+      + L+ SNL  L
Sbjct: 86  SENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKEL 145

Query: 533 DFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFS 592
           D S+N         L   +    +L+ L L+ N L  ++P    +  NL  L LS NK S
Sbjct: 146 DLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 593 GNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFS 652
            +LP  +  +++L  L L  N +  ++  SL N   L+ L++  N+   ++P   G   +
Sbjct: 200 -DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSN 256

Query: 653 RMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIP 693
              + +  +         ++  L  L+ LDL+ N+LS A+P
Sbjct: 257 LETLDLSNNQISSIS---SLGSLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 27/190 (14%)

Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDL 675
           S     +L N   L SLD++ N    NI           L L   +N     +P  I  L
Sbjct: 82  SLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDL--DNNNI-TDIPPLIGLL 138

Query: 676 AF-LQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE 734
              L+ LDL+DN +  ++P  + NL  +                     LD+S N+ S +
Sbjct: 139 KSNLKELDLSDNKIE-SLPSPLRNLPNLKN-------------------LDLSFNDLS-D 177

Query: 735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLN 794
           +   ++NL  L +++ S N  +  +P  I  + ALE +D S N +  E+  S+S+L  L+
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLS 235

Query: 795 HLNLSNNNLT 804
            L LSNN L 
Sbjct: 236 GLELSNNKLE 245

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 181 LEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHL 240
           L+ LDL +  L+   D   A   LP+L  L LS  +L          P     L SL+ L
Sbjct: 2   LKSLDLSNNRLTVIPD--GAFKGLPNLKVLDLSGNNLTSIS------PEAFSGLPSLRSL 53

Query: 241 DLDSNHF 247
           DL  N+ 
Sbjct: 54  DLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 19/58 (32%), Positives = 26/58 (44%)

Query: 236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
           +LK LDL +N               L+ L+L  N+L     +A   L S+  LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 72/247 (29%), Positives = 107/247 (43%), Gaps = 28/247 (11%)

Query: 147 IPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPS 206
               L NL  L  LDL+ N L  +    L  L+ L  LDL + N++     +       +
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLI--GLLKSN 141

Query: 207 LLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNL 266
           L EL LS+  +         +P  L+NL +LK+LDL  N   S +P  L   S L  L+L
Sbjct: 142 LKELDLSDNKIES-------LPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDL 193

Query: 267 RNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISE 326
             N +   +   I  L+++  LDLS N  ++  +  S++N  NL  + L    L      
Sbjct: 194 SGNKIS-DLPPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLEDLPES 250

Query: 327 ILDIFSGCVSNGLESLDMRS---SSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ 383
           I         + LE+LD+ +   SSI       LG   NL  L+L+ NS+   +P     
Sbjct: 251 I------GNLSNLETLDLSNNQISSI-----SSLGSLTNLRELDLSGNSLSNALPLIALL 299

Query: 384 LSTLREL 390
           L  L  L
Sbjct: 300 LLLLELL 306

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY 166
           +L  LDLS+N    +        + NL+ L+LS      + P     L  L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 167 L 167
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
            L+SLD+ ++ +            NL  L+L+ N++  + PE+F  L +LR L +  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	840
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
PLN03150	623	hypothetical protein; Provisional	99.51
PLN03150	623	hypothetical protein; Provisional	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.31
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
PRK15386	426	type III secretion protein GogB; Provisional	98.17
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
KOG4341	483	consensus F-box protein containing LRR [General fu	97.84
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.8
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.67
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.62
KOG4341	483	consensus F-box protein containing LRR [General fu	97.57
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.12
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.42
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.01
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.94
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.73
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.41
KOG4308	478	consensus LRR-containing protein [Function unknown	93.74
KOG4308	478	consensus LRR-containing protein [Function unknown	93.64
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.62
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.13
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.34
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.41
smart00370	26	LRR Leucine-rich repeats, outliers.	88.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.89
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.0
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.25
smart00370	26	LRR Leucine-rich repeats, outliers.	84.7
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.23
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.0

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.5e-71  Score=677.77  Aligned_cols=583  Identities=36%  Similarity=0.572  Sum_probs=417.2

Q ss_pred             cHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEE
Q 003200           32 LETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYL  111 (840)
Q Consensus        32 ~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  111 (840)
                      .++|+.||++||+++.+|.+.+.+|..+.+||.|.||+|+. .++|+.|+|+++       .+.|.+++++..+++|++|
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~-------~i~~~~~~~~~~l~~L~~L   98 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGK-------NISGKISSAIFRLPYIQTI   98 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCC-------CccccCChHHhCCCCCCEE
Confidence            56899999999999988888899998778999999999985 579999999997       7788889999999999999


Q ss_pred             eCCCCCCCCCCcccccc-CCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcC
Q 003200          112 DLSSNDFQGVQIPRFIG-SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVN  190 (840)
Q Consensus       112 ~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~  190 (840)
                      +|++|.+.+. +|..+. .+++|++|+|++|++++.+|.  +.+++|++|++++|.+....+..++++++|++|++++|.
T Consensus        99 ~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113         99 NLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             ECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence            9999999874 777654 899999999999999988875  467788888888877654444444444444444444443


Q ss_pred             CCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCc
Q 003200          191 LSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS  270 (840)
Q Consensus       191 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  270 (840)
                      +.+                          ..      |..++++++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus       176 l~~--------------------------~~------p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        176 LVG--------------------------KI------PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             ccc--------------------------cC------ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            322                          11      1445555555555555555555555555555555555555555


Q ss_pred             cccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCccc
Q 003200          271 LQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY  350 (840)
Q Consensus       271 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  350 (840)
                      +++.+|..++++++|++|++++ +.+.+.+|..++++++|+.|+++                             +|.+.
T Consensus       224 l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~-----------------------------~n~l~  273 (968)
T PLN00113        224 LSGEIPYEIGGLTSLNHLDLVY-NNLTGPIPSSLGNLKNLQYLFLY-----------------------------QNKLS  273 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcC-ceeccccChhHhCCCCCCEEECc-----------------------------CCeee
Confidence            5555555555555555555555 34444445444444444444444                             44444


Q ss_pred             ccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCC
Q 003200          351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDW  430 (840)
Q Consensus       351 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  430 (840)
                      +.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.++. .+..+                     
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l---------------------  331 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSL---------------------  331 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcC---------------------
Confidence            44555555566666666666666666666666666777777766666544433 22222                     


Q ss_pred             CCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccE
Q 003200          431 IPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLF  510 (840)
Q Consensus       431 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~  510 (840)
                                                 ++|+.|++++|++.+..|..+                                
T Consensus       332 ---------------------------~~L~~L~L~~n~l~~~~p~~l--------------------------------  352 (968)
T PLN00113        332 ---------------------------PRLQVLQLWSNKFSGEIPKNL--------------------------------  352 (968)
T ss_pred             ---------------------------CCCCEEECcCCCCcCcCChHH--------------------------------
Confidence                                       223333333333222222111                                


Q ss_pred             EEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCc
Q 003200          511 LSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK  590 (840)
Q Consensus       511 L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  590 (840)
                                                               ..+++|+.|++++|.+++.+|..+..+++|+.|++++|+
T Consensus       353 -----------------------------------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  391 (968)
T PLN00113        353 -----------------------------------------GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS  391 (968)
T ss_pred             -----------------------------------------hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence                                                     112345555555555555555555556666666666666


Q ss_pred             CCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCc
Q 003200          591 FSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPK  670 (840)
Q Consensus       591 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~  670 (840)
                      +.+.+|..+..+++|+.|++++|++++..|..+.++++|+.|++++|.+++.+|..+. .+++|+.|++++|++.+.+|.
T Consensus       392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~  470 (968)
T PLN00113        392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPD  470 (968)
T ss_pred             ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCc
Confidence            6666666666666666666666666666666666666777777777777666666655 567777777777777766666


Q ss_pred             cccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeC
Q 003200          671 TICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINF  750 (840)
Q Consensus       671 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  750 (840)
                      .+ ..++|+.|++++|++++.+|..+.++++|                   +.|++++|++++.+|..+.++++|++|+|
T Consensus       471 ~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  530 (968)
T PLN00113        471 SF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL-------------------MQLKLSENKLSGEIPDELSSCKKLVSLDL  530 (968)
T ss_pred             cc-ccccceEEECcCCccCCccChhhhhhhcc-------------------CEEECcCCcceeeCChHHcCccCCCEEEC
Confidence            54 35788999999999998888888887777                   89999999999999999999999999999


Q ss_pred             CCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCC
Q 003200          751 SFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGA  829 (840)
Q Consensus       751 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~  829 (840)
                      ++|.+++.+|..++.+++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|..++|.++.+++|.|| ++||.
T Consensus       531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  610 (968)
T PLN00113        531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG  610 (968)
T ss_pred             CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 99986


Q ss_pred             C
Q 003200          830 P  830 (840)
Q Consensus       830 ~  830 (840)
                      +
T Consensus       611 ~  611 (968)
T PLN00113        611 D  611 (968)
T ss_pred             c
Confidence            5

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-55  Score=539.46  Aligned_cols=495  Identities=32%  Similarity=0.529  Sum_probs=352.0

Q ss_pred             CcccCCCCCCEEECcCCCCCCCCccccc-CCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCC
Q 003200          229 RGLQNLTSLKHLDLDSNHFNSSIPDWLY-KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF  307 (840)
Q Consensus       229 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l  307 (840)
                      ..+..+++|++|++++|++.+.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|++++ +.+.+.+|..++.+
T Consensus        87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~-n~~~~~~p~~~~~l  163 (968)
T PLN00113         87 SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN-NMLSGEIPNDIGSF  163 (968)
T ss_pred             hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcC-CcccccCChHHhcC
Confidence            3444455555555555555444444332 445555555555555444442  2344455555544 34444444444444


Q ss_pred             CCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCC
Q 003200          308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTL  387 (840)
Q Consensus       308 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  387 (840)
                      ++|++|++++|.+.+.+|..+..+.     +|+.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|
T Consensus       164 ~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  238 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL  238 (968)
T ss_pred             CCCCEEECccCcccccCChhhhhCc-----CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence            4444444444444444444444443     45555555555555555555555555555555555555555555555555


Q ss_pred             CEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccC
Q 003200          388 RELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLN  467 (840)
Q Consensus       388 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~  467 (840)
                      ++|++++|.+.+.+|. .+.++++|++|++++|.+.                        +..|..+..+++|++|++++
T Consensus       239 ~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~------------------------~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        239 NHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLS------------------------GPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             CEEECcCceeccccCh-hHhCCCCCCEEECcCCeee------------------------ccCchhHhhccCcCEEECcC
Confidence            5555555555544444 4555555555555444443                        34455555666666666666


Q ss_pred             CCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchh
Q 003200          468 SRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFL  547 (840)
Q Consensus       468 n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  547 (840)
                      |++.+..|..+ ..+++|+.|++++|.+.                                            +..|.. 
T Consensus       294 n~l~~~~p~~~-~~l~~L~~L~l~~n~~~--------------------------------------------~~~~~~-  327 (968)
T PLN00113        294 NSLSGEIPELV-IQLQNLEILHLFSNNFT--------------------------------------------GKIPVA-  327 (968)
T ss_pred             CeeccCCChhH-cCCCCCcEEECCCCccC--------------------------------------------CcCChh-
Confidence            66666555443 23333444433333332                                            222222 


Q ss_pred             hhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCC
Q 003200          548 CYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCT  627 (840)
Q Consensus       548 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  627 (840)
                         +..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..++
T Consensus       328 ---~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~  404 (968)
T PLN00113        328 ---LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR  404 (968)
T ss_pred             ---HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence               23367899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccccc
Q 003200          628 ALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKS  707 (840)
Q Consensus       628 ~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  707 (840)
                      +|+.|++++|++++.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. .++|     
T Consensus       405 ~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L-----  477 (968)
T PLN00113        405 SLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRL-----  477 (968)
T ss_pred             CCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccc-----
Confidence            999999999999999999887 799999999999999999999999999999999999999988887653 2444     


Q ss_pred             ccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccc
Q 003200          708 FTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSM  787 (840)
Q Consensus       708 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  787 (840)
                                    +.||+++|++++.+|..+.++++|+.|++++|++.+.+|..++++++|++|+|++|++++.+|..+
T Consensus       478 --------------~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  543 (968)
T PLN00113        478 --------------ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF  543 (968)
T ss_pred             --------------eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhH
Confidence                          999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCeEeccCCcccccCCCC-CcCCCcCcCCCCCCCC
Q 003200          788 SSLTFLNHLNLSNNNLTGKIPLS-TQLQSFNASSFAGNDL  826 (840)
Q Consensus       788 ~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~l  826 (840)
                      ..+++|++|++++|+++|.+|.. ..+..+....+.+|.+
T Consensus       544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            99999999999999999999975 3344455555566633

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1e-40  Score=327.64  Aligned_cols=492  Identities=24%  Similarity=0.331  Sum_probs=251.7

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEE
Q 003200          106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLD  185 (840)
Q Consensus       106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  185 (840)
                      ..++.|++++|.+.  .+...+.++..|.+|++++|+++ .+|.+++.+.+++.++.++|.+..                
T Consensus        45 v~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~----------------  105 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE----------------  105 (565)
T ss_pred             cchhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh----------------
Confidence            34566677777766  34555666777777777777766 556667777666666666664431                


Q ss_pred             ccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 003200          186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLN  265 (840)
Q Consensus       186 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  265 (840)
                                 .+..++.+.+|..+++++|.+...+       +.++.+-.|..++..+|+++ ..|..+..+.+|..++
T Consensus       106 -----------lp~~i~s~~~l~~l~~s~n~~~el~-------~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~  166 (565)
T KOG0472|consen  106 -----------LPEQIGSLISLVKLDCSSNELKELP-------DSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLD  166 (565)
T ss_pred             -----------ccHHHhhhhhhhhhhccccceeecC-------chHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhh
Confidence                       1112222222222222222222221       34444445555555555544 3344444444444444


Q ss_pred             cccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEcc
Q 003200          266 LRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR  345 (840)
Q Consensus       266 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  345 (840)
                      +.+|.+....| ..-+++.|+++|.-.                                                     
T Consensus       167 ~~~n~l~~l~~-~~i~m~~L~~ld~~~-----------------------------------------------------  192 (565)
T KOG0472|consen  167 LEGNKLKALPE-NHIAMKRLKHLDCNS-----------------------------------------------------  192 (565)
T ss_pred             ccccchhhCCH-HHHHHHHHHhcccch-----------------------------------------------------
Confidence            44444442222 222244444444333                                                     


Q ss_pred             CCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCccccee
Q 003200          346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFE  425 (840)
Q Consensus       346 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~  425 (840)
                       |-+ +.+|+.++.+.+|..|++..|++.. .| .|.+|..|++++++.|++. .+|+....+++++..||+.+|+++  
T Consensus       193 -N~L-~tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk--  265 (565)
T KOG0472|consen  193 -NLL-ETLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK--  265 (565)
T ss_pred             -hhh-hcCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc--
Confidence             222 2244455556666666666666653 33 5666666666666666664 556555556666666666666655  


Q ss_pred             ccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCC
Q 003200          426 VKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKN  505 (840)
Q Consensus       426 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  505 (840)
                                             ..|+.+.-+.+|++||+++|.|++..+..  +.+ .|+.|.+.+|.+...-..+...
T Consensus       266 -----------------------e~Pde~clLrsL~rLDlSNN~is~Lp~sL--gnl-hL~~L~leGNPlrTiRr~ii~~  319 (565)
T KOG0472|consen  266 -----------------------EVPDEICLLRSLERLDLSNNDISSLPYSL--GNL-HLKFLALEGNPLRTIRREIISK  319 (565)
T ss_pred             -----------------------cCchHHHHhhhhhhhcccCCccccCCccc--ccc-eeeehhhcCCchHHHHHHHHcc
Confidence                                   34444444555555555555555544321  222 3444444444443221111100


Q ss_pred             ---CcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcC
Q 003200          506 ---TQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLK  582 (840)
Q Consensus       506 ---~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  582 (840)
                         .-|++|.=   ++...-+....       ++-.-.+..+..                       ..| ......+.+
T Consensus       320 gT~~vLKyLrs---~~~~dglS~se-------~~~e~~~t~~~~-----------------------~~~-~~~~~i~tk  365 (565)
T KOG0472|consen  320 GTQEVLKYLRS---KIKDDGLSQSE-------GGTETAMTLPSE-----------------------SFP-DIYAIITTK  365 (565)
T ss_pred             cHHHHHHHHHH---hhccCCCCCCc-------ccccccCCCCCC-----------------------ccc-chhhhhhhh
Confidence               00010000   00000000000       000000000000                       011 111233444


Q ss_pred             EEEccCCcCCCCCCcccCCC--CcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEcc
Q 003200          583 VLKLSNNKFSGNLPNSLGSI--TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR  660 (840)
Q Consensus       583 ~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~  660 (840)
                      .|+++.-+++....+.|..-  .-....++++|++. ++|..+..++.+.+.-+..|+..+.+|..+. .+++|..|+++
T Consensus       366 iL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~-~l~kLt~L~L~  443 (565)
T KOG0472|consen  366 ILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELS-QLQKLTFLDLS  443 (565)
T ss_pred             hhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHH-hhhcceeeecc
Confidence            55555555552222222211  11455556666655 5555555444443332222233335555554 46666666666


Q ss_pred             CCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCccccc
Q 003200          661 SNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVT  740 (840)
Q Consensus       661 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~  740 (840)
                      +|-+. .+|..++.+..||+||+|.|+|. .+|+++..+..+                   +.+-.++|++....|+.+.
T Consensus       444 NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l-------------------Etllas~nqi~~vd~~~l~  502 (565)
T KOG0472|consen  444 NNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL-------------------ETLLASNNQIGSVDPSGLK  502 (565)
T ss_pred             cchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH-------------------HHHHhccccccccChHHhh
Confidence            66555 55666677777888888888887 778777766555                   5666677888766666688


Q ss_pred             CCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200          741 NLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       741 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                      ++.+|++|||.+|.+. .+|..+++|++|++|++++|++.
T Consensus       503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8888888888888888 67777888888888888888886

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-37  Score=313.83  Aligned_cols=371  Identities=21%  Similarity=0.220  Sum_probs=302.6

Q ss_pred             CCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEE
Q 003200          337 NGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR  416 (840)
Q Consensus       337 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~  416 (840)
                      +..+.|++++|.+...-+..|.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.+. ++....+..++.|+.||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD  155 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence            36677888888888877778888888888888888887 44654444555888888888886 66666788888888888


Q ss_pred             ccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccc
Q 003200          417 VGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH  496 (840)
Q Consensus       417 L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~  496 (840)
                      |+.|.|+......|....++++|++++|.++......|..+.+|..|.++.|+++.+.+..| +.+++|+.|++..|++.
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F-k~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF-KRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHh-hhcchhhhhhcccccee
Confidence            88888888777777777888888888888888888888888889999999999888877665 66778888877777765


Q ss_pred             cccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCcccc
Q 003200          497 GKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM  576 (840)
Q Consensus       497 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  576 (840)
                      ..                                                -...|.++++|+.|.+..|.+......+|.
T Consensus       235 iv------------------------------------------------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy  266 (873)
T KOG4194|consen  235 IV------------------------------------------------EGLTFQGLPSLQNLKLQRNDISKLDDGAFY  266 (873)
T ss_pred             ee------------------------------------------------hhhhhcCchhhhhhhhhhcCcccccCccee
Confidence            21                                                012345678889999999998877778899


Q ss_pred             CCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccE
Q 003200          577 SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLV  656 (840)
Q Consensus       577 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~  656 (840)
                      .+.++++|+|+.|++...-..++-++++|+.|+++.|.|..+.+.++..+++|++|+|++|+++..-+..|. .+..|++
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~  345 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR-VLSQLEE  345 (873)
T ss_pred             eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH-HHHHhhh
Confidence            999999999999999987778888999999999999999988889999999999999999999855555554 7899999


Q ss_pred             EEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCc
Q 003200          657 LILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEIL  736 (840)
Q Consensus       657 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  736 (840)
                      |+|++|++...-..+|..+++|++|||++|.+++.+.+.-.-...                +++|+.|++.+|++....-
T Consensus       346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g----------------l~~LrkL~l~gNqlk~I~k  409 (873)
T KOG4194|consen  346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG----------------LPSLRKLRLTGNQLKSIPK  409 (873)
T ss_pred             hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc----------------chhhhheeecCceeeecch
Confidence            999999999888888999999999999999998776653222211                3555899999999986666


Q ss_pred             ccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCC
Q 003200          737 SEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSV  776 (840)
Q Consensus       737 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  776 (840)
                      .+|..+.+|+.|||.+|.+..+.|++|..+ .|+.|-+..
T Consensus       410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  410 RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            789999999999999999998999999988 888886643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-36  Score=311.11  Aligned_cols=357  Identities=25%  Similarity=0.268  Sum_probs=231.2

Q ss_pred             cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCE
Q 003200          262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES  341 (840)
Q Consensus       262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~  341 (840)
                      +.|++++|.+....+..|.++++|+++++.. |.+ ..+|...+...+++.|+|.+|.++..-.+.+..++     .|++
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~L-t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-----alrs  153 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NEL-TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-----ALRS  153 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeecc-chh-hhcccccccccceeEEeeeccccccccHHHHHhHh-----hhhh
Confidence            4466666666666666666677777776665 333 35666555666788888888888877777777777     8899


Q ss_pred             EEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcc
Q 003200          342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ  421 (840)
Q Consensus       342 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  421 (840)
                      ||++.|.++...-..|..-.++++|+|++|.|+..-...|.++.+|..|.|++|+++ .+|...|.++++|+.|+|..|.
T Consensus       154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccc
Confidence            999999888876667777788999999999999888888999999999999999997 8888899999999999999999


Q ss_pred             cceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCccccccccc
Q 003200          422 LTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN  501 (840)
Q Consensus       422 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  501 (840)
                      |.......|.++++|+.|.+..|.+.......|..+.++++|+++.|+++..-..+++                      
T Consensus       233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf----------------------  290 (873)
T KOG4194|consen  233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF----------------------  290 (873)
T ss_pred             eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc----------------------
Confidence            8876666666666666666666666655555566666666666666555544333321                      


Q ss_pred             ccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCc
Q 003200          502 LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNL  581 (840)
Q Consensus       502 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  581 (840)
                                                                         ++++|+.|++|+|.|...-++.+.-+++|
T Consensus       291 ---------------------------------------------------gLt~L~~L~lS~NaI~rih~d~WsftqkL  319 (873)
T KOG4194|consen  291 ---------------------------------------------------GLTSLEQLDLSYNAIQRIHIDSWSFTQKL  319 (873)
T ss_pred             ---------------------------------------------------ccchhhhhccchhhhheeecchhhhcccc
Confidence                                                               23445555555555554445555555555


Q ss_pred             CEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCCh--hhhhccCCccEEEc
Q 003200          582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPT--WFGERFSRMLVLIL  659 (840)
Q Consensus       582 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~--~~~~~l~~L~~L~l  659 (840)
                      ++|+|++|+++...++.|..+..|++|+|++|++...-...|..+++|++|||++|.++..+.+  ..+.++++|+.|.+
T Consensus       320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL  399 (873)
T ss_pred             eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence            5555555555544445555555555555555555544444455555555555555555444332  12224555555555


Q ss_pred             cCCcccccCCccccCccccceeecccccccccCCcccccc
Q 003200          660 RSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNL  699 (840)
Q Consensus       660 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  699 (840)
                      .+|++..+...+|.++..|+.|||.+|.+....|.+|..+
T Consensus       400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             cCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            5555554444555555555555555555554445555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2e-38  Score=311.52  Aligned_cols=181  Identities=24%  Similarity=0.424  Sum_probs=150.8

Q ss_pred             CCCcccEEEccCCcCcCCCCcccccCCC---CcEEeCCCCcccccCChhhhhccCCccE-EEccCCcccccCCccccCcc
Q 003200          601 SITSLVWLYLRKNRLSGKIPISLKNCTA---LASLDVDENEFVGNIPTWFGERFSRMLV-LILRSNQFHGPLPKTICDLA  676 (840)
Q Consensus       601 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~ls~N~l~~~~p~~~~~~l~~L~~-L~l~~n~l~~~~p~~l~~l~  676 (840)
                      ...+.+.|++++-+++ .+|........   ....+++.|++. ++|..+. .+..+.+ +.+++|.++ .+|..++.++
T Consensus       360 ~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~lsnn~is-fv~~~l~~l~  435 (565)
T KOG0472|consen  360 AIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLVLSNNKIS-FVPLELSQLQ  435 (565)
T ss_pred             hhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHHhhcCccc-cchHHHHhhh
Confidence            3457888999998888 66665544333   788999999997 8898776 3455544 455555554 7888999999


Q ss_pred             ccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccc
Q 003200          677 FLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFT  756 (840)
Q Consensus       677 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  756 (840)
                      .|..|++++|.+. .+|..++.+..|                   +.||+|.|+|. .+|..+..+..|+.+-.++|++.
T Consensus       436 kLt~L~L~NN~Ln-~LP~e~~~lv~L-------------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~  494 (565)
T KOG0472|consen  436 KLTFLDLSNNLLN-DLPEEMGSLVRL-------------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG  494 (565)
T ss_pred             cceeeecccchhh-hcchhhhhhhhh-------------------heecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence            9999999999887 899988888777                   89999999998 78888888888888888889999


Q ss_pred             ccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCC
Q 003200          757 GRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPL  809 (840)
Q Consensus       757 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  809 (840)
                      ...|+.+.+|.+|.+|||.+|.+. .+|..+++|++|++|++++|++.  .|.
T Consensus       495 ~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  495 SVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR  544 (565)
T ss_pred             ccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence            766777999999999999999998 89999999999999999999998  454

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-36  Score=324.73  Aligned_cols=243  Identities=26%  Similarity=0.411  Sum_probs=151.2

Q ss_pred             CCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCccc
Q 003200          527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLV  606 (840)
Q Consensus       527 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  606 (840)
                      .+++++++++|++++.. .++    ..+.+|+.++..+|.++ .+|..+...++|+.|.+.+|.+. .+|.......+|+
T Consensus       241 ~nl~~~dis~n~l~~lp-~wi----~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~  313 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLP-EWI----GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLR  313 (1081)
T ss_pred             ccceeeecchhhhhcch-HHH----HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceee
Confidence            34555555555555432 333    33667777777777775 55666666677777777777776 4455566677777


Q ss_pred             EEEccCCcCcCCCCccc-ccCC-CCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecc
Q 003200          607 WLYLRKNRLSGKIPISL-KNCT-ALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLA  684 (840)
Q Consensus       607 ~L~L~~n~l~~~~p~~l-~~l~-~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls  684 (840)
                      +|+|..|++. ..|..+ .-.. +|+.|+.+.|++. ..|..-....+.|+.|.+.+|.++...-..+.+...|+.|+|+
T Consensus       314 tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs  391 (1081)
T KOG0618|consen  314 TLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS  391 (1081)
T ss_pred             eeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence            7777777776 444432 2222 2566666666665 4443333345566777777777776666666667777777777


Q ss_pred             cccccccCC-ccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcch
Q 003200          685 DNNLSGAIP-KCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI  763 (840)
Q Consensus       685 ~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l  763 (840)
                      +|++. .+| ..+.++..|                   +.|+||+|+++ .+|..+.++..|++|...+|++. ..| .+
T Consensus       392 yNrL~-~fpas~~~kle~L-------------------eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~  448 (1081)
T KOG0618|consen  392 YNRLN-SFPASKLRKLEEL-------------------EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL  448 (1081)
T ss_pred             ccccc-cCCHHHHhchHHh-------------------HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence            77776 333 344444444                   67777777776 56677777777777777777777 556 56


Q ss_pred             hccCCCCeEeCCCCccccc-CCccccCCCCCCeEeccCCc
Q 003200          764 GTMRALESVDFSVNQLSGE-IPQSMSSLTFLNHLNLSNNN  802 (840)
Q Consensus       764 ~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~  802 (840)
                      .++++|+.+|+|.|+++.. +|..... ++|++||+++|.
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            7777777777777777632 3333332 667777777775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-34  Score=313.61  Aligned_cols=356  Identities=24%  Similarity=0.266  Sum_probs=168.6

Q ss_pred             ccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCC
Q 003200          231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNL  310 (840)
Q Consensus       231 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L  310 (840)
                      ..++.+|+++.|.+|.+. ..|..+..+++|++|+++.|.+. .+|..+..++.++.+..++| .....++    ... +
T Consensus        87 ~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N-~~~~~lg----~~~-i  158 (1081)
T KOG0618|consen   87 CSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNN-EKIQRLG----QTS-I  158 (1081)
T ss_pred             hhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcc-hhhhhhc----ccc-c
Confidence            344444444444444433 34444444444444444444443 34444444444444444442 1111111    111 5


Q ss_pred             cEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEE
Q 003200          311 KSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL  390 (840)
Q Consensus       311 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  390 (840)
                      +.+++..+.+.+.++..++.+.     .  .|++.+|.+.   -..+..+.+|+.+....|++....    ..-++|+.|
T Consensus       159 k~~~l~~n~l~~~~~~~i~~l~-----~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L  224 (1081)
T KOG0618|consen  159 KKLDLRLNVLGGSFLIDIYNLT-----H--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTAL  224 (1081)
T ss_pred             hhhhhhhhhcccchhcchhhhh-----e--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchhee
Confidence            5555555555555555554332     2  4667776665   123456777888888888776431    123678888


Q ss_pred             EccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCC
Q 003200          391 QIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRI  470 (840)
Q Consensus       391 ~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i  470 (840)
                      +.+.|.++ ++..  -..-.+|+++++++|+++                         ..|.|+..+.+|+.+++.+|++
T Consensus       225 ~a~~n~l~-~~~~--~p~p~nl~~~dis~n~l~-------------------------~lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  225 YADHNPLT-TLDV--HPVPLNLQYLDISHNNLS-------------------------NLPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             eeccCcce-eecc--ccccccceeeecchhhhh-------------------------cchHHHHhcccceEecccchhH
Confidence            88888776 2211  111123344444444333                         2335555555555555555555


Q ss_pred             CCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhc
Q 003200          471 SDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYR  550 (840)
Q Consensus       471 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  550 (840)
                      +......+  ...+|+.+.+.+|.+.-..+...                                               
T Consensus       277 ~~lp~ri~--~~~~L~~l~~~~nel~yip~~le-----------------------------------------------  307 (1081)
T KOG0618|consen  277 VALPLRIS--RITSLVSLSAAYNELEYIPPFLE-----------------------------------------------  307 (1081)
T ss_pred             HhhHHHHh--hhhhHHHHHhhhhhhhhCCCccc-----------------------------------------------
Confidence            33322211  12333333333333332222211                                               


Q ss_pred             cCCCCcccEEeccCCcCccccCccccCCC-CcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCC
Q 003200          551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQ-NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTAL  629 (840)
Q Consensus       551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  629 (840)
                        ..++|++|+|..|++....+..+.... +|+.|+.+.|++....-..=...+.|+.|++.+|+++...-..+.+.++|
T Consensus       308 --~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL  385 (1081)
T KOG0618|consen  308 --GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL  385 (1081)
T ss_pred             --ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence              134444444444444422211122221 14444445555442211111123456666666666665555556666666


Q ss_pred             cEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccc
Q 003200          630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS  689 (840)
Q Consensus       630 ~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  689 (840)
                      +.|++++|++. .+|+.....+..|+.|+|++|+++ .+|..+..+..|++|...+|.+.
T Consensus       386 KVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  386 KVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             eeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence            66666666664 555555445555555555555554 33445555555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.1e-32  Score=284.84  Aligned_cols=202  Identities=26%  Similarity=0.366  Sum_probs=120.2

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCC-CCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFS-GNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL  632 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  632 (840)
                      +..|+.|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. .+|+++.++++|+.|
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL  250 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL  250 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence            345666666666554332233444556666666665433 245666666666777777777665 666666666777777


Q ss_pred             eCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccc-ccCCccccccccCcccccccCc
Q 003200          633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS-GAIPKCISNLTGMVTVKSFTGS  711 (840)
Q Consensus       633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~  711 (840)
                      ++|+|+++ .+..... ...+|++|+++.|+++ .+|.+++.++.|+.|++.+|+++ .-+|..|+.+..|         
T Consensus       251 NLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L---------  318 (1255)
T KOG0444|consen  251 NLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL---------  318 (1255)
T ss_pred             ccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh---------
Confidence            77777666 4443333 3456666666666666 55666666666666666666654 2345555555554         


Q ss_pred             ccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200          712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       712 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                                +.+..++|.+. ..|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|.-.
T Consensus       319 ----------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  319 ----------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ----------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence                      55555555554 55666666666666666666665 56666666666666666666544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3e-31  Score=274.18  Aligned_cols=182  Identities=20%  Similarity=0.334  Sum_probs=132.2

Q ss_pred             CCcccEEeccCCcCc-cccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200          554 TKSLEGLKLTDNYLQ-GEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL  632 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  632 (840)
                      +++|++|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. ..|+++-.+.+|+.|+|++|+|+ .+......-.+|++|
T Consensus       196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtL  273 (1255)
T KOG0444|consen  196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETL  273 (1255)
T ss_pred             chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhh
Confidence            466777777775433 356777777777888888888777 67777777778888888888776 444455555677778


Q ss_pred             eCCCCcccccCChhhhhccCCccEEEccCCcccc-cCCccccCccccceeecccccccccCCccccccccCcccccccCc
Q 003200          633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHG-PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGS  711 (840)
Q Consensus       633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~  711 (840)
                      ++|+|+++ .+|+.++ .+++|+.|.+.+|+++. -+|..++.+.+|+.+..++|++. .+|+.+..+..|         
T Consensus       274 NlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL---------  341 (1255)
T KOG0444|consen  274 NLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL---------  341 (1255)
T ss_pred             ccccchhc-cchHHHh-hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH---------
Confidence            88888877 7777777 67777777777777653 36777777777887777777776 777777777666         


Q ss_pred             ccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCC
Q 003200          712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIP  760 (840)
Q Consensus       712 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  760 (840)
                                +.|.|++|++. .+|+.+.-++.|+.||+..|.-..-.|
T Consensus       342 ----------~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  342 ----------QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ----------HHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence                      67777888776 677777777788888887776553333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=8e-26  Score=222.99  Aligned_cols=290  Identities=23%  Similarity=0.179  Sum_probs=156.7

Q ss_pred             CCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccC-cCCCCCcchhhhcCCCCCCCEE
Q 003200          132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS-VNLSKASDWLMATNTLPSLLEL  210 (840)
Q Consensus       132 ~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~l~~L~~L  210 (840)
                      .-..++|..|+|+.+.|.+|+.+++|+.||||+|.|+.+.+.+|.+++.|..|-+.+ |+|+.++.  ..|+.+..|+.|
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k--~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK--GAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh--hHhhhHHHHHHH
Confidence            344555666666655555666666666666666666666666666666555554433 55555432  122223333333


Q ss_pred             EcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEec
Q 003200          211 RLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL  290 (840)
Q Consensus       211 ~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  290 (840)
                      .+.-|.+..+..      +.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+..     ..+++.+...  
T Consensus       146 llNan~i~Cir~------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~--  212 (498)
T KOG4237|consen  146 LLNANHINCIRQ------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADD--  212 (498)
T ss_pred             hcChhhhcchhH------HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhH--
Confidence            333333332222      445555555555555555542222245555555555555554321     1111111111  


Q ss_pred             ccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCc-cccCCCCCCCEEEcc
Q 003200          291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLT-DQLGQFRNLVTLNLA  369 (840)
Q Consensus       291 ~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~  369 (840)
                            ....|..++.........+...++....+..+...    ...+.+-..+.+...+..| ..|..+++|++|+++
T Consensus       213 ------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~----~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls  282 (498)
T KOG4237|consen  213 ------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS----LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS  282 (498)
T ss_pred             ------HhhchhhcccceecchHHHHHHHhcccchhhhhhh----HHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence                  11122223333333333333333332222221110    0011111112222222233 367888889999999


Q ss_pred             CCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCC
Q 003200          370 NNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVG  447 (840)
Q Consensus       370 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~  447 (840)
                      +|+++++-+.+|.+..++++|.|..|++. .+....|.++..|+.|+|.+|+|+...+..|.+...|.+|.+-.|.+.
T Consensus       283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  283 NNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             CCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            99988888888888888899999888886 677778888888888888888888888777777777777777666543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=2.2e-25  Score=219.91  Aligned_cols=405  Identities=19%  Similarity=0.206  Sum_probs=228.7

Q ss_pred             CCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccC-CccccccChhhhccCCCCCEEE
Q 003200          338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD-NKLNGTLSEFHFANLTKLSWFR  416 (840)
Q Consensus       338 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~L~~L~  416 (840)
                      ....++|..|+|+...+.+|+.+++|+.|||++|.|+.+-|.+|.++++|..|.+.+ |+|+ .++...|.++.+|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            455666666666666666666666666666666666666666666666666665555 5554 56666666666666666


Q ss_pred             ccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCC------------cchHHHhccCC
Q 003200          417 VGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDI------------FPIRFLKSASQ  484 (840)
Q Consensus       417 L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~------------~~~~~~~~l~~  484 (840)
                      +.-|++.......+..++.+..|.+.+|.+....-..|..+..++.+.+..|.+...            .+..+ +....
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet-sgarc  225 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET-SGARC  225 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc-cccee
Confidence            666666666666666666666666666666555555666666666666666652211            00000 11111


Q ss_pred             ccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccC
Q 003200          485 LKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTD  564 (840)
Q Consensus       485 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~  564 (840)
                      ..-..+.+.++...-+.-+.. .++.+                  ..--.+.+...+..|.   ..+..+++|+.|++++
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c-~~esl------------------~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsn  283 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLC-SLESL------------------PSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSN  283 (498)
T ss_pred             cchHHHHHHHhcccchhhhhh-hHHhH------------------HHhhccccCcCCcChH---HHHhhcccceEeccCC
Confidence            111112222222111100000 00000                  0000111112222222   1256688899999999


Q ss_pred             CcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccC-
Q 003200          565 NYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNI-  643 (840)
Q Consensus       565 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~-  643 (840)
                      |+++++-+.+|.+...+++|.|..|++...-...|.++..|+.|+|++|+|+...|.+|..+.+|.+|++-.|.+...- 
T Consensus       284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR  363 (498)
T ss_pred             CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence            9999888888999999999999999988766677888889999999999999888888988889999998888765321 


Q ss_pred             ChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccc---cCCcc---------ccccccCcccccccCc
Q 003200          644 PTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG---AIPKC---------ISNLTGMVTVKSFTGS  711 (840)
Q Consensus       644 p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---~~p~~---------~~~l~~L~~l~~~~~~  711 (840)
                      -.|+++.+        +.+...|..|-  +....++.++++++.+..   ..|+.         -..++.+.        
T Consensus       364 l~wl~~Wl--------r~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~--------  425 (498)
T KOG4237|consen  364 LAWLGEWL--------RKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLD--------  425 (498)
T ss_pred             hHHHHHHH--------hhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhh--------
Confidence            23333221        11222222221  122335555555554331   12221         12222222        


Q ss_pred             ccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCC
Q 003200          712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT  791 (840)
Q Consensus       712 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  791 (840)
                                ++...|+..+. .+|..+.  ..-++|++.+|.++ .+|.+  .+.+| .+|+|+|+++..--..|++|+
T Consensus       426 ----------tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~t  488 (498)
T KOG4237|consen  426 ----------TVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMT  488 (498)
T ss_pred             ----------hhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchh
Confidence                      22333444333 4444332  13455667777777 56655  55666 777777777644445677777


Q ss_pred             CCCeEeccCC
Q 003200          792 FLNHLNLSNN  801 (840)
Q Consensus       792 ~L~~L~ls~N  801 (840)
                      .|.+|-+|||
T Consensus       489 ql~tlilsyn  498 (498)
T KOG4237|consen  489 QLSTLILSYN  498 (498)
T ss_pred             hhheeEEecC
Confidence            7777777765

>PLN03210 Resistant to P

Probab=99.88  E-value=3.1e-21  Score=236.17  Aligned_cols=198  Identities=20%  Similarity=0.237  Sum_probs=97.1

Q ss_pred             cChhhhccCCCCCEEEccCccc------ceeccCCCCC-ccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCC
Q 003200          401 LSEFHFANLTKLSWFRVGGNQL------TFEVKHDWIP-PFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDI  473 (840)
Q Consensus       401 i~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~  473 (840)
                      +....|.++++|+.|.+..+..      ....+..+.. +.+|+.|.+.++.+. ..|..+ ...+|++|++.+|++...
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccc
Confidence            3444567777777777654432      1122222222 234666666665543 334444 356777777777776654


Q ss_pred             cchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCC---CCCCcEEEccCCcCcccCCchhhhc
Q 003200          474 FPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV---SSNLVYLDFSNNSFSGSISHFLCYR  550 (840)
Q Consensus       474 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~  550 (840)
                      ...  ...+++|+.++++++.....+|.+...++|+.|++.+|.....+|..   +++|+.|++++|.....+|...   
T Consensus       627 ~~~--~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---  701 (1153)
T PLN03210        627 WDG--VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---  701 (1153)
T ss_pred             ccc--cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---
Confidence            332  13566677777776655555555555566666666655544444433   3444555555443333333211   


Q ss_pred             cCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccC
Q 003200          551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRK  612 (840)
Q Consensus       551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  612 (840)
                        .+++|+.|++++|...+.+|..   ..+|++|++++|.+. .+|..+ .+++|+.|++.+
T Consensus       702 --~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~  756 (1153)
T PLN03210        702 --NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE  756 (1153)
T ss_pred             --CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence              2344555555544433333321   234444555554443 233322 234444444443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=4.5e-21  Score=234.75  Aligned_cols=339  Identities=17%  Similarity=0.167  Sum_probs=225.6

Q ss_pred             CCCCCccCccEEecccccC------CCCCCccccCC-CCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccc
Q 003200          428 HDWIPPFQLVALGLHNCYV------GSRFPQWLHSQ-KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKIS  500 (840)
Q Consensus       428 ~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~l-~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  500 (840)
                      ..|..+.+|+.|.+..+..      ...+|..+..+ .+|+.|++.++.+...+.. |  .+.+|+.|++.+|++.....
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f--~~~~L~~L~L~~s~l~~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F--RPENLVKLQMQGSKLEKLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C--CccCCcEEECcCcccccccc
Confidence            3455667777777754422      22345555554 3577777777776555432 2  34677777777777765555


Q ss_pred             cccCCCcccEEEcccCcCCCCCCCC--CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCC
Q 003200          501 NLTKNTQLLFLSVNSNNMSGPLPLV--SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSY  578 (840)
Q Consensus       501 ~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  578 (840)
                      .....++|+.++++++...+.+|..  +++|+.|++++|.....+|..    +..+++|+.|++++|...+.+|..+ ++
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s----i~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS----IQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh----hhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            5556677777777776555555543  567777777777655555543    3446777777777765444566544 56


Q ss_pred             CCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccc------cCChhhhhccC
Q 003200          579 QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG------NIPTWFGERFS  652 (840)
Q Consensus       579 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~------~~p~~~~~~l~  652 (840)
                      ++|+.|++++|...+.+|..   ..+|++|++++|.+. .+|..+ .+++|+.|++.++....      .++.......+
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            77777777777655555532   346777777777765 455544 45667777776543210      11111111346


Q ss_pred             CccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccc
Q 003200          653 RMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFS  732 (840)
Q Consensus       653 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~  732 (840)
                      +|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++                   |+.|++++|...
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s-------------------L~~L~Ls~c~~L  838 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLES-------------------LESLDLSGCSRL  838 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cccc-------------------cCEEECCCCCcc
Confidence            78888888887777778888888888888888876555666654 3444                   489999998765


Q ss_pred             ccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcc
Q 003200          733 GEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL  803 (840)
Q Consensus       733 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  803 (840)
                      ..+|..   .++|+.|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..++.|+.+++++|.-
T Consensus       839 ~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        839 RTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             cccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            555543   367899999999998 7899999999999999999655557888889999999999998853

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1e-21  Score=221.89  Aligned_cols=154  Identities=22%  Similarity=0.307  Sum_probs=71.9

Q ss_pred             CCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCc
Q 003200          459 HLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNS  538 (840)
Q Consensus       459 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  538 (840)
                      .-..|+++++.++.+++ .+   .++++.|++++|+++..+ .  ..++|++|++++|+++. +|..+++|+.|++++|.
T Consensus       202 ~~~~LdLs~~~LtsLP~-~l---~~~L~~L~L~~N~Lt~LP-~--lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~  273 (788)
T PRK15387        202 GNAVLNVGESGLTTLPD-CL---PAHITTLVIPDNNLTSLP-A--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP  273 (788)
T ss_pred             CCcEEEcCCCCCCcCCc-ch---hcCCCEEEccCCcCCCCC-C--CCCCCcEEEecCCccCc-ccCcccccceeeccCCc
Confidence            35567777777775433 22   135667777777666432 1  12455555555555553 23344455555555555


Q ss_pred             CcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCC
Q 003200          539 FSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK  618 (840)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  618 (840)
                      +..... .       .++|+.|++++|+++. +|..   .++|++|++++|++++ +|..   ..+|+.|++++|++++ 
T Consensus       274 L~~Lp~-l-------p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        274 LTHLPA-L-------PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             hhhhhh-c-------hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence            443211 0       1344455555555542 2221   2345555555555543 2221   1234444555555442 


Q ss_pred             CCcccccCCCCcEEeCCCCccc
Q 003200          619 IPISLKNCTALASLDVDENEFV  640 (840)
Q Consensus       619 ~p~~l~~l~~L~~L~ls~N~l~  640 (840)
                      +|..   ..+|+.|++++|+++
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLA  355 (788)
T ss_pred             cccc---ccccceEecCCCccC
Confidence            3321   124444555555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.6e-21  Score=220.25  Aligned_cols=262  Identities=24%  Similarity=0.284  Sum_probs=148.0

Q ss_pred             CccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEecc
Q 003200          484 QLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLT  563 (840)
Q Consensus       484 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls  563 (840)
                      .-..|+++.+.++..++.+.  .+++.|++.+|+++. +|..+++|++|++++|+++.. |..       .++|+.|+++
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsL-P~l-------p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSL-PVL-------PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcc-cCc-------ccccceeecc
Confidence            34566666666664333232  356666666666664 444556666666666666643 221       2456666666


Q ss_pred             CCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccC
Q 003200          564 DNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNI  643 (840)
Q Consensus       564 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  643 (840)
                      +|.++ .+|..   ..+|+.|++++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|.++ .+
T Consensus       271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L  337 (788)
T PRK15387        271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL  337 (788)
T ss_pred             CCchh-hhhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence            66665 23332   2456666666666663 3331   3556666666666663 3332   134566666666665 34


Q ss_pred             ChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceE
Q 003200          644 PTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSL  723 (840)
Q Consensus       644 p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~  723 (840)
                      |..    ..+|+.|++++|++++ +|..   ..+|+.|++++|.+. .+|...   .                   .|+.
T Consensus       338 P~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~-------------------~L~~  386 (788)
T PRK15387        338 PTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---S-------------------GLKE  386 (788)
T ss_pred             ccc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc---c-------------------ccce
Confidence            431    2456666666666664 3332   245666666666666 344322   1                   2256


Q ss_pred             EeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcc
Q 003200          724 LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL  803 (840)
Q Consensus       724 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  803 (840)
                      |++++|++++ +|..   .++|+.|++++|+++ .+|...   .+|+.|++++|+++ .+|..+.++++|+.|++++|+|
T Consensus       387 LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        387 LIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             EEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence            6666666663 4432   245666666666666 355432   34566666666666 5666666666666677777766


Q ss_pred             cccCCC
Q 003200          804 TGKIPL  809 (840)
Q Consensus       804 ~g~ip~  809 (840)
                      +|.+|.
T Consensus       458 s~~~~~  463 (788)
T PRK15387        458 SERTLQ  463 (788)
T ss_pred             CchHHH
Confidence            666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1.3e-19  Score=206.49  Aligned_cols=204  Identities=26%  Similarity=0.429  Sum_probs=88.8

Q ss_pred             cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200          556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD  635 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls  635 (840)
                      +|+.|++++|+++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence            4444444444444 2233221  23444555555444 3333332  24455555555444 2333332  245555555


Q ss_pred             CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200          636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR  715 (840)
Q Consensus       636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  715 (840)
                      +|+++ .+|..+.   ++|+.|++++|+++. +|..+  .++|+.|++++|.++ .+|..+.                  
T Consensus       292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~------------------  345 (754)
T PRK15370        292 DNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP------------------  345 (754)
T ss_pred             CCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc------------------
Confidence            55544 2333221   234445555555543 22222  134555555555554 2333221                  


Q ss_pred             ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcccc----CCC
Q 003200          716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS----SLT  791 (840)
Q Consensus       716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~  791 (840)
                         ++|+.|++++|+++ .+|..+.  +.|+.|++++|+++ .+|..+.  .+|+.|++++|+++ .+|..+.    .++
T Consensus       346 ---~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~  415 (754)
T PRK15370        346 ---PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGP  415 (754)
T ss_pred             ---CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCC
Confidence               12255555555554 2343332  34555555555555 3444333  24555555555554 3343322    224


Q ss_pred             CCCeEeccCCccc
Q 003200          792 FLNHLNLSNNNLT  804 (840)
Q Consensus       792 ~L~~L~ls~N~l~  804 (840)
                      .+..+++.+|+++
T Consensus       416 ~l~~L~L~~Npls  428 (754)
T PRK15370        416 QPTRIIVEYNPFS  428 (754)
T ss_pred             CccEEEeeCCCcc
Confidence            4555555555553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.1e-19  Score=207.21  Aligned_cols=246  Identities=24%  Similarity=0.376  Sum_probs=144.0

Q ss_pred             CCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCc
Q 003200          459 HLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNS  538 (840)
Q Consensus       459 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  538 (840)
                      +...|++++++++.++.. +   .+.++.|++++|+++.....                       .+++|++|++++|+
T Consensus       179 ~~~~L~L~~~~LtsLP~~-I---p~~L~~L~Ls~N~LtsLP~~-----------------------l~~nL~~L~Ls~N~  231 (754)
T PRK15370        179 NKTELRLKILGLTTIPAC-I---PEQITTLILDNNELKSLPEN-----------------------LQGNIKTLYANSNQ  231 (754)
T ss_pred             CceEEEeCCCCcCcCCcc-c---ccCCcEEEecCCCCCcCChh-----------------------hccCCCEEECCCCc
Confidence            456677777766654321 1   24566666666666543222                       23445555555555


Q ss_pred             CcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCC
Q 003200          539 FSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK  618 (840)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  618 (840)
                      ++.. |..+      ..+|+.|++++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .
T Consensus       232 LtsL-P~~l------~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~  297 (754)
T PRK15370        232 LTSI-PATL------PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-T  297 (754)
T ss_pred             cccC-Chhh------hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-c
Confidence            5432 2211      135666666666666 4454442  35667777777666 3454443  46777777777666 3


Q ss_pred             CCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccc
Q 003200          619 IPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISN  698 (840)
Q Consensus       619 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  698 (840)
                      +|..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+. 
T Consensus       298 LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-  366 (754)
T PRK15370        298 LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-  366 (754)
T ss_pred             Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence            444332  35667777777776 355443   2567777777777764 454442  56777777777776 4554332 


Q ss_pred             cccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchh----ccCCCCeEeC
Q 003200          699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG----TMRALESVDF  774 (840)
Q Consensus       699 l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~~L~~L~L  774 (840)
                                          +.|+.|++++|+++ .+|..+.  ..|+.|++++|+++ .+|..+.    .++.+..|++
T Consensus       367 --------------------~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L  422 (754)
T PRK15370        367 --------------------PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIV  422 (754)
T ss_pred             --------------------CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEe
Confidence                                23377777777777 4555554  35777778888777 5555443    3467777888


Q ss_pred             CCCccc
Q 003200          775 SVNQLS  780 (840)
Q Consensus       775 s~N~l~  780 (840)
                      .+|+++
T Consensus       423 ~~Npls  428 (754)
T PRK15370        423 EYNPFS  428 (754)
T ss_pred             eCCCcc
Confidence            888776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2e-19  Score=191.93  Aligned_cols=257  Identities=21%  Similarity=0.234  Sum_probs=142.9

Q ss_pred             CCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCcc------ccCccccCCCCcCEEEccCCcCCCCCCcccC
Q 003200          527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG------EIPDCWMSYQNLKVLKLSNNKFSGNLPNSLG  600 (840)
Q Consensus       527 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~  600 (840)
                      ..++.++++++.++......++..+...+.++.++++++.+.+      .++..+..+++|++|++++|.+.+..+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            3466666666665543333344444455667777777766552      2233455566777777777777654444444


Q ss_pred             CCCc---ccEEEccCCcCcC----CCCcccccC-CCCcEEeCCCCcccccCC----hhhhhccCCccEEEccCCccccc-
Q 003200          601 SITS---LVWLYLRKNRLSG----KIPISLKNC-TALASLDVDENEFVGNIP----TWFGERFSRMLVLILRSNQFHGP-  667 (840)
Q Consensus       601 ~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~ls~N~l~~~~p----~~~~~~l~~L~~L~l~~n~l~~~-  667 (840)
                      .+..   |+.|++++|++++    .+...+..+ ++|+.|++++|.+++...    ..+. .+++|++|++++|.+++. 
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR-ANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH-hCCCcCEEECcCCCCchHH
Confidence            4443   7777777777652    222334455 677777777777664322    2222 345677777777766632 


Q ss_pred             ---CCccccCccccceeecccccccccCCc----cccccccCcccccccCcccccccCCcceEEeCCCCcccccCccccc
Q 003200          668 ---LPKTICDLAFLQILDLADNNLSGAIPK----CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVT  740 (840)
Q Consensus       668 ---~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~  740 (840)
                         ++..+..+++|+.|++++|.+.+....    .+..+                   ++|+.|++++|.+++..+..+.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-------------------~~L~~L~ls~n~l~~~~~~~l~  242 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-------------------KSLEVLNLGDNNLTDAGAAALA  242 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc-------------------CCCCEEecCCCcCchHHHHHHH
Confidence               223344455677777777766532221    22222                   3346777777776643333222


Q ss_pred             -----CCCCCCeEeCCCCccc----ccCCcchhccCCCCeEeCCCCccccc----CCccccCC-CCCCeEeccCCcc
Q 003200          741 -----NLKALQSINFSFNTFT----GRIPESIGTMRALESVDFSVNQLSGE----IPQSMSSL-TFLNHLNLSNNNL  803 (840)
Q Consensus       741 -----~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l  803 (840)
                           ..+.|+.|++++|.++    ..++..+..+++|+++|+++|+++..    +...+... +.|+++++.+|++
T Consensus       243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence                 1356777777777765    22334455566777777777777643    33333334 5677777766653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=2.1e-18  Score=184.08  Aligned_cols=215  Identities=25%  Similarity=0.295  Sum_probs=138.0

Q ss_pred             cCCCCcccEEeccCCcCccccCccccCCCC---cCEEEccCCcCCC----CCCcccCCC-CcccEEEccCCcCcCC----
Q 003200          551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQN---LKVLKLSNNKFSG----NLPNSLGSI-TSLVWLYLRKNRLSGK----  618 (840)
Q Consensus       551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----  618 (840)
                      +..+++|+.|++++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.    
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            334566777777777666444444444433   7777777777663    122234445 6777777777777632    


Q ss_pred             CCcccccCCCCcEEeCCCCcccccCChhhhh---ccCCccEEEccCCccccc----CCccccCccccceeeccccccccc
Q 003200          619 IPISLKNCTALASLDVDENEFVGNIPTWFGE---RFSRMLVLILRSNQFHGP----LPKTICDLAFLQILDLADNNLSGA  691 (840)
Q Consensus       619 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~---~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~  691 (840)
                      ++..+..+++|++|++++|.+.+.....+..   ..++|+.|++++|.+++.    ++..+..+++|+.|++++|++++.
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            3334566677888888888777432222221   345788888888877643    234556778899999999988753


Q ss_pred             CCccccccccCcccccccCcccccccCCcceEEeCCCCccc----ccCcccccCCCCCCeEeCCCCccccc----CCcch
Q 003200          692 IPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFS----GEILSEVTNLKALQSINFSFNTFTGR----IPESI  763 (840)
Q Consensus       692 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~----~~~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l  763 (840)
                      ....+...  +            ....+.|+.|++++|.++    ..+...+..+++|+.+++++|.++..    ....+
T Consensus       237 ~~~~l~~~--~------------~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~  302 (319)
T cd00116         237 GAAALASA--L------------LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL  302 (319)
T ss_pred             HHHHHHHH--H------------hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence            33222211  0            001245599999999987    23445667778999999999999955    44555


Q ss_pred             hcc-CCCCeEeCCCCcc
Q 003200          764 GTM-RALESVDFSVNQL  779 (840)
Q Consensus       764 ~~l-~~L~~L~Ls~N~l  779 (840)
                      ... +.|++||+.+|++
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         303 LEPGNELESLWVKDDSF  319 (319)
T ss_pred             hhcCCchhhcccCCCCC
Confidence            555 7899999999874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=4.8e-19  Score=155.02  Aligned_cols=182  Identities=25%  Similarity=0.433  Sum_probs=107.5

Q ss_pred             CCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccE
Q 003200          577 SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLV  656 (840)
Q Consensus       577 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~  656 (840)
                      +++..+.|.+|+|+++ .+|..++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. .+|            
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lp------------   95 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILP------------   95 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCc------------
Confidence            4455566666666666 44445666666666666666665 55556666666666666555554 444            


Q ss_pred             EEccCCcccccCCccccCccccceeecccccccc-cCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccC
Q 003200          657 LILRSNQFHGPLPKTICDLAFLQILDLADNNLSG-AIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI  735 (840)
Q Consensus       657 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  735 (840)
                                   ..|+.++.|+.||+.+|++.. .+|..|..++.|                   +.|+|+.|.+. .+
T Consensus        96 -------------rgfgs~p~levldltynnl~e~~lpgnff~m~tl-------------------ralyl~dndfe-~l  142 (264)
T KOG0617|consen   96 -------------RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL-------------------RALYLGDNDFE-IL  142 (264)
T ss_pred             -------------cccCCCchhhhhhccccccccccCCcchhHHHHH-------------------HHHHhcCCCcc-cC
Confidence                         444555555555555555442 334444444444                   45555566555 56


Q ss_pred             cccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCC---CCCeEeccCCcccccCC
Q 003200          736 LSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT---FLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       736 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ls~N~l~g~ip  808 (840)
                      |.+++++++||.|.+..|.+. ++|..++.++.|++|.+.+|+++ .+|..++.+.   +=+.+.+.+|+...+|-
T Consensus       143 p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  143 PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            666677777777777777766 66777777777777777777776 5666655543   22445566777665553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=8.7e-19  Score=153.42  Aligned_cols=185  Identities=26%  Similarity=0.437  Sum_probs=146.3

Q ss_pred             CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200          553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL  632 (840)
Q Consensus       553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  632 (840)
                      .+..++.|.+|+|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4678889999999999 77788999999999999999999 67889999999999999999997 899999999999999


Q ss_pred             eCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcc
Q 003200          633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV  712 (840)
Q Consensus       633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  712 (840)
                      |+.+|.+...                        ..|..|..++.|+.|++++|.+. .+|..++++++|          
T Consensus       108 dltynnl~e~------------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l----------  152 (264)
T KOG0617|consen  108 DLTYNNLNEN------------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL----------  152 (264)
T ss_pred             hccccccccc------------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce----------
Confidence            9999987621                        34455556677777777777776 777777777766          


Q ss_pred             cccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccC---CCCeEeCCCCcccccCCcc
Q 003200          713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMR---ALESVDFSVNQLSGEIPQS  786 (840)
Q Consensus       713 ~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~Ls~N~l~~~~p~~  786 (840)
                               +.|.+..|.+- +.|.+++.++.|++|++.+|+++ .+|..++++.   +=+.+.+.+|.....|.+.
T Consensus       153 ---------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ  218 (264)
T KOG0617|consen  153 ---------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQ  218 (264)
T ss_pred             ---------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence                     67777777776 67888888888888888888888 6666666653   2234556677765555444

>PLN03150 hypothetical protein; Provisional

Probab=99.51  E-value=7.3e-14  Score=159.61  Aligned_cols=149  Identities=32%  Similarity=0.491  Sum_probs=120.4

Q ss_pred             CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc----cccceecCC--CCC--CEEEEEcCCCCCCCCCcccccccccc
Q 003200           30 GCLETERRALLRFKQDLQDPSNRLASWTGDGDCC----TWAGVACGN--VTG--HILELNLRNPSTSNPRSMLVGKVNPA  101 (840)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~--~~~--~v~~L~L~~~~~~~~~~~~~~~~~~~  101 (840)
                      .+.++|..||+++|+++.++..  .+|. +..||    .|.||.|..  ..+  +|+.|+|+++       .+.|.+|+.
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-------~L~g~ip~~  437 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-------GLRGFIPND  437 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCC-------CccccCCHH
Confidence            4567899999999999876542  4896 43443    799999952  222  5899999997       888999999


Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCC-CC
Q 003200          102 LLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGL-SF  180 (840)
Q Consensus       102 ~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~  180 (840)
                      +.++++|++|+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|++++|.+....+..+... .+
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~  516 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH  516 (623)
T ss_pred             HhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence            99999999999999999985 89999999999999999999999999999999999999999998876665555432 34


Q ss_pred             CCEEEccCc
Q 003200          181 LEHLDLRSV  189 (840)
Q Consensus       181 L~~L~Ls~n  189 (840)
                      +..+++.+|
T Consensus       517 ~~~l~~~~N  525 (623)
T PLN03150        517 RASFNFTDN  525 (623)
T ss_pred             CceEEecCC
Confidence            445555544

>PLN03150 hypothetical protein; Provisional

Probab=99.38  E-value=6e-13  Score=152.16  Aligned_cols=116  Identities=37%  Similarity=0.656  Sum_probs=104.6

Q ss_pred             ceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccC
Q 003200          721 VSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN  800 (840)
Q Consensus       721 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  800 (840)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|++.|.+|..++.+++|+.|||++|+++|.+|+.+.++++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCC--CcCCCcCcCCCCCC-CCCCCCCCCCCC
Q 003200          801 NNLTGKIPLS--TQLQSFNASSFAGN-DLCGAPLPKNCT  836 (840)
Q Consensus       801 N~l~g~ip~~--~~~~~~~~~~~~gn-~lcg~~~~~~c~  836 (840)
                      |+++|.+|..  ..+.......+.|| ++||.|-...|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999975  22223345678999 999987656784

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=3.9e-14  Score=147.39  Aligned_cols=213  Identities=27%  Similarity=0.422  Sum_probs=173.4

Q ss_pred             EEeccCCcCccccCcc-c-cCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCC
Q 003200          559 GLKLTDNYLQGEIPDC-W-MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDE  636 (840)
Q Consensus       559 ~L~Ls~n~l~~~~~~~-~-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~  636 (840)
                      .|.|++-++. ..|.. . ..+.--...|++.|++. ++|..++.+..|+.+.++.|.+. .+|.++.++..|.++|++.
T Consensus        54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence            3455555554 22221 1 23444567899999999 78888888999999999999998 8899999999999999999


Q ss_pred             CcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccc
Q 003200          637 NEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE  716 (840)
Q Consensus       637 N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~  716 (840)
                      |+++ .+|..++  .--|+.|.+++|+++ .+|..++....|..||.+.|.+. .+|..++++.++              
T Consensus       131 NqlS-~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl--------------  191 (722)
T KOG0532|consen  131 NQLS-HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL--------------  191 (722)
T ss_pred             chhh-cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH--------------
Confidence            9998 8888887  345999999999998 67888888899999999999998 888888888887              


Q ss_pred             cCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcccc---CCCCC
Q 003200          717 ILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS---SLTFL  793 (840)
Q Consensus       717 ~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L  793 (840)
                           +.|.+..|++. ..|+++..| .|..||+|.|+++ .||-.|.+|+.|++|-|.+|.+. +.|..+.   ...--
T Consensus       192 -----r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIF  262 (722)
T KOG0532|consen  192 -----RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIF  262 (722)
T ss_pred             -----HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeee
Confidence                 78889999988 667777755 5888999999999 89999999999999999999998 6676654   33445


Q ss_pred             CeEeccCCc
Q 003200          794 NHLNLSNNN  802 (840)
Q Consensus       794 ~~L~ls~N~  802 (840)
                      ++|+..-++
T Consensus       263 KyL~~qA~q  271 (722)
T KOG0532|consen  263 KYLSTQACQ  271 (722)
T ss_pred             eeecchhcc
Confidence            777877775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.31  E-value=7.5e-14  Score=145.33  Aligned_cols=195  Identities=23%  Similarity=0.358  Sum_probs=170.1

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      +..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|++|+|+.|+++ .+|..++.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344567889999998 78888888999999999999998 78889999999999999999998 8888898887 99999


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      +++|+++ .+|..++ ....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..++ |           
T Consensus       150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-L-----------  213 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-L-----------  213 (722)
T ss_pred             EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-e-----------
Confidence            9999998 8999998 8899999999999998 67888999999999999999998 7777776543 3           


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchh---ccCCCCeEeCCCCc
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG---TMRALESVDFSVNQ  778 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~  778 (840)
                              ..||+|+|+++ .||-.|.+|+.|++|-|.+|.++ ..|..+.   ...--++|+..-++
T Consensus       214 --------i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  214 --------IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             --------eeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence                    78999999999 89999999999999999999999 7777663   34456778887775

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=4.6e-12  Score=138.99  Aligned_cols=200  Identities=30%  Similarity=0.485  Sum_probs=133.5

Q ss_pred             cEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCC-cccEEEccCCcCcCCCCcccccCCCCcEEeCCC
Q 003200          558 EGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSIT-SLVWLYLRKNRLSGKIPISLKNCTALASLDVDE  636 (840)
Q Consensus       558 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~  636 (840)
                      ..++++.+.+...+ ..+..++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus        96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            35777777764332 23445577888888888888 4444455553 7888888888887 5566777888888888888


Q ss_pred             CcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccc
Q 003200          637 NEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE  716 (840)
Q Consensus       637 N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~  716 (840)
                      |+++ .+|.... ..+.|+.|++++|++. .+|..+.....|++|++++|++. ..+..+.+++.+              
T Consensus       173 N~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l--------------  234 (394)
T COG4886         173 NDLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL--------------  234 (394)
T ss_pred             chhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc--------------
Confidence            8887 5565543 4677777778877777 44444444556777777777544 445555555555              


Q ss_pred             cCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcc
Q 003200          717 ILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQS  786 (840)
Q Consensus       717 ~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  786 (840)
                           ..+.+++|++. .++..++.++.++.|++++|.++ .++. ++.+.+++.||+++|.++..+|..
T Consensus       235 -----~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         235 -----SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             -----cccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence                 55667777765 33556667777777777777777 4444 677777777777777777554443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.25  E-value=8.5e-12  Score=136.88  Aligned_cols=200  Identities=32%  Similarity=0.457  Sum_probs=134.6

Q ss_pred             EEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCC-CcCEEEccCCcCCCCCCcccCCCCcccEEE
Q 003200          531 YLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQ-NLKVLKLSNNKFSGNLPNSLGSITSLVWLY  609 (840)
Q Consensus       531 ~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  609 (840)
                      .++...+.+...+...     ...+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|+
T Consensus        97 ~l~~~~~~~~~~~~~~-----~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~  169 (394)
T COG4886          97 SLDLNLNRLRSNISEL-----LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD  169 (394)
T ss_pred             eeeccccccccCchhh-----hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccc
Confidence            4666666653333222     22366788888888877 4445555553 7888888888877 4445577778888888


Q ss_pred             ccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccc
Q 003200          610 LRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS  689 (840)
Q Consensus       610 L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  689 (840)
                      +++|+++ .+|......+.|+.|++++|++. .+|.... ....|+++.+++|.+. ..+..+..+..+..+.+++|++.
T Consensus       170 l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             cCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence            8888887 55655556778888888888887 6666543 3455888888888533 34556677777777777777776


Q ss_pred             ccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcch
Q 003200          690 GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI  763 (840)
Q Consensus       690 ~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l  763 (840)
                       ..+..++.+.++                   +.|++++|.++. ++. ++.+..++.|++++|.+....|...
T Consensus       246 -~~~~~~~~l~~l-------------------~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         246 -DLPESIGNLSNL-------------------ETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             -eccchhcccccc-------------------ceeccccccccc-ccc-ccccCccCEEeccCccccccchhhh
Confidence             335555555544                   778888888873 333 7777888888888888876555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=1.1e-12  Score=129.34  Aligned_cols=170  Identities=28%  Similarity=0.321  Sum_probs=75.0

Q ss_pred             ccccCCCCCCEEeCCCCCCCCC---CccccccCCCCCcEEeccCCc---ccCCCCC-------CCCCCCCCCeEeccCcc
Q 003200          100 PALLDLKHLSYLDLSSNDFQGV---QIPRFIGSMRNLRYLNLSDTQ---FVGMIPP-------QLGNLSDLQFLDLSSNY  166 (840)
Q Consensus       100 ~~~~~l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~---i~~~~p~-------~l~~l~~L~~L~Ls~n~  166 (840)
                      +.+.....+++++||+|.|...   .+...+.+.++|+..++|+--   ....+|.       ++..+++|++||||+|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            4445555666666666655321   122334445566666655421   1112222       33444566666666665


Q ss_pred             ccCCCccc----ccCCCCCCEEEccCcCCCCCcc-----------hhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcc
Q 003200          167 LYVDNVWW----LSGLSFLEHLDLRSVNLSKASD-----------WLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGL  231 (840)
Q Consensus       167 ~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l  231 (840)
                      +....++.    +.++..|++|.|.+|.+.....           .....+.-++|+++...+|.+...+..  .+...|
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~--~~A~~~  181 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT--ALAEAF  181 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH--HHHHHH
Confidence            55444432    2344555555555554432211           111223344555555555554443321  111334


Q ss_pred             cCCCCCCEEECcCCCCCCC----CcccccCCCCCcEEEcccCcc
Q 003200          232 QNLTSLKHLDLDSNHFNSS----IPDWLYKFSPLECLNLRNNSL  271 (840)
Q Consensus       232 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l  271 (840)
                      ..++.|+.+.++.|.|...    +...+..+++|++||+.+|.+
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf  225 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF  225 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence            4445555555555544311    112233444444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=6.4e-12  Score=127.31  Aligned_cols=224  Identities=21%  Similarity=0.188  Sum_probs=129.9

Q ss_pred             CCcCcccCCchhhhccCCCCcccEEeccCCcCccccC-ccccCCCCcCEEEccCCcCCCCC--CcccCCCCcccEEEccC
Q 003200          536 NNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGNL--PNSLGSITSLVWLYLRK  612 (840)
Q Consensus       536 ~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~L~~  612 (840)
                      +-.+.+..-..+...-.++.+|+++.|.++.+..... +....|++++.|||+.|-+....  -.....+++|+.|+++.
T Consensus       102 nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~  181 (505)
T KOG3207|consen  102 NKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS  181 (505)
T ss_pred             CceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc
Confidence            3333333333344444556677777777776652211 34566778888888887766421  12235677788888888


Q ss_pred             CcCcCCCCcc-cccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccccc
Q 003200          613 NRLSGKIPIS-LKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGA  691 (840)
Q Consensus       613 n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  691 (840)
                      |++....... -..++.|+.|.++.|.++-.--.++...+|+|+.|++..|.....-.....-+..|++|||++|++. .
T Consensus       182 Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~  260 (505)
T KOG3207|consen  182 NRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-D  260 (505)
T ss_pred             ccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-c
Confidence            8775322211 1245677788888887775555566667788888888777533333333344667778888887776 2


Q ss_pred             CC--ccccccccCcccccccCcccccccCCcceEEeCCCCcccccC-ccc-----ccCCCCCCeEeCCCCcccccCC--c
Q 003200          692 IP--KCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI-LSE-----VTNLKALQSINFSFNTFTGRIP--E  761 (840)
Q Consensus       692 ~p--~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-~~~-----l~~l~~L~~L~Ls~N~l~~~~p--~  761 (840)
                      .+  ...+.++                   .|..|+++.+.+++.- |+.     ...+++|+.|+++.|++. .++  .
T Consensus       261 ~~~~~~~~~l~-------------------~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~  320 (505)
T KOG3207|consen  261 FDQGYKVGTLP-------------------GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLN  320 (505)
T ss_pred             ccccccccccc-------------------chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccc
Confidence            22  2233333                   3366677777665322 221     245667777777777764 232  2


Q ss_pred             chhccCCCCeEeCCCCccc
Q 003200          762 SIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       762 ~l~~l~~L~~L~Ls~N~l~  780 (840)
                      .+..+.+|+.|.+-.|.++
T Consensus       321 ~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  321 HLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhccchhhhhhccccccc
Confidence            3444556666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=2.3e-11  Score=116.85  Aligned_cols=131  Identities=23%  Similarity=0.348  Sum_probs=84.3

Q ss_pred             CCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcc
Q 003200          652 SRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNF  731 (840)
Q Consensus       652 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l  731 (840)
                      ..|+++++++|.|+ .+.+++.-.+.++.|++|+|.+.     .++++..|                ++|+.||||+|.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-----~v~nLa~L----------------~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-----TVQNLAEL----------------PQLQLLDLSGNLL  341 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-----eehhhhhc----------------ccceEeecccchh
Confidence            34667777777766 34455566677777777777776     22222222                4447777777777


Q ss_pred             cccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccC-CccccCCCCCCeEeccCCcccccC
Q 003200          732 SGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEI-PQSMSSLTFLNHLNLSNNNLTGKI  807 (840)
Q Consensus       732 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~i  807 (840)
                      + .+...-..+-+.+.|+|+.|.+.. + ..++.+-+|..||+++|++...- -..+++++.|+.+.+.+|++.+.+
T Consensus       342 s-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  342 A-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             H-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            6 333333456667777888887762 2 34677778888888888876432 235777888888888888887643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=2e-11  Score=113.54  Aligned_cols=112  Identities=26%  Similarity=0.319  Sum_probs=34.0

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCcccccc-CCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCC
Q 003200          102 LLDLKHLSYLDLSSNDFQGVQIPRFIG-SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSF  180 (840)
Q Consensus       102 ~~~l~~L~~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  180 (840)
                      +.+...+++|+|++|.|+.+   +.++ .+.+|+.|++++|.|+..  +.+..+++|++|++++|.++.........+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCc
Confidence            33445678888888887743   2344 467788888888887743  24677777888888888777654332345677


Q ss_pred             CCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCc
Q 003200          181 LEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH  219 (840)
Q Consensus       181 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  219 (840)
                      |++|++++|++..+.+ ...+..+++|+.|++.+|.+..
T Consensus        90 L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   90 LQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             --EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccc
Confidence            7777777777766544 2334455555555555555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=2.1e-11  Score=117.23  Aligned_cols=137  Identities=25%  Similarity=0.314  Sum_probs=106.4

Q ss_pred             ccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcccccccc
Q 003200          622 SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG  701 (840)
Q Consensus       622 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  701 (840)
                      .....+.|+++|+|+|.|+ .+.+.+- -.|.++.|++++|.+....  .++.+++|+.||||+|.++ .+..+-..   
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K---  350 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLK---  350 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhh---
Confidence            3344467888999999887 6666655 5789999999999987543  3788999999999999987 33333223   


Q ss_pred             CcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccC-CcchhccCCCCeEeCCCCccc
Q 003200          702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRI-PESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       702 L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                                      +.+++.|.|++|.+..  ...++.+-+|..||+++|++...- -..+|+++.|+.+.|.+|++.
T Consensus       351 ----------------LGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  351 ----------------LGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             ----------------hcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence                            3445899999999863  457888999999999999998432 357899999999999999998


Q ss_pred             ccCCc
Q 003200          781 GEIPQ  785 (840)
Q Consensus       781 ~~~p~  785 (840)
                      + +|+
T Consensus       413 ~-~vd  416 (490)
T KOG1259|consen  413 G-SVD  416 (490)
T ss_pred             c-cch
Confidence            4 443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=1.9e-11  Score=120.71  Aligned_cols=235  Identities=22%  Similarity=0.262  Sum_probs=139.1

Q ss_pred             CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCC---cCccccCc-------cccCCCCcCEEEccCCcCCCCC
Q 003200          526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDN---YLQGEIPD-------CWMSYQNLKVLKLSNNKFSGNL  595 (840)
Q Consensus       526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n---~l~~~~~~-------~~~~l~~L~~L~Ls~n~l~~~~  595 (840)
                      ...++.+++++|.|...-...++..+...+.|+..++++-   +....+|+       ++..++.|++||||+|.+.-..
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            3567888888888887777778888888888888888763   22223443       3456778999999999887655


Q ss_pred             Cccc----CCCCcccEEEccCCcCcCCCCcc-------------cccCCCCcEEeCCCCcccccCCh---hhhhccCCcc
Q 003200          596 PNSL----GSITSLVWLYLRKNRLSGKIPIS-------------LKNCTALASLDVDENEFVGNIPT---WFGERFSRML  655 (840)
Q Consensus       596 ~~~l----~~l~~L~~L~L~~n~l~~~~p~~-------------l~~l~~L~~L~ls~N~l~~~~p~---~~~~~l~~L~  655 (840)
                      ++.|    ..+..|+.|+|.+|.+.-.--..             ...-+.|+++..++|++...--.   ..++..+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            5443    55788999999998775111111             12335677777777776532211   1222446677


Q ss_pred             EEEccCCccccc----CCccccCccccceeecccccccccCC----ccccccccCcccccccCcccccccCCcceEEeCC
Q 003200          656 VLILRSNQFHGP----LPKTICDLAFLQILDLADNNLSGAIP----KCISNLTGMVTVKSFTGSVVYREILPLVSLLDIS  727 (840)
Q Consensus       656 ~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls  727 (840)
                      .+.+..|.|...    +..++..++.|+.|||.+|.++..-.    ..++.+                   |+|+.|+++
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-------------------~~L~El~l~  249 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-------------------PHLRELNLG  249 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-------------------chheeeccc
Confidence            777777766421    22345666777777777776652221    122222                   333666666


Q ss_pred             CCcccccCcccc-----cCCCCCCeEeCCCCccccc----CCcchhccCCCCeEeCCCCcc
Q 003200          728 RNNFSGEILSEV-----TNLKALQSINFSFNTFTGR----IPESIGTMRALESVDFSVNQL  779 (840)
Q Consensus       728 ~N~l~~~~~~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l  779 (840)
                      +|.+...-...+     ...++|++|.+.+|.++..    +...+...+.|+.|+|++|++
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            666653332222     2245666666666665532    223334455566666666665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3e-11  Score=122.47  Aligned_cols=219  Identities=25%  Similarity=0.225  Sum_probs=133.6

Q ss_pred             CCCCCCCeEeccCccccCCCc-ccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCc
Q 003200          152 GNLSDLQFLDLSSNYLYVDNV-WWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRG  230 (840)
Q Consensus       152 ~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~  230 (840)
                      .++++|+...|.++.+..... .....+++++.|||+.|-+..+.........+|+|+.|+++.|.+......     ..
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-----~~  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-----NT  192 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-----cc
Confidence            345566666666655544333 345567777777777777777766666777788888888888877665432     12


Q ss_pred             ccCCCCCCEEECcCCCCCCC-CcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCC
Q 003200          231 LQNLTSLKHLDLDSNHFNSS-IPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCN  309 (840)
Q Consensus       231 l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~  309 (840)
                      -..+++|+.|.|+.|.++.. +...+..+++|+.|++..|............+..|++|+|++|+.+.-..-...+.++.
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            23567788888888877743 22234567788888888875333334445567777888888765554444455666677


Q ss_pred             CcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccc-cccccCCCCCC
Q 003200          310 LKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLI-PESFGQLSTLR  388 (840)
Q Consensus       310 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~  388 (840)
                      |+.|+++.+.+...                   ....+.    ..+....+++|+.|++..|++.... -..+..+++|+
T Consensus       273 L~~Lnls~tgi~si-------------------~~~d~~----s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  273 LNQLNLSSTGIASI-------------------AEPDVE----SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK  329 (505)
T ss_pred             hhhhhccccCcchh-------------------cCCCcc----chhhhcccccceeeecccCccccccccchhhccchhh
Confidence            77776666654321                   100000    0011235678888888888875331 12344467777


Q ss_pred             EEEccCCccc
Q 003200          389 ELQIYDNKLN  398 (840)
Q Consensus       389 ~L~L~~n~l~  398 (840)
                      .|.+..|.+.
T Consensus       330 ~l~~~~n~ln  339 (505)
T KOG3207|consen  330 HLRITLNYLN  339 (505)
T ss_pred             hhhccccccc
Confidence            7777777775

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=4e-10  Score=104.93  Aligned_cols=125  Identities=27%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             CCcccEEeccCCcCccccCcccc-CCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCccc-ccCCCCcE
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWM-SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISL-KNCTALAS  631 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~  631 (840)
                      ...+++|+|.+|.|+.+  +.+. .+.+|+.|++++|.++..  +.+..++.|+.|++++|+|+. ++..+ ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence            34567777777777632  2344 456777777777777743  246666777777777777763 33333 35677777


Q ss_pred             EeCCCCcccccCChhhhhccCCccEEEccCCcccccCC---ccccCccccceeec
Q 003200          632 LDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP---KTICDLAFLQILDL  683 (840)
Q Consensus       632 L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~L  683 (840)
                      |++++|++...-.-.....+++|++|++.+|.++...-   -.+..+|+|+.||-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            77777777543221222256666677777666653311   13445666666664

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.88  E-value=2.1e-09  Score=74.68  Aligned_cols=39  Identities=49%  Similarity=1.049  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhhhcCC-CCCCCCCCCCCC--CCCccccceecC
Q 003200           33 ETERRALLRFKQDLQ-DPSNRLASWTGD--GDCCTWAGVACG   71 (840)
Q Consensus        33 ~~~~~~ll~~k~~~~-~~~~~l~~W~~~--~~~c~w~gv~c~   71 (840)
                      ++|++||++||+++. +|.+.+.+|+..  .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999999 577899999965  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.88  E-value=1.3e-09  Score=127.25  Aligned_cols=162  Identities=28%  Similarity=0.328  Sum_probs=108.4

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCC
Q 003200          101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSF  180 (840)
Q Consensus       101 ~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  180 (840)
                      .|..++.|++|||++|.- +.++|..++.+-+||||+++++.+. .+|..+++|++|.+|++..+......+.....+.+
T Consensus       566 ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~  643 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS  643 (889)
T ss_pred             HHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc
Confidence            366799999999998743 3369999999999999999999988 88999999999999999988655555667777999


Q ss_pred             CCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCC----EEECcCCCCCCCCccccc
Q 003200          181 LEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLK----HLDLDSNHFNSSIPDWLY  256 (840)
Q Consensus       181 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~----~L~Ls~n~l~~~~p~~l~  256 (840)
                      ||+|.+..............+.++.+|+.+..........        ..+..+..|.    .+.+.++... ..+..+.
T Consensus       644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~--------e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~  714 (889)
T KOG4658|consen  644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLL--------EDLLGMTRLRSLLQSLSIEGCSKR-TLISSLG  714 (889)
T ss_pred             ccEEEeeccccccchhhHHhhhcccchhhheeecchhHhH--------hhhhhhHHHHHHhHhhhhcccccc-eeecccc
Confidence            9999987766444444444555666666666544433100        1122222222    2222222221 3344566


Q ss_pred             CCCCCcEEEcccCcccc
Q 003200          257 KFSPLECLNLRNNSLQG  273 (840)
Q Consensus       257 ~l~~L~~L~L~~n~l~~  273 (840)
                      .+.+|+.|.+.++.+..
T Consensus       715 ~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  715 SLGNLEELSILDCGISE  731 (889)
T ss_pred             cccCcceEEEEcCCCch
Confidence            67777777777776653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=3.4e-09  Score=80.95  Aligned_cols=60  Identities=40%  Similarity=0.557  Sum_probs=33.4

Q ss_pred             CCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcc
Q 003200          744 ALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL  803 (840)
Q Consensus       744 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  803 (840)
                      +|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555544445555555555555555555544445555555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=3.4e-09  Score=80.98  Aligned_cols=61  Identities=28%  Similarity=0.434  Sum_probs=56.8

Q ss_pred             CcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcc
Q 003200          719 PLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQL  779 (840)
Q Consensus       719 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  779 (840)
                      |+|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5679999999999977778899999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=1e-09  Score=120.44  Aligned_cols=228  Identities=26%  Similarity=0.210  Sum_probs=139.2

Q ss_pred             cCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCc
Q 003200          551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALA  630 (840)
Q Consensus       551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  630 (840)
                      +..+++++.|++.+|.+.... ..+..+++|++|++++|.|+...  .+..++.|+.|++.+|.|+..  ..+..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhh
Confidence            334567777777777776432 22566777777777777777553  355666677777777777622  3444467777


Q ss_pred             EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC
Q 003200          631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG  710 (840)
Q Consensus       631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  710 (840)
                      .+++++|.+...-+.. ...+.+++.+.+.+|.+...  ..+..+..+..+++..|.++..-+  +..+..         
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~---------  231 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVM---------  231 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchh---------
Confidence            7777777776443311 12567777777777777543  223334445555667776652111  000000         


Q ss_pred             cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccccc---CCcc-
Q 003200          711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGE---IPQS-  786 (840)
Q Consensus       711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~-  786 (840)
                              .+|+.+++++|++. .++..+..+..+..|++++|++...-  .+...+.+..+....|.+...   .... 
T Consensus       232 --------~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (414)
T KOG0531|consen  232 --------LHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYI  300 (414)
T ss_pred             --------HHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccc
Confidence                    02467788888876 33456677777888888888877322  245566777777777776522   1121 


Q ss_pred             ccCCCCCCeEeccCCcccccCC
Q 003200          787 MSSLTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       787 l~~l~~L~~L~ls~N~l~g~ip  808 (840)
                      ......+....+.+|+.....+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  301 TSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccccccccCccccccc
Confidence            4556777888888887766554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.76  E-value=8e-10  Score=121.21  Aligned_cols=241  Identities=25%  Similarity=0.303  Sum_probs=165.0

Q ss_pred             CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcc
Q 003200          526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSL  605 (840)
Q Consensus       526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  605 (840)
                      .+..+.++...+.+.+.... .    ..+..++.+.+..|.+.. +-..+..+.+|+.|++.+|+|... ...+..+++|
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~----~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L  120 (414)
T KOG0531|consen   48 PSDLEEIDLIFNLDGSDEDL-V----ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNL  120 (414)
T ss_pred             cchhhhhcchhccccchhhh-H----HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcc
Confidence            34555556555543321111 0    235677788888888874 334467788899999999998854 3336778899


Q ss_pred             cEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCC-ccccCccccceeecc
Q 003200          606 VWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP-KTICDLAFLQILDLA  684 (840)
Q Consensus       606 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls  684 (840)
                      ++|++++|+|+...  .+..++.|+.|++++|.++ .+.. +. .+..|+.+++++|++....+ . ...+.+++.+++.
T Consensus       121 ~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~-~~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~  194 (414)
T KOG0531|consen  121 QVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISG-LE-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLG  194 (414)
T ss_pred             hheecccccccccc--chhhccchhhheeccCcch-hccC-Cc-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhcc
Confidence            99999999987443  4566677899999999887 3332 22 37888888999998886655 2 4667888888888


Q ss_pred             cccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCC--CCeEeCCCCcccccCCcc
Q 003200          685 DNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKA--LQSINFSFNTFTGRIPES  762 (840)
Q Consensus       685 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~Ls~N~l~~~~p~~  762 (840)
                      +|.+..  ...+..+..+                   ..+++..|.++..-  .+..+..  |+.+++++|++. .++..
T Consensus       195 ~n~i~~--i~~~~~~~~l-------------------~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~  250 (414)
T KOG0531|consen  195 GNSIRE--IEGLDLLKKL-------------------VLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEG  250 (414)
T ss_pred             CCchhc--ccchHHHHHH-------------------HHhhcccccceecc--CcccchhHHHHHHhcccCccc-ccccc
Confidence            888761  1122222222                   45688888887322  2333333  899999999999 55567


Q ss_pred             hhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200          763 IGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       763 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  805 (840)
                      +..++.+..||+++|++...  +.+.....+..+....|++..
T Consensus       251 ~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~  291 (414)
T KOG0531|consen  251 LENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLAL  291 (414)
T ss_pred             ccccccccccchhhcccccc--ccccccchHHHhccCcchhcc
Confidence            78889999999999999743  345566777888888887763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.73  E-value=4.6e-09  Score=122.77  Aligned_cols=278  Identities=20%  Similarity=0.173  Sum_probs=119.2

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCc--ccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCE
Q 003200          106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQ--FVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEH  183 (840)
Q Consensus       106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~--i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~  183 (840)
                      ...|...+-+|.+.  .++.... .++|++|-+..|.  +....+..|..++.|++||+++|.-....|..++.+-+||+
T Consensus       523 ~~~rr~s~~~~~~~--~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE--HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh--hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            34444555444443  1222221 2345555555553  33222233445555555555554433344444555555555


Q ss_pred             EEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCC--CCCcccccCCCCC
Q 003200          184 LDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN--SSIPDWLYKFSPL  261 (840)
Q Consensus       184 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L  261 (840)
                      |++++..+..   +|..+.++.+|.+|++..+.....++      .....+++|++|.+......  ...-..+.++.+|
T Consensus       600 L~L~~t~I~~---LP~~l~~Lk~L~~Lnl~~~~~l~~~~------~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  600 LDLSDTGISH---LPSGLGNLKKLIYLNLEVTGRLESIP------GILLELQSLRVLRLPRSALSNDKLLLKELENLEHL  670 (889)
T ss_pred             ccccCCCccc---cchHHHHHHhhheecccccccccccc------chhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence            5555555443   23344455555555555554332221      34444666666666544311  1122223344444


Q ss_pred             cEEEcccCccccccchhhhcCCCCcEEecccc--cCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCC-CCC
Q 003200          262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN--IGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCV-SNG  338 (840)
Q Consensus       262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~  338 (840)
                      +.+.......  .+-..+..++.|..+...-.  .......+..+..+.+|+.|.+.++................. +++
T Consensus       671 ~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~  748 (889)
T KOG4658|consen  671 ENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN  748 (889)
T ss_pred             hhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence            4444432221  11112222333321111110  011223455566777777777777776543222111100000 002


Q ss_pred             CCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccc
Q 003200          339 LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN  398 (840)
Q Consensus       339 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  398 (840)
                      +..+...++... ..+.+....++|+.|.+..+.....+.+....+..++.+.+..+.+.
T Consensus       749 l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  749 LSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             HHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            222222222111 12223334577777777777655554444555555555555554444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.2e-09  Score=103.57  Aligned_cols=180  Identities=22%  Similarity=0.288  Sum_probs=118.6

Q ss_pred             CCCEEECcCCCCCCC-CcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccC-cccccCCCCCcEE
Q 003200          236 SLKHLDLDSNHFNSS-IPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRI-PRSMANFCNLKSV  313 (840)
Q Consensus       236 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L  313 (840)
                      .|++||||...++.. .-..++.|.+|+.|.+.++++.+.+...+..-.+|+.|+++.++.++..- .--+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            588888888776632 22345678888888888888888888888888889999988876655432 2236778889999


Q ss_pred             EcCCCcccccchHHHHhhccCCCCCCCEEEccCCccc---ccCccccCCCCCCCEEEccCCc-ccccccccccCCCCCCE
Q 003200          314 NLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY---GHLTDQLGQFRNLVTLNLANNS-IVGLIPESFGQLSTLRE  389 (840)
Q Consensus       314 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~  389 (840)
                      ++++|.+..+.....-   .....+|+.|+++++.-.   ..+..-...+++|.+|||++|. ++......|.+++.|++
T Consensus       266 NlsWc~l~~~~Vtv~V---~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAV---AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             CchHhhccchhhhHHH---hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            9998887665433221   122237888888876421   1122223467888888888873 44333445667888888


Q ss_pred             EEccCCccccccCh--hhhccCCCCCEEEccCc
Q 003200          390 LQIYDNKLNGTLSE--FHFANLTKLSWFRVGGN  420 (840)
Q Consensus       390 L~L~~n~l~~~i~~--~~~~~l~~L~~L~L~~n  420 (840)
                      |.++.|..  .+|+  ..+...+.|.+|++.++
T Consensus       343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            88888873  3333  13455566666665544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=3.6e-09  Score=102.15  Aligned_cols=182  Identities=19%  Similarity=0.149  Sum_probs=88.5

Q ss_pred             CcEEeccCCcccCC-CCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEE
Q 003200          133 LRYLNLSDTQFVGM-IPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELR  211 (840)
Q Consensus       133 L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  211 (840)
                      |++||||+..|+.. +-.-+..+.+|+.|.+.++++.+.....+++-.+|+.|+++.+.--........+.+|+.|.+|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            44555554444321 11122344455555555554444444444555555555555443322222333455667777777


Q ss_pred             cCCCCCCcCCCCCCCCCCcccC-CCCCCEEECcCCCC--C-CCCcccccCCCCCcEEEcccCc-cccccchhhhcCCCCc
Q 003200          212 LSNCSLHHFPTLASPIPRGLQN-LTSLKHLDLDSNHF--N-SSIPDWLYKFSPLECLNLRNNS-LQGTISDAIGNLTSVS  286 (840)
Q Consensus       212 L~~n~l~~~~~~~~~l~~~l~~-l~~L~~L~Ls~n~l--~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~  286 (840)
                      ++||.+....-  .   ..+.. -.+|+.|+++++.-  . ..+..-...+++|..|||++|. ++......|.+++.|+
T Consensus       267 lsWc~l~~~~V--t---v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  267 LSWCFLFTEKV--T---VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             chHhhccchhh--h---HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            77776554221  0   01111 13566666666531  1 1111222456677777776653 3434445566677777


Q ss_pred             EEecccccCccccCcccccCCCCCcEEEcCCCc
Q 003200          287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVH  319 (840)
Q Consensus       287 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~  319 (840)
                      +|.++.|-.+....--.+...+.|.+|++.++-
T Consensus       342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            777766532222222234556667777776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=5.6e-09  Score=112.45  Aligned_cols=196  Identities=27%  Similarity=0.303  Sum_probs=115.6

Q ss_pred             CCCcCEEEccCCcCCCCC-CcccCCCCcccEEEccCCcCcCCCCcccccC-CCCcEEeCCCCccc----------ccCCh
Q 003200          578 YQNLKVLKLSNNKFSGNL-PNSLGSITSLVWLYLRKNRLSGKIPISLKNC-TALASLDVDENEFV----------GNIPT  645 (840)
Q Consensus       578 l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~----------~~~p~  645 (840)
                      +++++.|.+-.-.-.+.. |-.+..+.+|++|.+.+|.+..  -..+..+ ..|+.|-.. |.+.          |.+..
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc
Confidence            344444544333222222 4456667899999999998863  1111111 223333221 1111          11111


Q ss_pred             hhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEe
Q 003200          646 WFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLD  725 (840)
Q Consensus       646 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~  725 (840)
                      .+  ....|...+.++|++. ....++.-++.++.|+|++|++... . .+..                   ++.|+.||
T Consensus       160 s~--~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~-------------------l~~LkhLD  215 (1096)
T KOG1859|consen  160 SP--VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRR-------------------LPKLKHLD  215 (1096)
T ss_pred             ch--hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHh-------------------cccccccc
Confidence            11  1235667777788776 4456677778888888888888721 1 2222                   34458888


Q ss_pred             CCCCcccccCcc-cccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC-ccccCCCCCCeEeccCCcc
Q 003200          726 ISRNNFSGEILS-EVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP-QSMSSLTFLNHLNLSNNNL  803 (840)
Q Consensus       726 Ls~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l  803 (840)
                      |++|.+. .+|. ....+. |+.|++++|.++. +- .+.+|.+|+.||+++|-+.+--. .-+..|..|+.|+|.+|++
T Consensus       216 lsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  216 LSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-LR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccchhc-cccccchhhhh-heeeeecccHHHh-hh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            8888887 3332 233444 8888888888873 32 46788888888888888765311 2245567788888888887


Q ss_pred             c
Q 003200          804 T  804 (840)
Q Consensus       804 ~  804 (840)
                      .
T Consensus       292 ~  292 (1096)
T KOG1859|consen  292 C  292 (1096)
T ss_pred             c
Confidence            4

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=1.3e-07  Score=91.58  Aligned_cols=110  Identities=24%  Similarity=0.256  Sum_probs=67.7

Q ss_pred             CCCCCeEeccCccccCCCcc-cc-cCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcc
Q 003200          154 LSDLQFLDLSSNYLYVDNVW-WL-SGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGL  231 (840)
Q Consensus       154 l~~L~~L~Ls~n~~~~~~~~-~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l  231 (840)
                      ...++.|-+.++.|...... .| ...+.++.+||.+|.+++++++...+.++|.|+.|+++.|++...+.   .+|   
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~---~lp---  117 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK---SLP---  117 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc---cCc---
Confidence            33455555666655443322 22 34678888999999999988888888888999999999888876542   111   


Q ss_pred             cCCCCCCEEECcCCCCCCC-CcccccCCCCCcEEEcccC
Q 003200          232 QNLTSLKHLDLDSNHFNSS-IPDWLYKFSPLECLNLRNN  269 (840)
Q Consensus       232 ~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n  269 (840)
                      ....+|++|-|.+..+.-. ....+..++.++.|.++.|
T Consensus       118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            3456677777766555422 1222334444444444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=5.2e-09  Score=112.67  Aligned_cols=160  Identities=29%  Similarity=0.376  Sum_probs=86.9

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCC--------ccccc----------------cCC------CCCcEEeccCCcccCCCC
Q 003200           99 NPALLDLKHLSYLDLSSNDFQGVQ--------IPRFI----------------GSM------RNLRYLNLSDTQFVGMIP  148 (840)
Q Consensus        99 ~~~~~~l~~L~~L~Ls~n~~~~~~--------~p~~l----------------~~l------~~L~~L~Ls~n~i~~~~p  148 (840)
                      |-.|..++.||+|.|.++.+....        +-..|                +..      ..|.+.+.++|.+. .+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD  180 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD  180 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence            556778888888888888765210        00000                000      13444455555554 344


Q ss_pred             CCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCC
Q 003200          149 PQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIP  228 (840)
Q Consensus       149 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~  228 (840)
                      .++.-++.|+.|||++|++....  .+..+++|++|||+.|.+..++.+...  .+. |+.|.+++|.++..        
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~--gc~-L~~L~lrnN~l~tL--------  247 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMV--GCK-LQLLNLRNNALTTL--------  247 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchh--hhh-heeeeecccHHHhh--------
Confidence            45555566666666666655433  556666666666666666655443222  122 66666666666554        


Q ss_pred             CcccCCCCCCEEECcCCCCCCCC-cccccCCCCCcEEEcccCccc
Q 003200          229 RGLQNLTSLKHLDLDSNHFNSSI-PDWLYKFSPLECLNLRNNSLQ  272 (840)
Q Consensus       229 ~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~  272 (840)
                      ..+.++++|+.||+++|-+.+.- -..++.+..|+.|.|.+|.+.
T Consensus       248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            34566666666666666554321 122334455666666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=4.2e-08  Score=83.83  Aligned_cols=86  Identities=23%  Similarity=0.366  Sum_probs=47.5

Q ss_pred             eEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCC
Q 003200          722 SLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNN  801 (840)
Q Consensus       722 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  801 (840)
                      +.+++++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.++-+||...|.+. .||..+-.-+.....++.++
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            55666666665 45555666666666666666666 45555555666666666666655 45544332233333344555


Q ss_pred             cccccCCCC
Q 003200          802 NLTGKIPLS  810 (840)
Q Consensus       802 ~l~g~ip~~  810 (840)
                      ++.|.-|..
T Consensus       157 pl~~~~~~k  165 (177)
T KOG4579|consen  157 PLGDETKKK  165 (177)
T ss_pred             cccccCccc
Confidence            555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.30  E-value=2.8e-08  Score=84.83  Aligned_cols=113  Identities=23%  Similarity=0.365  Sum_probs=90.3

Q ss_pred             ccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccc-cCCCCCCeEeCCCCcc
Q 003200          677 FLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTF  755 (840)
Q Consensus       677 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l  755 (840)
                      .+..+||++|.+. .++.....+...                ..|+..+|++|.+.. .|+.| ...+..+.|++++|.+
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~----------------~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~nei   89 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKG----------------YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEI   89 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCC----------------ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhh
Confidence            3567888888886 666655555443                234789999999984 45555 5567899999999999


Q ss_pred             cccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCC
Q 003200          756 TGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS  810 (840)
Q Consensus       756 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  810 (840)
                      . .+|..+..++.|+.|+++.|.+. ..|+-+..|.++-.|+.-.|.+. +||..
T Consensus        90 s-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen   90 S-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             h-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            9 89999999999999999999999 78888888999999998888764 46654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=8.3e-08  Score=91.68  Aligned_cols=92  Identities=29%  Similarity=0.269  Sum_probs=48.9

Q ss_pred             ccCCCCCCEEeCCCCCCCCC---CccccccCCCCCcEEeccCCcc---cCCCC-------CCCCCCCCCCeEeccCcccc
Q 003200          102 LLDLKHLSYLDLSSNDFQGV---QIPRFIGSMRNLRYLNLSDTQF---VGMIP-------PQLGNLSDLQFLDLSSNYLY  168 (840)
Q Consensus       102 ~~~l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~i---~~~~p-------~~l~~l~~L~~L~Ls~n~~~  168 (840)
                      +..+..+..+|||+|.|...   .+...|.+-++|+..++++-..   ...+|       .++-+|++|+..+||+|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34466667777777766431   1223344456666666665311   11111       23456666666677666665


Q ss_pred             CCCcc----cccCCCCCCEEEccCcCCCC
Q 003200          169 VDNVW----WLSGLSFLEHLDLRSVNLSK  193 (840)
Q Consensus       169 ~~~~~----~~~~l~~L~~L~Ls~n~l~~  193 (840)
                      ...+.    .+++-+.|+||.+++|.+..
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp  134 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGP  134 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCc
Confidence            44443    34455666666666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=2.7e-07  Score=89.42  Aligned_cols=207  Identities=20%  Similarity=0.190  Sum_probs=108.0

Q ss_pred             CCcccEEeccCCcCcc--ccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCC-CCcccccCCCCc
Q 003200          554 TKSLEGLKLTDNYLQG--EIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK-IPISLKNCTALA  630 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~  630 (840)
                      ++.++++||.+|.++.  .+...+.+++.|+.|+++.|.+...+...=....+|+.|.|.+..+.-. ....+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4567777777777663  2333355667777777777776643321102345666666666554321 222334455555


Q ss_pred             EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC
Q 003200          631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG  710 (840)
Q Consensus       631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  710 (840)
                      +|.+|.|.+               +.+++..|.+...-       +.+++|..-.|...                 -|..
T Consensus       150 elHmS~N~~---------------rq~n~Dd~c~e~~s-------~~v~tlh~~~c~~~-----------------~w~~  190 (418)
T KOG2982|consen  150 ELHMSDNSL---------------RQLNLDDNCIEDWS-------TEVLTLHQLPCLEQ-----------------LWLN  190 (418)
T ss_pred             hhhhccchh---------------hhhccccccccccc-------hhhhhhhcCCcHHH-----------------HHHH
Confidence            555554432               12222222222111       12223332222211                 0011


Q ss_pred             cccccccCCcceEEeCCCCccccc-CcccccCCCCCCeEeCCCCccccc-CCcchhccCCCCeEeCCCCcccccCCcc--
Q 003200          711 SVVYREILPLVSLLDISRNNFSGE-ILSEVTNLKALQSINFSFNTFTGR-IPESIGTMRALESVDFSVNQLSGEIPQS--  786 (840)
Q Consensus       711 ~~~~~~~~~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--  786 (840)
                      .....+.+|++..+-+..|.+... ..+....++.+-.|+|+.|++..- --+++..+++|.-|.+++|++...+...  
T Consensus       191 ~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er  270 (418)
T KOG2982|consen  191 KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER  270 (418)
T ss_pred             HHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcc
Confidence            112223466667777777766432 233455566777888888887731 1245677788888888888876544322  


Q ss_pred             ----ccCCCCCCeEecc
Q 003200          787 ----MSSLTFLNHLNLS  799 (840)
Q Consensus       787 ----l~~l~~L~~L~ls  799 (840)
                          ++.+++++.||=+
T Consensus       271 r~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  271 RFLLIARLTKVQVLNGS  287 (418)
T ss_pred             eEEEEeeccceEEecCc
Confidence                5677888877743

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.17  E-value=9e-06  Score=85.37  Aligned_cols=57  Identities=18%  Similarity=0.143  Sum_probs=34.2

Q ss_pred             ccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCC
Q 003200          575 WMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN  637 (840)
Q Consensus       575 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N  637 (840)
                      +..+.+++.|++++|.++ .+|. +  ..+|+.|.+++|.-...+|..+.  ++|+.|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            344677888888888776 3442 2  24577777777543335554332  45666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.01  E-value=9.7e-06  Score=74.70  Aligned_cols=84  Identities=20%  Similarity=0.177  Sum_probs=47.8

Q ss_pred             CCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEE
Q 003200          131 RNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL  210 (840)
Q Consensus       131 ~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L  210 (840)
                      .+...+||++|++...  ..|..++.|.+|.+++|+|+.+.+.--..+++|+.|.|.+|.+..+.+. ..+..||+|++|
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCcccee
Confidence            4556777777776532  3466677777777777777766666555566666666666666554321 222333444444


Q ss_pred             EcCCCCC
Q 003200          211 RLSNCSL  217 (840)
Q Consensus       211 ~L~~n~l  217 (840)
                      .+-+|..
T Consensus       119 tll~Npv  125 (233)
T KOG1644|consen  119 TLLGNPV  125 (233)
T ss_pred             eecCCch
Confidence            4444433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.99  E-value=9.4e-07  Score=84.63  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=18.4

Q ss_pred             CCCCCcEEeccCCcccCC----CCCCCCCCCCCCeEeccC
Q 003200          129 SMRNLRYLNLSDTQFVGM----IPPQLGNLSDLQFLDLSS  164 (840)
Q Consensus       129 ~l~~L~~L~Ls~n~i~~~----~p~~l~~l~~L~~L~Ls~  164 (840)
                      .+..++.++||+|.|...    +...+.+-.+|+..+++.
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd   67 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD   67 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence            355666666666665432    222334445555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=5.9e-06  Score=57.43  Aligned_cols=36  Identities=28%  Similarity=0.536  Sum_probs=18.7

Q ss_pred             CCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200          744 ALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       744 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                      +|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555555

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.84  E-value=5.1e-07  Score=91.92  Aligned_cols=283  Identities=16%  Similarity=0.128  Sum_probs=126.0

Q ss_pred             CCCEEeCCCCCCCCC-CccccccCCCCCcEEeccCCcc-cCCCCCCC-CCCCCCCeEeccCc-cccCCCcc-cccCCCCC
Q 003200          107 HLSYLDLSSNDFQGV-QIPRFIGSMRNLRYLNLSDTQF-VGMIPPQL-GNLSDLQFLDLSSN-YLYVDNVW-WLSGLSFL  181 (840)
Q Consensus       107 ~L~~L~Ls~n~~~~~-~~p~~l~~l~~L~~L~Ls~n~i-~~~~p~~l-~~l~~L~~L~Ls~n-~~~~~~~~-~~~~l~~L  181 (840)
                      .|+.|.++++.-.+. .+-.+..+++++++|++.++.- ++..-..+ ..+++|++|++..| .++..... ...++++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            466666666542221 2233444566666666666542 11111111 35566666666664 22222222 23456666


Q ss_pred             CEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCC-CCCCCc-ccccCCC
Q 003200          182 EHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNH-FNSSIP-DWLYKFS  259 (840)
Q Consensus       182 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~-l~~~~p-~~l~~l~  259 (840)
                      ++++++++.-..-.........+..++.+.+.+|.=.....    +-..=+.+..+.++++..+. ++...- ..=..+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~----l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA----LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH----HHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            66666665332222222223344445555444432111100    00001122233344433332 111110 0112345


Q ss_pred             CCcEEEcccCcccc-ccchhh-hcCCCCcEEecccccCccccCcccc-cCCCCCcEEEcCCCcccccchHHHHhh-ccCC
Q 003200          260 PLECLNLRNNSLQG-TISDAI-GNLTSVSWLDLSINIGLQGRIPRSM-ANFCNLKSVNLRGVHLSQEISEILDIF-SGCV  335 (840)
Q Consensus       260 ~L~~L~L~~n~l~~-~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~  335 (840)
                      .||+|+.+++.-.+ ..-..+ .+..+|+.+.++.+..++..--..+ .+++.|+.+++..+......  .+..+ ..|+
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C~  372 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLSRNCP  372 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhccCCc
Confidence            55666665553321 111122 2455666666665443333222222 23455666666555432211  11111 1111


Q ss_pred             CCCCCEEEccCCcccccC-----ccccCCCCCCCEEEccCCccc-ccccccccCCCCCCEEEccCCcc
Q 003200          336 SNGLESLDMRSSSIYGHL-----TDQLGQFRNLVTLNLANNSIV-GLIPESFGQLSTLRELQIYDNKL  397 (840)
Q Consensus       336 ~~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l  397 (840)
                        .++++.++.+......     ...-..+..|+.+.+++++.. +..-+.+..+++|+.+++..++-
T Consensus       373 --~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  373 --RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             --hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence              5666666655432211     122234567888888888643 33445567788999988888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.3e-05  Score=55.73  Aligned_cols=38  Identities=42%  Similarity=0.695  Sum_probs=33.0

Q ss_pred             CCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200          767 RALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       767 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  805 (840)
                      ++|++|++++|+++ .+|..+++|++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 678789999999999999999874

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.80  E-value=7.8e-05  Score=78.47  Aligned_cols=76  Identities=20%  Similarity=0.303  Sum_probs=48.0

Q ss_pred             cCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCC-cCcCCCCcccccCCCC
Q 003200          551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKN-RLSGKIPISLKNCTAL  629 (840)
Q Consensus       551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L  629 (840)
                      +..+..++.|++++|.++ .+|.   -..+|++|.++++.-...+|+.+.  .+|+.|++++| .+. .+|      .+|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence            334577888888888776 3442   134588888877554446665553  57888888888 443 445      346


Q ss_pred             cEEeCCCCcc
Q 003200          630 ASLDVDENEF  639 (840)
Q Consensus       630 ~~L~ls~N~l  639 (840)
                      +.|+++.+..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            6677665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.67  E-value=1.9e-05  Score=90.57  Aligned_cols=97  Identities=21%  Similarity=0.204  Sum_probs=44.4

Q ss_pred             CCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcc
Q 003200          152 GNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGL  231 (840)
Q Consensus       152 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l  231 (840)
                      .++++|..||+|+.+++..  ..++.+++|+.|.+.+-.+....++ ..+-++++|+.||+|.......+......-+.-
T Consensus       170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~  246 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG  246 (699)
T ss_pred             hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence            3444444445544444332  3344444444444444444433222 222345555555555554433321100000222


Q ss_pred             cCCCCCCEEECcCCCCCCCC
Q 003200          232 QNLTSLKHLDLDSNHFNSSI  251 (840)
Q Consensus       232 ~~l~~L~~L~Ls~n~l~~~~  251 (840)
                      ..+++|+.||.|+..+.+.+
T Consensus       247 ~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  247 MVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             ccCccccEEecCCcchhHHH
Confidence            34678888888877766443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.65  E-value=1.1e-05  Score=92.31  Aligned_cols=140  Identities=21%  Similarity=0.300  Sum_probs=103.3

Q ss_pred             CCCCcEEeccCCccc-CCCCCCC-CCCCCCCeEeccCccccCCC-cccccCCCCCCEEEccCcCCCCCcchhhhcCCCCC
Q 003200          130 MRNLRYLNLSDTQFV-GMIPPQL-GNLSDLQFLDLSSNYLYVDN-VWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPS  206 (840)
Q Consensus       130 l~~L~~L~Ls~n~i~-~~~p~~l-~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~  206 (840)
                      -.+|++||+++...- ..-|..+ ..+|.|++|.+++-.+...+ .....++++|+.||+|+.+++.+    ..++++++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~Lkn  196 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKN  196 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhcccc
Confidence            368999999886432 1222233 46899999999987665554 33567899999999999999886    56789999


Q ss_pred             CCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCC--c----ccccCCCCCcEEEcccCccccccchh
Q 003200          207 LLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSI--P----DWLYKFSPLECLNLRNNSLQGTISDA  278 (840)
Q Consensus       207 L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~~~~  278 (840)
                      |+.|.+.+-.+......     ..+..+++|++||+|........  .    +.-..+++|+.||.+++.+...+-+.
T Consensus       197 Lq~L~mrnLe~e~~~~l-----~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDL-----IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HHHHhccCCCCCchhhH-----HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            99999999888764332     56788999999999987654321  1    11235789999999998887654443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.62  E-value=0.00012  Score=67.59  Aligned_cols=105  Identities=27%  Similarity=0.299  Sum_probs=66.3

Q ss_pred             CCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCC
Q 003200          155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNL  234 (840)
Q Consensus       155 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l  234 (840)
                      .....+||++|.+.  ....|.+++.|.+|.+++|+|+.+......  .+++|..|.|.+|++..+...     ..+..|
T Consensus        42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~dl-----~pLa~~  112 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDT--FLPNLKTLILTNNSIQELGDL-----DPLASC  112 (233)
T ss_pred             cccceecccccchh--hcccCCCccccceEEecCCcceeeccchhh--hccccceEEecCcchhhhhhc-----chhccC
Confidence            35678889988764  344577888888888888888877443322  356777777777777665443     446666


Q ss_pred             CCCCEEECcCCCCCCCC---cccccCCCCCcEEEccc
Q 003200          235 TSLKHLDLDSNHFNSSI---PDWLYKFSPLECLNLRN  268 (840)
Q Consensus       235 ~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~L~~  268 (840)
                      ++|++|.+-+|..+..-   --.+..+++|++||+..
T Consensus       113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            67777777666654221   11234455555555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.57  E-value=6.9e-06  Score=83.88  Aligned_cols=261  Identities=15%  Similarity=0.049  Sum_probs=121.7

Q ss_pred             ccCCCCCCEEECcCCCC-CCCCcccc-cCCCCCcEEEcccCc-cccccch-hhhcCCCCcEEecccccCcccc-Cccccc
Q 003200          231 LQNLTSLKHLDLDSNHF-NSSIPDWL-YKFSPLECLNLRNNS-LQGTISD-AIGNLTSVSWLDLSINIGLQGR-IPRSMA  305 (840)
Q Consensus       231 l~~l~~L~~L~Ls~n~l-~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~-~~~~l~  305 (840)
                      -..++++++|.+.++.. +...-..+ ..+++|++|++..|. ++...-. -...+++|++++++++..+.+. +.....
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r  239 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR  239 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence            34455555555555541 11111112 245666666666643 3332222 2345677777777776555542 223344


Q ss_pred             CCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCcc--ccCCCCCCCEEEccCCccc-cccccc-c
Q 003200          306 NFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTD--QLGQFRNLVTLNLANNSIV-GLIPES-F  381 (840)
Q Consensus       306 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~-~~~~~~-l  381 (840)
                      ++..++.+.+.+|.-.+  .+.+..... .-..+.++++..|.......-  .-..+..|+.++.+++.-. ...-.. -
T Consensus       240 G~~~l~~~~~kGC~e~~--le~l~~~~~-~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg  316 (483)
T KOG4341|consen  240 GCKELEKLSLKGCLELE--LEALLKAAA-YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG  316 (483)
T ss_pred             cchhhhhhhhccccccc--HHHHHHHhc-cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence            55556666555543221  111111110 001344455444422111110  0123556777777766432 211112 2


Q ss_pred             cCCCCCCEEEccCCccccccChhh-hccCCCCCEEEccCcccceec--cCCCCCccCccEEecccccCCCCC-----Ccc
Q 003200          382 GQLSTLRELQIYDNKLNGTLSEFH-FANLTKLSWFRVGGNQLTFEV--KHDWIPPFQLVALGLHNCYVGSRF-----PQW  453 (840)
Q Consensus       382 ~~l~~L~~L~L~~n~l~~~i~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~-----~~~  453 (840)
                      .++++|+.|.++.++.-+...... -.+.+.|+.+++.++......  .......+.|+++.++.|+.....     ...
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            346777777777776322222112 234566777776665543222  222234556666666666432211     112


Q ss_pred             ccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcc
Q 003200          454 LHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQ  494 (840)
Q Consensus       454 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~  494 (840)
                      -.....|+.+.++++.........+...+++|+.+++.+++
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            23355566666666665554444445555566665555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.45  E-value=5e-05  Score=73.43  Aligned_cols=96  Identities=22%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             ccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCC--cccCCCCCCCCCCCCCCeEeccCccccC-CCc
Q 003200           96 GKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDT--QFVGMIPPQLGNLSDLQFLDLSSNYLYV-DNV  172 (840)
Q Consensus        96 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n--~i~~~~p~~l~~l~~L~~L~Ls~n~~~~-~~~  172 (840)
                      |.+..-.-.+..|+.|++.+..++..   ..+-.+++|++|.+|.|  .+++.++.....+++|++|++++|++.. ...
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl  109 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL  109 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence            33444444555666666666665532   23445778888888888  6666666555666788888888887763 233


Q ss_pred             ccccCCCCCCEEEccCcCCCCC
Q 003200          173 WWLSGLSFLEHLDLRSVNLSKA  194 (840)
Q Consensus       173 ~~~~~l~~L~~L~Ls~n~l~~~  194 (840)
                      ..+..+.+|..|++.+|..+..
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l  131 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNL  131 (260)
T ss_pred             chhhhhcchhhhhcccCCcccc
Confidence            4455556666666666655544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.12  E-value=0.0012  Score=59.37  Aligned_cols=121  Identities=16%  Similarity=0.192  Sum_probs=56.9

Q ss_pred             cCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCc
Q 003200          551 VNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALA  630 (840)
Q Consensus       551 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  630 (840)
                      +.++++|+.+.+.. .+......+|.++++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            44566777777764 455555667777777888887775 5555556677777788887765 44334445666677777


Q ss_pred             EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCcccc
Q 003200          631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFL  678 (840)
Q Consensus       631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  678 (840)
                      .+++..+ +. .++...+... +++.+.+.. .+.......|.++++|
T Consensus        85 ~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   85 NIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            7777654 33 3343333344 666666654 3333444555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.00  E-value=0.00021  Score=69.22  Aligned_cols=68  Identities=16%  Similarity=0.180  Sum_probs=38.6

Q ss_pred             cccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCc--cccCCCcccccCCCCCCEEEccCcCCCC
Q 003200          124 PRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSN--YLYVDNVWWLSGLSFLEHLDLRSVNLSK  193 (840)
Q Consensus       124 p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n--~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  193 (840)
                      ......+..|+.|++.+..++..  ..+-.|++|++|+++.|  ++......-...+++|++|++++|++..
T Consensus        36 ~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   36 GGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             ccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence            33334456677777666665532  23556677777777777  4443333344445666666666665554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.95  E-value=0.0018  Score=58.25  Aligned_cols=58  Identities=16%  Similarity=0.159  Sum_probs=20.7

Q ss_pred             ccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEc
Q 003200          127 IGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL  186 (840)
Q Consensus       127 l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L  186 (840)
                      +..+++|+.+.+.. .+...-..+|.++++|+.+.+.++ +.......|.++++|+.+.+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence            34444555555543 233333344455555555555443 33333334444444444444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.0002  Score=69.43  Aligned_cols=100  Identities=29%  Similarity=0.206  Sum_probs=56.9

Q ss_pred             CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCC-cccccCCCCcEEe
Q 003200          555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIP-ISLKNCTALASLD  633 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~  633 (840)
                      .+.+.|+..++.++++  .....++.|++|.||-|+|+..-  .|..|+.|++|+|..|.|..... ..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3455666666666533  23345666666777766666442  35666667777777766652211 2456667777777


Q ss_pred             CCCCcccccCChh----hhhccCCccEEE
Q 003200          634 VDENEFVGNIPTW----FGERFSRMLVLI  658 (840)
Q Consensus       634 ls~N~l~~~~p~~----~~~~l~~L~~L~  658 (840)
                      |..|.-.|.-+..    ....+++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777666555432    222455555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.19  E-value=0.00048  Score=78.08  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=18.6

Q ss_pred             CCEEEccCCccccc-ccccccC-CCCCCEEEccCCcc
Q 003200          363 LVTLNLANNSIVGL-IPESFGQ-LSTLRELQIYDNKL  397 (840)
Q Consensus       363 L~~L~L~~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l  397 (840)
                      ++.|+++.+..... .-..... +..++.+++.++..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            77777777754322 1111111 55667777776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.01  E-value=0.00028  Score=68.39  Aligned_cols=83  Identities=23%  Similarity=0.226  Sum_probs=53.5

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCC-cccccCCCCCC
Q 003200          104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDN-VWWLSGLSFLE  182 (840)
Q Consensus       104 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~  182 (840)
                      .+.+.+.|++-++.+.++.+   ..+++.|++|.||-|.|+..-  .+..|++|+.|+|..|.|.... ...+.++++|+
T Consensus        17 dl~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            45566777777777776533   345677888888888777443  3677777777777777665442 34555666666


Q ss_pred             EEEccCcCC
Q 003200          183 HLDLRSVNL  191 (840)
Q Consensus       183 ~L~Ls~n~l  191 (840)
                      .|-|..|.-
T Consensus        92 ~LWL~ENPC  100 (388)
T KOG2123|consen   92 TLWLDENPC  100 (388)
T ss_pred             hHhhccCCc
Confidence            666655543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.94  E-value=0.0016  Score=73.84  Aligned_cols=136  Identities=27%  Similarity=0.249  Sum_probs=63.7

Q ss_pred             CCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCC-CCCcCCCCCCCCCCcccCCCCCCEEECcCCC-CCCCCcccc
Q 003200          178 LSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNC-SLHHFPTLASPIPRGLQNLTSLKHLDLDSNH-FNSSIPDWL  255 (840)
Q Consensus       178 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l  255 (840)
                      ++.|+.|.+..+.-............++.|++|+++.+ ......+.  ........+++|+.|+++++. ++...-..+
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL--LLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh--HhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            45555555555432222223344455666666666653 11111100  001233445667777777666 443333333


Q ss_pred             cC-CCCCcEEEcccCc-cccc-cchhhhcCCCCcEEecccccCcccc-CcccccCCCCCcEEEc
Q 003200          256 YK-FSPLECLNLRNNS-LQGT-ISDAIGNLTSVSWLDLSINIGLQGR-IPRSMANFCNLKSVNL  315 (840)
Q Consensus       256 ~~-l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~l~~l~~L~~L~l  315 (840)
                      +. +++|++|.+.+|. ++.. +......++.|++|+++++..+... +.....++++++.+.+
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            32 5677777766665 3332 2223345666777777765443221 2222333444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.73  E-value=0.0042  Score=35.75  Aligned_cols=18  Identities=50%  Similarity=0.720  Sum_probs=7.8

Q ss_pred             CCeEeCCCCcccccCCccc
Q 003200          769 LESVDFSVNQLSGEIPQSM  787 (840)
Q Consensus       769 L~~L~Ls~N~l~~~~p~~l  787 (840)
                      |++|||++|+++ .+|.+|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.41  E-value=0.0062  Score=35.01  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=11.5

Q ss_pred             CCeEeCCCCcccccCCcchhc
Q 003200          745 LQSINFSFNTFTGRIPESIGT  765 (840)
Q Consensus       745 L~~L~Ls~N~l~~~~p~~l~~  765 (840)
                      |++|||++|+++ .+|.+|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            556666666666 55555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.74  E-value=0.00046  Score=75.85  Aligned_cols=83  Identities=22%  Similarity=0.184  Sum_probs=44.2

Q ss_pred             ccEEEccCcccccccc-----cccCCCcccEEEcccCcCCCCC--------CCCCCCCcEEEccCCcCcccCCchhhhcc
Q 003200          485 LKFLDVGLNQFHGKIS-----NLTKNTQLLFLSVNSNNMSGPL--------PLVSSNLVYLDFSNNSFSGSISHFLCYRV  551 (840)
Q Consensus       485 L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~l~~n~l~~~~--------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  551 (840)
                      +..+.+.+|.+.....     .+...+.|..|+++.|.+.+.-        +.....+++|++..|.+++.....+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6677777777765422     2333456666666666665311        11113445555555555555555555555


Q ss_pred             CCCCcccEEeccCCcC
Q 003200          552 NETKSLEGLKLTDNYL  567 (840)
Q Consensus       552 ~~~~~L~~L~Ls~n~l  567 (840)
                      .....++.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            5555555555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.64  E-value=0.00055  Score=75.22  Aligned_cols=182  Identities=23%  Similarity=0.230  Sum_probs=95.8

Q ss_pred             ccEEEcccCcCCCCCCC-------CCCCCcEEEccCCcCcccCCchhhhccCCC-CcccEEeccCCcCccc----cCccc
Q 003200          508 LLFLSVNSNNMSGPLPL-------VSSNLVYLDFSNNSFSGSISHFLCYRVNET-KSLEGLKLTDNYLQGE----IPDCW  575 (840)
Q Consensus       508 L~~L~l~~n~l~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~----~~~~~  575 (840)
                      +..+.+.+|.+......       ..+.|..|++++|.+.+.....++..+... ..+++|++..|.+++.    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55666666666543222       145666777777777655555555555554 5566677766666542    33344


Q ss_pred             cCCCCcCEEEccCCcCCC----CCCcccC----CCCcccEEEccCCcCcCCC----CcccccCCC-CcEEeCCCCccccc
Q 003200          576 MSYQNLKVLKLSNNKFSG----NLPNSLG----SITSLVWLYLRKNRLSGKI----PISLKNCTA-LASLDVDENEFVGN  642 (840)
Q Consensus       576 ~~l~~L~~L~Ls~n~l~~----~~~~~l~----~l~~L~~L~L~~n~l~~~~----p~~l~~l~~-L~~L~ls~N~l~~~  642 (840)
                      .....++.++++.|.+..    .++..+.    ...++++|.+.+|.++...    ...+...+. +..+++..|++.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            456667777777776632    1122222    3456666777776665211    112223333 55566666665533


Q ss_pred             CChhhhhcc----CCccEEEccCCcccccC----CccccCccccceeeccccccc
Q 003200          643 IPTWFGERF----SRMLVLILRSNQFHGPL----PKTICDLAFLQILDLADNNLS  689 (840)
Q Consensus       643 ~p~~~~~~l----~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~Ls~N~l~  689 (840)
                      .-..+...+    ..+++++++.|.|+...    ...+..++.++++.+++|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            121111111    34456666666665432    233344556666666666654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.62  E-value=0.065  Score=28.47  Aligned_cols=13  Identities=38%  Similarity=0.639  Sum_probs=4.6

Q ss_pred             CCCeEeCCCCccc
Q 003200          768 ALESVDFSVNQLS  780 (840)
Q Consensus       768 ~L~~L~Ls~N~l~  780 (840)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.13  E-value=0.0067  Score=57.53  Aligned_cols=83  Identities=18%  Similarity=0.207  Sum_probs=72.9

Q ss_pred             cceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEecc
Q 003200          720 LVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLS  799 (840)
Q Consensus       720 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  799 (840)
                      ..+.||++.|++. ..-..|+-++.|..||++.|.+. ..|..++++..+..+++..|..+ ..|.++...+.+++++.-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            3488999999987 44556777889999999999999 89999999999999999999998 789999999999999999


Q ss_pred             CCcccc
Q 003200          800 NNNLTG  805 (840)
Q Consensus       800 ~N~l~g  805 (840)
                      .|++..
T Consensus       120 ~~~~~~  125 (326)
T KOG0473|consen  120 KTEFFR  125 (326)
T ss_pred             cCcchH
Confidence            998653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.34  E-value=0.12  Score=27.52  Aligned_cols=13  Identities=31%  Similarity=0.537  Sum_probs=6.0

Q ss_pred             CCCeEeCCCCccc
Q 003200          744 ALQSINFSFNTFT  756 (840)
Q Consensus       744 ~L~~L~Ls~N~l~  756 (840)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666655

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.41  E-value=0.015  Score=55.34  Aligned_cols=89  Identities=19%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             ccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEe
Q 003200          670 KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSIN  749 (840)
Q Consensus       670 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  749 (840)
                      ..+......+.||++.|++- ..-..++-++.+                   ..||++.|.+. ..|.+++.+..+..++
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~-------------------~rl~~sknq~~-~~~~d~~q~~e~~~~~   94 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRL-------------------VRLDLSKNQIK-FLPKDAKQQRETVNAA   94 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHH-------------------HHHhccHhhHh-hChhhHHHHHHHHHHH
Confidence            34555667778888888765 333444444444                   67888888887 6788888888888888


Q ss_pred             CCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200          750 FSFNTFTGRIPESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       750 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                      +..|... ..|.+++..+.++++++-.|.+.
T Consensus        95 ~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   95 SHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hhccchh-hCCccccccCCcchhhhccCcch
Confidence            8888888 78888888888888888888865

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.89  E-value=0.33  Score=29.14  Aligned_cols=19  Identities=42%  Similarity=0.663  Sum_probs=11.9

Q ss_pred             cCCCCeEeCCCCcccccCCc
Q 003200          766 MRALESVDFSVNQLSGEIPQ  785 (840)
Q Consensus       766 l~~L~~L~Ls~N~l~~~~p~  785 (840)
                      +++|++|+|++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            356677777777776 4443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.89  E-value=0.33  Score=29.14  Aligned_cols=19  Identities=42%  Similarity=0.663  Sum_probs=11.9

Q ss_pred             cCCCCeEeCCCCcccccCCc
Q 003200          766 MRALESVDFSVNQLSGEIPQ  785 (840)
Q Consensus       766 l~~L~~L~Ls~N~l~~~~p~  785 (840)
                      +++|++|+|++|+++ .+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCH
Confidence            356677777777776 4443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.00  E-value=0.22  Score=29.22  Aligned_cols=11  Identities=27%  Similarity=0.549  Sum_probs=3.4

Q ss_pred             CCeEeCCCCcc
Q 003200          745 LQSINFSFNTF  755 (840)
Q Consensus       745 L~~L~Ls~N~l  755 (840)
                      |++|+|++|++
T Consensus         4 L~~L~l~~n~i   14 (24)
T PF13516_consen    4 LETLDLSNNQI   14 (24)
T ss_dssp             -SEEE-TSSBE
T ss_pred             CCEEEccCCcC
Confidence            33333333333

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.25  E-value=0.15  Score=29.99  Aligned_cols=18  Identities=39%  Similarity=0.495  Sum_probs=10.0

Q ss_pred             CCCCeEeCCCCcccccCC
Q 003200          767 RALESVDFSVNQLSGEIP  784 (840)
Q Consensus       767 ~~L~~L~Ls~N~l~~~~p  784 (840)
                      ++|++|+|++|++++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            566777777777665433

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.70  E-value=0.69  Score=27.70  Aligned_cols=16  Identities=25%  Similarity=0.472  Sum_probs=11.0

Q ss_pred             CCCCCeEeCCCCcccc
Q 003200          742 LKALQSINFSFNTFTG  757 (840)
Q Consensus       742 l~~L~~L~Ls~N~l~~  757 (840)
                      +++|+.|+|++|+++.
T Consensus         1 L~~L~~L~L~~N~l~~   16 (26)
T smart00370        1 LPNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCCEEECCCCcCCc
Confidence            3567777777777773

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.70  E-value=0.69  Score=27.70  Aligned_cols=16  Identities=25%  Similarity=0.472  Sum_probs=11.0

Q ss_pred             CCCCCeEeCCCCcccc
Q 003200          742 LKALQSINFSFNTFTG  757 (840)
Q Consensus       742 l~~L~~L~Ls~N~l~~  757 (840)
                      +++|+.|+|++|+++.
T Consensus         1 L~~L~~L~L~~N~l~~   16 (26)
T smart00369        1 LPNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCCEEECCCCcCCc
Confidence            3567777777777773

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.23  E-value=0.2  Score=47.02  Aligned_cols=84  Identities=17%  Similarity=0.147  Sum_probs=47.7

Q ss_pred             CCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccc-cccchhhh-cCCCCcEEecccccCccccCcccccCCCCCcEE
Q 003200          236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ-GTISDAIG-NLTSVSWLDLSINIGLQGRIPRSMANFCNLKSV  313 (840)
Q Consensus       236 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L  313 (840)
                      .++.+|-++..|...--+.+.+++.++.|.+.+|.-- .-.-+.++ -.++|+.|++++|..++..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4555666665555444455556666666666665421 11111122 246677777777666666666666677777777


Q ss_pred             EcCCCc
Q 003200          314 NLRGVH  319 (840)
Q Consensus       314 ~l~~~~  319 (840)
                      .+.+-.
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            666544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.00  E-value=0.24  Score=46.57  Aligned_cols=34  Identities=29%  Similarity=0.345  Sum_probs=15.9

Q ss_pred             CCCCEEECcCC-CCCCCCcccccCCCCCcEEEccc
Q 003200          235 TSLKHLDLDSN-HFNSSIPDWLYKFSPLECLNLRN  268 (840)
Q Consensus       235 ~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~  268 (840)
                      ++|+.|++++| +|+..--.++..+++|+.|.+.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            34555555544 23333334445555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	840
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-41
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-41
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-14
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		9e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		4e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		4e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		5e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		5e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		6e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		6e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  168 bits (426), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 191/671 (28%), Positives = 289/671 (43%), Gaps = 85/671 (12%)
Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDW--LYKFSPLECLNLRNNSLQ--GTISDAIGNLTSV 285
           G +   SL  LDL  N  +  +     L   S L+ LN+ +N+L   G +S  +  L S+
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSL 153
Query: 286 SWLDLSIN-IGLQGRIPRSMANFC-NLKSVNLRGVHLSQEIS-------EILDIFSGCVS 336
             LDLS N I     +   +++ C  LK + + G  +S ++        E LD+ S   S
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 213
Query: 337 NG---------LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTL 387
            G         L+ LD+  + + G  +  +     L  LN+++N  VG IP     L +L
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 271
Query: 388 RELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF------QLVALGL 441
           + L + +NK  G + +F       L+   + GN       +  +PPF             
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVPPFFGSCSLLESLALS 326
Query: 442 HNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKI-S 500
            N + G      L   + L+ L+L  +  S   P      ++ L  LD+  N F G I  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 501 NLTKNTQ--LLFLSVNSNNMSGPLPLVSSN---LVYLDFSNNSFSGSISHFLCYRVNETK 555
           NL +N +  L  L + +N  +G +P   SN   LV L  S N  SG+I   L        
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL----GSLS 442
Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
            L  LKL  N L+GEIP   M  + L+ L L  N  +G +P+ L + T+L W+ L  NRL
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDL 675
           +G+IP  +     LA L +  N F GNIP   G+  S ++ L L +N F+G +P  +   
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAM--- 558
Query: 676 AFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV-----VYREILPLVS-------- 722
            F Q   +A N ++G     I N  GM       G++     +  E L  +S        
Sbjct: 559 -FKQSGKIAANFIAGKRYVYIKN-DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616
Query: 723 -------------------LLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI 763
                               LD+S N  SG I  E+ ++  L  +N   N  +G IP+ +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 764 GTMRALESVDFSVNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPLSTQLQSFNASSFAG 823
           G +R L  +D S N+L G IPQ+M                +G IP   Q ++F  + F  
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Query: 824 N-DLCGAPLPK 833
           N  LCG PLP+
Sbjct: 737 NPGLCGYPLPR 747

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 191/671 (28%), Positives = 289/671 (43%), Gaps = 85/671 (12%)
Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDW--LYKFSPLECLNLRNNSLQ--GTISDAIGNLTSV 285
           G +   SL  LDL  N  +  +     L   S L+ LN+ +N+L   G +S  +  L S+
Sbjct: 92  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSL 150
Query: 286 SWLDLSIN-IGLQGRIPRSMANFC-NLKSVNLRGVHLSQEIS-------EILDIFSGCVS 336
             LDLS N I     +   +++ C  LK + + G  +S ++        E LD+ S   S
Sbjct: 151 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 210
Query: 337 NG---------LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTL 387
            G         L+ LD+  + + G  +  +     L  LN+++N  VG IP     L +L
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 268
Query: 388 RELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF------QLVALGL 441
           + L + +NK  G + +F       L+   + GN       +  +PPF             
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVPPFFGSCSLLESLALS 323
Query: 442 HNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKI-S 500
            N + G      L   + L+ L+L  +  S   P      ++ L  LD+  N F G I  
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 501 NLTKNTQ--LLFLSVNSNNMSGPLPLVSSN---LVYLDFSNNSFSGSISHFLCYRVNETK 555
           NL +N +  L  L + +N  +G +P   SN   LV L  S N  SG+I   L        
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL----GSLS 439
Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
            L  LKL  N L+GEIP   M  + L+ L L  N  +G +P+ L + T+L W+ L  NRL
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDL 675
           +G+IP  +     LA L +  N F GNIP   G+  S ++ L L +N F+G +P  +   
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAM--- 555
Query: 676 AFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV-----VYREILPLVS-------- 722
            F Q   +A N ++G     I N  GM       G++     +  E L  +S        
Sbjct: 556 -FKQSGKIAANFIAGKRYVYIKN-DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 613
Query: 723 -------------------LLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI 763
                               LD+S N  SG I  E+ ++  L  +N   N  +G IP+ +
Sbjct: 614 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 764 GTMRALESVDFSVNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPLSTQLQSFNASSFAG 823
           G +R L  +D S N+L G IPQ+M                +G IP   Q ++F  + F  
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Query: 824 N-DLCGAPLPK 833
           N  LCG PLP+
Sbjct: 734 NPGLCGYPLPR 744

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 118/274 (43%), Gaps = 49/274 (17%)
Query: 565 NYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLK 624
           N L G IP        L  L +++   SG +P+ L  I +LV L    N LSG +P S+ 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 625 NCTALASLDVDENEFVGNIPTWFGERFSRMLV-LILRSNQFHGPLPKTICDLAFLQILDL 683
           +   L  +  D N   G IP  +G  FS++   + +  N+  G +P T  +L  L  +DL
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204
Query: 684 ADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLK 743
           + N L G                    SV++         + +++N+ + + L +V   K
Sbjct: 205 SRNMLEG------------------DASVLFGSD-KNTQKIHLAKNSLAFD-LGKVGLSK 244
Query: 744 ALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMXXXXXXXXXXXXXXXX 803
            L  ++   N   G +P+ +  ++ L S++ S N L GEIPQ                  
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------------ 286
Query: 804 TGKIPLSTQLQSFNASSFAGND-LCGAPLPKNCT 836
                    LQ F+ S++A N  LCG+PLP  CT
Sbjct: 287 ------GGNLQRFDVSAYANNKCLCGSPLPA-CT 313

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 147/342 (42%), Gaps = 62/342 (18%)
Query: 190 NLSKASDWLMATNTLPSLLEL-RLSNCS-LHHFPTLASPIPRGLQNLTSLKHLDLDSNHF 247
           NL+K  D LM  N +  +  L  L+N + L  F    + I   L+NLT+L  L+L SN  
Sbjct: 83  NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTI 141
Query: 248 NSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF 307
             S    L   + L+ LN  +N  Q T    + NLT++  LD+S N      +   +A  
Sbjct: 142 --SDISALSGLTSLQQLNFSSN--QVTDLKPLANLTTLERLDISSNKVSDISV---LAKL 194
Query: 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
            NL+S+    +  + +IS+I  +  G ++N L+ L +  + +    T  L    NL  L+
Sbjct: 195 TNLESL----IATNNQISDITPL--GILTN-LDELSLNGNQLKDIGT--LASLTNLTDLD 245
Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVK 427
           LANN I  L P                            + LTKL+  ++G NQ++    
Sbjct: 246 LANNQISNLAP---------------------------LSGLTKLTELKLGANQISN--- 275
Query: 428 HDWIPPF----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSAS 483
              I P      L  L L+   +    P  + + K+L YL L  + ISDI P+  L    
Sbjct: 276 ---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 484 QLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV 525
           +L F     N     +S+L   T + +LS   N +S   PL 
Sbjct: 331 RLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 368

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 126/298 (42%), Gaps = 26/298 (8%)
Query: 339 LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES-FGQLSTLRELQIYDNKL 397
           LE L++  + +            NL TL L +N +  LIP   F  LS L +L I +NK+
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKI 116
Query: 398 NGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQ 457
              L ++ F +L  L    VG N L +     +     L  L L  C + S   + L   
Sbjct: 117 -VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--- 172
Query: 458 KHLQYLNLLNSRISDIFPIR--FLKSASQLKFLDVGLNQFHGKIS-NLTKNTQLLFLSVN 514
            HL  L +L  R  +I  IR    K   +LK L++    +   ++ N      L  LS+ 
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232
Query: 515 SNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDC 574
             N++    L   +LVYL F N S++  IS      ++E   L+ ++L    L    P  
Sbjct: 233 HCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291
Query: 575 WMSYQNLKVLKLSNNKFS----------GNLP------NSLGSITSLVWLYLRKNRLS 616
           +     L+VL +S N+ +          GNL       N L     L+W++ R+ RL+
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLN 349

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 146/342 (42%), Gaps = 63/342 (18%)
Query: 190 NLSKASDWLMATNTLPSLLEL-RLSNCS-LHHFPTLASPIPRGLQNLTSLKHLDLDSNHF 247
           NL+K  D LM  N +  +  L  L+N + L  F    + I   L+NLT+L  L+L SN  
Sbjct: 83  NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTI 141
Query: 248 NSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF 307
             S    L   + L+ LN  N   Q T    + NLT++  LD+S N      +   +A  
Sbjct: 142 --SDISALSGLTSLQQLNFGN---QVTDLKPLANLTTLERLDISSNKVSDISV---LAKL 193
Query: 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
            NL+S+    +  + +IS+I  +  G ++N L+ L +  + +    T  L    NL  L+
Sbjct: 194 TNLESL----IATNNQISDITPL--GILTN-LDELSLNGNQLKDIGT--LASLTNLTDLD 244
Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVK 427
           LANN I  L P                            + LTKL+  ++G NQ++    
Sbjct: 245 LANNQISNLAP---------------------------LSGLTKLTELKLGANQISN--- 274
Query: 428 HDWIPPF----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSAS 483
              I P      L  L L+   +    P  + + K+L YL L  + ISDI P+  L    
Sbjct: 275 ---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ 329
Query: 484 QLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV 525
           +L F     N     +S+L   T + +LS   N +S   PL 
Sbjct: 330 RLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 367

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 209 ELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRN 268
            L L NC    FPTL          L SLK L   SN   ++  +       LE L+L  
Sbjct: 308 HLELVNCKFGQFPTLK---------LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356
Query: 269 N--SLQGTISDAIGNLTSVSWLDLSIN---------IGLQGRIPRSMANFCNLKSVNLRG 317
           N  S +G  S +    TS+ +LDLS N         +GL+ ++        NLK ++   
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFS 415
Query: 318 VHLSQEISEILDI--------FSGCVSNGLESLD---MRSSSIYGH-LTDQLGQFRNLVT 365
           V LS      LDI        F+G + NGL SL+   M  +S   + L D   + RNL  
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 366 LNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
           L+L+   +  L P +F  LS+L+ L +  N+L
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 126/523 (24%), Positives = 196/523 (37%), Gaps = 102/523 (19%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
           S   L+ L+LS  +   +      +LS L  L L+ N +    +   SGLS L+ L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
            NL+   ++ +    L +L EL +++  +  F      +P    NLT+L+HLDL SN   
Sbjct: 110 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSN--- 159
Query: 249 SSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
                   K   + C +LR                 +  + L          P +     
Sbjct: 160 --------KIQSIYCTDLR----------------VLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
             K + L  + L       L++   C+  GL  L++            LG+FRN   L  
Sbjct: 196 AFKEIRLHKLTLRNNFDS-LNVMKTCI-QGLAGLEVHRLV--------LGEFRNEGNLEK 245
Query: 369 ANNS----IVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTF 424
            + S    +  L  E F        L   D  L+  +  F+   LT +S F +    +T 
Sbjct: 246 FDKSALEGLCNLTIEEF-------RLAYLDYYLDDIIDLFNC--LTNVSSFSLVS--VTI 294
Query: 425 EVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIF------PIRF 478
           E   D+   F    L L NC  G +FP      K L+ L   +++  + F       + F
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFG-QFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 479 LK-----------------SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSG- 520
           L                    + LK+LD+  N      SN     QL  L    +N+   
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 521 ---PLPLVSSNLVYLDFSNN----SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE-IP 572
               + L   NL+YLD S+     +F+G          N   SLE LK+  N  Q   +P
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIF--------NGLSSLEVLKMAGNSFQENFLP 463
Query: 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
           D +   +NL  L LS  +     P +  S++SL  L +  N+L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 146/342 (42%), Gaps = 63/342 (18%)
Query: 190 NLSKASDWLMATNTLPSLLEL-RLSNCS-LHHFPTLASPIPRGLQNLTSLKHLDLDSNHF 247
           NL+K  D LM  N +  +  L  L+N + L  F    + I   L+NLT+L  L+L SN  
Sbjct: 83  NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTI 141
Query: 248 NSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF 307
             S    L   + L+ LN  N   Q T    + NLT++  LD+S N      +   +A  
Sbjct: 142 --SDISALSGLTSLQQLNFGN---QVTDLKPLANLTTLERLDISSNKVSDISV---LAKL 193
Query: 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
            NL+S+    +  + +IS+I  +  G ++N L+ L +  + +    T  L    NL  L+
Sbjct: 194 TNLESL----IATNNQISDITPL--GILTN-LDELSLNGNQLKDIGT--LASLTNLTDLD 244
Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVK 427
           LANN I  L P                            + LTKL+  ++G NQ++    
Sbjct: 245 LANNQISNLAP---------------------------LSGLTKLTELKLGANQISN--- 274
Query: 428 HDWIPPF----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSAS 483
              I P      L  L L+   +    P  + + K+L YL L  + ISDI P+  L    
Sbjct: 275 ---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ 329
Query: 484 QLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV 525
           +L F     N     +S+L   T + +LS   N +S   PL 
Sbjct: 330 RLFF----SNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA 367

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 136/318 (42%), Gaps = 53/318 (16%)
Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
           L+NLT L  + +++N      P  L   + L  L L NN  Q T  D + NLT+++ L+L
Sbjct: 81  LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLEL 136
Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY 350
           S N          ++    L S+      LS   +++ D+        LE LD+ S+ + 
Sbjct: 137 SSNT------ISDISALSGLTSLQ----QLSFSSNQVTDLKPLANLTTLERLDISSNKVS 186
Query: 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN--GTL------S 402
                 L +  NL +L   NN I  + P   G L+ L EL +  N+L   GTL      +
Sbjct: 187 D--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLT 242
Query: 403 EFHFAN-----------LTKLSWFRVGGNQLTFEVKHDWIPPF----QLVALGLHNCYVG 447
           +   AN           LTKL+  ++G NQ++       I P      L  L L+   + 
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISN------ISPLAGLTALTNLELNENQLE 296
Query: 448 SRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQ 507
              P  + + K+L YL L  + ISDI P+  L    +L F     N     +S+L   T 
Sbjct: 297 DISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----YNNKVSDVSSLANLTN 350
Query: 508 LLFLSVNSNNMSGPLPLV 525
           + +LS   N +S   PL 
Sbjct: 351 INWLSAGHNQISDLTPLA 368

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 138/321 (42%), Gaps = 60/321 (18%)
Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
           L+NLT L  + +++N      P  L   + L  L L NN  Q T  D + NLT+++ L+L
Sbjct: 85  LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLEL 140
Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEIS---EILDIFSGCVSNGLESLDMRSS 347
           S N               ++ +  L G+   Q++S   ++ D+        LE LD+ S+
Sbjct: 141 SSNT------------ISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 186
Query: 348 SIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN--GTL---- 401
            +       L +  NL +L   NN I  + P   G L+ L EL +  N+L   GTL    
Sbjct: 187 KVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLT 242
Query: 402 --SEFHFAN-----------LTKLSWFRVGGNQLTFEVKHDWIPPF----QLVALGLHNC 444
             ++   AN           LTKL+  ++G NQ++       I P      L  L L+  
Sbjct: 243 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN------ISPLAGLTALTNLELNEN 296
Query: 445 YVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTK 504
            +    P  + + K+L YL L  + ISDI P+  L    +L F     N     +S+L  
Sbjct: 297 QLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----ANNKVSDVSSLAN 350
Query: 505 NTQLLFLSVNSNNMSGPLPLV 525
            T + +LS   N +S   PL 
Sbjct: 351 LTNINWLSAGHNQISDLTPLA 371

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 138/321 (42%), Gaps = 60/321 (18%)
Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
           L+NLT L  + +++N      P  L   + L  L L NN  Q T  D + NLT+++ L+L
Sbjct: 86  LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLEL 141
Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEIS---EILDIFSGCVSNGLESLDMRSS 347
           S N               ++ +  L G+   Q++S   ++ D+        LE LD+ S+
Sbjct: 142 SSNT------------ISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187
Query: 348 SIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN--GTL---- 401
            +       L +  NL +L   NN I  + P   G L+ L EL +  N+L   GTL    
Sbjct: 188 KVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLT 243
Query: 402 --SEFHFAN-----------LTKLSWFRVGGNQLTFEVKHDWIPPF----QLVALGLHNC 444
             ++   AN           LTKL+  ++G NQ++       I P      L  L L+  
Sbjct: 244 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN------ISPLAGLTALTNLELNEN 297
Query: 445 YVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTK 504
            +    P  + + K+L YL L  + ISDI P+  L    +L F     N     +S+L  
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----YNNKVSDVSSLAN 351
Query: 505 NTQLLFLSVNSNNMSGPLPLV 525
            T + +LS   N +S   PL 
Sbjct: 352 LTNINWLSAGHNQISDLTPLA 372

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 136/318 (42%), Gaps = 53/318 (16%)
Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
           L+NLT L  + +++N      P  L   + L  L L NN  Q T  D + NLT+++ L+L
Sbjct: 81  LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN--QITDIDPLKNLTNLNRLEL 136
Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY 350
           S N          ++    L S+      LS   +++ D+        LE LD+ S+ + 
Sbjct: 137 SSNT------ISDISALSGLTSLQ----QLSFSSNQVTDLKPLANLTTLERLDISSNKVS 186
Query: 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN--GTL------S 402
                 L +  NL +L   NN I  + P   G L+ L EL +  N+L   GTL      +
Sbjct: 187 D--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLT 242
Query: 403 EFHFAN-----------LTKLSWFRVGGNQLTFEVKHDWIPPF----QLVALGLHNCYVG 447
           +   AN           LTKL+  ++G NQ++       I P      L  L L+   + 
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISN------ISPLAGLTALTNLELNENQLE 296
Query: 448 SRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQ 507
              P  + + K+L YL L  + ISDI P+  L    +L F     N     +S+L   T 
Sbjct: 297 DISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----SNNKVSDVSSLANLTN 350
Query: 508 LLFLSVNSNNMSGPLPLV 525
           + +LS   N +S   PL 
Sbjct: 351 INWLSAGHNQISDLTPLA 368

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 137/572 (23%), Positives = 209/572 (36%), Gaps = 102/572 (17%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
           S   L+ L+LS  +   +      +LS L  L L+ N +    +   SGLS L+ L    
Sbjct: 74  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
            NL+   ++ +    L +L EL +++  +  F      +P    NLT+L+HLDL SN   
Sbjct: 134 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSN--- 183
Query: 249 SSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
                   K   + C +LR                 +  + L          P +     
Sbjct: 184 --------KIQSIYCTDLR----------------VLHQMPLLNLSLDLSLNPMNFIQPG 219
Query: 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
             K + L  + L       L++   C+  GL  L++            LG+FRN   L  
Sbjct: 220 AFKEIRLHKLTLRNNFDS-LNVMKTCI-QGLAGLEVHRLV--------LGEFRNEGNLEK 269
Query: 369 ANNS----IVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTF 424
            + S    +  L  E F        L   D  L+G +  F+   LT +S F +    +T 
Sbjct: 270 FDKSALEGLCNLTIEEF-------RLAYLDYYLDGIIDLFNC--LTNVSSFSLVS--VTI 318
Query: 425 EVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFP--------- 475
           E   D+   F    L L NC  G +FP      K L+ L   +++  + F          
Sbjct: 319 ERVKDFSYNFGWQHLELVNCKFG-QFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEF 375
Query: 476 -------IRFLKSASQ-------LKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSG- 520
                  + F    SQ       LK+LD+  N      SN     QL  L    +N+   
Sbjct: 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435
Query: 521 ---PLPLVSSNLVYLDFSNN----SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE-IP 572
               + L   NL+YLD S+     +F+G          N   SLE LK+  N  Q   +P
Sbjct: 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIF--------NGLSSLEVLKMAGNSFQENFLP 487
Query: 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632
           D +   +NL  L LS  +     P +  S++SL  L +  N          K   +L  L
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547
Query: 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
           D   N  + +         S +  L L  N F
Sbjct: 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 120/486 (24%), Positives = 203/486 (41%), Gaps = 90/486 (18%)
Query: 233 NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT-ISDAIGNLTSVSWLDLS 291
           +L SL+HLDL  NH +S    W    S L+ LNL  N  Q   ++    NLT++  L + 
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 292 INIGLQGRIPR------SMANFCNLKSVNLRGV------------HLSQEISE---ILDI 330
            N+     I R      +  N   +K+++LR              HL+  +SE   +L+I
Sbjct: 132 -NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190
Query: 331 FSGCVSNGLESLDMRSSSI----YGHL-TDQLGQ------FRNLVTLNLANNSIVGLIPE 379
           F+  +S+ +  L++R +++    +  L  D++        FR  V  + + N ++ L+  
Sbjct: 191 FADILSS-VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL-- 247
Query: 380 SFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVAL 439
               +  L E++  D  LNG L +F+ +    +S     G   T  ++   IP F L   
Sbjct: 248 --RYILELSEVEFDDCTLNG-LGDFNPSESDVVSEL---GKVETVTIRRLHIPQFYLF-- 299
Query: 440 GLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKI 499
                Y  S     L   K    + + NS++  + P  F +    L+FLD+  N     +
Sbjct: 300 -----YDLSTVYSLLEKVKR---ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM---V 347
Query: 500 SNLTKNT---------QLLFLSVN---SNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFL 547
               KN+         Q L LS N   S   +G + L   NL  LD S N+F     H +
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-----HPM 402
Query: 548 CYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNN---KFSGNLPNSLGSITS 604
                  + +  L L+   ++  +  C    Q L+VL +SNN    FS  LP        
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFSLFLPR------- 452
Query: 605 LVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
           L  LY+ +N+L      SL     L  + +  N+ + ++P    +R + +  + L +N +
Sbjct: 453 LQELYISRNKLKTLPDASL--FPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 509
Query: 665 HGPLPK 670
               P+
Sbjct: 510 DCSCPR 515

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 22/204 (10%)
Query: 562 LTDNYLQG----EIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG 617
           LT  YL G    E+P    +  NL+VL LS+N+ + +LP  LGS   L + Y   N ++ 
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306
Query: 618 KIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAF 677
            +P    N   L  L V+ N           E+    L+  LR N+   PLP    +  F
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRF 363
Query: 678 LQI-LDLADNNLSGAIPKCISNLTGMVTVKSFT------------GSVVYREILPLVSLL 724
           ++I  D        ++ +   +L   +  ++FT               +YR         
Sbjct: 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATPKMYRYTPSWALSW 423
Query: 725 DISRNNFSGEILSEVTNLKALQSI 748
           D  RN    +ILS  ++L  LQ +
Sbjct: 424 DYRRNKLKEQILSYDSDLLCLQEV 447

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 203/492 (41%), Gaps = 96/492 (19%)
Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT-ISDAIGNLTSVSWL 288
              +L SL+HLDL  NH +S    W    S L+ LNL  N  Q   ++    NLT++  L
Sbjct: 95  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154
Query: 289 DLSINIGLQGRIPR------SMANFCNLKSVNLRGV------------HLSQEISE---I 327
            +  N+     I R      +  N   +K+++LR              HL+  +SE   +
Sbjct: 155 RIG-NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 213
Query: 328 LDIFSGCVSNGLESLDMRSSSI----YGHL-TDQLGQ------FRNLVTLNLANNSIVGL 376
           L+IF+  +S+ +  L++R +++    +  L  D++        FR  V  + + N ++ L
Sbjct: 214 LEIFADILSS-VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 272
Query: 377 IPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQL 436
           +      +  L E++  D  LNG L +F+ +    +S     G   T  ++   IP F L
Sbjct: 273 L----RYILELSEVEFDDCTLNG-LGDFNPSESDVVSEL---GKVETVTIRRLHIPQFYL 324
Query: 437 VALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
                   Y  S     L   K    + + NS++  + P  F +    L+FLD+  N   
Sbjct: 325 F-------YDLSTVYSLLEKVKR---ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM- 372
Query: 497 GKISNLTKNT---------QLLFLSVN---SNNMSGPLPLVSSNLVYLDFSNNSFSGSIS 544
             +    KN+         Q L LS N   S   +G + L   NL  LD S N+F     
Sbjct: 373 --VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF----- 425
Query: 545 HFLCYRVNETKSLEGLKLTDN---YLQGEIPDCWMSYQNLKVLKLSNN---KFSGNLPNS 598
           H +       + +  L L+      ++  IP      Q L+VL +SNN    FS  LP  
Sbjct: 426 HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNLDSFSLFLPR- 478
Query: 599 LGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLI 658
                 L  LY+ +N+L      SL     L  + +  N+ + ++P    +R + +  + 
Sbjct: 479 ------LQELYISRNKLKTLPDASL--FPVLLVMKIASNQ-LKSVPDGIFDRLTSLQKIW 529
Query: 659 LRSNQFHGPLPK 670
           L +N +    P+
Sbjct: 530 LHTNPWDCSCPR 541

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 135/572 (23%), Positives = 208/572 (36%), Gaps = 102/572 (17%)
Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
           S   L+ L+LS  +   +      +LS L  L L+ N +    +   SGLS L+ L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
            NL+   ++ +    L +L EL +++  +  F      +P    NLT+L+HLDL SN   
Sbjct: 110 TNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSN--- 159
Query: 249 SSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
                   K   + C +LR                 +  + L          P +     
Sbjct: 160 --------KIQSIYCTDLR----------------VLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
             K + L  + L       L++   C+  GL  L++            LG+FRN   L  
Sbjct: 196 AFKEIRLHKLTLRNNFDS-LNVMKTCIQ-GLAGLEVHRLV--------LGEFRNEGNLEK 245
Query: 369 ANNS----IVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTF 424
            + S    +  L  E F        L   D  L+  +  F+   LT +S F +    +T 
Sbjct: 246 FDKSALEGLCNLTIEEF-------RLAYLDYYLDDIIDLFNC--LTNVSSFSLVS--VTI 294
Query: 425 EVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIF------PIRF 478
           E   D+   F    L L NC  G +FP      K L+ L   +++  + F       + F
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFG-QFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 479 LK-----------------SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSG- 520
           L                    + LK+LD+  N      SN     QL  L    +N+   
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 521 ---PLPLVSSNLVYLDFSNN----SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE-IP 572
               + L   NL+YLD S+     +F+G          N   SLE LK+  N  Q   +P
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIF--------NGLSSLEVLKMAGNSFQENFLP 463
Query: 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632
           D +   +NL  L LS  +     P +  S++SL  L +  N          K   +L  L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523
Query: 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
           D   N  + +         S +  L L  N F
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	840
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  556 bits (1434), Expect = 0.0
 Identities = 227/824 (27%), Positives = 351/824 (42%), Gaps = 98/824 (11%)

Query: 30  GCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSN 89
             L  E   L+ FK  L D  N L  W+ + + CT+ GV C +    +  ++L    +S 
Sbjct: 8   QSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDL----SSK 60

Query: 90  PRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPP 149
           P ++    V+ +LL L  L  L LS++   G  +  F     +L  L+LS     G +  
Sbjct: 61  PLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGF-KCSASLTSLDLSRNSLSGPVTT 118

Query: 150 --QLGNLSDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKA-SDWLMATNTLP 205
              LG+ S L+FL++SSN L +   V     L+ LE LDL + ++S A     + ++   
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 206 SLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLN 265
            L  L +S   +         +   +    +L+ LD+ SN+F++ IP +L   S L+ L+
Sbjct: 179 ELKHLAISGNKIS------GDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLD 229

Query: 266 LRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEIS 325
           +  N L G  S AI   T +  L++S N    G IP       +L+ ++L     + EI 
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286

Query: 326 EILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS 385
           + L                             G    L  L+L+ N   G +P  FG  S
Sbjct: 287 DFL----------------------------SGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 386 TLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCY 445
            L  L +  N  +G L       +  L    +  N+ +       +P        L N  
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-----GELPES------LTNL- 366

Query: 446 VGSRFPQWLHSQKHLQYLNLLNSRIS-DIFPIRFLKSASQLKFLDVGLNQFHGKI-SNLT 503
                         L  L+L ++  S  I P       + L+ L +  N F GKI   L+
Sbjct: 367 -----------SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 504 KNTQLLFLSVNSNNMSGPLPLV---SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGL 560
             ++L+ L ++ N +SG +P      S L  L    N   G I   L       K+LE L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM----YVKTLETL 471

Query: 561 KLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIP 620
            L  N L GEIP    +  NL  + LSNN+ +G +P  +G + +L  L L  N  SG IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531

Query: 621 ISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQI 680
             L +C +L  LD++ N F G IP    +         + +N   G     I +    + 
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFIAGKRYVYIKNDGMKKE 586

Query: 681 LDLADN--NLSGAIPKCISNLTGMVTVK----SFTGSV-VYREILPLVSLLDISRNNFSG 733
              A N     G   + ++ L+           + G      +    +  LD+S N  SG
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646

Query: 734 EILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL 793
            I  E+ ++  L  +N   N  +G IP+ +G +R L  +D S N+L G IPQ+MS+LT L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706

Query: 794 NHLNLSNNNLTGKIPLSTQLQSFNASSFAGND-LCGAPLPKNCT 836
             ++LSNNNL+G IP   Q ++F  + F  N  LCG PLP+   
Sbjct: 707 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  277 bits (710), Expect = 2e-82
 Identities = 133/716 (18%), Positives = 239/716 (33%), Gaps = 92/716 (12%)

Query: 108 LSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYL 167
               D S       Q+P  + +  N+  LNL+  Q   +        S L  LD+  N +
Sbjct: 6   HEVADCSHLKLT--QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 168 YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPI 227
                     L  L+ L+L+   LS+ SD         +L EL L + S+          
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTF--AFCTNLTELHLMSNSIQKIK------ 113

Query: 228 PRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIG--NLTSV 285
                   +L  LDL  N  +S+      +   L+ L L NN +Q   S+ +     +S+
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 286 SWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR 345
             L+LS N  ++   P        L  + L  V L   ++E   +     +  + +L + 
Sbjct: 174 KKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE--KLCLELANTSIRNLSLS 230

Query: 346 SSSIYGHLTDQLG--QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSE 403
           +S +           ++ NL  L+L+ N++  +  +SF  L  L    +  N +   L  
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFS 289

Query: 404 FHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYL 463
                L  + +  +  +     +    +P                         K L++L
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKID---------------DFSFQWLKCLEHL 334

Query: 464 NLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLP 523
           N+ ++ I  I           LK+L +  +                  S+ +      + 
Sbjct: 335 NMEDNDIPGIKS-NMFTGLINLKYLSLSNSF----------------TSLRTLTNETFVS 377

Query: 524 LVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLK 582
           L  S L  L+ + N  S   S            LE L L  N +  E+    W   +N+ 
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFS----WLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 583 VLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGN 642
            + LS NK+     NS   + SL  L LR+  L                        V +
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN----------------------VDS 471

Query: 643 IPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGM 702
            P+ F      + +L L +N         +  L  L+ILDL  NNL+    +   +    
Sbjct: 472 SPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA----RLWKHANPG 526

Query: 703 VTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPES 762
             +    G       L  + +L++  N F    +    +L  L+ I+   N         
Sbjct: 527 GPIYFLKG-------LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 763 IGTMRALESVDFSVNQLSGEIPQSMS-SLTFLNHLNLSNNNLTGKIPLSTQLQSFN 817
                +L+S++   N ++    +    +   L  L++  N             ++ 
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  252 bits (646), Expect = 3e-73
 Identities = 116/613 (18%), Positives = 197/613 (32%), Gaps = 59/613 (9%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFL 160
               L  L  L+L  N+   +   +      NL  L+L       +         +L  L
Sbjct: 68  LCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 161 DLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHF 220
           DLS N L    +     L  L+ L L +  +       +      SL +L LS+  +  F
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 221 PTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSP---LECLNLRNNSLQGTISD 277
                  P     +  L  L L++     S+ + L        +  L+L N+ L  T + 
Sbjct: 187 S------PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 278 AIGNL--TSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCV 335
               L  T+++ LDLS N  L      S A    L+   L   ++    S       G  
Sbjct: 241 TFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS---HSLHGLF 296

Query: 336 SNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDN 395
           +  +  L+++               R+    +++  S+  +   SF  L  L  L + DN
Sbjct: 297 N--VRYLNLK---------------RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 396 KLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWI----PPFQLVALGLHNCYVGSRFP 451
            + G +    F  L  L +  +  +  +     +          L  L L    +     
Sbjct: 340 DIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 452 QWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN-LTKNTQLLF 510
                  HL+ L+L  + I      +  +    +  + +  N++     N       L  
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 511 LSVNSNNMSGPLPLVS-----SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDN 565
           L +    +       S      NL  LD SNN+ +      L       + LE L L  N
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE----GLEKLEILDLQHN 514

Query: 566 YLQ--------GEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG 617
            L         G          +L +L L +N F          +  L  + L  N L+ 
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 618 KIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAF 677
                  N  +L SL++ +N         FG  F  +  L +R N F            F
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI---AWF 631

Query: 678 LQILDLADNNLSG 690
           +  ++    N+  
Sbjct: 632 VNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  237 bits (606), Expect = 1e-67
 Identities = 125/602 (20%), Positives = 221/602 (36%), Gaps = 56/602 (9%)

Query: 235 TSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINI 294
            S +  D       + +PD L   + +  LNL +N L+   +      + ++ LD+  N 
Sbjct: 4   VSHEVADCSHLKL-TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN- 59

Query: 295 GLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLT 354
            +    P        LK +NL+   LSQ        F+ C +  L  L + S+SI     
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSD---KTFAFCTN--LTELHLMSNSIQKIKN 114

Query: 355 DQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSE-FHFANLTKLS 413
           +   + +NL+TL+L++N +      +  QL  L+EL + +NK+    SE       + L 
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 414 WFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWL---HSQKHLQYLNLLNSRI 470
              +  NQ+       +    +L  L L+N  +G    + L    +   ++ L+L NS++
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 471 SDIFPIRFLK-SASQLKFLDVGLNQFHGKISN-LTKNTQLLFLSVNSNNMSGPLPLV--- 525
           S      FL    + L  LD+  N  +   ++      QL +  +  NN+          
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 526 SSNLVYLDFSNNSFSGSISHFLCYRVNE-----TKSLEGLKLTDNYLQGEIPDCWMSYQN 580
             N+ YL+   +    SIS     ++++      K LE L + DN + G   + +    N
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 581 LKVLKLSNNKFSGNLPNSLG----SITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDE 636
           LK L LSN+  S     +      + + L  L L KN++S     +      L  LD+  
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 637 NEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG--AIPK 694
           NE    +          +  + L  N++      +   +  LQ L L    L    + P 
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 695 CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFN- 753
               L  +                     LD+S NN +      +  L+ L+ ++   N 
Sbjct: 475 PFQPLRNLTI-------------------LDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 754 -------TFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGK 806
                     G     +  +  L  ++   N       +    L  L  ++L  NNL   
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 807 IP 808
             
Sbjct: 576 PA 577

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  195 bits (499), Expect = 3e-53
 Identities = 83/528 (15%), Positives = 177/528 (33%), Gaps = 69/528 (13%)

Query: 307 FCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTL 366
             + +  +   + L+Q   ++           +  L++  + +         ++  L +L
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLP--------TNITVLNLTHNQLRRLPAANFTRYSQLTSL 54

Query: 367 NLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEV 426
           ++  N+I  L PE   +L  L+ L +  N+L+  LS+  FA  T L+   +  N +    
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQ--- 110

Query: 427 KHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLK 486
                         +               QK+L  L+L ++ +S    +        L+
Sbjct: 111 -------------KIK--------NNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQ 148

Query: 487 FLDVGLNQFHGKISN---LTKNTQLLFLSVNSNNMSGPLPLV---SSNLVYLDFSNNSFS 540
            L +  N+     S    +  N+ L  L ++SN +    P        L  L  +N    
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 541 GSISHFLCYRVNETKSLEGLKLTDNYLQGEIPD--CWMSYQNLKVLKLSNNKFSGNLPNS 598
            S++  LC  +    S+  L L+++ L          + + NL +L LS N  +    +S
Sbjct: 209 PSLTEKLCLELA-NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 599 LGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLI 658
              +  L + +L  N +      SL     +  L++  +                     
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS----------------FTKQS 311

Query: 659 LRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV---------KSFT 709
           +           +   L  L+ L++ DN++ G      + L  +  +         ++ T
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 710 GSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIP-ESIGTMRA 768
                      + +L++++N  S       + L  L+ ++   N     +  +    +  
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 769 LESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSF 816
           +  +  S N+       S + +  L  L L    L       +  Q  
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  237 bits (606), Expect = 2e-68
 Identities = 117/574 (20%), Positives = 193/574 (33%), Gaps = 59/574 (10%)

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY 166
               LDLS N  + +       S   L+ L+LS  +   +      +LS L  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 167 LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASP 226
           +    +   SGLS L+ L     NL+   ++ +    L +L EL +++  +  F      
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFK----- 140

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLEC----LNLRNNSLQGTISDAIGNL 282
           +P    NLT+L+HLDL SN   S     L     +      L+L  N +      A   +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 283 TSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEI---SEILDIFSGCVSNGL 339
             +  L L  N      +   +     L+   L       E            G  +  +
Sbjct: 201 -RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 340 ESLDMRS-SSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN 398
           E   +         + D      N+ + +L + +I  +   S+      + L++ + K  
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFG 317

Query: 399 GTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQK 458
                    +L +L++    G     EV                                
Sbjct: 318 Q-FPTLKLKSLKRLTFTSNKGGNAFSEV-----------------------------DLP 347

Query: 459 HLQYLNLLNSRISDIFPIRF-LKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNN 517
            L++L+L  + +S            + LK+LD+  N      SN     QL  L    +N
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 518 MSGPLPLVS----SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEI-P 572
           +             NL+YLD S+     + +           SLE LK+  N  Q    P
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----LSSLEVLKMAGNSFQENFLP 463

Query: 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632
           D +   +NL  L LS  +     P +  S++SL  L +  N          K   +L  L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHG 666
           D   N  + +         S +  L L  N F  
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  233 bits (597), Expect = 3e-67
 Identities = 111/614 (18%), Positives = 197/614 (32%), Gaps = 87/614 (14%)

Query: 205 PSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECL 264
            S   L LS   L H             +   L+ LDL      +         S L  L
Sbjct: 28  FSTKNLDLSFNPLRHLG------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81

Query: 265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEI 324
            L  N +Q     A   L+S+  L       L       + +   LK +N+    +    
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS-- 138

Query: 325 SEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNL----VTLNLANNSIVGLIPES 380
            ++ + FS   +  LE LD+ S+ I       L     +    ++L+L+ N +  + P +
Sbjct: 139 FKLPEYFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 381 FGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALG 440
           F ++  L +L + +N  +  + +     L  L   R+   +   E   +      L   G
Sbjct: 197 FKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL--EG 253

Query: 441 LHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKIS 500
           L N  +          +  L YL+     I D+F        + +    +        + 
Sbjct: 254 LCNLTI---------EEFRLAYLDYYLDDIIDLF-----NCLTNVSSFSLVSVTIER-VK 298

Query: 501 NLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGL 560
           + + N     L + +        L   +L  L F++N    + S           SLE L
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL------PSLEFL 352

Query: 561 KLTDNYLQ--GEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK 618
            L+ N L   G          +LK L LS N     + ++   +  L  L  + + L   
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 619 IPIS-LKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAF 677
              S   +   L  LD                         +               L+ 
Sbjct: 412 SEFSVFLSLRNLIYLD-------------------------ISHTHTRVAFNGIFNGLSS 446

Query: 678 LQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS 737
           L++L +A N+        I                     L  ++ LD+S+        +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTE------------------LRNLTFLDLSQCQLEQLSPT 488

Query: 738 EVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL-TFLNHL 796
              +L +LQ +N S N F          + +L+ +D+S+N +     Q +    + L  L
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 797 NLSNNNLTGKIPLS 810
           NL+ N+        
Sbjct: 549 NLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  180 bits (460), Expect = 2e-48
 Identities = 90/544 (16%), Positives = 165/544 (30%), Gaps = 76/544 (13%)

Query: 94  LVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGN 153
           L    N  +  LK L  L+++ N  Q  ++P +  ++ NL +L+LS  +   +    L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 154 LSDLQF----LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLE 209
           L  +      LDLS N +          +  L  L LR+ N    +        L  L  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRN-NFDSLNVMKTCIQGLAGLEV 229

Query: 210 LRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSS---IPDWLYKFSPLECLNL 266
            RL      +   L       L+ L +L   +    + +     I D     + +   +L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 267 RNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISE 326
            + +++     +         L+L                F  LK  +L+ +  +     
Sbjct: 290 VSVTIERVKDFS--YNFGWQHLELVNC---------KFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 327 ILDIFSGCVSNGLESLDMRSSSIY--GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQL 384
                    S  LE LD+  + +   G  +       +L  L+L+ N ++  +  +F  L
Sbjct: 339 NAFSEVDLPS--LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 385 STLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNC 444
             L  L    + L        F +L  L +  +                           
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA------------------- 436

Query: 445 YVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTK 504
                F    +    L+ L +  +   + F          L FLD+   Q          
Sbjct: 437 -----FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 505 NTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTD 564
           +                     S+L  L+ S+N+F    +           SL+ L  + 
Sbjct: 492 SL--------------------SSLQVLNMSHNNFFSLDTFPY----KCLNSLQVLDYSL 527

Query: 565 NYLQGEIPDCWMS-YQNLKVLKLSNNKFSGNLPNS--LGSITSLVWLYLRKNRLSGKIPI 621
           N++             +L  L L+ N F+    +   L  I     L +   R+    P 
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

Query: 622 SLKN 625
             + 
Sbjct: 588 DKQG 591

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (299), Expect = 5e-28
 Identities = 47/325 (14%), Positives = 92/325 (28%), Gaps = 40/325 (12%)

Query: 526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLK 585
             +   LD S N      S+           L+ L L+   +Q      + S  +L  L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 586 LSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPT 645
           L+ N        +   ++SL  L   +  L+      + +   L  L+V  N        
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 646 WFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQI----LDLADNNLSGAIPKCISNLTG 701
            +    + +  L L SN+        +  L  + +    LDL+ N ++   P     +  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR- 201

Query: 702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRI- 759
                              +  L +  N  S  ++      L  L+        F     
Sbjct: 202 -------------------LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 760 --PESIGTMRALESVDFSVNQLS------GEIPQSMSSLTFLNHLNLSNNNLTGKIPLS- 810
                   +  L ++     +L+       +I    + LT ++  +L +  +      S 
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 811 -TQLQSFNASSFAGNDLCGAPLPKN 834
               Q     +          L   
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSL 327

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  232 bits (594), Expect = 2e-66
 Identities = 99/716 (13%), Positives = 199/716 (27%), Gaps = 160/716 (22%)

Query: 50  SNRLASWTGDGDCCTWA---GVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLK 106
           +   A+W  + +   W    GV+  +  G +  L+L             G+V  A+  L 
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEG-------FGASGRVPDAIGQLT 105

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY 166
            L  L L S+  +  +       +             +      +       F DL    
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI--- 162

Query: 167 LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASP 226
                              + S    K         ++     + L +  +       + 
Sbjct: 163 ----------------KDCINSDPQQK---------SIKKSSRITLKDTQIGQLSNNITF 197

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
           + + +  LT L+   + ++ F +            E  N        T      NL  ++
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRS 346
            +++  N     ++P  +     ++ +N+                     N   S +   
Sbjct: 253 DVEVY-NCPNLTKLPTFLKALPEMQLINVA-------------------CNRGISGEQLK 292

Query: 347 SSIYGHLTDQLGQFRNLVTLNLANNSIVGL-IPESFGQLSTLRELQIYDNKLNGTLSEFH 405
                           +  + +  N++    +  S  ++  L  L+   N+L G L    
Sbjct: 293 DD--WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-- 348

Query: 406 FANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNL 465
           F +  KL+   +  NQ+T       IP                    +    + ++ L+ 
Sbjct: 349 FGSEIKLASLNLAYNQITE------IP------------------ANFCGFTEQVENLSF 384

Query: 466 LNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV 525
            ++++  I  I   KS S +  +D   N+                          P P  
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP-------------LDPTPFK 431

Query: 526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG-------EIPDCWMSY 578
             N+  ++ SNN  S           +    L  + L  N L         +  + + + 
Sbjct: 432 GINVSSINLSNNQISKFPKELF----STGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 579 QNLKVLKLSNNKFSGNLPN-SLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN 637
             L  + L  NK +    +    ++  LV + L  N  S   P    N + L    +   
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

Query: 638 EFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCIS 697
                                 + N+     P+ I     L  L +  N++   + +   
Sbjct: 547 -------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE--- 583

Query: 698 NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFN 753
                             +I P +S+LDI  N      LS V            ++
Sbjct: 584 ------------------KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  221 bits (564), Expect = 3e-62
 Identities = 82/580 (14%), Positives = 171/580 (29%), Gaps = 74/580 (12%)

Query: 261 LECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHL 320
           +  L+L      G + DAIG LT +  L L  +                  S   +    
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 321 SQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES 380
                  +D       + L    + S      +            +   +N+I   + ++
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201

Query: 381 FGQLSTLRELQIYDNKLNGT-----LSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQ 435
             +L+ LR+  + ++              +     +     +  + L             
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-----------D 250

Query: 436 LVALGLHNCYVGSRFPQWLHSQKHLQYLNL-------LNSRISDIFPIRFLKSASQLKFL 488
           L  + ++NC   ++ P +L +   +Q +N+             D   +       +++ +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 489 DVGLNQFHG-----KISNLTKNTQLLFLSVNSNNMSGPLPLVS--SNLVYLDFSNNSFSG 541
            +G N          +  + K   L  L    N + G LP       L  L+ + N  + 
Sbjct: 311 YIGYNNLKTFPVETSLQKMKK---LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE 367

Query: 542 SISHFLCYRVNETKSLEGLKLTDNYLQGEIPD--CWMSYQNLKVLKLSNNKFSG------ 593
             ++F       T+ +E L    N L+  IP+     S   +  +  S N+         
Sbjct: 368 IPANFC----GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 594 -NLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG-------NIPT 645
             L  +     ++  + L  N++S          + L+S+++  N           +   
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 646 WFGERFSRMLVLILRSNQFHG-PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVT 704
            F      +  + LR N+            L +L  +DL+ N+ S   P    N + +  
Sbjct: 483 NFK-NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL-- 538

Query: 705 VKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG 764
                      +   + +  D   N    E    +T   +L  +    N     + E I 
Sbjct: 539 -----------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI- 585

Query: 765 TMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
               +  +D   N         +          L  +   
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  160 bits (406), Expect = 3e-41
 Identities = 70/548 (12%), Positives = 160/548 (29%), Gaps = 98/548 (17%)

Query: 94  LVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGN 153
               +  +       + +   SN+     + + +  +  LR   + ++ FV     +   
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 154 LSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKA-SDWLMATNTLPSLLELRL 212
                  +      Y         L  L  +++ +         +L     LP +  + +
Sbjct: 229 N-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL---KALPEMQLINV 280

Query: 213 SNCSLHHFPTLAS--PIPRGLQNLTSLKHLDLDSNHFNS-SIPDWLYKFSPLECLNLRNN 269
           +         L               ++ + +  N+  +  +   L K   L  L    N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 270 SLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEIL 328
            L+G +  A G+   ++ L+L+ N  +   IP +   F       +  +  +  ++  I 
Sbjct: 341 QLEGKL-PAFGSEIKLASLNLAYN-QITE-IPANFCGFTE----QVENLSFAHNKLKYIP 393

Query: 329 DIFSGCVSNGLESLDMR-------SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESF 381
           +IF     + + ++D             +  L     +  N+ ++NL+NN I     E F
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 382 GQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGL 441
              S L  + +  N L                                 IP   L     
Sbjct: 454 STGSPLSSINLMGNMLTE-------------------------------IPKNSL----- 477

Query: 442 HNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN 501
                     +   +   L  ++L  ++++ +       +   L  +D+  N F    + 
Sbjct: 478 ------KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531

Query: 502 LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLK 561
              ++ L    + +                 D   N         +        SL  L+
Sbjct: 532 PLNSSTLKGFGIRNQ---------------RDAQGNRTLREWPEGIT----LCPSLTQLQ 572

Query: 562 LTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPI 621
           +  N ++  + +      N+ VL + +N       + +          L  ++       
Sbjct: 573 IGSNDIRK-VNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ----- 624

Query: 622 SLKNCTAL 629
            ++ C AL
Sbjct: 625 DIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  104 bits (262), Expect = 3e-23
 Identities = 31/228 (13%), Positives = 72/228 (31%), Gaps = 14/228 (6%)

Query: 598 SLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVL 657
           SL S   +  L L     SG++P ++   T L  L +  +    N   +  +  S  +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 658 ILRSNQFHGPLPKTICDLAFLQILDLADNNLS-----GAIPKCISNLTGMVTVKSFTGSV 712
             +           +         DL  + ++      +I K          +   + ++
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 713 VY--REILPLVSL--LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRA 768
            +  + ++ L  L    +  + F  E + E    +     N  +             ++ 
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE-----NSEYAQQYKTEDLKWDNLKD 250

Query: 769 LESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSF 816
           L  V+        ++P  + +L  +  +N++ N       L    Q+ 
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 4/87 (4%)

Query: 724 LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEI 783
           L+    +  G       N     + N   + +  +   S+ +   +  +       SG +
Sbjct: 42  LNGKNWSQQGFGTQPGANW----NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV 97

Query: 784 PQSMSSLTFLNHLNLSNNNLTGKIPLS 810
           P ++  LT L  L L ++       L 
Sbjct: 98  PDAIGQLTELEVLALGSHGEKVNERLF 124

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  222 bits (568), Expect = 3e-66
 Identities = 82/316 (25%), Positives = 130/316 (41%), Gaps = 56/316 (17%)

Query: 526 SSNLVYLDFSNNSFSGS--ISHFLCYRVNETKSLEGLKLTD-NYLQGEIPDCWMSYQNLK 582
           +  +  LD S  +      I   L         L  L +   N L G IP        L 
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLA----NLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 583 VLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGN 642
            L +++   SG +P+ L  I +LV L    N LSG +P S+ +   L  +          
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT--------- 155

Query: 643 IPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFL-QILDLADNNLSGAIPKCISNLTG 701
                              N+  G +P +    + L   + ++ N L+G IP   +NL  
Sbjct: 156 ----------------FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198

Query: 702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPE 761
                              ++ +D+SRN   G+      + K  Q I+ + N+    +  
Sbjct: 199 -------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG- 238

Query: 762 SIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSF 821
            +G  + L  +D   N++ G +PQ ++ L FL+ LN+S NNL G+IP    LQ F+ S++
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

Query: 822 AGND-LCGAPLPKNCT 836
           A N  LCG+PLP  CT
Sbjct: 299 ANNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  176 bits (449), Expect = 1e-49
 Identities = 92/390 (23%), Positives = 146/390 (37%), Gaps = 102/390 (26%)

Query: 31  CLETERRALLRFKQDLQDPSNRLASWTGDGDCC--TWAGVACGNVT--GHILELNLRNPS 86
           C   +++ALL+ K+DL +P+  L+SW    DCC  TW GV C   T    +  L+L   +
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 87  TSNPRSMLVGKVNPALLDLKHLSYLDLSS-NDFQGVQIPRFIGSMRNLRYLNLSDTQFVG 145
                      +  +L +L +L++L +   N+  G  IP  I  +  L YL ++ T   G
Sbjct: 62  LP-----KPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSG 115

Query: 146 MIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLP 205
            IP  L  +  L  LD S N         LSG                         TLP
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNA--------LSG-------------------------TLP 142

Query: 206 SLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL-ECL 264
                 +S+                     +L  +  D N  + +IPD    FS L   +
Sbjct: 143 P----SISSLP-------------------NLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEI 324
            +  N L G I     NL +++++DLS N  L+G       +  N + ++L    L+ ++
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 325 SEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQL 384
            +                              +G  +NL  L+L NN I G +P+   QL
Sbjct: 238 GK------------------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 385 STLRELQIYDNKLNGTL-SEFHFANLTKLS 413
             L  L +  N L G +    +       +
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  121 bits (307), Expect = 1e-30
 Identities = 62/327 (18%), Positives = 119/327 (36%), Gaps = 66/327 (20%)

Query: 227 IPRGLQNLTSL----KHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT--ISDAIG 280
           I + L N T+L       D  +  +   + D   +   +  L+L   +L     I  ++ 
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 281 NLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLE 340
           NL  +++L +     L G IP ++A    L  + +   ++S                   
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS------------------- 114

Query: 341 SLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGT 400
                     G + D L Q + LVTL+ + N++ G +P S   L  L  +    N+++G 
Sbjct: 115 ----------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 401 LSEFHFANLTKLSWF-RVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKH 459
           + +  + + +KL     +  N+LT +     IPP         N               +
Sbjct: 165 IPD-SYGSFSKLFTSMTISRNRLTGK-----IPP------TFANL--------------N 198

Query: 460 LQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMS 519
           L +++L  + +          S    + + +  N     +  +  +  L  L + +N + 
Sbjct: 199 LAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 520 GPLPLV---SSNLVYLDFSNNSFSGSI 543
           G LP        L  L+ S N+  G I
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 85.7 bits (213), Expect = 3e-18
 Identities = 45/179 (25%), Positives = 68/179 (37%), Gaps = 13/179 (7%)

Query: 93  MLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNL-RYLNLSDTQFVGMIPPQL 151
            L G + P++  L +L  +    N   G  IP   GS   L   + +S  +  G IPP  
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 152 GNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELR 211
            NL+ L F+DLS N L  D           + + L   +L+     L       +L  L 
Sbjct: 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD---LGKVGLSKNLNGLD 250

Query: 212 LSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS 270
           L N  ++        +P+GL  L  L  L++  N+    IP         +     NN 
Sbjct: 251 LRNNRIY------GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 2e-15
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 724 LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR--IPESIGTMRALESVDFS-VNQLS 780
            D     + G +    T    + +++ S         IP S+  +  L  +    +N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 781 GEIPQSMSSLTFLNHLNLSNNNLTGKIPLS----TQLQSFNASS 820
           G IP +++ LT L++L +++ N++G IP        L + + S 
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 8e-08
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 14/106 (13%)

Query: 734 EILSEVTNLKALQS----INFSFNTFTGRIPESIGTMRALESVDFSVNQLSGE--IPQSM 787
           +I  ++ N   L S     +    T+ G + ++      + ++D S   L     IP S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 788 SSLTFLNHLNLSN-NNLTGKIPLS----TQLQSFNASSFAGNDLCG 828
           ++L +LN L +   NNL G IP +    TQL     +     ++ G
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT---HTNVSG 115

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  207 bits (529), Expect = 9e-58
 Identities = 100/597 (16%), Positives = 182/597 (30%), Gaps = 78/597 (13%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSS 164
                 L+ S N    +Q       + NL +L+L+  Q   +      +   L  L L++
Sbjct: 32  PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 165 NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLA 224
           N L       LSG   L+HL      +S                                
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGIS-------------------------------- 118

Query: 225 SPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTS 284
           S     L N  +L+ L L SNH +S      +    L+ L+ +NN++     + + +L  
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 285 VSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM 344
            + L L++N      I     +    +S+N  G   +Q +  I           L     
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG---TQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 345 RSSSIYG--HLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLS 402
                        +     ++ ++NL  +    +   +F   S L+EL +    L+   S
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS 295

Query: 403 EFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQY 462
                 L+ L    +  N+         +                            L +
Sbjct: 296 GLV--GLSTLKKLVLSANKFEN------LCQISASNF------------------PSLTH 329

Query: 463 LNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN---LTKNTQLLFLSVNSNNMS 519
           L++  +          L++   L+ LD+  +           L   + L  L+++ N   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 520 GPLPLV---SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM 576
                       L  LD +        +            L+ L L+ + L       + 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 577 SYQNLKVLKLSNNKFSGN---LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633
               L+ L L  N F        NSL ++  L  L L    LS     +  +   +  +D
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG 690
           +  N    +          + + L L SN     LP  +  L+  + ++L  N L  
Sbjct: 507 LSHNRLTSSSIEALSH--LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  205 bits (523), Expect = 6e-57
 Identities = 104/579 (17%), Positives = 200/579 (34%), Gaps = 43/579 (7%)

Query: 238 KHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQ 297
           K  + ++    + IP  L   +  ECL    N L    +     L ++++LDL+    + 
Sbjct: 15  KTYNCENLGL-NEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIY 70

Query: 298 GRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQL 357
                +  +   L ++ L    L           SG  +  L+ L    + I       L
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETA---LSGPKA--LKHLFFIQTGISSIDFIPL 125

Query: 358 GQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSW--F 415
              + L +L L +N I  +          L+ L   +N ++  LS+   ++L + +    
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSL 184

Query: 416 RVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQK--HLQYLNLLNSRISDI 473
            + GN +   ++          +L            + L +     L      +    DI
Sbjct: 185 NLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 474 FPIRFLK-SASQLKFLDVGLNQFHGKISNLTKN-TQLLFLSVNSNNMSGPLPLVS--SNL 529
            P  F       ++ +++  + F    SN     + L  L + + ++S     +   S L
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTL 303

Query: 530 VYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSY-QNLKVLKLSN 588
             L  S N F            +   SL  L +  N  + E+    +   +NL+ L LS+
Sbjct: 304 KKLVLSANKFENLCQISA----SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 589 NK--FSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTW 646
           +    S      L +++ L  L L  N        + K C  L  LD+            
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 647 FGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK 706
             +    + VL L  +       +    L  LQ L+L  N+      +  ++L       
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT----- 474

Query: 707 SFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTM 766
                      L  + +L +S  + S       T+LK +  ++ S N  T    E++  +
Sbjct: 475 -----------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523

Query: 767 RALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG 805
           + +  ++ + N +S  +P  +  L+    +NL  N L  
Sbjct: 524 KGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  202 bits (516), Expect = 6e-56
 Identities = 106/603 (17%), Positives = 194/603 (32%), Gaps = 60/603 (9%)

Query: 99  NPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQ 158
           N     L +L++LDL+      +       S   L  L L+    + M    L     L+
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 159 FLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLH 218
            L      +   +   L     LE L L S ++S              L  L   N ++H
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP--KGFPTEKLKVLDFQNNAIH 166

Query: 219 HFPTLASPIPRGLQNLTSLKHLDLDSNH-FNSSIPDWLYKFSPLECLNLRNNSLQGTISD 277
           +           + +L    +L L+ N    + I    +  +  + LN         I  
Sbjct: 167 YLS------KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 278 AIGN--LTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEIL-DIFSG 333
            + N  + S+       ++  +   P      C +   ++  ++L +     I  + F  
Sbjct: 221 GLKNSTIQSLWLGTFE-DMDDEDISPAVFEGLCEM---SVESINLQKHYFFNISSNTFHC 276

Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393
                L+ LD+ ++ +   L   L     L  L L+ N    L   S     +L  L I 
Sbjct: 277 FSG--LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 394 DNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQW 453
            N     L      NL  L    +  + +                               
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIET----------------------SDCCNLQ 371

Query: 454 LHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN--LTKNTQLLFL 511
           L +  HLQ LNL  +    +    F K   QL+ LD+   +   K +         L  L
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 512 SVNSNNMSGPLPLV---SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQ 568
           +++ + +      +      L +L+   N F                 LE L L+   L 
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-LGRLEILVLSFCDLS 489

Query: 569 GEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTA 628
                 + S + +  + LS+N+ + +   +L  +  +  L L  N +S  +P  L   + 
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQ 548

Query: 629 LASLDVDENEFVGNIP-TWFGERFSRMLVLILRSNQFHGPLPKTIC-DLAFLQILDLADN 686
             ++++ +N         +F       L     + Q       T+C +   L+ + L+D 
Sbjct: 549 QRTINLRQNPLDCTCSNIYF-------LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDV 601

Query: 687 NLS 689
            LS
Sbjct: 602 TLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  183 bits (467), Expect = 2e-49
 Identities = 91/519 (17%), Positives = 168/519 (32%), Gaps = 31/519 (5%)

Query: 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
              K+ N   + L++          G + N  E L+   + +         +  NL  L+
Sbjct: 12  EVNKTYNCENLGLNE--------IPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLD 63

Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVK 427
           L    I  +  ++F     L  L +  N L   ++E   +    L         ++    
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDF 122

Query: 428 HDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFP--IRFLKSASQL 485
                   L +L L + ++ S         + L+ L+  N+ I  +    +  L+  +  
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATN 181

Query: 486 KFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSN-----LVYLDFSNNSFS 540
             L++  N   G       +     L+         +     N     L    F +    
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 541 GSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLG 600
                          S+E + L  +Y      + +  +  L+ L L+    S  LP+ L 
Sbjct: 242 DISPAVF--EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298

Query: 601 SITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR 660
            +++L  L L  N+      IS  N  +L  L +  N     + T   E    +  L L 
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 661 SNQFH--GPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK----SFTGSVVY 714
            +           + +L+ LQ L+L+ N       +       +  +             
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 715 REILPLVSL--LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGT---MRAL 769
                L  L  L++S +            L ALQ +N   N F     +   +   +  L
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478

Query: 770 ESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP 808
           E +  S   LS     + +SL  +NH++LS+N LT    
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  140 bits (354), Expect = 9e-35
 Identities = 82/462 (17%), Positives = 145/462 (31%), Gaps = 83/462 (17%)

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419
             +   L  + N +  +   +F +L  L  L +   ++   + E  F +  +L    +  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 420 NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFL 479
           N L F  +     P  L  L      + S     LH+QK L+ L L ++ IS I   +  
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 480 KSASQLKFLDVGLNQFHGKISNL---TKNTQLLFLSVNSNNMSG--PLPLVSSNLVYLDF 534
            +   LK LD   N  H          +    L L++N N+++G  P    S+    L+F
Sbjct: 151 PTEK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 535 SNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDC--WMSYQNLKVLKLSNNKFS 592
                   I   L    +  +SL      D   +   P     +   +++ + L  + F 
Sbjct: 210 GGTQNLLVIFKGLKN--STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 593 GNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFS 652
               N+    + L  L L    LS                                    
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSE----------------------------------- 292

Query: 653 RMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV 712
                          LP  +  L+ L+ L L+ N          SN   +          
Sbjct: 293 ---------------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH-------- 329

Query: 713 VYREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFN--TFTGRIPESIGTMRAL 769
                      L I  N    E+ +    NL+ L+ ++ S +    +      +  +  L
Sbjct: 330 -----------LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 770 ESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLST 811
           +S++ S N+      ++      L  L+L+   L  K   S 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (338), Expect = 8e-33
 Identities = 77/461 (16%), Positives = 151/461 (32%), Gaps = 98/461 (21%)

Query: 96  GKVNPALLDLKHLSYLDLSSNDFQGVQIPRF----IGSMRNLRYLNLSDTQFVGMIPPQL 151
             + P   D      L+        V         I S+    + ++ D      +   L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 152 GNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELR 211
             +S ++ ++L  +Y +  +       S L+ LDL + +LS+                  
Sbjct: 252 CEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE------------------ 292

Query: 212 LSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSL 271
                          +P GL  L++LK L L +N F +        F  L  L+++ N+ 
Sbjct: 293 ---------------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 272 QGTI-SDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDI 330
           +  + +  + NL ++  LDLS                                       
Sbjct: 338 RLELGTGCLENLENLRELDLS--------------------------------------- 358

Query: 331 FSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL 390
                 + +E+ D  +  +            +L +LNL+ N  + L  E+F +   L  L
Sbjct: 359 -----HDDIETSDCCNLQLRN--------LSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 391 QIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNC---YVG 447
            +   +L    ++  F NL  L    +  + L    +  +     L  L L         
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 448 SRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQ 507
            +    L +   L+ L L    +S I       S   +  +D+  N+          + +
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 508 LLFLSVNSNNMSGPLPLV---SSNLVYLDFSNNSFSGSISH 545
            ++L++ SN++S  LP +    S    ++   N    + S+
Sbjct: 525 GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (304), Expect = 1e-28
 Identities = 58/323 (17%), Positives = 97/323 (30%), Gaps = 17/323 (5%)

Query: 500 SNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLE 558
             L  +T+ L  S N              NL +LD +                     L+
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ----SQHRLD 84

Query: 559 GLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK 618
            L LT N L           + LK L       S      L +  +L  LYL  N +S  
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 619 IPISLKNCTALASLDVDENEFVGNIPTWFGE-RFSRMLVLILRSNQFHGPLPKTICDLAF 677
                     L  LD   N             + +  L L L  N   G +     D A 
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAV 203

Query: 678 LQILDLADNNLSGAIPKCISNLT---------GMVTVKSFTGSVVYREILPLVSLLDISR 728
            Q L+         I K + N T           +  +  + +V        V  +++ +
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 729 NNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS 788
           + F     +       LQ ++ +    +  +P  +  +  L+ +  S N+       S S
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 789 SLTFLNHLNLSNNNLTGKIPLST 811
           +   L HL++  N    ++    
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.7 bits (192), Expect = 7e-15
 Identities = 44/247 (17%), Positives = 68/247 (27%), Gaps = 49/247 (19%)

Query: 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG 641
           K     N   +  +P +L +  S   L    N L      +      L  LD        
Sbjct: 15  KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLD-------- 63

Query: 642 NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG 701
                            L   Q +     T      L  L L  N L       +S    
Sbjct: 64  -----------------LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPE 761
           +                     L   +   S      + N K L+S+    N  +     
Sbjct: 107 LKH-------------------LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 762 SIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNH--LNLSNNNLTGKIPLSTQLQSFNAS 819
                  L+ +DF  N +     + MSSL    +  LNL+ N++ G  P +     F + 
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 820 SFAGNDL 826
           +F G   
Sbjct: 208 NFGGTQN 214

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 76  HILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRY 135
            +  LNL+     N       +   +L  L  L  L LS  D   +       S++ + +
Sbjct: 450 ALQHLNLQG----NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNH 504

Query: 136 LNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLS 192
           ++LS  +        L +L  +  L+L+SN++ +     L  LS    ++LR   L 
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  205 bits (523), Expect = 5e-57
 Identities = 101/586 (17%), Positives = 184/586 (31%), Gaps = 64/586 (10%)

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY 166
               +DLS N  + ++      +   L++L+LS  +   +       L  L  L L+ N 
Sbjct: 33  STKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 167 LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASP 226
           +   +    SGL+ LE+L      L+    + +    L +L +L +++  +H        
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPI--GQLITLKKLNVAHNFIHSC-----K 144

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLEC----LNLRNNSLQGTISDAIGNL 282
           +P    NLT+L H+DL  N+  +   + L            L++  N +   I D     
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG 203

Query: 283 TSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISE---ILDIFSGCVSNGL 339
             +  L L  N      +   + N   L    L       E +       I  G     +
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNG 399
           +   +  ++ +     +     N+  ++LA  SI  L  E   +    + L I   +L  
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLK- 320

Query: 400 TLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKH 459
              +F   +L  L    +  N+ +                 L +                
Sbjct: 321 ---QFPTLDLPFLKSLTLTMNKGSI------SFKKV----ALPS---------------- 351

Query: 460 LQYLNLLNSRISDIFPIRF-LKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNM 518
           L YL+L  + +S      +     + L+ LD+  N      +N     +L  L    + +
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL 411

Query: 519 SGPLPLVS----SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDC 574
                  +      L+YLD S  +                 SL  LK+  N  +      
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG----LTSLNTLKMAGNSFKDNTLSN 467

Query: 575 WMSY-QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633
             +   NL  L LS  +          ++  L  L +  N L            +L++LD
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

Query: 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQ 679
              N                +    L +N         IC+     
Sbjct: 528 CSFNRIET-SKGILQHFPKSLAFFNLTNNSVA-----CICEHQKFL 567

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  189 bits (481), Expect = 3e-51
 Identities = 101/610 (16%), Positives = 191/610 (31%), Gaps = 69/610 (11%)

Query: 96  GKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLS 155
           G +NP +  + +++            ++P  I S  + + ++LS      +      N S
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS--KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 156 DLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSK-ASDWLMATNTLPSLLELRLSN 214
           +LQ+LDLS   +         GL  L +L L    +   +       + L SL  L    
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF---SGLTSLENLVAVE 113

Query: 215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS-SIPDWLYKFSPLECLNLRNNSLQG 273
             L             +  L +LK L++  N  +S  +P +    + L  ++L  N +Q 
Sbjct: 114 TKLASLE------SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 274 TISDAIGNLTSVSWLDLSINIGL--QGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIF 331
              + +  L     ++LS+++ L     I         L  + LRG   S  I +     
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK--TCL 225

Query: 332 SGCVSNGLESLDMRSSSIYGHLTD-QLGQFRNLV-----TLNLANNSIVGLIPESFGQLS 385
                  +  L +       +L   +      L         L   +        F  L+
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 386 TLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCY 445
            +  + +    +              LS   +   QL         P   L         
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLS---IIRCQLKQ------FPTLDL--------- 327

Query: 446 VGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKN 505
                         L+ L L  ++ S  F    L S   L +LD+  N           +
Sbjct: 328 ------------PFLKSLTLTMNKGSISFKKVALPS---LSYLDLSRNALSFSGCCSYSD 372

Query: 506 ---TQLLFLSVNSNNMSGPLPLVS--SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGL 560
                L  L ++ N              L +LDF +++                + L  L
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE---FSAFLSLEKLLYL 429

Query: 561 KLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP-NSLGSITSLVWLYLRKNRLSGKI 619
            ++    + +    ++   +L  LK++ N F  N   N   + T+L +L L K +L    
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489

Query: 620 PISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQ 679
                    L  L++  N  +    + + +    +  L    N+              L 
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ-LYSLSTLDCSFNRIETSKGILQHFPKSLA 548

Query: 680 ILDLADNNLS 689
             +L +N+++
Sbjct: 549 FFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  187 bits (478), Expect = 7e-51
 Identities = 97/607 (15%), Positives = 178/607 (29%), Gaps = 87/607 (14%)

Query: 205 PSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECL 264
            S   + LS   L               N + L+ LDL      +      +    L  L
Sbjct: 32  SSTKNIDLSFNPLKILK------SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85

Query: 265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEI 324
            L  N +Q     +   LTS+  L       L       +     LK +N+    +    
Sbjct: 86  ILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHS-- 142

Query: 325 SEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNL----VTLNLANNSIVGLIPES 380
            ++   FS   +  L  +D+  + I     + L   R      ++L+++ N I  +  ++
Sbjct: 143 CKLPAYFSNLTN--LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

Query: 381 FGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALG 440
           F  +  L EL +  N  +  + +    NL  L   R+   +   E   +   P  +   G
Sbjct: 201 FQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM--EG 257

Query: 441 LHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKIS 500
           L +                +    L  +       ++F    + +  + +        + 
Sbjct: 258 LCDV--------------TIDEFRLTYTNDFSDDIVKF-HCLANVSAMSLAGVSIK-YLE 301

Query: 501 NLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGL 560
           ++ K+ +   LS+    +     L    L  L  + N  S S             SL  L
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL------PSLSYL 355

Query: 561 KLTDNYLQGEIPDC--WMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK 618
            L+ N L          +   +L+ L LS N     +  +   +  L  L  + + L   
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414

Query: 619 IPIS-LKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAF 677
              S   +   L  LD                         +               L  
Sbjct: 415 TEFSAFLSLEKLLYLD-------------------------ISYTNTKIDFDGIFLGLTS 449

Query: 678 LQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS 737
           L  L +A N+        +                        ++ LD+S+         
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFAN------------------TTNLTFLDLSKCQLEQISWG 491

Query: 738 EVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLN 797
               L  LQ +N S N            + +L ++D S N++             L   N
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 798 LSNNNLT 804
           L+NN++ 
Sbjct: 552 LTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  175 bits (447), Expect = 8e-47
 Identities = 104/607 (17%), Positives = 190/607 (31%), Gaps = 90/607 (14%)

Query: 238 KHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQ 297
                      S +PD +   S  + ++L  N L+   S +  N + + WLDLS    ++
Sbjct: 14  ITYQCMDQKL-SKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIE 69

Query: 298 GRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQL 357
               ++   +  L                            L +L +  + I        
Sbjct: 70  TIEDKA---WHGLHH--------------------------LSNLILTGNPIQSFSPGSF 100

Query: 358 GQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRV 417
               +L  L      +  L     GQL TL++L +  N ++      +F+NLT L    +
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 418 GGNQLTFEVKHDWIP----PFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDI 473
             N +     +D       P   ++L +    +     Q     K L  L L  +  S  
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSN 219

Query: 474 FPIRFLKSASQLKFLDVGLNQFHG--KISNLTKNT-------QLLFLSVNSNNMSGPLPL 524
                L++ + L    + L +F     +     +         +    +   N      +
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279

Query: 525 V---SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNL 581
                +N+  +  +  S          +        + L +    L+ + P   +    L
Sbjct: 280 KFHCLANVSAMSLAGVSIKYLEDVPKHF------KWQSLSIIRCQLK-QFPTLDLP--FL 330

Query: 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKN--CTALASLDVDENEF 639
           K L L+ NK S  +     ++ SL +L L +N LS     S  +    +L  LD+  N  
Sbjct: 331 KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 640 VGNIPTWFGERFSRMLVLILRSNQFHG-PLPKTICDLAFLQILDLADNNLSGAIPKCISN 698
           +  +   F      +  L  + +             L  L  LD++  N           
Sbjct: 389 II-MSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTFTG 757
           LT + T                   L ++ N+F    LS V  N   L  ++ S      
Sbjct: 447 LTSLNT-------------------LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 758 RIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP----LSTQL 813
                  T+  L+ ++ S N L        + L  L+ L+ S N +             L
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547

Query: 814 QSFNASS 820
             FN ++
Sbjct: 548 AFFNLTN 554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  199 bits (507), Expect = 2e-53
 Identities = 87/667 (13%), Positives = 193/667 (28%), Gaps = 104/667 (15%)

Query: 34  TERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSM 93
            + +AL    + L   + R  S T +                    ++  N + +    M
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINN------------------TIHSLNWNFNKELDM 310

Query: 94  LVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGN 153
              +    L +   ++ L L+    +G  +P  IG +  L+ L+                
Sbjct: 311 WGDQPGVDLDNNGRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 154 LSDLQFLDLSSNYLYVD-NVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRL 212
                  +   + + +     +L     L   DL    +++  +       +     + L
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE----MKPIKKDSRISL 425

Query: 213 SNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS-------------------SIPD 253
            +  + +     + I + +Q LT L+ +   ++ F                     +   
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485

Query: 254 WLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN--------IGLQGRIPRSMA 305
                  L  + L N      + D + +L  +  L+++ N             R+     
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 306 NFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVT 365
               ++   +   +L +  +         V   L  LD   + +  HL    G    L  
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASAS--LQKMVK--LGLLDCVHNKV-RHLEA-FGTNVKLTD 599

Query: 366 LNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFE 425
           L L  N I  +  +       +  L    NKL    + F+  ++  +       N++   
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS- 658

Query: 426 VKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQL 485
                       ++  +                +   + L  + I    P     + S +
Sbjct: 659 -----EGRNISCSMDDYKG-------------INASTVTLSYNEIQKF-PTELFATGSPI 699

Query: 486 KFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISH 545
             + +  N     ++++ +N+         N            L  +D   N  +     
Sbjct: 700 STIILSNNL----MTSIPENSLKPKDGNYKNT---------YLLTTIDLRFNKLTSLSDD 746

Query: 546 FLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKL------SNNKFSGNLPNSL 599
           F          L  + ++ N      P   ++   LK   +        N+     P  +
Sbjct: 747 FRA---TTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 600 GSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF-VGNIPTWFGERFSRMLVLI 658
            +  SL+ L +  N +  K+   L     L  LD+ +N     ++ +      + M VL+
Sbjct: 803 TTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

Query: 659 LRSNQFH 665
               Q  
Sbjct: 860 YDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  190 bits (483), Expect = 2e-50
 Identities = 100/739 (13%), Positives = 196/739 (26%), Gaps = 188/739 (25%)

Query: 114 SSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVW 173
              D  G Q    + +   +  L+L+     G +P  +G L++L+ L   ++        
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-------- 357

Query: 174 WLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQN 233
                           + + +          P + E R     +H+            Q 
Sbjct: 358 ----------------SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY----DQR 397

Query: 234 LTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ-GTISDAIGNLTSVSWLDLSI 292
           L     L    N      P        L+   + N + +   IS AI  LT +  +  + 
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 293 NIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGH 352
           +                           + +   +            E  +   +  Y +
Sbjct: 458 S-------------------------PFTYDNIAVD----------WEDANSDYAKQYEN 482

Query: 353 LTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
                   ++L  + L N   +  +P+    L  L+ L I  N+          A+ T+L
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK--ADWTRL 540

Query: 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472
                                                      +   +Q   +  + + +
Sbjct: 541 --------------------------------------ADDEDTGPKIQIFYMGYNNLEE 562

Query: 473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYL 532
                 L+   +L  LD   N+    +     N                       L  L
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNV---------------------KLTDL 600

Query: 533 DFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW--MSYQNLKVLKLSNNK 590
               N     I    C     T  +EGL  + N L+  IP+ +   S   +  +  S NK
Sbjct: 601 KLDYNQIE-EIPEDFC---AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK 655

Query: 591 FSGNLPNSLGSI-----TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPT 645
                 N   S+      +   + L  N +           + ++++ +  N    +IP 
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIP- 713

Query: 646 WFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV 705
                                P      +   L  +DL  N L+  +       T     
Sbjct: 714 ----------------ENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATT----- 751

Query: 706 KSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSIN------FSFNTFTGRI 759
                       LP +S +D+S N FS    ++  N   L++           N    + 
Sbjct: 752 ------------LPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 760 PESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT-GKIPLSTQLQSFNA 818
           P  I T  +L  +    N +  ++ + +     L  L++++N      +           
Sbjct: 799 PTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 819 SSFAGNDLCGAPLPKNCTM 837
                +        + C  
Sbjct: 856 YVLLYDKT---QDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  169 bits (429), Expect = 2e-43
 Identities = 90/647 (13%), Positives = 180/647 (27%), Gaps = 90/647 (13%)

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAI 279
               A  I          + LD  +  + S   +           N   +         +
Sbjct: 261 LKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDL 319

Query: 280 GNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGL 339
            N   V+ L L+   G +GR+P ++     LK ++      +           G      
Sbjct: 320 DNNGRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF-----GDEELTP 373

Query: 340 ESLDMRSSSIYGHLT-DQLGQFRNLVTLNLANNSIVG---LIPESFGQLSTLRELQIYDN 395
           +  + R   I  H     L   + L   +L  ++I     + P       +L++ QI + 
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 396 KLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLH 455
               T        LTKL       +  T++                              
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPFTYD-----NIAVDWEDANSDYAKQYENEELSWS 488

Query: 456 SQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNS 515
           + K L  + L N       P  FL    +L+ L++  N+           T+L       
Sbjct: 489 NLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 516 NNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW 575
                        +       N+               + SL+ +               
Sbjct: 548 -----------PKIQIFYMGYNNLEE---------FPASASLQKMV-------------- 573

Query: 576 MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISL-KNCTALASLDV 634
                L +L   +NK       + G+   L  L L  N++   IP         +  L  
Sbjct: 574 ----KLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGF 626

Query: 635 DENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAF-----LQILDLADNNLS 689
             N+       +  +    M  +    N+         C +          + L+ N + 
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 690 GAIPKCISNLTGMV----------TVKSFTGSVVYREILPLVSL--LDISRNNFSGEILS 737
               +  +  + +           ++   +             L  +D+  N  +     
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 738 -EVTNLKALQSINFSFNTFTGRIPESIGTMRALES------VDFSVNQLSGEIPQSMSSL 790
              T L  L +++ S+N F+   P        L++       D   N++  + P  +++ 
Sbjct: 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805

Query: 791 TFLNHLNLSNNNLTGKIP--LSTQLQSFNASSFAGNDLCGAPLPKNC 835
             L  L + +N++  K+   L+ QL   + +    N      +   C
Sbjct: 806 PSLIQLQIGSNDIR-KVDEKLTPQLYILDIA---DNPNISIDVTSVC 848

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  179 bits (455), Expect = 7e-47
 Identities = 132/615 (21%), Positives = 216/615 (35%), Gaps = 83/615 (13%)

Query: 104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQFLDL 162
            L     L LS N  + V    F   +  L+ L L        I  +   NL +L+ LDL
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 163 SSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPT 222
            S+ +Y  +     GL  L  L L    LS A         L +L  L LS   +     
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-- 138

Query: 223 LASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFS--PLECLNLRNNSLQGTISDAIG 280
               +      L SLK +D  SN         L       L   +L  NSL   +S   G
Sbjct: 139 ---YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 281 NL------TSVSWLDLSIN-----------IGLQGRIPRSMANFCNLKSVNLRGVHLSQE 323
                     +  LD+S N             +      S+    ++        ++  +
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-D 254

Query: 324 ISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ 383
             +  + F+G   + +  LD+    ++   +      ++L  LNLA N I  +  E+F  
Sbjct: 255 PDQ--NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312

Query: 384 LSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHN 443
           L  L+ L +  N L   L   +F  L K+++  +  N +                     
Sbjct: 313 LDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAII------------------ 353

Query: 444 CYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLT 503
                   Q     + LQ L+L ++ ++ I  I  +        + +  N+    +  + 
Sbjct: 354 ------QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD------IFLSGNKLV-TLPKIN 400

Query: 504 KNTQLLFLSVN--SNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLK 561
               L+ LS N   N       L   +L  L  + N FS           +E  SLE L 
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP---SENPSLEQLF 457

Query: 562 LTDNYLQGEI-----PDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
           L +N LQ         D +    +L+VL L++N  +   P     +T+L  L L  NRL+
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLA 676
                 L     L  LD+  N     +     + F  + VL +  N+F        C+L+
Sbjct: 518 VLSHNDLP--ANLEILDISRN----QLLAPNPDVFVSLSVLDITHNKFI-----CECELS 566

Query: 677 -FLQILDLADNNLSG 690
            F+  L+  +  ++G
Sbjct: 567 TFINWLNHTNVTIAG 581

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  145 bits (368), Expect = 5e-36
 Identities = 117/626 (18%), Positives = 215/626 (34%), Gaps = 77/626 (12%)

Query: 212 LSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSL 271
              C+L   P          Q L + + L L  N+  +           L+ L L +   
Sbjct: 11  YRFCNLTQVP----------QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 272 QGTI-SDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDI 330
             TI  +A  NL ++  LDL  +  +    P +     +L  + L    LS  + +    
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-DGY 118

Query: 331 FSGCVSNGLESLDMRSSSIYG-HLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS--TL 387
           F    +  L  LD+  + I   +L    G+  +L +++ ++N I  +       L   TL
Sbjct: 119 FRNLKA--LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 388 RELQIYDNKLN-----GTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLH 442
               +  N L            +      L    V GN  T ++             G  
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI------------TGNF 224

Query: 443 NCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSA-SQLKFLDVGLNQFHGKISN 501
           +  +       L    H+         I D     F   A S ++ LD+        +++
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNS 283

Query: 502 LT--KNTQLLFLSVNSNNMSGPLPLVS----SNLVYLDFSNNSFSGSISHFLCYRVNETK 555
                   L  L++  N ++  +   +     NL  L+ S N      S           
Sbjct: 284 RVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNF----YGLP 338

Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
            +  + L  N++       +   + L+ L L +N  +     ++  I S+  ++L  N+L
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393

Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC-D 674
                I+L        + + EN        +F  R   + +LIL  N+F          +
Sbjct: 394 VTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 675 LAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE 734
              L+ L L +N L  A    +           F G       L  + +L ++ N  +  
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCW-------DVFEG-------LSHLQVLYLNHNYLNSL 495

Query: 735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLN 794
                ++L AL+ ++ + N  T  +  +      LE +D S NQL    P    SL+   
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVFVSLS--- 550

Query: 795 HLNLSNNNLTGKIPLSTQLQSFNASS 820
            L++++N    +  LST +   N ++
Sbjct: 551 VLDITHNKFICECELSTFINWLNHTN 576

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  129 bits (326), Expect = 6e-31
 Identities = 83/468 (17%), Positives = 155/468 (33%), Gaps = 62/468 (13%)

Query: 97  KVNPALLDLKHLSYLDLSSNDFQGVQIPRFIG-SMRNLRYLNLSDTQFVGMIPPQLGNLS 155
            ++P+   L  L  +D SSN    V          + L + +L+       +    G   
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 156 D------LQFLDLSSNYLYVD------------NVWWLSGLSFLEHLDLRSVNLSKASDW 197
           +      L+ LD+S N   VD              + L     +        N+      
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 198 LMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYK 257
             A     S+  L LS+  +    +         + L  LK L+L  N  N    +  Y 
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRV------FETLKDLKVLNLAYNKINKIADEAFYG 312

Query: 258 FSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRG 317
              L+ LNL  N L    S     L  V+++DL  N  +     ++      L++++LR 
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRD 371

Query: 318 VHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLI 377
             L+                 +  + +  + +       L        ++L+ N +  L 
Sbjct: 372 NALTTI----------HFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLD 417

Query: 378 PESF-GQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQL 436
              F  ++  L+ L +  N+ +    +   +    L    +G N L    + + +     
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE-LCWDVF 476

Query: 437 VALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
             L                   HLQ L L ++ ++ + P       + L+ L +  N+  
Sbjct: 477 EGL------------------SHLQVLYLNHNYLNSL-PPGVFSHLTALRGLSLNSNRLT 517

Query: 497 GKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSIS 544
             +S+      L  L ++ N +  P P V  +L  LD ++N F     
Sbjct: 518 -VLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  113 bits (285), Expect = 6e-26
 Identities = 65/380 (17%), Positives = 128/380 (33%), Gaps = 29/380 (7%)

Query: 103 LDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDL 162
           L    + +LDLS      +   R   ++++L+ LNL+  +   +       L +LQ L+L
Sbjct: 263 LARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 163 SSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPT 222
           S N L         GL  + ++DL+  +++   D       L  L  L L + +L     
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ--TFKFLEKLQTLDLRDNALTTIH- 378

Query: 223 LASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG-TISDAIGN 281
                      + S+  + L  N   +     L        ++L  N L+   I   +  
Sbjct: 379 ----------FIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLR 424

Query: 282 LTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEIL--DIFSGCVSNGL 339
           +  +  L L+ N        ++ +   +L+ + L    L       L  D+F G     L
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH--L 482

Query: 340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNG 399
           + L +  + +             L  L+L +N +  L        + L  L I  N+L  
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL- 539

Query: 400 TLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKH 459
             +   F +L+      +  N+   E +      +               +  +  S   
Sbjct: 540 APNPDVFVSLSV---LDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSG 596

Query: 460 LQYLNLLNSRISDIFPIRFL 479
           +   +L      +   ++ L
Sbjct: 597 VSLFSLSTEGCDEEEVLKSL 616

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  111 bits (279), Expect = 3e-25
 Identities = 70/358 (19%), Positives = 119/358 (33%), Gaps = 36/358 (10%)

Query: 71  GNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSM 130
           GN     +  N  N  + +    L+   +         +  D   N F G+         
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA-------R 265

Query: 131 RNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVN 190
            ++R+L+LS      +       L DL+ L+L+ N +         GL  L+ L+L    
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 191 LSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSS 250
           L +          LP +  + L    +           +  + L  L+ LDL  N   + 
Sbjct: 326 LGELYSS--NFYGLPKVAYIDLQKNHIAIIQ------DQTFKFLEKLQTLDLRDNALTT- 376

Query: 251 IPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNL 310
               ++    +  + L  N L       +    + + + LS N      I   +    +L
Sbjct: 377 ----IHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHL 428

Query: 311 KSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGH-----LTDQLGQFRNLVT 365
           + + L     S    +     S   S  LE L +  + +          D      +L  
Sbjct: 429 QILILNQNRFSSCSGD--QTPSENPS--LEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 366 LNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
           L L +N +  L P  F  L+ LR L +  N+L         ANL  L    +  NQL 
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILD---ISRNQLL 539

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  158 bits (401), Expect = 4e-41
 Identities = 104/524 (19%), Positives = 187/524 (35%), Gaps = 56/524 (10%)

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY 166
            +  LDLS N    +     + +  NL+ L L  ++   +      +L  L+ LDLS N+
Sbjct: 27  AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 167 LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASP 226
           L   +  W   LS L++L+L            +  N L +L  LR+ N       T +  
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQTLRIGNV-----ETFSEI 139

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
                  LTSL  L++ +    +     L     +  L L  +     +      L+SV 
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 287 WLDLSIN--IGLQGRIPRSMANFCNLKSVNLRGVHLS----QEISEILDI--------FS 332
           +L+L        Q            +K +  RG  L+     E+ ++L          F 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 333 GCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQI 392
            C  NGL   +   S +   L     +   +  L++    +   +   +  L  ++ + +
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 393 YDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQ 452
            ++K+   +      +L  L +  +  N +  E   +                       
Sbjct: 318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP--------------- 361

Query: 453 WLHSQKHLQYLNLLNSRISDIFPI-RFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFL 511
                  LQ L L  + +  +      L +   L  LD+  N FH    +     ++ FL
Sbjct: 362 ------SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415

Query: 512 SVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEI 571
           +++S  +      +   L  LD SNN+   S S FL         L+ L ++ N L+  +
Sbjct: 416 NLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFL-------PRLQELYISRNKLK-TL 466

Query: 572 PDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
           PD  +    L V+K+S N+           +TSL  ++L  N  
Sbjct: 467 PDASLF-PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  127 bits (322), Expect = 4e-31
 Identities = 104/605 (17%), Positives = 193/605 (31%), Gaps = 106/605 (17%)

Query: 205 PSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECL 264
            +       + S          IP GL    ++K LDL  N         L   + L+ L
Sbjct: 5   DASGVCDGRSRSFTS-------IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVL 55

Query: 265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEI 324
            L+++ +     DA  +L S+  LDLS N  L   +  S   F  L   +L+ ++L    
Sbjct: 56  ILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS-SLSSSW--FGPLS--SLKYLNLM--- 106

Query: 325 SEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLA-NNSIVGLIPESFGQ 383
                       N  ++L + S               NL TL +    +   +    F  
Sbjct: 107 -----------GNPYQTLGVTSL---------FPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 384 LSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHN 443
           L++L EL+I    L          ++  +    +  ++  F ++        +  L L +
Sbjct: 147 LTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 444 CYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLT 503
             +       L   +    +  L  R                   D   N+    +  + 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRG--------------SVLTDESFNELLKLLRYIL 251

Query: 504 KNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLT 563
           + +++ F     N +              DF+ +               ET ++  L + 
Sbjct: 252 ELSEVEFDDCTLNGL-------------GDFNPSESD----VVSELGKVETVTIRRLHIP 294

Query: 564 DNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKI---P 620
             YL  ++   +   + +K + + N+K      +    + SL +L L +N +  +     
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 621 ISLKNCTALASLDVDENEF--VGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFL 678
                  +L +L + +N    +             +  L +  N FH P+P +      +
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEIL-LTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412

Query: 679 QILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSE 738
           + L+L+   +                       VV   I   + +LD+S NN      S 
Sbjct: 413 RFLNLSSTGI----------------------RVVKTCIPQTLEVLDVSNNNLD----SF 446

Query: 739 VTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNL 798
              L  LQ +  S N     +P++      L  +  S NQL          LT L  + L
Sbjct: 447 SLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

Query: 799 SNNNL 803
             N  
Sbjct: 505 HTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (295), Expect = 1e-27
 Identities = 87/493 (17%), Positives = 166/493 (33%), Gaps = 54/493 (10%)

Query: 335 VSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD 394
           ++  ++SLD+  + I       L    NL  L L ++ I  +  ++F  L +L  L + D
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 395 NKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPP-FQLVALGLHNCYVGSRFP-Q 452
           N L+ +LS   F  L+ L +  + GN           P    L  L + N    S     
Sbjct: 84  NHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 453 WLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN-LTKNTQLLFL 511
                  L  L +    + +       KS   +  L + L++    +       + + +L
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 512 SVNSNNMSG------PLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDN 565
            +   N++       P+  VSS +  L F  +  +    + L   +     L  ++  D 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 566 YLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKN 625
            L G             +   + ++             ++  L++ +  L   +      
Sbjct: 262 TLNG-------------LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 626 CTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQF---HGPLPKTICDLAFLQILD 682
              +  + V+ ++    +P  F +    +  L L  N     +            LQ L 
Sbjct: 309 LEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 683 LADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNL 742
           L+ N+L  ++ K    L  +  + S                LDISRN F   +       
Sbjct: 368 LSQNHLR-SMQKTGEILLTLKNLTS----------------LDISRNTFH-PMPDSCQWP 409

Query: 743 KALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNN 802
           + ++ +N S       +   I   + LE +D S N L       +  L     L +S N 
Sbjct: 410 EKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNK 462

Query: 803 LTGKIPLSTQLQS 815
           L   +P ++    
Sbjct: 463 LK-TLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  106 bits (267), Expect = 4e-24
 Identities = 56/413 (13%), Positives = 134/413 (32%), Gaps = 31/413 (7%)

Query: 98  VNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDL 157
           V     +L +L  L + + +            + +L  L +            L ++ D+
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 158 QFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL------R 211
             L L  +        +   LS + +L+LR  NL++     +  + + S ++        
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 212 LSNCSLHHFPTLASPIPR----GLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLR 267
           L++ S +    L   I         + T     D + +  +        +   +  L++ 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 268 NNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEI 327
              L   +S     L  V  + +  +  +         +  +L+ ++L    + +E  + 
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 328 LDIFSGCVSNGLESLDMRSSSIY--GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS 385
                   S  L++L +  + +       + L   +NL +L+++ N+    +P+S     
Sbjct: 354 SACKGAWPS--LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPE 410

Query: 386 TLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF--QLVALGLHN 443
            +R L +        +          L    V  N L           F  +L  L +  
Sbjct: 411 KMRFLNLSSTG----IRVVKTCIPQTLEVLDVSNNNLDS------FSLFLPRLQELYISR 460

Query: 444 CYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
             +    P        L  + +  +++  + P       + L+ + +  N + 
Sbjct: 461 NKL-KTLPDASLFPV-LLVMKISRNQLKSV-PDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.7 bits (189), Expect = 1e-14
 Identities = 43/366 (11%), Positives = 115/366 (31%), Gaps = 35/366 (9%)

Query: 459 HLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHG-KISNLTKNTQLLFLSVNSNN 517
            ++ L+L  ++I+ I     L++ + L+ L +  ++ +  +         L  L ++ N+
Sbjct: 27  AMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 518 MSGPLPLV---SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDC 574
           +S          S+L YL+   N +    +  +        +L+ L++ +     EI   
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQ---TLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 575 WMSY-QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633
             +   +L  L++           SL SI  +  L L  +  +  + I     +++  L+
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIP 693
           + +                    +   + +      ++  +L  L    L  + +     
Sbjct: 203 LRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE---- 257

Query: 694 KCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFN 753
                                 +   L  L D + +               ++ ++    
Sbjct: 258 ---------------------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 754 TFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQL 813
                +      +  ++ +    +++          L  L  L+LS N +  +   ++  
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 814 QSFNAS 819
           +    S
Sbjct: 357 KGAWPS 362

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 42/152 (27%)

Query: 97  KVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSD 156
            +  +    + + +L+LSS   + V         + L  L++S+             L  
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVV----KTCIPQTLEVLDVSNNNL-DSFSL---FLPR 452

Query: 157 LQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCS 216
           LQ L +S N L       L   S                         P LL +++S   
Sbjct: 453 LQELYISRNKLKT-----LPDASL-----------------------FPVLLVMKISRNQ 484

Query: 217 LHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
           L   P            LTSL+ + L +N ++
Sbjct: 485 LKSVP------DGIFDRLTSLQKIWLHTNPWD 510

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  158 bits (401), Expect = 5e-41
 Identities = 111/562 (19%), Positives = 194/562 (34%), Gaps = 45/562 (8%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
           P +  + +++Y      +F   +IP  +    + + L+LS      +      +  +LQ 
Sbjct: 2   PCVEVVPNITY-QCMELNFY--KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSK-ASDWLMATNTLPSLLELRLSNCSLH 218
           LDLS   +          LS L  L L    +   A       + L SL +L     +L 
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF---SGLSSLQKLVAVETNLA 113

Query: 219 HFPTLASPIPRGLQNLTSLKHLDLDSNHFNS-SIPDWLYKFSPLECLNLRNNSLQGTISD 277
                       + +L +LK L++  N   S  +P++    + LE L+L +N +Q     
Sbjct: 114 SLENFP------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 278 AIGNLTSVSWLDLSINIGLQ--GRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCV 335
            +  L  +  L+LS+++ L     I         L  + LR    S  + +      G  
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK--TCIQGLA 225

Query: 336 SNGLESLDMRSSSIYGHLTD-QLGQFRNLVTLNLANNSIVGL------IPESFGQLSTLR 388
              +  L +      G+L          L  L +    +  L      I + F  L+ + 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 389 ELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGS 448
              +    +       +      L        Q         +    L  L   +   G+
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGN 339

Query: 449 RFPQWLHSQKHLQYLNLLNSRISDI-FPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQ 507
            F         L++L+L  + +S      +     + LK+LD+  N      SN     Q
Sbjct: 340 AFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 508 LLFLSVNSNNMSGPLPLVS----SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLT 563
           L  L    +N+             NL+YLD S+     + +       N   SLE LK+ 
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMA 453

Query: 564 DNYLQGEI-PDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPIS 622
            N  Q    PD +   +NL  L LS  +     P +  S++SL  L +  N+L       
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 623 LKNCTALASLDVDENEFVGNIP 644
               T+L  + +  N +  + P
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (377), Expect = 6e-38
 Identities = 100/569 (17%), Positives = 182/569 (31%), Gaps = 85/569 (14%)

Query: 132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNL 191
               LN         IP  L      + LDLS N L     +       L+ LDL     
Sbjct: 13  QCMELNFYK------IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL----- 59

Query: 192 SKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSI 251
                                S C +              Q+L+ L  L L  N   S  
Sbjct: 60  ---------------------SRCEIQTIE------DGAYQSLSHLSTLILTGNPIQSLA 92

Query: 252 PDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLK 311
                  S L+ L     +L    +  IG+L ++  L+++ N+    ++P   +N  NL+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 312 SVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANN 371
            ++L                     N ++S+      +   +          ++L+L+ N
Sbjct: 153 HLDLSS-------------------NKIQSIYCTDLRVLHQMP------LLNLSLDLSLN 187

Query: 372 SIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWI 431
            +  + P +F ++  L +L + +N  +  + +     L  L   R+   +   E   +  
Sbjct: 188 PMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 432 PPFQLVALGLHNC---------YVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSA 482
               L  L              Y         +   ++   +L++  I  +    +    
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 483 SQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSG 541
             L+ ++    QF        K   L  L+  SN        V   +L +LD S N  S 
Sbjct: 307 QHLELVNCKFGQFPT-----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS- 360

Query: 542 SISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNS-LG 600
                       T SL+ L L+ N +   +   ++  + L+ L   ++        S   
Sbjct: 361 FKGCCSQSDFGTT-SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 601 SITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR 660
           S+ +L++L +                ++L  L +  N F  N           +  L L 
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 661 SNQFHGPLPKTICDLAFLQILDLADNNLS 689
             Q     P     L+ LQ+L++A N L 
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (330), Expect = 5e-32
 Identities = 75/460 (16%), Positives = 147/460 (31%), Gaps = 57/460 (12%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF- 159
            +  LK L  L+++ N  Q  ++P +  ++ NL +L+LS  +   +    L  L  +   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 160 ---LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCS 216
              LDLS N +          +  L  L LR+ N    +        L  L   RL    
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRN-NFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 217 LHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECL---NLRNNSLQG 273
             +   L       L+ L +L   +    + +  + D +  F+ L  +   +L + +++ 
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 274 TISDAI-GNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFS 332
               +       +  ++                 F  LK  +L+ +  +           
Sbjct: 297 VKDFSYNFGWQHLELVNCKFG------------QFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 333 GCVSNGLESLDMRSSSIY--GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL 390
              S  LE LD+  + +   G  +       +L  L+L+ N ++  +  +F  L  L  L
Sbjct: 345 DLPS--LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401

Query: 391 QIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRF 450
               + L        F +L  L +  +                     L           
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------AFNGIFNGL----------- 444

Query: 451 PQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN--LTKNTQL 508
                    L+ L +  +   + F          L FLD+   Q   ++S       + L
Sbjct: 445 -------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSL 496

Query: 509 LFLSVNSNNMSGPLPLV---SSNLVYLDFSNNSFSGSISH 545
             L++ SN +      +    ++L  +    N +  S   
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (278), Expect = 2e-25
 Identities = 77/353 (21%), Positives = 125/353 (35%), Gaps = 40/353 (11%)

Query: 97  KVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVG---MIPPQLGN 153
            + P       L  L L +N      +   I  +  L    L   +F     +       
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 154 LSDLQFLDLSSNYLYVDNVWWL------SGLSFLEHLDLRSVNLSKASDWLMATNTLPSL 207
           L  L  L +    L   + +        + L+ +    L SV + +  D+          
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY----NFGW 306

Query: 208 LELRLSNCSLHHFPTLASP-------------IPRGLQNLTSLKHLDLDSNHFN--SSIP 252
             L L NC    FPTL                      +L SL+ LDL  N  +      
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 253 DWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKS 312
              +  + L+ L+L  N +  T+S     L  +  LD   +  L+     S+  F +L+ 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSV--FLSLR- 421

Query: 313 VNLRGVHLSQ-EISEIL-DIFSGCVSNGLESLDMRSSSIYGHLTDQ-LGQFRNLVTLNLA 369
            NL  + +S          IF+G  S  LE L M  +S   +       + RNL  L+L+
Sbjct: 422 -NLIYLDISHTHTRVAFNGIFNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 370 NNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQL 422
              +  L P +F  LS+L+ L +  N+L  ++ +  F  LT L    +  N  
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 5e-14
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 98  VNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDL 157
           ++   L L+ L +LD   ++ + +       S+RNL YL++S T            LS L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 158 QFLDLSSNYLYVDNVWW-LSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCS 216
           + L ++ N    + +    + L  L  LDL    L + S    A N+L SL  L +++  
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMASNQ 505

Query: 217 LHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY 256
           L   P            LTSL+ + L +N ++ S P   Y
Sbjct: 506 LKSVPDGI------FDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 19/127 (14%)

Query: 678 LQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS 737
            + LDL+ N L         +   +                     LD+SR         
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQV-------------------LDLSRCEIQTIEDG 70

Query: 738 EVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLN 797
              +L  L ++  + N        +   + +L+ +      L+      +  L  L  LN
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 798 LSNNNLT 804
           +++N + 
Sbjct: 131 VAHNLIQ 137

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (367), Expect = 3e-37
 Identities = 101/501 (20%), Positives = 188/501 (37%), Gaps = 79/501 (15%)

Query: 138 LSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDW 197
             DT    +       L++     L    +   +    + L  +  L    + +      
Sbjct: 9   TQDTPINQIFT--DTALAEKMKTVLGKTNV--TDTVSQTDLDQVTTLQADRLGIKS---- 60

Query: 198 LMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYK 257
           +     L +L ++  SN  L     L         NLT L  + +++N      P  L  
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITPLK--------NLTKLVDILMNNNQIADITP--LAN 110

Query: 258 FSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRG 317
            + L  L L NN +  T  D + NLT+++ L+LS N      I   ++    L   +L+ 
Sbjct: 111 LTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSN-----TI-SDISALSGLT--SLQQ 160

Query: 318 VHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLI 377
           +    +++++  + +   +  LE LD+ S+ +       L +  NL +L   NN I  + 
Sbjct: 161 LSFGNQVTDLKPL-ANLTT--LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT 215

Query: 378 PESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLV 437
           P   G L+ L EL +  N+L   +     A+LT L+   +  NQ++       + P    
Sbjct: 216 P--LGILTNLDELSLNGNQLKD-IGT--LASLTNLTDLDLANNQISN------LAPLS-- 262

Query: 438 ALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHG 497
                                 L  L L  ++IS+I P+  L     L  L++  NQ   
Sbjct: 263 ------------------GLTKLTELKLGANQISNISPLAGLT---ALTNLELNENQLED 301

Query: 498 KISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKS 556
            IS ++    L +L++  NN+S   P+ S + L  L F NN  S   S      +    +
Sbjct: 302 -ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS------LANLTN 354

Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
           +  L    N +    P   ++   +  L L++  ++    N   +++    +      L 
Sbjct: 355 INWLSAGHNQISDLTPLANLT--RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 617 GKIPISLKNCTALASLDVDEN 637
              P ++ +  +    D+  N
Sbjct: 413 --APATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (360), Expect = 3e-36
 Identities = 109/551 (19%), Positives = 200/551 (36%), Gaps = 112/551 (20%)

Query: 76  HILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRY 135
             ++  L   + ++           +  DL  ++ L        G++    +  + NL  
Sbjct: 25  EKMKTVLGKTNVTDT---------VSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQ 72

Query: 136 LNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKAS 195
           +N S+ Q   + P  L NL+ L  + +++N +   ++  L+ L+ L  L L +  ++   
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQITDID 128

Query: 196 DWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWL 255
                   L +L  L LS+ ++             L  LTSL+ L    N      P  L
Sbjct: 129 ----PLKNLTNLNRLELSSNTISDIS--------ALSGLTSLQQLSF-GNQVTDLKP--L 173

Query: 256 YKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNL 315
              + LE L++ +N +  +    +  LT++  L  + N     +I   +     L   NL
Sbjct: 174 ANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN-----QI-SDITPLGILT--NL 223

Query: 316 RGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVG 375
             + L+               N L+ +              L    NL  L+LANN I  
Sbjct: 224 DELSLN--------------GNQLKDI------------GTLASLTNLTDLDLANNQISN 257

Query: 376 LIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQ 435
           L P     L+ L EL++  N+++        A LT L+   +  NQL        I P  
Sbjct: 258 LAP--LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLED------ISPIS 306

Query: 436 LVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQF 495
                               + K+L YL L  + ISDI P+  L    +L+ L    N+ 
Sbjct: 307 --------------------NLKNLTYLTLYFNNISDISPVSSLT---KLQRLFFYNNKV 343

Query: 496 HGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNET 554
              +S+L   T + +LS   N +S   PL + + +  L  ++ +++ +  ++        
Sbjct: 344 SD-VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYK------- 395

Query: 555 KSLEGLKLTDNYLQGEIPDCWMS-YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKN 613
            ++       N     I    +S   +     ++ N  S        + +  V +     
Sbjct: 396 ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTT 454

Query: 614 RLSGKIPISLK 624
             SG +   LK
Sbjct: 455 TFSGTVTQPLK 465

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (357), Expect = 6e-36
 Identities = 106/544 (19%), Positives = 187/544 (34%), Gaps = 107/544 (19%)

Query: 175 LSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNL 234
            + L+      L   N++      ++   L  +  L+     +            G++ L
Sbjct: 20  DTALAEKMKTVLGKTNVTD----TVSQTDLDQVTTLQADRLGIKSID--------GVEYL 67

Query: 235 TSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINI 294
            +L  ++  +N      P  L   + L  + + NN +       + NLT+++ L L  N 
Sbjct: 68  NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNN- 122

Query: 295 GLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLT 354
            +    P  + N  NL  + L    +S      +   SG  S    S   + + +     
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLSFGNQVTDLKP--- 172

Query: 355 DQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSW 414
             L     L  L++++N +  +      +L+ L  L   +N+++          LT L  
Sbjct: 173 --LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS---DITPLGILTNLDE 225

Query: 415 FRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIF 474
             + GNQL        I                        S  +L  L+L N++IS++ 
Sbjct: 226 LSLNGNQLKD------IGTLA--------------------SLTNLTDLDLANNQISNLA 259

Query: 475 PIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLD 533
           P+  L     L  L +G NQ    IS L   T L  L +N N +    P+ +  NL YL 
Sbjct: 260 PLSGLTK---LTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 315

Query: 534 FSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSG 593
              N+ S                +  L                    L+ L   NNK S 
Sbjct: 316 LYFNNISDIS------------PVSSLT------------------KLQRLFFYNNKVSD 345

Query: 594 NLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSR 653
              +SL ++T++ WL    N++S   P++  N T +  L +++  +      +       
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 654 MLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKS----FT 709
             V  +         P TI D       D+  N  S    +     +  VT+      F+
Sbjct: 402 NTVKNVTGALI---APATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFS 457

Query: 710 GSVV 713
           G+V 
Sbjct: 458 GTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  136 bits (345), Expect = 2e-34
 Identities = 101/459 (22%), Positives = 171/459 (37%), Gaps = 65/459 (14%)

Query: 357 LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR 416
                  +   L   ++   +      L  +  LQ     +  ++       L  L+   
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDGV--EYLNNLTQIN 74

Query: 417 VGGNQLTFEVKHDWIPPF----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472
              NQLT       I P     +LV + ++N  +    P  L +  +L  L L N++I+D
Sbjct: 75  FSNNQLTD------ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD 126

Query: 473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVY 531
           I P++ L     L  L++  N     IS L+  T L  LS   N ++   PL + + L  
Sbjct: 127 IDPLKNLT---NLNRLELSSNTISD-ISALSGLTSLQQLSF-GNQVTDLKPLANLTTLER 181

Query: 532 LDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKF 591
           LD S+N  S  IS        +  +LE L  T+N +    P   ++  NL  L L+ N+ 
Sbjct: 182 LDISSNKVS-DISVL-----AKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQL 233

Query: 592 SGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERF 651
                 +L S+T+L  L L  N++S   P+S    T L  L +  N+     P       
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPL---AGL 286

Query: 652 SRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGS 711
           + +  L L  NQ     P  I +L  L  L L  NN+S   P  +S+LT +         
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR------- 335

Query: 712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES 771
                       L    N  S   +S + NL  +  ++   N  +   P  +  +  +  
Sbjct: 336 ------------LFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379

Query: 772 VDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS 810
           +  +    +       ++++  N +      L     +S
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS 418

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (331), Expect = 2e-33
 Identities = 85/443 (19%), Positives = 166/443 (37%), Gaps = 99/443 (22%)

Query: 363 LVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQL 422
             TL      I  + P++   L+      +    +   ++      L  ++   V G ++
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 423 TFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSA 482
                   I   + +                     +L+YLNL  ++I+DI P+  L   
Sbjct: 57  AS------IQGIEYL--------------------TNLEYLNLNGNQITDISPLSNLV-- 88

Query: 483 SQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSG 541
            +L  L +G N+    IS L   T L  L +N +N+S   PL + + +  L+   N    
Sbjct: 89  -KLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS 146

Query: 542 SISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGS 601
            +S       +    L  L +T++ ++   P   ++  +L  L L+ N+      + L S
Sbjct: 147 DLSPL-----SNMTGLNYLTVTESKVKDVTPIANLT--DLYSLSLNYNQIED--ISPLAS 197

Query: 602 ITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRS 661
           +TSL +     N+++   P++  N T L SL +  N+     P                 
Sbjct: 198 LTSLHYFTAYVNQITDITPVA--NMTRLNSLKIGNNKITDLSP----------------- 238

Query: 662 NQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLV 721
                     + +L+ L  L++  N +S      I+ +  +  +K               
Sbjct: 239 ----------LANLSQLTWLEIGTNQISD-----INAVKDLTKLKM-------------- 269

Query: 722 SLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG 781
             L++  N  S   +S + NL  L S+  + N       E IG +  L ++  S N ++ 
Sbjct: 270 --LNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 782 EIPQSMSSLTFLNHLNLSNNNLT 804
             P  ++SL+ ++  + +N  + 
Sbjct: 326 IRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (312), Expect = 6e-31
 Identities = 79/368 (21%), Positives = 150/368 (40%), Gaps = 40/368 (10%)

Query: 338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
           G  +L    + I   +          +   L   S+  ++     +L ++ +L +   K+
Sbjct: 1   GAATLATLPAPI-NQIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 398 NGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF----QLVALGLHNCYVGSRFPQW 453
             ++       LT L +  + GNQ+T       I P     +L  L +    +       
Sbjct: 57  A-SIQG--IEYLTNLEYLNLNGNQITD------ISPLSNLVKLTNLYIGTNKITD--ISA 105

Query: 454 LHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSV 513
           L +  +L+ L L    ISDI P+  L    ++  L++G N     +S L+  T L +L+V
Sbjct: 106 LQNLTNLRELYLNEDNISDISPLANLT---KMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 514 NSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP 572
             + +    P+ + ++L  L  + N             +    SL       N +    P
Sbjct: 163 TESKVKDVTPIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDITP 216

Query: 573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632
              M+   L  LK+ NNK +    + L +++ L WL +  N++S     ++K+ T L  L
Sbjct: 217 VANMT--RLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKML 270

Query: 633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAI 692
           +V  N+ + +I        S++  L L +NQ      + I  L  L  L L+ N+++   
Sbjct: 271 NVGSNQ-ISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 693 PKCISNLT 700
           P  +++L+
Sbjct: 328 P--LASLS 333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (307), Expect = 3e-30
 Identities = 63/325 (19%), Positives = 122/325 (37%), Gaps = 39/325 (12%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
             +  L +L YL+L+ N    +     + ++  L  L +   +        L NL++L+ 
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKIT--DISALQNLTNLRE 114

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
           L L+ + +   ++  L+ L+ +  L+L + +       L   + +  L  L ++   +  
Sbjct: 115 LYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDLSPL---SNMTGLNYLTVTESKVKD 169

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAI 279
                      + NLT L  L L+ N      P  L   + L       N +  T    +
Sbjct: 170 VT--------PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI--TDITPV 217

Query: 280 GNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNG 338
            N+T ++ L +  N     +I   ++   NL    L  + +   +IS+I +         
Sbjct: 218 ANMTRLNSLKIGNN-----KI-TDLSPLANLS--QLTWLEIGTNQISDI-NAVKDLTK-- 266

Query: 339 LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN 398
           L+ L++ S+ I       L     L +L L NN +     E  G L+ L  L +  N + 
Sbjct: 267 LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 399 GTLSEFHFANLTKLSWFRVGGNQLT 423
                   A+L+K+         + 
Sbjct: 325 DIRP---LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (306), Expect = 4e-30
 Identities = 80/414 (19%), Positives = 138/414 (33%), Gaps = 89/414 (21%)

Query: 204 LPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLEC 263
           L   +   L   S+    T           L S+  L +      +SI   +   + LE 
Sbjct: 21  LAEGIRAVLQKASVTDVVTQE--------ELESITKLVVAGEKV-ASIQG-IEYLTNLEY 70

Query: 264 LNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQE 323
           LNL  N +       + NL  ++ L +  N   +     ++ N  NL+ + L        
Sbjct: 71  LNLNGNQITD--ISPLSNLVKLTNLYIGTN---KITDISALQNLTNLRELYLNE------ 119

Query: 324 ISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ 383
                        + +  +              L     + +LNL  N  +         
Sbjct: 120 -------------DNISDI------------SPLANLTKMYSLNLGANHNLS-DLSPLSN 153

Query: 384 LSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHN 443
           ++ L  L + ++K+   ++    ANLT L    +  NQ+        I P       L +
Sbjct: 154 MTGLNYLTVTESKVKD-VTP--IANLTDLYSLSLNYNQIED------ISPLA----SLTS 200

Query: 444 CYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLT 503
                           L Y     ++I+DI P+  +     L  L +G N+    +S L 
Sbjct: 201 ----------------LHYFTAYVNQITDITPVANMTR---LNSLKIGNNKIT-DLSPLA 240

Query: 504 KNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKL 562
             +QL +L + +N +S    +   + L  L+  +N  S  IS       N    L  L L
Sbjct: 241 NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS-DISVL-----NNLSQLNSLFL 294

Query: 563 TDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
            +N L  E  +      NL  L LS N  +   P  L S++ +         + 
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  120 bits (303), Expect = 9e-30
 Identities = 89/423 (21%), Positives = 154/423 (36%), Gaps = 105/423 (24%)

Query: 76  HILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRY 135
             +   L+  S ++              +L+ ++ L ++      +Q    I  + NL Y
Sbjct: 23  EGIRAVLQKASVTDV---------VTQEELESITKLVVAGEKVASIQ---GIEYLTNLEY 70

Query: 136 LNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKAS 195
           LNL+  Q   + P  L NL  L  L + +N         ++ +S L++            
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNK--------ITDISALQN------------ 108

Query: 196 DWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWL 255
                   L +L EL L+  ++     LA        NLT +  L+L +NH N S    L
Sbjct: 109 --------LTNLRELYLNEDNISDISPLA--------NLTKMYSLNLGANH-NLSDLSPL 151

Query: 256 YKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNL 315
              + L  L +  + +       I NLT +  L L+ N     +I   ++   +L   +L
Sbjct: 152 SNMTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYN-----QI-EDISPLASLT--SL 201

Query: 316 RGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVG 375
                                N +  +              +     L +L + NN I  
Sbjct: 202 HYFTAY--------------VNQITDITP------------VANMTRLNSLKIGNNKITD 235

Query: 376 LIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF- 434
           L P     LS L  L+I  N+++  ++     +LTKL    VG NQ++       I    
Sbjct: 236 LSP--LANLSQLTWLEIGTNQIS-DINA--VKDLTKLKMLNVGSNQISD------ISVLN 284

Query: 435 ---QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVG 491
              QL +L L+N  +G+   + +    +L  L L  + I+DI P+  L    ++   D  
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLS---KMDSADFA 341

Query: 492 LNQ 494
              
Sbjct: 342 NQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
            A+ DL  L  L++ SN    + +   + ++  L  L L++ Q        +G L++L  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSK 193
           L LS N++   ++  L+ LS ++  D  +  + K
Sbjct: 316 LFLSQNHI--TDIRPLASLSKMDSADFANQVIKK 347

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (317), Expect = 1e-30
 Identities = 71/317 (22%), Positives = 121/317 (38%), Gaps = 18/317 (5%)

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQFLDLSSN 165
               LDL  N  + +    F     +L  L L++   V  + P    NL +L+ L L SN
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSN 90

Query: 166 YLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLAS 225
            L +  +   +GLS L  LD+    +    D       L +L  L + +  L +    A 
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLD--YMFQDLYNLKSLEVGDNDLVYISHRA- 147

Query: 226 PIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSV 285
                   L SL+ L L+  +  S   + L     L  L LR+ ++      +   L  +
Sbjct: 148 -----FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 286 SWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR 345
             L++S    L   +  +     NL S+++   +L+  +          V   L  L++ 
Sbjct: 203 KVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLT-AVPY--LAVRHLVY--LRFLNLS 256

Query: 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFH 405
            + I       L +   L  + L    +  + P +F  L+ LR L +  N+L  TL E  
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESV 315

Query: 406 FANLTKLSWFRVGGNQL 422
           F ++  L    +  N L
Sbjct: 316 FHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 57/343 (16%), Positives = 112/343 (32%), Gaps = 53/343 (15%)

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419
                 L+L  N I  L  + F     L EL++ +N +   +    F NL  L    +  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRS 89

Query: 420 NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFL 479
           N+L        IP      L                   +L  L++  ++I  +    F 
Sbjct: 90  NRLKL------IPLGVFTGL------------------SNLTKLDISENKIVILLDYMF- 124

Query: 480 KSASQLKFLDVGLNQFHGKISNLTKNT-----QLLFLSVNSNNMS-------GPLPLVSS 527
           +    LK L+VG N     +  ++         L  L++   N++         L     
Sbjct: 125 QDLYNLKSLEVGDND----LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH---- 176

Query: 528 NLVYLDFSNNSFSG-SISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKL 586
            L+ L   + + +      F          L+ L+++       +    +   NL  L +
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKR-----LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTW 646
           ++   +     ++  +  L +L L  N +S      L     L  + +   + +  +  +
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY 290

Query: 647 FGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS 689
                + + VL +  NQ           +  L+ L L  N L+
Sbjct: 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 66/328 (20%), Positives = 127/328 (38%), Gaps = 34/328 (10%)

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
           +P G+   T  + LDL  N   +   D    F  LE L L  N +      A  NL ++ 
Sbjct: 26  VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILD-IFSGCVSNGLESLDM 344
            L L  N  L+  IP  +  F  L   NL  + +S+ +I  +LD +F    +  L+SL++
Sbjct: 84  TLGLRSN-RLK-LIPLGV--FTGLS--NLTKLDISENKIVILLDYMFQDLYN--LKSLEV 135

Query: 345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEF 404
             + +            +L  L L   ++  +  E+   L  L  L++    +N  + ++
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDY 194

Query: 405 HFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLN 464
            F  L +L    +        +  + +    L +L + +C + +     +    +L++LN
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254

Query: 465 LLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNT-----QLLFLSVNSNNMS 519
           L  + IS I          +L+ + +   Q    ++ +          L  L+V+ N ++
Sbjct: 255 LSYNPISTIEGSML-HELLRLQEIQLVGGQ----LAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 520 -------GPLPLVSSNLVYLDFSNNSFS 540
                    +     NL  L   +N  +
Sbjct: 310 TLEESVFHSVG----NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.2 bits (206), Expect = 9e-17
 Identities = 50/281 (17%), Positives = 98/281 (34%), Gaps = 26/281 (9%)

Query: 525 VSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVL 584
           + +    LD   N     I             LE L+L +N +    P  + +  NL+ L
Sbjct: 30  IPTETRLLDLGKNR----IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85

Query: 585 KLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIP 644
            L +N+           +++L  L + +N++   +    ++   L SL+V +N+ V    
Sbjct: 86  GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145

Query: 645 TWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVT 704
             F    + +  L L          + +  L  L +L L   N++             + 
Sbjct: 146 RAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN------------AIR 192

Query: 705 VKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPE-SI 763
             SF         L  + +L+IS   +   +         L S++ +    T  +P  ++
Sbjct: 193 DYSFKR-------LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAV 244

Query: 764 GTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
             +  L  ++ S N +S      +  L  L  + L    L 
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 65/355 (18%), Positives = 117/355 (32%), Gaps = 65/355 (18%)

Query: 459 HLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNT-----QLLFLSV 513
             + L+L  +RI  +    F  S   L+ L++  N     +S +          L  L +
Sbjct: 33  ETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENI----VSAVEPGAFNNLFNLRTLGL 87

Query: 514 NSNNMSGPLPLVS----SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG 569
            SN +   +PL      SNL  LD S N     +  ++     +  +L+ L++ DN L  
Sbjct: 88  RSNRLKL-IPLGVFTGLSNLTKLDISENKIV-ILLDYM---FQDLYNLKSLEVGDNDLV- 141

Query: 570 EIPDCWMSY-QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTA 628
            I     S   +L+ L L     +     +L  +  L+ L LR   ++     S K    
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 629 LASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNL 688
           L  L++    ++  +        + +  L +            +  L +L+ L+L+ N +
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 689 SGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSI 748
           S  I                         L  +  + +                  L  +
Sbjct: 261 S-TIEGS-----------MLHE-------LLRLQEIQLVGGQ--------------LAVV 287

Query: 749 NFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL 803
                 F G        +  L  ++ S NQL+        S+  L  L L +N L
Sbjct: 288 --EPYAFRG--------LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
           P  L   +L+ L ++  +   V     +  +  LR+LNLS      +    L  L  LQ 
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLH 218
           + L    L V   +   GL++L  L++    L+   + +    ++ +L  L L +  L 
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH--SVGNLETLILDSNPLA 333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (313), Expect = 3e-30
 Identities = 102/592 (17%), Positives = 185/592 (31%), Gaps = 141/592 (23%)

Query: 98  VNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDL 157
           +NP  +    L      S++    ++P    ++++      + +++    PP  G   ++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 158 QFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSL 217
               L                     L+L ++ LS   +        P L  L  S  SL
Sbjct: 61  AVSRLRDCL-----------DRQAHELELNNLGLSSLPE------LPPHLESLVASCNSL 103

Query: 218 HHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISD 277
                    +P   Q+L SL   + +    +   P        LE L + NN L+  + +
Sbjct: 104 TE-------LPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPE 148

Query: 278 AIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSN 337
            + N + +  +D+  N      + +      +L+ +                      +N
Sbjct: 149 -LQNSSFLKIIDVDNN-----SLKKLPDLPPSLEFIAAG-------------------NN 183

Query: 338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
            LE L             +L     L  +   NNS+  L         +L  +   +N L
Sbjct: 184 QLEEL------------PELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNIL 227

Query: 398 NGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQ 457
              L E    NL  L+      N L                            P      
Sbjct: 228 E-ELPE--LQNLPFLTTIYADNNLLK-------------------------TLPDLP--- 256

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNN 517
             L+ LN+ ++ ++D+      +S + L   +   +       NL        L+ +SN 
Sbjct: 257 PSLEALNVRDNYLTDL--PELPQSLTFLDVSENIFSGLSELPPNLYY------LNASSNE 308

Query: 518 MSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMS 577
           +   L  +  +L  L+ SNN     +             LE L  + N+L  E+P+    
Sbjct: 309 IRS-LCDLPPSLEELNVSNNKLI-ELPALPP-------RLERLIASFNHLA-EVPE---L 355

Query: 578 YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN 637
            QNLK L +  N      P+   S+       LR N    ++P   +N   L  L V+ N
Sbjct: 356 PQNLKQLHVEYNPLR-EFPDIPESVED-----LRMNSHLAEVPELPQN---LKQLHVETN 406

Query: 638 EFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS 689
                    F +    +  L + S +   P          L+      ++  
Sbjct: 407 PL-----REFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (272), Expect = 4e-25
 Identities = 86/549 (15%), Positives = 171/549 (31%), Gaps = 113/549 (20%)

Query: 261 LECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHL 320
           L+     +++L   +     N+ S +    + +   +   P        +    LR    
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRD--- 67

Query: 321 SQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES 380
                        C+      L++ +  +   L +      +L +L  + NS+  L PE 
Sbjct: 68  -------------CLDRQAHELELNNLGL-SSLPELPP---HLESLVASCNSLTEL-PEL 109

Query: 381 FGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF----QL 436
              L +L         L+          L  L    V  NQL        +P       L
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPP-----LLEYLG---VSNNQLEK------LPELQNSSFL 155

Query: 437 VALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
             + + N  +  + P        L+++   N+++ ++  ++ L     L  +    N   
Sbjct: 156 KIIDVDNNSL-KKLPDLP---PSLEFIAAGNNQLEELPELQNLPF---LTAIYADNNSLK 208

Query: 497 GKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETK 555
                      L  +   +N +     L +   L  +   NN    ++            
Sbjct: 209 KLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPP------- 257

Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
           SLE L + DNYL  ++P+     Q+L  L +S N FS  L     ++  L       N +
Sbjct: 258 SLEALNVRDNYLT-DLPE---LPQSLTFLDVSENIFS-GLSELPPNLYYL---NASSNEI 309

Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDL 675
              +     +   L  L+V  N+ +  +P        R+  LI   N     +P+   +L
Sbjct: 310 R-SLCDLPPS---LEELNVSNNKLI-ELPALPP----RLERLIASFNHLAE-VPELPQNL 359

Query: 676 AFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI 735
              + L +  N L    P    ++                         D+  N+   E+
Sbjct: 360 ---KQLHVEYNPLR-EFPDIPESVE------------------------DLRMNSHLAEV 391

Query: 736 LSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNH 795
                NLK L   +   N      P+   +   +E +  +  ++      +  +   L  
Sbjct: 392 PELPQNLKQL---HVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLED 444

Query: 796 LNLSNNNLT 804
               +++  
Sbjct: 445 DVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.4 bits (243), Expect = 2e-21
 Identities = 81/448 (18%), Positives = 143/448 (31%), Gaps = 88/448 (19%)

Query: 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
               L      ++++  + P     + +  E     ++              +++  R+ 
Sbjct: 9   SNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLR 66

Query: 419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRF 478
                           Q   L L+N  + S  P+      HL+ L    + ++++     
Sbjct: 67  DCLDR-----------QAHELELNNLGL-SSLPELP---PHLESLVASCNSLTELPE--L 109

Query: 479 LKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS--SNLVYLDFSN 536
            +S   L   +  L         L        L V++N +   LP +   S L  +D  N
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPLLEY------LGVSNNQLEK-LPELQNSSFLKIIDVDN 162

Query: 537 NSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP 596
           NS    +            SLE +   +N L+ E+P+   +   L  +   NN     LP
Sbjct: 163 NSLK-KLPDLP-------PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLP 211

Query: 597 NSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLV 656
           +   S   L  +    N L       L+N   L ++  D N     +P         +  
Sbjct: 212 DLPLS---LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEA 261

Query: 657 LILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYRE 716
           L +R N     LP+    L FL + +   + L     +   NL                 
Sbjct: 262 LNVRDNYLTD-LPELPQSLTFLDVSENIFSGL----SELPPNLY---------------- 300

Query: 717 ILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSV 776
                  L+ S N     +     +L+ L   N S N     +P        LE +  S 
Sbjct: 301 ------YLNASSNEIR-SLCDLPPSLEEL---NVSNNKLI-ELPALPPR---LERLIASF 346

Query: 777 NQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
           N L+ E+P+   +L     L++  N L 
Sbjct: 347 NHLA-EVPELPQNLK---QLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 83.9 bits (208), Expect = 4e-17
 Identities = 71/383 (18%), Positives = 123/383 (32%), Gaps = 96/383 (25%)

Query: 470 ISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNL 529
           +S+ F    L+ +S L  + V                         +      P  +   
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAENV----------KSKTEYYNAWSEWERNAPPGNGEQ 57

Query: 530 VYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNN 589
             +  S              R    +    L+L +  L   +P+      +L+ L  S N
Sbjct: 58  REMAVSRL------------RDCLDRQAHELELNNLGLS-SLPE---LPPHLESLVASCN 101

Query: 590 KFSGNLPNSLGSITSLVWLYLRKNRLSGKIPI---------------SLKNCTALASLDV 634
             +  LP    S+ SL+        LS   P+                L+N + L  +DV
Sbjct: 102 SLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 160

Query: 635 DENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPK 694
           D N     +P         +  +   +NQ    LP  + +L FL  +   +N+L   +P 
Sbjct: 161 DNNSLK-KLPDLPP----SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPD 212

Query: 695 CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNT 754
              +L                        +    N      L E+ NL  L +I    N 
Sbjct: 213 LPLSLE----------------------SIVAGNNILE--ELPELQNLPFLTTIYADNNL 248

Query: 755 FTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLN-----------------HLN 797
               +P+   +   LE+++   N L+ ++P+   SLTFL+                 +LN
Sbjct: 249 LK-TLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303

Query: 798 LSNNNLTGKIPLSTQLQSFNASS 820
            S+N +     L   L+  N S+
Sbjct: 304 ASSNEIRSLCDLPPSLEELNVSN 326

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (300), Expect = 3e-28
 Identities = 89/495 (17%), Positives = 176/495 (35%), Gaps = 39/495 (7%)

Query: 315 LRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIV 374
              VH+  +  ++   F     N  + +  ++S++       L  FR +  LNL +  I 
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 375 GLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF 434
            +   +F    T+++L +  N +   L    F N+  L+   +  N L+       +P  
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS------LPRG 141

Query: 435 ------QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFL 488
                 +L  L + N  +         +   LQ L L ++R++ +  +  + S   L   
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPS---LFHA 197

Query: 489 DVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLC 548
           +V  N     +S L     +  L  + N+++     V+  L  L   +N+ +   +  L 
Sbjct: 198 NVSYNL----LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLN 252

Query: 549 YRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWL 608
           Y       L  + L+ N L+  +   ++  Q L+ L +SNN+    L      I +L  L
Sbjct: 253 Y-----PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 306

Query: 609 YLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPL 668
            L  N L   +  +      L +L +D N    +I T        +  L L  N +    
Sbjct: 307 DLSHNHLL-HVERNQPQFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSHNDWDC-- 359

Query: 669 PKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISR 728
                  A  + +     + +    K    L   +  K      + R +  +     + +
Sbjct: 360 ---NSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK 416

Query: 729 NNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRA-LESVDFSVNQLSGEIPQSM 787
              +    S    + ++QS++       G   +    + A +  +   V QL+ E  Q  
Sbjct: 417 VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQE 476

Query: 788 SSLTFLNHLNLSNNN 802
             L  L+    +N  
Sbjct: 477 QLLQGLHAEIDTNLR 491

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (261), Expect = 2e-23
 Identities = 58/464 (12%), Positives = 145/464 (31%), Gaps = 63/464 (13%)

Query: 84  NPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQF 143
           N     P    +            +     + + + G +      ++ N + +   ++  
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFED----ITLNNQKIVTFKNSTM 63

Query: 144 VGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNT 203
             +    L +   ++ L+L+   +   + +  +    ++ L +    +      +     
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--N 121

Query: 204 LPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLEC 263
           +P L  L L    L   P           N   L  L + +N+      D     + L+ 
Sbjct: 122 VPLLTVLVLERNDLSSLP------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175

Query: 264 LNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQE 323
           L L +N L       +  + S+   ++S N      +  ++A    ++ ++     ++  
Sbjct: 176 LQLSSNRLT---HVDLSLIPSLFHANVSYN-----LL-STLAIPIAVEELDASHNSINV- 225

Query: 324 ISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ 383
                    G V+  L  L ++ +++    T  L  +  LV ++L+ N +  ++   F +
Sbjct: 226 -------VRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 384 LSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHN 443
           +  L  L I +N+L       +   +  L    +  N L                     
Sbjct: 277 MQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-------------------- 314

Query: 444 CYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLT 503
                   +       L+ L L ++ I  +           LK L +  N +    S   
Sbjct: 315 -----HVERNQPQFDRLENLYLDHNSIVTLKLSTH----HTLKNLTLSHNDWDC-NSLRA 364

Query: 504 KNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFL 547
               +   +V+  +    +     + +    S+  +   +  ++
Sbjct: 365 LFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 97.3 bits (242), Expect = 5e-21
 Identities = 69/456 (15%), Positives = 139/456 (30%), Gaps = 99/456 (21%)

Query: 207 LLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNL 266
             +    +  +             +  L + K +   ++         L  F  +E LNL
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 267 RNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISE 326
            +  ++   + A     ++  L +  N      +P  +  F N+    L  + L      
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPHV--FQNVP--LLTVLVLE----- 131

Query: 327 ILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLST 386
                     N L SL                    L TL+++NN++  +  ++F   ++
Sbjct: 132 ---------RNDLSSLPRGI----------FHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 387 LRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYV 446
           L+ LQ+  N+    L+    + +  L    V  N L+                       
Sbjct: 173 LQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLLST---------------------- 206

Query: 447 GSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNT 506
                  L     ++ L+  ++ I+ +          +L  L +  N      + L    
Sbjct: 207 -------LAIPIAVEELDASHNSINVVRGPVN----VELTILKLQHNNLT-DTAWLLNYP 254

Query: 507 QLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNY 566
            L+ + ++ N +                  + F               + LE L +++N 
Sbjct: 255 GLVEVDLSYNELE-------------KIMYHPFVK------------MQRLERLYISNNR 289

Query: 567 LQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNC 626
           L   +         LKVL LS+N    ++  +      L  LYL  N +     + L   
Sbjct: 290 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTH 344

Query: 627 TALASLDVDENEFVGNIPTWFGERFSRMLVLILRSN 662
             L +L +  N++  N         +R  V     +
Sbjct: 345 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 81/511 (15%), Positives = 149/511 (29%), Gaps = 71/511 (13%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFL 160
              ++  L+ L L  ND   +       +   L  L++S+     +        + LQ L
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 161 DLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHF 220
            LSSN L   ++  +     L H ++    LS  +          ++ EL  S+ S++  
Sbjct: 177 QLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLAI-------PIAVEELDASHNSINVV 226

Query: 221 PTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIG 280
                           L  L L  N+       WL  +  L  ++L  N L+  +     
Sbjct: 227 RGPV---------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275

Query: 281 NLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLE 340
            +  +  L +S N                              +  +        +  L+
Sbjct: 276 KMQRLERLYISNN-----------------------------RLVALNLYGQPIPT--LK 304

Query: 341 SLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGT 400
            LD+  + +  H+     QF  L  L L +NSIV L         TL+ L +  N  +  
Sbjct: 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN 360

Query: 401 LSEFHFANLTKLSWFRVGGNQLTFEVKHDWI----PPFQLVALGLHNCYVGSRFPQWLHS 456
                F N+ + +      +          +         +   L    + S   +   +
Sbjct: 361 SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRA 420

Query: 457 QKHLQYLNLLNSRISDIFPI--RFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVN 514
           Q      + +NS  S    I  +        + L+  +N+   ++  LT         + 
Sbjct: 421 QGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQ 480

Query: 515 SNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDC 574
             +      L    L              S  L       K  +  KL +   Q    + 
Sbjct: 481 GLHAEIDTNLRRYRLPKDGL------ARSSDNLNKVFTHLKERQAFKLRET--QARRTEA 532

Query: 575 WMSYQNLKVLKLSNNKFSGNLPNSLGSITSL 605
               +  + L+  N      L N       L
Sbjct: 533 DAKQKETEDLEQENIALEKQLDNKRAKQAEL 563

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (286), Expect = 1e-27
 Identities = 59/354 (16%), Positives = 105/354 (29%), Gaps = 50/354 (14%)

Query: 124 PRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEH 183
                       L    +  +      L         D +       + W  +  +  + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQI 60

Query: 184 LDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLD 243
                  L   +D L    T P  + L L +  L          P     L+ L+H+ +D
Sbjct: 61  ETRTGRALKATADLLEDA-TQPGRVALELRSVPLPQ-------FPDQAFRLSHLQHMTID 112

Query: 244 SNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRS 303
           +      +PD + +F+ LE L L  N L+  +  +I +L  +  L +     L   +P  
Sbjct: 113 AAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-ELPEP 169

Query: 304 MANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNL 363
           +A+             L                  L+SL +  + I   L   +   +NL
Sbjct: 170 LASTDASGEHQ----GLVN----------------LQSLRLEWTGIR-SLPASIANLQNL 208

Query: 364 VTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRV-GGNQL 422
            +L + N+ +  L   +   L  L EL +             F     L    +   + L
Sbjct: 209 KSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNL 266

Query: 423 TFEVKHDWIPP-----FQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRIS 471
                   +P       QL  L L  C   SR P  +        + +     +
Sbjct: 267 LT------LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (265), Expect = 6e-25
 Identities = 46/364 (12%), Positives = 93/364 (25%), Gaps = 70/364 (19%)

Query: 454 LHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSV 513
            H     + L    S     +    L    +    D        + +N         +  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYH-DVLSQWQRHYNADRNRWHSAWRQANSNN----PQIET 62

Query: 514 NSNNMSGPLP-----LVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQ 568
            +                   V L+  +                                
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP---------------------------- 94

Query: 569 GEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTA 628
            + PD      +L+ + +        LP+++     L  L L +N L   +P S+ +   
Sbjct: 95  -QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR 151

Query: 629 LASLDVDENEFVGNIPTWFGERFSRMLV--------LILRSNQFHGPLPKTICDLAFLQI 680
           L  L +     +  +P       +            L L        LP +I +L  L+ 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKS 210

Query: 681 LDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVT 740
           L + ++ LS A+   I +L  +                     LD+              
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKLEE-------------------LDLRGCTALRNYPPIFG 250

Query: 741 NLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN 800
               L+ +     +    +P  I  +  LE +D         +P  ++ L     + +  
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 801 NNLT 804
           +   
Sbjct: 311 HLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 2e-24
 Identities = 53/304 (17%), Positives = 93/304 (30%), Gaps = 48/304 (15%)

Query: 102 LLDLKHLSYLDLSSNDFQGVQIPRFIG--SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
             +  +      +    +       +   +      L L         P Q   LS LQ 
Sbjct: 52  QANSNNPQIETRTGRALK--ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH 108

Query: 160 LDLSSNYLYV--DNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCS- 216
           + + +  L    D    +   + LE L L    L      +    +L  L EL +  C  
Sbjct: 109 MTIDAAGLMELPDT---MQQFAGLETLTLARNPLRALPASI---ASLNRLRELSIRACPE 162

Query: 217 LHHFPT--LASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT 274
           L   P    ++      Q L +L+ L L+      S+P  +     L+ L +RN+ L   
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-A 220

Query: 275 ISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGC 334
           +  AI +L  +  LDL     L+   P        LK + L+                  
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKD----------------- 262

Query: 335 VSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD 394
             + L +           L   + +   L  L+L     +  +P    QL     + +  
Sbjct: 263 -CSNLLT-----------LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 395 NKLN 398
           +   
Sbjct: 311 HLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (260), Expect = 3e-24
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 23/234 (9%)

Query: 104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLS 163
            L HL ++ + +      ++P  +     L  L L+       +P  + +L+ L+ L + 
Sbjct: 102 RLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIR 158

Query: 164 SNYL---------YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214
           +              D      GL  L+ L L    +      +     L +L  L++ N
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI---ANLQNLKSLKIRN 215

Query: 215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT 274
             L         +   + +L  L+ LDL       + P      +PL+ L L++ S   T
Sbjct: 216 SPLSA-------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 275 ISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEIL 328
           +   I  LT +  LDL   + L  R+P  +A       + +     +Q      
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.3 bits (243), Expect = 5e-22
 Identities = 43/324 (13%), Positives = 95/324 (29%), Gaps = 60/324 (18%)

Query: 506 TQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDN 565
           +    L    +    P   V S       ++ +          +      +    ++   
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRN--------RWHSAWRQANSNNPQIETR 63

Query: 566 YLQG--EIPDCW--MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPI 621
             +      D     +      L+L +       P+    ++ L  + +    L  ++P 
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 622 SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQIL 681
           +++    L +L +  N                              LP +I  L  L+ L
Sbjct: 122 TMQQFAGLETLTLARNPLRA--------------------------LPASIASLNRLREL 155

Query: 682 DLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSL--LDISRNNFSGEILSEV 739
            +        +P+ +++                 E   LV+L  L +        + + +
Sbjct: 156 SIRACPELTELPEPLASTD------------ASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

Query: 740 TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLS 799
            NL+ L+S+    +  +  +  +I  +  LE +D          P        L  L L 
Sbjct: 203 ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 800 NNNLTGKIPLS----TQLQSFNAS 819
           + +    +PL     TQL+  +  
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 1e-19
 Identities = 59/349 (16%), Positives = 112/349 (32%), Gaps = 35/349 (10%)

Query: 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLT 410
           G              L    ++ +    +   Q    +     D     +       N  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQ---WQRHYNADRNRWHSAWRQA--NSN 56

Query: 411 KLSWFRVGGNQLTFEVKH-DWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSR 469
                   G  L       +       VAL L +  +  +FP       HLQ++ +  + 
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAG 115

Query: 470 ISDIFPIRFLKSASQLKFLDVGLNQFH---GKISNLTKNTQLLFLSVNSNNMSGPLPLVS 526
           + ++     ++  + L+ L +  N        I++L +   L  LS+ +      LP   
Sbjct: 116 LMELPDT--MQQFAGLETLTLARNPLRALPASIASLNR---LRELSIRACPELTELP--- 167

Query: 527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKL 586
                   ++   SG              +L+ L+L    ++  +P    + QNLK LK+
Sbjct: 168 -----EPLASTDASGEHQGL--------VNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213

Query: 587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTW 646
            N+  S  L  ++  +  L  L LR        P        L  L + +   +  +P  
Sbjct: 214 RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 647 FGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKC 695
              R +++  L LR       LP  I  L    I+ +   +L   + + 
Sbjct: 273 IH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.8 bits (195), Expect = 6e-16
 Identities = 52/352 (14%), Positives = 105/352 (29%), Gaps = 45/352 (12%)

Query: 261 LECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHL 320
            E L  + ++      D +         D +             AN  N +     G   
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRW-----HSAWRQANSNNPQIETRTG--- 65

Query: 321 SQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES 380
            + +    D+       G  +L++RS  +     DQ  +  +L  + +    ++ L P++
Sbjct: 66  -RALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLMEL-PDT 122

Query: 381 FGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG-NQLTFEVKHDWIPPFQLVAL 439
             Q + L  L +  N L   L     A+L +L    +    +LT       +P       
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRACPELTE------LPE------ 168

Query: 440 GLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFP-IRFLKSASQLKFLDVGLNQFHGK 498
            L +               +LQ L L  + I  +   I  L++   LK L +  +     
Sbjct: 169 PLAST----DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN---LKSLKIRNSPLSAL 221

Query: 499 ISNLTKNTQLLFLSVNSNNMSGPLP-----LVSSNLVYLDFSNNSFSGSISHFLCYRVNE 553
              +    +L  L +         P        + L  L   + S   ++   +      
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKDCSNLLTLPLDIH----R 275

Query: 554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSL 605
              LE L L        +P          ++ +  +  +    +   +  + 
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 37/195 (18%)

Query: 79  ELNLRNPS--TSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYL 136
           EL++R     T  P  +     +     L +L  L L     +   +P  I +++NL+ L
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSL 211

Query: 137 NLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASD 196
            + ++     + P + +L  L+ LDL                + L +             
Sbjct: 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGC-------------TALRNY---PPIFGG--- 251

Query: 197 WLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY 256
                     L  L L +CS      L + +P  +  LT L+ LDL      S +P  + 
Sbjct: 252 -------RAPLKRLILKDCSN-----LLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 257 KFSPLECLNLRNNSL 271
           +      + +  +  
Sbjct: 299 QLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 34/262 (12%), Positives = 75/262 (28%), Gaps = 57/262 (21%)

Query: 593 GNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNI--------- 643
           G+  +     +    LY + +         L       + D +                 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 644 ----------PTWFGERFSRML-VLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAI 692
                          +        L LRS       P     L+ LQ + +    L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 693 PKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSF 752
           P  +    G+ T                   L ++RN     + + + +L  L+ ++   
Sbjct: 120 PDTMQQFAGLET-------------------LTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 753 NTFTGRIPESIG---------TMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL 803
                 +PE +           +  L+S+      +   +P S+++L  L  L + N+ L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218

Query: 804 TGKIPLS----TQLQSFNASSF 821
           +  +  +     +L+  +    
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGC 239

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (291), Expect = 2e-27
 Identities = 57/406 (14%), Positives = 134/406 (33%), Gaps = 34/406 (8%)

Query: 232 QNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLS 291
           QN    K   +  +    ++         ++ L+L  N L    +  +   T +  L+LS
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 292 INIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMRSSSIY 350
            N      +     +  +L    LR + L+   + E+L   S      +E+L   +++I 
Sbjct: 67  SN-----VL-YETLDLESLS--TLRTLDLNNNYVQELLVGPS------IETLHAANNNI- 111

Query: 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLT 410
                   + +    + LANN I  L     G  S ++ L +  N+++        A+  
Sbjct: 112 --SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 411 KLSWFRVGGNQLTFEVKHDWIPPF----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLL 466
            L    +  N +        +       +L  L L +  + +       S   + +++L 
Sbjct: 170 TLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLR 222

Query: 467 NSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN--LTKNTQLLFLSVNSN-NMSGPLP 523
           N+++  I     L+ +  L+  D+  N FH        +KN ++  ++  +   ++G   
Sbjct: 223 NNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 524 LVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKV 583
              +      +         + F    +   +    L          +     +    + 
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 584 LKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTAL 629
           +     ++   +        + + L  +K  L  ++    +    L
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  112 bits (282), Expect = 3e-26
 Identities = 64/419 (15%), Positives = 132/419 (31%), Gaps = 59/419 (14%)

Query: 103 LDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDL 162
            +        ++ +  +         S  N++ L+LS      +    L   + L+ L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 SSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPT 222
           SSN LY      L  LS L  LDL +  + +           PS+  L  +N ++     
Sbjct: 66  SSNVLY--ETLDLESLSTLRTLDLNNNYVQELL-------VGPSIETLHAANNNISRVS- 115

Query: 223 LASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG-TISDAIGN 281
                          K++ L +N             S ++ L+L+ N +     ++   +
Sbjct: 116 --------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 282 LTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES 341
             ++  L+L  N                                 I D+    V   L++
Sbjct: 168 SDTLEHLNLQYN--------------------------------FIYDVKGQVVFAKLKT 195

Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTL 401
           LD+ S+ +   +  +      +  ++L NN +V  I ++      L    +  N  +   
Sbjct: 196 LDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 402 SEFHFANLTKLSWFRVGGNQ-LTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQK-- 458
               F+   ++        + LT + + +   P            + + F   L + K  
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313

Query: 459 HLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNN 517
               L+   S    +   R   + ++ + +D    Q+   I  +T   Q          
Sbjct: 314 EHALLSGQGSETERLECERE--NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (275), Expect = 2e-25
 Identities = 66/466 (14%), Positives = 135/466 (28%), Gaps = 58/466 (12%)

Query: 353 LTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
           + +            + ++S+   +         ++EL +  N L+  +S    A  TKL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472
               +  N L            +     L                  L+ L+L N+ + +
Sbjct: 61  ELLNLSSNVLYE------TLDLE----SLST----------------LRTLDLNNNYVQE 94

Query: 473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVY 531
           +           ++ L    N       +  +  + ++L+ N   M   L     S + Y
Sbjct: 95  LLV------GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 532 LDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKF 591
           LD   N         L      + +LE L L  N++  ++    + +  LK L LS+NK 
Sbjct: 149 LDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKL 203

Query: 592 SGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERF 651
           +  +     S   + W+ LR N+L   I  +L+    L   D+  N F       F  + 
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 652 SRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGS 711
            R  V  +          +   +     +                  L  +         
Sbjct: 262 QR--VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL--------- 310

Query: 712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES 771
                     +LL    +     +  E  N    + I+     +   I +     +A  +
Sbjct: 311 -----KRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364

Query: 772 VDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFN 817
           ++     L  ++     +   L+               + +     
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (265), Expect = 3e-24
 Identities = 67/437 (15%), Positives = 134/437 (30%), Gaps = 38/437 (8%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFL 160
                 ++  LDLS N    +     +     L  LNLS           L +LS L+ L
Sbjct: 29  LRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTL 85

Query: 161 DLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHF 220
           DL++NY+       L     +E L   + N+S+ S      +       + L+N  +   
Sbjct: 86  DLNNNYVQE-----LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITML 135

Query: 221 PTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSP-LECLNLRNNSLQGTISDAI 279
             L           + +++LDL  N  ++     L   S  LE LNL+ N +   +   +
Sbjct: 136 RDLD------EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV 188

Query: 280 GNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGL 339
                +  LDLS N  L   +     +   +  ++LR      ++  I        +  L
Sbjct: 189 -VFAKLKTLDLSSN-KLA-FMGPEFQSAAGVTWISLRN----NKLVLIEKALRFSQN--L 239

Query: 340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL-- 397
           E  D+R +  +   T +    +N     +A  ++  L  ++  + +              
Sbjct: 240 EHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 398 --NGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLH 455
                          + +     G++    ++ +     +   +        +   Q   
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 456 SQKHLQYLNLLNSRISDIFPIRFLKSAS--QLKFLDVGLNQFHGKISNLTKNTQLLFLSV 513
            ++    L      + +         A         VG  +        +    L  +  
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417

Query: 514 NSNNMSGPLPLVSSNLV 530
               M      V +N +
Sbjct: 418 RYEEMYVEQQSVQNNAI 434

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (260), Expect = 2e-23
 Identities = 59/427 (13%), Positives = 114/427 (26%), Gaps = 35/427 (8%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRF---------------IGSMRNLRYLNLSDTQFV 144
             L  L  L  LDL++N  Q + +                      +  + + L++ +  
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133

Query: 145 GMIPPQLGNLSDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNT 203
            +     G  S +Q+LDL  N +  V+     +    LEHL+L+   +      +     
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----V 189

Query: 204 LPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLEC 263
              L  L LS+  L         +    Q+   +  + L +N     I   L     LE 
Sbjct: 190 FAKLKTLDLSSNKLAF-------MGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEH 241

Query: 264 LNLRNNSLQ-GTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ 322
            +LR N    GT+ D       V  +       L G+              +        
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE---EECTVPTLGHYGAYCCED 298

Query: 323 EISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFG 382
             +   D            L  + S     L  +         ++        +I +   
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 383 QLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLH 442
           +      L+     L+  +S        +L                        +   + 
Sbjct: 358 RKQAKITLEQKKKALDEQVSN-GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIV 416

Query: 443 NCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNL 502
             Y      Q       ++  ++   + +        +        D+ L   +  +  L
Sbjct: 417 KRYEEMYVEQQSVQNNAIRDWDMYQHKETQ-LAEENARLKKLNGEADLALASANATLQEL 475

Query: 503 TKNTQLL 509
               Q L
Sbjct: 476 VVREQNL 482

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.1 bits (234), Expect = 3e-20
 Identities = 42/311 (13%), Positives = 93/311 (29%), Gaps = 37/311 (11%)

Query: 522 LPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNL 581
           +    +       +++S   +++           +++ L L+ N L          +  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLR----QSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG 641
           ++L LS+N         L S+++L  L L  N +       L    ++ +L    N    
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-S 112

Query: 642 NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG 701
            +      R      + L +N+            + +Q LDL  N +             
Sbjct: 113 RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID------------ 157

Query: 702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPE 761
            V       S         +  L++  N      +        L++++ S N     +  
Sbjct: 158 TVNFAELAAS------SDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGP 208

Query: 762 SIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSF 821
              +   +  +    N+L   I +++     L H +L  N            ++    + 
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 822 AGNDLCGAPLP 832
           A   +      
Sbjct: 268 AKQTVKKLTGQ 278

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 17/198 (8%), Positives = 50/198 (25%), Gaps = 9/198 (4%)

Query: 97  KVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSD 156
            + P       ++++ L +N      I + +   +NL + +L    F            +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKN 261

Query: 157 LQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCS 216
            +   ++   +           +        +                  L+ L+    +
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA-----PFADRLIALKRKEHA 316

Query: 217 LHHFPTLA-SPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTI 275
           L          +    +N    + +D     + + I     +      L  +  +L   +
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 276 SDAIGNLTSVSWLDLSIN 293
           S+       +        
Sbjct: 377 SNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 16/227 (7%), Positives = 56/227 (24%), Gaps = 11/227 (4%)

Query: 98  VNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDL 157
           +  AL   ++L + DL  N F    +  F    + ++ +         +        +  
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ--TVKKLTGQNEEECTVP 286

Query: 158 QFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNT--LPSLLELRLSNC 215
                 +         +   L  L+  +   ++   +    +           E+     
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 216 SLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTI 275
                               +   L+      +  + +     + L+    +       +
Sbjct: 347 QYRTVIDQV------TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-EL 399

Query: 276 SDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ 322
             A    + +  L   +    +  + +       ++  ++     +Q
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (275), Expect = 8e-26
 Identities = 74/439 (16%), Positives = 137/439 (31%), Gaps = 99/439 (22%)

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
           I   LQ       + +D    +          +  + +  +N++++   +  + +   V 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRS 346
            L+L+                                               +E +D   
Sbjct: 73  LLNLN--------------------------------------------DLQIEEID--- 85

Query: 347 SSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHF 406
                  T        +  L +  N+I  L P  F  +  L  L +  N L+ +L    F
Sbjct: 86  -------TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIF 137

Query: 407 ANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLL 466
            N  KL+   +  N L        I      A                     LQ L L 
Sbjct: 138 HNTPKLTTLSMSNNNLER------IEDDTFQAT------------------TSLQNLQLS 173

Query: 467 NSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS 526
           ++R++ +  +  + S   L   +V  N     +S L     +  L  + N+++     V+
Sbjct: 174 SNRLTHV-DLSLIPS---LFHANVSYNL----LSTLAIPIAVEELDASHNSINVVRGPVN 225

Query: 527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKL 586
             L  L   +N+ +   +  L Y       L  + L+ N L+  +   ++  Q L+ L +
Sbjct: 226 VELTILKLQHNNLT-DTAWLLNY-----PGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTW 646
           SNN+    L      I +L  L L  N L   +  +      L +L +D N  V  +   
Sbjct: 280 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL- 335

Query: 647 FGERFSRMLVLILRSNQFH 665
                  +  L L  N + 
Sbjct: 336 --STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (261), Expect = 4e-24
 Identities = 57/400 (14%), Positives = 137/400 (34%), Gaps = 34/400 (8%)

Query: 90  PRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPP 149
           PR      ++  L        + +             I ++ N + +   ++    +   
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAA 63

Query: 150 QLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLE 209
            L +   ++ L+L+   +   + +  +    ++ L +    +      +     +P L  
Sbjct: 64  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--NVPLLTV 121

Query: 210 LRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNN 269
           L L    L   P           N   L  L + +N+      D     + L+ L L +N
Sbjct: 122 LVLERNDLSSLP------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175

Query: 270 SLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILD 329
            L       +  + S+   ++S N      +  ++A    ++ ++     ++        
Sbjct: 176 RLT---HVDLSLIPSLFHANVSYN------LLSTLAIPIAVEELDASHNSINV------- 219

Query: 330 IFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRE 389
              G V+  L  L ++ +++    T  L  +  LV ++L+ N +  ++   F ++  L  
Sbjct: 220 -VRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276

Query: 390 LQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSR 449
           L I +N+L       +   +  L    +  N L   V+ +     +L  L L +  + + 
Sbjct: 277 LYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333

Query: 450 FPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLD 489
                H+   L+ L L ++           ++ ++    D
Sbjct: 334 KLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAVDD 370

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (253), Expect = 5e-23
 Identities = 66/460 (14%), Positives = 142/460 (30%), Gaps = 132/460 (28%)

Query: 183 HLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDL 242
           H+D+++ ++    + +    TL +   +   N ++   P         L +   ++ L+L
Sbjct: 27  HIDMQTQDVYFGFEDI----TLNNQKIVTFKNSTMRKLP------AALLDSFRQVELLNL 76

Query: 243 DSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPR 302
           +                 ++ L +  N+++        N+  ++ L L            
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE----------- 125

Query: 303 SMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRN 362
                                             N L SL      I+ +          
Sbjct: 126 ---------------------------------RNDLSSLP---RGIFHNTP-------K 142

Query: 363 LVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQL 422
           L TL+++NN++  +  ++F   ++L+ LQ+  N+    L+    + +  L    V  N L
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLL 198

Query: 423 TFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSA 482
           +                              L     ++ L+  ++ I+ +         
Sbjct: 199 ST-----------------------------LAIPIAVEELDASHNSINVVRGPVN---- 225

Query: 483 SQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGS 542
            +L  L +  N      + L     L+ + ++ N +                  + F   
Sbjct: 226 VELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE-------------KIMYHPFVK- 270

Query: 543 ISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSI 602
                       + LE L +++N L   +         LKVL LS+N    ++  +    
Sbjct: 271 -----------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 603 TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGN 642
             L  LYL  N +     + L     L +L +  N++  N
Sbjct: 318 DRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 56/339 (16%), Positives = 114/339 (33%), Gaps = 43/339 (12%)

Query: 500 SNLTKNTQLLFLSVNSNNMSGPLPLVS---SNLVYLDFSNNSFSGSISHFLCYRVNETKS 556
           SNL  +     + ++               +N   + F N++     +  L    +  + 
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL----DSFRQ 70

Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
           +E L L D  ++      +     ++ L +  N      P+   ++  L  L L +N LS
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFH----GPLP--- 669
                   N   L +L +  N     I     +  + +  L L SN+        +P   
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189

Query: 670 ---------KTICDLAFLQILDLADNNLSGAIPKCISNLTGM-------VTVKSFTGSVV 713
                     T+     ++ LD + N+++         LT +                  
Sbjct: 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN--- 246

Query: 714 YREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRIPESIGTMRALESV 772
                P +  +D+S N    +I+      ++ L+ +  S N     +      +  L+ +
Sbjct: 247 ----YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300

Query: 773 DFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLST 811
           D S N L   + ++      L +L L +N++   + LST
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST 337

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (267), Expect = 2e-25
 Identities = 52/312 (16%), Positives = 104/312 (33%), Gaps = 52/312 (16%)

Query: 103 LDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDL 162
            +        ++ +  +   +     S  N++ L+LS      +    L   + L+ L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 SSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPT 222
           SSN         L     LE                     L +L  L L+N  +     
Sbjct: 66  SSNV--------LYETLDLES--------------------LSTLRTLDLNNNYVQE--- 94

Query: 223 LASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNL 282
                   L    S++ L   +N+  S +     +    + + L NN +        G  
Sbjct: 95  --------LLVGPSIETLHAANNNI-SRVS--CSRGQGKKNIYLANNKITMLRDLDEGCR 143

Query: 283 TSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESL 342
           + V +LDL +N           A+   L+ +NL+   +        D+    V   L++L
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-------DVKGQVVFAKLKTL 196

Query: 343 DMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLS 402
           D+ S+ +   +  +      +  ++L NN +V  I ++      L    +  N  +    
Sbjct: 197 DLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 403 EFHFANLTKLSW 414
              F+   ++  
Sbjct: 255 RDFFSKNQRVQT 266

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 7e-23
 Identities = 51/309 (16%), Positives = 110/309 (35%), Gaps = 25/309 (8%)

Query: 232 QNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLS 291
           QN    K   +  +    ++         ++ L+L  N L    +  +   T +  L+LS
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 292 INIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMRSSSIY 350
            N      +     +  +L    LR + L+   + E+L   S      +E+L   +++I 
Sbjct: 67  SN-----VL-YETLDLESLS--TLRTLDLNNNYVQELLVGPS------IETLHAANNNI- 111

Query: 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLT 410
             +     + +    + LANN I  L     G  S ++ L +  N+++        A+  
Sbjct: 112 SRV--SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 411 KLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRI 470
            L    +  N +        +   +L  L L +  + +       S   + +++L N+++
Sbjct: 170 TLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL 226

Query: 471 SDIFPIRFLKSASQLKFLDVGLNQFHGKISN--LTKNTQLLFLSVNSNNMSGPLPLVSSN 528
             I     L+ +  L+  D+  N FH        +KN ++  ++  +             
Sbjct: 227 VLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 529 LVYLDFSNN 537
           +  L     
Sbjct: 285 VPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.2 bits (240), Expect = 8e-22
 Identities = 56/329 (17%), Positives = 112/329 (34%), Gaps = 43/329 (13%)

Query: 353 LTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
           + +            + ++S+   +         ++EL +  N L+  +S    A  TKL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472
               +  N L            +     L                  L+ L+L N+ + +
Sbjct: 61  ELLNLSSNVLYE------TLDLE----SLST----------------LRTLDLNNNYVQE 94

Query: 473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVY 531
           +           ++ L    N       +  +  + ++L+ N   M   L     S + Y
Sbjct: 95  LLV------GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 532 LDFSNNSFSG-SISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK 590
           LD   N     + +         + +LE L L  N++  ++    + +  LK L LS+NK
Sbjct: 149 LDLKLNEIDTVNFAELA----ASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNK 202

Query: 591 FSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGER 650
            +  +     S   + W+ LR N+L   I  +L+    L   D+  N F       F  +
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 651 FSRMLVLILRSNQFHGPLPKTICDLAFLQ 679
             R+  +  ++ +      +  C +  L 
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.4 bits (238), Expect = 1e-21
 Identities = 42/300 (14%), Positives = 92/300 (30%), Gaps = 37/300 (12%)

Query: 527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKL 586
           +       +++S   +++           +++ L L+ N L          +  L++L L
Sbjct: 10  NRYKIEKVTDSSLKQALASLR----QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTW 646
           S+N         L S+++L  L L  N +       L    ++ +L    N     +   
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSC- 116

Query: 647 FGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK 706
              R      + L +N+            + +Q LDL  N +              V   
Sbjct: 117 --SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID------------TVNFA 162

Query: 707 SFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTM 766
               S         +  L++  N      +        L++++ S N     +     + 
Sbjct: 163 ELAAS------SDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 767 RALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDL 826
             +  +    N+L   I +++     L H +L  N            ++    + A   +
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 20/194 (10%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
             L  L  L  LDL++N  Q       +    ++  L+ ++      +          + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNI-SRVSC--SRGQGKKN 124

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
           + L++N + +         S +++LDL+   +   +   +A +   +L  L L    ++ 
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-SDTLEHLNLQYNFIYD 183

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAI 279
                            LK LDL SN   + +       + +  ++LRNN L   I  A+
Sbjct: 184 VKGQV--------VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 280 GNLTSVSWLDLSIN 293
               ++   DL  N
Sbjct: 234 RFSQNLEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 58/416 (13%), Positives = 122/416 (29%), Gaps = 102/416 (24%)

Query: 275 ISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGC 334
           I +   N        ++ +  L+  +     +  N+K ++L G                 
Sbjct: 2   IHEIKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSG----------------- 43

Query: 335 VSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD 394
             N L  +              L  F  L  LNL++N +   +      LSTLR L + +
Sbjct: 44  --NPLSQIS----------AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89

Query: 395 NKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWL 454
           N +              +       N ++       +   +                   
Sbjct: 90  NYVQ------ELLVGPSIETLHAANNNISR------VSCSRG------------------ 119

Query: 455 HSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVN 514
              +  + + L N++I+ +         S++++LD+ LN+                 +VN
Sbjct: 120 ---QGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEID---------------TVN 160

Query: 515 SNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDC 574
              ++         L +L+   N     +   +         L+ L L+ N L   +   
Sbjct: 161 FAELAASSD----TLEHLNLQYNFIY-DVKGQVV-----FAKLKTLDLSSNKLA-FMGPE 209

Query: 575 WMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS-GKIPISLKNCTALASLD 633
           + S   +  + L NNK    +  +L    +L    LR N    G +         + ++ 
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS 689
               + +        E    +  L          LP         +++ L  ++  
Sbjct: 269 KQTVKKLTGQN----EEECTVPTLGHYGAYCCEDLPA----PFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 28/244 (11%)

Query: 571 IPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALA 630
           I +   +    K+ K++++     L +   S  ++  L L  N LS      L   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG 690
            L++  N     +     E  S +  L L +N       + +     ++ L  A+NN+S 
Sbjct: 62  LLNLSSNVLYETLDL---ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 691 AIPKCISNLT---------GMVTVKSFTGSVVYREILPLVSLLDISRNNFSG-EILSEVT 740
                               M+                 V  LD+  N            
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGC-------RSRVQYLDLKLNEIDTVNFAELAA 166

Query: 741 NLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN 800
           +   L+ +N  +N     +   +     L+++D S N+L+  +     S   +  ++L N
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 801 NNLT 804
           N L 
Sbjct: 224 NKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 37/171 (21%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFL 160
                  + YLDL  N+   V       S   L +LNL        +  Q+   + L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196

Query: 161 DLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHF 220
           DLSSN               L  +                  +   +  + L N  L   
Sbjct: 197 DLSSNK--------------LAFMG-------------PEFQSAAGVTWISLRNNKLVL- 228

Query: 221 PTLASPIPRGLQNLTSLKHLDLDSNHFNS-SIPDWLYKFSPLECLNLRNNS 270
                 I + L+   +L+H DL  N F+  ++ D+  K   ++ +  +   
Sbjct: 229 ------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 17/148 (11%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
              +    L  LDLSSN      +     S   + +++L + + V +I   L    +L+ 
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
            DL  N  +   +       F ++  +++V             T+  L       C++  
Sbjct: 242 FDLRGNGFHCGTLRDF----FSKNQRVQTVAK----------QTVKKLTGQNEEECTVPT 287

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHF 247
                +     L    + + + L  +H 
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 741 NLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN 800
           N    +    + ++    +     +   ++ +D S N LS      ++  T L  LNLS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 801 NNLTGKIPLS--TQLQSFNASS 820
           N L   + L   + L++ + ++
Sbjct: 68  NVLYETLDLESLSTLRTLDLNN 89

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (269), Expect = 1e-24
 Identities = 98/533 (18%), Positives = 176/533 (33%), Gaps = 61/533 (11%)

Query: 111 LDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVD 170
           +D S N      +P+ +        LN+S      +    + +LS L+ L +S N +   
Sbjct: 5   VDRSKNGLI--HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 171 NVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRG 230
           ++        LE+LDL    L K S      +   +L  L LS  +         PI + 
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVKISC-----HPTVNLKHLDLSFNAFDAL-----PICKE 110

Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
             N++ LK L L + H   S    +   +  + L +   +           L   +   L
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESL 168

Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY 350
            I                      L     +    E+ +I      N         + + 
Sbjct: 169 HIVF-----------PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217

Query: 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFA--- 407
            +         N+ T   +   I+ L+       +T+    I + KL G L    F    
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLV-----WHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 408 -NLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLL 466
            +L  LS  +V  +   F   + +     +                         +L+  
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 467 NSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS 526
           N+ ++D          ++L+ L + +NQ   ++S + + T  +                 
Sbjct: 333 NNLLTDTVFENC-GHLTELETLILQMNQLK-ELSKIAEMTTQM----------------- 373

Query: 527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKL 586
            +L  LD S NS S       C   + TKSL  L ++ N L   I  C      +KVL L
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDC---SWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDL 428

Query: 587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF 639
            +NK   ++P  +  + +L  L +  N+L           T+L  + +  N +
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (265), Expect = 5e-24
 Identities = 74/400 (18%), Positives = 153/400 (38%), Gaps = 15/400 (3%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQ-FLDLS 163
             +L +LDLS N F  + I +  G+M  L++L LS T         + +L+  +  L L 
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 164 SNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTL 223
             Y   ++   L   +      +   N        ++  T+ +L    +      +  + 
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 224 ASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKF---SPLECLNLRNNSLQGTI--SDA 278
              I   LQ    L +L L++     +    + +    + +   ++ N  LQG +   D 
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 279 IGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNG 338
             + TS+  L +   +      P+S   +    ++N++   +S      +   S      
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYI-YEIFSNMNIKNFTVSGTRMVHMLCPSKISP-- 325

Query: 339 LESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGL--IPESFGQLSTLRELQIYDNK 396
              LD  ++ +   + +  G    L TL L  N +  L  I E   Q+ +L++L I  N 
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 397 LNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHS 456
           ++    +   +    L    +  N LT  +      P ++  L LH+  +    P+ +  
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKI-KSIPKQVVK 442

Query: 457 QKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
            + LQ LN+ ++++  + P       + L+ + +  N + 
Sbjct: 443 LEALQELNVASNQLKSV-PDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.9 bits (241), Expect = 5e-21
 Identities = 86/449 (19%), Positives = 164/449 (36%), Gaps = 48/449 (10%)

Query: 104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGM-IPPQLGNLSDLQFLDL 162
             + L YLDLS N    +          NL++L+LS   F  + I  + GN+S L+FL L
Sbjct: 67  FNQELEYLDLSHNKLVKISCHPT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 163 SSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATN-TLPSLLELRLSNCSLHHFP 221
           S+ +L   +V  ++ L+  + L +      +  D     +    SL  +  +N   H   
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182

Query: 222 TLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGN 281
            ++      L+       L+ +   +  SI   L     L  L L N          I  
Sbjct: 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242

Query: 282 L---TSVSWLDLSINIGLQGRIPRSMAN--FCNLKSVNLRGVHLSQEISEILDIFSGCVS 336
           L   T+V +  +S N+ LQG++     +    +LK++++  V           I+    +
Sbjct: 243 LVWHTTVWYFSIS-NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 337 NGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNK 396
             +++  +  S           +    + L+ +NN +   + E+ G L+ L  L +  N+
Sbjct: 302 MNIKNFTV--SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 397 LNGTLSEFH--FANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWL 454
           L   LS+       +  L    +  N +++                              
Sbjct: 360 LK-ELSKIAEMTTQMKSLQQLDISQNSVSY-----------------------DEKKGDC 395

Query: 455 HSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVN 514
              K L  LN+ ++ ++D           ++K LD+  N+       + K   L  L+V 
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIKSIPKQVVKLEALQELNVA 452

Query: 515 SNNMSGPLPLVS----SNLVYLDFSNNSF 539
           SN +   +P       ++L  +    N +
Sbjct: 453 SNQLKS-VPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 90.7 bits (225), Expect = 5e-19
 Identities = 78/456 (17%), Positives = 142/456 (31%), Gaps = 57/456 (12%)

Query: 362 NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ 421
            L  L +++N I  L    F     L  L +  NKL     +        L    +  N 
Sbjct: 46  KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL----VKISCHPTVNLKHLDLSFNA 101

Query: 422 LTFEVKHDWIPPF-------QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIF 474
                    +P         QL  LGL   ++       +      + L +L     +  
Sbjct: 102 FDA------LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 475 PIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDF 534
               L+  +                     N +  F+   S      L L +   V  D 
Sbjct: 156 DPEGLQDFNTESL-----------HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 535 SNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGN 594
             + F   ++           +L  ++ T N     +   W +   +    +SN K  G 
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT--TVWYFSISNVKLQGQ 262

Query: 595 -----LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGE 649
                   S  S+ +L    +  +          +  + +   +   +     +      
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-TRMVHMLCPS 321

Query: 650 RFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFT 709
           + S  L L   +N     + +    L  L+ L L  N L   + K     T M +++   
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQ-- 378

Query: 710 GSVVYREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRIPESIGTMRA 768
                         LDIS+N+ S +      +  K+L S+N S N  T  I   +     
Sbjct: 379 --------------LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPR 422

Query: 769 LESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
           ++ +D   N++   IP+ +  L  L  LN+++N L 
Sbjct: 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 72/462 (15%), Positives = 142/462 (30%), Gaps = 69/462 (14%)

Query: 361 RNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGN 420
           + L  L+L++N +V +   S      L+ L +  N  +       F N+++L +  +   
Sbjct: 69  QELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125

Query: 421 QLT-FEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQ-YLNLLNSRISDIFPIRF 478
            L    V          V L L   Y     P+ L        ++    ++         
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 479 LKSASQLKFLDVGLNQFHGKISNL------------TKNTQLLFLSVNSNNMSGPLPLVS 526
           +K+ + L+  ++       K S                N  L  +    N+    L LV 
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 527 -SNLVYLDFSNNSFSGSI-SHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVL 584
            + + Y   SN    G +      Y     K+L   ++  +         +  + N+ + 
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 585 KLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIP 644
             + +            I+  + L    N L+  +  +  + T L +L +  N+    + 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELS 364

Query: 645 TWFG--ERFSRMLVLILRSNQFHGPLPKTICD-LAFLQILDLADNNLSGAIPKCISNLTG 701
                  +   +  L +  N       K  C     L  L+++ N L+  I +C      
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC------ 418

Query: 702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPE 761
                          + P + +LD+  N                             IP+
Sbjct: 419 ---------------LPPRIKVLDLHSNKIK-------------------------SIPK 438

Query: 762 SIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL 803
            +  + AL+ ++ + NQL          LT L  + L  N  
Sbjct: 439 QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.9 bits (158), Expect = 6e-11
 Identities = 58/349 (16%), Positives = 114/349 (32%), Gaps = 10/349 (2%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHG-KISNLTKNTQLLFLSVNSN 516
           +    LN+  + IS+++      S S+L+ L +  N+     IS    N +L +L ++ N
Sbjct: 21  QKTTILNISQNYISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 517 NMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW 575
            +   +      NL +LD S N+F  ++    C        L+ L L+  +L+       
Sbjct: 80  KLVK-ISCHPTVNLKHLDLSFNAFD-ALPI--CKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 576 MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD 635
                 KVL +    +          +       L     + K    + + +     +++
Sbjct: 136 AHLNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKC 695
            +     +       F  +L  +  + +        I       I  L     +      
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 696 ISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTF 755
           ISN+  +     F         L  +S+  +  + F             +   NF+ +  
Sbjct: 254 ISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 756 TGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
                     +     +DFS N L+  + ++   LT L  L L  N L 
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 105 LKHLSYLDLSSNDFQGV-QIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQFLDL 162
           L  L  L L  N  + + +I      M++L+ L++S                  L  L++
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 163 SSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPT 222
           SSN L   +  +      ++ LDL S  +      ++    L +L EL +++  L   P 
Sbjct: 407 SSNIL--TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK---LEALQELNVASNQLKSVPD 461

Query: 223 LASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY 256
                      LTSL+ + L +N ++ S P   Y
Sbjct: 462 GI------FDRLTSLQKIWLHTNPWDCSCPRIDY 489

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (257), Expect = 7e-23
 Identities = 58/319 (18%), Positives = 105/319 (32%), Gaps = 60/319 (18%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSS 164
             H++ L +  N+     +P        LR L +S  Q    +P     L +L       
Sbjct: 60  PAHITTLVIPDNNLT--SLPALPP---ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 165 NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLA 224
            +L           S L  L +    L+            P L EL +S+  L   P L 
Sbjct: 114 THLPAL-------PSGLCKLWIFGNQLTSLP------VLPPGLQELSVSDNQLASLPAL- 159

Query: 225 SPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTS 284
                     + L  L   +N   +S+P      S L+ L++ +N L  ++      L  
Sbjct: 160 ---------PSELCKLWAYNNQL-TSLPMLP---SGLQELSVSDNQLA-SLPTLPSELYK 205

Query: 285 VSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM 344
           +   +  +       +P        LK + + G  L+               + L+ L +
Sbjct: 206 LWAYNNRLT-----SLPALP---SGLKELIVSGNRLTSLPVLP---------SELKELMV 248

Query: 345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEF 404
             + +   L         L++L++  N +  L PES   LS+   + +  N     LSE 
Sbjct: 249 SGNRL-TSLPMLPS---GLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNP----LSER 299

Query: 405 HFANLTKLSWFRVGGNQLT 423
               L +++        + 
Sbjct: 300 TLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (255), Expect = 1e-22
 Identities = 78/454 (17%), Positives = 138/454 (30%), Gaps = 72/454 (15%)

Query: 85  PSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFV 144
              S  R+ +V K+   L +    + L++  +      +P  + +  ++  L + D    
Sbjct: 21  AEESRGRAAVVQKMRACLNN--GNAVLNVGESGLT--TLPDCLPA--HITTLVIPDNNLT 74

Query: 145 GMIPPQLGNLSDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNT 203
             +P     L   + L++S N L  +  +    GL  L        +L            
Sbjct: 75  S-LPALPPEL---RTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHL---------PAL 119

Query: 204 LPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLEC 263
              L +L +    L   P L             L+ L +  N   +S+P      S L  
Sbjct: 120 PSGLCKLWIFGNQLTSLPVL----------PPGLQELSVSDNQL-ASLPALP---SELCK 165

Query: 264 LNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQE 323
           L   NN L  ++      L     L +S N  L   +P   +    L + N R   L   
Sbjct: 166 LWAYNNQLT-SLPMLPSGLQE---LSVSDN-QLA-SLPTLPSELYKLWAYNNRLTSLPAL 219

Query: 324 ISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ 383
            S            GL+ L +  + +   L         L  L ++ N +  L P     
Sbjct: 220 PS------------GLKELIVSGNRL-TSLPVLPS---ELKELMVSGNRLTSL-PMLPSG 262

Query: 384 LSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHN 443
           L     L +Y N+L   L E    +L+  +   + GN L+            L  +    
Sbjct: 263 L---LSLSVYRNQLT-RLPE-SLIHLSSETTVNLEGNPLSE------RTLQALREITSAP 311

Query: 444 CYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLT 503
            Y G      +      +    L+   +D          +      +   + +      +
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN--ADAFS 369

Query: 504 KNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNN 537
                L  + N    +G    +SS L  L     
Sbjct: 370 LFLDRLSETENFIKDAGFKAQISSWLAQLAEDEA 403

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.9 bits (228), Expect = 2e-19
 Identities = 74/340 (21%), Positives = 114/340 (33%), Gaps = 71/340 (20%)

Query: 361 RNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGN 420
                LN+  + +  L P+       +  L I DN L  +L       L  L    V GN
Sbjct: 40  NGNAVLNVGESGLTTL-PDCLPA--HITTLVIPDNNLT-SLPA-LPPELRTL---EVSGN 91

Query: 421 QLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLK 480
           QLT                           P        L   +   + +  +       
Sbjct: 92  QLT-------------------------SLPVLPPGLLELSIFSNPLTHLPALP------ 120

Query: 481 SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFS 540
             S L  L +  NQ    +  L    Q L +   S+N    LP + S L  L   NN  +
Sbjct: 121 --SGLCKLWIFGNQLT-SLPVLPPGLQELSV---SDNQLASLPALPSELCKLWAYNNQLT 174

Query: 541 GSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLG 600
            S+             L+ L ++DN L   +P        L  L   NN+ + +LP    
Sbjct: 175 -SLPMLPS-------GLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPA--- 218

Query: 601 SITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR 660
             + L  L +  NRL+  +P+       L  L V  N       T      S +L L + 
Sbjct: 219 LPSGLKELIVSGNRLTS-LPVLPSE---LKELMVSGNRL-----TSLPMLPSGLLSLSVY 269

Query: 661 SNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLT 700
            NQ    LP+++  L+    ++L  N LS    + +  +T
Sbjct: 270 RNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.3 bits (224), Expect = 7e-19
 Identities = 66/357 (18%), Positives = 124/357 (34%), Gaps = 65/357 (18%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNN 517
                LN+  S ++ + P       + L   D  L         L        L V+ N 
Sbjct: 40  NGNAVLNVGESGLTTL-PDCLPAHITTLVIPDNNLTSLPALPPELRT------LEVSGNQ 92

Query: 518 MSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMS 577
           ++  LP++   L+ L   +N  +  +             L  L +  N L   +P     
Sbjct: 93  LTS-LPVLPPGLLELSIFSNPLT-HLPALP-------SGLCKLWIFGNQLT-SLPV---L 139

Query: 578 YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN 637
              L+ L +S+N+ + +LP        L  L+   N+L+  +P+       L  L V +N
Sbjct: 140 PPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSG---LQELSVSDN 191

Query: 638 EFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCIS 697
           +   ++PT        +  L   +N+    LP     L   + L ++ N L+ ++P   S
Sbjct: 192 QLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPSGL---KELIVSGNRLT-SLPVLPS 241

Query: 698 NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTG 757
            L                        L +S N  +  +    + L +L   +   N  T 
Sbjct: 242 ELK----------------------ELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT- 274

Query: 758 RIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQ 814
           R+PES+  + +  +V+   N LS    Q++  +T     +            + +  
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 75/402 (18%), Positives = 128/402 (31%), Gaps = 106/402 (26%)

Query: 234 LTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
                 L++  +   +++PD L   + +  L + +N+L  ++      L +   L++S N
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLPALPPELRT---LEVSGN 91

Query: 294 IGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHL 353
             L   +P        L   +    HL    S            GL  L +  +     L
Sbjct: 92  -QLT-SLPVLPPGLLELSIFSNPLTHLPALPS------------GLCKLWIFGN----QL 133

Query: 354 TDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLS 413
           T        L  L++++N +  L P    +L    +L  Y+N+L  +L     + L +LS
Sbjct: 134 TSLPVLPPGLQELSVSDNQLASL-PALPSEL---CKLWAYNNQLT-SLPM-LPSGLQELS 187

Query: 414 WFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDI 473
              V  NQL                            P        L  L   N+R++ +
Sbjct: 188 ---VSDNQLA-------------------------SLPTLPSE---LYKLWAYNNRLTSL 216

Query: 474 FPIRFLKSASQLKFLDVGLNQFHG---KISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLV 530
                    S LK L V  N+        S L +      L V+ N ++  LP++ S L+
Sbjct: 217 -----PALPSGLKELIVSGNRLTSLPVLPSELKE------LMVSGNRLTS-LPMLPSGLL 264

Query: 531 YLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK 590
            L    N                       +LT       +P+  +   +   + L  N 
Sbjct: 265 SLSVYRN-----------------------QLT------RLPESLIHLSSETTVNLEGNP 295

Query: 591 FSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632
            S     +L  ITS         R       + +   AL   
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 55/266 (20%)

Query: 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR 614
                L + ++ L   +PDC     ++  L + +N  + +LP        L  L +  N+
Sbjct: 40  NGNAVLNVGESGLT-TLPDC--LPAHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQ 92

Query: 615 LSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICD 674
           L+  +P+       L+                          L +  NQ    LP     
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALPSGL--------CKLWIFGNQLTS-LPVLPPG 142

Query: 675 LAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE 734
           L   Q L ++DN L+ ++P   S L                        L    N  +  
Sbjct: 143 L---QELSVSDNQLA-SLPALPSELC----------------------KLWAYNNQLT-S 175

Query: 735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLN 794
           +    + L+ L   + S N     +P     +  L + +   N+L+  +P   S L    
Sbjct: 176 LPMLPSGLQEL---SVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SLPALPSGLK--- 224

Query: 795 HLNLSNNNLTGKIPLSTQLQSFNASS 820
            L +S N LT    L ++L+    S 
Sbjct: 225 ELIVSGNRLTSLPVLPSELKELMVSG 250

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 34/149 (22%)

Query: 672 ICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNF 731
            C      +L++ ++ L+  +P                       +   ++ L I  NN 
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPD---------------------CLPAHITTLVIPDNNL 73

Query: 732 SGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT 791
           +  + +    L+ L     S N  T  +P     +  L      +  L            
Sbjct: 74  T-SLPALPPELRTL---EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG------ 122

Query: 792 FLNHLNLSNNNLTGKIPLSTQLQSFNASS 820
            L  L +  N LT    L   LQ  + S 
Sbjct: 123 -LCKLWIFGNQLTSLPVLPPGLQELSVSD 150

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (253), Expect = 9e-23
 Identities = 77/338 (22%), Positives = 119/338 (35%), Gaps = 29/338 (8%)

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQFLDLSSN 165
           H++Y+DLS N    +        +++L++L +       +I       LS L  L L  N
Sbjct: 31  HVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 166 YLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLAS 225
                     +GL+ LE L L   NL  A         L SL  L L + ++        
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ---- 145

Query: 226 PIPRGL-QNLTSLKHLDLDSNHFNSSIPDWLYKFSPLE----------CLNLRNNSLQGT 274
             P     N+     LDL  N   S   + L  F                ++    L   
Sbjct: 146 --PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203

Query: 275 ISDAIGNLTSVSWLDLSIN-------IGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEI 327
                   TS++ LDLS N             I  +      L +    G        + 
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 328 LD--IFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS 385
            D   F G  ++G+++ D+  S I+  L      F +L  L LA N I  +   +F  L+
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323

Query: 386 TLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
            L +L +  N L G++    F NL KL    +  N + 
Sbjct: 324 HLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.0 bits (239), Expect = 5e-21
 Identities = 74/364 (20%), Positives = 133/364 (36%), Gaps = 46/364 (12%)

Query: 362 NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ 421
           ++  ++L+ NSI  L   SF +L  L+ L++        +    F  L+ L   ++  NQ
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 422 LTFEVKHDWIPP------FQLVALGLHNCYVGSRF--PQWLHSQKHLQYLNLLNSRISDI 473
                    +          L  L L  C +        +      L+ L L ++ I  I
Sbjct: 91  FLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 474 FPIRFLKSASQLKFLDVGLNQF----HGKISNLTKNTQLLFLSVNSNNMSG--------- 520
            P  F  +  +   LD+  N+        + N         L ++S  +           
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWE 203

Query: 521 --PLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG--------- 569
               P  ++++  LD S N F  S++      +  TK ++ L L+++Y  G         
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK-IQSLILSNSYNMGSSFGHTNFK 262

Query: 570 EIPDCW---MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPI-SLKN 625
           +  +     +    +K   LS +K    L +     T L  L L +N ++ KI   +   
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWG 321

Query: 626 CTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLAD 685
            T L  L++ +N   G+I +   E   ++ VL L  N       ++   L  L+ L L  
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380

Query: 686 NNLS 689
           N L 
Sbjct: 381 NQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 73/460 (15%), Positives = 141/460 (30%), Gaps = 76/460 (16%)

Query: 213 SNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ 272
            N  LH  P     +P        + ++DL  N           +   L+ L +   +  
Sbjct: 18  INRGLHQVP----ELP------AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG 67

Query: 273 GTIS-DAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIF 331
             I  +    L+S+  L L  N                   +                 F
Sbjct: 68  LVIRNNTFRGLSSLIILKLDYN---------------QFLQLE-------------TGAF 99

Query: 332 SGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLV---TLNLANNSIVGLIPES-FGQLSTL 387
           +G  +  LE L +   ++ G +      F+ L     L L +N+I  + P S F  +   
Sbjct: 100 NGLAN--LEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 388 RELQIYDNKLNGTLSEFHFANLTK--LSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCY 445
             L +  NK+  ++ E    N      +  R+    L                  ++  +
Sbjct: 157 HVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQD----------------MNEYW 199

Query: 446 VGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKN 505
           +G            +  L+L  +   +    RF  + +  K   + L+  +   S+    
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 506 TQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDN 565
                    +        L +S +   D S +    ++   +    +    LE L L  N
Sbjct: 260 -NFKDPDNFTFK-----GLEASGVKTCDLSKSKIF-ALLKSVF---SHFTDLEQLTLAQN 309

Query: 566 YLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKN 625
            +     + +    +L  L LS N           ++  L  L L  N +      S   
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369

Query: 626 CTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFH 665
              L  L +D N+   ++P    +R + +  + L +N + 
Sbjct: 370 LPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 67/394 (17%), Positives = 135/394 (34%), Gaps = 67/394 (17%)

Query: 155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214
           + + ++DLS N +   N    S L  L+ L +                 L SL+ L+L  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDY 88

Query: 215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSI--PDWLYKFSPLECLNLRNNSLQ 272
                              L +L+ L L   + + ++   ++    + LE L LR+N+++
Sbjct: 89  NQFLQLE------TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 273 GTISDAI-GNLTSVSWLDLSIN----------IGLQGRIPRSMANFCN------------ 309
                +   N+     LDL+ N          +  QG+    +                 
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 310 ------LKSVNLRGVHLSQ-EISEILD--IFSGCVSNGLESLDMRSSSIYG--------- 351
                  K+ ++  + LS     E +    F       ++SL + +S   G         
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 352 ---HLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFAN 408
              + T +  +   + T +L+ + I  L+   F   + L +L +  N++N  + +  F  
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWG 321

Query: 409 LTKLSWFRVGGNQLTFEVKHDWIPPF------QLVALGLHNCYVGSRFPQWLHSQKHLQY 462
           LT L    +  N L        I         +L  L L   ++ +   Q      +L+ 
Sbjct: 322 LTHLLKLNLSQNFLG------SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375

Query: 463 LNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
           L L  +++  + P       + L+ + +  N + 
Sbjct: 376 LALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.0 bits (156), Expect = 8e-11
 Identities = 65/336 (19%), Positives = 104/336 (30%), Gaps = 42/336 (12%)

Query: 505 NTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLT 563
           +   + LS+NS             +L +L     +    I +          SL  LKL 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG---LSSLIILKLD 87

Query: 564 DNYLQGEIPDCWMSYQNLKVLKLSNNKF-SGNLP-NSLGSITSLVWLYLRKNRLSGKIPI 621
            N         +    NL+VL L+        L  N    +TSL  L LR N +    P 
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 622 SL-KNCTALASLDVDENEFVGNIP--TWFGERFSRMLVLILRSNQFHGPLPKTICD---- 674
           S   N      LD+  N+   +I        +     +L L S          +      
Sbjct: 148 SFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 675 ----LAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVS--LLDISR 728
                  +  LDL+ N    ++ K   +      ++S   S  Y            D   
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 729 NNFSGEILSEVT------------------NLKALQSINFSFNTFTGRIPESI-GTMRAL 769
             F G   S V                   +   L+ +  + N    +I ++    +  L
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325

Query: 770 ESVDFSVNQLSGEIPQSM-SSLTFLNHLNLSNNNLT 804
             ++ S N L   I   M  +L  L  L+LS N++ 
Sbjct: 326 LKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 28/211 (13%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIG-SMRNLRYLNLSDTQFVGMIPPQLG--------NLS 155
           ++    LDL+ N  + +     +    ++   L LS      M    LG          +
Sbjct: 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212

Query: 156 DLQFLDLSSNYLY---VDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLP------- 205
            +  LDLS N          +     + ++ L L +     +S                 
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272

Query: 206 ---SLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLE 262
               +    LS   +               + T L+ L L  N  N    +  +  + L 
Sbjct: 273 EASGVKTCDLSKSKIFALL------KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326

Query: 263 CLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
            LNL  N L    S    NL  +  LDLS N
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 9/154 (5%)

Query: 103 LDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDL 162
           L+   +   DLS +    +    F     +L  L L+  +   +       L+ L  L+L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 163 SSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPT 222
           S N+L   +      L  LE LDL   ++    D   +   LP+L EL L    L   P 
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD--QSFLGLPNLKELALDTNQLKSVPD 388

Query: 223 LASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY 256
                      LTSL+ + L +N ++ S P   Y
Sbjct: 389 GI------FDRLTSLQKIWLHTNPWDCSCPRIDY 416

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.3 bits (235), Expect = 4e-21
 Identities = 58/298 (19%), Positives = 111/298 (37%), Gaps = 40/298 (13%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFL 160
              +LK+L  L L +N    +  P     +  L  L LS  Q    +P ++     LQ L
Sbjct: 71  DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQEL 126

Query: 161 DLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHF 220
            +  N +        +GL+ +  ++L +  L  +     A   +  L  +R+++ ++   
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185

Query: 221 PTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIG 280
                 IP+GL    SL  L LD N         L   + L  L L  NS+    + ++ 
Sbjct: 186 ------IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 281 NLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLE 340
           N   +  L L+ N  L  ++P  +A+   ++ V L                     N + 
Sbjct: 238 NTPHLRELHLNNN-KLV-KVPGGLADHKYIQVVYLHN-------------------NNIS 276

Query: 341 SLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSI--VGLIPESFGQLSTLRELQIYDNK 396
           ++        G+ T       +   ++L +N +    + P +F  +     +Q+ + K
Sbjct: 277 AIGSNDFCPPGYNTK----KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 54/326 (16%), Positives = 113/326 (34%), Gaps = 40/326 (12%)

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY 166
           HL  +  S    +  ++P+ +    +   L+L + +   +      NL +L  L L +N 
Sbjct: 32  HLRVVQCSDLGLE--KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 167 LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASP 226
           +   +    + L  LE L L    L +     +      +L ELR+    +         
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKE-----LPEKMPKTLQELRVHENEITKVR----- 137

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSI--PDWLYKFSPLECLNLRNNSLQGTISDAIGNLTS 284
                  L  +  ++L +N   SS            L  + + + ++  TI    G   S
Sbjct: 138 -KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPS 193

Query: 285 VSWLDLSIN-IGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEI-LDIFSGCVSNGLES 341
           ++ L L  N I    ++  +      L   NL  + LS   IS +     +      L  
Sbjct: 194 LTELHLDGNKI---TKVDAAS--LKGLN--NLAKLGLSFNSISAVDNGSLANTPH--LRE 244

Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ------LSTLRELQIYDN 395
           L + ++ +   +   L   + +  + L NN+I  +    F         ++   + ++ N
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 396 KLNGT-LSEFHFANLTKLSWFRVGGN 420
            +    +    F  +   +  ++G  
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 66/337 (19%), Positives = 113/337 (33%), Gaps = 68/337 (20%)

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419
             +   L+L NN I  +    F  L  L  L + +NK++  +S   FA L KL    +  
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 420 NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFL 479
           NQL        +P                         K LQ L +  + I+ +    F 
Sbjct: 110 NQLKE------LPEKMP---------------------KTLQELRVHENEITKVRKSVF- 141

Query: 480 KSASQLKFLDVGLNQFH-GKISN--LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSN 536
              +Q+  +++G N      I N       +L ++ +   N++     +  +L  L    
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 201

Query: 537 NSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP 596
           N  +                    K+    L+G          NL  L LS N  S    
Sbjct: 202 NKIT--------------------KVDAASLKG--------LNNLAKLGLSFNSISAVDN 233

Query: 597 NSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN--EFVGN---IPTWFGERF 651
            SL +   L  L+L  N+L  K+P  L +   +  + +  N    +G+    P  +  + 
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 652 SRMLVLILRSNQFHGPL--PKTICDLAFLQILDLADN 686
           +    + L SN        P T   +     + L + 
Sbjct: 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 49/275 (17%), Positives = 98/275 (35%), Gaps = 23/275 (8%)

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
           +P+ L        LDL +N               L  L L NN +      A   L  + 
Sbjct: 46  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103

Query: 287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRS 346
            L LS N  L+  +P  M     L+ + +    ++ ++ +   +F+G     +  +++ +
Sbjct: 104 RLYLSKN-QLK-ELPEKM--PKTLQELRVHENEIT-KVRK--SVFNGLNQ--MIVVELGT 154

Query: 347 SSIYGHL--TDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEF 404
           + +             + L  + +A+ +I  +         +L EL +  NK+   +   
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKIT-KVDAA 210

Query: 405 HFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLN 464
               L  L+   +  N ++            L  L L+N  +  + P  L   K++Q + 
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVY 269

Query: 465 LLNSRISDI-----FPIRFLKSASQLKFLDVGLNQ 494
           L N+ IS I      P  +    +    + +  N 
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 55/267 (20%), Positives = 100/267 (37%), Gaps = 29/267 (10%)

Query: 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR 614
                L L +N +       + + +NL  L L NNK S   P +   +  L  LYL KN+
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 615 LSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPL--PKTI 672
           L  ++P  +     L  L V ENE      + F    ++M+V+ L +N            
Sbjct: 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 673 CDLAFLQILDLADNNLSGAIPKCISNLT---------GMVTVKSFTGSVVYREILPLVSL 723
             +  L  + +AD N++        +LT           V   S  G       L  ++ 
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG-------LNNLAK 220

Query: 724 LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG-- 781
           L +S N+ S      + N   L+ ++ + N    ++P  +   + ++ V    N +S   
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279

Query: 782 ----EIPQSMSSLTFLNHLNLSNNNLT 804
                 P   +     + ++L +N + 
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 47/195 (24%), Positives = 72/195 (36%), Gaps = 10/195 (5%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGS-MRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
               L  L+ L LSSN                +L+YL+LS    V  +      L  L+ 
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH 105

Query: 160 LDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLH 218
           LD   + L  +        L  L +LD+   +   A +     N L SL  L+++  S  
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSF- 162

Query: 219 HFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDA 278
                 + +P     L +L  LDL         P      S L+ LN+ +N+     +  
Sbjct: 163 ----QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 279 IGNLTSVSWLDLSIN 293
              L S+  LD S+N
Sbjct: 219 YKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 11/197 (5%)

Query: 99  NPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDL 157
           + +      L YLDLS N      +      +  L +L+   +    M    +  +L +L
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 158 QFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSL 217
            +LD+S  +  V      +GLS LE L +   +  +     + T  L +L  L LS C L
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQL 187

Query: 218 HHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISD 277
                 A        +L+SL+ L++  N+F S         + L+ L+   N +  +   
Sbjct: 188 EQLSPTA------FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

Query: 278 AIGNL-TSVSWLDLSIN 293
            + +  +S+++L+L+ N
Sbjct: 242 ELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.0 bits (216), Expect = 8e-19
 Identities = 61/294 (20%), Positives = 103/294 (35%), Gaps = 46/294 (15%)

Query: 109 SYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLY 168
           + +  +S       +P  I S  +   L L   +   +       L+ L  L LSSN L 
Sbjct: 10  TEIRCNSKGLT--SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 169 VDNVW--WLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASP 226
                     G + L++LDL    +   S        L  L  L   + +L      +  
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSV- 121

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTI-SDAIGNLTSV 285
                 +L +L +LD+   H   +        S LE L +  NS Q     D    L ++
Sbjct: 122 ----FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 286 SWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR 345
           ++LDLS    L+ ++  +   F +L S  L+ +++S               N   SLD  
Sbjct: 178 TFLDLSQC-QLE-QLSPTA--FNSLSS--LQVLNMS--------------HNNFFSLD-- 215

Query: 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLST-LRELQIYDNKLN 398
            +  Y  L        +L  L+ + N I+    +      + L  L +  N   
Sbjct: 216 -TFPYKCLN-------SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 57/270 (21%), Positives = 97/270 (35%), Gaps = 25/270 (9%)

Query: 236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN-I 294
           S   +  +S    +S+P  +   S    L L +N LQ         LT ++ L LS N +
Sbjct: 8   SGTEIRCNSKGL-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 295 GLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLT 354
             +G   +S     +LK ++L        +  +   F G     LE LD + S++   ++
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLS----FNGVITMSSNFLGLEQ--LEHLDFQHSNL-KQMS 117

Query: 355 DQ--LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
           +       RNL+ L++++          F  LS+L  L++  N          F  L  L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 413 SWFRVGGNQLTFEVKHDWIPP------FQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLL 466
           ++  +   QL        + P        L  L + +    S           LQ L+  
Sbjct: 178 TFLDLSQCQLEQ------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

Query: 467 NSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
            + I            S L FL++  N F 
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 10/177 (5%)

Query: 98  VNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDL 157
           ++   L L+ L +LD   ++ + +       S+RNL YL++S T            LS L
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 158 QFLDLSSNYLYVDNVW-WLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCS 216
           + L ++ N    + +    + L  L  LDL    L + S    A N+L SL  L +S+ +
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSHNN 210

Query: 217 LHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKF-SPLECLNLRNNSLQ 272
                T         + L SL+ LD   NH  +S    L  F S L  LNL  N   
Sbjct: 211 FFSLDTFP------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 25/229 (10%)

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK--IPISLKNCTALASLDVDEN 637
           +   L+L +NK           +T L  L L  N LS K     S    T+L  LD+  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 638 EFVGNIPTWFGERFSRMLVLILRSNQFHG-PLPKTICDLAFLQILDLADNNLSGAIPKCI 696
             V  + + F     ++  L  + +             L  L  LD++  +         
Sbjct: 89  G-VITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------- 139

Query: 697 SNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTF 755
                +     F G       L  + +L ++ N+F    L ++ T L+ L  ++ S    
Sbjct: 140 -----VAFNGIFNG-------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 756 TGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
               P +  ++ +L+ ++ S N            L  L  L+ S N++ 
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 44/242 (18%), Positives = 87/242 (35%), Gaps = 16/242 (6%)

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN-GTLSEFHFANLTKLSWFRVG 418
             +   L L +N +  L    F +L+ L +L +  N L+            T L +  + 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQ-WLHSQKHLQYLNLLNSRISDIFPIR 477
            N +   +  +++   QL  L   +  +          S ++L YL++ ++         
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNG 144

Query: 478 FLKSASQLKFLDVGLNQFHGKISN--LTKNTQLLFLSVNSNNMSGPLPLVSSNLV---YL 532
                S L+ L +  N F         T+   L FL ++   +    P   ++L     L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 533 DFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMS--YQNLKVLKLSNNK 590
           + S+N+F    +           SL+ L  + N++        +     +L  L L+ N 
Sbjct: 205 NMSHNNFFSLDTFPY----KCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQND 259

Query: 591 FS 592
           F+
Sbjct: 260 FA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 51/253 (20%), Positives = 87/253 (34%), Gaps = 26/253 (10%)

Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK--FSGNLPNSLGSITSLVWLYLRKN 613
           S   L+L  N LQ      +     L  L LS+N   F G    S    TSL +L L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 614 RLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC 673
            +   +  +      L  LD   +                ++ L +              
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 674 DLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG 733
            L+ L++L +A N+                    FT        L  ++ LD+S+     
Sbjct: 148 GLSSLEVLKMAGNSFQENFLP-----------DIFTE-------LRNLTFLDLSQCQLE- 188

Query: 734 EILSEV-TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSM--SSL 790
           ++      +L +LQ +N S N F          + +L+ +D+S+N +     +       
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFP 247

Query: 791 TFLNHLNLSNNNL 803
           + L  LNL+ N+ 
Sbjct: 248 SSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 7/193 (3%)

Query: 500 SNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFS-GSISHFLCYRVNETKSL 557
           + +  +   L L  N             + L  L  S+N  S         +    T SL
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG---TTSL 80

Query: 558 EGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSL-GSITSLVWLYLRKNRLS 616
           + L L+ N +   +   ++  + L+ L   ++        S+  S+ +L++L +      
Sbjct: 81  KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLA 676
                     ++L  L +  N F  N           +  L L   Q     P     L+
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199

Query: 677 FLQILDLADNNLS 689
            LQ+L+++ NN  
Sbjct: 200 SLQVLNMSHNNFF 212

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 15/219 (6%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQF 159
               L HL  L L  N  + +++  F G + +L  L L D   + +IP      LS L+ 
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELFDNW-LTVIPSGAFEYLSKLRE 151

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVN-LSKASDWLMATNTLPSLLELRLSNCSLH 218
           L L +N +     +  + +  L  LDL  +  L   S+   A   L +L  L L  C++ 
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMCNIK 209

Query: 219 HFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDA 278
             P L          L  L+ L++  NHF    P   +  S L+ L + N+ +     +A
Sbjct: 210 DMPNLT--------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 279 IGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRG 317
              L S+  L+L+ N  L             L  ++L  
Sbjct: 262 FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 59/317 (18%), Positives = 99/317 (31%), Gaps = 70/317 (22%)

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY 166
             S +  +       ++P+ I    N RYLNL +     +      +L  L+ L L  N 
Sbjct: 55  QFSKVVCTRRGLS--EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN- 109

Query: 167 LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASP 226
                      +  +E                     L SL  L L +  L   P     
Sbjct: 110 ----------SIRQIEVGAFNG---------------LASLNTLELFDNWLTVIP----- 139

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNL-RNNSLQGTISDAIGNLTSV 285
                + L+ L+ L L +N   S       +   L  L+L     L+     A   L ++
Sbjct: 140 -SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 286 SWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR 345
            +L+L +       I + M N   L  V L  + +S               N    +   
Sbjct: 199 KYLNLGMC-----NI-KDMPNLTPL--VGLEELEMS--------------GNHFPEIR-- 234

Query: 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFH 405
                           +L  L + N+ +  +   +F  L++L EL +  N L+ +L    
Sbjct: 235 --------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDL 285

Query: 406 FANLTKLSWFRVGGNQL 422
           F  L  L    +  N  
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 8e-15
 Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 21/225 (9%)

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF 639
           N + L L  N       ++   +  L  L L +N +      +     +L +L++ +N  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 640 VGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNL 699
                  F E  S++  L LR+N            +  L  LDL +      I +     
Sbjct: 136 TVIPSGAF-EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE----- 189

Query: 700 TGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRI 759
                  +F G       L  +  L++   N     +  +T L  L+ +  S N F    
Sbjct: 190 ------GAFEG-------LFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIR 234

Query: 760 PESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
           P S   + +L+ +    +Q+S     +   L  L  LNL++NNL+
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 52/280 (18%), Positives = 99/280 (35%), Gaps = 28/280 (10%)

Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
           +   L L +N +Q    D +    +L+VL+L  N        +   + SL  L L  N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLIL-RSNQFHGPLPKTICD 674
           +     + +  + L  L +  N         F  R   ++ L L    +           
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 675 LAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE 734
           L  L+ L+L   N+                + + T        L  +  L++S N+F  E
Sbjct: 195 LFNLKYLNLGMCNIK--------------DMPNLTP-------LVGLEELEMSGNHFP-E 232

Query: 735 ILSEV-TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL 793
           I       L +L+ +    +  +     +   + +L  ++ + N LS       + L +L
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292

Query: 794 NHLNLSNNNLT---GKIPLSTQLQSFNASSFAGNDLCGAP 830
             L+L +N        + L+  L+ +  ++      C AP
Sbjct: 293 VELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAP 332

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 55/291 (18%), Positives = 96/291 (32%), Gaps = 55/291 (18%)

Query: 236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIG 295
               +        S +P  +   S    LNL  N++Q   +D   +L  +  L L  N  
Sbjct: 55  QFSKVVCTRRGL-SEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-- 109

Query: 296 LQGRIPRSMAN-FCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLT 354
               I +     F  L   +L  + L                N L  +           +
Sbjct: 110 ---SIRQIEVGAFNGLA--SLNTLELF--------------DNWLTVIP----------S 140

Query: 355 DQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSW 414
                   L  L L NN I  +   +F ++ +L  L + + K    +SE  F  L  L +
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 415 FRVGGNQLTFEVKHDWIPPF----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRI 470
             +G   +        +P       L  L +   +     P   H    L+ L ++NS++
Sbjct: 201 LNLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 471 SDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNT-----QLLFLSVNSN 516
           S I         + L  L++  N     +S+L  +       L+ L ++ N
Sbjct: 255 SLI-ERNAFDGLASLVELNLAHNN----LSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 65/298 (21%), Positives = 97/298 (32%), Gaps = 54/298 (18%)

Query: 205 PSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECL 264
               ++  +   L   P     IP   +      +L+L  N+      D       LE L
Sbjct: 54  NQFSKVVCTRRGLSEVP---QGIPSNTR------YLNLMENNIQMIQADTFRHLHHLEVL 104

Query: 265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-E 323
            L  NS++     A   L S++ L+L  N  L   IP     F  L    LR + L    
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDN-WLT-VIPSGA--FEYL--SKLRELWLRNNP 158

Query: 324 ISEI-LDIFSGCVSNGLESLDMRSSSIYGHLTD-QLGQFR---NLVTLNLANNSIVGLIP 378
           I  I    F+   S  L  LD+        L     G F    NL  LNL   +I  +  
Sbjct: 159 IESIPSYAFNRVPS--LMRLDLGE---LKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-- 211

Query: 379 ESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVA 438
            +   L  L EL++  N     +    F  L+ L    V  +Q++       I       
Sbjct: 212 PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL------IERNAFDG 264

Query: 439 LGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
           L                    L  LNL ++ +S + P         L  L +  N ++
Sbjct: 265 L------------------ASLVELNLAHNNLSSL-PHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFL 160
           A   L +L YL+L   + +   +P     +  L  L +S   F  + P     LS L+ L
Sbjct: 191 AFEGLFNLKYLNLGMCNIK--DMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 161 DLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLH 218
            + ++ + +       GL+ L  L+L   NLS     L     L  L+EL L +   +
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP--LRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQ 158
           P L  L  L  L++S N F  ++ P     + +L+ L + ++Q V +I       L+ L 
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLV 269

Query: 159 FLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
            L+L+ N L        + L +L  L L  
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 54/327 (16%), Positives = 107/327 (32%), Gaps = 41/327 (12%)

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY 166
           HL  +  S    +   +P+ I    +   L+L +     +       L  L  L L +N 
Sbjct: 34  HLRVVQCSDLGLK--AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 167 LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASP 226
           +   +    S L  L+ L +   +L +     +  N   SL+ELR+ +  +   P     
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVE-----IPPNLPSSLVELRIHDNRIRKVPKGV-- 142

Query: 227 IPRGLQNLTSLKHLDLDSNHF-NSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSV 285
                  L ++  +++  N   NS      +    L  L +    L G   D    L   
Sbjct: 143 ----FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN-- 196

Query: 286 SWLDLSINIGLQGRI----PRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES 341
             L L  N     +I       +  +  L  + L    +   I       S   +  L  
Sbjct: 197 -ELHLDHN-----KIQAIELEDLLRYSKLYRLGLGHNQIR-MIEN--GSLSFLPT--LRE 245

Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESF------GQLSTLRELQIYDN 395
           L + ++ +   +   L   + L  + L  N+I  +    F       + +    + +++N
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 396 KL-NGTLSEFHFANLTKLSWFRVGGNQ 421
            +    +    F  +T     + G  +
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 9e-17
 Identities = 64/299 (21%), Positives = 111/299 (37%), Gaps = 43/299 (14%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFL 160
               L+HL  L L +N    +   +    +R L+ L +S    V  IPP L   S L  L
Sbjct: 73  DFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVEL 128

Query: 161 DLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHF 220
            +  N +        SGL  +  +++    L  +     A + L  L  LR+S   L   
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186

Query: 221 PTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDW-LYKFSPLECLNLRNNSLQGTISDAI 279
                 IP+ L    +L  L LD N    +I    L ++S L  L L +N ++   + ++
Sbjct: 187 ------IPKDL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 280 GNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGL 339
             L ++  L L  N  L  R+P  + +   L+ V L                    +N +
Sbjct: 238 SFLPTLRELHLDNN-KLS-RVPAGLPDLKLLQVVYLH-------------------TNNI 276

Query: 340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSI--VGLIPESFGQLSTLRELQIYDNK 396
             + +      G    +         ++L NN +    + P +F  ++    +Q  + K
Sbjct: 277 TKVGVNDFCPVGFGVKRA----YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 64/369 (17%), Positives = 117/369 (31%), Gaps = 85/369 (23%)

Query: 236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIG 295
            L+ +         ++P  +        L+L+NN +     D    L  +  L L  N  
Sbjct: 34  HLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 296 LQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTD 355
              +I      F  L+   L+ +++S               N L  +             
Sbjct: 91  --SKIHEKA--FSPLR--KLQKLYIS--------------KNHLVEI------------- 117

Query: 356 QLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL-NGTLSEFHFANLTKLSW 414
                 +LV L + +N I  +    F  L  +  +++  N L N       F  L KL++
Sbjct: 118 PPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176

Query: 415 FRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIF 474
            R+   +LT       IP                         + L  L+L +++I  I 
Sbjct: 177 LRISEAKLTG------IPKDLP---------------------ETLNELHLDHNKIQAI- 208

Query: 475 PIRFLKSASQLKFLDVGLNQFHGKISNLTKNT-----QLLFLSVNSNNMSG-PLPLVS-S 527
            +  L   S+L  L +G NQ    I  +   +      L  L +++N +S  P  L    
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQ----IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264

Query: 528 NLVYLDFSNNSFS----GSISHFLCYRVNETKSLEGLKLTDNYLQ-GEIPDCWMSY-QNL 581
            L  +    N+ +                +     G+ L +N +   E+         + 
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCP--VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 582 KVLKLSNNK 590
             ++  N K
Sbjct: 323 LAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 48/268 (17%), Positives = 94/268 (35%), Gaps = 32/268 (11%)

Query: 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR 614
                L L +N +     D +   Q+L  L L NNK S     +   +  L  LY+ KN 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 615 LSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQF-HGPLPKTIC 673
           L  +IP +L   ++L  L + +N     +P         M  + +  N   +        
Sbjct: 114 LV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 674 DLAFLQILDLADNNLSGAIPKCISNLT---------GMVTVKSFTGSVVYREILPLVSLL 724
           D   L  L +++  L+G        L            + ++              +  L
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR-------YSKLYRL 222

Query: 725 DISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEI 783
            +  N     I +   + L  L+ ++   N  + R+P  +  ++ L+ V    N ++ ++
Sbjct: 223 GLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KV 279

Query: 784 PQSM-------SSLTFLNHLNLSNNNLT 804
             +            + N ++L NN + 
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 9e-11
 Identities = 34/175 (19%), Positives = 51/175 (29%), Gaps = 11/175 (6%)

Query: 98  VNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSD 156
             P   D   L+YL +S        IP+       L  L+L   +    I  + L   S 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLT--GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSK 218

Query: 157 LQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCS 216
           L  L L  N + +     LS L  L  L L +  LS+    L     L  L  + L   +
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL---PDLKLLQVVYLHTNN 275

Query: 217 LHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSI--PDWLYKFSPLECLNLRNN 269
           +                      + L +N        P      +    +   N 
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 51/315 (16%), Positives = 100/315 (31%), Gaps = 47/315 (14%)

Query: 500 SNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISH--FLCYRVNETKS 556
             ++ +T LL L  N  +           +L  L   NN  S  I    F     +  + 
Sbjct: 50  KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAF-----SPLRK 103

Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL- 615
           L+ L ++ N+L  EIP       +L  L++ +N+           + ++  + +  N L 
Sbjct: 104 LQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDL 675
           +        +   L  L + E +    IP    +    +  L L  N+      + +   
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLT-GIPK---DLPETLNELHLDHNKIQAIELEDLLRY 216

Query: 676 AFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI 735
           + L  L L  N +       +S L  +                     L +  N  S  +
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRE-------------------LHLDNNKLS-RV 256

Query: 736 LSEVTNLKALQSINFSFNTFTGRIPESI-------GTMRALESVDFSVNQLS-GEIPQSM 787
            + + +LK LQ +    N  T ++  +                +    N +   E+  + 
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 788 -SSLTFLNHLNLSNN 801
              +T    +   N 
Sbjct: 316 FRCVTDRLAIQFGNY 330

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 15/219 (6%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQF 159
           +   L+HL  L LS N  + ++I  F G + NL  L L D + +  IP      LS L+ 
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNR-LTTIPNGAFVYLSKLKE 140

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVN-LSKASDWLMATNTLPSLLELRLSNCSLH 218
           L L +N +     +  + +  L  LDL  +  LS  S+   A   L +L  L L+ C+L 
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLR 198

Query: 219 HFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDA 278
             P L          L  L  LDL  NH ++  P        L+ L +  + +Q    +A
Sbjct: 199 EIPNLT--------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 279 IGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRG 317
             NL S+  ++L+ N  L            +L+ ++L  
Sbjct: 251 FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 64/268 (23%), Positives = 97/268 (36%), Gaps = 45/268 (16%)

Query: 131 RNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVN 190
            N R LNL + Q   +      +L  L+ L LS N++    +   +GL+ L  L+L    
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 191 LSK-ASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS 249
           L+   +   +    L  L EL L N  +   P            + SL+ LDL      S
Sbjct: 124 LTTIPNGAFVY---LSKLKELWLRNNPIESIP------SYAFNRIPSLRRLDLGELKRLS 174

Query: 250 SIP-DWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
            I        S L  LNL   +L       +  L  +  LDLS N               
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGN--------------- 217

Query: 309 NLKSVNLRGVHLSQEISEI-LDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
                          +S I    F G +   L+ L M  S I     +     ++LV +N
Sbjct: 218 --------------HLSAIRPGSFQGLMH--LQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDN 395
           LA+N++  L  + F  L  L  + ++ N
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 7e-16
 Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 14/195 (7%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQF 159
           A   L +L+ L+L  N    +    F+  +  L+ L L +      IP      +  L+ 
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVY-LSKLKELWLRNNPIE-SIPSYAFNRIPSLRR 164

Query: 160 LDLSS-NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLH 218
           LDL     L   +     GLS L +L+L   NL +  +       L  L EL LS   L 
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL----TPLIKLDELDLSGNHLS 220

Query: 219 HFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDA 278
                    P   Q L  L+ L +  +       +       L  +NL +N+L     D 
Sbjct: 221 AIR------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 279 IGNLTSVSWLDLSIN 293
              L  +  + L  N
Sbjct: 275 FTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 12/173 (6%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQF 159
           A + L  L  L L +N  + +    F   + +LR L+L + + +  I       LS+L++
Sbjct: 131 AFVYLSKLKELWLRNNPIESIPSYAFNR-IPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
           L+L+   L       L+ L  L+ LDL   +LS       +   L  L +L +    +  
Sbjct: 190 LNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPG--SFQGLMHLQKLWMIQSQIQV 245

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ 272
                        NL SL  ++L  N+      D       LE ++L +N   
Sbjct: 246 IE------RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 21/225 (9%)

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF 639
           N ++L L  N+      NS   +  L  L L +N +      +      L +L++ +N  
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR- 123

Query: 640 VGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNL 699
           +  IP       S++  L LR+N            +  L+ LDL +      I +     
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE----- 178

Query: 700 TGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRI 759
                  +F G       L  +  L+++  N     +  +T L  L  ++ S N  +   
Sbjct: 179 ------GAFEG-------LSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIR 223

Query: 760 PESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
           P S   +  L+ +    +Q+      +  +L  L  +NL++NNLT
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 7e-15
 Identities = 58/279 (20%), Positives = 94/279 (33%), Gaps = 53/279 (18%)

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419
             N   LNL  N I  +   SF  L  L  LQ+  N +  T+    F  L  L+   +  
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 420 NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFL 479
           N+LT       IP                           L+ L L N+ I  I P    
Sbjct: 122 NRLTT------IPN------------------GAFVYLSKLKELWLRNNPIESI-PSYAF 156

Query: 480 KSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNS-NNMSGPLPLVSSNLVYLDFSNNS 538
                L+ LD            L +  +L ++S  +   +S        NL YL+ +  +
Sbjct: 157 NRIPSLRRLD------------LGELKRLSYISEGAFEGLS--------NLRYLNLAMCN 196

Query: 539 FSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNS 598
               I +           L+ L L+ N+L    P  +    +L+ L +  ++      N+
Sbjct: 197 LR-EIPNL-----TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 599 LGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN 637
             ++ SLV + L  N L+            L  + +  N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 61/332 (18%), Positives = 109/332 (32%), Gaps = 58/332 (17%)

Query: 198 LMATNTLPSLLELRLSNCSLHHFPTLASPI---PRGLQNLTSLKHLDLDSNHFNSSIPDW 254
           ++ +  +P+LL + L +  L             P           +     +    +PD 
Sbjct: 3   ILPSPGMPALLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNL-REVPDG 61

Query: 255 LYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMAN-FCNLKSV 313
           +   +    LNL  N +Q    ++  +L  +  L LS N      I       F  L   
Sbjct: 62  I--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-----HIRTIEIGAFNGLA-- 112

Query: 314 NLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSI 373
           NL  + L                N L ++                    L  L L NN I
Sbjct: 113 NLNTLELF--------------DNRLTTIP----------NGAFVYLSKLKELWLRNNPI 148

Query: 374 VGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPP 433
             +   +F ++ +LR L + + K    +SE  F  L+ L +  +    L        IP 
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE------IPN 202

Query: 434 F----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLD 489
                +L  L L   ++ +  P       HLQ L ++ S+I  I       +   L  ++
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEIN 261

Query: 490 VGLNQFHGKISNLTKNT-----QLLFLSVNSN 516
           +  N     ++ L  +       L  + ++ N
Sbjct: 262 LAHNN----LTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
           P L  L  L  LDLS N    ++   F G + +L+ L +  +Q   +      NL  L  
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
           ++L+ N L +      + L  LE + L  
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.3 bits (219), Expect = 7e-19
 Identities = 57/292 (19%), Positives = 105/292 (35%), Gaps = 32/292 (10%)

Query: 108 LSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQFLDLSSNY 166
           +  LDLS+N    +          NL+ L L+    +  I      +L  L+ LDLS NY
Sbjct: 54  VKSLDLSNNRITYISNSDLQR-CVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY 111

Query: 167 LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASP 226
           L   +  W   LS L  L+L         +     + L  L  LR+ N            
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDT-----FTKI 165

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
             +    LT L+ L++D++   S  P  L     +  L L        +   +   +SV 
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRS 346
            L+L                       +L   H S+  +   +      +    ++ +  
Sbjct: 226 CLELRDT--------------------DLDTFHFSELSTGETNSLIKKFT--FRNVKITD 263

Query: 347 SSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLN 398
            S++  +   L Q   L+ L  + N +  +    F +L++L+++ ++ N  +
Sbjct: 264 ESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 67/327 (20%), Positives = 115/327 (35%), Gaps = 38/327 (11%)

Query: 96  GKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLS 155
              N A L          SS       IP  +     ++ L+LS+ +   +    L    
Sbjct: 21  ESSNQASLSCDRNGICKGSSGSLN--SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCV 76

Query: 156 DLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSK-ASDWLMATNTLPSLLELRLSN 214
           +LQ L L+SN +        S L  LEHLDL    LS  +S W      L SL  L L  
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF---KPLSSLTFLNLLG 133

Query: 215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPD-WLYKFSPLECLNLRNNSLQG 273
                    +        +LT L+ L + +    + I        + LE L +  + LQ 
Sbjct: 134 NPYKTLGETSL-----FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 274 TISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG 333
               ++ ++ +VS L L +       +   +    +++ + LR   L             
Sbjct: 189 YEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLD------------ 235

Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393
                        S +    T+ L +      + + + S+   + +   Q+S L EL+  
Sbjct: 236 ---------TFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFS 285

Query: 394 DNKLNGTLSEFHFANLTKLSWFRVGGN 420
            N+L  ++ +  F  LT L    +  N
Sbjct: 286 RNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 46/265 (17%), Positives = 99/265 (37%), Gaps = 19/265 (7%)

Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
           +++ L L++N +            NL+ L L++N  +    +S  S+ SL  L L  N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP-KTICD 674
           S       K  ++L  L++  N +     T      +++ +L + +      +  K    
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 675 LAFLQILDLADNNLSGAIPKCISNLTGMVTV-------KSFTGSVVYREILPLVSLLDIS 727
           L FL+ L++  ++L    PK + ++  +  +                 ++   V  L++ 
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELR 230

Query: 728 RNNFSGEILSEV--------TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQL 779
             +      SE+              +++  +  +   ++ + +  +  L  ++FS NQL
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQL 289

Query: 780 SGEIPQSMSSLTFLNHLNLSNNNLT 804
                     LT L  + L  N   
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 55/322 (17%), Positives = 104/322 (32%), Gaps = 63/322 (19%)

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
           IP GL    ++K LDL +N         L +   L+ L L +N +     D+  +L S+ 
Sbjct: 46  IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRS 346
            LDLS N  L   +  S   F  L   +L  ++L                N  ++L    
Sbjct: 104 HLDLSYN-YLS-NLSSSW--FKPLS--SLTFLNLL--------------GNPYKTL---- 139

Query: 347 SSIYGHLTDQLGQFRNLVTLN----LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLS 402
                    +   F +L  L        ++   +  + F  L+ L EL+I  + L  +  
Sbjct: 140 --------GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYE 190

Query: 403 EFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQY 462
                ++  +S   +   Q         +                +   + L     L+ 
Sbjct: 191 PKSLKSIQNVSHLILHMKQHIL------LLE---------IFVDVTSSVECL----ELRD 231

Query: 463 LNLLNSRISDIFPIRF--LKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSG 520
            +L     S++       L      + + +        +  L + + LL L  + N +  
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291

Query: 521 -PLPLVSS--NLVYLDFSNNSF 539
            P  +     +L  +    N +
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 14/162 (8%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQF 159
               L  L  L++ ++D Q  +      S++N+ +L L   Q + ++        S ++ 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLILHMKQHI-LLLEIFVDVTSSVEC 226

Query: 160 LDLSSNYLYVDNVWWLSGLSF-----LEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214
           L+L    L   +   LS                 +        +   N +  LLEL  S 
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286

Query: 215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY 256
             L   P            LTSL+ + L +N ++ S P   Y
Sbjct: 287 NQLKSVPDGI------FDRLTSLQKIWLHTNPWDCSCPRIDY 322

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 39/248 (15%), Positives = 94/248 (37%), Gaps = 27/248 (10%)

Query: 460 LQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKN-----TQLLFLSVN 514
           ++ L+L N+RI+ I      +    L+ L +  N     I+ + ++       L  L ++
Sbjct: 54  VKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNG----INTIEEDSFSSLGSLEHLDLS 108

Query: 515 SNNMSGPLPLVS----SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE 570
            N +S  L        S+L +L+   N +  ++     +       L+ L++ +     +
Sbjct: 109 YNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFS--HLTKLQILRVGNMDTFTK 164

Query: 571 IPDCWMSY-QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTAL 629
           I     +    L+ L++  +      P SL SI ++  L L   +    + I +   +++
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 630 ASLDVDENEFVGNIPTWFGERFSRMLV-------LILRSNQFHGPLPKTICDLAFLQILD 682
             L++ + +      +      +  L+       + +        + K +  ++ L  L+
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283

Query: 683 LADNNLSG 690
            + N L  
Sbjct: 284 FSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 46/204 (22%)

Query: 603 TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSN 662
            ++  L L  NR++      L+ C  L +L +  N  +  I                  +
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIE----------------ED 94

Query: 663 QFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVS 722
            F          L  L+ LDL+ N LS             ++   F         L  ++
Sbjct: 95  SFSS--------LGSLEHLDLSYNYLS------------NLSSSWFKP-------LSSLT 127

Query: 723 LLDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRIPESI-GTMRALESVDFSVNQLS 780
            L++  N +     + + ++L  LQ +         +I       +  LE ++   + L 
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 781 GEIPQSMSSLTFLNHLNLSNNNLT 804
              P+S+ S+  ++HL L      
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHI 211

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.9 bits (223), Expect = 8e-19
 Identities = 77/402 (19%), Positives = 151/402 (37%), Gaps = 21/402 (5%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLS-DLQFLDLS 163
           +  L +LDLS NDF  + + +  G++  L +L LS  +F  +    + +L      LDL 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 164 SNYL--YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFP 221
           S ++         +   + L HL     N   +    M+ N L   L+L     +  +  
Sbjct: 180 SYHIKGGETESLQIPNTTVL-HLVFHP-NSLFSVQVNMSVNALGH-LQLSNIKLNDENCQ 236

Query: 222 TLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKF---SPLECLNLRNNSLQGTISDA 278
            L + +    +  T L ++ L            L++F    P+E LN+ N ++   I   
Sbjct: 237 RLMTFLSELTRGPT-LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 279 IGNLTSVSWLDLSI-NIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSN 337
               +  +   L I ++  Q  +    A +     +N++ + +S      +       S 
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS- 354

Query: 338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
               L+   +     +       + L TL L  N +     +       +  L+  D  L
Sbjct: 355 -FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSL 412

Query: 398 NGTLS---EFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWL 454
           N   S   +   A    +    +  N LT  V    +PP ++  L LHN  +    P+ +
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-RCLPP-KVKVLDLHNNRI-MSIPKDV 469

Query: 455 HSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH 496
              + LQ LN+ ++++  + P       + L+++ +  N + 
Sbjct: 470 THLQALQELNVASNQLKSV-PDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 97/475 (20%), Positives = 174/475 (36%), Gaps = 33/475 (6%)

Query: 132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNL 191
             + L+LS      +  P +  LS+L+ L LS N +   +         LE+LD+    L
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 192 SKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSI 251
              S        + SL  L LS       P     + +   NLT L  L L +  F    
Sbjct: 113 QNISC-----CPMASLRHLDLSFNDFDVLP-----VCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 252 PDWLYKFS-PLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNL 310
              +         L+L +  ++G  ++++    + + L L  +      +  +M+    L
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMS-VNAL 220

Query: 311 KSVNLRGVHLSQEISEILDIFSGCVSNG--LESLDMRSSSIYGHLTDQLGQF---RNLVT 365
             + L  + L+ E  + L  F   ++ G  L ++ ++        + +L QF   R +  
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 366 LNLANNSIVGLIPESFGQLS--TLRELQIYDNKLNG--TLSEFHFANLTKLSWFRVGGNQ 421
           LN+ N +I   I       S   L+ L I   K        E  ++   +++   +  + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 422 LTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRF-LK 480
             F        P     L            Q   + K LQ L L  + + + F +    K
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 481 SASQLKFLDVGLNQF-HGKISNLTKN-TQLLFLSVNSNNM-SGPLPLVSSNLVYLDFSNN 537
           + S L+ LDV LN                +L L+++SN +       +   +  LD  NN
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460

Query: 538 SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW-MSYQNLKVLKLSNNKF 591
               SI       V   ++L+ L +  N L+  +PD       +L+ + L +N +
Sbjct: 461 RIM-SIPK----DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 77/479 (16%), Positives = 147/479 (30%), Gaps = 43/479 (8%)

Query: 155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214
              + L LS N +    +  +S LS L  L L    +               L  L +S+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVFLFNQDLEYLDVSH 109

Query: 215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY--KFSPLECLNLRNNSLQ 272
             L +              + SL+HLDL  N F   +P        + L  L L     +
Sbjct: 110 NRLQNISC---------CPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 273 GTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEIL--DI 330
                 +  +  +    + +++           +     +  L  V     +  +     
Sbjct: 160 ---QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216

Query: 331 FSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPE-----SFGQLS 385
            +      L ++ +   +    +T      R    LN+    I            F    
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 386 TLRELQIYDNKLNG----TLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGL 441
            +  L IY+  +          +    L  L    V      F  +  +    ++    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 442 HNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH--GKI 499
                         S     +LN   +  +D        +  +L+ L +  N      K+
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKV 395

Query: 500 SNLTKNTQLLFLSVNSNNMSGPLPL-----VSSNLVYLDFSNNSFSGSISHFLCYRVNET 554
           + +TKN   L     S N             + +++ L+ S+N  +GS+   L       
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL------P 449

Query: 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKN 613
             ++ L L +N +   IP      Q L+ L +++N+           +TSL +++L  N
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.2 bits (216), Expect = 5e-18
 Identities = 81/459 (17%), Positives = 154/459 (33%), Gaps = 41/459 (8%)

Query: 362 NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ 421
               L+L+ NSI  L       LS LR L++  N++  +L    F     L +  V  N+
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 422 LTFEVKHDWIPPFQLVALGLH-NCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLK 480
           L   +    +    L  L L  N +      +   +   L +L L  ++   +  +    
Sbjct: 112 LQ-NISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 481 SASQLKFLDVGLNQFHG--KISNLTKNTQLLFLSVNSNNM-SGPLPLVSSNLVYLDFSNN 537
                  LD+      G    S    NT +L L  + N++ S  + +  + L +L  SN 
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 538 SFSG-SISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKV-----LKLSNNKF 591
             +  +    + +    T+    L +T  +++         +Q         L + N   
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 592 SGN-----LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTW 646
           +          S  ++ SL+  +++                 +    +  ++    I   
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMV 347

Query: 647 FGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK 706
                S    L    N F   + +    L  LQ L L  N L     K            
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKN----- 401

Query: 707 SFTGSVVYREILPLVSLLDISRNNF-SGEILSEVTNLKALQSINFSFNTFTGRIPESIGT 765
                      +  +  LD+S N+  S          +++  +N S N  TG +   +  
Sbjct: 402 -----------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450

Query: 766 MRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
              ++ +D   N++   IP+ ++ L  L  LN+++N L 
Sbjct: 451 --KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 73/406 (17%), Positives = 147/406 (36%), Gaps = 58/406 (14%)

Query: 336 SNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDN 395
            N + SLD     ++           +L  L++++N +  +   S   +++LR L +  N
Sbjct: 85  HNRIRSLD---FHVFLFNQ-------DLEYLDVSHNRLQNI---SCCPMASLRHLDLSFN 131

Query: 396 KLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQL--VALGLHNCYVGSRFPQW 453
             +       F NLTKL++  +   +   ++    +    L  + L L + ++     + 
Sbjct: 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETES 190

Query: 454 LHSQKH------LQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQ 507
           L               +L + +++           S +K  D    +    +S LT+   
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250

Query: 508 LLFLSVNSNNMSGP------LPLVSSNLVYLDFSNNSFSGSIS-HFLCYRVNETKS---- 556
           LL +++     +               + YL+  N + +  I      Y     KS    
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310

Query: 557 --------------------LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP 596
                               +    L+ +        C  S  +   L  + N F+ ++ 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 597 NSLGSITSLVWLYLRKNRLS--GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRM 654
               ++  L  L L++N L    K+ +  KN ++L +LDV  N    +           +
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLT 700
           LVL L SN   G + +  C    +++LDL +N +  +IPK +++L 
Sbjct: 431 LVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIM-SIPKDVTHLQ 473

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 37/156 (23%)

Query: 102 LLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLD 161
             ++  L  LD+S N        R      ++  LNLS     G +   L     ++ LD
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLD 456

Query: 162 LSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFP 221
           L +N                    + S+              L +L EL +++  L    
Sbjct: 457 LHNN-------------------RIMSIP--------KDVTHLQALQELNVASNQLKS-- 487

Query: 222 TLASPIPRG-LQNLTSLKHLDLDSNHFNSSIPDWLY 256
                +P G    LTSL+++ L  N ++ + P   Y
Sbjct: 488 -----VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 74/492 (15%), Positives = 152/492 (30%), Gaps = 107/492 (21%)

Query: 155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214
            +      ++  +   +      L+ L  LD  + +++     +     L  L +L  ++
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD----MTGIEKLTGLTKLICTS 73

Query: 215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT 274
            ++             L   T+L +L  DSN   +++   +   + L  LN   N L   
Sbjct: 74  NNITTLD---------LSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT-- 119

Query: 275 ISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGC 334
               +     +++L+ + N                L  +++                   
Sbjct: 120 -KLDVSQNPLLTYLNCARN---------------TLTEIDVSH----------------- 146

Query: 335 VSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD 394
            +  L  LD   +     L   +     L TL+ + N I  L      Q   L  L    
Sbjct: 147 -NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDT 200

Query: 395 NKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWL 454
           N +    ++       +L++     N+LT               + +             
Sbjct: 201 NNI----TKLDLNQNIQLTFLDCSSNKLT--------------EIDVTPL---------- 232

Query: 455 HSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVN 514
                L Y +   + ++++  +  L   S+L  L            +LT NTQL++    
Sbjct: 233 ---TQLTYFDCSVNPLTEL-DVSTL---SKLTTLHCIQTDL--LEIDLTHNTQLIYFQAE 283

Query: 515 SNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPD 573
                  L +   + L  LD      +  +       +++   L  L L +  L  E+  
Sbjct: 284 GCRKIKELDVTHNTQLYLLDCQAAGIT-ELD------LSQNPKLVYLYLNNTELT-ELDV 335

Query: 574 CWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633
              +   LK L   N     +   S+G I +L   +  + +       +L N +   ++ 
Sbjct: 336 SHNT--KLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 634 VDENEFVGNIPT 645
            D  +  GN   
Sbjct: 392 PDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 70/443 (15%), Positives = 141/443 (31%), Gaps = 82/443 (18%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
             +  L  L+ L  +SN+   +     +    NL YL     +   +    +  L+ L +
Sbjct: 58  TGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNL---DVTPLTKLTY 110

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
           L+  +N L   +   +S    L +L+     L++        +    L EL         
Sbjct: 111 LNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKKIT 162

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAI 279
              +           T L  LD   N   + +   + +   L  LN   N++   +   +
Sbjct: 163 KLDVT--------PQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNIT-KLD--L 208

Query: 280 GNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGL 339
                +++LD S N                L  +++  +               C  N L
Sbjct: 209 NQNIQLTFLDCSSN---------------KLTEIDVTPLTQLTYFD--------CSVNPL 245

Query: 340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNG 399
             LD             +     L TL+     ++ +        + L   Q    +   
Sbjct: 246 TELD-------------VSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRK-- 287

Query: 400 TLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKH 459
            + E    + T+L         +T   + D     +LV L L+N  + +     +     
Sbjct: 288 -IKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL-TELD--VSHNTK 340

Query: 460 LQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHG-KISNLTKNTQLLFLSVNSNNM 518
           L+ L+ +N+ I D   +  + +   L        Q        LT N+  + +S +  + 
Sbjct: 341 LKSLSCVNAHIQDFSSVGKIPA---LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397

Query: 519 SG-PLPLVSSNLVYLDFSNNSFS 540
            G P+ +   +    D + N+ +
Sbjct: 398 FGNPMNIEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 61/457 (13%), Positives = 134/457 (29%), Gaps = 89/457 (19%)

Query: 362 NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ 421
           N  +   A   +      S  QL+TL  L  +++ +   ++      LT L+      N 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGI--EKLTGLTKLICTSNN 75

Query: 422 LTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKS 481
           +T       +   Q                       +L YL   +++++++     +  
Sbjct: 76  ITT------LDLSQN---------------------TNLTYLACDSNKLTNLD----VTP 104

Query: 482 ASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSG 541
            ++L +L+   N+      ++++N  L +L+   N ++      ++ L  LD   N    
Sbjct: 105 LTKLTYLNCDTNKL--TKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKIT 162

Query: 542 SISHFLCYRVNETKSLEGLKLTDNYLQG-EIPDCWMSYQNLKVLKLSNNKFSGNLPNSLG 600
            +       V     L  L  + N +   ++       + L  L    N  +  L   L 
Sbjct: 163 KLD------VTPQTQLTTLDCSFNKITELDVSQN----KLLNRLNCDTNNIT-KLD--LN 209

Query: 601 SITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR 660
               L +L    N+L+    I +   T L   D   N     +        S++  L   
Sbjct: 210 QNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPL-TELDVS---TLSKLTTLHCI 262

Query: 661 SNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPL 720
                      I      Q++              +++ T +                  
Sbjct: 263 QTDL-----LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYL---------------- 301

Query: 721 VSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS 780
              LD      +     +++    L  +  +    T  +   +     L+S+      + 
Sbjct: 302 ---LDCQAAGITE---LDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

Query: 781 GEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFN 817
            +   S+  +  LN+   +          +    S  
Sbjct: 353 -DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLT 387

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 73/398 (18%), Positives = 135/398 (33%), Gaps = 37/398 (9%)

Query: 429 DWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFL 488
           DW P     +       + +           L  L+  NS I+D+  I  L     L  L
Sbjct: 13  DWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTG---LTKL 69

Query: 489 DVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLC 548
               N       +L++NT L +L+ +SN ++       + L YL+   N  +        
Sbjct: 70  ICTSNNI--TTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD----- 122

Query: 549 YRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWL 608
             V++   L  L    N L  EI         L  L    NK    L   +   T L  L
Sbjct: 123 --VSQNPLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLD--VTPQTQLTTL 175

Query: 609 YLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPL 668
               N+++    + +     L  L+ D N    NI      +  ++  L   SN+    +
Sbjct: 176 DCSFNKITE---LDVSQNKLLNRLNCDTN----NITKLDLNQNIQLTFLDCSSNKLTE-I 227

Query: 669 PKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISR 728
              +  L  L   D + N L+  +   +S L+ + T+      ++  ++     L+    
Sbjct: 228 D--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA 282

Query: 729 NNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS 788
                    +VT+   L  ++      T      +     L  +  +  +L+ E+   +S
Sbjct: 283 EGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VS 336

Query: 789 SLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDL 826
             T L  L+  N ++        ++ + N +  A    
Sbjct: 337 HNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQT 373

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.9 bits (215), Expect = 7e-18
 Identities = 56/302 (18%), Positives = 108/302 (35%), Gaps = 56/302 (18%)

Query: 521 PLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNY---LQGEIPDCWMS 577
            + L  +N      S NSF  +IS       +     E   L           + +C + 
Sbjct: 2   SIMLPINNN--FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI- 58

Query: 578 YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN 637
                 L+L+    S +LP++L     +  L + +N L   +P    +   L  LD  +N
Sbjct: 59  -NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPAS---LEYLDACDN 110

Query: 638 EFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCIS 697
                  +   E  + +  L + +NQ    LP+    L   + ++  +N L+  +P+  +
Sbjct: 111 RL-----STLPELPASLKHLDVDNNQLTM-LPELPALL---EYINADNNQLT-MLPELPT 160

Query: 698 NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTG 757
           +L                       +L +  N  +  +     +L+AL   + S N    
Sbjct: 161 SLE----------------------VLSVRNNQLT-FLPELPESLEAL---DVSTNLLE- 193

Query: 758 RIPESIGTMRALESV----DFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQL 813
            +P         E          N+++  IP+++ SL     + L +N L+ +I  S   
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 814 QS 815
           Q+
Sbjct: 253 QT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.1 bits (205), Expect = 1e-16
 Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 39/229 (17%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSS 164
           +   S L L+  +     +P  +     +  L ++    +  +P    +   L++LD   
Sbjct: 58  INQFSELQLNRLNLS--SLPDNLPP--QITVLEITQNALI-SLPELPAS---LEYLDACD 109

Query: 165 NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLA 224
           N L           + L+HLD+ +  L+   +          L  +   N  L   P L 
Sbjct: 110 NRLST----LPELPASLKHLDVDNNQLTMLPE------LPALLEYINADNNQLTMLPEL- 158

Query: 225 SPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTS 284
                     TSL+ L + +N     +P+       LE L++  N L+ ++         
Sbjct: 159 ---------PTSLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHH 204

Query: 285 ----VSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILD 329
                 +     N  +   IP ++ +     ++ L    LS  I E L 
Sbjct: 205 SEETEIFFRCRENR-IT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 51/300 (17%), Positives = 104/300 (34%), Gaps = 44/300 (14%)

Query: 150 QLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLE 209
            + N   L   +   N +      + S     E   L   N ++A   L+    +    E
Sbjct: 6   PINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVS-LLKECLINQFSE 63

Query: 210 LRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNN 269
           L+L+  +L         +P  L     +  L++  N    S+P+     + LE L+  +N
Sbjct: 64  LQLNRLNLSS-------LPDNL--PPQITVLEITQNAL-ISLPELP---ASLEYLDACDN 110

Query: 270 SLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILD 329
            L  T+ +   +L     LD+  N     ++         L+ +N     L   + E+  
Sbjct: 111 RLS-TLPELPASLK---HLDVDNN-----QLTMLPELPALLEYINADNNQL-TMLPELP- 159

Query: 330 IFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRE 389
                    LE L +R++ +   L +      +L  L+++ N +  L P    +     E
Sbjct: 160 -------TSLEVLSVRNNQL-TFLPELPE---SLEALDVSTNLLESL-PAVPVRNHHSEE 207

Query: 390 LQIY----DNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCY 445
            +I+    +N++   + E +  +L       +  N L+  ++                 Y
Sbjct: 208 TEIFFRCRENRIT-HIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 4e-14
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 23/190 (12%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSS 164
              L YLD   N      +P       +L++L++ + Q   M+P     L   ++++  +
Sbjct: 99  PASLEYLDACDNRLS--TLPELPA---SLKHLDVDNNQLT-MLPELPALL---EYINADN 149

Query: 165 NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLA 224
           N L +         + LE L +R+  L+   +         SL  L +S   L   P + 
Sbjct: 150 NQLTMLP----ELPTSLEVLSVRNNQLTFLPELP------ESLEALDVSTNLLESLPAV- 198

Query: 225 SPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTS 284
               R   +  +        N   + IP+ +    P   + L +N L   I +++   T+
Sbjct: 199 --PVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 285 VSWLDLSINI 294
                     
Sbjct: 256 QPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 3e-13
 Identities = 48/261 (18%), Positives = 96/261 (36%), Gaps = 53/261 (20%)

Query: 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
                  L L   ++  L P++      +  L+I  N L  +L E   A+L  L      
Sbjct: 57  LINQFSELQLNRLNLSSL-PDNLPPQ--ITVLEITQNAL-ISLPE-LPASLEYLD---AC 108

Query: 419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRF 478
            N+L+                           P+   S   L++L++ N++++ + P   
Sbjct: 109 DNRLS-------------------------TLPELPAS---LKHLDVDNNQLTML-P--- 136

Query: 479 LKSASQLKFLDVGLNQFHG---KISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFS 535
            +  + L++++   NQ        ++L        LSV +N ++  LP +  +L  LD S
Sbjct: 137 -ELPALLEYINADNNQLTMLPELPTSLEV------LSVRNNQLTF-LPELPESLEALDVS 188

Query: 536 NNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNL 595
            N    S+        +  ++    +  +N +   IP+  +S      + L +N  S  +
Sbjct: 189 TNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246

Query: 596 PNSLGSITSLVWLYLRKNRLS 616
             SL   T+    +  +   S
Sbjct: 247 RESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 1e-10
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 21/168 (12%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSS 164
              L +LD+ +N      +P        L Y+N  + Q   M+P    +L   + L + +
Sbjct: 119 PASLKHLDVDNNQLT--MLPELPA---LLEYINADNNQLT-MLPELPTSL---EVLSVRN 169

Query: 165 NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMA-TNTLPSLLELRLSNCSLHHFPTL 223
           N L     +       LE LD+ +  L       +   ++  + +  R     + H    
Sbjct: 170 NQL----TFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH---- 221

Query: 224 ASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSL 271
              IP  + +L     + L+ N  +S I + L + +     +      
Sbjct: 222 ---IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.0 bits (132), Expect = 7e-08
 Identities = 48/242 (19%), Positives = 80/242 (33%), Gaps = 58/242 (23%)

Query: 579 QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENE 638
                  LS N F   +  +     S  W    K  L G                 + NE
Sbjct: 6   PINNNFSLSQNSFYNTISGTYADYFSA-WDKWEKQALPG----------------ENRNE 48

Query: 639 FVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISN 698
            V  +        ++   L L        LP  +     + +L++  N L  ++P+  ++
Sbjct: 49  AVSLLKECL---INQFSELQLNRLNLSS-LPDNLPPQ--ITVLEITQNALI-SLPELPAS 101

Query: 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR 758
           L                        LD   N  S  +     +LK L   +   N  T  
Sbjct: 102 LEY----------------------LDACDNRLS-TLPELPASLKHL---DVDNNQLT-M 134

Query: 759 IPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNA 818
           +PE       LE ++   NQL+  +P+  +SL     L++ NN LT    L   L++ + 
Sbjct: 135 LPELPAL---LEYINADNNQLT-MLPELPTSLE---VLSVRNNQLTFLPELPESLEALDV 187

Query: 819 SS 820
           S+
Sbjct: 188 ST 189

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 1e-17
 Identities = 49/279 (17%), Positives = 93/279 (33%), Gaps = 20/279 (7%)

Query: 128 GSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLS---GLSFLEHL 184
           G       L   DT+        +     L+ L + +  +    ++      G+S L+ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 185 DLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDS 244
            L ++ ++  +   +   T P L  L L N S        + + + L     LK L +  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL--KPGLKVLSIAQ 158

Query: 245 NHFNSSIPDWLYKFSPLECLNLRNNSLQGTI----SDAIGNLTSVSWLDLSINIG--LQG 298
            H  +   + +  F  L  L+L +N   G      +       ++  L L         G
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 299 RIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLG 358
                 A    L+ ++L    L     +     S    + L SL++  + +   +   L 
Sbjct: 219 VCSALAAARVQLQGLDLSHNSL----RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL- 272

Query: 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
               L  L+L+ N +      S  +L  +  L +  N  
Sbjct: 273 -PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 6e-17
 Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 19/255 (7%)

Query: 452 QWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQF----HGKISNLTKNTQ 507
           +     + L+YL       +D+     +  +  LK L V   +           +   + 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 508 LLFLSVNSNNMSGPLP-----LVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKL 562
           L  L++ +  ++G  P         +L  L+  N S++   +     +      L+ L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 563 TDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNS----LGSITSLVWLYLRKNR---L 615
              +      +    +  L  L LS+N   G              +L  L LR       
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDL 675
           SG           L  LD+  N           +  S++  L L        +PK +   
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--P 273

Query: 676 AFLQILDLADNNLSG 690
           A L +LDL+ N L  
Sbjct: 274 AKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 44/223 (19%), Positives = 69/223 (30%), Gaps = 17/223 (7%)

Query: 76  HILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRY 135
            + EL L N   +   +     +     DL  L+  ++S                  L+ 
Sbjct: 96  GLQELTLENLEVT--GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 136 LNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVD----NVWWLSGLSFLEHLDLRSVNL 191
           L+++    +     Q+     L  LDLS N    +    +         L+ L LR+  +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 192 SKASDWLMA-TNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSS 250
              S    A       L  L LS+ SL                 + L  L+L        
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDA-----AGAPSCDWPSQLNSLNLSFTGL-KQ 267

Query: 251 IPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
           +P  L   + L  L+L  N L      +   L  V  L L  N
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 50/267 (18%), Positives = 83/267 (31%), Gaps = 26/267 (9%)

Query: 560 LKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNS---LGSITSLVWLYLRKNRLS 616
           LK  D           +   +LK L +   +    +      +  I+ L  L L    ++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 617 GKIPISLKNCT--ALASLDVDENEFVGN---IPTWFGERFSRMLVLILRSNQFHGPLPKT 671
           G  P  L   T   L  L++    +      +          + VL +          + 
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 672 ICDLAFLQILDLADNNLSGAIP----KCISNLTGMVTVK------SFTGSVVYREILPLV 721
           +     L  LDL+DN   G        C      +  +            V        V
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 722 SL--LDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQ 778
            L  LD+S N+      +        L S+N SF     ++P+ +     L  +D S N+
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285

Query: 779 LSGEIPQSMSSLTFLNHLNLSNNNLTG 805
           L    P S   L  + +L+L  N    
Sbjct: 286 LD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 63/360 (17%), Positives = 104/360 (28%), Gaps = 84/360 (23%)

Query: 196 DWLMATNTLPSL-LELRLSNCSLHHFPTLASPIPRGLQ-----NLTSLKHLDLDSNHFNS 249
           DW  A N L +  +EL     SL +            Q        SLK L + +    S
Sbjct: 23  DWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPS 82

Query: 250 SIPDWLYKF---SPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMAN 306
            I     +    S L+ L L N  + GT    +   T                       
Sbjct: 83  RILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP--------------------- 121

Query: 307 FCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTL 366
             +L  +NLR V  +   + + ++    +  GL+ L +  +       +Q+  F  L TL
Sbjct: 122 --DLNILNLRNVSWATRDAWLAELQQ-WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 367 NLANNSIVGLIPES----FGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQL 422
           +L++N  +G           +  TL+ L + +  +                         
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC------------------ 220

Query: 423 TFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSA 482
                                            ++  LQ L+L ++ + D          
Sbjct: 221 ----------------------------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 483 SQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGS 542
           SQL  L++           L     +L LS N      P P     +  L    N F  S
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 36/225 (16%), Positives = 68/225 (30%), Gaps = 23/225 (10%)

Query: 599 LGSITSLVWLYLRKN-RLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGE--RFSRML 655
            G   SL +L  R +          +    +L  L V        I          S + 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 656 VLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR 715
            L L + +  G  P  + +     +  L   N+S A                   + + +
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL-------------AELQQ 145

Query: 716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI----GTMRALES 771
            + P + +L I++ +       +V    AL +++ S N   G               L+ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 772 VDFSVNQ---LSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQL 813
           +          SG      ++   L  L+LS+N+L       +  
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.2 bits (210), Expect = 3e-17
 Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 48/317 (15%)

Query: 357 LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR 416
              F   +  NL   S+   +     +L+++ ++   ++ +  ++       L  ++   
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGI--QYLPNVTKLF 71

Query: 417 VGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPI 476
           + GN+LT       I P                    L + K+L +L L  ++I D+  +
Sbjct: 72  LNGNKLTD------IKP--------------------LTNLKNLGWLFLDENKIKDLSSL 105

Query: 477 RFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFS 535
           + LK    LK L +  N     I+ L    QL  L + +N ++    L   + L  L   
Sbjct: 106 KDLKK---LKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 161

Query: 536 NNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM--SYQNLKVLKLSNNKFSG 593
           +N  S  I             L+ L L+ N     I D       +NL VL+L + +   
Sbjct: 162 DNQIS-DIVPL-----AGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLN 211

Query: 594 NLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSR 653
              N   ++     +      L     IS        ++     EF   +   F +  + 
Sbjct: 212 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271

Query: 654 MLVLILRSNQFHGPLPK 670
                    +   PL +
Sbjct: 272 GKAKARFHGRVTQPLKE 288

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.7 bits (201), Expect = 4e-16
 Identities = 49/218 (22%), Positives = 84/218 (38%), Gaps = 32/218 (14%)

Query: 76  HILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRY 135
             ++ NL+  S ++              +L  +  +  +++D + VQ    I  + N+  
Sbjct: 22  ETIKDNLKKKSVTDA---------VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTK 69

Query: 136 LNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKAS 195
           L L+  +   + P  L NL +L +L L  N +   ++  L  L  L+ L L    +S  +
Sbjct: 70  LFLNGNKLTDIKP--LTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHNGISDIN 125

Query: 196 DWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWL 255
                   LP L  L L N  +             L  LT L  L L+ N   S I   L
Sbjct: 126 ----GLVHLPQLESLYLGNNKITDIT--------VLSRLTKLDTLSLEDNQI-SDIVP-L 171

Query: 256 YKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
              + L+ L L  N +  +   A+  L ++  L+L   
Sbjct: 172 AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQ 207

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.2 bits (197), Expect = 1e-15
 Identities = 50/285 (17%), Positives = 85/285 (29%), Gaps = 54/285 (18%)

Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
           +       NL        +      L+ +  +  +++ +   +V  +  L  +  L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNG 74

Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
             L+           L +L  L L    +             L++L  LK L L+ N   
Sbjct: 75  NKLTDIKPL----TNLKNLGWLFLDENKIKDLS--------SLKDLKKLKSLSLEHNGI- 121

Query: 249 SSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
           S I   L     LE L L NN +  T    +  LT +  L L  N     +I   +    
Sbjct: 122 SDING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN-----QI-SDIVPLA 172

Query: 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
            L    L+ ++LS+              N +  L              L   +NL  L L
Sbjct: 173 GLT--KLQNLYLSK--------------NHISDLRA------------LAGLKNLDVLEL 204

Query: 369 ANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLS 413
            +   +         L     ++  D  L          +  K +
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.7 bits (188), Expect = 1e-14
 Identities = 55/354 (15%), Positives = 117/354 (33%), Gaps = 57/354 (16%)

Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLD 289
                      +L       ++     + + ++ +   N+ ++ ++   I  L +V+ L 
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLF 71

Query: 290 LSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMRSSS 348
           L+ N     ++   +    NLK  NL  + L + +I ++           L+SL +  + 
Sbjct: 72  LNGN-----KL-TDIKPLTNLK--NLGWLFLDENKIKDL-SSLKDLKK--LKSLSLEHNG 120

Query: 349 IYGHLTD--QLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHF 406
           I    +D   L     L +L L NN I  +      +L+ L  L + DN+++  +     
Sbjct: 121 I----SDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP--L 171

Query: 407 ANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLL 466
           A LTKL    +  N ++       +                      L   K+L  L L 
Sbjct: 172 AGLTKLQNLYLSKNHIS------DLRA--------------------LAGLKNLDVLELF 205

Query: 467 NSRISDIFPIRF--LKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPL 524
           +    +        L   + +K  D G       IS+   + +   +  +    +  +  
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTD-GSLVTPEIISD-DGDYEKPNVKWHLPEFTNEVSF 263

Query: 525 VSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSY 578
           +    V +  +   F G ++  L      +  ++G  +      G         
Sbjct: 264 IFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPP 317

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.7 bits (175), Expect = 5e-13
 Identities = 56/358 (15%), Positives = 118/358 (32%), Gaps = 94/358 (26%)

Query: 460 LQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMS 519
           +     +++ I  IFP        +    ++        +++     +L           
Sbjct: 1   MGETITVSTPIKQIFPDDAFA---ETIKDNLKKKS----VTDAVTQNEL----------- 42

Query: 520 GPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQ 579
                  +++  +  +N+                  S++G++                  
Sbjct: 43  -------NSIDQIIANNSDIK---------------SVQGIQ---------------YLP 65

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF 639
           N+  L L+ NK + ++   L ++ +L WL+L +N++   +  SLK+   L SL ++ N  
Sbjct: 66  NVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNG- 120

Query: 640 VGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNL 699
           + +I         ++  L L +N+        +  L  L  L L DN +S      I  L
Sbjct: 121 ISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-----IVPL 171

Query: 700 TGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRI 759
            G+  +++                L +S+N+ S   L  +  LK L  +         + 
Sbjct: 172 AGLTKLQN----------------LYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKP 213

Query: 760 PESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFN 817
                 +    +V  +   L      S       +  +    N+   +P  T   SF 
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIIS-------DDGDYEKPNVKWHLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.2 bits (166), Expect = 5e-12
 Identities = 40/178 (22%), Positives = 67/178 (37%), Gaps = 21/178 (11%)

Query: 102 LLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLD 161
           L +LK+L +L L  N  + +     +  ++ L+ L+L     +  I   L +L  L+ L 
Sbjct: 83  LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNG-ISDING-LVHLPQLESLY 137

Query: 162 LSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFP 221
           L +N +   ++  LS L+ L+ L L    +S           L  L  L LS   +    
Sbjct: 138 LGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNLYLSKNHISDLR 191

Query: 222 TLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ--GTISD 277
                    L  L +L  L+L S    +   +          +   + SL     ISD
Sbjct: 192 --------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.2 bits (201), Expect = 4e-16
 Identities = 81/484 (16%), Positives = 146/484 (30%), Gaps = 95/484 (19%)

Query: 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSN 165
             +  LD+   +    +    +  ++  + + L D             L++ +  D+SS 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-----------GLTEARCKDISSA 51

Query: 166 YLYVDNVWWLSGLSFLEHLDLRSVNLSKA-----SDWLMATNTLPSLLELRLSNCSLHHF 220
                    L     L  L+LRS  L           L   +    + +L L NC L   
Sbjct: 52  ---------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC--KIQKLSLQNCCLT-- 98

Query: 221 PTLASPIPRGLQNLTSLKHLDLDSNHFNSS-----IPDWLYKFSPLECLNLRNNSLQGT- 274
                 +   L+ L +L+ L L  N    +         L     LE L L   SL    
Sbjct: 99  GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 275 ---ISDAIGNLTSVSWLDLSIN-IGLQG--RIPRSMA-NFCNLKSVNLRGVHLSQE-ISE 326
              ++  +        L +S N I   G   + + +  + C L+++ L    ++ +   +
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 327 ILDIFSGCVSNGLESLDMRSSSIYG----HLTD-QLGQFRNLVTLNLANNSI----VGLI 377
           +  I +   S  L  L + S+ +       L    L     L TL +    I     G +
Sbjct: 219 LCGIVASKAS--LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 378 PESFGQLSTLRELQIYDNKLNGT----LSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPP 433
                   +L+EL +  N+L       L E       +L    V     T          
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC------- 329

Query: 434 FQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD----IFPIRFLKSASQLKFLD 489
               +  L                + L  L + N+R+ D           +  S L+ L 
Sbjct: 330 CSHFSSVLAQN-------------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 490 VGLNQFHGK-----ISNLTKNTQLLFLSVNSNNMSGP--------LPLVSSNLVYLDFSN 536
           +              + L  N  L  L +++N +           +      L  L   +
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436

Query: 537 NSFS 540
             +S
Sbjct: 437 IYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 81/490 (16%), Positives = 155/490 (31%), Gaps = 87/490 (17%)

Query: 77  ILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDF--QGVQ-IPRFIGSMRNL 133
           I  L+++    S+ R   +  +      L+    + L          + I   +     L
Sbjct: 5   IQSLDIQCEELSDARWAELLPL------LQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 134 RYLNLSDTQF----VGMIPPQLGNLS-DLQFLDLSSNYLYVDNVWWLSGL----SFLEHL 184
             LNL   +     V  +   L   S  +Q L L +  L       LS        L+ L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 185 DLRSVNLSKASDWLMATNTL---PSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLD 241
            L    L  A   L+    L     L +L+L  CSL        P+   L+     K L 
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS--AASCEPLASVLRAKPDFKELT 176

Query: 242 LDSNHFNSS----IPDWLYK-FSPLECLNLRNNSLQ----GTISDAIGNLTSVSWLDLSI 292
           + +N  N +    +   L      LE L L +  +       +   + +  S+  L L  
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 293 N----IGLQGRIPRSMANFCNLKSVNLRGVHLSQE----ISEILDIFSGCVSNGLESLDM 344
           N    +G+    P  +     L+++ +    ++ +    +  +L          L+ L +
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL-----RAKESLKELSL 291

Query: 345 RSSSIYG----HLTDQLGQF-RNLVTLNLANNSI----VGLIPESFGQLSTLRELQIYDN 395
             + +       L + L +    L +L + + S              Q   L ELQI +N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 396 KLNGT----LSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFP 451
           +L       L +      + L    +    ++             +A  L          
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS-------CSSLAATLLAN------- 397

Query: 452 QWLHSQKHLQYLNLLNSRISDIFPIRFLKS----ASQLKFLDVGLNQFHGKI-----SNL 502
                   L+ L+L N+ + D   ++ ++S       L+ L +    +  ++     +  
Sbjct: 398 ------HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 451

Query: 503 TKNTQLLFLS 512
                L  +S
Sbjct: 452 KDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 7e-12
 Identities = 84/514 (16%), Positives = 152/514 (29%), Gaps = 118/514 (22%)

Query: 335 VSNGLESLDMRSSSI-YGHLTDQLGQFRNLVTLNLANNSI----VGLIPESFGQLSTLRE 389
           +S  ++SLD++   +      + L   +    + L +  +       I  +      L E
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 390 LQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSR 449
           L +  N+L                   VG + +   ++    P  ++  L L NC +   
Sbjct: 61  LNLRSNELGD-----------------VGVHCVLQGLQT---PSCKIQKLSLQNCCLTGA 100

Query: 450 ----FPQWLHSQKHLQYLNLLNSRISD----IFPIRFLKSASQLKFLDVGLNQFHGK--- 498
                   L +   LQ L+L ++ + D    +     L    +L+ L +           
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 499 --ISNLTKNTQLLFLSVNSNNMSGP--------LPLVSSNLVYLDFSNNSFSGSISHFLC 548
              S L        L+V++N+++          L      L  L   +   +      LC
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 549 YRVNETKSLEGLKLTDNYLQGE-----IPDCWMSYQNLKVLKLSNNKFS----GNLPNSL 599
             V    SL  L L  N L         P        L+ L +     +    G+L   L
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 600 GSITSLVWLYLRKNRLSGKIPISL-----KNCTALASLDVDENEFVGNIPTWFGERFSRM 654
            +  SL  L L  N L  +    L     +    L SL V    F               
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF--------TAACCSH 332

Query: 655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVY 714
              +L  N+F             L  L +++N L  A  + +    G             
Sbjct: 333 FSSVLAQNRF-------------LLELQISNNRLEDAGVRELCQGLGQPGSV-------- 371

Query: 715 REILPLVSLLDISRNNFSGE----ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALE 770
                 + +L ++  + S      + + +    +L+ ++ S N                 
Sbjct: 372 ------LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG-------------- 411

Query: 771 SVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
             D  + QL   + Q    L     L L +   +
Sbjct: 412 --DAGILQLVESVRQPGCLLE---QLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 70/409 (17%), Positives = 118/409 (28%), Gaps = 91/409 (22%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGK-----ISNLTKNTQLLFLS 512
             +Q L++    +SD      L    Q + + +              S L  N  L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 513 VNSNNMSGP--------LPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTD 564
           + SN +           L   S  +  L   N   +G+    L   +    +L+ L L+D
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 565 NYLQGE----------IPDCWMSYQNLKVLKLSNNKFS----GNLPNSLGSITSLVWLYL 610
           N L              P C      L+ L+L     S      L + L +      L +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQC-----RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 611 RKNRLSGK----IPISLKNCTA-LASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFH 665
             N ++      +   LK+    L +L ++                 R L  I+ S    
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCG--------VTSDNCRDLCGIVASKA-- 227

Query: 666 GPLPKTICDLAFLQILDLADNNL--SGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSL 723
                       L+ L L  N L   G    C   L     +++                
Sbjct: 228 -----------SLRELALGSNKLGDVGMAELCPGLLHPSSRLRT---------------- 260

Query: 724 LDISRNNFSGE---ILSEV-TNLKALQSINFSFNTFTGRIPESIGTM-----RALESVDF 774
           L I     + +    L  V    ++L+ ++ + N         +          LES+  
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 775 SVNQLSGE----IPQSMSSLTFLNHLNLSNNNLT--GKIPLSTQLQSFN 817
                +          ++   FL  L +SNN L   G   L   L    
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 51/214 (23%), Positives = 71/214 (33%), Gaps = 17/214 (7%)

Query: 108 LSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQFLDLSSNY 166
              + L  N    V    F    RNL  L L        I       L+ L+ LDLS N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNA 91

Query: 167 L--YVDNVWWLSGLSFLEHLDLRSVNLSK-ASDWLMATNTLPSLLELRLSNCSLHHFPTL 223
               VD   +  GL  L  L L    L +           L +L  L L + +L   P  
Sbjct: 92  QLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLF---RGLAALQYLYLQDNALQALPDD 147

Query: 224 ASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLT 283
                   ++L +L HL L  N  +S           L+ L L  N +      A  +L 
Sbjct: 148 T------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 284 SVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRG 317
            +  L L  N  L      ++A    L+ + L  
Sbjct: 202 RLMTLYLFAN-NLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 14/200 (7%)

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
           +P G+    + + + L  N  +            L  L L +N L    + A   L  + 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRS 346
            LDLS N  L+   P +      L +++L    L QE+     +F G  +  L+ L ++ 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGP--GLFRGLAA--LQYLYLQD 138

Query: 347 SSIYGHLTDQLGQFRNLV---TLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSE 403
           +++   L D    FR+L     L L  N I  +   +F  L +L  L ++ N++   +  
Sbjct: 139 NAL-QALPD--DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP 194

Query: 404 FHFANLTKLSWFRVGGNQLT 423
             F +L +L    +  N L+
Sbjct: 195 HAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 54/266 (20%), Positives = 77/266 (28%), Gaps = 63/266 (23%)

Query: 131 RNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS-V 189
              + + L   +   +         +L  L L SN L   +    +GL+ LE LDL    
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 190 NLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS 249
            L          + L  L  L L  C L          P   + L +L++L L  N   +
Sbjct: 92  QLRSVDP--ATFHGLGRLHTLHLDRCGLQELG------PGLFRGLAALQYLYLQDNALQA 143

Query: 250 SIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCN 309
              D       L  L L  N +      A   L S+  L L  N                
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN---------------- 187

Query: 310 LKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLA 369
                +  VH           F       L  L                      TL L 
Sbjct: 188 ----RVAHVH--------PHAFR-----DLGRLM---------------------TLYLF 209

Query: 370 NNSIVGLIPESFGQLSTLRELQIYDN 395
            N++  L  E+   L  L+ L++ DN
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 44/173 (25%), Positives = 61/173 (35%), Gaps = 10/173 (5%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQF 159
           A   L  L  LDLS N       P     +  L  L+L        + P     L+ LQ+
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQY 133

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
           L L  N L          L  L HL L    +S   +   A   L SL  L L    + H
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAH 191

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ 272
               A       ++L  L  L L +N+ ++   + L     L+ L L +N   
Sbjct: 192 VHPHA------FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 45/226 (19%), Positives = 78/226 (34%), Gaps = 23/226 (10%)

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF 639
             + + L  N+ S     S  +  +L  L+L  N L+     +      L  LD+ +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 640 VGNIP-TWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISN 698
           + ++    F     R+  L L         P     LA LQ L L DN L          
Sbjct: 93  LRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--------- 142

Query: 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTFTG 757
               +   +F         L  ++ L +  N  S  +       L +L  +    N    
Sbjct: 143 ---ALPDDTFRD-------LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 758 RIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNL 803
             P +   +  L ++    N LS    ++++ L  L +L L++N  
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 42/260 (16%), Positives = 81/260 (31%), Gaps = 59/260 (22%)

Query: 335 VSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD 394
           +    + + +  + I           RNL  L L +N +  +   +F  L+ L +L + D
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 395 NKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWL 454
           N    ++    F  L +L    +    L        +                   P   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE------LG------------------PGLF 125

Query: 455 HSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKN-----TQLL 509
                LQYL L ++ +  + P    +    L  L +  N+    IS++ +        L 
Sbjct: 126 RGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNR----ISSVPERAFRGLHSLD 180

Query: 510 FLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG 569
            L ++ N ++                 ++F                 L  L L  N L  
Sbjct: 181 RLLLHQNRVA-------------HVHPHAFRD------------LGRLMTLYLFANNLSA 215

Query: 570 EIPDCWMSYQNLKVLKLSNN 589
              +     + L+ L+L++N
Sbjct: 216 LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 43/193 (22%), Positives = 66/193 (34%), Gaps = 9/193 (4%)

Query: 500 SNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLE 558
             +   +Q +FL  N  +        +  NL  L   +N  +  I       +     LE
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGL---ALLE 83

Query: 559 GLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG 617
            L L+DN     +    +     L  L L         P     + +L +LYL+ N L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 618 KIPI-SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLA 676
            +P  + ++   L  L +  N         F      +  L+L  N+     P    DL 
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 677 FLQILDLADNNLS 689
            L  L L  NNLS
Sbjct: 202 RLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 27/206 (13%)

Query: 603 TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSN 662
            +   ++L  NR+S     S + C  L  L +  N         F    + +  L L  N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDN 90

Query: 663 QFHGPLPK-TICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLV 721
                +   T   L  L  L L    L   +               F G         L 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP-----------GLFRG---------LA 129

Query: 722 SL--LDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQ 778
           +L  L +  N     +  +   +L  L  +    N  +     +   + +L+ +    N+
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 779 LSGEIPQSMSSLTFLNHLNLSNNNLT 804
           ++   P +   L  L  L L  NNL+
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLS 214

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.3 bits (188), Expect = 4e-15
 Identities = 48/277 (17%), Positives = 93/277 (33%), Gaps = 46/277 (16%)

Query: 357 LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR 416
                N + +    +++   +      L  +  L  +   +  T+       L  L    
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLE 69

Query: 417 VGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPI 476
           +  NQ+T       + P +                    +   +  L L  + + ++  I
Sbjct: 70  LKDNQIT------DLAPLK--------------------NLTKITELELSGNPLKNVSAI 103

Query: 477 RFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFS 535
             L+    +K LD+   Q    ++ L   + L  L ++ N ++   PL   +NL YL   
Sbjct: 104 AGLQ---SIKTLDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG 159

Query: 536 NNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNL 595
           N   S  ++            L  LK  DN +  +I     S  NL  + L NN+ S   
Sbjct: 160 NAQVS-DLTPL-----ANLSKLTTLKADDNKIS-DISPL-ASLPNLIEVHLKNNQISDVS 211

Query: 596 PNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL 632
           P  L + ++L  + L    ++ +      N      +
Sbjct: 212 P--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 23/194 (11%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
             +  L +L  L+L  N    +     + ++  +  L LS      +    +  L  ++ 
Sbjct: 57  EGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKNVSA--IAGLQSIKT 111

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
           LDL+S  +   +V  L+GLS L+ L L    ++  S        L +L  L + N  +  
Sbjct: 112 LDLTSTQI--TDVTPLAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQVSD 165

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAI 279
                      L NL+ L  L  D N   S I   L     L  ++L+NN +  +    +
Sbjct: 166 LT--------PLANLSKLTTLKADDNKI-SDISP-LASLPNLIEVHLKNNQI--SDVSPL 213

Query: 280 GNLTSVSWLDLSIN 293
            N +++  + L+  
Sbjct: 214 ANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 47/284 (16%), Positives = 89/284 (31%), Gaps = 57/284 (20%)

Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
           ++ N   +    +     +     +L  +  L      +    +  +  L+ L  L+L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKD 72

Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
             ++  +        L  + EL LS   L +           +  L S+K LDL S    
Sbjct: 73  NQITDLA----PLKNLTKITELELSGNPLKNVS--------AIAGLQSIKTLDLTSTQIT 120

Query: 249 SSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
              P  L   S L+ L L  N +  T    +  LT++ +L +        ++   +    
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNA-----QV-SDLTPLA 170

Query: 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
           NL    L  +                  N +  +              L    NL+ ++L
Sbjct: 171 NLS--KLTTLKAD--------------DNKISDISP------------LASLPNLIEVHL 202

Query: 369 ANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
            NN I  +        S L  + + +  +      F+  NL   
Sbjct: 203 KNNQISDV--SPLANTSNLFIVTLTNQTIT-NQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 53/305 (17%), Positives = 107/305 (35%), Gaps = 52/305 (17%)

Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLD 289
               L +   +    ++   ++         +  L+     +  T  + +  L ++  L+
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLE 69

Query: 290 LSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMRSSS 348
           L  N     +I   +A   NL    +  + LS   +  +    +G  S  +++LD+ S+ 
Sbjct: 70  LKDN-----QI-TDLAPLKNLT--KITELELSGNPLKNV-SAIAGLQS--IKTLDLTSTQ 118

Query: 349 IYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFAN 408
           I       L    NL  L L  N I  +       L+ L+ L I + +++  L+    AN
Sbjct: 119 ITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DLTP--LAN 171

Query: 409 LTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNS 468
           L+KL+  +   N+++       I P                    L S  +L  ++L N+
Sbjct: 172 LSKLTTLKADDNKISD------ISP--------------------LASLPNLIEVHLKNN 205

Query: 469 RISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSN 528
           +ISD+ P+        L  + +       +      N  +  +    +        +S N
Sbjct: 206 QISDVSPLANTS---NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDN 262

Query: 529 LVYLD 533
             Y  
Sbjct: 263 GTYAS 267

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 26/218 (11%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
               DL  ++ L         ++    +  + NL  L L D Q   + P  L NL+ +  
Sbjct: 35  VTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAP--LKNLTKITE 89

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
           L+LS N L   NV  ++GL  ++ LDL S  ++     +     L +L  L L    + +
Sbjct: 90  LELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQITN 143

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAI 279
                      L  LT+L++L + +   +   P  L   S L  L   +N +  +    +
Sbjct: 144 IS--------PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI--SDISPL 191

Query: 280 GNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRG 317
            +L ++  + L  N   Q      +AN  NL  V L  
Sbjct: 192 ASLPNLIEVHLKNN---QISDVSPLANTSNLFIVTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 51/257 (19%), Positives = 105/257 (40%), Gaps = 22/257 (8%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNN 517
            +   +    S ++D      L     +  L          I  +     L+ L +  N 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLD---GITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74

Query: 518 MSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM 576
           ++   PL + + +  L+ S N    ++S          +S++ L LT   +    P   +
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLK-NVSAI-----AGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 577 SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDE 636
           S  NL+VL L  N+ + N+   L  +T+L +L +   ++S  +   L N + L +L  D+
Sbjct: 129 S--NLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADD 182

Query: 637 NEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCI 696
           N+ + +I          ++ + L++NQ     P  + + + L I+ L +  ++       
Sbjct: 183 NK-ISDISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYN 237

Query: 697 SNLTGMVTVKSFTGSVV 713
           +NL     VK  +G+ +
Sbjct: 238 NNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 21/185 (11%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
             L +L  ++ L+LS N  + V     I  +++++ L+L+ TQ   + P  L  LS+LQ 
Sbjct: 79  APLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
           L L  N +   N+  L+GL+ L++L + +  +S     L     L  L  L+  +  +  
Sbjct: 134 LYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD----LTPLANLSKLTTLKADDNKISD 187

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAI 279
                      L +L +L  + L +N  +   P  L   S L  + L N ++        
Sbjct: 188 IS--------PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYN 237

Query: 280 GNLTS 284
            NL  
Sbjct: 238 NNLVV 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 39/195 (20%), Positives = 78/195 (40%), Gaps = 21/195 (10%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
            A+  L+ +  LDL+S     V     +  + NL+ L L   Q   + P  L  L++LQ+
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQY 155

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
           L + +  +   ++  L+ LS L  L      +S     +    +LP+L+E+ L N  +  
Sbjct: 156 LSIGNAQV--SDLTPLANLSKLTTLKADDNKISD----ISPLASLPNLIEVHLKNNQISD 209

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAI 279
                      L N ++L  + L +    +      Y  + +    ++  S        I
Sbjct: 210 VS--------PLANTSNLFIVTLTNQTITN--QPVFYNNNLVVPNVVKGPSGAPIAPATI 259

Query: 280 GNLTSVSWLDLSINI 294
            +  + +  +L+ N+
Sbjct: 260 SDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 48/313 (15%), Positives = 101/313 (32%), Gaps = 89/313 (28%)

Query: 498 KISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKS 556
            I         + ++   +N++  +       +  L                       +
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV---------------TT 55

Query: 557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS 616
           +EG++                  NL  L+L +N+ + +L   L ++T +  L L  N L 
Sbjct: 56  IEGVQ---------------YLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLK 98

Query: 617 GKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLA 676
             +  ++    ++ +LD+   +     P                           +  L+
Sbjct: 99  -NVS-AIAGLQSIKTLDLTSTQITDVTP---------------------------LAGLS 129

Query: 677 FLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEIL 736
            LQ+L L  N ++      IS L G+  ++                 L I     S   L
Sbjct: 130 NLQVLYLDLNQITN-----ISPLAGLTNLQY----------------LSIGNAQVSD--L 166

Query: 737 SEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHL 796
           + + NL  L ++    N  +      + ++  L  V    NQ+S   P  +++ + L  +
Sbjct: 167 TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 797 NLSNNNLTGKIPL 809
            L+N  +T +   
Sbjct: 223 TLTNQTITNQPVF 235

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 35/243 (14%), Positives = 89/243 (36%), Gaps = 38/243 (15%)

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF 639
           N   +    +  +     +   +  +  L      ++  I   ++    L  L++ +N+ 
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQ- 74

Query: 640 VGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNL 699
           + ++     +  +++  L L  N         I  L  ++ LDL    ++      ++ L
Sbjct: 75  ITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-----VTPL 125

Query: 700 TGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRI 759
            G+  ++                 L +  N  +   +S +  L  LQ ++      +   
Sbjct: 126 AGLSNLQV----------------LYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD-- 165

Query: 760 PESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS--TQLQSFN 817
              +  +  L ++    N++S +I   ++SL  L  ++L NN ++   PL+  + L    
Sbjct: 166 LTPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVT 223

Query: 818 ASS 820
            ++
Sbjct: 224 LTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 35/224 (15%), Positives = 86/224 (38%), Gaps = 36/224 (16%)

Query: 599 LGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLI 658
             ++ + + +   K+ ++    ++  +   + +L       V  I     +  + ++ L 
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTG-VTTIEGV--QYLNNLIGLE 69

Query: 659 LRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREIL 718
           L+ NQ     P  + +L  +  L+L+ N L       +S + G+ ++K+           
Sbjct: 70  LKDNQITDLAP--LKNLTKITELELSGNPLKN-----VSAIAGLQSIKT----------- 111

Query: 719 PLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQ 778
                LD++    +   ++ +  L  LQ +    N  T      +  +  L+ +     Q
Sbjct: 112 -----LDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQ 162

Query: 779 LSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS--TQLQSFNASS 820
           +S   P  +++L+ L  L   +N ++   PL+    L   +  +
Sbjct: 163 VSDLTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKN 204

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 73.2 bits (180), Expect = 8e-14
 Identities = 50/333 (15%), Positives = 101/333 (30%), Gaps = 66/333 (19%)

Query: 108 LSYLDLSSNDF--QGVQ-IPRFIGSMRNLRYLNLSDTQF--VGM--IPPQLGNLSDLQFL 160
           +    L  +    +  + +   +    +++ + LS           +   + +  DL+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 161 DLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHF 220
           + S  +           L  L                L A    P L  +RLS+ +    
Sbjct: 66  EFSDIFTGRVKDEIPEALRLL----------------LQALLKCPKLHTVRLSDNAFG-- 107

Query: 221 PTLASPIPRGLQNLTSLKHLDLDSNHF-------------NSSIPDWLYKFSPLECLNLR 267
           PT   P+   L   T L+HL L +N                 ++        PL  +   
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167

Query: 268 NNSLQG----TISDAIGNLTSVSWLDLSIN----IGLQGRIPRSMANFCNLKSVNLRGVH 319
            N L+       +    +   +  + +  N     G++  +   +A    LK ++L+   
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 320 LS----QEISEILDIFSGCVSNGLESLDMRSSSIYG----HLTDQLGQFRN--LVTLNLA 369
            +      ++  L          L  L +    +       + D   +  N  L TL L 
Sbjct: 228 FTHLGSSALAIAL-----KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282

Query: 370 NNSI----VGLIPESFGQ-LSTLRELQIYDNKL 397
            N I    V  +     + +  L  L++  N+ 
Sbjct: 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 53/293 (18%), Positives = 92/293 (31%), Gaps = 37/293 (12%)

Query: 76  HILELNLRNPSTSNPRSML---VGKVNPALLDLKHLSYLDLSSNDF--QGVQ-IPRFIGS 129
            +      +  T   +  +   +  +  ALL    L  + LS N F     + +  F+  
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 130 MRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSV 189
              L +L L +             L       ++     +           L  +     
Sbjct: 121 HTPLEHLYLHNNG-----------LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 190 NLSK--ASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHF 247
            L      +W     +   L  +++    +     +   +  GL     LK LDL  N F
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP-EGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 248 N----SSIPDWLYKFSPLECLNLRNNSLQGT----ISDAIGNL--TSVSWLDLSIN-IGL 296
                S++   L  +  L  L L +  L       + DA   L    +  L L  N I L
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 297 QG--RIPRSMA-NFCNLKSVNLRGVHLSQE---ISEILDIFSGCVSNGLESLD 343
                +   +     +L  + L G   S+E   + EI ++FS      L+ LD
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 54/310 (17%), Positives = 99/310 (31%), Gaps = 58/310 (18%)

Query: 101 ALLDLKHLSYLDLSSNDF--QGVQ-IPRFIGSMRNLRYLNLSDTQ---FVGMIPPQLGNL 154
            LL+   +  + LS N    +  + +   I S ++L     SD         IP  L  L
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 155 SD-------LQFLDLSSNYLYVDNVWWLSGL----SFLEHLDLRSVNLS----------- 192
                    L  + LS N         L       + LEHL L +  L            
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 193 KASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIP 252
           +           P L  +      L +         +  Q+   L  + +  N       
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKE--WAKTFQSHRLLHTVKMVQNG------ 198

Query: 253 DWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN-IGLQG--RIPRSMANFCN 309
                        +R   ++  + + +     +  LDL  N     G   +  ++ ++ N
Sbjct: 199 -------------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 310 LKSVNLRGVHLSQE-ISEILDIFSGCVSNGLESLDMRSSSIYG----HLTDQLGQ-FRNL 363
           L+ + L    LS    + ++D FS   + GL++L ++ + I       L   + +   +L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 364 VTLNLANNSI 373
           + L L  N  
Sbjct: 306 LFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 45/332 (13%), Positives = 86/332 (25%), Gaps = 63/332 (18%)

Query: 206 SLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN----SSIPDWLYKFSPL 261
           S+    L   ++         +   L    S+K + L  N         + + +     L
Sbjct: 5   SIEGKSLKLDAI--TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 262 ECLNLRNNSLQ----------GTISDAIGNLTSVSWLDLSIN-IGLQG--RIPRSMANFC 308
           E     +                +  A+     +  + LS N  G      +   ++   
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 309 NLKSVNLR--------GVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYG----HLTDQ 356
            L+ + L         G  +++ + E+        +  L S+    + +           
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 357 LGQFRNLVTLNLANNSI-----VGLIPESFGQLSTLRELQIYDNKLNGT----LSEFHFA 407
               R L T+ +  N I       L+ E       L+ L + DN         L+     
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALK 241

Query: 408 NLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLN 467
           +   L    +    L+             V                      LQ L L  
Sbjct: 242 SWPNLRELGLNDCLLSARG-------AAAVVDAFSKL-----------ENIGLQTLRLQY 283

Query: 468 SRISDIFPIRFLKS----ASQLKFLDVGLNQF 495
           + I                  L FL++  N+F
Sbjct: 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 44/284 (15%), Positives = 91/284 (32%), Gaps = 58/284 (20%)

Query: 554 TKSLEGLKLTDNYLQGE----IPDCWMSYQNLKVLKLSNNKFSGN----LPNSLGSITSL 605
             S+EG  L  + +  E    +    +   ++K + LS N         L  ++ S   L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 606 VWLYLRKN---RLSGKIPI-------SLKNCTALASLDVDENEFVGNIPTWFGERFSRML 655
                      R+  +IP        +L  C  L ++ + +N F        G      L
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF--------GPTAQEPL 114

Query: 656 VLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR 715
           +  L  +               L+ L L +N L    P+  + +   +   +        
Sbjct: 115 IDFLSKH-------------TPLEHLYLHNNGLG---PQAGAKIARALQELAVNKKAKNA 158

Query: 716 EILPLVSLLDISRNNF---SGEILSEV-TNLKALQSINFSFNTFTGR-----IPESIGTM 766
             L     +   RN     S +  ++   + + L ++    N          + E +   
Sbjct: 159 PPL---RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 767 RALESVDFSVNQLSGE----IPQSMSSLTFLNHLNLSNNNLTGK 806
           + L+ +D   N  +      +  ++ S   L  L L++  L+ +
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 48/355 (13%), Positives = 98/355 (27%), Gaps = 78/355 (21%)

Query: 436 LVALGLHNCYVGSR----FPQWLHSQKHLQYLNLLNSRISDIFPI---RFLKSASQLKFL 488
           +    L    + +         L     ++ + L  + I           + S   L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 489 DVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLC 548
           +            + +  +LL  ++               L  +  S+N+F  +    L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKC----------PKLHTVRLSDNAFGPTAQEPLI 115

Query: 549 YRVNETKSLEGLKLTDNYL-------------QGEIPDCWMSYQNLKVLKLSNNKFSGN- 594
             +++   LE L L +N L             +  +     +   L+ +    N+     
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 595 ---LPNSLGSITSLVWLYLRKNRLSGK-----IPISLKNCTALASLDVDENEFVGNIPTW 646
                 +  S   L  + + +N +  +     +   L  C  L  LD+ +N         
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-------- 227

Query: 647 FGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK 706
           F    S  L + L+S                L+ L L D  LS      + +    +   
Sbjct: 228 FTHLGSSALAIALKSWP-------------NLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 707 SFTGSVVYREILPLVSLLDISRNNFSGE---ILSEV--TNLKALQSINFSFNTFT 756
                            L +  N    +    L  V    +  L  +  + N F+
Sbjct: 275 GLQ-------------TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 48/322 (14%), Positives = 97/322 (30%), Gaps = 81/322 (25%)

Query: 527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNY---LQGEIPDCWMS------ 577
            ++  +  S N+     + +L   +   K LE  + +D +   ++ EIP+          
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91

Query: 578 -YQNLKVLKLSNNKFSGN----LPNSLGSITSLVWLYLRKNRLS-------------GKI 619
               L  ++LS+N F       L + L   T L  LYL  N L                +
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151

Query: 620 PISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQ 679
               KN   L S+    N               +      +S++              L 
Sbjct: 152 NKKAKNAPPLRSIICGRNRL--------ENGSMKEWAKTFQSHRL-------------LH 190

Query: 680 ILDLADNNLS--GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE--- 734
            + +  N +   G     +  L     +K                 LD+  N F+     
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKV----------------LDLQDNTFTHLGSS 234

Query: 735 ILSEV-TNLKALQSINFSFNTFTGRIPESIGTM------RALESVDFSVNQLSGE----I 783
            L+    +   L+ +  +    + R   ++           L+++    N++  +    +
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 784 PQSM-SSLTFLNHLNLSNNNLT 804
              +   +  L  L L+ N  +
Sbjct: 295 KTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 43/315 (13%), Positives = 95/315 (30%), Gaps = 62/315 (19%)

Query: 524 LVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE----IPDCWMSYQ 579
           +   ++       ++ +      +   + E  S++ + L+ N +  E    + +   S +
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 580 NLKVLKLSNNKFS----------GNLPNSLGSITSLVWLYLRKNRLS--GKIPIS--LKN 625
           +L++ + S+                L  +L     L  + L  N      + P+   L  
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 626 CTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLAD 685
            T L  L +  N          G +    +   L+    +            L+ +    
Sbjct: 121 HTPLEHLYLHNNGL--------GPQAGAKIARALQELAVNKKAKNAPP----LRSIICGR 168

Query: 686 NNLSGAIPKCISN-LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE----ILSEV- 739
           N L     K  +        + +                + + +N    E    +L E  
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHT----------------VKMVQNGIRPEGIEHLLLEGL 212

Query: 740 TNLKALQSINFSFNTFTGR----IPESIGTMRALESVDFSVNQLSGE----IPQSMSSLT 791
              + L+ ++   NTFT      +  ++ +   L  +  +   LS      +  + S L 
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272

Query: 792 F--LNHLNLSNNNLT 804
              L  L L  N + 
Sbjct: 273 NIGLQTLRLQYNEIE 287

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 53/294 (18%), Positives = 101/294 (34%), Gaps = 44/294 (14%)

Query: 357 LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR 416
              F   +  NL   S+   +     +L+++ ++   ++ +    S      L  ++   
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 74

Query: 417 VGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPI 476
           + GN+LT       I P                    L + K+L +L L  +++ D+  +
Sbjct: 75  LNGNKLTD------IKP--------------------LANLKNLGWLFLDENKVKDLSSL 108

Query: 477 RFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFS 535
           + LK    LK L +  N     I+ L    QL  L + +N ++    L   + L  L   
Sbjct: 109 KDLKK---LKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 164

Query: 536 NNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNL 595
           +N  S  I             L+ L L+ N++        +   NL VL+L + +     
Sbjct: 165 DNQIS-DIVPL-----AGLTKLQNLYLSKNHISDLRALAGLK--NLDVLELFSQECLNKP 216

Query: 596 PNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGE 649
            N   ++     +      L     IS        ++     EF   +   F +
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 270

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 36/220 (16%)

Query: 76  HILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRY 135
             ++ NL+  S ++              +L  +  +  +++D + VQ    I  + N+  
Sbjct: 25  ETIKDNLKKKSVTDA---------VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTK 72

Query: 136 LNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKAS 195
           L L+  +   + P  L NL +L +L L  N +   ++  L  L  L+ L L    +S   
Sbjct: 73  LFLNGNKLTDIKP--LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGISD-- 126

Query: 196 DWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWL 255
             +     LP L  L L N  +             L  LT L  L L+ N   S I   L
Sbjct: 127 --INGLVHLPQLESLYLGNNKITDIT--------VLSRLTKLDTLSLEDNQI-SDIVP-L 174

Query: 256 YKFSPLECLNLRNNSLQGTISD--AIGNLTSVSWLDLSIN 293
              + L+ L L  N     ISD  A+  L ++  L+L   
Sbjct: 175 AGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 49/269 (18%), Positives = 82/269 (30%), Gaps = 54/269 (20%)

Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
           +       NL        +      L+ +  +  +++ +   +V  +  L  +  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNG 77

Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
             L+           L +L  L L    +             L++L  LK L L+ N   
Sbjct: 78  NKLTDIKPL----ANLKNLGWLFLDENKVKDLS--------SLKDLKKLKSLSLEHNGI- 124

Query: 249 SSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
           S I   L     LE L L NN +  T    +  LT +  L L  N     +I   +    
Sbjct: 125 SDING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN-----QI-SDIVPLA 175

Query: 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
            L    L+ ++LS+              N +  L              L   +NL  L L
Sbjct: 176 GLT--KLQNLYLSK--------------NHISDLRA------------LAGLKNLDVLEL 207

Query: 369 ANNSIVGLIPESFGQLSTLRELQIYDNKL 397
            +   +         L     ++  D  L
Sbjct: 208 FSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 60/305 (19%), Positives = 105/305 (34%), Gaps = 46/305 (15%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNN 517
                 NL    ++D      L S   +  +    +     +  +     +  L +N N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNK 79

Query: 518 MSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM 576
           ++   PL +  NL +L    N            +V +  SL+ LK               
Sbjct: 80  LTDIKPLANLKNLGWLFLDEN------------KVKDLSSLKDLK--------------- 112

Query: 577 SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDE 636
               LK L L +N  S ++   L  +  L  LYL  N+++  I   L   T L +L +++
Sbjct: 113 ---KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLED 165

Query: 637 NEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCI 696
           N+ + +I        +++  L L  N         +  L  L +L+L             
Sbjct: 166 NQ-ISDIV--PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQ 220

Query: 697 SNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFN--T 754
           SNL    TVK+  GS+V  EI+      +     +     +   +    Q +        
Sbjct: 221 SNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 280

Query: 755 FTGRI 759
           F GR+
Sbjct: 281 FHGRV 285

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 53/320 (16%), Positives = 107/320 (33%), Gaps = 78/320 (24%)

Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLD 289
                      +L       ++     + + ++ +   N+ +       I  L +V+ L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLF 74

Query: 290 LSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMRSSS 348
           L+ N     ++   +    NLK  NL  + L + ++ ++         + L+ L      
Sbjct: 75  LNGN-----KL-TDIKPLANLK--NLGWLFLDENKVKDL---------SSLKDLK----- 112

Query: 349 IYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFAN 408
                         L +L+L +N I  +       L  L  L + +NK+   ++    + 
Sbjct: 113 -------------KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DIT--VLSR 154

Query: 409 LTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNS 468
           LTKL    +  NQ++       I P                          LQ L L  +
Sbjct: 155 LTKLDTLSLEDNQISD------IVPLA--------------------GLTKLQNLYLSKN 188

Query: 469 RISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSN 528
            ISD+  +  LK+   L  L++   +   K  N   N  +     N++       ++S +
Sbjct: 189 HISDLRALAGLKN---LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245

Query: 529 LVY----LDFSNNSFSGSIS 544
             Y    + +    F+  +S
Sbjct: 246 GDYEKPNVKWHLPEFTNEVS 265

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 38/225 (16%)

Query: 599 LGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFG-ERFSRMLVL 657
             +    +   L+K  ++    ++     ++  +  + +    +I +  G +    +  L
Sbjct: 20  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKL 73

Query: 658 ILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREI 717
            L  N+     P  + +L  L  L L +N +       +S+L  +  +KS          
Sbjct: 74  FLNGNKLTDIKP--LANLKNLGWLFLDENKVK-----DLSSLKDLKKLKS---------- 116

Query: 718 LPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVN 777
                 L +  N  S   ++ + +L  L+S+    N  T      +  +  L+++    N
Sbjct: 117 ------LSLEHNGIS--DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 166

Query: 778 QLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS--TQLQSFNASS 820
           Q+S +I   ++ LT L +L LS N+++    L+    L      S
Sbjct: 167 QIS-DIV-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 30/229 (13%), Positives = 79/229 (34%), Gaps = 38/229 (16%)

Query: 577 SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDE 636
           ++       L     +  +      + S+  +    + +   +   ++    +  L ++ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 77

Query: 637 NEFVGNIPTWFG-ERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKC 695
           N     +           +  L L  N+        + DL  L+ L L  N +S      
Sbjct: 78  N----KLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-----D 126

Query: 696 ISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTF 755
           I+ L  +  ++S                L +  N  +   ++ ++ L  L +++   N  
Sbjct: 127 INGLVHLPQLES----------------LYLGNNKIT--DITVLSRLTKLDTLSLEDNQI 168

Query: 756 TGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT 804
           +      +  +  L+++  S N +S ++ ++++ L  L+ L L +    
Sbjct: 169 SD--IVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECL 213

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 14/145 (9%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSS 164
             ++  L +++           I  + NL  L +          P L  L+ L  LD+S 
Sbjct: 65  AHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 165 NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLA 224
           +      +  ++ L  +  +DL           +M   TLP L  L +    +H +    
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITD---IMPLKTLPELKSLNIQFDGVHDY---- 174

Query: 225 SPIPRGLQNLTSLKHLDLDSNHFNS 249
               RG+++   L  L   S     
Sbjct: 175 ----RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 16/170 (9%)

Query: 104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLS 163
            +  L+Y+ L++ +   +     I    N++ L +++       P  +  LS+L+ L + 
Sbjct: 42  QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 164 SNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTL 223
              +  D +  LSGL+ L  LD+       +   L   NTLP +  + LS          
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGA------ 148

Query: 224 ASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG 273
                  L+ L  LK L++  +  +      +  F  L  L   + ++ G
Sbjct: 149 -ITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 671 TICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVK-SFTGSVVYREILPLVSL--LDIS 727
           T   +  L  + LA+ N++      I     +  +  +   +  Y  I  L +L  L I 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIM 96

Query: 728 RNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSM 787
             + + + +  ++ L +L  ++ S +     I   I T+  + S+D S N    +I   +
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPL 155

Query: 788 SSLTFLNHLNLSNNNLTGKIPLS--TQLQSFNASS 820
            +L  L  LN+  + +     +    +L    A S
Sbjct: 156 KTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 33/203 (16%), Positives = 72/203 (35%), Gaps = 30/203 (14%)

Query: 603 TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSN 662
            + +   L ++  +    I+     +L  + +     V ++     E    +  L + + 
Sbjct: 23  KAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN-VTDLT--GIEYAHNIKDLTINNI 76

Query: 663 QFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVS 722
                 P  I  L+ L+ L +   +++      +S LT +                    
Sbjct: 77  HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL------------------ 116

Query: 723 LLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGE 782
            LDIS +     IL+++  L  + SI+ S+N     I   + T+  L+S++   + +   
Sbjct: 117 -LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY 174

Query: 783 IPQSMSSLTFLNHLNLSNNNLTG 805
               +     LN L   +  + G
Sbjct: 175 RG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 12/164 (7%)

Query: 527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKL 586
           ++L Y+  +N + +  ++           +++ L + + +     P   +S  NL+ L++
Sbjct: 44  NSLTYITLANINVT-DLTGI-----EYAHNIKDLTINNIHATNYNPISGLS--NLERLRI 95

Query: 587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTW 646
                + +   +L  +TSL  L +  +     I   +     + S+D+  N  + +I   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155

Query: 647 FGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG 690
             +    +  L ++ +  H      I D   L  L      + G
Sbjct: 156 --KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 30/198 (15%), Positives = 71/198 (35%), Gaps = 45/198 (22%)

Query: 176 SGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLT 235
           + ++ L ++ L ++N++     L       ++ +L ++N    ++  ++         L+
Sbjct: 41  AQMNSLTYITLANINVTD----LTGIEYAHNIKDLTINNIHATNYNPIS--------GLS 88

Query: 236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIG 295
           +L+ L +      S     L   + L  L++ +++   +I   I  L  V+ +DLS N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 296 LQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTD 355
           +       +     LKS+N++                    +G+                
Sbjct: 149 I--TDIMPLKTLPELKSLNIQ-------------------FDGVHDYRG----------- 176

Query: 356 QLGQFRNLVTLNLANNSI 373
            +  F  L  L   + +I
Sbjct: 177 -IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 38/164 (23%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHG-KISNLTKNTQL--LFLSVN 514
            +++ L + N   ++  PI  L     L+ L +        KI NL+  T L  L +S +
Sbjct: 66  HNIKDLTINNIHATNYNPISGLS---NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 515 SNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPD 573
           +++ S    + +   +  +D S N     I             L+ L             
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM-----------PLKTLP------------ 159

Query: 574 CWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG 617
                  LK L +  +         +     L  LY     + G
Sbjct: 160 ------ELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 19/163 (11%)

Query: 337 NGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNK 396
           N L  + + + ++   LT  +    N+  L + N             LS L  L+I    
Sbjct: 44  NSLTYITLANINV-TDLTG-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99

Query: 397 LNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF----QLVALGL-HNCYVGSRFP 451
           +       + + LT L+   +  +     +    +       ++ ++ L +N  +    P
Sbjct: 100 VTSDKIP-NLSGLTSLTLLDISHSAHDDSI----LTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 452 QWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQ 494
             L +   L+ LN+    + D   I       +L  L      
Sbjct: 155 --LKTLPELKSLNIQFDGVHDYRGIEDFP---KLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 26/184 (14%), Positives = 65/184 (35%), Gaps = 19/184 (10%)

Query: 241 DLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRI 300
            L ++  N +IPD    F       L  +S    I++A   + S++++ L+        +
Sbjct: 7   GLKASQDNVNIPD--STFKAYLNGLLGQSSTA-NITEA--QMNSLTYITLANI-----NV 56

Query: 301 PRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQ 359
              +         N++ + ++    +   +  SG  +  LE L +    +       L  
Sbjct: 57  -TDLTGIEYAH--NIKDLTINNIHATNY-NPISGLSN--LERLRIMGKDVTSDKIPNLSG 110

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419
             +L  L++++++    I      L  +  + +  N     +       L +L    +  
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQF 168

Query: 420 NQLT 423
           + + 
Sbjct: 169 DGVH 172

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 16/171 (9%)

Query: 155 SDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLS 213
           S    LDLS N L  +   W  + L+ L  L L   +L+  S    A   +P+L  L LS
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--EAFVPVPNLRYLDLS 96

Query: 214 NCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG 273
           +  LH              +L +L+ L L +NH      +     + L+ L L  N +  
Sbjct: 97  SNHLHTLDEFL------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150

Query: 274 TISDAIGN---LTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLS 321
              + I +   L  +  LDLS N     ++P +      L +    G++L 
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSN--KLKKLPLTD--LQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 9e-12
 Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 9/169 (5%)

Query: 107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQFLDLSSN 165
           + + LDLS N+   ++       + NL  L LS    +  I  +    + +L++LDLSSN
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98

Query: 166 YLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLAS 225
           +L+  + +  S L  LE L L + ++        A   +  L +L LS   +  FP    
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIVVVDR--NAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 226 PIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL--ECLNLRNNSLQ 272
              +    L  L  LDL SN         L K        L L NN L+
Sbjct: 157 ---KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 19/143 (13%)

Query: 361 RNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGN 420
            NL +L L++N +  +  E+F  +  LR L +  N L+ TL EF F++L  L    +  N
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNN 122

Query: 421 QLTFEVKHDWIPPF------QLVALGLHNCYVGSRFP----QWLHSQKHLQYLNLLNSRI 470
            +        +         QL  L L    + SRFP    +  +    L  L+L ++++
Sbjct: 123 HIVV------VDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 471 SDIFPIRFLKSASQLKFLDVGLN 493
             + P+  L+         + L+
Sbjct: 176 KKL-PLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 50/258 (19%), Positives = 87/258 (33%), Gaps = 45/258 (17%)

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDW-LYKFSPLECLNLRNNSLQGTISDAIGNLTSV 285
           +P+ L   +    LDL  N+ +    +W   + + L  L L +N L    S+A   + ++
Sbjct: 33  VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90

Query: 286 SWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR 345
            +LDLS N  L   +   +  F +L    L  + L                N +  +D  
Sbjct: 91  RYLDLSSN-HLH-TLDEFL--FSDL--QALEVLLLYN--------------NHIVVVD-- 128

Query: 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFG---QLSTLRELQIYDNKLNGTLS 402
             + +  +         L  L L+ N I     E      +L  L  L +  NKL   L 
Sbjct: 129 -RNAFEDMA-------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLP 179

Query: 403 EFHFANLTKLSWFRV--GGNQLT-----FEVKHDWIPPFQLVALGLHNCYVGSRFPQWLH 455
                 L       +    N L      +++   W    QL ++      +     + LH
Sbjct: 180 LTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR-QLSSVMDFQEDLYCMHSKKLH 238

Query: 456 SQKHLQYLNLLNSRISDI 473
           +   L + N    + S  
Sbjct: 239 NIFSLDFFNCSEYKESAW 256

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPP-QLGNLSDLQF 159
           A + + +L YLDLSSN    +    F   ++ L  L L +   + ++      +++ LQ 
Sbjct: 83  AFVPVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNH-IVVVDRNAFEDMAQLQK 140

Query: 160 LDLSSNYLY---VDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN-- 214
           L LS N +    V+ +   + L  L  LDL S  L K     +          L L N  
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200

Query: 215 ----CSLHHF 220
               C L+  
Sbjct: 201 LECDCKLYQL 210

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 51/227 (22%), Positives = 79/227 (34%), Gaps = 31/227 (13%)

Query: 500 SNLTKNTQLLFLSVN--SNNMSGPLPLVSSNLVYLDFSNNSFSGSISH--FLCYRVNETK 555
            +L   T LL LS N  S   +   P   +NL  L  S+N  +  IS   F         
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAF-----VPVP 88

Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
           +L  L L+ N+L       +   Q L+VL L NN       N+   +  L  LYL +N++
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 616 SGKIP----ISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHG-PLPK 670
           S + P            L  LD+  N     +         ++   +      H  PL  
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSN----KLKKLPLTDLQKLPAWVKNGLYLHNNPL-- 201

Query: 671 TICD------LAFLQILDLADNNLSGAIPKCISN--LTGMVTVKSFT 709
             CD       +  Q   L+          C+ +  L  + ++  F 
Sbjct: 202 -ECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFN 247

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 50/275 (18%), Positives = 87/275 (31%), Gaps = 52/275 (18%)

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRV-G 418
            RN + L      +  +   +F     L +++I  N +   +    F+NL KL   R+  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRF 478
            N L +      I P     L                   +LQYL + N+ I  +  +  
Sbjct: 89  ANNLLY------INPEAFQNL------------------PNLQYLLISNTGIKHLPDVHK 124

Query: 479 LKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNS 538
           + S  Q   LD            +  N  +  +  NS         +S   V L  + N 
Sbjct: 125 IHS-LQKVLLD------------IQDNINIHTIERNS------FVGLSFESVILWLNKNG 165

Query: 539 FSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNS 598
                +       N T+  E     +N L+    D +       +L +S  +        
Sbjct: 166 IQEIHNSAF----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221

Query: 599 LGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633
           L ++  L        +   K+P +L+   AL    
Sbjct: 222 LENLKKLRARSTYNLK---KLP-TLEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 38/218 (17%), Positives = 72/218 (33%), Gaps = 16/218 (7%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQF 159
           A      L  +++S ND   V       ++  L  + +     +  I P+   NL +LQ+
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLL-ELRLSNCSLH 218
           L +S+  +                LD++  N++  +    +   L      L L+   + 
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQD-NINIHTIERNSFVGLSFESVILWLNKNGIQ 167

Query: 219 HFPTLASPIPRGLQNLTSLKHLDL-DSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISD 277
                   I     N T L  L+L D+N+      D  +  S    L++    +    S 
Sbjct: 168 E-------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 278 AIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNL 315
            + NL  +          L      ++     L   +L
Sbjct: 221 GLENLKKLRARSTYNLKKL-----PTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 47/293 (16%), Positives = 95/293 (32%), Gaps = 38/293 (12%)

Query: 201 TNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSP 260
           ++   + +ELR     L                   L+ +++  N     I   +  FS 
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQ------KGAFSGFGDLEKIEISQNDVLEVIEADV--FSN 77

Query: 261 LECLN----LRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLR 316
           L  L+     + N+L     +A  NL ++ +L +S   G++  +P    +   + S+   
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIK-HLP----DVHKIHSLQKV 131

Query: 317 GVHLSQ--EISEI-LDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSI 373
            + +     I  I  + F G        L +  + I           +        NN++
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFE-SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190

Query: 374 VGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPP 433
             L  + F   S    L I   +++ +L  +   NL KL         L        +P 
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR--ARSTYNLKK------LPT 241

Query: 434 F----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSA 482
                 L+   L        F  W    + +  L+ + ++      + ++  A
Sbjct: 242 LEKLVALMEASLTYPSHCCAFANWR---RQISELHPICNKSILRQEVDYMTQA 291

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 54/264 (20%), Positives = 92/264 (34%), Gaps = 44/264 (16%)

Query: 155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214
            +   L      L V      SG   LE +++   ++ +  +     + LP L E+R+  
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEK 88

Query: 215 C-SLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSP-LECLNL-RNNSL 271
             +L +        P   QNL +L++L + +      +PD     S     L++  N ++
Sbjct: 89  ANNLLYIN------PEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINI 141

Query: 272 QGTISDAIGNLTSVS-WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDI 330
                ++   L+  S  L L+ N G+Q  I  S  N   L  +NL   +  +E+    D+
Sbjct: 142 HTIERNSFVGLSFESVILWLNKN-GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPN--DV 197

Query: 331 FSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL 390
           F G                              V L+++   I  L       L  LR  
Sbjct: 198 FHGA--------------------------SGPVILDISRTRIHSLPSYGLENLKKLRAR 231

Query: 391 QIYDNKLNGTLSEFHFANLTKLSW 414
             Y+ K   TL       L + S 
Sbjct: 232 STYNLKKLPTLE--KLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 9e-09
 Identities = 47/304 (15%), Positives = 82/304 (26%), Gaps = 57/304 (18%)

Query: 236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIG 295
           S +      +   + IP  L        L      L+     A      +  +++S N  
Sbjct: 10  SNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 296 LQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTD 355
           L+  I   +  F NL    L  + + +             +N L  ++           +
Sbjct: 67  LE-VIEADV--FSNLP--KLHEIRIEK-------------ANNLLYIN----------PE 98

Query: 356 QLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLT-KLSW 414
                 NL  L ++N  I  L             L I DN    T+    F  L+ +   
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 415 FRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIF 474
             +  N +        I         L                   +     N+ + ++ 
Sbjct: 159 LWLNKNGIQ------EIHNSAFNGTQL------------------DELNLSDNNNLEEL- 193

Query: 475 PIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDF 534
           P      AS    LD+   + H   S   +N + L      N    P       L+    
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253

Query: 535 SNNS 538
           +  S
Sbjct: 254 TYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 20/224 (8%)

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPIS-LKNCTALASLDVDENE 638
           N   L+    K       +      L  + + +N +   I      N   L  + +++  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 639 FVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISN 698
            +  I     +    +  L++ +                  +LD+ DN     I +    
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER---- 146

Query: 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR 758
                   SF G      +     +L +++N    EI +   N   L  +N S N     
Sbjct: 147 -------NSFVG------LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEE 192

Query: 759 IPESI-GTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNN 801
           +P  +         +D S  ++       + +L  L   +  N 
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 39/254 (15%), Positives = 83/254 (32%), Gaps = 34/254 (13%)

Query: 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP-NSLGSITSLVWLYLRK- 612
           ++   L+     L+      +  + +L+ +++S N     +  +   ++  L  + + K 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 613 NRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSN-QFHGPLPKT 671
           N L    P + +N   L  L +       ++P        + ++L ++ N   H     +
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 672 ICDLAF-LQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN 730
              L+F   IL L  N +   I     N                     L  L     NN
Sbjct: 149 FVGLSFESVILWLNKNGIQ-EIHNSAFNG------------------TQLDELNLSDNNN 189

Query: 731 FS---GEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSM 787
                 ++    +    L       ++      E++  +RA      S   L  ++P ++
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR-----STYNLK-KLP-TL 242

Query: 788 SSLTFLNHLNLSNN 801
             L  L   +L+  
Sbjct: 243 EKLVALMEASLTYP 256

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 49/214 (22%), Positives = 74/214 (34%), Gaps = 25/214 (11%)

Query: 108 LSYLDLSSNDFQGV--QIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSN 165
              ++    +   +   +P+      +   L+LS+          L   + L  L+L   
Sbjct: 12  HLEVNCDKRNLTALPPDLPK------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 166 YLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLAS 225
            L    V     L  L  LDL    L           TLP+L  L +S   L        
Sbjct: 66  ELTKLQVDG--TLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTS------ 114

Query: 226 PIPRGL-QNLTSLKHLDLDSNHFNSSIPDWLY-KFSPLECLNLRNNSLQGTISDAIGNLT 283
            +P G  + L  L+ L L  N    ++P  L      LE L+L NN+L    +  +  L 
Sbjct: 115 -LPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 284 SVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRG 317
           ++  L L  N  L   IP+       L    L G
Sbjct: 173 NLDTLLLQEN-SLY-TIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 45/170 (26%), Positives = 67/170 (39%), Gaps = 15/170 (8%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFL 160
            L+    L+ L+L     +  ++    G++  L  L+LS  Q    +P     L  L  L
Sbjct: 50  TLMPYTRLTQLNLDRA--ELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVL 105

Query: 161 DLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHF 220
           D+S N L    +  L GL  L+ L L+   L      L+     P L +L L+N +L   
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT--PTPKLEKLSLANNNLTE- 162

Query: 221 PTLASPIPRGL-QNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNN 269
                 +P GL   L +L  L L  N    +IP   +    L    L  N
Sbjct: 163 ------LPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 49/222 (22%), Positives = 66/222 (29%), Gaps = 43/222 (19%)

Query: 202 NTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL 261
           + + S LE+     +L   P     +P           L L  N   +     L  ++ L
Sbjct: 7   SKVASHLEVNCDKRNLTALP---PDLP------KDTTILHLSENLLYTFSLATLMPYTRL 57

Query: 262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLS 321
             LNL    L  T     G L  +  LDLS N  LQ  +P        L    L  + +S
Sbjct: 58  TQLNLDRAEL--TKLQVDGTLPVLGTLDLSHN-QLQ-SLP---LLGQTL--PALTVLDVS 108

Query: 322 QEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESF 381
                          N L SL          L         L  L L  N +  L P   
Sbjct: 109 --------------FNRLTSL---PLGALRGLG-------ELQELYLKGNELKTLPPGLL 144

Query: 382 GQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
                L +L + +N L   L       L  L    +  N L 
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 40/148 (27%), Positives = 56/148 (37%), Gaps = 15/148 (10%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
                L  L  LDLS N  Q   +P    ++  L  L++S  +   +    L  L +LQ 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 160 LDLSSNYLYV--DNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSL 217
           L L  N L      +  L+    LE L L + NL++        N L +L  L L   SL
Sbjct: 129 LYLKGNELKTLPPGL--LTPTPKLEKLSLANNNLTELPA--GLLNGLENLDTLLLQENSL 184

Query: 218 HHFPTLASPIPRGLQNLTSLKHLDLDSN 245
           +        IP+G      L    L  N
Sbjct: 185 YT-------IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%)

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419
            ++   L+L+ N +      +    + L +L +   +L   L       L  L    +  
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSH 86

Query: 420 NQLTFEVKHDWIPPF-----QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIF 474
           NQL        +P        L  L +    + S     L     LQ L L  + +  + 
Sbjct: 87  NQLQS------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL- 139

Query: 475 PIRFLKSASQLKFLDVGLNQF----HGKISNLTKNTQLLFLSVNSNNMSGPLP---LVSS 527
           P   L    +L+ L +  N       G ++ L     L  L +  N++   +P     S 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGL---ENLDTLLLQENSLYT-IPKGFFGSH 195

Query: 528 NLVYLDFSNN 537
            L +     N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 7/140 (5%)

Query: 556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRL 615
               L L++N L        M Y  L  L L   + +  L    G++  L  L L  N+L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQL 89

Query: 616 SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICD- 674
              +P+  +   AL  LDV  N    ++P         +  L L+ N+    LP  +   
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTP 146

Query: 675 LAFLQILDLADNNLSGAIPK 694
              L+ L LA+NNL+  +P 
Sbjct: 147 TPKLEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 42/222 (18%), Positives = 69/222 (31%), Gaps = 48/222 (21%)

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF 639
           +  +L LS N        +L   T L  L L +  L+ K+ +       L +LD+  N+ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQL 89

Query: 640 VGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNL 699
             ++P    +    + VL +  N+        +  L  LQ L L  N L   +P      
Sbjct: 90  Q-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLP------ 140

Query: 700 TGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRI 759
                    T         P +  L ++ NN              L  +        G  
Sbjct: 141 -----PGLLTP-------TPKLEKLSLANNN--------------LTEL--PAGLLNG-- 170

Query: 760 PESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNN 801
                 +  L+++    N L   IP+       L    L  N
Sbjct: 171 ------LENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 57/251 (22%), Positives = 86/251 (34%), Gaps = 49/251 (19%)

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
           IP  L    S K+LDL  N          + F  L+ L+L    +Q     A  +L+ +S
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRS 346
            L L+ N      I +S+A        +L+ +                V   L SL    
Sbjct: 80  TLILTGN-----PI-QSLALGAFSGLSSLQKLVA--------------VETNLASL---E 116

Query: 347 SSIYGHLTDQLGQFRNLVTLNLANNSIVGLI-PESFGQLSTLRELQIYDNKLNGTLSEFH 405
           +   GHL         L  LN+A+N I     PE F  L+ L  L +  NK+  ++    
Sbjct: 117 NFPIGHLK-------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 168

Query: 406 FANLTKLSWFRV----GGNQLTFEVKHDWIPP-----FQLVALGLHNCYVGSRFPQWLHS 456
              L ++    +      N + F      I P      +L  L L    + S        
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNF------IQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 457 QKHLQYLNLLN 467
              LQ + L  
Sbjct: 223 LTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 9/191 (4%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQFLDLS 163
              L  LDLS  + Q ++   +   + +L  L L+    +  +       LS LQ L   
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAV 108

Query: 164 SNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTL 223
              L     + +  L  L+ L++    +         +N L +L  L LS+  +      
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCT 167

Query: 224 ASPIPRGLQNLTSLK-HLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNL 282
                R L  +  L   LDL  N   + I    +K   L+ L L  N L+         L
Sbjct: 168 D---LRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRL 223

Query: 283 TSVSWLDLSIN 293
           TS+  + L  N
Sbjct: 224 TSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 49/267 (18%), Positives = 92/267 (34%), Gaps = 64/267 (23%)

Query: 132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNL 191
           + + L+LS      +      +  +LQ LDLS   +          LS L  L L    +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 192 SKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS-S 250
              +    A + L SL +L     +L             + +L +LK L++  N   S  
Sbjct: 89  QSLAL--GAFSGLSSLQKLVAVETNLASLENFP------IGHLKTLKELNVAHNLIQSFK 140

Query: 251 IPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNL 310
           +P++    + LE L+L +N +Q      +  L  +  L+LS+++                
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS--------------- 185

Query: 311 KSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFR--NLVTLNL 368
                                     N +  +             Q G F+   L  L L
Sbjct: 186 -------------------------LNPMNFI-------------QPGAFKEIRLKELAL 207

Query: 369 ANNSIVGLIPESFGQLSTLRELQIYDN 395
             N +  +    F +L++L+++ ++ N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 62/271 (22%), Positives = 95/271 (35%), Gaps = 69/271 (25%)

Query: 155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214
              + LDLS N            L  L      S                P L  L LS 
Sbjct: 28  FSTKNLDLSFNP-----------LRHLGSYSFFS---------------FPELQVLDLSR 61

Query: 215 CSLHHFPTLASPIPRGL-QNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG 273
           C +         I  G  Q+L+ L  L L  N   S         S L+ L     +L  
Sbjct: 62  CEI-------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 274 TISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG 333
             +  IG+L ++  L+++ N                ++S  L               FS 
Sbjct: 115 LENFPIGHLKTLKELNVAHN---------------LIQSFKLPEY------------FSN 147

Query: 334 CVSNGLESLDMRS---SSIYGHLTDQLGQFRNL-VTLNLANNSIVGLIPESFGQLSTLRE 389
             +  LE LD+ S    SIY      L Q   L ++L+L+ N +  + P +F ++  L+E
Sbjct: 148 LTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKE 204

Query: 390 LQIYDNKLNGTLSEFHFANLTKLSWFRVGGN 420
           L +  N+L  ++ +  F  LT L    +  N
Sbjct: 205 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQFLDL 162
            L HLS L L+ N  Q + +  F G + +L+ L   +T     +     G+L  L+ L++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 163 SSN---YLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMA--TNTLPSLLELRLSNCSL 217
           + N      +      S L+ LEHLDL S  +       +          L L LS   +
Sbjct: 132 AHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 218 HHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNN 269
           +        I  G      LK L LD+N   S       + + L+ + L  N
Sbjct: 190 NF-------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 28/228 (12%)

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISL-KNCTALASLDVDENE 638
           + K L LS N        S  S   L  L L +  +   I     ++ + L++L +  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 639 FVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNL-SGAIPKCIS 697
            + ++        S +  L+             I  L  L+ L++A N + S  +P+  S
Sbjct: 88  -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 698 NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNF---SGEILSEVTNLKALQ-SINFSFN 753
           NLT +                     LD+S N         L  +  +  L  S++ S N
Sbjct: 147 NLTNLEH-------------------LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 754 TFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNN 801
                I         L+ +    NQL          LT L  + L  N
Sbjct: 188 PMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 44/205 (21%), Positives = 66/205 (32%), Gaps = 30/205 (14%)

Query: 500 SNLTKNTQLLFLSVN-----SNNMSGPLPLVSSNLVYLDFSNNSFSGSISH--FLCYRVN 552
            NL  +T+ L LS N      +      P     L  LD S      +I    +      
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFP----ELQVLDLSRCEIQ-TIEDGAY-----Q 73

Query: 553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRK 612
               L  L LT N +Q      +    +L+ L       +      +G + +L  L +  
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 613 NRL-SGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSR-------MLVLILRSNQF 664
           N + S K+P    N T L  LD+  N+   +I                  L L L  N  
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC---TDLRVLHQMPLLNLSLDLSLNPM 189

Query: 665 HGPLPKTICDLAFLQILDLADNNLS 689
           +  +         L+ L L  N L 
Sbjct: 190 NF-IQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 41/159 (25%)

Query: 104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ----LGNLSDLQF 159
            LK L  L+++ N  Q  ++P +  ++ NL +L+LS  +    I       L  +  L  
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL 180

Query: 160 -LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLH 218
            LDLS N +          +  L+ L L +  L                           
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS------------------------- 214

Query: 219 HFPTLASPIPRG-LQNLTSLKHLDLDSNHFNSSIPDWLY 256
                   +P G    LTSL+ + L +N ++ S P   Y
Sbjct: 215 --------VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 245

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 24/192 (12%)

Query: 102 LLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLD 161
              L +    +L       +        +  ++  N  ++    +    +   ++L+ L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELH 69

Query: 162 LSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFP 221
           LS N +   ++  L  L+ LE L +    L   +           L  L L N  L    
Sbjct: 70  LSHNQI--SDLSPLKDLTKLEELSVNRNRLKNLNG-----IPSACLSRLFLDNNELRDTD 122

Query: 222 TLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGN 281
                    L +L +L+ L + +N    SI   L   S LE L+L  N +       +  
Sbjct: 123 --------SLIHLKNLEILSIRNNKL-KSIVM-LGFLSKLEVLDLHGNEIT-NTGG-LTR 170

Query: 282 LTSVSWLDLSIN 293
           L  V+W+DL+  
Sbjct: 171 LKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 26/172 (15%)

Query: 102 LLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLD 161
             +L  +   +  +++ Q +     +    NL+ L+LS  Q   + P  L +L+ L+ L 
Sbjct: 37  QKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91

Query: 162 LSSNYLYVDNVWWLSGLSFLEHLDLRSVNLS--KASDWLMATNTLPSLLELRLSNCSLHH 219
           ++ N         L  L+ +    L  + L   +  D   +   L +L  L + N  L  
Sbjct: 92  VNRNR--------LKNLNGIPSACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKS 142

Query: 220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSL 271
                      L  L+ L+ LDL  N   ++    L +   +  ++L     
Sbjct: 143 IV--------MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 24/184 (13%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNN 517
            +    NL    ++D+   + L     ++  +   +     ++ +   T L  L ++ N 
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELS---GVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQ 74

Query: 518 MSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG-EIPD-- 573
           +S   PL   + L  L  + N            R+     +    L+  +L   E+ D  
Sbjct: 75  ISDLSPLKDLTKLEELSVNRN------------RLKNLNGIPSACLSRLFLDNNELRDTD 122

Query: 574 CWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD 633
             +  +NL++L + NNK   ++   LG ++ L  L L  N ++      L     +  +D
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWID 178

Query: 634 VDEN 637
           +   
Sbjct: 179 LTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 41/252 (16%), Positives = 82/252 (32%), Gaps = 34/252 (13%)

Query: 357 LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR 416
                N V  NL   S+  L   S  +LS ++     ++ +  +L+       T L    
Sbjct: 15  DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELH 69

Query: 417 VGGNQLTFEVKHDWIPPFQ----LVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472
           +  NQ++       + P +    L  L ++   + +           L  L L N+ + D
Sbjct: 70  LSHNQISD------LSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRD 120

Query: 473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVY 531
              +  LK    L+ L +  N+    I  L   ++L  L ++ N ++    L     + +
Sbjct: 121 TDSLIHLK---NLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNW 176

Query: 532 LDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKF 591
           +D +         +       E      +K  D      I   ++S          +   
Sbjct: 177 IDLTGQ----KCVNEPVKYQPELYITNTVKDPDGRW---ISPYYISNGG----SYVDGCV 225

Query: 592 SGNLPNSLGSIT 603
              LP     ++
Sbjct: 226 LWELPVYTDEVS 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 54/290 (18%), Positives = 95/290 (32%), Gaps = 57/290 (19%)

Query: 467 NSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS 526
            + I+ +FP   L         ++G       + +  + + +   + +++N+     +  
Sbjct: 6   PTPINQVFPDPGLA---NAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQSLAGMQF 61

Query: 527 -SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLK 585
            +NL  L  S+N  S  +S        +   LE L +  N L+  +         L  L 
Sbjct: 62  FTNLKELHLSHNQIS-DLSPL-----KDLTKLEELSVNRNRLK-NLNGI--PSACLSRLF 112

Query: 586 LSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPT 645
           L NN+      +SL  + +L  L +R N+L   I   L   + L  LD+  NE       
Sbjct: 113 LDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNE------- 161

Query: 646 WFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV 705
                        + +      L K       +  +DL          K    L    TV
Sbjct: 162 -------------ITNTGGLTRLKK-------VNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 706 KSFTGSVVYREILPLVSLLDISRNN--FSGEILSEVTNLKALQSINFSFN 753
           K   G          +S   IS       G +L E         +++ F+
Sbjct: 202 KDPDGR--------WISPYYISNGGSYVDGCVLWE--LPVYTDEVSYKFS 241

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 34/250 (13%), Positives = 80/250 (32%), Gaps = 59/250 (23%)

Query: 151 LGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLEL 210
              L++    +L      V ++     LS +++ +  + N+   +          +L EL
Sbjct: 15  DPGLANAVKQNLGKQS--VTDLVSQKELSGVQNFNGDNSNIQSLAGM----QFFTNLKEL 68

Query: 211 RLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS 270
            LS+  +             L++LT L+ L ++ N         L   + +    L    
Sbjct: 69  HLSHNQISDLS--------PLKDLTKLEELSVNRNR--------LKNLNGIPSACLSRLF 112

Query: 271 LQGT-ISD--AIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEI 327
           L    + D  ++ +L ++  L +  N     ++ +S+     L    L  + L       
Sbjct: 113 LDNNELRDTDSLIHLKNLEILSIRNN-----KL-KSIVMLGFLS--KLEVLDLH------ 158

Query: 328 LDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTL 387
                    N + +               L + + +  ++L     V    +   +L   
Sbjct: 159 --------GNEITNTG------------GLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

Query: 388 RELQIYDNKL 397
             ++  D + 
Sbjct: 199 NTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 36/195 (18%), Positives = 80/195 (41%), Gaps = 24/195 (12%)

Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLD 289
               L +    +L        +     + S ++  N  N+++Q +++  +   T++  L 
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELH 69

Query: 290 LSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMRSSS 348
           LS N     +I   ++   +L    L  + +++  +  +    +G  S  L  L + ++ 
Sbjct: 70  LSHN-----QI-SDLSPLKDLT--KLEELSVNRNRLKNL----NGIPSACLSRLFLDNNE 117

Query: 349 IYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFAN 408
           +    TD L   +NL  L++ NN +  +     G LS L  L ++ N++    +      
Sbjct: 118 LRD--TDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT---NTGGLTR 170

Query: 409 LTKLSWFRVGGNQLT 423
           L K++W  + G +  
Sbjct: 171 LKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 41/237 (17%)

Query: 577 SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDE 636
              N     L     + +L +    ++ +       + +   +   ++  T L  L +  
Sbjct: 17  GLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSH 72

Query: 637 NEFVGNIPTWFG-ERFSRMLVLILRSNQFHGPLPKTICDLAF--LQILDLADNNLSGAIP 693
           N     I      +  +++  L +  N+      K +  +    L  L L +N L     
Sbjct: 73  N----QISDLSPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELRD--- 120

Query: 694 KCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFN 753
               +L  +  ++                 L I  N      +  +  L  L+ ++   N
Sbjct: 121 --TDSLIHLKNLEI----------------LSIRNNKLKS--IVMLGFLSKLEVLDLHGN 160

Query: 754 TFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS 810
             T      +  ++ +  +D +  +   E  +    L   N +   +        +S
Sbjct: 161 EITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 46/193 (23%)

Query: 102 LLDLKHLSYLDLSSNDFQGVQIPRFIG-SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFL 160
           L DL  L  L ++ N     ++    G     L  L L + +        L +L +L+ L
Sbjct: 81  LKDLTKLEELSVNRN-----RLKNLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEIL 133

Query: 161 DLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHF 220
            + +N         L  +  L                      L  L  L L    + + 
Sbjct: 134 SIRNNK--------LKSIVMLGF--------------------LSKLEVLDLHGNEITNT 165

Query: 221 PTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIG 280
                    GL  L  +  +DL      +    +  +        +++   +      I 
Sbjct: 166 G--------GLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT--NTVKDPDGRWISPYYIS 215

Query: 281 NLTSVSWLDLSIN 293
           N  S     +   
Sbjct: 216 NGGSYVDGCVLWE 228

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 15/190 (7%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFI-GSMRNLRYLNLSDTQFVGMIPPQ-LGNLSDLQ 158
           A  +L ++S + +S +     Q+      ++  + ++ + +T+ +  I P  L  L  L+
Sbjct: 50  AFSNLPNISRIYVSIDV-TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108

Query: 159 FLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLL-ELRLSNCS 216
           FL + +  L    ++  +        L++   N    S  + A   L +    L+L N  
Sbjct: 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITD-NPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 217 LHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYK--FSPLECLNLRNNSLQGT 274
                     +     N T L  + L+ N + + I    +   +S    L++   S+   
Sbjct: 168 FTS-------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

Query: 275 ISDAIGNLTS 284
            S  + +L  
Sbjct: 221 PSKGLEHLKE 230

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 43/245 (17%)

Query: 131 RNLRYLNLSDTQFVGMIPPQ-LGNLSDLQFLDLSSNY-LYVDNVWWLSGLSFLEHLDLRS 188
            + + L L +T     IP     NL ++  + +S +  L          LS + H+++R+
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
                  D       LP L  L + N  L  FP L       + +      L++  N + 
Sbjct: 90  TRNLTYIDPDALKE-LPLLKFLGIFNTGLKMFPDLT-----KVYSTDIFFILEITDNPYM 143

Query: 249 SSIPDWLYK--FSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMAN 306
           +SIP   ++   +    L L NN    ++     N T +  + L+ N  L   I +    
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT-VIDKDA-- 199

Query: 307 FCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTL 366
           F  + S     + +S                 + +L                   +L  L
Sbjct: 200 FGGVYS-GPSLLDVS--------------QTSVTAL-------------PSKGLEHLKEL 231

Query: 367 NLANN 371
              N 
Sbjct: 232 IARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 29/221 (13%)

Query: 361 RNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGN 420
            +  TL L    +  +   +F  L  +  + +  +     L    F NL+K++   +   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 421 Q-LTFEVKHDWIPP------FQLVALGLHNCYVGSRFPQ--WLHSQKHLQYLNLL-NSRI 470
           + LT+      I P        L  LG+ N  +   FP    ++S      L +  N  +
Sbjct: 91  RNLTY------IDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYM 143

Query: 471 SDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPL-----V 525
           + I    F    ++   L +  N F          T+L  + +N N     +       V
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNY 566
            S    LD S  S + ++           + L+ L   + +
Sbjct: 204 YSGPSLLDVSQTSVT-ALPSKGL------EHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 39/224 (17%)

Query: 204 LPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLEC 263
            PS   L+L    L   P+ A        NL ++  + +  +     +            
Sbjct: 30  PPSTQTLKLIETHLRTIPSHA------FSNLPNISRIYVSIDVTLQQLE----------- 72

Query: 264 LNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ- 322
                       S +  NL+ V+ +++     L   I         L    L+ + +   
Sbjct: 73  ------------SHSFYNLSKVTHIEIRNTRNLT-YIDPDA--LKEL--PLLKFLGIFNT 115

Query: 323 EISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQL--GQFRNLVTLNLANNSIVGLIPES 380
            +    D+     ++    L++  +     +      G     +TL L NN    +   +
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175

Query: 381 FGQLSTLRELQIYDNKLNGTLSEFHFANL-TKLSWFRVGGNQLT 423
           F   + L  + +  NK    + +  F  + +  S   V    +T
Sbjct: 176 F-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 30/225 (13%), Positives = 72/225 (32%), Gaps = 22/225 (9%)

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPI-SLKNCTALASLDVDENE 638
           + + LKL          ++  ++ ++  +Y+  +    ++   S  N + +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 639 FVGNIPTWFGERFSRMLVLILRSNQFHG-PLPKTICDLAFLQILDLADNNLSGAIPKCIS 697
            +  I     +    +  L + +      P    +       IL++ DN    +IP    
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV--- 148

Query: 698 NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTG 757
                    +F G      +      L +  N F+  +     N   L ++  + N +  
Sbjct: 149 --------NAFQG------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT 193

Query: 758 RIPESI--GTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN 800
            I +    G       +D S   ++    + +  L  L   N   
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 11/145 (7%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL--GNLSDLQ 158
           AL +L  L +L + +   +       + S      L ++D  ++  IP     G  ++  
Sbjct: 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159

Query: 159 FLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLE-LRLSNCSL 217
            L L +N       +  +G         ++  L+       A   + S    L +S  S+
Sbjct: 160 TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD--AFGGVYSGPSLLDVSQTSV 217

Query: 218 HHFPTLASPIPRGLQNLTSLKHLDL 242
              P       +GL++L  L   + 
Sbjct: 218 TALP------SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 37/240 (15%), Positives = 84/240 (35%), Gaps = 47/240 (19%)

Query: 522 LPLVSSNLVYLDFSNNSF----SGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWM 576
           +P +  +   L           S + S+          ++  + ++ +    ++    + 
Sbjct: 26  IPSLPPSTQTLKLIETHLRTIPSHAFSNL--------PNISRIYVSIDVTLQQLESHSFY 77

Query: 577 SYQNLKVLKLSNNKFSGNLP-NSLGSITSLVWLYLRKNRLSGKIP--ISLKNCTALASLD 633
           +   +  +++ N +    +  ++L  +  L +L +    L    P    + +      L+
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136

Query: 634 VDENEFVGNIPTW-FGERFSRMLVLILRSNQFHGPLPKTICDLAF----LQILDLADNNL 688
           + +N ++ +IP   F    +  L L L +N F      ++   AF    L  + L  N  
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-----SVQGYAFNGTKLDAVYLNKNKY 191

Query: 689 SGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFS---GEILSEVTNLKAL 745
              I K            +F G      +    SLLD+S+ + +    + L  +  L A 
Sbjct: 192 LTVIDK-----------DAFGG------VYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 54/342 (15%), Positives = 104/342 (30%), Gaps = 49/342 (14%)

Query: 101 ALLDLKHLSYLDLSSNDF--QGVQ--IPRFIGSMRNLRYLNLSDTQF----VGMIPPQL- 151
                  ++ LDLS N+         I  F  +  ++  LNLS           +   L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 152 GNLSDLQFLDLSSNYLYVDNVWWLSGL-----SFLEHLDLRSVNLSKA-----SDWLMAT 201
              +++  L+LS N+L   +   L          +  LDL   + S              
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 202 NTLPSLLELRLSNCSLHHFPTLASPIPRGLQNL-TSLKHLDLDSNHFNSS----IPDWLY 256
               S+  L L    L      +  + + L  +  ++  L+L  N+  S     +  +L 
Sbjct: 137 PA--SITSLNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192

Query: 257 KF-SPLECLNLRNNSLQGT----ISDAI-GNLTSVSWLDLSIN-IGLQG--RIPRSMANF 307
              + +  L+L  N L       ++         V  L+L +N +       +     + 
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSN--GLESLDMRSSSIYG----HLTDQLGQF- 360
            +L++V L    +     E          N   +  +D     I+      +++ + +  
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELS 312

Query: 361 RNLVTLNLANNSI-----VGLIPESFGQLSTLRELQIYDNKL 397
                 +L N  +          E       LRE       L
Sbjct: 313 GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 53/313 (16%), Positives = 105/313 (33%), Gaps = 68/313 (21%)

Query: 123 IPRFIGSMRNLRYLNLSDTQF----VGMIPPQL-GNLSDLQFLDLSSNYLYVDNVWWLSG 177
           +  F      +  L+LS           +        + +  L+LS N L   N   L  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 178 L-----SFLEHLDLRSVNLSKA-----SDWLMATNTLPSLLELRLSNCSLHHFPTLASPI 227
           +     + +  L+L    LS          L A     ++  L L           +S  
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF--TITVLDLGWNDFS--SKSSSEF 129

Query: 228 PRGLQNL-TSLKHLDLDSNHFN----SSIPDWLYKF-SPLECLNLRNNSLQGT----ISD 277
            +   NL  S+  L+L  N         +   L    + +  LNLR N+L       ++ 
Sbjct: 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK 189

Query: 278 AIGNL-TSVSWLDLSIN-IGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCV 335
            + ++  SV+ LDLS N +GL+                         E++ I       +
Sbjct: 190 FLASIPASVTSLDLSANLLGLKS----------------------YAELAYIF----SSI 223

Query: 336 SNGLESLDMRSSSIYG----HLTDQLGQFRNLVTLNLANNSIVGL-------IPESFGQL 384
            N + SL++  + ++G    +L       ++L T+ L  + +  +       +  +F  +
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283

Query: 385 STLRELQIYDNKL 397
             +  +     ++
Sbjct: 284 QKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 57/365 (15%), Positives = 115/365 (31%), Gaps = 72/365 (19%)

Query: 224 ASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYK-----FSPLECLNLRNNSLQGTISDA 278
           ++P+         +  LDL  N+  S     L +      + +  LNL  NSL    SD 
Sbjct: 11  SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70

Query: 279 IG-----NLTSVSWLDLSIN-IGLQGRIPRS---MANFCNLKSVNLRGVHLSQE-ISEIL 328
           +         +V+ L+LS N +  +          A    +  ++L     S +  SE  
Sbjct: 71  LVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130

Query: 329 DIFSGCVSNGLESLDMRSSSIYGHLTDQLGQF-----RNLVTLNLANNSI----VGLIPE 379
             FS   ++ + SL++R + +    +D+L Q       N+ +LNL  N++       + +
Sbjct: 131 QAFSNLPAS-ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK 189

Query: 380 SFGQL-STLRELQIYDNKLNGT----LSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF 434
               + +++  L +  N L       L+    +    +    +  N L            
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS-------L 242

Query: 435 QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFP------IRFLKSASQLKFL 488
           + + L   +              KHLQ + L    + ++             +  ++  +
Sbjct: 243 ENLKLLKDSL-------------KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

Query: 489 DVGLNQF---------------HGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLD 533
           D    +                 GK    +   Q L  +         L +    L    
Sbjct: 290 DKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNI-PDELRESI 348

Query: 534 FSNNS 538
            +   
Sbjct: 349 QTCKP 353

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 57/210 (27%), Positives = 90/210 (42%), Gaps = 37/210 (17%)

Query: 214 NCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG 273
           +CS      + S IP         K LDL SN  +S      ++ + L  L L +N LQ 
Sbjct: 22  DCSSKKLTAIPSNIP------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75

Query: 274 TISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG 333
             +     L ++  L ++ N  LQ  +P  +  F  L  VNL  + L +           
Sbjct: 76  LPAGIFKELKNLETLWVTDN-KLQ-ALPIGV--FDQL--VNLAELRLDR----------- 118

Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393
              N L+SL      ++  LT        L  L+L  N +  L    F +L++L+EL++Y
Sbjct: 119 ---NQLKSL---PPRVFDSLT-------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165

Query: 394 DNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
           +N+L   + E  F  LT+L   ++  NQL 
Sbjct: 166 NNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 39/192 (20%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQFLDLS 163
           L  L  L L+ N  Q +    F   ++NL  L ++D +    +P  +   L +L  L L 
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKE-LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 164 SNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTL 223
            N            L  L                    ++L  L  L L    L      
Sbjct: 118 RN-----------QLKSLPP---------------RVFDSLTKLTYLSLGYNELQS---- 147

Query: 224 ASPIPRGL-QNLTSLKHLDLDSNHFNSSIPDWLY-KFSPLECLNLRNNSLQGTISDAIGN 281
              +P+G+   LTSLK L L +N     +P+  + K + L+ L L NN L+     A  +
Sbjct: 148 ---LPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 282 LTSVSWLDLSIN 293
           L  +  L L  N
Sbjct: 204 LEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 10/163 (6%)

Query: 132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNL 191
           + + L+L   +   +       L+ L+ L L+ N L          L  LE L +    L
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 192 SKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSI 251
                     + L +L ELRL    L   P      PR   +LT L +L L  N    S+
Sbjct: 98  QALPI--GVFDQLVNLAELRLDRNQLKSLP------PRVFDSLTKLTYLSLGYNEL-QSL 148

Query: 252 PDWLY-KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
           P  ++ K + L+ L L NN L+     A   LT +  L L  N
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 46/219 (21%)

Query: 181 LEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGL-QNLTSLKH 239
            + LDL+S  LS       A + L  L  L L++  L         +P G+ + L +L+ 
Sbjct: 39  TKKLDLQSNKLSSLPS--KAFHRLTKLRLLYLNDNKL-------QTLPAGIFKELKNLET 89

Query: 240 LDLDSNHFNS---SIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGL 296
           L +  N   +    + D L     L  L L  N L+        +LT +++L L  N  L
Sbjct: 90  LWVTDNKLQALPIGVFDQLVN---LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-EL 145

Query: 297 QGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQ 356
           Q  +P+ +  F  L   +L+ + L               +N L+ +       +  LT  
Sbjct: 146 Q-SLPKGV--FDKL--TSLKELRLY--------------NNQLKRV---PEGAFDKLT-- 181

Query: 357 LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDN 395
                 L TL L NN +  +   +F  L  L+ LQ+ +N
Sbjct: 182 -----ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQFLDLS 163
           LK+L  L ++ N  Q + I  F   + NL  L L   Q    +PP++  +L+ L +L L 
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQ-LVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLG 141

Query: 164 SNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTL 223
            N L          L+ L+ L L +  L +  +   A + L  L  L+L N  L      
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG--AFDKLTELKTLKLDNNQL------ 193

Query: 224 ASPIPRGL-QNLTSLKHLDLDSNHFNSSIPDWLY 256
              +P G   +L  LK L L  N ++ +    +Y
Sbjct: 194 -KRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIY 226

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 65/450 (14%), Positives = 139/450 (30%), Gaps = 44/450 (9%)

Query: 78  LELNLRNPSTSNPRSMLVGKVNPALLDLK---HLSYLDLSSNDFQGVQIP---RFIGSMR 131
            ++ + N    +P +++        ++LK   H +  +L  + + G   P       S  
Sbjct: 46  RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105

Query: 132 NLRYLNLSDTQFVGMIPPQLG-NLSDLQFLDLSSNYLYVDNVWW--LSGLSFLEHLDLRS 188
            L  + L            +  +  + + L LSS   +  +      +    L+ LDLR 
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165

Query: 189 VNLSKASDWLMA--TNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNH 246
            ++   S   ++   +T  SL+ L +S           S + R +    +LK L L+   
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCL---ASEVSFSALERLVTRCPNLKSLKLNRAV 222

Query: 247 FNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWL----DLSINIGLQGRIPR 302
               +   L +   LE L     + +       G   ++S       LS           
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282

Query: 303 SMANFC-NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFR 361
           ++ + C  L ++NL    +     +++ +   C    L+ L +        L       +
Sbjct: 283 AVYSVCSRLTTLNLSYATVQSY--DLVKLLCQCPK--LQRLWVLDYIEDAGLEVLASTCK 338

Query: 362 NLVTLNLANNSIVGLIPES----------FGQLSTLRELQIYDNKLNGT----------- 400
           +L  L +  +    + P                  L  +  +  ++              
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398

Query: 401 LSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHL 460
           ++ F    +   +   +    L             L  L L        F       K +
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKM 458

Query: 461 QYLNLLNSRISDIFPIRFLKSASQLKFLDV 490
           + L++  +  SD+     L     L+ L++
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 62/334 (18%), Positives = 113/334 (33%), Gaps = 51/334 (15%)

Query: 178 LSFLE-HLDLRSVNL-SKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLT 235
            SF++   D  SV+L  K+  W           ++ + NC      T+    P+ ++++ 
Sbjct: 18  FSFIQLDKDRNSVSLVCKS--WYEIERW--CRRKVFIGNCYAVSPATVIRRFPK-VRSVE 72

Query: 236 -----SLKHLDLDSNHFNSSIPDWLYKFSP----LECLNLRNNSLQ----GTISDAIGNL 282
                     +L  + +   +  W+   S     LE + L+   +       I+ +  N 
Sbjct: 73  LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNF 132

Query: 283 TSVSWLDLSINIGLQGRIPRSMANFC-NLKSVNLRGVHLSQEISEILDIFSGCVSNGLES 341
                L LS   G       ++A  C NLK ++LR   +       L  F    ++ L S
Sbjct: 133 KV---LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS-LVS 188

Query: 342 LDMRSSSIYGHLTDQ-----LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNK 396
           L++  S +   ++       + +  NL +L L     +  +     +   L EL      
Sbjct: 189 LNI--SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL-----G 241

Query: 397 LNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHS 456
             G  +E      + LS    G  +L          P  L A+    C            
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV-YSVC------------ 288

Query: 457 QKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDV 490
              L  LNL  + +     ++ L    +L+ L V
Sbjct: 289 -SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 17/235 (7%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLS- 163
              L+ L+LS    Q   + + +     L+ L + D      +        DL+ L +  
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 164 SNYLYVDNVWWLS---------GLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214
           S    ++    L+         G   LE +      ++ A+   +A N  P++   RL  
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN-RPNMTRFRLCI 406

Query: 215 CSLHHFPTLASPI-----PRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNN 269
                   L            +++   L+ L L     +            +E L++   
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466

Query: 270 SL-QGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQE 323
                 +   +    S+  L++         +  + +    ++S+ +    +S  
Sbjct: 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 3e-09
 Identities = 40/273 (14%), Positives = 84/273 (30%), Gaps = 32/273 (11%)

Query: 155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214
            DL    L+            +G    +   L          W   + T   L    LS 
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE---CWCRDSATDEQLFRCELSV 358

Query: 215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT 274
                  +        L++   L+ L+ ++     +I   +    PL             
Sbjct: 359 EKSTVLQSE-------LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-- 409

Query: 275 ISDAIGNLTSVSWLDLSINIGLQ----GRIPRSMANFCNLKSVNLRGVHLSQEISEILDI 330
                  L +V  +  +    L+             + +++ ++L    L+      L  
Sbjct: 410 ------TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-----LCH 458

Query: 331 FSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLREL 390
               +   +  LD+  + +   L   L   R L  L  ++N++  +  +    L  L+EL
Sbjct: 459 LEQLLL--VTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENV--DGVANLPRLQEL 513

Query: 391 QIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
            + +N+L  + +     +  +L    + GN L 
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 6e-09
 Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 7/157 (4%)

Query: 81  NLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSD 140
            +R     + RS  + + +   ++   +  L L+  D   +     +  +  + +L+LS 
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQLLLVTHLDLSH 472

Query: 141 TQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMA 200
            +    +PP L  L  L+ L  S N L  +NV  ++ L  L+ L L +  L +++  +  
Sbjct: 473 NRLRA-LPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAA-IQP 528

Query: 201 TNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSL 237
             + P L+ L L   SL     +   +   L +++S+
Sbjct: 529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 48/333 (14%), Positives = 88/333 (26%), Gaps = 50/333 (15%)

Query: 180 FLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPR-GLQNLTSLK 238
              H+      LS      +   +    L L +    L           R     L  L 
Sbjct: 246 CCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLP 305

Query: 239 HLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQG 298
              L+      +           +   L  +  +    D       +   +LS+      
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVEK--ST 362

Query: 299 RIPRSMANFCNLKSV----------------NLRGVHLSQEISEILDIFSGCVSNGLESL 342
            +   + +   L+ +                 L  +   +E  +               L
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422

Query: 343 DMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLS 402
           D   S      +    ++ ++  L+LA+  +  L      QL  +  L +  N+L     
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRL--RAL 478

Query: 403 EFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQY 462
               A L  L   +   N L        +        G+ N                LQ 
Sbjct: 479 PPALAALRCLEVLQASDNALEN------VD-------GVANLP-------------RLQE 512

Query: 463 LNLLNSRISDIFPIRFLKSASQLKFLDVGLNQF 495
           L L N+R+     I+ L S  +L  L++  N  
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 3e-08
 Identities = 57/328 (17%), Positives = 107/328 (32%), Gaps = 34/328 (10%)

Query: 494 QFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNE 553
            F   ++  ++   LL +   +            N     +  +  + S++  L      
Sbjct: 260 CFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFR 319

Query: 554 TKSLEGLKLTDNYLQGEIPDCW----MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLY 609
                     +  L  + P+CW     + + L   +LS  K S  L + L S   L  L 
Sbjct: 320 VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK-STVLQSELESCKELQELE 378

Query: 610 LRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP 669
                    I + ++    L        E +    T       R   L    ++F     
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEK----ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENS 434

Query: 670 KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRN 729
               + A +++L LA  +L+      + +L                E L LV+ LD+S N
Sbjct: 435 VLKMEYADVRVLHLAHKDLT-----VLCHL----------------EQLLLVTHLDLSHN 473

Query: 730 NFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG-EIPQSMS 788
                +   +  L+ L+ +  S N     +   +  +  L+ +    N+L      Q + 
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 789 SLTFLNHLNLSNNNLTGKIPLSTQLQSF 816
           S   L  LNL  N+L  +  +  +L   
Sbjct: 531 SCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 33/261 (12%), Positives = 68/261 (26%), Gaps = 37/261 (14%)

Query: 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFH 405
                            L    L+      ++         L+EL+  +NK         
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEP-ENKWCLLTIILL 391

Query: 406 FANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNL 465
              L  L + +     L +      + P +   L                    ++ L+L
Sbjct: 392 MRALDPLLYEK---ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 466 LNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV 525
            +  ++ +  +  L     +  LD+  N+       L     L  L  + N +     + 
Sbjct: 449 AHKDLTVLCHLEQLLL---VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 505

Query: 526 S-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVL 584
           +   L  L   NN            R+ ++ +++ L                S   L +L
Sbjct: 506 NLPRLQELLLCNN------------RLQQSAAIQPLV---------------SCPRLVLL 538

Query: 585 KLSNNKFSGNLPNSLGSITSL 605
            L  N            +  +
Sbjct: 539 NLQGNSLC-QEEGIQERLAEM 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 1e-08
 Identities = 75/510 (14%), Positives = 144/510 (28%), Gaps = 141/510 (27%)

Query: 90  PRSMLVGKVNPALLDLKHLSYLDL--------SSNDFQGVQIPRFIGSM-RNLRYLNLSD 140
            R     K+  ALL+L+    + +        +          +    M   + +LNL +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 141 TQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMA 200
                 +   L  L       +  N        W S      ++ LR  ++      L+ 
Sbjct: 192 CNSPETVLEMLQKL----LYQIDPN--------WTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 201 TNTLP-SLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDL---------DSNHFNS- 249
           +      LL L                    +QN  +    +L              +  
Sbjct: 240 SKPYENCLLVL------------------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 250 --------SIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIP 301
                   S+       +P E  +L    L     D    + + +   LSI I    R  
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDG 340

Query: 302 RSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFR 361
            +  +  N K VN           ++  I    ++  LE  + R       + D+L  F 
Sbjct: 341 LATWD--NWKHVN---------CDKLTTIIESSLNV-LEPAEYR------KMFDRLSVFP 382

Query: 362 NLVTLNLANNSIVGLIPESFGQLSTL-RELQIYDNKLNGTLSEFHFANLTKLSW--FRVG 418
                          IP     LS +  ++   D  +   +++ H  +L +       + 
Sbjct: 383 PSA-----------HIPTIL--LSLIWFDVIKSDVMV--VVNKLHKYSLVEKQPKESTIS 427

Query: 419 GNQLTFEVKHDWIPPFQLVALGLH----NCYVGSR-FPQWLHSQKHL-----QYL----- 463
              +  E+K   +      A  LH    + Y   + F        +L      ++     
Sbjct: 428 IPSIYLELK---VKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 464 NLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLP 523
           N+ +     +F + FL      +FL+        KI + +            N     L 
Sbjct: 483 NIEHPERMTLFRMVFL----DFRFLE-------QKIRHDS---------TAWNASGSILN 522

Query: 524 LVSSNLVYLDF---SNNSFS---GSISHFL 547
            +     Y  +   ++  +     +I  FL
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFL 552

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 6e-08
 Identities = 89/637 (13%), Positives = 189/637 (29%), Gaps = 164/637 (25%)

Query: 239 HLDLDSN----HFNSSIPDWLYKF-SPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
           H+D ++      +   +  +   F    +C +++ +  +  +S            ++   
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKE----------EIDHI 54

Query: 294 IGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHL 353
           I  +  +  ++  F  L S     V   + + E+L I    + + +++   + S +    
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQ--KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 354 TDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLS 413
            +Q    R+     L N+       + F + +  R       KL   L E     L    
Sbjct: 113 IEQ----RD----RLYND------NQVFAKYNVSRLQPY--LKLRQALLE-----LRPAK 151

Query: 414 WFRV-G----GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQ---WLH-SQKH----- 459
              + G    G          W     +      +  V  +      WL+    +     
Sbjct: 152 NVLIDGVLGSGKT--------W-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 460 LQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQ----LLFLS-VN 514
           L+ L  L  +I   +  R    +     + + ++    ++  L K+      LL L  V 
Sbjct: 199 LEMLQKLLYQIDPNWTSR----SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 515 SNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDC 574
           +        L    L+    +       ++ FL      T  +     +      E+   
Sbjct: 255 NAKAWNAFNLSCKILL---TTRFK---QVTDFL--SAATTTHISLDHHSMTLTPDEVKSL 306

Query: 575 WMSYQNLKVLKLSNNKFSGNLPNSLGSITSLV---------WLYLRKNRLSGKIPISLKN 625
            + Y + +   L     + N P  L  I   +         W ++  ++L+  I  SL  
Sbjct: 307 LLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 626 CTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQIL--DL 683
                 L+  E            + F   L  +   +     +P  +     L ++  D+
Sbjct: 366 ------LEPAEYR----------KMF-DRLS-VFPPSA---HIPTIL-----LSLIWFDV 399

Query: 684 ADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILP-LVSLLDISRNNFSGEILSEVTNL 742
                       I +   +V  K    S+V ++     +S+  I       E+  ++ N 
Sbjct: 400 ------------IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-----ELKVKLENE 442

Query: 743 KALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHL--NLSN 800
            AL             I +     +  +S D     L            F +H+  +L N
Sbjct: 443 YALHR----------SIVDHYNIPKTFDSDDLIPPYLDQ---------YFYSHIGHHLKN 483

Query: 801 NNLTGKIPLSTQL-QSFNASSFAGNDLCGAPLPKNCT 836
                ++ L   +   F    F    +       N +
Sbjct: 484 IEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWNAS 517

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 6e-04
 Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 57/205 (27%)

Query: 72  NVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLK--------HLSYLDLSSNDFQGVQI 123
           ++   +L L   +   S+   ++      +L++ +           YL+L         +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 124 -PRFIGSMRNLRYLNLSDTQFVGMIPPQLGN---------LSDLQFLDLSSNY--LYVDN 171
               +      +  +  D     +IPP L           L +++  +  + +  +++D 
Sbjct: 446 HRSIVDHYNIPKTFDSDD-----LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD- 499

Query: 172 VWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRL------SNC--------SL 217
                   FLE   +R  + +    W  + + L +L +L+        N         ++
Sbjct: 500 ------FRFLEQ-KIRHDSTA----WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 218 HHFPTLASPIPRGLQNLTSLKHLDL 242
             F      +P+  +NL   K+ DL
Sbjct: 549 LDF------LPKIEENLICSKYTDL 567

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 23/253 (9%)

Query: 52  RLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTS-NPRSMLVGKVNPALLDLKHLSY 110
           R      D        +   N+   +    L     +       + +          + +
Sbjct: 38  RWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH 97

Query: 111 LDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVD 170
           +DLS++  +   +   +     L+ L+L   +    I   L   S+L  L+LS    + +
Sbjct: 98  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 157

Query: 171 N--VWWLSGLSFLEHLDLRS-VNLSKASDWLMATNTLPSLLELRLSNCSL----HHFPTL 223
                 LS  S L+ L+L    + ++    +   +   ++ +L LS            TL
Sbjct: 158 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217

Query: 224 ASPIPRGLQNLTSLKHLDL-DSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISD----A 278
                   +   +L HLDL DS    +      ++ + L+ L+L        I       
Sbjct: 218 V-------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD---IIPETLLE 267

Query: 279 IGNLTSVSWLDLS 291
           +G + ++  L + 
Sbjct: 268 LGEIPTLKTLQVF 280

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 70/477 (14%), Positives = 135/477 (28%), Gaps = 59/477 (12%)

Query: 103 LDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDL 162
             +   +   ++          R      NLR L L       M      N        +
Sbjct: 45  FKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWV 104

Query: 163 SSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPT 222
           +            + L  L+ +  R + +S      +A      L  L+L  CS   F T
Sbjct: 105 TEI---------SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS--GFTT 153

Query: 223 LASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSP----LECLNLRNNSLQGTISDA 278
               +   + +   +K L ++ + F+     WL++ +     LE LN         IS  
Sbjct: 154 DG--LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK-ISPK 210

Query: 279 -----IGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG 333
                  N  S+  + +     L+       A           G  L+++I       + 
Sbjct: 211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANL----EEFCGGSLNEDIGMPEKYMNL 266

Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVG-LIPESFGQLSTLRELQI 392
                L  L +        +         +  L+L    +          +   L  L+ 
Sbjct: 267 VFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325

Query: 393 YDNKLNGTLSEF--HFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALG---------- 440
            +   +  L     +   L +L     G ++   E +   +    L+AL           
Sbjct: 326 RNVIGDRGLEVLAQYCKQLKRLR-IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384

Query: 441 LHNCYVG----SRFPQWLHSQKHLQYLNLLN-SRISDIFP----IRFLKSASQLKFLDVG 491
           ++   +          +L +    + + L    RI+D+         L    +L+     
Sbjct: 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

Query: 492 LNQFH------GKISNLTKNTQLLFLSVNSNNMSGPLPLVSS--NLVYLDFSNNSFS 540
           L Q          I   + N + + L     +  G +       NL  L+     FS
Sbjct: 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 68/543 (12%), Positives = 145/543 (26%), Gaps = 106/543 (19%)

Query: 281 NLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLE 340
            + S +   +++ +       R    F NL+S+ L+G   +   + I + + G V+  + 
Sbjct: 46  KIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVT 105

Query: 341 SLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSI--VGLIPESFGQLSTLRELQIYDNKLN 398
            +                  R L +++     +  + L   +  +   L  L++      
Sbjct: 106 EI--------------SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151

Query: 399 GTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLH--- 455
            T          +                       ++  L +       +  +WLH   
Sbjct: 152 TTDGLLSIVTHCR-----------------------KIKTLLMEESSFSEKDGKWLHELA 188

Query: 456 -SQKHLQYLNLLN---SRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFL 511
                L+ LN      ++IS        ++   L  + VG  +    +        L   
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 512 SVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLK-LTDNYLQGE 570
              S N    +P    NLV+                           GL  +  N +   
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFP--------------------RKLCRLGLSYMGPNEMPIL 288

Query: 571 IPDCWMSYQNLKVLKLSNNKFSGN-LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTAL 629
            P        ++ L L             +    +L  L  R       + +  + C  L
Sbjct: 289 FPFA----AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344

Query: 630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS 689
             L ++       +    G    R L+ + +                 L+ + +  ++++
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQG-------------CQELEYMAVYVSDIT 391

Query: 690 ----GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKAL 745
                +I   + NL                 ++ L     I+       + S +   K L
Sbjct: 392 NESLESIGTYLKNLCDF-------------RLVLLDREERITDLPLDNGVRSLLIGCKKL 438

Query: 746 QSINFSFN--TFTGRIPESIGTM-RALESVDFSVNQLSGE-IPQSMSSLTFLNHLNLSNN 801
           +   F       T      IG     +  +       S E + +       L  L +   
Sbjct: 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498

Query: 802 NLT 804
             +
Sbjct: 499 CFS 501

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 43/210 (20%)

Query: 214 NCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG 273
             S                        +L       ++     + + ++ +   N+ ++ 
Sbjct: 4   TVSTPIKQIFPDDAF------AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS 55

Query: 274 TISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG 333
                I  L +V +L L  N  L       ++    L   NL  + L+            
Sbjct: 56  --VQGIQYLPNVRYLALGGN-KLH-----DISALKEL--TNLTYLILT------------ 93

Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393
              N L+SL    + ++  LT       NL  L L  N +  L    F +L+ L  L + 
Sbjct: 94  --GNQLQSL---PNGVFDKLT-------NLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141

Query: 394 DNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
            N+L  +L +  F  LT L+   +  NQL 
Sbjct: 142 HNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 14/141 (9%)

Query: 111 LDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVD 170
           L L++N+F  ++       +  LR +N S+ +   +        S +  + L+SN L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 171 NVWWLSGLSFLEHLDLRSVNLSKASDWLMAT--NTLPSLLELRLSNCSLHHFPTLASPIP 228
                 GL  L+ L LRS  ++     +       L S+  L L +  +         + 
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITC----VGNDSFIGLSSVRLLSLYDNQITT-------VA 145

Query: 229 RG-LQNLTSLKHLDLDSNHFN 248
            G    L SL  L+L +N FN
Sbjct: 146 PGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 13/113 (11%)

Query: 361 RNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGN 420
             L  +N +NN I  +   +F   S + E+ +  N+L   +    F  L  L    +  N
Sbjct: 57  PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSN 115

Query: 421 QLTFEVKHDWIPPF------QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLN 467
           ++T       +          +  L L++  + +  P    +   L  LNLL 
Sbjct: 116 RITC------VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 353 LTDQLGQFR---NLVTLNLA-NNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFAN 408
             D L       NL  L +     +  L       L  LR L I  + L   ++   F  
Sbjct: 20  ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHF 78

Query: 409 LTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHN 443
             +LS   +  N L   +    +    L  L L  
Sbjct: 79  TPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 147 IPPQLGNLSDLQFLDLSSN-YLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLP 205
               L    +L  L + +  +L    +  L GL  L +L +    L   +    A +  P
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP--DAFHFTP 80

Query: 206 SLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
            L  L LS  +L         +        SL+ L L  N  +
Sbjct: 81  RLSRLNLSFNALES-------LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDW-LYKFSPLECLNLRNNSLQGTISDAIGNLTSV 285
               L    +L  L +++      +    L     L  L +  + L+    DA      +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 286 SWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHL 320
           S L+LS N  L+  +        +L+ + L G  L
Sbjct: 83  SRLNLSFN-ALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 204 LPSLLELRLS-NCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLE 262
             +L EL +     L H           L+ L  L++L +  +      PD  +    L 
Sbjct: 30  AENLTELYIENQQHLQHLELRD------LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 263 CLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
            LNL  N+L+      +  L S+  L LS N
Sbjct: 84  RLNLSFNALESLSWKTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 339 LESLDMRSSSIYGHLTDQ-LGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL 397
           L  L + +     HL  + L     L  L +  + +  + P++F     L  L +  N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 398 NGTLSEFHFANLTKLSWFRVGGNQLT 423
             +LS      L+ L    + GN L 
Sbjct: 93  E-SLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 98  VNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQ-LGNLSD 156
               L   ++L+ L + +         R +  +  LR L +  +     + P        
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 157 LQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS 188
           L  L+LS N L   +   + GLS L+ L L  
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 52/314 (16%), Positives = 99/314 (31%), Gaps = 48/314 (15%)

Query: 101 ALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFL 160
           +   L  L  L+L+                       ++  +   +          L  +
Sbjct: 67  SAEVLSSLRQLNLAGV--------------------RMTPVKCTVVAAVLGSGRHALDEV 106

Query: 161 DLSSNYLYVDNVWWL-SGLSFLEHLDLRSVNLSKASDWLMA---TNTLPSLLELRLSNCS 216
           +L+S  L    +  L         L L+  +L   +   +     +    +  LRLSN  
Sbjct: 107 NLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166

Query: 217 LHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN----SSIPDWLYKFSPLECLNLRNNSLQ 272
           L       + +  GL   TS+ HL L            +   L +   L+ LN+  N   
Sbjct: 167 LT--AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224

Query: 273 GT----ISDAIGNLTSVSWLDLSIN-IGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEI 327
            T    ++ A     S+  L L  N +  +GR  + + +         R V    E + +
Sbjct: 225 DTAALALARAAREHPSLELLHLYFNELSSEGR--QVLRDLGGAAEGGARVVVSLTEGTAV 282

Query: 328 LDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQL--- 384
            + +S  +S    +L+            ++ +   L+  +L ++    L P    QL   
Sbjct: 283 SEYWSVILSEVQRNLNS-------WDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRV 335

Query: 385 -STLRELQIYDNKL 397
              +R L       
Sbjct: 336 EGEVRALLEQLGSS 349

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 77  ILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYL 136
           + EL L N           GK+     +  +L +L L +     V     +  +  L+ L
Sbjct: 26  VRELVLDN------CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKL 76

Query: 137 NLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLY-VDNVWWLSGLSFLEHLDLRSVNLSKAS 195
            LS+ +  G +      L +L  L+LS N L  +  +  L  L  L+ LDL +  ++  +
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

Query: 196 D-WLMATNTLPSLLEL 210
           D        LP L  L
Sbjct: 137 DYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 132 NLRYLNLSDTQF-VGMIPPQLGNLSDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSV 189
            +R L L + +   G I        +L+FL L +  L  V N   L  L  L+ L+L   
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSEN 81

Query: 190 NLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSN 245
            +    D L     LP+L  L LS   L    TL       L+ L  LK LDL + 
Sbjct: 82  RIFGGLDMLA--EKLPNLTHLNLSGNKLKDISTLEP-----LKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 306 NFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVT 365
               ++ + L     +    +I  + +  V+  LE L + +  +       L +   L  
Sbjct: 22  TPAAVRELVLDNCKSN--DGKIEGLTAEFVN--LEFLSLINVGL--ISVSNLPKLPKLKK 75

Query: 366 LNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
           L L+ N I G +     +L  L  L +  NKL    +      L  L    +   ++T
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 724 LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEI 783
           LD  ++N  G+I         L+ ++         +  ++  +  L+ ++ S N++ G +
Sbjct: 31  LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 784 PQSMSSLTFLNHLNLSNNNLT 804
                 L  L HLNLS N L 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLK 108

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 7e-06
 Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 18/167 (10%)

Query: 93  MLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLG 152
           +    ++P L  +  L+ L +       + I +      NL+ L +        +   + 
Sbjct: 159 IEQVDLSPVLDAMPLLNNLKIKGT--NNLSIGKK--PRPNLKSLEIISGGLPDSVVEDIL 214

Query: 153 --NLSDLQFLDL---SSNYLYVDNVWWLSGL------SFLEHLDLRSVNLSKASDWLMAT 201
             +L +L+ L L     +Y +  ++     L        L+ L +           +   
Sbjct: 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274

Query: 202 N-TLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHF 247
           +  LP L  + +S   L      A  +   +  +  LK +++  N+ 
Sbjct: 275 SDILPQLETMDISAGVLTDEG--ARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 29/187 (15%)

Query: 230 GLQNLTSLKHLDLDSNHFNSSIPDWLY--KFSPLECLNLRNNSLQGTISDAIGNLTSVSW 287
           G +   +LK L++ S     S+ + +       LE L L            +     +  
Sbjct: 188 GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF- 246

Query: 288 LDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSS 347
                          S   F NLK + +        + E+       +   LE++D+ + 
Sbjct: 247 ---------------SKDRFPNLKWLGIVDAEEQNVVVEMF--LESDILPQLETMDISAG 289

Query: 348 SIYG----HLTDQLGQFRNLVTLNLANNSI----VGLIPESFGQLSTLRELQIYDNKLN- 398
            +       L D + + ++L  +N+  N +       + +S      + + Q YD+  + 
Sbjct: 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYSY 349

Query: 399 GTLSEFH 405
             ++E  
Sbjct: 350 PMITELE 356

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 12/141 (8%)

Query: 78  LELNLRNPST------SNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMR 131
           LEL  R PS        N RS           + + L +L   +     +     +  + 
Sbjct: 9   LELRNRTPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSIAN---LPKLN 64

Query: 132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLY-VDNVWWLSGLSFLEHLDLRSVN 190
            L+ L LSD +  G +        +L  L+LS N +  +  +  L  L  L+ LDL +  
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

Query: 191 LSKASD-WLMATNTLPSLLEL 210
           ++  +D        LP L  L
Sbjct: 125 VTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 12/116 (10%)

Query: 132 NLRYLNLSDTQF-VGMIPPQLGNLSDLQFLDLSSNYLY-VDNVWWLSGLSFLEHLDLRSV 189
           +++ L L +++   G +        +L+FL   +  L  + N   L  L+ L+ L+L   
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDN 74

Query: 190 NLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSN 245
            +S   + L      P+L  L LS   +    T+       L+ L +LK LDL + 
Sbjct: 75  RVSGGLEVLA--EKCPNLTHLNLSGNKIKDLSTIEP-----LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 306 NFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVT 365
              ++K + L          ++  +        LE L   +  +   + + L +   L  
Sbjct: 15  TPSDVKELVLDN--SRSNEGKLEGLTDEFEE--LEFLSTINVGL-TSIAN-LPKLNKLKK 68

Query: 366 LNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
           L L++N + G +     +   L  L +  NK+    +      L  L    +   ++T
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 34/146 (23%)

Query: 230 GLQNLTSLKHLDLDSNHFNS-SIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWL 288
             +  + +K L LD++  N   +     +F  LE L+  N  L  +I++ +  L  +  L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 289 DLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSS 348
           +LS N                              +S  L++ +    N L  L++  + 
Sbjct: 70  ELSDN-----------------------------RVSGGLEVLAEKCPN-LTHLNLSGNK 99

Query: 349 IYGHLT-DQLGQFRNLVTLNLANNSI 373
           I    T + L +  NL +L+L N  +
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 555 KSLEGLKLTDNYLQ--GEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRK 612
           + LE L   +  L     +P        LK L+LS+N+ SG L        +L  L L  
Sbjct: 42  EELEFLSTINVGLTSIANLPKLN----KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 613 NRLSG-KIPISLKNCTALASLDVDENE 638
           N++        LK    L SLD+   E
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 724 LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEI 783
           LD SR+N  G++       + L+ ++      T  I  ++  +  L+ ++ S N++SG +
Sbjct: 24  LDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGL 80

Query: 784 PQSMSSLTFLNHLNLSNNNLT 804
                    L HLNLS N + 
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNN 517
             ++ L L NSR ++           +L+FL          I+NL K  +L  L ++ N 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNR 75

Query: 518 MSGPLPLVSS---NLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDN 565
           +SG L +++    NL +L+ S N     +S     +    ++L+ L L + 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKL--ENLKSLDLFNC 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 13/150 (8%)

Query: 97  KVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSD 156
           K++  L  LK   +L LS+N+ + +     +  M NLR L+L        I         
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKK-IENLDAVADT 94

Query: 157 LQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN- 214
           L+ L +S N +  +     +  L  L  L + +  ++   + +     L  L +L L+  
Sbjct: 95  LEELWISYNQIASLSG---IEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGN 150

Query: 215 -CSLHHFPTLASPIPRG--LQNLTSLKHLD 241
                +    A+   R   ++ L +LK LD
Sbjct: 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 43/178 (24%)

Query: 227 IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVS 286
           +   L  L + KHL L +N+    I   L     L  L+L  N ++  I +      ++ 
Sbjct: 40  MDATLSTLKACKHLALSTNNI-EKI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 287 WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMR 345
            L +S N     +I  S++    L   NLR +++S  +I+   +I               
Sbjct: 97  ELWISYN-----QI-ASLSGIEKLV--NLRVLYMSNNKITNWGEI--------------- 133

Query: 346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ-------LSTLRELQIYDNK 396
                    D+L     L  L LA N +     E+          +  L  L+  D  
Sbjct: 134 ---------DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 20/147 (13%)

Query: 103 LDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDL 162
           +       ++L        ++   + +++  ++L LS      +    L  + +L+ L L
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSL 77

Query: 163 SSNYLYVDNVWWLSGLSF----LEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLH 218
             N +       +  L      LE L +    ++  S        L +L  L +SN  + 
Sbjct: 78  GRNLIKK-----IENLDAVADTLEELWISYNQIASLSGI----EKLVNLRVLYMSNNKIT 128

Query: 219 HFPTLASPIPRGLQNLTSLKHLDLDSN 245
           ++  +       L  L  L+ L L  N
Sbjct: 129 NWGEIDK-----LAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 14/138 (10%)

Query: 463 LNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMS--G 520
           L+ +   I  +     L +    K L +  N    KIS+L+    L  LS+  N +    
Sbjct: 30  LHGMIPPIEKMDAT--LSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIKKIE 86

Query: 521 PLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQ--GEIPDCWMSY 578
            L  V+  L  L  S N  + S+S        +  +L  L +++N +   GEI D   + 
Sbjct: 87  NLDAVADTLEELWISYNQIA-SLSGI-----EKLVNLRVLYMSNNKITNWGEI-DKLAAL 139

Query: 579 QNLKVLKLSNNKFSGNLP 596
             L+ L L+ N    +  
Sbjct: 140 DKLEDLLLAGNPLYNDYK 157

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 129 SMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLR 187
           +    R L+L   + + +I      L     +D S N +  +D       L  L+ L + 
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTLLVN 72

Query: 188 SVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSN 245
           +  + +  + L     LP L EL L+N SL     L       L +L SL +L +  N
Sbjct: 73  NNRICRIGEGL--DQALPDLTELILTNNSLVELGDLDP-----LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSS 164
           L     +D S N+ + +        +R L+ L +++ +   +       L DL  L L++
Sbjct: 41  LDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 165 NYLY-VDNVWWLSGLSFLEHLDLRSVNLSKASD-WLMATNTLPSLLEL 210
           N L  + ++  L+ L  L +L +    ++      L     +P +  L
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 23/143 (16%), Positives = 38/143 (26%), Gaps = 35/143 (24%)

Query: 175 LSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNL 234
            +       LDLR   +    +      TL     +  S+  +            G   L
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDNEIRKL--------DGFPLL 63

Query: 235 TSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINI 294
             LK L +++N               L  L L NNS        +  L  +  L      
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS--------LVELGDLDPL------ 109

Query: 295 GLQGRIPRSMANFCNLKSVNLRG 317
                     A+  +L  + +  
Sbjct: 110 ----------ASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 14/123 (11%)

Query: 149 PQLGNLSDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSL 207
            Q  N    + LDL    +  ++N+   + L   + +D     + K   +      L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIRKLDGF----PLLRRL 66

Query: 208 LELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS-SIPDWLYKFSPLECLNL 266
             L ++N  +              Q L  L  L L +N        D L     L  L +
Sbjct: 67  KTLLVNNNRICRIG------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 267 RNN 269
             N
Sbjct: 121 LRN 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 34/163 (20%)

Query: 132 NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNL 191
            +  + L       + P        L+ +DLS+N            +S L          
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-----------ISELAP-------- 73

Query: 192 SKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSI 251
                   A   L SL  L L    +   P          + L SL+ L L++N   + +
Sbjct: 74  -------DAFQGLRSLNSLVLYGNKITELP------KSLFEGLFSLQLLLLNANKI-NCL 119

Query: 252 PDWLY-KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
               +     L  L+L +N LQ         L ++  + L+ N
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 13/113 (11%)

Query: 361 RNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGN 420
           + L  ++L+NN I  L P++F  L +L  L +Y NK+   L +  F  L  L    +  N
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNAN 114

Query: 421 QLTFEVKHDWIPPF------QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLN 467
           ++        +          L  L L++  + +         + +Q ++L  
Sbjct: 115 KIN------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 9/138 (6%)

Query: 111 LDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVD 170
           + L  N  + +    F    + LR ++LS+ Q   + P     L  L  L L  N +   
Sbjct: 37  IRLEQNTIKVIPPGAFSP-YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 171 NVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRG 230
                 GL  L+ L L +  ++       A   L +L  L L +  L             
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVD--AFQDLHNLNLLSLYDNKLQTIAKGT------ 147

Query: 231 LQNLTSLKHLDLDSNHFN 248
              L +++ + L  N F 
Sbjct: 148 FSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
             R+L +L L  N I  L    F  L +L+ L +  NK+N  L    F +L  L+   + 
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLY 136

Query: 419 GNQLT 423
            N+L 
Sbjct: 137 DNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 14/141 (9%)

Query: 362 NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ 421
            +  + L  N+I  + P +F     LR + + +N+++  L+   F  L  L+   + GN+
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 422 LTFEVKHDWIPP------FQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFP 475
           +T       +P       F L  L L+   +            +L  L+L ++++  I  
Sbjct: 92  ITE------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-A 144

Query: 476 IRFLKSASQLKFLDVGLNQFH 496
                    ++ + +  N F 
Sbjct: 145 KGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 36/182 (19%)

Query: 214 NCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG 273
           +C       + + +P       ++  + L+ N      P     +  L  ++L NN +  
Sbjct: 17  DCRGKGLTEIPTNLP------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70

Query: 274 TISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG 333
              DA   L S++ L L  N  +   +P+S+  F  L   +L+ + L+            
Sbjct: 71  LAPDAFQGLRSLNSLVLYGN-KIT-ELPKSL--FEGL--FSLQLLLLNA----------- 113

Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393
              N +  L       +  L        NL  L+L +N +  +   +F  L  ++ + + 
Sbjct: 114 ---NKINCLR---VDAFQDLH-------NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160

Query: 394 DN 395
            N
Sbjct: 161 QN 162

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
            +++L  ++L+NN I  L  +SF  ++ L  L +  N+L   +    F  L  L    + 
Sbjct: 52  NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLH 110

Query: 419 GNQL 422
           GN +
Sbjct: 111 GNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)

Query: 366 LNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFE 425
           L L  N    L+P+       L  + + +N+++ TLS   F+N+T+L    +  N+L   
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC- 92

Query: 426 VKHDWIPP--F----QLVALGLHN 443
                IPP  F     L  L LH 
Sbjct: 93  -----IPPRTFDGLKSLRLLSLHG 111

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 12/160 (7%)

Query: 136 LNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKAS 195
           L+L  T    +       L+ L +L+L  N L   +      L+ L  L L +  L+   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 196 DWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGL-QNLTSLKHLDLDSNHFNSSIPDW 254
             +   + L  L +L L    L         +P G+   LT LK L L++N    SIP  
Sbjct: 100 LGVF--DHLTQLDKLYLGGNQL-------KSLPSGVFDRLTKLKELRLNTNQL-QSIPAG 149

Query: 255 LY-KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSIN 293
            + K + L+ L+L  N LQ     A   L  +  + L  N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNG 399
           E LD++S+ +             L  LNL  N +  L    F  L+ L  L + +N+L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 400 TLSEFHFANLTKLSWFRVGGNQLT 423
           +L    F +LT+L    +GGNQL 
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK 120

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQFLDLS 163
           L  L++L+L  N  Q +    F   +  L  L L++ Q    +P  +  +L+ L  L L 
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDD-LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLG 115

Query: 164 SNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTL 223
            N L          L+ L+ L L +  L        A + L +L  L LS   L      
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQL------ 167

Query: 224 ASPIPRG-LQNLTSLKHLDLDSNHFNSSIPDWLY 256
              +P G    L  L+ + L  N F+ S  + LY
Sbjct: 168 -QSVPHGAFDRLGKLQTITLFGNQFDCSRCEILY 200

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 37/208 (17%)

Query: 214 NCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQG 273
           +C      ++ S IP         + LDL S    +         + L  LNL  N LQ 
Sbjct: 20  DCQGKSLDSVPSGIP------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73

Query: 274 TISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG 333
             +    +LT +  L L+ N  L   +P  +  F +L    L  ++L             
Sbjct: 74  LSAGVFDDLTELGTLGLANN-QLA-SLPLGV--FDHL--TQLDKLYLGG----------- 116

Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY 393
              N L+SL    S ++  LT        L  L L  N +  +   +F +L+ L+ L + 
Sbjct: 117 ---NQLKSL---PSGVFDRLT-------KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163

Query: 394 DNKLNGTLSEFHFANLTKLSWFRVGGNQ 421
            N+L  ++    F  L KL    + GNQ
Sbjct: 164 TNQLQ-SVPHGAFDRLGKLQTITLFGNQ 190

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 9/139 (6%)

Query: 155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN 214
           ++ Q L L  N +          L  L+ L L S  L      +   ++L  L  L L  
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQLTVLDLGT 97

Query: 215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGT 274
             L   P            L  LK L +  N   + +P  + + + L  L L  N L+  
Sbjct: 98  NQLTVLP------SAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSI 150

Query: 275 ISDAIGNLTSVSWLDLSIN 293
              A   L+S++   L  N
Sbjct: 151 PHGAFDRLSSLTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
           +  +LV L L  N + G+ P +F   S ++ELQ+ +NK+   +S   F  L +L    + 
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLY 110

Query: 419 GNQLT 423
            NQ++
Sbjct: 111 DNQIS 115

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
           C+  +V       +   + I              LD+ ++S+         +  +L  L 
Sbjct: 7   CSGTTVECYSQGRTSVPTGI--------PAQTTYLDLETNSLKSLPNGVFDELTSLTQLY 58

Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
           L  N +  L    F +L++L  L +  N+L  +L    F  LT+L    +  NQL 
Sbjct: 59  LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	840
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.84
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.83
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.86
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.38
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.59

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-93  Score=850.42  Aligned_cols=710  Identities=30%  Similarity=0.445  Sum_probs=555.3

Q ss_pred             CCCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceecCCCCCCEEEEEcCCCCCCCCCcccccc---ccccccCC
Q 003200           29 VGCLETERRALLRFKQDLQDPSNRLASWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGK---VNPALLDL  105 (840)
Q Consensus        29 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~---~~~~~~~l  105 (840)
                      +.+.++|++||++||+++.||. .+++|+.+++||.|+||+|+  +|||++|+|++.       .+.|.   +++++.++
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~-------~l~g~~~~l~~~l~~L   76 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK-------PLNVGFSAVSSSLLSL   76 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTS-------CCCEEHHHHHHHTTTC
T ss_pred             ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCC-------CcCCccCccChhHhcc
Confidence            4557899999999999999988 89999888899999999998  689999999996       77888   99999999


Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCC--CCCCCCCCCeEeccCccccCCCcccc-cCCCCCC
Q 003200          106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPP--QLGNLSDLQFLDLSSNYLYVDNVWWL-SGLSFLE  182 (840)
Q Consensus       106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~  182 (840)
                      ++|+.++++.+.+.  .+|..++.+++|++|+|++|.+.+.+|.  .++++++|++|++++|.+....+..+ .++++|+
T Consensus        77 ~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  154 (768)
T 3rgz_A           77 TGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE  154 (768)
T ss_dssp             TTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred             CcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence            99999999999875  4678999999999999999999999998  99999999999999999876666554 8999999


Q ss_pred             EEEccCcCCCCCcchh-hhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 003200          183 HLDLRSVNLSKASDWL-MATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL  261 (840)
Q Consensus       183 ~L~Ls~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  261 (840)
                      +|++++|++++..... ..+.++++|++|++++|.+.+..+        +..+++|++|++++|.+.+.+|. ++++++|
T Consensus       155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L  225 (768)
T 3rgz_A          155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--------VSRCVNLEFLDVSSNNFSTGIPF-LGDCSAL  225 (768)
T ss_dssp             EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--------CTTCTTCCEEECCSSCCCSCCCB-CTTCCSC
T ss_pred             EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--------cccCCcCCEEECcCCcCCCCCcc-cccCCCC
Confidence            9999999998754322 237889999999999999987643        47899999999999999988887 9999999


Q ss_pred             cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhh-ccCCCCCCC
Q 003200          262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIF-SGCVSNGLE  340 (840)
Q Consensus       262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~  340 (840)
                      ++|++++|.+++.+|..+..+++|++|++++ +.+.+.+|..  .+++|++|++++|.+.+.+|..+... +     +|+
T Consensus       226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~-----~L~  297 (768)
T 3rgz_A          226 QHLDISGNKLSGDFSRAISTCTELKLLNISS-NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-----TLT  297 (768)
T ss_dssp             CEEECCSSCCCSCHHHHTTTCSSCCEEECCS-SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-----TCS
T ss_pred             CEEECcCCcCCCcccHHHhcCCCCCEEECCC-CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-----cCC
Confidence            9999999999999999999999999999999 5777777664  66777777777776666555544332 2     566


Q ss_pred             EEEccCCcccccCccccCCCCCCCEEEccCCccccccccc-ccCCCCCCEEEccCCccccccChhhhccCC-CCCEEEcc
Q 003200          341 SLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES-FGQLSTLRELQIYDNKLNGTLSEFHFANLT-KLSWFRVG  418 (840)
Q Consensus       341 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~-~L~~L~L~  418 (840)
                      +|++++|++++.+|..++.+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+.+|. .+.+++ +|++|+++
T Consensus       298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls  376 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLS  376 (768)
T ss_dssp             EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECC
T ss_pred             EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEEcc
Confidence            6666666666666666666666666666666665544443 55566666666666666555554 344444 56666666


Q ss_pred             CcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccc
Q 003200          419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGK  498 (840)
Q Consensus       419 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~  498 (840)
                      +|.+.+.....+..                      ..+++|++|++++|++++..|..+ ..+++|++|++++|.+.+.
T Consensus       377 ~N~l~~~~~~~~~~----------------------~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~  433 (768)
T 3rgz_A          377 SNNFSGPILPNLCQ----------------------NPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGT  433 (768)
T ss_dssp             SSEEEEECCTTTTC----------------------STTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESC
T ss_pred             CCCcCCCcChhhhh----------------------cccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCc
Confidence            66555444333332                      004455555555555554444433 3344455555555544443


Q ss_pred             ccc-ccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccC
Q 003200          499 ISN-LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMS  577 (840)
Q Consensus       499 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  577 (840)
                      ++. +...+                     +|++|++++|.+.+.+|..+    ..+++|++|++++|++++.+|..+.+
T Consensus       434 ~p~~l~~l~---------------------~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~N~l~~~~p~~l~~  488 (768)
T 3rgz_A          434 IPSSLGSLS---------------------KLRDLKLWLNMLEGEIPQEL----MYVKTLETLILDFNDLTGEIPSGLSN  488 (768)
T ss_dssp             CCGGGGGCT---------------------TCCEEECCSSCCCSCCCGGG----GGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ccHHHhcCC---------------------CCCEEECCCCcccCcCCHHH----cCCCCceEEEecCCcccCcCCHHHhc
Confidence            332 22222                     33444444444444444332    33678888888888888888888888


Q ss_pred             CCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEE
Q 003200          578 YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVL  657 (840)
Q Consensus       578 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L  657 (840)
                      +++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+.++++|++|++++|+++|.+|.+++ ....+..+
T Consensus       489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~  567 (768)
T 3rgz_A          489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAA  567 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBCC
T ss_pred             CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhhh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888776 34444333


Q ss_pred             EccC---------C-------------cccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200          658 ILRS---------N-------------QFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR  715 (840)
Q Consensus       658 ~l~~---------n-------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  715 (840)
                      ++..         +             .+.+..+..+..++.++.++++.|.+.|.+|..+..+++|             
T Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L-------------  634 (768)
T 3rgz_A          568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM-------------  634 (768)
T ss_dssp             STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC-------------
T ss_pred             hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc-------------
Confidence            3222         1             2445666777778888889999999999999999888877             


Q ss_pred             ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCe
Q 003200          716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNH  795 (840)
Q Consensus       716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  795 (840)
                            +.|||++|+++|.+|..++++++|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|+.+..+++|++
T Consensus       635 ------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          635 ------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             ------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             ------cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence                  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCCCCCCCCCC
Q 003200          796 LNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGAPLPKNCTM  837 (840)
Q Consensus       796 L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~~~~~~c~~  837 (840)
                      ||+++|+++|.||+.++|++|+..+|.|| +|||.|+. +|..
T Consensus       709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~  750 (768)
T 3rgz_A          709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP  750 (768)
T ss_dssp             EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred             EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence            99999999999999999999999999999 99999997 8974

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.9e-71  Score=660.40  Aligned_cols=618  Identities=28%  Similarity=0.392  Sum_probs=513.0

Q ss_pred             ccccccCCCCCCEEeCCCCCCCCCCccc--cccCCCCCcEEeccCCcccCCCCCCC-CCCCCCCeEeccCccccCCCccc
Q 003200           98 VNPALLDLKHLSYLDLSSNDFQGVQIPR--FIGSMRNLRYLNLSDTQFVGMIPPQL-GNLSDLQFLDLSSNYLYVDNVWW  174 (840)
Q Consensus        98 ~~~~~~~l~~L~~L~Ls~n~~~~~~~p~--~l~~l~~L~~L~Ls~n~i~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~  174 (840)
                      +++.++++++|++|||++|.+.+. +|.  .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|.+....+..
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  170 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG  170 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence            457899999999999999999874 787  89999999999999999999988876 89999999999999998777766


Q ss_pred             ---ccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCC
Q 003200          175 ---LSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSI  251 (840)
Q Consensus       175 ---~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~  251 (840)
                         +.++++|++|++++|.+.+...    +..+++|++|++++|.+.+.++      . ++.+++|++|++++|.+++.+
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~------~-l~~l~~L~~L~Ls~n~l~~~~  239 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP------F-LGDCSALQHLDISGNKLSGDF  239 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC------B-CTTCCSCCEEECCSSCCCSCH
T ss_pred             hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCc------c-cccCCCCCEEECcCCcCCCcc
Confidence               8999999999999999987543    3789999999999999988654      4 899999999999999999999


Q ss_pred             cccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCC-CCCcEEEcCCCcccccchHHHHh
Q 003200          252 PDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANF-CNLKSVNLRGVHLSQEISEILDI  330 (840)
Q Consensus       252 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~  330 (840)
                      |..+.++++|++|++++|.+++.+|..  .+++|++|++++ +.+.+.+|..+... ++|++|++++|.+.+.+|..+..
T Consensus       240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~-n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  316 (768)
T 3rgz_A          240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE-NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS  316 (768)
T ss_dssp             HHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCS-SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred             cHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcC-CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence            999999999999999999999888765  899999999999 78899999998875 99999999999999999999988


Q ss_pred             hccCCCCCCCEEEccCCcccccCccc-cCCCCCCCEEEccCCcccccccccccCCC-CCCEEEccCCccccccChhhhcc
Q 003200          331 FSGCVSNGLESLDMRSSSIYGHLTDQ-LGQFRNLVTLNLANNSIVGLIPESFGQLS-TLRELQIYDNKLNGTLSEFHFAN  408 (840)
Q Consensus       331 ~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~i~~~~~~~  408 (840)
                      ++     +|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+.+++ +|++|++++|.+.+.++. .+..
T Consensus       317 l~-----~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~  390 (768)
T 3rgz_A          317 CS-----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQ  390 (768)
T ss_dssp             CT-----TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTC
T ss_pred             CC-----CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhh
Confidence            88     9999999999999888876 99999999999999999999999999987 999999999999988776 3444


Q ss_pred             --CCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCcc
Q 003200          409 --LTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLK  486 (840)
Q Consensus       409 --l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~  486 (840)
                        +++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..+ ..+++  
T Consensus       391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~--  467 (768)
T 3rgz_A          391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKT--  467 (768)
T ss_dssp             STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTT--
T ss_pred             cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH-cCCCC--
Confidence              7889999999998887666656566666666666666665566666666666666666666555544433 22333  


Q ss_pred             EEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCc
Q 003200          487 FLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNY  566 (840)
Q Consensus       487 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  566 (840)
                                                                |++|++++|++++.+|..    +..+++|++|++++|+
T Consensus       468 ------------------------------------------L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~  501 (768)
T 3rgz_A          468 ------------------------------------------LETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNR  501 (768)
T ss_dssp             ------------------------------------------CCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSC
T ss_pred             ------------------------------------------ceEEEecCCcccCcCCHH----HhcCCCCCEEEccCCc
Confidence                                                      333333334444333332    2336777777777777


Q ss_pred             CccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCC---------
Q 003200          567 LQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN---------  637 (840)
Q Consensus       567 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N---------  637 (840)
                      +++.+|..++.+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+..+..+..+++..+         
T Consensus       502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (768)
T 3rgz_A          502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND  581 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred             cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence            77777777777777777777777777777777777777777777777777777777766665555444331         


Q ss_pred             -------------cccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcc
Q 003200          638 -------------EFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVT  704 (840)
Q Consensus       638 -------------~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  704 (840)
                                   .+.+..+..+. .++.+..++++.|.+.|.+|..+..+++|+.||+++|+++|.+|..+++++.|  
T Consensus       582 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L--  658 (768)
T 3rgz_A          582 GMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--  658 (768)
T ss_dssp             SCCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC--
T ss_pred             cccccccccccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC--
Confidence                         23445555555 57778888999999999999999999999999999999999999999998888  


Q ss_pred             cccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC
Q 003200          705 VKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP  784 (840)
Q Consensus       705 l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  784 (840)
                                       +.|+|++|+++|.+|..++++++|++|||++|+++|.+|..++++++|++||+++|+++|.||
T Consensus       659 -----------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          659 -----------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             -----------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             -----------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence                             999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCeEeccCCc-cccc
Q 003200          785 QSMSSLTFLNHLNLSNNN-LTGK  806 (840)
Q Consensus       785 ~~l~~l~~L~~L~ls~N~-l~g~  806 (840)
                      +. ..+..+....+.+|+ +.|.
T Consensus       722 ~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          722 EM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             SS-SSGGGSCGGGGCSCTEEEST
T ss_pred             Cc-hhhccCCHHHhcCCchhcCC
Confidence            76 345556667778886 7774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.8e-60  Score=556.06  Aligned_cols=587  Identities=19%  Similarity=0.202  Sum_probs=380.4

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEE
Q 003200          106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLD  185 (840)
Q Consensus       106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  185 (840)
                      +++++|+|++|.++++ .+..++++++|++|++++|.+++..|.+|+++++|++|++++|.+.......|+++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            4566666666666543 334455666666666666666655555566666666666666655544444455555555555


Q ss_pred             ccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 003200          186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLN  265 (840)
Q Consensus       186 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  265 (840)
                      +++|++                          .++++      ..++++++|++|++++|.+++..|..++++++|++|+
T Consensus       104 L~~n~l--------------------------~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A          104 LMSNSI--------------------------QKIKN------NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL  151 (680)
T ss_dssp             CCSSCC--------------------------CCCCS------CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred             CCCCcc--------------------------CccCh------hHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence            555544                          44333      4566666777777777766666666666677777777


Q ss_pred             cccCccccccchhhh--cCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEE
Q 003200          266 LRNNSLQGTISDAIG--NLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLD  343 (840)
Q Consensus       266 L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~  343 (840)
                      +++|.+++..+..+.  .+++|++|++++ +.+.+..|..+..+++|+.+++.++.+.......+....  ..++|+.|+
T Consensus       152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l--~~~~L~~L~  228 (680)
T 1ziw_A          152 LSNNKIQALKSEELDIFANSSLKKLELSS-NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS  228 (680)
T ss_dssp             CCSSCCCCBCHHHHGGGTTCEESEEECTT-CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH--TTSCCCEEE
T ss_pred             ccCCcccccCHHHhhccccccccEEECCC-CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh--hhccccEEE
Confidence            777766665555543  346677777776 466666666677777777777777766543333222111  113788888


Q ss_pred             ccCCcccccCccccCCCCC--CCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcc
Q 003200          344 MRSSSIYGHLTDQLGQFRN--LVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ  421 (840)
Q Consensus       344 l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  421 (840)
                      +++|.+.+..|.++..++.  |++|++++|.+.+..|..|+.+++|++|++++|.+.+..+. .|.++++|+++++++|.
T Consensus       229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~  307 (680)
T 1ziw_A          229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSF  307 (680)
T ss_dssp             CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCB
T ss_pred             ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchh
Confidence            8888888777777776644  88888888888877777788888888888888887754443 67778888888877654


Q ss_pred             cceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCccccccccc
Q 003200          422 LTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN  501 (840)
Q Consensus       422 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  501 (840)
                      .......               ..+.......+..+++|++|++++|++++..+..| ..+++|++|++++|.+......
T Consensus       308 ~~~~~~~---------------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~  371 (680)
T 1ziw_A          308 TKQSISL---------------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLT  371 (680)
T ss_dssp             CCC---------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT-TTCTTCCEEECTTCBSCCCEEC
T ss_pred             hhccccc---------------ccccccChhhcccCCCCCEEECCCCccCCCChhHh-ccccCCcEEECCCCchhhhhcc
Confidence            3321100               00000111245566777777777777776655443 4455666666665544311000


Q ss_pred             ccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCc
Q 003200          502 LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNL  581 (840)
Q Consensus       502 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  581 (840)
                      .                                          ..+.  -...++|+.|++++|++++..|.+|..+++|
T Consensus       372 ~------------------------------------------~~f~--~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  407 (680)
T 1ziw_A          372 N------------------------------------------ETFV--SLAHSPLHILNLTKNKISKIESDAFSWLGHL  407 (680)
T ss_dssp             T------------------------------------------TTTG--GGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             h------------------------------------------hhhc--ccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence            0                                          0000  0012467777777777776667777777777


Q ss_pred             CEEEccCCcCCCCCC-cccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCccc--ccCChhhhhccCCccEEE
Q 003200          582 KVLKLSNNKFSGNLP-NSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFV--GNIPTWFGERFSRMLVLI  658 (840)
Q Consensus       582 ~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~--~~~p~~~~~~l~~L~~L~  658 (840)
                      ++|++++|++++.+| ..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+.  +.+|..+. .+++|++|+
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~  486 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILD  486 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEE
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEE
Confidence            777777777766544 56677777777777777777666777777777777777777765  45666665 677777777


Q ss_pred             ccCCcccccCCccccCccccceeecccccccccCCcc--------ccccccCcccccccCcccccccCCcceEEeCCCCc
Q 003200          659 LRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKC--------ISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN  730 (840)
Q Consensus       659 l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--------~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~  730 (840)
                      +++|++++..|..+..+++|+.|++++|++++..+..        +.++                   ++|+.|+|++|+
T Consensus       487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l-------------------~~L~~L~L~~N~  547 (680)
T 1ziw_A          487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL-------------------SHLHILNLESNG  547 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC-------------------TTCCEEECCSSC
T ss_pred             CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC-------------------CCCCEEECCCCC
Confidence            7777777777777777888888888888777432221        3333                   344888888888


Q ss_pred             ccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcccc-CCCCCCeEeccCCcccccCCC
Q 003200          731 FSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS-SLTFLNHLNLSNNNLTGKIPL  809 (840)
Q Consensus       731 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~  809 (840)
                      ++...+..|.++++|+.|+|++|++++..+..|..+++|++|++++|++++..|..+. .+++|++|++++|++...-+.
T Consensus       548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            8844444578888888888888888866666778888888888888888877666666 678888888888888776553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.8e-58  Score=544.81  Aligned_cols=583  Identities=21%  Similarity=0.200  Sum_probs=392.1

Q ss_pred             CCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCC
Q 003200           74 TGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGN  153 (840)
Q Consensus        74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~  153 (840)
                      ..++++|+++++       .+.+..+..|.++++|++|+|++|.+.+. .|..++++++|++|++++|.+++..+.+|++
T Consensus        24 ~~~l~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           24 PTNITVLNLTHN-------QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             CTTCSEEECCSS-------CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCcEEECCCC-------CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence            357999999997       66666667899999999999999999975 6888999999999999999999766668999


Q ss_pred             CCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccC
Q 003200          154 LSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQN  233 (840)
Q Consensus       154 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~  233 (840)
                      +++|++|++++|.+....+..|.++++|++|++++|.+++...                                ..+..
T Consensus        96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------------~~~~~  143 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL--------------------------------GTQVQ  143 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC--------------------------------CSSSC
T ss_pred             CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc--------------------------------hhhcc
Confidence            9999999999999988888888989999998888888766421                                33444


Q ss_pred             CCCCCEEECcCCCCCCCCccccc--CCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccc---cCCC
Q 003200          234 LTSLKHLDLDSNHFNSSIPDWLY--KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSM---ANFC  308 (840)
Q Consensus       234 l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l---~~l~  308 (840)
                      +++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+..+++|+.|++.+ +.+.+.....+   ...+
T Consensus       144 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~l~~~  222 (680)
T 1ziw_A          144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN-VQLGPSLTEKLCLELANT  222 (680)
T ss_dssp             CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT-CCCHHHHHHHHHHHHTTS
T ss_pred             cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc-cccChhhHHHHHHHhhhc
Confidence            55555555555555544444332  334555555555555555555555555555555554 22222111111   1235


Q ss_pred             CCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCC
Q 003200          309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLR  388 (840)
Q Consensus       309 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  388 (840)
                      +|+.|++++|.+.+..+..+..+.   .++|++|++++|++.+..+..++.+++|++|++++|.+.+..|..|.++++|+
T Consensus       223 ~L~~L~L~~n~l~~~~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (680)
T 1ziw_A          223 SIRNLSLSNSQLSTTSNTTFLGLK---WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR  299 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTGGGG---GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred             cccEEEccCCcccccChhHhhccC---cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence            677777777777666666555443   12588888888888888888889999999999999999988888899999999


Q ss_pred             EEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCC
Q 003200          389 ELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNS  468 (840)
Q Consensus       389 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n  468 (840)
                      +|++++|...+.++..   .++             ......+..+++|+.|++++|.+.+..+.++..+++|++|++++|
T Consensus       300 ~L~L~~~~~~~~~~~~---~lp-------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          300 YLNLKRSFTKQSISLA---SLP-------------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             EEECTTCBCCC---------CC-------------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred             EEeccchhhhcccccc---ccc-------------ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence            9999887655432210   011             111123334455555555555555566677777888888888887


Q ss_pred             CCCCC--cchHHHh-ccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCc
Q 003200          469 RISDI--FPIRFLK-SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISH  545 (840)
Q Consensus       469 ~i~~~--~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~  545 (840)
                      .+...  ....|.. ..++|+.|++++|++.                                            +..+.
T Consensus       364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~--------------------------------------------~~~~~  399 (680)
T 1ziw_A          364 FTSLRTLTNETFVSLAHSPLHILNLTKNKIS--------------------------------------------KIESD  399 (680)
T ss_dssp             BSCCCEECTTTTGGGTTSCCCEEECTTSCCC--------------------------------------------EECTT
T ss_pred             chhhhhcchhhhcccccCcCceEECCCCCCC--------------------------------------------eEChh
Confidence            65432  1111110 0123344444333333                                            22221


Q ss_pred             hhhhccCCCCcccEEeccCCcCccccC-ccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCc--CCCCcc
Q 003200          546 FLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLS--GKIPIS  622 (840)
Q Consensus       546 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~  622 (840)
                      .    +..+++|++|++++|.+++.+| ..|.++++|++|++++|++++..+..|..+++|++|++++|.+.  +..|..
T Consensus       400 ~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~  475 (680)
T 1ziw_A          400 A----FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP  475 (680)
T ss_dssp             T----TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred             h----hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence            1    2234556666666666554443 45556666666666666666555556666666666666666554  345556


Q ss_pred             cccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccC--------CccccCccccceeecccccccccCCc
Q 003200          623 LKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPL--------PKTICDLAFLQILDLADNNLSGAIPK  694 (840)
Q Consensus       623 l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~  694 (840)
                      +.++++|++|++++|++++..|..+. .+++|++|++++|++++..        +..+.++++|+.|++++|+++...+.
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~  554 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE  554 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccCCCCCEEECCCCCCCcCChhhhc-cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH
Confidence            66666666666666666644443343 5666666666666665432        23478889999999999999843344


Q ss_pred             cccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchh-ccCCCCeEe
Q 003200          695 CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG-TMRALESVD  773 (840)
Q Consensus       695 ~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~  773 (840)
                      .+.++++|                   +.|++++|++++..+..|.++++|+.|++++|++++..|..++ .+++|+.|+
T Consensus       555 ~~~~l~~L-------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~  615 (680)
T 1ziw_A          555 VFKDLFEL-------------------KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD  615 (680)
T ss_dssp             TTTTCTTC-------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE
T ss_pred             HcccccCc-------------------ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE
Confidence            67777777                   8999999999977777788999999999999999988888887 799999999


Q ss_pred             CCCCcccccCC
Q 003200          774 FSVNQLSGEIP  784 (840)
Q Consensus       774 Ls~N~l~~~~p  784 (840)
                      +++|++...-+
T Consensus       616 l~~N~~~c~c~  626 (680)
T 1ziw_A          616 MRFNPFDCTCE  626 (680)
T ss_dssp             CTTCCCCBCCC
T ss_pred             ccCCCcccCCc
Confidence            99999987544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.9e-55  Score=506.83  Aligned_cols=530  Identities=19%  Similarity=0.228  Sum_probs=311.2

Q ss_pred             ccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccc
Q 003200           96 GKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWL  175 (840)
Q Consensus        96 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~  175 (840)
                      ..+|..+..  ++++|||++|.++++ .|..++.+++|++|+|++|++.+..|.+|+++++|++|++++|.+....+..|
T Consensus        25 ~~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  101 (606)
T 3t6q_A           25 NEIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL  101 (606)
T ss_dssp             SSCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred             ccCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence            355555543  688999999988864 57788888999999999998888888888999999999999988887777788


Q ss_pred             cCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccc
Q 003200          176 SGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWL  255 (840)
Q Consensus       176 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l  255 (840)
                      +++++|++|++++|+++....  ..++.+++|++|++++|.+.+.+.      ..+..+++|++|++++|.+.+..|..+
T Consensus       102 ~~l~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~  173 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKL------PKGFPTEKLKVLDFQNNAIHYLSKEDM  173 (606)
T ss_dssp             SSCTTCCEEECTTSCCSCGGG--SCCTTCTTCCEEECCSSCCCCCCC------CTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred             cccccccEeeccccCcccCCc--chhccCCcccEEECCCCcccccCc------ccccCCcccCEEEcccCcccccChhhh
Confidence            888888888888888776532  234556666666666666655432      222335566666666666555555555


Q ss_pred             cCCCCCc--EEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhcc
Q 003200          256 YKFSPLE--CLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSG  333 (840)
Q Consensus       256 ~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  333 (840)
                      +.+++|+  +|++++|.+++..|..+.. .+|+.|++++                         |.   ..+..+..+..
T Consensus       174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~-------------------------~~---~~~~~~~~l~~  224 (606)
T 3t6q_A          174 SSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGG-------------------------TQ---NLLVIFKGLKN  224 (606)
T ss_dssp             HTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTT-------------------------CS---CHHHHHHHTTT
T ss_pred             hhhcccceeEEecCCCccCccChhHhhh-ccccccccCC-------------------------ch---hHHHHhhhccc
Confidence            5555555  5555555555444433322 3455555544                         43   22222222220


Q ss_pred             CCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCC--CCCEEEccCCccccccChhhhccCCC
Q 003200          334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS--TLRELQIYDNKLNGTLSEFHFANLTK  411 (840)
Q Consensus       334 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~i~~~~~~~l~~  411 (840)
                         ..++.+.+..             +..+....+.        +..+.++.  +|+.|++++|.+. .++...|.++++
T Consensus       225 ---~~l~~l~~~~-------------~~~~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~  279 (606)
T 3t6q_A          225 ---STIQSLWLGT-------------FEDMDDEDIS--------PAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSG  279 (606)
T ss_dssp             ---CEEEEEECCC-------------CTTSCCCCCC--------GGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTT
T ss_pred             ---cchhheechh-------------hccccccccC--------hhHhchhhcCceeEEEeecCccC-ccCHHHhccccC
Confidence               0111121111             0111111111        11111111  3444444444443 222223444444


Q ss_pred             CCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEcc
Q 003200          412 LSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVG  491 (840)
Q Consensus       412 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~  491 (840)
                      |++|++++|.++                         .+|.++..+++|++|++++|++++..+..+ .           
T Consensus       280 L~~L~l~~n~l~-------------------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~-~-----------  322 (606)
T 3t6q_A          280 LQELDLTATHLS-------------------------ELPSGLVGLSTLKKLVLSANKFENLCQISA-S-----------  322 (606)
T ss_dssp             CSEEECTTSCCS-------------------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCG-G-----------
T ss_pred             CCEEeccCCccC-------------------------CCChhhcccccCCEEECccCCcCcCchhhh-h-----------
Confidence            444444433332                         223334445555555555555554433222 1           


Q ss_pred             CcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCcccc
Q 003200          492 LNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEI  571 (840)
Q Consensus       492 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  571 (840)
                                                                                   .+++|++|++++|.+.+.+
T Consensus       323 -------------------------------------------------------------~l~~L~~L~l~~n~~~~~~  341 (606)
T 3t6q_A          323 -------------------------------------------------------------NFPSLTHLSIKGNTKRLEL  341 (606)
T ss_dssp             -------------------------------------------------------------GCTTCSEEECCSCSSCCBC
T ss_pred             -------------------------------------------------------------ccCcCCEEECCCCCccccc
Confidence                                                                         1234444444444444333


Q ss_pred             Cc-cccCCCCcCEEEccCCcCCCCC--CcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhh
Q 003200          572 PD-CWMSYQNLKVLKLSNNKFSGNL--PNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFG  648 (840)
Q Consensus       572 ~~-~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~  648 (840)
                      |. .+..+++|++|++++|++++..  +..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..|....
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  421 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF  421 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred             chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence            22 2445555555555555555433  44555556666666666666555555666666666666666666655544423


Q ss_pred             hccCCccEEEccCCcccccCCccccCccccceeecccccccccC---CccccccccCcccccccCcccccccCCcceEEe
Q 003200          649 ERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAI---PKCISNLTGMVTVKSFTGSVVYREILPLVSLLD  725 (840)
Q Consensus       649 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~  725 (840)
                      ..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..   +..+..+++|                   +.|+
T Consensus       422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-------------------~~L~  482 (606)
T 3t6q_A          422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL-------------------EILV  482 (606)
T ss_dssp             TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC-------------------CEEE
T ss_pred             hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc-------------------cEEE
Confidence            35666666666666666666666667777777777777776521   2344554444                   7777


Q ss_pred             CCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200          726 ISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       726 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  805 (840)
                      +++|++++..|..++++++|+.|++++|++++.+|+.+.++++| +|++++|++++.+|..+..+++|++|++++|++++
T Consensus       483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            77777777777777778888888888888887777778888888 88888888887777777777788888888888777


Q ss_pred             cCC
Q 003200          806 KIP  808 (840)
Q Consensus       806 ~ip  808 (840)
                      ..+
T Consensus       562 ~c~  564 (606)
T 3t6q_A          562 TCS  564 (606)
T ss_dssp             SGG
T ss_pred             cCC
Confidence            555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.9e-53  Score=495.15  Aligned_cols=529  Identities=18%  Similarity=0.223  Sum_probs=363.6

Q ss_pred             CCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCC
Q 003200           75 GHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNL  154 (840)
Q Consensus        75 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l  154 (840)
                      ..+++|+++++       .+.+..+.+|.++++|++|+|++|.+.++ .|..++.+++|++|++++|++++..|..|+++
T Consensus        33 ~~l~~L~Ls~n-------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  104 (606)
T 3t6q_A           33 NSTECLEFSFN-------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGP  104 (606)
T ss_dssp             TTCCEEECTTC-------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred             CcCcEEEccCC-------ccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccc
Confidence            47899999997       67777788999999999999999999875 68889999999999999999999999999999


Q ss_pred             CCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCC
Q 003200          155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNL  234 (840)
Q Consensus       155 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l  234 (840)
                      ++|++|++++|.+....+..|.++++|++|++++|++.+.+.  ..+..+++|++|++++|.+++.++      ..++.+
T Consensus       105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l  176 (606)
T 3t6q_A          105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL--PKGFPTEKLKVLDFQNNAIHYLSK------EDMSSL  176 (606)
T ss_dssp             TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC--CTTCCCTTCCEEECCSSCCCEECH------HHHHTT
T ss_pred             ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc--ccccCCcccCEEEcccCcccccCh------hhhhhh
Confidence            999999999999998888889999999999999999987632  123348999999999999998765      778999


Q ss_pred             CCCC--EEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcE
Q 003200          235 TSLK--HLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKS  312 (840)
Q Consensus       235 ~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~  312 (840)
                      ++|+  +|++++|.+.+..|..+.. ..|++|++++|.   .++..+..+.+++...+... .+.           .+..
T Consensus       177 ~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~-~~~-----------~~~~  240 (606)
T 3t6q_A          177 QQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLG-TFE-----------DMDD  240 (606)
T ss_dssp             TTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECC-CCT-----------TSCC
T ss_pred             cccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheech-hhc-----------cccc
Confidence            9999  9999999999877776654 689999999986   45566666766655554431 111           1111


Q ss_pred             EEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEc
Q 003200          313 VNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQI  392 (840)
Q Consensus       313 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  392 (840)
                      ..+..        ..+..+.   ..+++.|++++|.+++..+..++.+++|++|++++|.++ .+|..+.++++|++|++
T Consensus       241 ~~i~~--------~~~~~l~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l  308 (606)
T 3t6q_A          241 EDISP--------AVFEGLC---EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL  308 (606)
T ss_dssp             CCCCG--------GGGGGGG---GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEEC
T ss_pred             cccCh--------hHhchhh---cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEEC
Confidence            11111        1111111   115667777777777766666777777777777777776 45666777777777777


Q ss_pred             cCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCC
Q 003200          393 YDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD  472 (840)
Q Consensus       393 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~  472 (840)
                      ++|.+.+..+ ..+.++++|++|++++|.+....                       .+..+..+++|++|++++|++++
T Consensus       309 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~  364 (606)
T 3t6q_A          309 SANKFENLCQ-ISASNFPSLTHLSIKGNTKRLEL-----------------------GTGCLENLENLRELDLSHDDIET  364 (606)
T ss_dssp             TTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBC-----------------------CSSTTTTCTTCCEEECCSSCCCE
T ss_pred             ccCCcCcCch-hhhhccCcCCEEECCCCCccccc-----------------------chhhhhccCcCCEEECCCCcccc
Confidence            7777663322 24444444444444444332110                       01112222222222222222211


Q ss_pred             CcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccC
Q 003200          473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVN  552 (840)
Q Consensus       473 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  552 (840)
                      ...                                                                       ....+.
T Consensus       365 ~~~-----------------------------------------------------------------------~~~~~~  373 (606)
T 3t6q_A          365 SDC-----------------------------------------------------------------------CNLQLR  373 (606)
T ss_dssp             EEE-----------------------------------------------------------------------STTTTT
T ss_pred             ccC-----------------------------------------------------------------------cchhcc
Confidence            100                                                                       000122


Q ss_pred             CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCc-ccCCCCcccEEEccCCcCcCCCCcccccCCCCcE
Q 003200          553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPN-SLGSITSLVWLYLRKNRLSGKIPISLKNCTALAS  631 (840)
Q Consensus       553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  631 (840)
                      .+++|++|++++|.+++..|..+..+++|++|++++|++++..+. .+..+++|++|++++|.+++..|..+..+++|++
T Consensus       374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  453 (606)
T 3t6q_A          374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH  453 (606)
T ss_dssp             TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred             cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence            345566666666666555555555556666666666655544332 2555555555555555555555555555555555


Q ss_pred             EeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCc
Q 003200          632 LDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGS  711 (840)
Q Consensus       632 L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~  711 (840)
                      |++++|++.+...                      ..+..+..+++|+.|++++|++++..|..+.++++|         
T Consensus       454 L~L~~n~l~~~~~----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------  502 (606)
T 3t6q_A          454 LNLQGNHFPKGNI----------------------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM---------  502 (606)
T ss_dssp             EECTTCBCGGGEE----------------------CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC---------
T ss_pred             EECCCCCCCcccc----------------------ccchhhccCCCccEEECCCCccCccChhhhccccCC---------
Confidence            5555555442100                      123456777888888888888887777788777766         


Q ss_pred             ccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC
Q 003200          712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP  784 (840)
Q Consensus       712 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  784 (840)
                                +.|++++|++++.+|..+.+++.| .|++++|++++.+|..++.+++|++|++++|++.+..+
T Consensus       503 ----------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          503 ----------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             ----------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ----------CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence                      888999999988888899999999 99999999998888889999999999999999987554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.8e-54  Score=500.84  Aligned_cols=509  Identities=18%  Similarity=0.232  Sum_probs=295.2

Q ss_pred             CcHHHHHHHHHhhhcCCCCCC--------CCCCCCCCCCCccc---cceecCCCCCCEEEEEcCCCCCCCCCcccccccc
Q 003200           31 CLETERRALLRFKQDLQDPSN--------RLASWTGDGDCCTW---AGVACGNVTGHILELNLRNPSTSNPRSMLVGKVN   99 (840)
Q Consensus        31 ~~~~~~~~ll~~k~~~~~~~~--------~l~~W~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~   99 (840)
                      ....|+.||.+||+++.++..        ..++|..+.+||.|   +||+|+. .|||++|+|+++       .+.|.+|
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~-------~l~g~lp   98 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGF-------GASGRVP   98 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTS-------CCEEEEC
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCc-------ccCCcCC
Confidence            345799999999999875421        24589988999999   9999985 489999999997       8899999


Q ss_pred             ccccCCCCCCEEeCCCCCCC------C-----CCccccccCCCCCcEEeccCCcccCCCCCCCCCC-CCCCeEeccCccc
Q 003200          100 PALLDLKHLSYLDLSSNDFQ------G-----VQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNL-SDLQFLDLSSNYL  167 (840)
Q Consensus       100 ~~~~~l~~L~~L~Ls~n~~~------~-----~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l-~~L~~L~Ls~n~~  167 (840)
                      ++++++++|++|||++|.+.      +     ..+|...  +.+|+ ++++++.+.+.+|..+..+ ..+..+++....+
T Consensus        99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~  175 (636)
T 4eco_A           99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI  175 (636)
T ss_dssp             GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred             hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence            99999999999999999752      1     0233333  45666 7777777777666555421 1222222221111


Q ss_pred             cCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEEC--cCC
Q 003200          168 YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDL--DSN  245 (840)
Q Consensus       168 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~L--s~n  245 (840)
                      .                        .                                      .....++.+.+  ..|
T Consensus       176 ~------------------------~--------------------------------------~~~~~l~~l~l~~~~n  193 (636)
T 4eco_A          176 K------------------------K--------------------------------------SSRITLKDTQIGQLSN  193 (636)
T ss_dssp             C------------------------C--------------------------------------CCCCCCCTTTTTCCSC
T ss_pred             c------------------------c--------------------------------------ccccchhhhhhccccC
Confidence            0                        0                                      00001111111  234


Q ss_pred             CCCCCCcccccCCCCCcEEEcccCccccc-----------------cchhhh--cCCCCcEEecccccCccccCcccccC
Q 003200          246 HFNSSIPDWLYKFSPLECLNLRNNSLQGT-----------------ISDAIG--NLTSVSWLDLSINIGLQGRIPRSMAN  306 (840)
Q Consensus       246 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~l~~  306 (840)
                      ++++ +|..++++++|++|++++|.+++.                 +|..++  ++++|++|++++ +.+.+.+|..+++
T Consensus       194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~-n~l~~~~p~~l~~  271 (636)
T 4eco_A          194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN-CPNLTKLPTFLKA  271 (636)
T ss_dssp             EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC-CTTCSSCCTTTTT
T ss_pred             CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC-CcCCccChHHHhc
Confidence            5555 555566666666666666666553                 666666  777777777777 5666777777777


Q ss_pred             CCCCcEEEcCCCc-ccc-cchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccc--ccc
Q 003200          307 FCNLKSVNLRGVH-LSQ-EISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPE--SFG  382 (840)
Q Consensus       307 l~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~  382 (840)
                      +++|++|++++|+ +++ .+|..+..+.                       .+..+++|++|++++|+++ .+|.  .++
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-----------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~  327 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALA-----------------------DAPVGEKIQIIYIGYNNLK-TFPVETSLQ  327 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------------HSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhh-----------------------ccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence            7777777777777 777 7777766541                       0112244555555555554 3444  455


Q ss_pred             CCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcE
Q 003200          383 QLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQY  462 (840)
Q Consensus       383 ~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  462 (840)
                      ++++|++|++++|.+.|.+|  .+..+++|++|++++|.++                         .+|.++..+     
T Consensus       328 ~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-------------------------~lp~~l~~l-----  375 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-------------------------EIPANFCGF-----  375 (636)
T ss_dssp             TCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-------------------------ECCTTSEEE-----
T ss_pred             cCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-------------------------cccHhhhhh-----
Confidence            55555555555555554444  2333333333333333222                         011111111     


Q ss_pred             EEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCccc
Q 003200          463 LNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGS  542 (840)
Q Consensus       463 L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~  542 (840)
                                                                                                      
T Consensus       376 --------------------------------------------------------------------------------  375 (636)
T 4eco_A          376 --------------------------------------------------------------------------------  375 (636)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhhhccCCCCc-ccEEeccCCcCccccCccccCCC--CcCEEEccCCcCCCCCCcccC-------CCCcccEEEccC
Q 003200          543 ISHFLCYRVNETKS-LEGLKLTDNYLQGEIPDCWMSYQ--NLKVLKLSNNKFSGNLPNSLG-------SITSLVWLYLRK  612 (840)
Q Consensus       543 ~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~-------~l~~L~~L~L~~  612 (840)
                                  ++ |++|++++|.++ .+|..+...+  +|++|++++|++++..|..+.       .+++|++|++++
T Consensus       376 ------------~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~  442 (636)
T 4eco_A          376 ------------TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN  442 (636)
T ss_dssp             ------------CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred             ------------cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence                        22 333333333333 2333333222  444444444544444444444       445566666666


Q ss_pred             CcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccC
Q 003200          613 NRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAI  692 (840)
Q Consensus       613 n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  692 (840)
                      |++++..+..+..+++|++|++++|+++ .+|...+....                 ..+.++++|+.|++++|+++ .+
T Consensus       443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~l  503 (636)
T 4eco_A          443 NQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-KL  503 (636)
T ss_dssp             SCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-BC
T ss_pred             CccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------------ccccccCCccEEECcCCcCC-cc
Confidence            6665322223444566666666666665 45544332111                 01122335555555555555 44


Q ss_pred             Ccccc--ccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeC------CCCcccccCCcchh
Q 003200          693 PKCIS--NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINF------SFNTFTGRIPESIG  764 (840)
Q Consensus       693 p~~~~--~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~p~~l~  764 (840)
                      |..+.  .+++|                   +.|+|++|++++ +|..+.++++|+.|+|      ++|++.+.+|..++
T Consensus       504 p~~~~~~~l~~L-------------------~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~  563 (636)
T 4eco_A          504 SDDFRATTLPYL-------------------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT  563 (636)
T ss_dssp             CGGGSTTTCTTC-------------------CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred             ChhhhhccCCCc-------------------CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence            54443  44333                   555666665554 5555555666666666      56778888888888


Q ss_pred             ccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200          765 TMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       765 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  805 (840)
                      ++++|++|+|++|++ +.+|..+.  ++|++|++++|++.-
T Consensus       564 ~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          564 LCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             GCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             cCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            888888888888888 57887766  788888888887653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-52  Score=487.41  Aligned_cols=520  Identities=21%  Similarity=0.247  Sum_probs=288.7

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEE
Q 003200          106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLD  185 (840)
Q Consensus       106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  185 (840)
                      +++++|+|++|.++++ .+..+.++++|++|++++|++++..|.+|+++++|++|++++|.+....+..|+++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            5666666666666643 344566666666666666666666666666666666666666666655555566565555555


Q ss_pred             ccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCC-CCcccccCCCCCcEE
Q 003200          186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS-SIPDWLYKFSPLECL  264 (840)
Q Consensus       186 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L  264 (840)
                      +++|.+.+.                          ++      ..++++++|++|++++|.+.+ .+|..++++++|++|
T Consensus       111 L~~n~l~~~--------------------------~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A          111 AVETKLASL--------------------------ES------FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             CTTSCCCCS--------------------------SS------SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred             ccCCccccc--------------------------cc------cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence            555555443                          32      446666666666666666654 456666666666666


Q ss_pred             EcccCccccccchhhhcCCCCc----EEecccccCccccCcccccCCCCCcEEEcCCCccc-ccchHHHHhhccCCCCCC
Q 003200          265 NLRNNSLQGTISDAIGNLTSVS----WLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLS-QEISEILDIFSGCVSNGL  339 (840)
Q Consensus       265 ~L~~n~l~~~~~~~l~~l~~L~----~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~L  339 (840)
                      ++++|.+++..+..++.+++|+    +|++++ +.+.+..+..+... +|+.|++++|.+. +..+..+..+.     .+
T Consensus       159 ~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~-n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~-----~L  231 (606)
T 3vq2_A          159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLA-----GL  231 (606)
T ss_dssp             ECCSSCCCEECTTTTHHHHHCTTCCCEEECTT-CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTT-----TC
T ss_pred             EccCCcceecChhhhhhhhccccccceeeccC-CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccc-----cc
Confidence            6666666665555555555443    566666 44444333333333 6666666666655 33444444444     44


Q ss_pred             CEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEc-cCCccccccChhhhccCCCCCEEEcc
Q 003200          340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQI-YDNKLNGTLSEFHFANLTKLSWFRVG  418 (840)
Q Consensus       340 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~i~~~~~~~l~~L~~L~L~  418 (840)
                      +.+++..+.+.+.        ..+..       +....+..+..+ .++.+++ ..+.+.+.++.  +..+++|+.++++
T Consensus       232 ~~l~l~~~~~~~~--------~~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~  293 (606)
T 3vq2_A          232 HVHRLILGEFKDE--------RNLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLA  293 (606)
T ss_dssp             EEEEEEEECCTTS--------CCCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEE
T ss_pred             ccccccccccccC--------Ccccc-------cChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEec
Confidence            4444433222110        00000       011111122222 3445555 44445444433  4455555555554


Q ss_pred             CcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccc
Q 003200          419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGK  498 (840)
Q Consensus       419 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~  498 (840)
                      +|.+..                         ++ ++..+++|++|++++|++.. +|. +  .+                
T Consensus       294 ~~~~~~-------------------------l~-~l~~~~~L~~L~l~~n~l~~-lp~-~--~l----------------  327 (606)
T 3vq2_A          294 GVSIKY-------------------------LE-DVPKHFKWQSLSIIRCQLKQ-FPT-L--DL----------------  327 (606)
T ss_dssp             SCCCCC-------------------------CC-CCCTTCCCSEEEEESCCCSS-CCC-C--CC----------------
T ss_pred             Cccchh-------------------------hh-hccccccCCEEEcccccCcc-ccc-C--CC----------------
Confidence            444321                         11 23334444444444444421 111 0  22                


Q ss_pred             cccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCC
Q 003200          499 ISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSY  578 (840)
Q Consensus       499 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  578 (840)
                                                                              ++|++|++++|...+..  .+..+
T Consensus       328 --------------------------------------------------------~~L~~L~l~~n~~~~~~--~~~~l  349 (606)
T 3vq2_A          328 --------------------------------------------------------PFLKSLTLTMNKGSISF--KKVAL  349 (606)
T ss_dssp             --------------------------------------------------------SSCCEEEEESCSSCEEC--CCCCC
T ss_pred             --------------------------------------------------------CccceeeccCCcCccch--hhccC
Confidence                                                                    22333333333222111  22333


Q ss_pred             CCcCEEEccCCcCCCC--CCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCC-hhhhhccCCcc
Q 003200          579 QNLKVLKLSNNKFSGN--LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIP-TWFGERFSRML  655 (840)
Q Consensus       579 ~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p-~~~~~~l~~L~  655 (840)
                      ++|++|++++|++++.  .|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+. .+++|+
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~  427 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLL  427 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT-TCTTCC
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh-ccccCC
Confidence            4444444444444332  13344444444444444444442 33444555555555555555554444 2232 455666


Q ss_pred             EEEccCCcccccCCccccCccccceeecccccccc-cCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc
Q 003200          656 VLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG-AIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE  734 (840)
Q Consensus       656 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  734 (840)
                      +|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|                   +.|++++|++++.
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------------------~~L~Ls~n~l~~~  488 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-------------------TFLDLSKCQLEQI  488 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------------CEEECTTSCCCEE
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC-------------------CEEECCCCcCCcc
Confidence            66666666666666666667777777777777776 356667666666                   7778888887777


Q ss_pred             CcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCC-CCCeEeccCCcccccCCC
Q 003200          735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT-FLNHLNLSNNNLTGKIPL  809 (840)
Q Consensus       735 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~  809 (840)
                      .|..+.++++|++|++++|++++.+|..|+++++|++||+++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            7777888888888888888888777888888888888888888887 6777777776 588888888888776553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.4e-52  Score=484.63  Aligned_cols=521  Identities=18%  Similarity=0.190  Sum_probs=354.0

Q ss_pred             CCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCC
Q 003200           74 TGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGN  153 (840)
Q Consensus        74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~  153 (840)
                      ..++++|+++++       .+.+..+..|.++++|++|+|++|.++++ .|..++.+++|++|+|++|.+++..|..|++
T Consensus        31 ~~~l~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           31 PSSTKNIDLSFN-------PLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             CTTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             CCCcCEEECCCC-------CcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence            357999999997       67776677999999999999999999965 5778999999999999999999888999999


Q ss_pred             CCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccC
Q 003200          154 LSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQN  233 (840)
Q Consensus       154 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~  233 (840)
                      +++|++|++++|.+....+..++++++|++|++++|.+.+.. .+..++++++|++|++++|.+++.++      ..++.
T Consensus       103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~  175 (606)
T 3vq2_A          103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITV------NDLQF  175 (606)
T ss_dssp             CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECT------TTTHH
T ss_pred             cccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecCh------hhhhh
Confidence            999999999999999888888999999999999999998642 34567788999999999998888765      55666


Q ss_pred             CCCCC----EEECcCCCCCCCCcccccCCCCCcEEEcccCccc-cccchhhhcCCCCcEEecccccCccccCcccccCCC
Q 003200          234 LTSLK----HLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ-GTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC  308 (840)
Q Consensus       234 l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~  308 (840)
                      +++|+    +|++++|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+ .+.+.        .
T Consensus       176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~--------~  245 (606)
T 3vq2_A          176 LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG-EFKDE--------R  245 (606)
T ss_dssp             HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE-CCTTS--------C
T ss_pred             hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccc-ccccC--------C
Confidence            65554    79999998886555555444 8899999988876 466777888888888887652 22110        0


Q ss_pred             CCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEc-cCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCC
Q 003200          309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM-RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTL  387 (840)
Q Consensus       309 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  387 (840)
                      .+..       +..   ..+..+.   ...++.+++ ..+.+.+.+|. +..+++|++|++++|.+... | .+..+++|
T Consensus       246 ~l~~-------~~~---~~~~~l~---~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L  309 (606)
T 3vq2_A          246 NLEI-------FEP---SIMEGLC---DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKW  309 (606)
T ss_dssp             CCSC-------CCG---GGGTTGG---GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCC
T ss_pred             cccc-------cCh---HHhhhhh---hccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h-hccccccC
Confidence            0100       000   0111110   003444444 44455555554 55556666666666665432 3 55555666


Q ss_pred             CEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccC
Q 003200          388 RELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLN  467 (840)
Q Consensus       388 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~  467 (840)
                      ++|++++|.+ +.+|.  + .+                                                ++|++|++++
T Consensus       310 ~~L~l~~n~l-~~lp~--~-~l------------------------------------------------~~L~~L~l~~  337 (606)
T 3vq2_A          310 QSLSIIRCQL-KQFPT--L-DL------------------------------------------------PFLKSLTLTM  337 (606)
T ss_dssp             SEEEEESCCC-SSCCC--C-CC------------------------------------------------SSCCEEEEES
T ss_pred             CEEEcccccC-ccccc--C-CC------------------------------------------------CccceeeccC
Confidence            6666666655 34442  2 34                                                4444444444


Q ss_pred             CCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchh
Q 003200          468 SRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFL  547 (840)
Q Consensus       468 n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  547 (840)
                      |+..+..+                                                                        
T Consensus       338 n~~~~~~~------------------------------------------------------------------------  345 (606)
T 3vq2_A          338 NKGSISFK------------------------------------------------------------------------  345 (606)
T ss_dssp             CSSCEECC------------------------------------------------------------------------
T ss_pred             CcCccchh------------------------------------------------------------------------
Confidence            42211100                                                                        


Q ss_pred             hhccCCCCcccEEeccCCcCccc--cCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCC-cccc
Q 003200          548 CYRVNETKSLEGLKLTDNYLQGE--IPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIP-ISLK  624 (840)
Q Consensus       548 ~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~  624 (840)
                         +..+++|++|++++|.+++.  +|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+.
T Consensus       346 ---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  421 (606)
T 3vq2_A          346 ---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL  421 (606)
T ss_dssp             ---CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred             ---hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence               00123344444444444332  24444455555555555555543 33445555555555555555555444 4555


Q ss_pred             cCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccc-cCCccccCccccceeecccccccccCCccccccccCc
Q 003200          625 NCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHG-PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMV  703 (840)
Q Consensus       625 ~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  703 (840)
                      ++++|++|++++|++.+..|..+. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++..|..+.++++| 
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-  499 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL-  499 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-
T ss_pred             ccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC-
Confidence            566666666666666655555554 56666666666666665 356777778888888888888887777778777766 


Q ss_pred             ccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccC-CCCeEeCCCCccccc
Q 003200          704 TVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMR-ALESVDFSVNQLSGE  782 (840)
Q Consensus       704 ~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~  782 (840)
                                        +.|++++|++++.+|..+.++++|++|++++|+++ .+|..+..++ +|++|++++|++.+.
T Consensus       500 ------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          500 ------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             ------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             ------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence                              88888888888888888888999999999999988 6777788886 599999999998865


Q ss_pred             CC
Q 003200          783 IP  784 (840)
Q Consensus       783 ~p  784 (840)
                      .+
T Consensus       561 c~  562 (606)
T 3vq2_A          561 CE  562 (606)
T ss_dssp             ST
T ss_pred             Cc
Confidence            44

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=8.5e-51  Score=488.11  Aligned_cols=524  Identities=21%  Similarity=0.217  Sum_probs=316.2

Q ss_pred             CCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCC-CCCCCCCCCCCeEeccCccccCCCcccccCCCCCCE
Q 003200          105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMI-PPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEH  183 (840)
Q Consensus       105 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~  183 (840)
                      .+++++|||++|.++++ .|..+..+++|++|+|++|...+.+ |.+|+++++|++|+|++|.+....+.+|.++++|++
T Consensus        23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            35666666666666643 4555666666666666666444333 556666666666666666666555556666666666


Q ss_pred             EEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCc-ccccCCCCCc
Q 003200          184 LDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIP-DWLYKFSPLE  262 (840)
Q Consensus       184 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~  262 (840)
                      |+|++|.+++.....                              ..+..+++|++|++++|.+.+..+ ..|+++++|+
T Consensus       102 L~Ls~n~l~~~~~~~------------------------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKD------------------------------GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             EECTTCCCSSCCSTT------------------------------CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred             eeCcCCCCCcccccC------------------------------ccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence            666555554421111                              235556666666666666655433 3556666666


Q ss_pred             EEEcccCccccccchhhhcC--CCCcEEecccccCccccCcccccCCCC------CcEEEcCCCcccccchHHHHhhccC
Q 003200          263 CLNLRNNSLQGTISDAIGNL--TSVSWLDLSINIGLQGRIPRSMANFCN------LKSVNLRGVHLSQEISEILDIFSGC  334 (840)
Q Consensus       263 ~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~~~~~  334 (840)
                      +|++++|.+++..+..+..+  ++|+.|+++. +.+.+..|..++.+++      |+.|++++|.+.+..+..+....  
T Consensus       152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l--  228 (844)
T 3j0a_A          152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA-NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI--  228 (844)
T ss_dssp             EEEEESSCCCCCCSGGGHHHHHCSSCCCEECC-SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS--
T ss_pred             EEECCCCcCCeeCHHHcccccCCccceEECCC-CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc--
Confidence            66666666665555555555  5666666666 4555555555544443      66666666666555544443221  


Q ss_pred             CCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCC--CCCCEEEccCCccccccChhhhccCCCC
Q 003200          335 VSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQL--STLRELQIYDNKLNGTLSEFHFANLTKL  412 (840)
Q Consensus       335 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~i~~~~~~~l~~L  412 (840)
                      ....++.+.+..+.....               +..+.+.+..+..|.++  ++|+.|++++|.+.+..+ ..|..+++|
T Consensus       229 ~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L  292 (844)
T 3j0a_A          229 SKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETLKDL  292 (844)
T ss_dssp             CSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS-CCSSSCCCC
T ss_pred             Ccccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccCh-hhhhcCCCC
Confidence            112455555553322110               11122222223333333  456666666666553322 245555555


Q ss_pred             CEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccC
Q 003200          413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGL  492 (840)
Q Consensus       413 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~  492 (840)
                      +.|++++|.+....                        +..+..+++|++|++++|++++..+..               
T Consensus       293 ~~L~L~~n~i~~~~------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------  333 (844)
T 3j0a_A          293 KVLNLAYNKINKIA------------------------DEAFYGLDNLQVLNLSYNLLGELYSSN---------------  333 (844)
T ss_dssp             CEEEEESCCCCEEC------------------------TTTTTTCSSCCEEEEESCCCSCCCSCS---------------
T ss_pred             CEEECCCCcCCCCC------------------------hHHhcCCCCCCEEECCCCCCCccCHHH---------------
Confidence            55555555544322                        222333344444444444433322211               


Q ss_pred             cccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccC
Q 003200          493 NQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP  572 (840)
Q Consensus       493 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  572 (840)
                                                                                +..+++|+.|++++|.+++..+
T Consensus       334 ----------------------------------------------------------~~~l~~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          334 ----------------------------------------------------------FYGLPKVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             ----------------------------------------------------------CSSCTTCCEEECCSCCCCCCCS
T ss_pred             ----------------------------------------------------------hcCCCCCCEEECCCCCCCccCh
Confidence                                                                      1224556666666666665555


Q ss_pred             ccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccC
Q 003200          573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFS  652 (840)
Q Consensus       573 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~  652 (840)
                      ..|..+++|++|++++|.+++.     ..+++|+.|++++|+++ .+|..   ..+++.|++++|++++.-...+...++
T Consensus       356 ~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~  426 (844)
T 3j0a_A          356 QTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVP  426 (844)
T ss_dssp             SCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred             hhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCC
Confidence            5666677777777777776632     22566777777777776 34432   356777778877777543333333678


Q ss_pred             CccEEEccCCcccccCCc-cccCccccceeecccccccc-----cCCccccccccCcccccccCcccccccCCcceEEeC
Q 003200          653 RMLVLILRSNQFHGPLPK-TICDLAFLQILDLADNNLSG-----AIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDI  726 (840)
Q Consensus       653 ~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~L  726 (840)
                      +|++|++++|++++..+. .+..+++|+.|++++|.+++     ..|..+.++++|                   +.|+|
T Consensus       427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L-------------------~~L~L  487 (844)
T 3j0a_A          427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL-------------------QVLYL  487 (844)
T ss_dssp             TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE-------------------ECCCC
T ss_pred             ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc-------------------cEEEC
Confidence            888888888888765443 34567888999999998873     333445555444                   88999


Q ss_pred             CCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccccc
Q 003200          727 SRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGK  806 (840)
Q Consensus       727 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  806 (840)
                      ++|++++.+|..+.++++|+.|+|++|++++..|..+.  ++|+.|||++|++++.+|+.+.   +|+.|++++|++...
T Consensus       488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICE  562 (844)
T ss_dssp             CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCS
T ss_pred             CCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccc
Confidence            99999988888899999999999999999977777665  8999999999999998887764   788999999999876


Q ss_pred             CC
Q 003200          807 IP  808 (840)
Q Consensus       807 ip  808 (840)
                      .+
T Consensus       563 c~  564 (844)
T 3j0a_A          563 CE  564 (844)
T ss_dssp             SS
T ss_pred             cc
Confidence            65

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-51  Score=482.56  Aligned_cols=309  Identities=20%  Similarity=0.254  Sum_probs=195.6

Q ss_pred             CCCcHHHHHHHHHhhhcCCCCCCCCCCCCCC-----CCC--ccc------------cceecCCCCCCEEEEEcCCCCCCC
Q 003200           29 VGCLETERRALLRFKQDLQDPSNRLASWTGD-----GDC--CTW------------AGVACGNVTGHILELNLRNPSTSN   89 (840)
Q Consensus        29 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~-----~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~~   89 (840)
                      +.+..+|+.||++||+++.+|     +|+.+     .+|  |.|            .||+|+. .+||++|+|+++    
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~----  333 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF----  333 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT----
T ss_pred             cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC----
Confidence            345678999999999999876     78733     355  999            9999986 689999999997    


Q ss_pred             CCccccccccccccCCCCCCEEeC-CCCCCCCCCccccccCC----C-----CCcE------Eec-cCCccc--------
Q 003200           90 PRSMLVGKVNPALLDLKHLSYLDL-SSNDFQGVQIPRFIGSM----R-----NLRY------LNL-SDTQFV--------  144 (840)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~L~~L~L-s~n~~~~~~~p~~l~~l----~-----~L~~------L~L-s~n~i~--------  144 (840)
                         .+.|.+|++++++++|++||| ++|.+.|. .|......    .     .++.      ++. ....+.        
T Consensus       334 ---~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~  409 (876)
T 4ecn_A          334 ---GAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN  409 (876)
T ss_dssp             ---CCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred             ---CCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence               899999999999999999999 88877653 22110000    0     0000      000 000000        


Q ss_pred             ---CCCCCCCCCCCCCCeEeccC--ccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCc
Q 003200          145 ---GMIPPQLGNLSDLQFLDLSS--NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH  219 (840)
Q Consensus       145 ---~~~p~~l~~l~~L~~L~Ls~--n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  219 (840)
                         ...+........++.+.+..  |.+.. .+..|.++++|++|+|++|++++... +..+        +..+.|.+.+
T Consensus       410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i-~~~~--------~~~s~n~~~g  479 (876)
T 4ecn_A          410 RNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI-AVDW--------EDANSDYAKQ  479 (876)
T ss_dssp             TCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGB-SSSC--------SCTTSHHHHH
T ss_pred             hCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcc-cccc--------cccccccccc
Confidence               00111112222333333333  44443 23345555555555555555443100 0000        0000000000


Q ss_pred             CCCCCCCCCCccc--CCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCc-ccc-ccchhhhcCC-------CCcEE
Q 003200          220 FPTLASPIPRGLQ--NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS-LQG-TISDAIGNLT-------SVSWL  288 (840)
Q Consensus       220 ~~~~~~~l~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L  288 (840)
                            .+|..++  ++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++       +|++|
T Consensus       480 ------~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L  553 (876)
T 4ecn_A          480 ------YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF  553 (876)
T ss_dssp             ------HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred             ------cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence                  1346666  88889999999988888888888888899999999887 887 7887776665       66666


Q ss_pred             ecccccCccccCcc--cccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEE
Q 003200          289 DLSINIGLQGRIPR--SMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTL  366 (840)
Q Consensus       289 ~L~~n~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  366 (840)
                      ++++ +.+. .+|.  .+++++                             +|+.|++++|+++ .+| .++.+++|++|
T Consensus       554 ~Ls~-N~L~-~ip~~~~l~~L~-----------------------------~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L  600 (876)
T 4ecn_A          554 YMGY-NNLE-EFPASASLQKMV-----------------------------KLGLLDCVHNKVR-HLE-AFGTNVKLTDL  600 (876)
T ss_dssp             ECCS-SCCC-BCCCHHHHTTCT-----------------------------TCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred             EeeC-CcCC-ccCChhhhhcCC-----------------------------CCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence            6665 3444 4444  444444                             5555555555555 456 67788889999


Q ss_pred             EccCCcccccccccccCCCC-CCEEEccCCccccccC
Q 003200          367 NLANNSIVGLIPESFGQLST-LRELQIYDNKLNGTLS  402 (840)
Q Consensus       367 ~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~i~  402 (840)
                      ++++|++. .+|..+.++++ |+.|++++|.+. .+|
T Consensus       601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             ECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence            99999888 67777888888 999999999886 444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-49  Score=473.02  Aligned_cols=530  Identities=18%  Similarity=0.206  Sum_probs=365.4

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccc-cCCCcccccCCCCCCEEEcc
Q 003200          109 SYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLR  187 (840)
Q Consensus       109 ~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~-~~~~~~~~~~l~~L~~L~Ls  187 (840)
                      +..|.++++++  .+|.   ..++|++|+|++|.+++..|.+|.++++|++|++++|.. ....+..|.++++|++|+|+
T Consensus         7 ~~~dcs~~~L~--~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSS--CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCC--CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            46777888888  4676   357899999999999888888888999899888888843 22223344444444444444


Q ss_pred             CcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCccc--ccCCCCCcEEE
Q 003200          188 SVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDW--LYKFSPLECLN  265 (840)
Q Consensus       188 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~  265 (840)
                      +|                          .+.+..+      ..|.++++|++|+|++|.+.+.+|..  +.++++|++|+
T Consensus        82 ~N--------------------------~l~~~~p------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~  129 (844)
T 3j0a_A           82 SS--------------------------KIYFLHP------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD  129 (844)
T ss_dssp             TC--------------------------CCCEECT------TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred             CC--------------------------cCcccCH------hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence            43                          3333322      66777777777777777777655544  67777777777


Q ss_pred             cccCccccccc-hhhhcCCCCcEEecccccCccccCcccccCC--CCCcEEEcCCCcccccchHHHHhhccCCCCCCCEE
Q 003200          266 LRNNSLQGTIS-DAIGNLTSVSWLDLSINIGLQGRIPRSMANF--CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESL  342 (840)
Q Consensus       266 L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  342 (840)
                      +++|.+++..+ ..++++++|++|++++ +.+.+..+..+..+  +                             +|+.|
T Consensus       130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~~-----------------------------~L~~L  179 (844)
T 3j0a_A          130 LSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGK-----------------------------TLSFF  179 (844)
T ss_dssp             EESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHHC-----------------------------SSCCC
T ss_pred             CCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccCC-----------------------------ccceE
Confidence            77777765433 4566666666666665 34444444443333  3                             55555


Q ss_pred             EccCCcccccCccccCCCCC------CCEEEccCCcccccccccccCC---CCCCEEEccCCccccccChhhhccCCCCC
Q 003200          343 DMRSSSIYGHLTDQLGQFRN------LVTLNLANNSIVGLIPESFGQL---STLRELQIYDNKLNGTLSEFHFANLTKLS  413 (840)
Q Consensus       343 ~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  413 (840)
                      +++.|.+.+..|..++.+++      |++|++++|.+.+..+..+...   .+++.+.+..+......            
T Consensus       180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~------------  247 (844)
T 3j0a_A          180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF------------  247 (844)
T ss_dssp             EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS------------
T ss_pred             ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc------------
Confidence            55555555555554444433      7777777776666555554432   44555555533321100            


Q ss_pred             EEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccC--CCCCcEEEccCCCCCCCcchHHHhccCCccEEEcc
Q 003200          414 WFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHS--QKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVG  491 (840)
Q Consensus       414 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~  491 (840)
                          ..+.+                        .......+..  .++|++|++++|.+.+..+..+ ..+++|+.|+++
T Consensus       248 ----~~~~l------------------------~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~  298 (844)
T 3j0a_A          248 ----GFHNI------------------------KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLA  298 (844)
T ss_dssp             ----SCSSS------------------------TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEE
T ss_pred             ----ccccc------------------------CCCChhhhhccccCCccEEECCCCcccccChhhh-hcCCCCCEEECC
Confidence                00111                        1111122222  2556666666666655443322 223333333333


Q ss_pred             CcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCcccc
Q 003200          492 LNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEI  571 (840)
Q Consensus       492 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  571 (840)
                      +|.+.                                            +..+.    .+..+++|++|++++|.+++..
T Consensus       299 ~n~i~--------------------------------------------~~~~~----~~~~l~~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          299 YNKIN--------------------------------------------KIADE----AFYGLDNLQVLNLSYNLLGELY  330 (844)
T ss_dssp             SCCCC--------------------------------------------EECTT----TTTTCSSCCEEEEESCCCSCCC
T ss_pred             CCcCC--------------------------------------------CCChH----HhcCCCCCCEEECCCCCCCccC
Confidence            33332                                            22222    1334688999999999999888


Q ss_pred             CccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhcc
Q 003200          572 PDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERF  651 (840)
Q Consensus       572 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l  651 (840)
                      |..|..+++|++|++++|++.+..+..|..+++|++|++++|.+++. +    .+++|+.|++++|+++ .+|..    .
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~----~  400 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI----N  400 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC----C
T ss_pred             HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc----c
Confidence            99999999999999999999988888899999999999999999843 2    3789999999999998 66653    5


Q ss_pred             CCccEEEccCCcccccCC-ccccCccccceeecccccccccCCc-cccccccCcccccccCcccccccCCcceEEeCCCC
Q 003200          652 SRMLVLILRSNQFHGPLP-KTICDLAFLQILDLADNNLSGAIPK-CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRN  729 (840)
Q Consensus       652 ~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N  729 (840)
                      .+++.|++++|++++... ..+..+++|+.|++++|++++..+. .+..++                   +|+.|++++|
T Consensus       401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-------------------~L~~L~Ls~N  461 (844)
T 3j0a_A          401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-------------------SLEQLFLGEN  461 (844)
T ss_dssp             TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT-------------------TCCBCEEESC
T ss_pred             cccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC-------------------ccccccCCCC
Confidence            689999999999987532 3456899999999999999865443 233344                   4499999999


Q ss_pred             ccc-----ccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 003200          730 NFS-----GEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT  804 (840)
Q Consensus       730 ~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  804 (840)
                      .++     +..+..+.++++|+.|+|++|++++.+|..|..+++|++|+|++|++++..|..+.  ++|++|++++|+++
T Consensus       462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~  539 (844)
T 3j0a_A          462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL  539 (844)
T ss_dssp             CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred             ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence            997     44556788999999999999999999999999999999999999999987777666  89999999999999


Q ss_pred             ccCCCCCcCCCcCcCCCCCC-CCC
Q 003200          805 GKIPLSTQLQSFNASSFAGN-DLC  827 (840)
Q Consensus       805 g~ip~~~~~~~~~~~~~~gn-~lc  827 (840)
                      |.+|..  |..+....+.|| ..|
T Consensus       540 ~~~~~~--~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          540 APNPDV--FVSLSVLDITHNKFIC  561 (844)
T ss_dssp             CCCSCC--CSSCCEEEEEEECCCC
T ss_pred             CCChhH--hCCcCEEEecCCCccc
Confidence            999965  556665666677 555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.7e-48  Score=444.57  Aligned_cols=231  Identities=21%  Similarity=0.247  Sum_probs=175.9

Q ss_pred             cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCC--CcccccCCCCcEEe
Q 003200          556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKI--PISLKNCTALASLD  633 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~  633 (840)
                      +|++|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|++++..  |..+.++++|++|+
T Consensus       305 ~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  379 (570)
T 2z63_A          305 GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD  379 (570)
T ss_dssp             CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred             CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence            4555555555554 3332  2455666666666666554443  45666777777777666443  56677777777777


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCC-ccccCccccceeecccccccccCCccccccccCcccccccCcc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP-KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV  712 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  712 (840)
                      +++|.+.+..+. +. .+++|+.|++++|.+.+..| ..+..+++|+.|++++|++.+..|..+..+++|          
T Consensus       380 l~~n~l~~~~~~-~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------  447 (570)
T 2z63_A          380 LSFNGVITMSSN-FL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL----------  447 (570)
T ss_dssp             CCSCSEEEEEEE-EE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----------
T ss_pred             CCCCcccccccc-cc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC----------
Confidence            777777644333 44 67778888888887777655 467788888889999888888888888777766          


Q ss_pred             cccccCCcceEEeCCCCccc-ccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCC
Q 003200          713 VYREILPLVSLLDISRNNFS-GEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT  791 (840)
Q Consensus       713 ~~~~~~~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  791 (840)
                               +.|++++|+++ +.+|..+..+++|++|++++|++++..|..|+.+++|++|++++|++++..|..+..++
T Consensus       448 ---------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          448 ---------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             ---------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ---------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence                     88999999987 57888899999999999999999988899999999999999999999988888899999


Q ss_pred             CCCeEeccCCcccccCCCCCc
Q 003200          792 FLNHLNLSNNNLTGKIPLSTQ  812 (840)
Q Consensus       792 ~L~~L~ls~N~l~g~ip~~~~  812 (840)
                      +|++|++++|++++.+|....
T Consensus       519 ~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          519 SLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             TCCEEECCSSCBCCCTTTTHH
T ss_pred             CCcEEEecCCcccCCCcchHH
Confidence            999999999999999887543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4e-48  Score=447.36  Aligned_cols=499  Identities=21%  Similarity=0.224  Sum_probs=289.3

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEE
Q 003200          106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLD  185 (840)
Q Consensus       106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  185 (840)
                      +++++|||++|.++++ .+..+..+++|++|++++|++++..|.+|+++++|++|++++|.+....+..|.++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            4688888888888754 455677788888888888888877777788888888888888887777777777777777777


Q ss_pred             ccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC----
Q 003200          186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL----  261 (840)
Q Consensus       186 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L----  261 (840)
                      +++|+++..+..  .++.+++|++|++++|.+.+..     +|..++++++|++|++++|.+++..+..++.+++|    
T Consensus       107 L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~-----lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~  179 (570)
T 2z63_A          107 AVETNLASLENF--PIGHLKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  179 (570)
T ss_dssp             CTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred             ccccccccCCCc--cccccccccEEecCCCccceec-----ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence            777777665431  2444555555555555444321     12445555555555555555544444444444444    


Q ss_pred             cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCE
Q 003200          262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES  341 (840)
Q Consensus       262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~  341 (840)
                      ++|++++|.+++..+..+..+ +|+.|++++|......++..+..++.++..                            
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~----------------------------  230 (570)
T 2z63_A          180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVH----------------------------  230 (570)
T ss_dssp             CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEE----------------------------
T ss_pred             hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCcccccee----------------------------
Confidence            445555555444444433333 444444444211111222223333333222                            


Q ss_pred             EEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCC--CCCEEEccCC-ccccccChhhhccCCCCCEEEcc
Q 003200          342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS--TLRELQIYDN-KLNGTLSEFHFANLTKLSWFRVG  418 (840)
Q Consensus       342 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n-~l~~~i~~~~~~~l~~L~~L~L~  418 (840)
                       .+....+.        ....++          ......+.+++  .++.++++++ .+.+.++. .+..+++|+.++++
T Consensus       231 -~l~~~~~~--------~~~~l~----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~  290 (570)
T 2z63_A          231 -RLVLGEFR--------NEGNLE----------KFDKSALEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLV  290 (570)
T ss_dssp             -EEEEEECC--------CCSSCE----------ECCTTTTGGGGGSEEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEE
T ss_pred             -eecccccc--------Cchhhh----------hcchhhhccccccchhhhhhhcchhhhhhchh-hhcCcCcccEEEec
Confidence             22111110        001111          01111111111  1344444444 33322222 34444444444444


Q ss_pred             CcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccc
Q 003200          419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGK  498 (840)
Q Consensus       419 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~  498 (840)
                      +|.+.                         .+|.++..+ +|++|++++|++.....    ..                 
T Consensus       291 ~~~l~-------------------------~l~~~~~~~-~L~~L~l~~n~~~~l~~----~~-----------------  323 (570)
T 2z63_A          291 SVTIE-------------------------RVKDFSYNF-GWQHLELVNCKFGQFPT----LK-----------------  323 (570)
T ss_dssp             SCEEC-------------------------SCCBCCSCC-CCSEEEEESCBCSSCCB----CB-----------------
T ss_pred             Cccch-------------------------hhhhhhccC-CccEEeeccCcccccCc----cc-----------------
Confidence            44332                         122333333 44445444444432211    01                 


Q ss_pred             cccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCC
Q 003200          499 ISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSY  578 (840)
Q Consensus       499 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  578 (840)
                                                                             +++|+.|++++|.+.+..+.  ..+
T Consensus       324 -------------------------------------------------------l~~L~~L~l~~n~~~~~~~~--~~~  346 (570)
T 2z63_A          324 -------------------------------------------------------LKSLKRLTFTSNKGGNAFSE--VDL  346 (570)
T ss_dssp             -------------------------------------------------------CSSCCEEEEESCBSCCBCCC--CBC
T ss_pred             -------------------------------------------------------ccccCEEeCcCCcccccccc--ccC
Confidence                                                                   23344444444443333322  344


Q ss_pred             CCcCEEEccCCcCCCCC--CcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccE
Q 003200          579 QNLKVLKLSNNKFSGNL--PNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLV  656 (840)
Q Consensus       579 ~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~  656 (840)
                      ++|++|++++|++++..  +..+..+++|++|++++|++.+..+ .+..+++|++|++++|.+.+..|......+++|++
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            55555555555554332  3445555666666666666654333 36666777777777777765555333336777777


Q ss_pred             EEccCCcccccCCccccCccccceeeccccccc-ccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccC
Q 003200          657 LILRSNQFHGPLPKTICDLAFLQILDLADNNLS-GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI  735 (840)
Q Consensus       657 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  735 (840)
                      |++++|.+.+..|..+..+++|+.|++++|+++ +.+|..+..+++|                   +.|++++|++++..
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L-------------------~~L~l~~n~l~~~~  486 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------------TFLDLSQCQLEQLS  486 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------------CEEECTTSCCCEEC
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-------------------CEEECCCCccccCC
Confidence            777777777777778888888888888888887 5678888777766                   88999999999888


Q ss_pred             cccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCc
Q 003200          736 LSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQ  785 (840)
Q Consensus       736 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  785 (840)
                      |..+.++++|++|++++|++++..|..|.++++|++|++++|++++..|.
T Consensus       487 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            88899999999999999999988888899999999999999999987764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.4e-46  Score=430.11  Aligned_cols=199  Identities=23%  Similarity=0.303  Sum_probs=129.7

Q ss_pred             CcCEEEccCCcCCCCCCccc-CCCCcccEEEccCCcCcCCCC---cccccCCCCcEEeCCCCcccccCC--hhhhhccCC
Q 003200          580 NLKVLKLSNNKFSGNLPNSL-GSITSLVWLYLRKNRLSGKIP---ISLKNCTALASLDVDENEFVGNIP--TWFGERFSR  653 (840)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~ls~N~l~~~~p--~~~~~~l~~  653 (840)
                      +|++|++++|++. .+|..+ ..+++|++|++++|++++.+|   ..+..+++|++|++++|++++..+  ..+. .+++
T Consensus       311 ~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~l~~  388 (549)
T 2z81_A          311 KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL-TLKN  388 (549)
T ss_dssp             TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG-GCTT
T ss_pred             cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh-cCCC
Confidence            3444444444443 223222 234444444444444443332   124445555555555555543221  1222 4566


Q ss_pred             ccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccc
Q 003200          654 MLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG  733 (840)
Q Consensus       654 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  733 (840)
                      |++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+.                     ++|+.|++++|++++
T Consensus       389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~---------------------~~L~~L~Ls~N~l~~  445 (549)
T 2z81_A          389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP---------------------QTLEVLDVSNNNLDS  445 (549)
T ss_dssp             CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC---------------------TTCSEEECCSSCCSC
T ss_pred             CCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc---------------------CCceEEECCCCChhh
Confidence            666666666666 45666667777888888888776 4443321                     234888999998886


Q ss_pred             cCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCC
Q 003200          734 EILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPL  809 (840)
Q Consensus       734 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  809 (840)
                      .+    ..+++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..+..+++|++|++++|++++..|.
T Consensus       446 ~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          446 FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            43    57888999999999998 6776 57889999999999999988888899999999999999999988874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-45  Score=423.49  Aligned_cols=496  Identities=20%  Similarity=0.229  Sum_probs=367.3

Q ss_pred             CccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCC
Q 003200           62 CCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDT  141 (840)
Q Consensus        62 ~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n  141 (840)
                      .|.|.|+ |+....                  -...+|+.+.  ++|++|+|++|.+++. .|..++.+++|++|++++|
T Consensus         3 ~C~~~~~-c~~~~~------------------~l~~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n   60 (549)
T 2z81_A            3 SCDASGV-CDGRSR------------------SFTSIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSS   60 (549)
T ss_dssp             EECTTSE-EECTTS------------------CCSSCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTS
T ss_pred             cCCCCce-EECCCC------------------ccccccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCC
Confidence            4999998 863221                  2234565554  7899999999999865 5778999999999999999


Q ss_pred             cccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCC-CCcC
Q 003200          142 QFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCS-LHHF  220 (840)
Q Consensus       142 ~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~  220 (840)
                      ++++..|.+|+++++|++|++++|.+....+..|+++++|++|++++|++++.+ .+..++++++|++|++++|. +..+
T Consensus        61 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~  139 (549)
T 2z81_A           61 RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-VTSLFPNLTNLQTLRIGNVETFSEI  139 (549)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC-SSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc-hhhhhhccCCccEEECCCCcccccc
Confidence            999988899999999999999999999888888999999999999999998642 23467889999999999998 5555


Q ss_pred             CCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccC
Q 003200          221 PTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRI  300 (840)
Q Consensus       221 ~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~  300 (840)
                      ++      ..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.......+..+++|++|++++ +.+.+..
T Consensus       140 ~~------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~  212 (549)
T 2z81_A          140 RR------IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD-TNLARFQ  212 (549)
T ss_dssp             CT------TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES-CBCTTCC
T ss_pred             CH------hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC-Ccccccc
Confidence            44      6789999999999999999999999999999999999999988743333456799999999999 5666532


Q ss_pred             --c-ccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccC------ccccCCCCCCCEEEccCC
Q 003200          301 --P-RSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHL------TDQLGQFRNLVTLNLANN  371 (840)
Q Consensus       301 --~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~L~~n  371 (840)
                        + .....+++|+.|++++|.+.+..+..+..... ..++++.+++++|.+.+..      ...+..+++|+.|++.++
T Consensus       213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  291 (549)
T 2z81_A          213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR-YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL  291 (549)
T ss_dssp             CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG-GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred             ccccchhhhhhcccceeccccccchhHHHHHHHHhh-hhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence              1 22345788999999999988876665543221 1238889999988876632      123456778888888887


Q ss_pred             cccccc-----cccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccC
Q 003200          372 SIVGLI-----PESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYV  446 (840)
Q Consensus       372 ~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~  446 (840)
                      .+....     +..+...++|++|++++|.+. .+|...+.++++|++|++++|++....+..                 
T Consensus       292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------  353 (549)
T 2z81_A          292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN-----------------  353 (549)
T ss_dssp             BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH-----------------
T ss_pred             ccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccc-----------------
Confidence            765321     112233567888888888875 677655667888888888877766432110                 


Q ss_pred             CCCCCccccCCCCCcEEEccCCCCCCCcc-hHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCC
Q 003200          447 GSRFPQWLHSQKHLQYLNLLNSRISDIFP-IRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLV  525 (840)
Q Consensus       447 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  525 (840)
                          +..+..+++|++|++++|++++..+ ...+..+++|++|++++|++++.+..+...++|++|++++|.++......
T Consensus       354 ----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~  429 (549)
T 2z81_A          354 ----SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI  429 (549)
T ss_dssp             ----HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS
T ss_pred             ----hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh
Confidence                1224566777788888887776643 23346677777777777777744334444445555555554443221111


Q ss_pred             CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcc
Q 003200          526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSL  605 (840)
Q Consensus       526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  605 (840)
                                                  .++|++|++++|++++.+    ..+++|++|++++|+++ .+|. ...+++|
T Consensus       430 ----------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L  475 (549)
T 2z81_A          430 ----------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVL  475 (549)
T ss_dssp             ----------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred             ----------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccC
Confidence                                        146777777777777542    46778888888888888 5555 4567889


Q ss_pred             cEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCC
Q 003200          606 VWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIP  644 (840)
Q Consensus       606 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  644 (840)
                      ++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus       476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999999999988888888889999999999999888776

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.4e-44  Score=420.65  Aligned_cols=515  Identities=20%  Similarity=0.223  Sum_probs=297.7

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEc
Q 003200          107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL  186 (840)
Q Consensus       107 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L  186 (840)
                      ++++|||++|.|+++ .+..|.++++|++|+|++|+|++..|.+|+++++|++|+|++|+++...+.+|.++++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            567777777777643 2345666777777777777776666666666777777766666665555555555555555554


Q ss_pred             cCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCC-CCcccccCCCCCcEEE
Q 003200          187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNS-SIPDWLYKFSPLECLN  265 (840)
Q Consensus       187 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~  265 (840)
                      ++|++++                          +++      ..|+.+++|++|++++|.+.+ ..|..++.+++|++|+
T Consensus       132 s~N~l~~--------------------------l~~------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  179 (635)
T 4g8a_A          132 VETNLAS--------------------------LEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  179 (635)
T ss_dssp             TTSCCCC--------------------------STT------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCcCCC--------------------------CCh------hhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence            4444433                          332      457777778888887777764 3566667777777777


Q ss_pred             cccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEcc
Q 003200          266 LRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR  345 (840)
Q Consensus       266 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  345 (840)
                      +++|.+++..+..+..+.+++.                                                  ....++++
T Consensus       180 L~~N~l~~~~~~~l~~L~~l~~--------------------------------------------------~~~~~~ls  209 (635)
T 4g8a_A          180 LSSNKIQSIYCTDLRVLHQMPL--------------------------------------------------LNLSLDLS  209 (635)
T ss_dssp             CCSSCCCEECGGGGHHHHTCTT--------------------------------------------------CCCEEECT
T ss_pred             ccCccccccccccccchhhhhh--------------------------------------------------hhhhhhcc
Confidence            7777776655555544333221                                                  12233333


Q ss_pred             CCcccccCccccCCCCCCCEEEccCCcccc-cccccccCCCCCCEEEccCCccccc-----cChhhhccCCCCCEEEccC
Q 003200          346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVG-LIPESFGQLSTLRELQIYDNKLNGT-----LSEFHFANLTKLSWFRVGG  419 (840)
Q Consensus       346 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~-----i~~~~~~~l~~L~~L~L~~  419 (840)
                      .|.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+.....     .....+..+..+..     
T Consensus       210 ~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~-----  283 (635)
T 4g8a_A          210 LNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI-----  283 (635)
T ss_dssp             TCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE-----
T ss_pred             cCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh-----
Confidence            333333222222 22345556666654432 2233455566665555433322110     01111122222222     


Q ss_pred             cccceeccCCCCCccCccEEecccccCCC---CCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccc
Q 003200          420 NQLTFEVKHDWIPPFQLVALGLHNCYVGS---RFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFH  496 (840)
Q Consensus       420 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~  496 (840)
                                         ..+..+....   .....+....+++.+++.++.+....+                     
T Consensus       284 -------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---------------------  323 (635)
T 4g8a_A          284 -------------------EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---------------------  323 (635)
T ss_dssp             -------------------EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---------------------
T ss_pred             -------------------hhhhhhhhcccccchhhhhhhhcccccccccccccccccc---------------------
Confidence                               2222111110   111222333444444444444333222                     


Q ss_pred             cccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCcccc
Q 003200          497 GKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM  576 (840)
Q Consensus       497 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  576 (840)
                           +.....++.|++.+|.+.+..+..+                            +.|+.++++.|......  ...
T Consensus       324 -----~~~~~~L~~L~l~~~~~~~~~~~~l----------------------------~~L~~l~l~~n~~~~~~--~~~  368 (635)
T 4g8a_A          324 -----FSYNFGWQHLELVNCKFGQFPTLKL----------------------------KSLKRLTFTSNKGGNAF--SEV  368 (635)
T ss_dssp             -----GGSCCCCSEEEEESCEESSCCCCBC----------------------------TTCCEEEEESCCSCCBC--CCC
T ss_pred             -----cccchhhhhhhcccccccCcCcccc----------------------------hhhhhcccccccCCCCc--ccc
Confidence                 2222333444444443333322223                            34445555555443221  223


Q ss_pred             CCCCcCEEEccCCcCCC--CCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCc
Q 003200          577 SYQNLKVLKLSNNKFSG--NLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRM  654 (840)
Q Consensus       577 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L  654 (840)
                      .+++|+.|++++|.+..  ..+..+..+.+|+.+++..|.+. ..+..+..+++|+.+++++|......+...+..+.++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence            45566666666665542  23334445566666666666655 3344566667777777777766665555545567777


Q ss_pred             cEEEccCCcccccCCccccCccccceeeccccccc-ccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccc
Q 003200          655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS-GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG  733 (840)
Q Consensus       655 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  733 (840)
                      +.++++.|.+.+..+..+..+++|+.|++++|++. +..|..+..+++|                   ++|||++|++++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-------------------~~L~Ls~N~L~~  508 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------------TFLDLSQCQLEQ  508 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------------CEEECTTSCCCE
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-------------------CEEECCCCccCC
Confidence            77777777777777777777888888888888744 3456677776666                   788888888888


Q ss_pred             cCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC-CCCCeEeccCCcccc
Q 003200          734 EILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL-TFLNHLNLSNNNLTG  805 (840)
Q Consensus       734 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g  805 (840)
                      .+|..|+++++|++|+|++|++++..|..|+.+++|++|||++|++++..|+.+..+ ++|++|++++|+++.
T Consensus       509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            888888888888888888888887778888888888888888888888888888877 578888888888764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.7e-45  Score=413.86  Aligned_cols=463  Identities=19%  Similarity=0.215  Sum_probs=241.3

Q ss_pred             EEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEE
Q 003200          209 ELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWL  288 (840)
Q Consensus       209 ~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  288 (840)
                      +|++++|.++.+|.       .+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+..+++|++|
T Consensus         4 ~l~ls~n~l~~ip~-------~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            4 LVDRSKNGLIHVPK-------DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             EEECTTSCCSSCCC-------SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred             eEecCCCCcccccc-------ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence            45566666555442       222  667777777777776666667777777777777777776666667777777777


Q ss_pred             ecccccCccccCcccccCCCCCcEEEcCCCcccc-cchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCC--CE
Q 003200          289 DLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQ-EISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNL--VT  365 (840)
Q Consensus       289 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~  365 (840)
                      ++++ +.+. .+|..  .+++|++|++++|.+.+ .+|..+..++     +|++|++++|.+.+   ..+..+++|  ++
T Consensus        75 ~Ls~-N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~-----~L~~L~L~~n~l~~---~~~~~l~~L~L~~  142 (520)
T 2z7x_B           75 DLSH-NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS-----QLKFLGLSTTHLEK---SSVLPIAHLNISK  142 (520)
T ss_dssp             ECCS-SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT-----TCCEEEEEESSCCG---GGGGGGTTSCEEE
T ss_pred             ecCC-Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCC-----cceEEEecCcccch---hhccccccceeeE
Confidence            7776 3444 34433  45555555555555443 2333333333     44444444444433   123333344  55


Q ss_pred             EEccCCcc--cccccccccCCC-CCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecc
Q 003200          366 LNLANNSI--VGLIPESFGQLS-TLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLH  442 (840)
Q Consensus       366 L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  442 (840)
                      |++++|.+  .+..|..+..+. ....+++++|.+.+.++...+.++++|+.+++++|.......               
T Consensus       143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---------------  207 (520)
T 2z7x_B          143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS---------------  207 (520)
T ss_dssp             EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH---------------
T ss_pred             EEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc---------------
Confidence            55555554  444444443332 122334444444444443334444444444443332000000               


Q ss_pred             cccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCC
Q 003200          443 NCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPL  522 (840)
Q Consensus       443 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  522 (840)
                        .+.+..+ .+..+++|+.|++++|.+++.....+..                                          
T Consensus       208 --~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~------------------------------------------  242 (520)
T 2z7x_B          208 --YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQ------------------------------------------  242 (520)
T ss_dssp             --HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHH------------------------------------------
T ss_pred             --eeecchh-hhccccchhhccccccccCHHHHHHHHH------------------------------------------
Confidence              0000111 2333333444443333332211111100                                          


Q ss_pred             CCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccc-----cCCCCcCEEEccCCcCCCCCC-
Q 003200          523 PLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW-----MSYQNLKVLKLSNNKFSGNLP-  596 (840)
Q Consensus       523 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~-  596 (840)
                                                 .. ..++|++|++++|.+++.+|..+     ..+++|+.+++++|.+  .+| 
T Consensus       243 ---------------------------~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~  292 (520)
T 2z7x_B          243 ---------------------------LV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ  292 (520)
T ss_dssp             ---------------------------HH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT
T ss_pred             ---------------------------Hh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch
Confidence                                       00 01234444444444444444433     4444444444444444  222 


Q ss_pred             cccCCC---CcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccc--cCCcc
Q 003200          597 NSLGSI---TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHG--PLPKT  671 (840)
Q Consensus       597 ~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~--~~p~~  671 (840)
                      ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++.+|.++. .+++|++|++++|++++  .+|..
T Consensus       293 ~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~  369 (520)
T 2z7x_B          293 SYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEM  369 (520)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHH
T ss_pred             hhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHH
Confidence            222222   33455555554443211  113445555555555555544454443 45555555555555554  33455


Q ss_pred             ccCccccceeecccccccccCCcc-ccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeC
Q 003200          672 ICDLAFLQILDLADNNLSGAIPKC-ISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINF  750 (840)
Q Consensus       672 l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  750 (840)
                      +..+++|++|++++|++++.+|.. +..+++|                   +.|++++|++++.+|..+.  ++|+.|++
T Consensus       370 ~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L-------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~L  428 (520)
T 2z7x_B          370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL-------------------LSLNMSSNILTDTIFRCLP--PRIKVLDL  428 (520)
T ss_dssp             HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC-------------------CEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred             HhhCCCCCEEECCCCcCCcccccchhccCccC-------------------CEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence            666777777777777777545543 4444444                   7778888877777666654  67888888


Q ss_pred             CCCcccccCCcchhccCCCCeEeCCCCcccccCCcc-ccCCCCCCeEeccCCcccccCC
Q 003200          751 SFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQS-MSSLTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       751 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip  808 (840)
                      ++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus       429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          429 HSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            888888 77777778888888888888888 46655 7888888888888888887654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=409.30  Aligned_cols=467  Identities=21%  Similarity=0.240  Sum_probs=285.9

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccC
Q 003200          109 SYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS  188 (840)
Q Consensus       109 ~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~  188 (840)
                      ++||+++|.++  .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+....+..|.++++|++|++++
T Consensus         3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            56788888887  4666655  7888888888888777667788888888888888888777777788888888888888


Q ss_pred             cCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC--cEEEc
Q 003200          189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL--ECLNL  266 (840)
Q Consensus       189 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L  266 (840)
                      |+++.++..     .+++|++|++++|.+++.+     +|..++.+++|++|++++|.+.+   ..+..+++|  ++|++
T Consensus        79 N~l~~lp~~-----~l~~L~~L~L~~N~l~~~~-----~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           79 NKLVKISCH-----PTVNLKHLDLSFNAFDALP-----ICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL  145 (520)
T ss_dssp             SCCCEEECC-----CCCCCSEEECCSSCCSSCC-----CCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred             CceeecCcc-----ccCCccEEeccCCcccccc-----chhhhccCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence            877765432     6777888888888776642     23678888888888888888765   346666666  88888


Q ss_pred             ccCcc--ccccchhhhcCC-CCcEEecccccCccccC-cccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEE
Q 003200          267 RNNSL--QGTISDAIGNLT-SVSWLDLSINIGLQGRI-PRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESL  342 (840)
Q Consensus       267 ~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  342 (840)
                      ++|.+  .+..|..+..+. +...+++++| ...+.+ +..+..+++|+.+++++|........                
T Consensus       146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------  208 (520)
T 2z7x_B          146 VLGETYGEKEDPEGLQDFNTESLHIVFPTN-KEFHFILDVSVKTVANLELSNIKCVLEDNKCSY----------------  208 (520)
T ss_dssp             EECTTTTSSCCTTTTTTCCEEEEEEECCSS-SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH----------------
T ss_pred             ecccccccccccccccccccceEEEEeccC-cchhhhhhhhhhcccceeeccccccccccccce----------------
Confidence            88887  667777766665 2334555663 333333 34566677777777776651111111                


Q ss_pred             EccCCcccccCccccCCCCCCCEEEccCCccccccccccc---CCCCCCEEEccCCccccccChhhh----ccCCCCCEE
Q 003200          343 DMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFG---QLSTLRELQIYDNKLNGTLSEFHF----ANLTKLSWF  415 (840)
Q Consensus       343 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~i~~~~~----~~l~~L~~L  415 (840)
                            +.+.++ .++.+++|++|++++|.+.+..+..+.   ..++|++|++++|.+.|.+|...+    ..+++|+.+
T Consensus       209 ------~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l  281 (520)
T 2z7x_B          209 ------FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH  281 (520)
T ss_dssp             ------HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred             ------eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence                  122222 355566677777766666543222211   135777777777777766665322    555555554


Q ss_pred             EccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCccc
Q 003200          416 RVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQF  495 (840)
Q Consensus       416 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l  495 (840)
                      ++++|.+.                                                 .....+...+             
T Consensus       282 ~l~~n~~~-------------------------------------------------~p~~~~~~~~-------------  299 (520)
T 2z7x_B          282 QVVSDVFG-------------------------------------------------FPQSYIYEIF-------------  299 (520)
T ss_dssp             EEEECCCC-------------------------------------------------SCTHHHHHHH-------------
T ss_pred             ccccccee-------------------------------------------------cchhhhhccc-------------
Confidence            44443321                                                 0001110000             


Q ss_pred             ccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccc
Q 003200          496 HGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW  575 (840)
Q Consensus       496 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  575 (840)
                                                                               ..++|+.|++++|.+.+..  .+
T Consensus       300 ---------------------------------------------------------~~~~L~~L~l~~n~l~~~~--~~  320 (520)
T 2z7x_B          300 ---------------------------------------------------------SNMNIKNFTVSGTRMVHML--CP  320 (520)
T ss_dssp             ---------------------------------------------------------HTCCCSEEEEESSCCCCCC--CC
T ss_pred             ---------------------------------------------------------ccCceeEEEcCCCcccccc--ch
Confidence                                                                     0123444444444443211  11


Q ss_pred             cCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcC--CCCcccccCCCCcEEeCCCCcccccCChhhhhccCC
Q 003200          576 MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG--KIPISLKNCTALASLDVDENEFVGNIPTWFGERFSR  653 (840)
Q Consensus       576 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~  653 (840)
                      ..+++|++|++++|++++..|..++.+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|..       
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-------  393 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-------  393 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-------
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-------
Confidence            345556666666666665555556666666666666666654  33445555666666666666655434432       


Q ss_pred             ccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccc
Q 003200          654 MLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG  733 (840)
Q Consensus       654 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  733 (840)
                                       .+..+++|+.|++++|++++.+|..+.  ++|                   +.|++++|+++ 
T Consensus       394 -----------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L-------------------~~L~Ls~N~l~-  434 (520)
T 2z7x_B          394 -----------------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRI-------------------KVLDLHSNKIK-  434 (520)
T ss_dssp             -----------------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTC-------------------CEEECCSSCCC-
T ss_pred             -----------------hhccCccCCEEECcCCCCCcchhhhhc--ccC-------------------CEEECCCCccc-
Confidence                             233455566666666666555554432  233                   67777777777 


Q ss_pred             cCcccccCCCCCCeEeCCCCcccccCCcc-hhccCCCCeEeCCCCcccccCC
Q 003200          734 EILSEVTNLKALQSINFSFNTFTGRIPES-IGTMRALESVDFSVNQLSGEIP  784 (840)
Q Consensus       734 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p  784 (840)
                      .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++..+
T Consensus       435 ~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          435 SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            67777778888888888888888 45554 7788888888888888876543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-42  Score=407.64  Aligned_cols=138  Identities=20%  Similarity=0.129  Sum_probs=112.0

Q ss_pred             CCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCC
Q 003200           75 GHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNL  154 (840)
Q Consensus        75 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l  154 (840)
                      ..+++|||+++       .+.+..+.+|.++++|++|||++|.++++ .|..|+.+++|++|+|++|++++..+..|.++
T Consensus        52 ~~~~~LdLs~N-------~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L  123 (635)
T 4g8a_A           52 FSTKNLDLSFN-------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGL  123 (635)
T ss_dssp             TTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred             cCCCEEEeeCC-------CCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence            46899999997       66655567899999999999999999964 45678999999999999999998777889999


Q ss_pred             CCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCC
Q 003200          155 SDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFP  221 (840)
Q Consensus       155 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  221 (840)
                      ++|++|++++|++.......|+++++|++|++++|.+...+ .+..++.+++|++|++++|.+++.+
T Consensus       124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccc
Confidence            99999999999999888888999999999999999887642 1233444555555555555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.8e-44  Score=417.00  Aligned_cols=367  Identities=18%  Similarity=0.274  Sum_probs=237.6

Q ss_pred             CCcccccCccccCCCCCCCEEEccCCccccc-----------------cccccc--CCCCCCEEEccCCccccccChhhh
Q 003200          346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGL-----------------IPESFG--QLSTLRELQIYDNKLNGTLSEFHF  406 (840)
Q Consensus       346 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~i~~~~~  406 (840)
                      .|++++ +|..++++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+|. .+
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FL  269 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HH
Confidence            455556 566666666666666666666664                 566666  666666666666666666664 56


Q ss_pred             ccCCCCCEEEccCcc-cce-eccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCC
Q 003200          407 ANLTKLSWFRVGGNQ-LTF-EVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQ  484 (840)
Q Consensus       407 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~  484 (840)
                      .++++|++|++++|+ +++ ..+..+..+                  ..+..+++|++|++++|+++.+.....+..+++
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L------------------~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~  331 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQAL------------------ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK  331 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHH------------------HHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTT
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhh------------------hccccCCCCCEEECCCCcCCccCchhhhccCCC
Confidence            666666666666665 543 222211111                  001223566666666666663322112233333


Q ss_pred             ccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccC
Q 003200          485 LKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTD  564 (840)
Q Consensus       485 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~  564 (840)
                      |++|++++|.+.|.                                            +|     .+..+++|++|++++
T Consensus       332 L~~L~L~~N~l~g~--------------------------------------------ip-----~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          332 LGMLECLYNQLEGK--------------------------------------------LP-----AFGSEIKLASLNLAY  362 (636)
T ss_dssp             CCEEECCSCCCEEE--------------------------------------------CC-----CCEEEEEESEEECCS
T ss_pred             CCEEeCcCCcCccc--------------------------------------------hh-----hhCCCCCCCEEECCC
Confidence            44433333333322                                            22     122346777777777


Q ss_pred             CcCccccCccccCCCC-cCEEEccCCcCCCCCCcccCCCC--cccEEEccCCcCcCCCCcccc-------cCCCCcEEeC
Q 003200          565 NYLQGEIPDCWMSYQN-LKVLKLSNNKFSGNLPNSLGSIT--SLVWLYLRKNRLSGKIPISLK-------NCTALASLDV  634 (840)
Q Consensus       565 n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~l  634 (840)
                      |.++ .+|..+..+++ |++|++++|+++ .+|..+....  +|++|++++|++++..|..+.       .+++|++|++
T Consensus       363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L  440 (636)
T 4eco_A          363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL  440 (636)
T ss_dssp             SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred             Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence            7777 66777777777 888888888887 6676666544  778888888888777777666       5556666666


Q ss_pred             CCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccc
Q 003200          635 DENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVY  714 (840)
Q Consensus       635 s~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  714 (840)
                      ++|+++ .+|..++..+                        ++|+.|++++|+++ .+|..+.....           ..
T Consensus       441 s~N~l~-~lp~~~~~~l------------------------~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------~~  483 (636)
T 4eco_A          441 SNNQIS-KFPKELFSTG------------------------SPLSSINLMGNMLT-EIPKNSLKDEN-----------EN  483 (636)
T ss_dssp             CSSCCC-SCCTHHHHTT------------------------CCCSEEECCSSCCS-BCCSSSSEETT-----------EE
T ss_pred             cCCccC-cCCHHHHccC------------------------CCCCEEECCCCCCC-CcCHHHhcccc-----------cc
Confidence            666665 4555444334                        44555555555554 33332211100           00


Q ss_pred             cccCCcceEEeCCCCcccccCccccc--CCCCCCeEeCCCCcccccCCcchhccCCCCeEeC------CCCcccccCCcc
Q 003200          715 REILPLVSLLDISRNNFSGEILSEVT--NLKALQSINFSFNTFTGRIPESIGTMRALESVDF------SVNQLSGEIPQS  786 (840)
Q Consensus       715 ~~~~~~L~~L~Ls~N~l~~~~~~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~  786 (840)
                      ...+++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..++++++|++|++      ++|++.+.+|..
T Consensus       484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~  561 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG  561 (636)
T ss_dssp             CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred             ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence            001224499999999999 7888887  99999999999999997 9999999999999999      568889999999


Q ss_pred             ccCCCCCCeEeccCCcccccCCCCCcCCCcCcCCCCCC
Q 003200          787 MSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN  824 (840)
Q Consensus       787 l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn  824 (840)
                      +..+++|++|++++|++ +.||..- +..+....+.+|
T Consensus       562 l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N  597 (636)
T 4eco_A          562 ITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDN  597 (636)
T ss_dssp             GGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSC
T ss_pred             HhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCC
Confidence            99999999999999999 8899762 245555555666

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.8e-43  Score=410.13  Aligned_cols=355  Identities=19%  Similarity=0.279  Sum_probs=229.4

Q ss_pred             CcccccCccccCCCCCCCEEEccCCcccc-----------------ccccccc--CCCCCCEEEccCCccccccChhhhc
Q 003200          347 SSIYGHLTDQLGQFRNLVTLNLANNSIVG-----------------LIPESFG--QLSTLRELQIYDNKLNGTLSEFHFA  407 (840)
Q Consensus       347 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~i~~~~~~  407 (840)
                      |++++ +|..++++++|++|+|++|.+++                 .+|..++  ++++|++|++++|.+.+.+|. .+.
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLY  512 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHh
Confidence            66666 67777777777777777777776                 2666666  777888888888777777775 677


Q ss_pred             cCCCCCEEEccCcc-cce-eccC-------CCCCccCccEEecccccCCCCCCc--cccCCCCCcEEEccCCCCCCCcch
Q 003200          408 NLTKLSWFRVGGNQ-LTF-EVKH-------DWIPPFQLVALGLHNCYVGSRFPQ--WLHSQKHLQYLNLLNSRISDIFPI  476 (840)
Q Consensus       408 ~l~~L~~L~L~~n~-l~~-~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~  476 (840)
                      ++++|+.|++++|+ +++ ..+.       .+..+++|+.|++++|.+. .+|.  .+..+++|++|++++|+++ .+| 
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-  589 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-  589 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence            77888888888776 665 3433       2334458888888888888 7777  8999999999999999887 333 


Q ss_pred             HHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCc
Q 003200          477 RFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKS  556 (840)
Q Consensus       477 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  556 (840)
                      . +..+                                                                        ++
T Consensus       590 ~-~~~L------------------------------------------------------------------------~~  596 (876)
T 4ecn_A          590 A-FGTN------------------------------------------------------------------------VK  596 (876)
T ss_dssp             C-CCTT------------------------------------------------------------------------SE
T ss_pred             h-hcCC------------------------------------------------------------------------Cc
Confidence            1 1223                                                                        34


Q ss_pred             ccEEeccCCcCccccCccccCCCC-cCEEEccCCcCCCCCCcccCCCCc--ccEEEccCCcCcCCCCcc---cc--cCCC
Q 003200          557 LEGLKLTDNYLQGEIPDCWMSYQN-LKVLKLSNNKFSGNLPNSLGSITS--LVWLYLRKNRLSGKIPIS---LK--NCTA  628 (840)
Q Consensus       557 L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~p~~---l~--~l~~  628 (840)
                      |+.|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..+..  |+.|++++|++.+.+|..   +.  .+++
T Consensus       597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~  674 (876)
T 4ecn_A          597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN  674 (876)
T ss_dssp             ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred             ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence            444444444444 34444444444 444444444444 34444433322  555555555544433321   11  2235


Q ss_pred             CcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCcccc--------CccccceeecccccccccCCcccc--c
Q 003200          629 LASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC--------DLAFLQILDLADNNLSGAIPKCIS--N  698 (840)
Q Consensus       629 L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~--------~l~~L~~L~Ls~N~l~~~~p~~~~--~  698 (840)
                      |+.|++++|+++ .+|..++..+++|+.|++++|+++ .+|..+.        ++++|+.|+|++|+++ .+|..+.  .
T Consensus       675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~  751 (876)
T 4ecn_A          675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT  751 (876)
T ss_dssp             EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred             cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence            555555555555 455554444555555555555555 3333222        2337777777777777 6666554  5


Q ss_pred             cccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCC------CcccccCCcchhccCCCCeE
Q 003200          699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSF------NTFTGRIPESIGTMRALESV  772 (840)
Q Consensus       699 l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L  772 (840)
                      +++|                   +.|+|++|++++ +|..+.++++|+.|+|++      |++.+.+|..|+++++|+.|
T Consensus       752 l~~L-------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L  811 (876)
T 4ecn_A          752 LPYL-------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL  811 (876)
T ss_dssp             CTTC-------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred             CCCc-------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence            5444                   777777777775 677777777777777765      77888888888888889999


Q ss_pred             eCCCCcccccCCccccCCCCCCeEeccCCcccccC
Q 003200          773 DFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKI  807 (840)
Q Consensus       773 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  807 (840)
                      +|++|++ +.+|..+.  ++|+.|+|++|++...-
T Consensus       812 ~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          812 QIGSNDI-RKVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             ECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             ECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence            9998888 68888766  58888999988876543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.5e-42  Score=393.82  Aligned_cols=161  Identities=20%  Similarity=0.326  Sum_probs=99.7

Q ss_pred             cCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCccccc--CCccccCccccceeecccccccccCCc-ccccccc
Q 003200          625 NCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGP--LPKTICDLAFLQILDLADNNLSGAIPK-CISNLTG  701 (840)
Q Consensus       625 ~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~  701 (840)
                      .+++|++|++++|++++.+|..+. .+++|++|++++|++++.  +|..+..+++|+.|++++|++++.+|. .+..+++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             CCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            344444444444444444444443 344455555555544432  234455666677777777776654444 2444444


Q ss_pred             CcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200          702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       702 L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                      |                   +.|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++ 
T Consensus       430 L-------------------~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-  486 (562)
T 3a79_B          430 I-------------------LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-  486 (562)
T ss_dssp             C-------------------CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-
T ss_pred             C-------------------CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-
Confidence            4                   6777777777766665544  57777777777777 66766667778888888888877 


Q ss_pred             cCCcc-ccCCCCCCeEeccCCcccccCCC
Q 003200          782 EIPQS-MSSLTFLNHLNLSNNNLTGKIPL  809 (840)
Q Consensus       782 ~~p~~-l~~l~~L~~L~ls~N~l~g~ip~  809 (840)
                      .+|.. +..+++|++|++++|++.+..|.
T Consensus       487 ~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          487 SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            45555 77777888888888887776553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.5e-41  Score=385.54  Aligned_cols=462  Identities=22%  Similarity=0.274  Sum_probs=245.9

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccC
Q 003200          109 SYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS  188 (840)
Q Consensus       109 ~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~  188 (840)
                      +++|+++|.++  .+|..+.  ++|++|++++|.+++..|.+|.++++|++|++++|.++...+..|.++++|++|++++
T Consensus        34 ~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            55555555555  2444332  5566666666665555555556666666666666655555555556666666666666


Q ss_pred             cCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC--cEEEc
Q 003200          189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL--ECLNL  266 (840)
Q Consensus       189 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L  266 (840)
                      |+++.++..     .+++|++|++++|.+++.+.     |..++++++|++|++++|.+.+.   .+..+++|  ++|++
T Consensus       110 N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~-----p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L  176 (562)
T 3a79_B          110 NRLQNISCC-----PMASLRHLDLSFNDFDVLPV-----CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILL  176 (562)
T ss_dssp             SCCCEECSC-----CCTTCSEEECCSSCCSBCCC-----CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred             CcCCccCcc-----ccccCCEEECCCCCccccCc-----hHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEe
Confidence            665544332     46666666666666665431     25677777777777777776653   23334444  77777


Q ss_pred             ccCcc--ccccchhhhcCC--CCcEEecccccCccccCc-ccccCCCCCcEEEcCCCccc-ccchHHHHhhccCCCCCCC
Q 003200          267 RNNSL--QGTISDAIGNLT--SVSWLDLSINIGLQGRIP-RSMANFCNLKSVNLRGVHLS-QEISEILDIFSGCVSNGLE  340 (840)
Q Consensus       267 ~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~~~~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~L~  340 (840)
                      ++|.+  ++..|..+..+.  .+ .++++. +.+.+.++ ..+..+++|+.+++++|... ..++..+            
T Consensus       177 ~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~------------  242 (562)
T 3a79_B          177 DLVSYHIKGGETESLQIPNTTVL-HLVFHP-NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL------------  242 (562)
T ss_dssp             EESSCCCCSSSCCEEEECCEEEE-EEEECS-SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH------------
T ss_pred             ecccccccccCcccccccCcceE-EEEecC-ccchhhhhhhcccccceEEEecccccccccchHHHHH------------
Confidence            77777  666666665544  22 345555 33333333 33556666777777666421 0111111            


Q ss_pred             EEEccCCcccccCccccCCCCCCCEEEccCCcccccc----cccccCCCCCCEEEccCCccccccChhhh----ccCCCC
Q 003200          341 SLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLI----PESFGQLSTLRELQIYDNKLNGTLSEFHF----ANLTKL  412 (840)
Q Consensus       341 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~i~~~~~----~~l~~L  412 (840)
                                    ..+..+++|+.+++.++.+.+..    +..+ ..++|++|++++|.+.|.+|...|    .+++.|
T Consensus       243 --------------~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L  307 (562)
T 3a79_B          243 --------------SELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSL  307 (562)
T ss_dssp             --------------HHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred             --------------HHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchhe
Confidence                          12333445555555554443221    1111 234677777777777766665332    233333


Q ss_pred             CEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccC
Q 003200          413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGL  492 (840)
Q Consensus       413 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~  492 (840)
                      +.+++..+.+                                                 ......+...+          
T Consensus       308 ~~~~~~~~~~-------------------------------------------------~~p~~~~~~~~----------  328 (562)
T 3a79_B          308 MIEHVKNQVF-------------------------------------------------LFSKEALYSVF----------  328 (562)
T ss_dssp             EEEEEEECCC-------------------------------------------------SSCHHHHHHHH----------
T ss_pred             ehhhccccee-------------------------------------------------ecChhhhhhhh----------
Confidence            2222222211                                                 00001110000          


Q ss_pred             cccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccC
Q 003200          493 NQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP  572 (840)
Q Consensus       493 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  572 (840)
                                                                                  ...+|++|++++|.+.... 
T Consensus       329 ------------------------------------------------------------~~~~L~~L~l~~n~~~~~~-  347 (562)
T 3a79_B          329 ------------------------------------------------------------AEMNIKMLSISDTPFIHMV-  347 (562)
T ss_dssp             ------------------------------------------------------------HTCCCSEEEEESSCCCCCC-
T ss_pred             ------------------------------------------------------------ccCcceEEEccCCCccccc-
Confidence                                                                        0123444444444443211 


Q ss_pred             ccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCC--CCcccccCCCCcEEeCCCCcccccCChhhhhc
Q 003200          573 DCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK--IPISLKNCTALASLDVDENEFVGNIPTWFGER  650 (840)
Q Consensus       573 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  650 (840)
                       ....+++|++|++++|++++..|..++.+++|++|++++|++++.  +|..+.++++|++|++++|++++.+|..    
T Consensus       348 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----  422 (562)
T 3a79_B          348 -CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR----  422 (562)
T ss_dssp             -CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC----
T ss_pred             -CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh----
Confidence             113455566666666666555555555556666666666655532  2334555555555555555555434432    


Q ss_pred             cCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCc
Q 003200          651 FSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN  730 (840)
Q Consensus       651 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~  730 (840)
                                          .+..+++|+.|++++|++++.+|..+.  ++|                   +.|++++|+
T Consensus       423 --------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L-------------------~~L~L~~N~  461 (562)
T 3a79_B          423 --------------------TCAWAESILVLNLSSNMLTGSVFRCLP--PKV-------------------KVLDLHNNR  461 (562)
T ss_dssp             --------------------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTC-------------------SEEECCSSC
T ss_pred             --------------------hhcCcccCCEEECCCCCCCcchhhhhc--CcC-------------------CEEECCCCc
Confidence                                233445555556666655554444332  233                   667777777


Q ss_pred             ccccCcccccCCCCCCeEeCCCCcccccCCcc-hhccCCCCeEeCCCCcccccCC
Q 003200          731 FSGEILSEVTNLKALQSINFSFNTFTGRIPES-IGTMRALESVDFSVNQLSGEIP  784 (840)
Q Consensus       731 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p  784 (840)
                      ++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..|
T Consensus       462 l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          462 IM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             Cc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            76 56666667777888888888887 45554 7778888888888888876544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.8e-40  Score=347.81  Aligned_cols=293  Identities=30%  Similarity=0.491  Sum_probs=209.4

Q ss_pred             CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceecCCCC--CCEEEEEcCCCCCCCCCccccc--ccccccc
Q 003200           30 GCLETERRALLRFKQDLQDPSNRLASWTGDGDCCT--WAGVACGNVT--GHILELNLRNPSTSNPRSMLVG--KVNPALL  103 (840)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~--~~~~~~~  103 (840)
                      .|.++|++||++||+++.||. .+++|..+.+||.  |+||+|+..+  ++|++|+++++       .+.|  .+|+.+.
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-------~l~~~~~~~~~l~   73 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-------NLPKPYPIPSSLA   73 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-------CCSSCEECCGGGG
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC-------CccCCcccChhHh
Confidence            599999999999999998886 7899987889998  9999998655  89999999997       6777  7888888


Q ss_pred             CCCCCCEEeCCC-CCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCC
Q 003200          104 DLKHLSYLDLSS-NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLE  182 (840)
Q Consensus       104 ~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~  182 (840)
                      ++++|++|++++ |.+.+. +|..++.+++|++|++++|.+++.+|..|.++++|++|++++|.+....+          
T Consensus        74 ~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----------  142 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP----------  142 (313)
T ss_dssp             GCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC----------
T ss_pred             CCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC----------
Confidence            999999999985 888764 78888888899999998888888888888888888888887776543222          


Q ss_pred             EEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCC-CC
Q 003200          183 HLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFS-PL  261 (840)
Q Consensus       183 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L  261 (840)
                                                                    ..+..+++|++|++++|.+++.+|..+..++ +|
T Consensus       143 ----------------------------------------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L  176 (313)
T 1ogq_A          143 ----------------------------------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             ----------------------------------------------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             ----------------------------------------------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence                                                          4455566666666666666666666666665 66


Q ss_pred             cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCE
Q 003200          262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES  341 (840)
Q Consensus       262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~  341 (840)
                      ++|++++|.+++.+|..+..++ |++|++++ +.+.+..|..+..+++|+.|++++|.+.+.++.               
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------  239 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSR-NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---------------  239 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCC-CSEEECCS-SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---------------
T ss_pred             cEEECcCCeeeccCChHHhCCc-ccEEECcC-CcccCcCCHHHhcCCCCCEEECCCCceeeecCc---------------
Confidence            7777777766666666666665 66666666 455556666666666666666666555443322               


Q ss_pred             EEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcc
Q 003200          342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ  421 (840)
Q Consensus       342 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  421 (840)
                                     +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..  ..+++|+.+++++|+
T Consensus       240 ---------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          240 ---------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ---------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             ---------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence                           334455666666666665555556666666666666666666555542  555666666666665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-38  Score=356.08  Aligned_cols=374  Identities=20%  Similarity=0.210  Sum_probs=250.4

Q ss_pred             CCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEe
Q 003200          361 RNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALG  440 (840)
Q Consensus       361 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  440 (840)
                      ++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...|.++++|++|++++|.++...+..+..+.+|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            56777777777777766777777777777777777776666655677777777777777766654444444444444444


Q ss_pred             cccccCCCCCCc--cccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcC
Q 003200          441 LHNCYVGSRFPQ--WLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNM  518 (840)
Q Consensus       441 l~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l  518 (840)
                      +++|.+.+..+.  .+..+++|++|++++|++++..+..++..+++|++|++++|.+.+..+                  
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------  171 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE------------------  171 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT------------------
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh------------------
Confidence            444444432222  245555555555555555555444433344444444444433332211                  


Q ss_pred             CCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccc--------cCCCCcCEEEccCCc
Q 003200          519 SGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW--------MSYQNLKVLKLSNNK  590 (840)
Q Consensus       519 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~  590 (840)
                                                ..+.. + ...+++.|++++|.+.+..+..+        ..+++|++|++++|+
T Consensus       172 --------------------------~~l~~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  223 (455)
T 3v47_A          172 --------------------------EDLLN-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG  223 (455)
T ss_dssp             --------------------------TTSGG-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred             --------------------------hhhhc-c-ccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence                                      11110 0 01456667777776665433322        234556666666666


Q ss_pred             CCCCCCcccCCC---CcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhh-hccCCccEEEccCCcccc
Q 003200          591 FSGNLPNSLGSI---TSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFG-ERFSRMLVLILRSNQFHG  666 (840)
Q Consensus       591 l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~~l~~L~~L~l~~n~l~~  666 (840)
                      +++..|..+...   ++|+.|++++|.+.+...              ..+.+.+..+..+. -..++|+.|++++|.+++
T Consensus       224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             ccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccc
Confidence            655444443322   555666666555442211              11111111111111 124689999999999999


Q ss_pred             cCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCC
Q 003200          667 PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQ  746 (840)
Q Consensus       667 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  746 (840)
                      ..|..+..+++|+.|++++|++++..|..+.++++|                   +.|++++|++++..|..++++++|+
T Consensus       290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL-------------------LKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------CEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             cchhhcccCCCCCEEECCCCcccccChhHhcCcccC-------------------CEEECCCCccCCcChhHhcCcccCC
Confidence            999999999999999999999998888888888777                   9999999999988899999999999


Q ss_pred             eEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCCCcC
Q 003200          747 SINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQL  813 (840)
Q Consensus       747 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  813 (840)
                      +|+|++|++++..|..|+.+++|++|++++|++++..+..+..+++|++|++++|++++.+|....+
T Consensus       351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            9999999999998999999999999999999999766677899999999999999999999965443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=8.5e-39  Score=354.27  Aligned_cols=389  Identities=21%  Similarity=0.283  Sum_probs=206.2

Q ss_pred             CCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEc
Q 003200          338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRV  417 (840)
Q Consensus       338 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  417 (840)
                      .|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+.+++.+|..            .++++|++
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~L~l   78 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHELEL   78 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSEEEC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCEEEe
Confidence            566666666666 56666677777777777777777777777666666542222221110            12333333


Q ss_pred             cCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCccccc
Q 003200          418 GGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHG  497 (840)
Q Consensus       418 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  497 (840)
                      ++|.++....    .+++|+.|++++|.+.+ +|..   .++|++|++++|+++++..     ..++|++|++++|.+++
T Consensus        79 ~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l~~  145 (454)
T 1jl5_A           79 NNLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLEK  145 (454)
T ss_dssp             TTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCCSS
T ss_pred             cCCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-----CCCCCCEEECcCCCCCC
Confidence            3333322111    11334444444444443 2221   2556666666666655322     12466666666666665


Q ss_pred             ccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccC
Q 003200          498 KISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMS  577 (840)
Q Consensus       498 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  577 (840)
                       +|.+...++|++|++++|++++ +|..+++|++|++++|.+.+ +|     .+..+++|++|++++|.+++ +|..   
T Consensus       146 -lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-----~~~~l~~L~~L~l~~N~l~~-l~~~---  213 (454)
T 1jl5_A          146 -LPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-----ELQNLPFLTAIYADNNSLKK-LPDL---  213 (454)
T ss_dssp             -CCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred             -CcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-----cccCCCCCCEEECCCCcCCc-CCCC---
Confidence             3455555666677777766665 45555677777777777766 22     14556777777777777774 3332   


Q ss_pred             CCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEE
Q 003200          578 YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVL  657 (840)
Q Consensus       578 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L  657 (840)
                      .++|++|++++|+++ .+|. ++.+++|++|++++|++++ +|..   +++|++|++++|++++ +|..    .++|+.|
T Consensus       214 ~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~----~~~L~~L  282 (454)
T 1jl5_A          214 PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL----PQSLTFL  282 (454)
T ss_dssp             CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC----CTTCCEE
T ss_pred             cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc----cCcCCEE
Confidence            246777777777777 4553 7777777777777777764 4432   3677777777777764 5542    3677777


Q ss_pred             EccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcc
Q 003200          658 ILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS  737 (840)
Q Consensus       658 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~  737 (840)
                      ++++|++++.. ..   .++|+.|++++|++++ ++.    +                  +++|+.|++++|++++ +|.
T Consensus       283 ~ls~N~l~~l~-~~---~~~L~~L~l~~N~l~~-i~~----~------------------~~~L~~L~Ls~N~l~~-lp~  334 (454)
T 1jl5_A          283 DVSENIFSGLS-EL---PPNLYYLNASSNEIRS-LCD----L------------------PPSLEELNVSNNKLIE-LPA  334 (454)
T ss_dssp             ECCSSCCSEES-CC---CTTCCEEECCSSCCSE-ECC----C------------------CTTCCEEECCSSCCSC-CCC
T ss_pred             ECcCCccCccc-Cc---CCcCCEEECcCCcCCc-ccC----C------------------cCcCCEEECCCCcccc-ccc
Confidence            77777777521 11   2567777777777763 221    1                  1233777777777775 554


Q ss_pred             cccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc--cCCccccCC-------------CCCCeEeccCCc
Q 003200          738 EVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG--EIPQSMSSL-------------TFLNHLNLSNNN  802 (840)
Q Consensus       738 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l-------------~~L~~L~ls~N~  802 (840)
                      .   +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|.++..+             ++|++|++++|+
T Consensus       335 ~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          335 L---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             c---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            3   467777777777777 4665   36777777777777777  677777666             788899999999


Q ss_pred             ccc--cCCCC
Q 003200          803 LTG--KIPLS  810 (840)
Q Consensus       803 l~g--~ip~~  810 (840)
                      ++|  .||..
T Consensus       408 l~~~~~iP~s  417 (454)
T 1jl5_A          408 LREFPDIPES  417 (454)
T ss_dssp             ----------
T ss_pred             CCccccchhh
Confidence            887  77764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.1e-38  Score=351.05  Aligned_cols=422  Identities=21%  Similarity=0.278  Sum_probs=200.4

Q ss_pred             CCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEE
Q 003200          234 LTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSV  313 (840)
Q Consensus       234 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L  313 (840)
                      .+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+++|+.+++..|.            ..++++|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~~~l~~L   76 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------DRQAHEL   76 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------HHTCSEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------ccCCCEE
Confidence            46777777777777 6777777777777777777777777777777777777666666531            0234444


Q ss_pred             EcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEcc
Q 003200          314 NLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY  393 (840)
Q Consensus       314 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  393 (840)
                      ++++|.++                             + +|..   .++|++|++++|.+++ +|..   +++|++|+++
T Consensus        77 ~l~~~~l~-----------------------------~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~  119 (454)
T 1jl5_A           77 ELNNLGLS-----------------------------S-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVD  119 (454)
T ss_dssp             ECTTSCCS-----------------------------C-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred             EecCCccc-----------------------------c-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECC
Confidence            44444443                             3 1111   2345555555555554 2321   2445555555


Q ss_pred             CCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCC
Q 003200          394 DNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDI  473 (840)
Q Consensus       394 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~  473 (840)
                      +|.+.+ ++..    .++|++|++++|.++                        + +| .+..+++|++|++++|+++++
T Consensus       120 ~n~l~~-l~~~----~~~L~~L~L~~n~l~------------------------~-lp-~~~~l~~L~~L~l~~N~l~~l  168 (454)
T 1jl5_A          120 NNNLKA-LSDL----PPLLEYLGVSNNQLE------------------------K-LP-ELQNSSFLKIIDVDNNSLKKL  168 (454)
T ss_dssp             SSCCSC-CCSC----CTTCCEEECCSSCCS------------------------S-CC-CCTTCTTCCEEECCSSCCSCC
T ss_pred             CCccCc-ccCC----CCCCCEEECcCCCCC------------------------C-Cc-ccCCCCCCCEEECCCCcCccc
Confidence            555442 1110    023333333333332                        1 22 244445555555555555542


Q ss_pred             cchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCC
Q 003200          474 FPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNE  553 (840)
Q Consensus       474 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  553 (840)
                      ..     ..++|++|++++|.+++ ++.+...++|+.|++++|.+++ +|..+++|++|++++|.+. .+|.     +..
T Consensus       169 p~-----~~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-----~~~  235 (454)
T 1jl5_A          169 PD-----LPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-----LQN  235 (454)
T ss_dssp             CC-----CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-----CTT
T ss_pred             CC-----CcccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cccc-----cCC
Confidence            21     12356666666666555 3345555666666666666665 3444567777777777776 3332     345


Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      +++|++|++++|++++ +|..   .++|++|++++|++++ +|..   .++|++|++++|++++. |..   .++|+.|+
T Consensus       236 l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~  303 (454)
T 1jl5_A          236 LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLN  303 (454)
T ss_dssp             CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEE
T ss_pred             CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEE
Confidence            7778888888888774 4432   3678888888888775 4432   36778888888877752 211   15777888


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      +++|++++ ++.    ..++|++|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|           
T Consensus       304 l~~N~l~~-i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L-----------  359 (454)
T 1jl5_A          304 ASSNEIRS-LCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNL-----------  359 (454)
T ss_dssp             CCSSCCSE-ECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTC-----------
T ss_pred             CcCCcCCc-ccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhc-----------
Confidence            88887764 222    12477777887777775 4443   467777778777777 4554   23333           


Q ss_pred             ccccCCcceEEeCCCCcccc--cCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc--cCCccccC
Q 003200          714 YREILPLVSLLDISRNNFSG--EILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG--EIPQSMSS  789 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~  789 (840)
                              +.|++++|++++  .+|..++.        ++.|.+.+.+|..   +++|++||+++|++++  .+|.+   
T Consensus       360 --------~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s---  417 (454)
T 1jl5_A          360 --------KQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES---  417 (454)
T ss_dssp             --------CEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------------------------
T ss_pred             --------cEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh---
Confidence                    777777777776  55654432        2346666667663   4899999999999997  66654   


Q ss_pred             CCCCCeEeccCCcccccCCCC
Q 003200          790 LTFLNHLNLSNNNLTGKIPLS  810 (840)
Q Consensus       790 l~~L~~L~ls~N~l~g~ip~~  810 (840)
                         ++.|.+.+|.+.+.+|..
T Consensus       418 ---l~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          418 ---VEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             ---------------------
T ss_pred             ---HhheeCcCcccCCccccC
Confidence               566778999999988754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-36  Score=340.38  Aligned_cols=386  Identities=17%  Similarity=0.180  Sum_probs=265.7

Q ss_pred             CCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccC-cccccCCCCCcEEEc
Q 003200          237 LKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRI-PRSMANFCNLKSVNL  315 (840)
Q Consensus       237 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L~l  315 (840)
                      -+.++.+++.++ .+|. +  .++|++|++++|.+++..|..+.++++|++|++++ +.+.+.+ +..+.++++|++|++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCC-CSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcC-CcccceECcccccccccCCEEeC
Confidence            356788888776 5555 2  26799999999999887788888899999999888 4555444 455677776666666


Q ss_pred             CCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCccccccccc--ccCCCCCCEEEcc
Q 003200          316 RGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPES--FGQLSTLRELQIY  393 (840)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~  393 (840)
                      ++|.+.+..|.                             .++.+++|++|++++|.+++..+..  +.++++|++|+++
T Consensus        87 s~n~l~~~~~~-----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~  137 (455)
T 3v47_A           87 DYNQFLQLETG-----------------------------AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR  137 (455)
T ss_dssp             TTCTTCEECTT-----------------------------TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC
T ss_pred             CCCccCccChh-----------------------------hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECC
Confidence            66665554444                             4444455555555555554433222  4445555555555


Q ss_pred             CCccccccChhhhccCCCCCEEEccCcccceeccCCCCCc--cCccEEecccccCCCCCCcc--------ccCCCCCcEE
Q 003200          394 DNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPP--FQLVALGLHNCYVGSRFPQW--------LHSQKHLQYL  463 (840)
Q Consensus       394 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L  463 (840)
                      +|.+.+..+...+.++++|++|++++|.+.......+...  .+++.+++++|.+....+.+        +..+++|++|
T Consensus       138 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L  217 (455)
T 3v47_A          138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL  217 (455)
T ss_dssp             SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEE
T ss_pred             CCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeE
Confidence            5555433333334555555555555555544433333322  34555555555555444333        2355778888


Q ss_pred             EccCCCCCCCcchHHHhcc--CCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcc
Q 003200          464 NLLNSRISDIFPIRFLKSA--SQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSG  541 (840)
Q Consensus       464 ~Ls~n~i~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~  541 (840)
                      ++++|++++..+..+....  ++++.+++++|...+.....                                  +.+.+
T Consensus       218 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------------------------~~~~~  263 (455)
T 3v47_A          218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH----------------------------------TNFKD  263 (455)
T ss_dssp             ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC----------------------------------CSSCC
T ss_pred             ecCCCcccccchhhhhccccccceeeEeeccccccccccch----------------------------------hhhcc
Confidence            8888888877776664432  56777777666554321111                                  11111


Q ss_pred             cCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCc
Q 003200          542 SISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPI  621 (840)
Q Consensus       542 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  621 (840)
                      ..+..+.  -...++|+.|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..|.
T Consensus       264 ~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  341 (455)
T 3v47_A          264 PDNFTFK--GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR  341 (455)
T ss_dssp             CCTTTTG--GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred             Ccccccc--cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence            1110000  01236899999999999988899999999999999999999988888999999999999999999888888


Q ss_pred             ccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCC
Q 003200          622 SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIP  693 (840)
Q Consensus       622 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  693 (840)
                      .+.++++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus       342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          342 MFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999999999988888887 78999999999999998777788899999999999999998777

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.2e-36  Score=316.85  Aligned_cols=259  Identities=30%  Similarity=0.569  Sum_probs=244.3

Q ss_pred             CcccEEeccCCcCcc--ccCccccCCCCcCEEEccC-CcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcE
Q 003200          555 KSLEGLKLTDNYLQG--EIPDCWMSYQNLKVLKLSN-NKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALAS  631 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  631 (840)
                      .+++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..|+.+++|++|++++|++++.+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            578999999999998  8999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCcc-ccceeecccccccccCCccccccccCcccccccC
Q 003200          632 LDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLA-FLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG  710 (840)
Q Consensus       632 L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  710 (840)
                      |++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..++ |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999999999987 799999999999999999999999998 999999999999999999888775 6        


Q ss_pred             cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200          711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL  790 (840)
Q Consensus       711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  790 (840)
                                 +.|++++|++++.+|..+..+++|+.|++++|++++.+|. +..+++|++|++++|++++.+|..+..+
T Consensus       200 -----------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  267 (313)
T 1ogq_A          200 -----------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             -----------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             -----------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence                       9999999999999999999999999999999999977776 8899999999999999999999999999


Q ss_pred             CCCCeEeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCCCCCCCCC
Q 003200          791 TFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGAPLPKNCT  836 (840)
Q Consensus       791 ~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~~~~~~c~  836 (840)
                      ++|++|++++|+++|.+|..+++.++....+.|| .+||.|+. +|+
T Consensus       268 ~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C~  313 (313)
T 1ogq_A          268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             TTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred             cCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CCC
Confidence            9999999999999999999989999999999999 89999987 784

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.7e-35  Score=323.33  Aligned_cols=364  Identities=20%  Similarity=0.216  Sum_probs=238.8

Q ss_pred             ccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccC
Q 003200          349 IYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKH  428 (840)
Q Consensus       349 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  428 (840)
                      ..+..+..++.+++|++|++++|.+++. | .++.+++|++|++++|.+.+ ++   +..+++|++|++++|.++..   
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~---  100 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL---  100 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---
T ss_pred             cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---
Confidence            3344455677788999999999988875 4 68888999999999998875 33   77888888888888887753   


Q ss_pred             CCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcc
Q 003200          429 DWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQL  508 (840)
Q Consensus       429 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L  508 (840)
                      .+..+++|++|++++|.+++. +  +..+++|++|++++|++++..    ...+++|++|++++|...+.+ .+.     
T Consensus       101 ~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~-~~~-----  167 (457)
T 3bz5_A          101 DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL-DVT-----  167 (457)
T ss_dssp             CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC-CCT-----
T ss_pred             ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc-ccc-----
Confidence            244555555555555555542 1  455555555555555555531    233444444444444332222 122     


Q ss_pred             cEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccC
Q 003200          509 LFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSN  588 (840)
Q Consensus       509 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  588 (840)
                                      .+++|++|++++|++++. +      +..+++|+.|++++|.+++.   .+..+++|++|++++
T Consensus       168 ----------------~l~~L~~L~ls~n~l~~l-~------l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~  221 (457)
T 3bz5_A          168 ----------------PQTQLTTLDCSFNKITEL-D------VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSS  221 (457)
T ss_dssp             ----------------TCTTCCEEECCSSCCCCC-C------CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCS
T ss_pred             ----------------cCCcCCEEECCCCcccee-c------cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcC
Confidence                            245555666666655552 1      33456677777777776654   256667777777777


Q ss_pred             CcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccC
Q 003200          589 NKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPL  668 (840)
Q Consensus       589 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~  668 (840)
                      |++++ +|  ++.+++|++|++++|++++..   +..+++|+.|++++|               +|+.|++++|.+.+.+
T Consensus       222 N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          222 NKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYF  280 (457)
T ss_dssp             SCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEE
T ss_pred             Ccccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCcc
Confidence            77765 34  666677777777777776543   334556666666554               3445666666666655


Q ss_pred             CccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeE
Q 003200          669 PKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSI  748 (840)
Q Consensus       669 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  748 (840)
                      |  +..+++|+.|++++|+..+.+|....+++.+.           ....++|+.|++++|++++.   .++++++|+.|
T Consensus       281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~-----------l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L  344 (457)
T 3bz5_A          281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD-----------LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSL  344 (457)
T ss_dssp             E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC-----------CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEE
T ss_pred             c--ccccccCCEEECCCCcccceeccCCCcceEec-----------hhhcccCCEEECCCCccccc---ccccCCcCcEE
Confidence            5  35667777777777777777765444443331           12346779999999999973   38899999999


Q ss_pred             eCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCC
Q 003200          749 NFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS  810 (840)
Q Consensus       749 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  810 (840)
                      ++++|++++        ++.|+.|++++|++.|.     ..+..|..+++++|+++|.||..
T Consensus       345 ~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          345 SCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             ECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            999999985        24677788999999876     34566888899999999999864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.7e-35  Score=325.38  Aligned_cols=366  Identities=21%  Similarity=0.204  Sum_probs=269.0

Q ss_pred             cccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccc
Q 003200          321 SQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGT  400 (840)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  400 (840)
                      .+..+..+..++     +|++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+.+ 
T Consensus        31 ~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-   99 (457)
T 3bz5_A           31 QATDTISEEQLA-----TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-   99 (457)
T ss_dssp             CTTSEEEHHHHT-----TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-
T ss_pred             CcccccChhHcC-----CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-
Confidence            333344455566     999999999999985 4 689999999999999999986 3  8899999999999999985 


Q ss_pred             cChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHh
Q 003200          401 LSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLK  480 (840)
Q Consensus       401 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  480 (840)
                      ++   +.++++|++|++++|+++..   .+..+++|+.|++++|.+++.   .+..+++|++|++++|+..+..+   +.
T Consensus       100 ~~---~~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~  167 (457)
T 3bz5_A          100 LD---VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VT  167 (457)
T ss_dssp             CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CT
T ss_pred             ee---cCCCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cc
Confidence            33   88999999999999999874   377889999999999999875   27889999999999996555443   35


Q ss_pred             ccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEE
Q 003200          481 SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGL  560 (840)
Q Consensus       481 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L  560 (840)
                      .+++|++|++++|++++. + +...++|+.|++++|.+++.....+++|++|++++|++++ +|      +..+++|+.|
T Consensus       168 ~l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip------~~~l~~L~~L  238 (457)
T 3bz5_A          168 PQTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID------VTPLTQLTYF  238 (457)
T ss_dssp             TCTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC------CTTCTTCSEE
T ss_pred             cCCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC------ccccCCCCEE
Confidence            688999999999999874 3 5556777777777777766533345566666666666655 22      2335566666


Q ss_pred             eccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCccc
Q 003200          561 KLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFV  640 (840)
Q Consensus       561 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  640 (840)
                      ++++|++++..   +..+++|+.|++++|              +|+.|++++|.+.+.+|  +..+++|+.|++++|+..
T Consensus       239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          239 DCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             ECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred             EeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence            66666665432   234455555555443              34556666776666655  456777888888887777


Q ss_pred             ccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCc
Q 003200          641 GNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPL  720 (840)
Q Consensus       641 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~  720 (840)
                      +.+|.    ..++|+.|++++             +++|+.|++++|++++ ++  +.++++|                  
T Consensus       300 ~~l~~----~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~-l~--l~~l~~L------------------  341 (457)
T 3bz5_A          300 YLLDC----QAAGITELDLSQ-------------NPKLVYLYLNNTELTE-LD--VSHNTKL------------------  341 (457)
T ss_dssp             CEEEC----TTCCCSCCCCTT-------------CTTCCEEECTTCCCSC-CC--CTTCTTC------------------
T ss_pred             ceecc----CCCcceEechhh-------------cccCCEEECCCCcccc-cc--cccCCcC------------------
Confidence            66664    234555554443             3678888999998886 33  6666655                  


Q ss_pred             ceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccC
Q 003200          721 VSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSS  789 (840)
Q Consensus       721 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  789 (840)
                       +.|++++|++++        ++.|+.|++++|++.|.     +++..|+.+++++|+++|.+|..+..
T Consensus       342 -~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          342 -KSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             -SEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             -cEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence             888999998885        35677778888888875     35677888889999999888876543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.2e-34  Score=317.26  Aligned_cols=346  Identities=28%  Similarity=0.376  Sum_probs=178.8

Q ss_pred             CCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccE
Q 003200          359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVA  438 (840)
Q Consensus       359 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  438 (840)
                      .++++++|+++++.+... | .+..+++|++|++++|.+.+ ++.  +.++++|++|++++|.+.....           
T Consensus        44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-----------  107 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP-----------  107 (466)
T ss_dssp             HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-----------
T ss_pred             HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh-----------
Confidence            356888999998888754 3 47788899999999998874 333  7788888888888877664322           


Q ss_pred             EecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcC
Q 003200          439 LGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNM  518 (840)
Q Consensus       439 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l  518 (840)
                                     +..+++|++|++++|++++..+   +..+++|++|++++|.+.+. +.+...++|+.|++. +.+
T Consensus       108 ---------------~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~-~~~  167 (466)
T 1o6v_A          108 ---------------LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFG-NQV  167 (466)
T ss_dssp             ---------------GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEE-ESC
T ss_pred             ---------------hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecC-Ccc
Confidence                           4555666666666666655543   34556666666666665542 234444555555543 222


Q ss_pred             CCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcc
Q 003200          519 SGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNS  598 (840)
Q Consensus       519 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  598 (840)
                      .+..+                           +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..|  
T Consensus       168 ~~~~~---------------------------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  216 (466)
T 1o6v_A          168 TDLKP---------------------------LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--  216 (466)
T ss_dssp             CCCGG---------------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             cCchh---------------------------hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--
Confidence            21111                           22234444444444444322  124444444444444444443322  


Q ss_pred             cCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCcccc
Q 003200          599 LGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFL  678 (840)
Q Consensus       599 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  678 (840)
                      ++.+++|+.|++++|++++.  ..+..+++|+.|++++|.+.+..|  +. .+++|+.|++++|.+++..+  +..+++|
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L  289 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTAL  289 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCcc
Confidence            33444444444444444421  234444445555555554443322  22 34445555555555443322  4445555


Q ss_pred             ceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200          679 QILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR  758 (840)
Q Consensus       679 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  758 (840)
                      +.|++++|++.+..|  +..+++|                   +.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       290 ~~L~L~~n~l~~~~~--~~~l~~L-------------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          290 TNLELNENQLEDISP--ISNLKNL-------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTTC-------------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CeEEcCCCcccCchh--hcCCCCC-------------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            555555555543222  2222222                   555555555554333  44555555555555555532


Q ss_pred             CCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200          759 IPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       759 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  805 (840)
                        ..++.+++|+.|++++|++++..|  +..+++|++|++++|++++
T Consensus       347 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          347 --SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             --hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence              234555555555555555554444  4455555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.6e-33  Score=312.48  Aligned_cols=344  Identities=25%  Similarity=0.345  Sum_probs=197.3

Q ss_pred             CEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCC
Q 003200           76 HILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLS  155 (840)
Q Consensus        76 ~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~  155 (840)
                      +++.|++.++       .+ ..++ .+..+++|++||+++|.+.+  +|. ++.+++|++|++++|.+.+..|  +++++
T Consensus        47 ~l~~L~l~~~-------~i-~~l~-~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~  112 (466)
T 1o6v_A           47 QVTTLQADRL-------GI-KSID-GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLT  112 (466)
T ss_dssp             TCCEEECCSS-------CC-CCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred             cccEEecCCC-------CC-ccCc-chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCC
Confidence            5677777664       22 2233 36667777777777777774  343 6777777777777777765443  77777


Q ss_pred             CCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCC
Q 003200          156 DLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLT  235 (840)
Q Consensus       156 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~  235 (840)
                      +|++|++++|.+....+  +.++++|++|++++|.+...+    .+..+++|++|+++ +.+...        ..+..++
T Consensus       113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~-~~~~~~--------~~~~~l~  177 (466)
T 1o6v_A          113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFG-NQVTDL--------KPLANLT  177 (466)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE-ESCCCC--------GGGTTCT
T ss_pred             CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh----hhccCCcccEeecC-CcccCc--------hhhccCC
Confidence            77777777777665433  677777777777777776643    35667777777775 333322        2366667


Q ss_pred             CCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEc
Q 003200          236 SLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNL  315 (840)
Q Consensus       236 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l  315 (840)
                      +|++|++++|.+.+.  ..+..+++|++|++++|.+++..+  ++.+++|++|++++ +.+.+.  ..+..+++|+.|++
T Consensus       178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~--~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG-NQLKDI--GTLASLTNLTDLDL  250 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCS-SCCCCC--GGGGGCTTCSEEEC
T ss_pred             CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCC-CCcccc--hhhhcCCCCCEEEC
Confidence            777777777766543  236666777777777776665444  55666666666666 333321  23445555555555


Q ss_pred             CCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCC
Q 003200          316 RGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDN  395 (840)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  395 (840)
                      ++|.+.+..+                               +..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus       251 ~~n~l~~~~~-------------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          251 ANNQISNLAP-------------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN  297 (466)
T ss_dssp             CSSCCCCCGG-------------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             CCCccccchh-------------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence            5555444332                               3444445555555554444322  444445555555555


Q ss_pred             ccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcc
Q 003200          396 KLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFP  475 (840)
Q Consensus       396 ~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  475 (840)
                      .+.+. +.  +..+++|+.|++++|++....+  +..+++|+.|++++|.+.+.  ..+..+++|++|++++|++++..|
T Consensus       298 ~l~~~-~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          298 QLEDI-SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CCSCC-GG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             cccCc-hh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            44422 11  3444444444444444443222  22333444444444444332  345666777777777777766655


Q ss_pred             hHHHhccCCccEEEccCcccccc
Q 003200          476 IRFLKSASQLKFLDVGLNQFHGK  498 (840)
Q Consensus       476 ~~~~~~l~~L~~L~l~~n~l~~~  498 (840)
                         ...+++|+.|++++|.+++.
T Consensus       371 ---~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          371 ---LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             ---GTTCTTCCEEECCCEEEECC
T ss_pred             ---hhcCCCCCEEeccCCcccCC
Confidence               35566677777777666653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=324.78  Aligned_cols=321  Identities=18%  Similarity=0.192  Sum_probs=194.1

Q ss_pred             CEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEeccc
Q 003200          364 VTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHN  443 (840)
Q Consensus       364 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  443 (840)
                      +.++.+++.++.+ |..+.  ++++.|++++|.+.+ ++...|.++++|++|++++|.++..                  
T Consensus        14 ~~v~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~------------------   71 (477)
T 2id5_A           14 RAVLCHRKRFVAV-PEGIP--TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAV------------------   71 (477)
T ss_dssp             TEEECCSCCCSSC-CSCCC--TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEE------------------
T ss_pred             CEEEeCCCCcCcC-CCCCC--CCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEe------------------
Confidence            4677777776643 44332  467777777777763 3333566666666666666655543                  


Q ss_pred             ccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCC
Q 003200          444 CYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLP  523 (840)
Q Consensus       444 ~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~  523 (840)
                            .|..|..+++|++|++++|+++++.+..| ..+++|+                                     
T Consensus        72 ------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~-------------------------------------  107 (477)
T 2id5_A           72 ------EPGAFNNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLT-------------------------------------  107 (477)
T ss_dssp             ------CTTTTTTCTTCCEEECCSSCCCSCCTTSS-TTCTTCC-------------------------------------
T ss_pred             ------ChhhhhCCccCCEEECCCCcCCccCcccc-cCCCCCC-------------------------------------
Confidence                  33344445555555555555444332211 1122222                                     


Q ss_pred             CCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCC
Q 003200          524 LVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSIT  603 (840)
Q Consensus       524 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  603 (840)
                             +|++++|.+.+..+.    .+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..++
T Consensus       108 -------~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~  176 (477)
T 2id5_A          108 -------KLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH  176 (477)
T ss_dssp             -------EEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT
T ss_pred             -------EEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC
Confidence                   222222222222221    123356777777777777766677777777777777777777765555677777


Q ss_pred             cccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeec
Q 003200          604 SLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDL  683 (840)
Q Consensus       604 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L  683 (840)
                      +|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.... ...+|+.|++++|++++..+..+..+++|+.|++
T Consensus       177 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  255 (477)
T 2id5_A          177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL  255 (477)
T ss_dssp             TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence            777777777777766666777777777777777776666666555 3446677777777666544455666666666666


Q ss_pred             ccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcch
Q 003200          684 ADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESI  763 (840)
Q Consensus       684 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l  763 (840)
                      ++|++++..+..+..+++|                   +.|+|++|++++..|..+.++++|+.|+|++|++++..+..|
T Consensus       256 s~n~l~~~~~~~~~~l~~L-------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  316 (477)
T 2id5_A          256 SYNPISTIEGSMLHELLRL-------------------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF  316 (477)
T ss_dssp             CSSCCCEECTTSCTTCTTC-------------------CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred             CCCcCCccChhhccccccC-------------------CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence            6666665555555555544                   666666666666666666666666666666666665555556


Q ss_pred             hccCCCCeEeCCCCcccc
Q 003200          764 GTMRALESVDFSVNQLSG  781 (840)
Q Consensus       764 ~~l~~L~~L~Ls~N~l~~  781 (840)
                      ..+++|++|++++|++..
T Consensus       317 ~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          317 HSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             SCGGGCCEEECCSSCEEC
T ss_pred             CCCcccCEEEccCCCccC
Confidence            666666666666666653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=314.80  Aligned_cols=312  Identities=22%  Similarity=0.236  Sum_probs=276.3

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCccccc
Q 003200           97 KVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLS  176 (840)
Q Consensus        97 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~  176 (840)
                      .+|..+.  +++++|||++|.++++ .|..+..+++|++|+|++|.+++..|.+|.++++|++|++++|.+.......|.
T Consensus        25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  101 (477)
T 2id5_A           25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT  101 (477)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred             cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence            3444443  5899999999999975 567899999999999999999998899999999999999999999988888899


Q ss_pred             CCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCccccc
Q 003200          177 GLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLY  256 (840)
Q Consensus       177 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  256 (840)
                      ++++|++|++++|++....  +..+..+++|++|++++|.+....+      ..|..+++|++|++++|.+++..+..+.
T Consensus       102 ~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~l~  173 (477)
T 2id5_A          102 GLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISH------RAFSGLNSLEQLTLEKCNLTSIPTEALS  173 (477)
T ss_dssp             TCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECT------TSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred             CCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCccceeCh------hhccCCCCCCEEECCCCcCcccChhHhc
Confidence            9999999999999998753  3567889999999999999988876      7899999999999999999987778899


Q ss_pred             CCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCC
Q 003200          257 KFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVS  336 (840)
Q Consensus       257 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  336 (840)
                      .+++|++|++++|.+.+..+..+..+++|++|++++ +...+.++.......+|+.|++++|.+.+..+..+..++    
T Consensus       174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~----  248 (477)
T 2id5_A          174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH-WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV----  248 (477)
T ss_dssp             TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC-CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT----
T ss_pred             ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC-CccccccCcccccCccccEEECcCCcccccCHHHhcCcc----
Confidence            999999999999999988888899999999999999 456666777766777999999999999977767777776    


Q ss_pred             CCCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEE
Q 003200          337 NGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFR  416 (840)
Q Consensus       337 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~  416 (840)
                       +|+.|++++|.+.+..+..+..+++|++|++++|++.+..|..|.++++|++|++++|.++ .++...|..+++|+.|+
T Consensus       249 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~  326 (477)
T 2id5_A          249 -YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLI  326 (477)
T ss_dssp             -TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEE
T ss_pred             -ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEE
Confidence             9999999999999888888999999999999999999998999999999999999999997 56666889999999999


Q ss_pred             ccCcccceec
Q 003200          417 VGGNQLTFEV  426 (840)
Q Consensus       417 L~~n~l~~~~  426 (840)
                      +++|++.+..
T Consensus       327 l~~N~l~c~c  336 (477)
T 2id5_A          327 LDSNPLACDC  336 (477)
T ss_dssp             CCSSCEECSG
T ss_pred             ccCCCccCcc
Confidence            9999987543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-32  Score=300.28  Aligned_cols=238  Identities=20%  Similarity=0.224  Sum_probs=181.8

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      +++|++|++++|.+++..|..+..+++|++|++++|++++.   .+..+++|+.|++++|.+++     +...++|++|+
T Consensus       140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~  211 (390)
T 3o6n_A          140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELD  211 (390)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEE
T ss_pred             CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEE
Confidence            45677777777777666666677777777777777777754   24556777777777777763     23345788888


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      +++|.+... |..   ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|..+..+++|           
T Consensus       212 l~~n~l~~~-~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------  274 (390)
T 3o6n_A          212 ASHNSINVV-RGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-----------  274 (390)
T ss_dssp             CCSSCCCEE-ECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------
T ss_pred             CCCCeeeec-ccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-----------
Confidence            888887643 443   346788888888888764  567888899999999999988778888877776           


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL  793 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  793 (840)
                              +.|++++|++++ +|..+..+++|++|++++|+++ .+|..++.+++|++|++++|++++ +|  +..+++|
T Consensus       275 --------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L  341 (390)
T 3o6n_A          275 --------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTL  341 (390)
T ss_dssp             --------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCC
T ss_pred             --------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccC
Confidence                    889999999985 5667788999999999999999 678889999999999999999985 44  7788999


Q ss_pred             CeEeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCCC
Q 003200          794 NHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGAP  830 (840)
Q Consensus       794 ~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~~  830 (840)
                      ++|++++|++.+.-. ...+..+....+.++ ..|+.+
T Consensus       342 ~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          342 KNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             SEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred             CEEEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence            999999999987422 233555666677788 788754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.2e-33  Score=303.35  Aligned_cols=211  Identities=20%  Similarity=0.188  Sum_probs=137.8

Q ss_pred             CCCCCCCCCCCcc-ccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccc-cccC
Q 003200           52 RLASWTGDGDCCT-WAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPR-FIGS  129 (840)
Q Consensus        52 ~l~~W~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~-~l~~  129 (840)
                      .+++|..+.+||. |.++.|....     +.+...       .........-..++++++|+++++.+..  +|. .+..
T Consensus         2 ~~~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~-------~~~~~~~~~~~~l~~l~~l~l~~~~l~~--l~~~~~~~   67 (390)
T 3o6n_A            2 NVKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQ-------TQDVYFGFEDITLNNQKIVTFKNSTMRK--LPAALLDS   67 (390)
T ss_dssp             -----CCEECBCC------EEEES-----CEECSS-------CCCCEESCSSGGGCCCSEEEEESCEESE--ECTHHHHH
T ss_pred             CcCCCCCccceehhhhhhccceee-----eeeecc-------cccccccccccccCCceEEEecCCchhh--CChhHhcc
Confidence            3678987788874 5555553111     111111       1111122223457899999999999884  555 4688


Q ss_pred             CCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCE
Q 003200          130 MRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLE  209 (840)
Q Consensus       130 l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~  209 (840)
                      +++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|.++++|++|++++|+++.++.  ..+..+++|++
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~  145 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTT  145 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH--HHhcCCCCCcE
Confidence            9999999999999998888899999999999999999988888888889999999998888876543  22456677777


Q ss_pred             EEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEe
Q 003200          210 LRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLD  289 (840)
Q Consensus       210 L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  289 (840)
                      |++++|.+.+.++      ..+..+++|++|++++|.+++.   .+..+++|++|++++|.+++     +...++|++|+
T Consensus       146 L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~  211 (390)
T 3o6n_A          146 LSMSNNNLERIED------DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELD  211 (390)
T ss_dssp             EECCSSCCCBCCT------TTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEE
T ss_pred             EECCCCccCccCh------hhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEE
Confidence            7777777666554      5566667777777777766643   24455666666666666553     12234556666


Q ss_pred             ccc
Q 003200          290 LSI  292 (840)
Q Consensus       290 L~~  292 (840)
                      +++
T Consensus       212 l~~  214 (390)
T 3o6n_A          212 ASH  214 (390)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.1e-32  Score=315.57  Aligned_cols=238  Identities=20%  Similarity=0.210  Sum_probs=192.3

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      +++|++|++++|.+++..|..|..+++|++|++++|.+++..   ++.+++|+.|++++|.+++     +...++|+.|+
T Consensus       146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~  217 (597)
T 3oja_B          146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELD  217 (597)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEE
T ss_pred             CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheee
Confidence            567777777777777777777888888888888888887642   4556778888888887763     33456788888


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      +++|.+... |..   ..++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..+..+++|           
T Consensus       218 ls~n~l~~~-~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----------  280 (597)
T 3oja_B          218 ASHNSINVV-RGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-----------  280 (597)
T ss_dssp             CCSSCCCEE-ECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------
T ss_pred             ccCCccccc-ccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-----------
Confidence            888888743 333   24688899999998886  3678889999999999999998888888887777           


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL  793 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  793 (840)
                              +.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..++.+++|++|+|++|++++. |  +..+++|
T Consensus       281 --------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L  347 (597)
T 3oja_B          281 --------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL  347 (597)
T ss_dssp             --------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred             --------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence                    899999999985 5777888999999999999999 7888899999999999999999854 3  6778899


Q ss_pred             CeEeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCCC
Q 003200          794 NHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGAP  830 (840)
Q Consensus       794 ~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~~  830 (840)
                      ++|++++|++++..+ ...+..+....+.++ ..|+.+
T Consensus       348 ~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          348 KNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             SEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred             CEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence            999999999988643 234666777788899 999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1e-31  Score=309.80  Aligned_cols=209  Identities=20%  Similarity=0.218  Sum_probs=135.4

Q ss_pred             CCCCCCCCCCCCcc----ccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccc-
Q 003200           51 NRLASWTGDGDCCT----WAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPR-  125 (840)
Q Consensus        51 ~~l~~W~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~-  125 (840)
                      ..+++|..+.+||.    |.++.|+.      .++-...       ..  .....-..+++++.|++++|.+..  +|. 
T Consensus         7 ~~l~~~~~~~~C~~~~~~~~c~~~~~------~i~~~~~-------~~--~~~~~~l~l~~l~~l~l~~~~l~~--lp~~   69 (597)
T 3oja_B            7 YNVKPRQPEYKCIDSNLQYDCVFYDV------HIDMQTQ-------DV--YFGFEDITLNNQKIVTFKNSTMRK--LPAA   69 (597)
T ss_dssp             ----CCCSEECCCCC--CCSEEECSC------EECSSCC-------CC--EESCSSGGGCCCSEEEESSCEESE--ECTH
T ss_pred             ccccCCCCCCcCcccCcCceeEecCc------eeccccc-------cc--ccCcccccCCCceEEEeeCCCCCC--cCHH
Confidence            35788987778874    66665541      1111110       11  111122347889999999999884  444 


Q ss_pred             cccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCC
Q 003200          126 FIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLP  205 (840)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~  205 (840)
                      .++.+++|++|+|++|.+++..|..|+.+++|++|++++|.+....+..|+++++|++|+|++|.++.++.  ..++.++
T Consensus        70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~  147 (597)
T 3oja_B           70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTP  147 (597)
T ss_dssp             HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCT
T ss_pred             HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH--HHhccCC
Confidence            56889999999999999998888899999999999999999988888888888888888888888876543  2235566


Q ss_pred             CCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCC
Q 003200          206 SLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSV  285 (840)
Q Consensus       206 ~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  285 (840)
                      +|++|++++|.+.+.++      ..+..+++|++|++++|.+++..   +..+++|++|++++|.+++     +...++|
T Consensus       148 ~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L  213 (597)
T 3oja_B          148 KLTTLSMSNNNLERIED------DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAV  213 (597)
T ss_dssp             TCCEEECCSSCCCBCCT------TTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTC
T ss_pred             CCCEEEeeCCcCCCCCh------hhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchh
Confidence            66666666666655544      45566666666666666655432   3344555666666555543     1223345


Q ss_pred             cEEeccc
Q 003200          286 SWLDLSI  292 (840)
Q Consensus       286 ~~L~L~~  292 (840)
                      +.|++++
T Consensus       214 ~~L~ls~  220 (597)
T 3oja_B          214 EELDASH  220 (597)
T ss_dssp             SEEECCS
T ss_pred             heeeccC
Confidence            5555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.98  E-value=8.6e-33  Score=293.17  Aligned_cols=272  Identities=20%  Similarity=0.231  Sum_probs=225.6

Q ss_pred             CcCCCcHHHHHHHHHhhhcCC-CCCCCCCCC----CCCCCCccccceecCC--------CCCCEEEEEcCCCCCCCCCcc
Q 003200           27 YHVGCLETERRALLRFKQDLQ-DPSNRLASW----TGDGDCCTWAGVACGN--------VTGHILELNLRNPSTSNPRSM   93 (840)
Q Consensus        27 ~~~~~~~~~~~~ll~~k~~~~-~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~   93 (840)
                      +...+..+|+.||++||+++. |+.+...+|    ....++|.|.|+.|+.        ...+|++|+|+++       .
T Consensus        20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n-------~   92 (328)
T 4fcg_A           20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-------P   92 (328)
T ss_dssp             C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS-------C
T ss_pred             eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC-------C
Confidence            345567789999999999984 776777889    4567899999999942        3468999999996       4


Q ss_pred             ccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcc
Q 003200           94 LVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVW  173 (840)
Q Consensus        94 ~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~  173 (840)
                      +. .+|+.++++++|++|+|++|.+.  .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++|.+....+.
T Consensus        93 l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~  168 (328)
T 4fcg_A           93 LP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE  168 (328)
T ss_dssp             CS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred             ch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence            43 78888999999999999999998  58999999999999999999998 7898999999999999999877666555


Q ss_pred             ccc---------CCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcC
Q 003200          174 WLS---------GLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDS  244 (840)
Q Consensus       174 ~~~---------~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~  244 (840)
                      .+.         ++++|++|++++|+++.++   ..+..+++|++|++++|.+++++       ..+..+++|++|++++
T Consensus       169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~N~l~~l~-------~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLP---ASIANLQNLKSLKIRNSPLSALG-------PAIHHLPKLEELDLRG  238 (328)
T ss_dssp             CSEEEC-CCCEEESTTCCEEEEEEECCCCCC---GGGGGCTTCCEEEEESSCCCCCC-------GGGGGCTTCCEEECTT
T ss_pred             hHhhccchhhhccCCCCCEEECcCCCcCcch---HhhcCCCCCCEEEccCCCCCcCc-------hhhccCCCCCEEECcC
Confidence            443         4899999999999888654   45677888888888888887654       5688888888888888


Q ss_pred             CCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcc
Q 003200          245 NHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHL  320 (840)
Q Consensus       245 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~  320 (840)
                      |.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++ |.+.+.+|..++.+++|+.+++..+.+
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~-n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG-CVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT-CTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC-CCchhhccHHHhhccCceEEeCCHHHH
Confidence            888888888888888888888888888888888888888888888888 567788888888888888888876544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=5.2e-31  Score=283.48  Aligned_cols=305  Identities=24%  Similarity=0.332  Sum_probs=220.4

Q ss_pred             CccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEE
Q 003200          432 PPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFL  511 (840)
Q Consensus       432 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  511 (840)
                      .+.++++|++++|.+... + .+..+++|++|++++|++++..+   +..+++|++|++++|.+++. +.+..       
T Consensus        42 ~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~-~~~~~-------  108 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI-SALQN-------  108 (347)
T ss_dssp             HHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC-GGGTT-------
T ss_pred             hcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCc-hHHcC-------
Confidence            344566666666655433 1 25556666666666666655443   34455555555555555432 22222       


Q ss_pred             EcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcC
Q 003200          512 SVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKF  591 (840)
Q Consensus       512 ~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  591 (840)
                                    +++|++|++++|.+.+..+      +..+++|+.|++++|.....++ .+..+++|++|++++|.+
T Consensus       109 --------------l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A          109 --------------LTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             --------------CTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             --------------CCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc
Confidence                          4566666666666654322      4457888888888886654443 478888899999999888


Q ss_pred             CCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCcc
Q 003200          592 SGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKT  671 (840)
Q Consensus       592 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~  671 (840)
                      .+..+  +..+++|++|++++|++.+..+  +..+++|+.|++++|.+.+..+  +. .+++|++|++++|.+++..+  
T Consensus       168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCCGG--
T ss_pred             CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hh-cCCcCCEEEccCCccCCCcc--
Confidence            85543  7788889999999998875433  7888899999999998875444  33 68899999999999886544  


Q ss_pred             ccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCC
Q 003200          672 ICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFS  751 (840)
Q Consensus       672 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls  751 (840)
                      +..+++|++|++++|.+++ + ..+..+++|                   +.|++++|++++.  ..+..+++|+.|+++
T Consensus       239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L-------------------~~L~l~~n~l~~~--~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKL-------------------KMLNVGSNQISDI--SVLNNLSQLNSLFLN  295 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC-------------------CEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             hhcCCCCCEEECCCCccCC-C-hhHhcCCCc-------------------CEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence            7888999999999998874 2 244444444                   8999999999864  468889999999999


Q ss_pred             CCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 003200          752 FNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT  804 (840)
Q Consensus       752 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  804 (840)
                      +|++++..|..++.+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999998888999999999999999999997666  888999999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=4e-30  Score=276.54  Aligned_cols=307  Identities=24%  Similarity=0.314  Sum_probs=181.5

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCC
Q 003200          102 LLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFL  181 (840)
Q Consensus       102 ~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L  181 (840)
                      +..+++|++|+++++.+..  +|. +..+++|++|++++|++++. |. +.++++|++|++++|.+...  ..+.++++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            3456777777777777763  343 66677777777777777644 33 77777777777777776653  357777777


Q ss_pred             CEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 003200          182 EHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL  261 (840)
Q Consensus       182 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  261 (840)
                      ++|++++|.+...+.    +..+++|++|++++|......       ..+..+++|++|++++|.+.+..+  +..+++|
T Consensus       113 ~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L  179 (347)
T 4fmz_A          113 RELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDL-------SPLSNMTGLNYLTVTESKVKDVTP--IANLTDL  179 (347)
T ss_dssp             SEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCC-------GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred             CEEECcCCcccCchh----hccCCceeEEECCCCCCcccc-------cchhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence            777777777766533    556677777777777443332       336667777777777777664433  6667777


Q ss_pred             cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCE
Q 003200          262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES  341 (840)
Q Consensus       262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~  341 (840)
                      ++|++++|.+.+..+  +..+++|+.|++++ +.+.+..+  +..+++|++|++++|.+.+..+  +..++     +|++
T Consensus       180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~-----~L~~  247 (347)
T 4fmz_A          180 YSLSLNYNQIEDISP--LASLTSLHYFTAYV-NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS-----QLTW  247 (347)
T ss_dssp             SEEECTTSCCCCCGG--GGGCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCE
T ss_pred             CEEEccCCccccccc--ccCCCccceeeccc-CCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCC-----CCCE
Confidence            777777776664322  66666666666666 34443322  5555666666666665554332  22222     5555


Q ss_pred             EEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcc
Q 003200          342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ  421 (840)
Q Consensus       342 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  421 (840)
                      |++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|+
T Consensus       248 L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          248 LEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSS
T ss_pred             EECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCc
Confidence            55555555442  2345555555555555555543  234555555555555555543222 245555555555555554


Q ss_pred             cceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCC
Q 003200          422 LTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRIS  471 (840)
Q Consensus       422 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~  471 (840)
                      ++                        +..|  +..+++|++|++++|.++
T Consensus       323 l~------------------------~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          323 IT------------------------DIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CC------------------------CCGG--GGGCTTCSEESSSCC---
T ss_pred             cc------------------------cccC--hhhhhccceeehhhhccc
Confidence            43                        3333  566777788888777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.4e-33  Score=316.41  Aligned_cols=385  Identities=17%  Similarity=0.123  Sum_probs=219.2

Q ss_pred             CCCCEEEccCCccccccccc-ccCCCCCCEEEccCCcccccc---ChhhhccCCCCCEEEccCcccceeccCCCCCccCc
Q 003200          361 RNLVTLNLANNSIVGLIPES-FGQLSTLRELQIYDNKLNGTL---SEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQL  436 (840)
Q Consensus       361 ~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  436 (840)
                      ++|++|++++|.++...... +..+++|++|++++|.+.+..   -...+..+++|++|++++|.+......        
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~--------   74 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH--------   74 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH--------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH--------
Confidence            45777777777776543333 566777777777777765321   012355556666666666655432111        


Q ss_pred             cEEecccccCCCCCCccccCCC----CCcEEEccCCCCCCCc----chHHHhccCCccEEEccCccccccccc-ccCCCc
Q 003200          437 VALGLHNCYVGSRFPQWLHSQK----HLQYLNLLNSRISDIF----PIRFLKSASQLKFLDVGLNQFHGKISN-LTKNTQ  507 (840)
Q Consensus       437 ~~L~l~~~~~~~~~~~~l~~l~----~L~~L~Ls~n~i~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~  507 (840)
                                     .....++    +|++|++++|+++...    +. .+..+++|++|++++|.+.+.... +..   
T Consensus        75 ---------------~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~---  135 (461)
T 1z7x_W           75 ---------------CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCE---  135 (461)
T ss_dssp             ---------------HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHH---
T ss_pred             ---------------HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHH---
Confidence                           0111122    5777777777666432    22 224455666666666665432111 000   


Q ss_pred             ccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCcccc-----CCCCcC
Q 003200          508 LLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM-----SYQNLK  582 (840)
Q Consensus       508 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~  582 (840)
                                   ......++|++|++++|.+++.....+...+..+++|++|++++|.+++..+..+.     ..++|+
T Consensus       136 -------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~  202 (461)
T 1z7x_W          136 -------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE  202 (461)
T ss_dssp             -------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred             -------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence                         00011235666666666666655444555555567777777777776654333332     245677


Q ss_pred             EEEccCCcCCCC----CCcccCCCCcccEEEccCCcCcCCC-----CcccccCCCCcEEeCCCCccccc----CChhhhh
Q 003200          583 VLKLSNNKFSGN----LPNSLGSITSLVWLYLRKNRLSGKI-----PISLKNCTALASLDVDENEFVGN----IPTWFGE  649 (840)
Q Consensus       583 ~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~ls~N~l~~~----~p~~~~~  649 (840)
                      +|++++|.+++.    ++..+..+++|++|++++|++++..     +..+..+++|++|++++|.+++.    ++..+. 
T Consensus       203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-  281 (461)
T 1z7x_W          203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-  281 (461)
T ss_dssp             EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-
T ss_pred             EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-
Confidence            777777777653    3445556677777777777765432     22223466777777777776643    444444 


Q ss_pred             ccCCccEEEccCCcccccCCccccC-----ccccceeeccccccccc----CCccccccccCcccccccCcccccccCCc
Q 003200          650 RFSRMLVLILRSNQFHGPLPKTICD-----LAFLQILDLADNNLSGA----IPKCISNLTGMVTVKSFTGSVVYREILPL  720 (840)
Q Consensus       650 ~l~~L~~L~l~~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~~~~~~~~~~~~~~~  720 (840)
                      .+++|++|++++|.+++..+..+..     .++|+.|++++|.+++.    ++..+..+++|                  
T Consensus       282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L------------------  343 (461)
T 1z7x_W          282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL------------------  343 (461)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC------------------
T ss_pred             hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc------------------
Confidence            4677777777777765443333322     25777777777777644    23333333444                  


Q ss_pred             ceEEeCCCCcccccCcccccC-----CCCCCeEeCCCCcccc----cCCcchhccCCCCeEeCCCCcccccCCcccc---
Q 003200          721 VSLLDISRNNFSGEILSEVTN-----LKALQSINFSFNTFTG----RIPESIGTMRALESVDFSVNQLSGEIPQSMS---  788 (840)
Q Consensus       721 L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---  788 (840)
                       +.|++++|++++..+..+..     .++|++|++++|++++    .+|..+..+++|++||+++|++++.-...+.   
T Consensus       344 -~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l  422 (461)
T 1z7x_W          344 -LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV  422 (461)
T ss_dssp             -CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             -cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh
Confidence             77777777777655554432     5677778888877775    6677777777788888888777654111111   


Q ss_pred             --CCCCCCeEeccCCcccc
Q 003200          789 --SLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       789 --~l~~L~~L~ls~N~l~g  805 (840)
                        ....|+.|++.++....
T Consensus       423 ~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          423 RQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             TSTTCCCCEEECTTCCCCH
T ss_pred             ccCCcchhheeecccccCH
Confidence              12356666666655443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.7e-32  Score=307.70  Aligned_cols=217  Identities=18%  Similarity=0.177  Sum_probs=136.6

Q ss_pred             cccEEeccCCcCccc----cCccccCCCCcCEEEccCCcCCCCC-----CcccCCCCcccEEEccCCcCcCC----CCcc
Q 003200          556 SLEGLKLTDNYLQGE----IPDCWMSYQNLKVLKLSNNKFSGNL-----PNSLGSITSLVWLYLRKNRLSGK----IPIS  622 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~p~~  622 (840)
                      +|++|++++|.+++.    ++..+..+++|++|++++|++++..     +..+..+++|++|++++|++++.    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            444444444444432    2344445555666666666554321     11222456677777777766643    4556


Q ss_pred             cccCCCCcEEeCCCCcccccCChhhhhc----cCCccEEEccCCccccc----CCccccCccccceeecccccccccCCc
Q 003200          623 LKNCTALASLDVDENEFVGNIPTWFGER----FSRMLVLILRSNQFHGP----LPKTICDLAFLQILDLADNNLSGAIPK  694 (840)
Q Consensus       623 l~~l~~L~~L~ls~N~l~~~~p~~~~~~----l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~  694 (840)
                      +..+++|++|++++|.+.+..+..+...    .++|++|++++|.+++.    ++..+..+++|+.|++++|++++..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            6667777777777777765544444322    25788888888887754    455666778899999999988765444


Q ss_pred             cccccccCcccccccCcccccccCCcceEEeCCCCcccc----cCcccccCCCCCCeEeCCCCcccccCCcchh-----c
Q 003200          695 CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG----EILSEVTNLKALQSINFSFNTFTGRIPESIG-----T  765 (840)
Q Consensus       695 ~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~  765 (840)
                      .+...-              ....+.|+.|++++|++++    .+|..+..+++|++|++++|++++.....+.     .
T Consensus       360 ~l~~~l--------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~  425 (461)
T 1z7x_W          360 ELCQGL--------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP  425 (461)
T ss_dssp             HHHHHH--------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred             HHHHHH--------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence            443200              0012455899999999986    7888888899999999999998865332222     2


Q ss_pred             cCCCCeEeCCCCcccccCCcc
Q 003200          766 MRALESVDFSVNQLSGEIPQS  786 (840)
Q Consensus       766 l~~L~~L~Ls~N~l~~~~p~~  786 (840)
                      ..+|+.|++.++.+....++.
T Consensus       426 ~~~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          426 GCLLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             TCCCCEEECTTCCCCHHHHHH
T ss_pred             CcchhheeecccccCHHHHHH
Confidence            346888888887776554444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.2e-29  Score=264.43  Aligned_cols=271  Identities=18%  Similarity=0.233  Sum_probs=153.9

Q ss_pred             CCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEE
Q 003200          106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLD  185 (840)
Q Consensus       106 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  185 (840)
                      +++++|++++|.++++ .+..++.+++|++|++++|.+++..|..|+++++|++|++++|.+.......+   ++|++|+
T Consensus        52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEE
T ss_pred             CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEE
Confidence            4667777777777653 33456667777777777777776666677777777777777776654433322   5666666


Q ss_pred             ccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEE
Q 003200          186 LRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLN  265 (840)
Q Consensus       186 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  265 (840)
                      +++|++...+  ...+..+++|++|++++|.+.....    .+..+..+++|++|++++|.++. +|..+.  ++|++|+
T Consensus       128 l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~  198 (330)
T 1xku_A          128 VHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGI----ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELH  198 (330)
T ss_dssp             CCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGB----CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEE
T ss_pred             CCCCcccccC--HhHhcCCccccEEECCCCcCCccCc----ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEE
Confidence            6666665542  2334556666666666665543110    11445556666666666665552 333322  4555555


Q ss_pred             cccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEcc
Q 003200          266 LRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMR  345 (840)
Q Consensus       266 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  345 (840)
                      +++|.+++..+..+..+++|++|++++ +.+.+..+..+..++                             +|++|+++
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~-----------------------------~L~~L~L~  248 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTP-----------------------------HLRELHLN  248 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGST-----------------------------TCCEEECC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCC-CcCceeChhhccCCC-----------------------------CCCEEECC
Confidence            555555554455555555555555555 334433333344333                             44455555


Q ss_pred             CCcccccCccccCCCCCCCEEEccCCcccccccccccC------CCCCCEEEccCCcccc-ccChhhhccCCCCCEEEcc
Q 003200          346 SSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ------LSTLRELQIYDNKLNG-TLSEFHFANLTKLSWFRVG  418 (840)
Q Consensus       346 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L~  418 (840)
                      +|+++ .+|.++..+++|++|++++|++++..+..|..      .+.++.|++++|++.. .++...|..++.++.++++
T Consensus       249 ~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG  327 (330)
T ss_dssp             SSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred             CCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence            55444 35556666777777777777777665555533      2566777777776642 2444466667777777766


Q ss_pred             Cc
Q 003200          419 GN  420 (840)
Q Consensus       419 ~n  420 (840)
                      +|
T Consensus       328 ~N  329 (330)
T 1xku_A          328 NY  329 (330)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.3e-29  Score=267.19  Aligned_cols=289  Identities=17%  Similarity=0.241  Sum_probs=215.2

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEc
Q 003200          107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL  186 (840)
Q Consensus       107 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L  186 (840)
                      ++++++++++.+.  .+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+....+..|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            6888888888887  5676654  68889999998888777778888999999999988888877888888888888888


Q ss_pred             cCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCC--CCCcccccCCCCCcEE
Q 003200          187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN--SSIPDWLYKFSPLECL  264 (840)
Q Consensus       187 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L  264 (840)
                      ++|++..++...     .++|++|++++|.+...++      ..+..+++|++|++++|.++  +..+..+..+ +|++|
T Consensus       110 ~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L  177 (332)
T 2ft3_A          110 SKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPK------GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL  177 (332)
T ss_dssp             CSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCS------GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred             CCCcCCccCccc-----cccCCEEECCCCccCccCH------hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence            888888665422     2688888888888887665      56788888888888888885  3566777777 88888


Q ss_pred             EcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEc
Q 003200          265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM  344 (840)
Q Consensus       265 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  344 (840)
                      ++++|.+++ +|..+.  ++|++|++++ +.+.+..+..+..+++|+.|++++|.+.+..+..+..++     +|+.|++
T Consensus       178 ~l~~n~l~~-l~~~~~--~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L  248 (332)
T 2ft3_A          178 RISEAKLTG-IPKDLP--ETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-----TLRELHL  248 (332)
T ss_dssp             BCCSSBCSS-CCSSSC--SSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-----TCCEEEC
T ss_pred             ECcCCCCCc-cCcccc--CCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-----CCCEEEC
Confidence            888888874 454443  6788888888 567776677778888888888888877776666666555     7777777


Q ss_pred             cCCcccccCccccCCCCCCCEEEccCCcccccccccccC------CCCCCEEEccCCcccc-ccChhhhccCCCCCEEEc
Q 003200          345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQ------LSTLRELQIYDNKLNG-TLSEFHFANLTKLSWFRV  417 (840)
Q Consensus       345 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~L  417 (840)
                      ++|+++ .+|..+..+++|++|++++|++++..+..|..      .++|+.|++++|++.. .++...|..+++|+.+++
T Consensus       249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l  327 (332)
T 2ft3_A          249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF  327 (332)
T ss_dssp             CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred             CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence            777776 46666777777888888888777766655554      2567777777777651 344456777777777777


Q ss_pred             cCcc
Q 003200          418 GGNQ  421 (840)
Q Consensus       418 ~~n~  421 (840)
                      ++|+
T Consensus       328 ~~n~  331 (332)
T 2ft3_A          328 GNYK  331 (332)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.5e-29  Score=266.12  Aligned_cols=246  Identities=19%  Similarity=0.279  Sum_probs=120.0

Q ss_pred             CCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCccc
Q 003200          527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLV  606 (840)
Q Consensus       527 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  606 (840)
                      +++++|++++|.+.+..+..    +..+++|++|++++|.+++..|..|.++++|++|++++|+++ .+|..+.  ++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~  126 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDD----FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLV  126 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCC
T ss_pred             CCCeEEECCCCcCCccCHhH----hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCC
Confidence            34444444444444333322    233455555555555555444555555555555555555555 2333222  4555


Q ss_pred             EEEccCCcCcCCCCcccccCCCCcEEeCCCCcccc--cCChhhhhccCCccEEEccCCcccccCCccccCccccceeecc
Q 003200          607 WLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG--NIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLA  684 (840)
Q Consensus       607 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls  684 (840)
                      +|++++|++++..+..+.++++|++|++++|.++.  ..|..+. .+ +|+.|++++|++++ +|..+.  ++|+.|+++
T Consensus       127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~  201 (332)
T 2ft3_A          127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-GL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLD  201 (332)
T ss_dssp             EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC-SC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCC
T ss_pred             EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc-CC-ccCEEECcCCCCCc-cCcccc--CCCCEEECC
Confidence            55555555554444445555555555555555532  3333332 22 55555555555553 233222  455555555


Q ss_pred             cccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchh
Q 003200          685 DNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG  764 (840)
Q Consensus       685 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  764 (840)
                      +|++++..|..+..+++|                   +.|++++|++++..+..+..+++|+.|++++|+++ .+|..++
T Consensus       202 ~n~i~~~~~~~l~~l~~L-------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          202 HNKIQAIELEDLLRYSKL-------------------YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             SSCCCCCCTTSSTTCTTC-------------------SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             CCcCCccCHHHhcCCCCC-------------------CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence            555554444444444444                   45555555555444445555555555555555555 4555555


Q ss_pred             ccCCCCeEeCCCCcccccCCccccCC------CCCCeEeccCCccc
Q 003200          765 TMRALESVDFSVNQLSGEIPQSMSSL------TFLNHLNLSNNNLT  804 (840)
Q Consensus       765 ~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~ls~N~l~  804 (840)
                      .+++|++|++++|++++..+..+...      ..|+.|++++|++.
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            55555555555555554433333322      34555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.7e-28  Score=261.57  Aligned_cols=268  Identities=16%  Similarity=0.224  Sum_probs=207.2

Q ss_pred             CcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEE
Q 003200          506 TQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLK  585 (840)
Q Consensus       506 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  585 (840)
                      .+++.++++++.+.......++++++|++++|++++..+..    +..+++|++|++++|.+++..|..|..+++|++|+
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhh----hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            35666777777666544445677888888888887765533    44578888888888888877788888888888888


Q ss_pred             ccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccc--cCChhhhhccCCccEEEccCCc
Q 003200          586 LSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG--NIPTWFGERFSRMLVLILRSNQ  663 (840)
Q Consensus       586 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~l~~L~~L~l~~n~  663 (840)
                      +++|+++ .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|.+..  ..+..+. .+++|++|++++|.
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSC
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCc
Confidence            8888888 4555443  688888888888887777778888888888888888853  5555555 68888888888888


Q ss_pred             ccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCC
Q 003200          664 FHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLK  743 (840)
Q Consensus       664 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~  743 (840)
                      ++. +|..+.  ++|+.|++++|++++..|..+..+++|                   +.|++++|++++..+..+..++
T Consensus       183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------~~L~Ls~n~l~~~~~~~~~~l~  240 (330)
T 1xku_A          183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL-------------------AKLGLSFNSISAVDNGSLANTP  240 (330)
T ss_dssp             CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC-------------------CEEECCSSCCCEECTTTGGGST
T ss_pred             ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC-------------------CEEECCCCcCceeChhhccCCC
Confidence            875 444443  788888888888887777777776666                   8888888888877777888888


Q ss_pred             CCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccC------CCCCCeEeccCCccc
Q 003200          744 ALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSS------LTFLNHLNLSNNNLT  804 (840)
Q Consensus       744 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~ls~N~l~  804 (840)
                      +|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..      .+.|+.+++++|++.
T Consensus       241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            8888888888888 78888888888888888888888665555543      367888888888875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.5e-28  Score=260.52  Aligned_cols=227  Identities=18%  Similarity=0.228  Sum_probs=202.9

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      .+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467889999999988 67778888999999999999998 78888999999999999999998 7788899999999999


Q ss_pred             CCCCcccccCChhhhh--------ccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccc
Q 003200          634 VDENEFVGNIPTWFGE--------RFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV  705 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~--------~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  705 (840)
                      +++|++.+.+|..+..        .+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+..+++|   
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L---  231 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL---  231 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC---
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC---
Confidence            9998888888887641        4899999999999998 78888999999999999999998 566677777666   


Q ss_pred             ccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCc
Q 003200          706 KSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQ  785 (840)
Q Consensus       706 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  785 (840)
                                      +.|++++|++.+.+|..++++++|+.|++++|++.+.+|..++++++|++|+|++|++.+.+|+
T Consensus       232 ----------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          232 ----------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             ----------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             ----------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence                            8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCeEeccCCccc
Q 003200          786 SMSSLTFLNHLNLSNNNLT  804 (840)
Q Consensus       786 ~l~~l~~L~~L~ls~N~l~  804 (840)
                      .+.++++|+.+++..|.+.
T Consensus       296 ~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          296 LIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGGGSCTTCEEECCGGGSC
T ss_pred             HHhhccCceEEeCCHHHHH
Confidence            9999999999999876543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=6.9e-28  Score=253.96  Aligned_cols=232  Identities=22%  Similarity=0.273  Sum_probs=182.6

Q ss_pred             CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCC--CCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200          555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGN--LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL  632 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  632 (840)
                      +++++|++++|.++...+..|.++++|++|++++|+++..  .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            4677777777777755555577788888888888877633  2455666788888888888877 466677888888888


Q ss_pred             eCCCCcccccCC-hhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccc-cCCccccccccCcccccccC
Q 003200          633 DVDENEFVGNIP-TWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG-AIPKCISNLTGMVTVKSFTG  710 (840)
Q Consensus       633 ~ls~N~l~~~~p-~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~  710 (840)
                      ++++|++++..+ ..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..+++|        
T Consensus       107 ~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------  177 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------  177 (306)
T ss_dssp             ECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------
T ss_pred             ECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC--------
Confidence            888888875544 3343 67888888888888888888888888888888888888876 567777776666        


Q ss_pred             cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200          711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL  790 (840)
Q Consensus       711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  790 (840)
                                 +.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++||+++|++++..|..+..+
T Consensus       178 -----------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          178 -----------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             -----------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             -----------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence                       888888888888778888888888888888888887777778888888888888888888888888888


Q ss_pred             C-CCCeEeccCCcccccC
Q 003200          791 T-FLNHLNLSNNNLTGKI  807 (840)
Q Consensus       791 ~-~L~~L~ls~N~l~g~i  807 (840)
                      + +|++|++++|++++..
T Consensus       247 ~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          247 PSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CTTCCEEECTTCCEECSG
T ss_pred             hccCCEEEccCCCeeccc
Confidence            4 8888888888887753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.6e-28  Score=264.32  Aligned_cols=276  Identities=20%  Similarity=0.199  Sum_probs=226.7

Q ss_pred             ccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEcc
Q 003200          508 LLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLS  587 (840)
Q Consensus       508 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  587 (840)
                      ....+.+++.++.......+++++|++++|++++..+..    +..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus        33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHH----hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            344666777777655556678999999999988765533    4568999999999999998888889999999999999


Q ss_pred             CCcCCCCCCcccCCCCcccEEEccCCcCcCCCC-cccccCCCCcEEeCCCCc-ccccCChhhhhccCCccEEEccCCccc
Q 003200          588 NNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIP-ISLKNCTALASLDVDENE-FVGNIPTWFGERFSRMLVLILRSNQFH  665 (840)
Q Consensus       588 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~N~-l~~~~p~~~~~~l~~L~~L~l~~n~l~  665 (840)
                      +|++++..+..++.+++|++|++++|++++..+ ..+.++++|++|++++|. +.+..+..+. .+++|++|++++|+++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQ  187 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCC
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcC
Confidence            999997666668999999999999999985444 478899999999999995 6655555665 7899999999999999


Q ss_pred             ccCCccccCccccceeecccccccccCCcc-ccccccCcccccccCcccccccCCcceEEeCCCCcccccCccccc---C
Q 003200          666 GPLPKTICDLAFLQILDLADNNLSGAIPKC-ISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVT---N  741 (840)
Q Consensus       666 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~---~  741 (840)
                      +..|..+..+++|+.|++++|++. .+|.. +..++                   +|+.|++++|++++..+..+.   .
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~-------------------~L~~L~L~~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS-------------------SVECLELRDTDLDTFHFSELSTGET  247 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTT-------------------TEEEEEEESCBCTTCCCC------C
T ss_pred             ccCHHHHhccccCCeecCCCCccc-cchhhhhhhcc-------------------cccEEECCCCccccccccccccccc
Confidence            999999999999999999999986 44433 33344                   449999999999976665543   4


Q ss_pred             CCCCCeEeCCCCcccc----cCCcchhccCCCCeEeCCCCcccccCCcc-ccCCCCCCeEeccCCcccccCCC
Q 003200          742 LKALQSINFSFNTFTG----RIPESIGTMRALESVDFSVNQLSGEIPQS-MSSLTFLNHLNLSNNNLTGKIPL  809 (840)
Q Consensus       742 l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~  809 (840)
                      ...++.++++++.+.+    .+|+.++.+++|++||+++|+++ .+|.. +..+++|++|++++|++++..|.
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            5678888999988876    47888999999999999999999 67766 58999999999999999998773

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=255.13  Aligned_cols=288  Identities=21%  Similarity=0.215  Sum_probs=174.5

Q ss_pred             CCCCCCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcE
Q 003200           56 WTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRY  135 (840)
Q Consensus        56 W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~  135 (840)
                      |.....+|.|.|+ |+.          ++        .-...+|..+.  ++|++|++++|.++++ .+..+..+++|++
T Consensus        23 ~~~~~~~C~~~~~-c~~----------~~--------~~l~~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~   80 (353)
T 2z80_A           23 SNQASLSCDRNGI-CKG----------SS--------GSLNSIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQA   80 (353)
T ss_dssp             ----CCEECTTSE-EEC----------CS--------TTCSSCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred             CCccCCCCCCCeE-eeC----------CC--------CCccccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCE
Confidence            4345567899987 642          22        12234454443  4788888888888743 3336777888888


Q ss_pred             EeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCC
Q 003200          136 LNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNC  215 (840)
Q Consensus       136 L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n  215 (840)
                      |++++|++++..|..|+++++|++|++++|.++......|.++++|++|++++|++..                      
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------  138 (353)
T 2z80_A           81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT----------------------  138 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS----------------------
T ss_pred             EECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc----------------------
Confidence            8888888877777777777777777777777665444445555555555444444433                      


Q ss_pred             CCCcCCCCCCCCCCcccCCCCCCEEECcCC-CCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEeccccc
Q 003200          216 SLHHFPTLASPIPRGLQNLTSLKHLDLDSN-HFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINI  294 (840)
Q Consensus       216 ~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  294 (840)
                          ++..     ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++ +
T Consensus       139 ----l~~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n  208 (353)
T 2z80_A          139 ----LGET-----SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM-K  208 (353)
T ss_dssp             ----SCSS-----CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC-S
T ss_pred             ----cCch-----hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC-C
Confidence                2210     25677788888888887 35555566777777788888877777766677777777777777776 3


Q ss_pred             CccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCCCCCEEEccCCccc
Q 003200          295 GLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIV  374 (840)
Q Consensus       295 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  374 (840)
                      .+.......+..+++|+.|++++|.+.+..+..+..                          ....+.++.++++++.+.
T Consensus       209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------------~~~~~~l~~l~L~~~~l~  262 (353)
T 2z80_A          209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------------------GETNSLIKKFTFRNVKIT  262 (353)
T ss_dssp             CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------------CCCCCCEEEEESCBCC
T ss_pred             ccccchhhhhhhcccccEEECCCCcccccccccccc--------------------------ccccchhhcccccccccc
Confidence            333222222333555555555555544432221111                          122445666666666655


Q ss_pred             c----cccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccce
Q 003200          375 G----LIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTF  424 (840)
Q Consensus       375 ~----~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  424 (840)
                      +    .+|..+.++++|++|++++|+++ .++...|.++++|++|++++|++.+
T Consensus       263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          263 DESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            4    24556667777777777777776 5665556677777777777776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=5.4e-28  Score=254.77  Aligned_cols=277  Identities=19%  Similarity=0.232  Sum_probs=217.7

Q ss_pred             cEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccc--cCccccCCCCcCEEEc
Q 003200          509 LFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE--IPDCWMSYQNLKVLKL  586 (840)
Q Consensus       509 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L  586 (840)
                      +.++++++.++......++++++|++++|.+....+..    +..+++|++|++++|.++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhH----hhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            34566666665555445678888888888887544332    34578899999999988733  3566777889999999


Q ss_pred             cCCcCCCCCCcccCCCCcccEEEccCCcCcCCCC-cccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCccc
Q 003200          587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIP-ISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFH  665 (840)
Q Consensus       587 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~  665 (840)
                      ++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEG
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccc
Confidence            999888 456668888999999999999886554 5788889999999999999877777766 6889999999999998


Q ss_pred             c-cCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCC
Q 003200          666 G-PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKA  744 (840)
Q Consensus       666 ~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~  744 (840)
                      + ..|..+..+++|+.|++++|++++..|..+..+++|                   +.|++++|++++..+..+..+++
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-------------------QVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------CEEECTTSCCSBCCSGGGTTCTT
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-------------------CEEECCCCccCccChhhccCccc
Confidence            7 678888999999999999999997778888877776                   89999999999877778899999


Q ss_pred             CCeEeCCCCcccccCCcchhccC-CCCeEeCCCCcccccCC--ccccCCCCCCeEeccCCcccccCCCC
Q 003200          745 LQSINFSFNTFTGRIPESIGTMR-ALESVDFSVNQLSGEIP--QSMSSLTFLNHLNLSNNNLTGKIPLS  810 (840)
Q Consensus       745 L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ls~N~l~g~ip~~  810 (840)
                      |+.|++++|++++..|..+..++ +|++|++++|++++.-+  ....-+...+.+.+..+.+....|..
T Consensus       225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred             CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence            99999999999998998898884 89999999999986432  11222334555666677777777754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2e-29  Score=292.24  Aligned_cols=131  Identities=15%  Similarity=0.193  Sum_probs=62.8

Q ss_pred             CCCCCcEEEcccCccccccchhhhcC-C-CCcEEecccccCccc-cCcccccCCCCCcEEEcCCCcccccc----hHHHH
Q 003200          257 KFSPLECLNLRNNSLQGTISDAIGNL-T-SVSWLDLSINIGLQG-RIPRSMANFCNLKSVNLRGVHLSQEI----SEILD  329 (840)
Q Consensus       257 ~l~~L~~L~L~~n~l~~~~~~~l~~l-~-~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~  329 (840)
                      .+++|++|++++|.+++..+..+... + +|++|++++|..... .++.....+++|++|++++|.+++..    +....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            56667777777776665555555542 3 377777766432211 12222335566666666666655442    22222


Q ss_pred             hhccCCCCCCCEEEccCCccc----ccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEcc
Q 003200          330 IFSGCVSNGLESLDMRSSSIY----GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIY  393 (840)
Q Consensus       330 ~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  393 (840)
                      .++     +|++|++++|.++    +.++..+..+++|++|++++|.+.+ ++..+..+++|++|+++
T Consensus       190 ~~~-----~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          190 HNT-----SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HCC-----CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred             cCC-----CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence            222     4555555444443    1122223334444444444444443 23344444444444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.9e-29  Score=290.87  Aligned_cols=364  Identities=14%  Similarity=0.078  Sum_probs=190.9

Q ss_pred             CCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCC---CCCcccccc--------
Q 003200           60 GDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQ---GVQIPRFIG--------  128 (840)
Q Consensus        60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~---~~~~p~~l~--------  128 (840)
                      .-|++|.++.+.  ..+  .+.+.+        ......+..+..+++|++|+|+++...   + .+|...+        
T Consensus        39 ~vck~W~~~~~~--~~~--~l~~~~--------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~  105 (592)
T 3ogk_B           39 LVCRRWFKIDSE--TRE--HVTMAL--------CYTATPDRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVT  105 (592)
T ss_dssp             TSCHHHHHHHHH--HCC--EEEESC--------GGGSCHHHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHH
T ss_pred             HHhHHHHHhhhc--ccc--EEEEee--------ccccChHHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHH
Confidence            456689999653  222  233333        222333445667888888888775321   1 1222211        


Q ss_pred             ----CCCCCcEEeccCCcccCCCCCCCCC-CC-CCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcC
Q 003200          129 ----SMRNLRYLNLSDTQFVGMIPPQLGN-LS-DLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATN  202 (840)
Q Consensus       129 ----~l~~L~~L~Ls~n~i~~~~p~~l~~-l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  202 (840)
                          .+++|++|+|++|.+++..+..+.. ++ +|++|++++|.                        ......+.....
T Consensus       106 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~------------------------~~~~~~l~~~~~  161 (592)
T 3ogk_B          106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS------------------------GFTTDGLLSIVT  161 (592)
T ss_dssp             HHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE------------------------EEEHHHHHHHHH
T ss_pred             HHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC------------------------CcCHHHHHHHHh
Confidence                4555566666555554433333332 12 25555555443                        111111222233


Q ss_pred             CCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCC----CcccccCCCCCcEEEcccCccccccchh
Q 003200          203 TLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSS----IPDWLYKFSPLECLNLRNNSLQGTISDA  278 (840)
Q Consensus       203 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~  278 (840)
                      .+++|++|+|++|.+.+...  ..++..+..+++|++|++++|.+++.    ++..+.++++|++|++++|.+.+ ++..
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~  238 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDG--KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF  238 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCS--HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH
T ss_pred             hCCCCCEEECccccccCcch--hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH
Confidence            45566666666665543311  00112345567777777777776532    33445567778888887777764 5677


Q ss_pred             hhcCCCCcEEecccccCc--cccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCc-c
Q 003200          279 IGNLTSVSWLDLSINIGL--QGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLT-D  355 (840)
Q Consensus       279 l~~l~~L~~L~L~~n~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~  355 (840)
                      +..+++|++|+++.....  .+..+..+..+++|+.++++++ ....++..+..++     +|++|++++|.+++... .
T Consensus       239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~-----~L~~L~Ls~~~l~~~~~~~  312 (592)
T 3ogk_B          239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAA-----QIRKLDLLYALLETEDHCT  312 (592)
T ss_dssp             HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGG-----GCCEEEETTCCCCHHHHHH
T ss_pred             HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcC-----CCcEEecCCCcCCHHHHHH
Confidence            777788888887752211  1234455666777777777664 2334444444444     66667766666544332 2


Q ss_pred             ccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccC-----------CccccccChhhhccCCCCCEEEccCcccce
Q 003200          356 QLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYD-----------NKLNGTLSEFHFANLTKLSWFRVGGNQLTF  424 (840)
Q Consensus       356 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~  424 (840)
                      .+..+++|++|+++++...+.++..+..+++|++|++++           +.+++......+..+++|++|+++.+.++.
T Consensus       313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~  392 (592)
T 3ogk_B          313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN  392 (592)
T ss_dssp             HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred             HHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence            345667777777763322222333345566777777772           344322222223446666666665555543


Q ss_pred             eccCCCCCccCccEEecccccCCCCCCccccC-CCCCcEEEcc----CCCCCCCcc----hHHHhccCCccEEEccCc
Q 003200          425 EVKHDWIPPFQLVALGLHNCYVGSRFPQWLHS-QKHLQYLNLL----NSRISDIFP----IRFLKSASQLKFLDVGLN  493 (840)
Q Consensus       425 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~Ls----~n~i~~~~~----~~~~~~l~~L~~L~l~~n  493 (840)
                      .                        .+..+.. +++|++|+++    .|++++...    ..+...+++|+.|++++|
T Consensus       393 ~------------------------~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~  446 (592)
T 3ogk_B          393 E------------------------SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR  446 (592)
T ss_dssp             H------------------------HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred             H------------------------HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence            2                        2222322 5666666664    455555321    122355677777777643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.2e-26  Score=258.42  Aligned_cols=228  Identities=20%  Similarity=0.213  Sum_probs=163.5

Q ss_pred             CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200          555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV  634 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  634 (840)
                      ++++.|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            45666777777776666666777777777777777777666666777777777777777777555556667777777777


Q ss_pred             CCCcccccCChhhhhccCCccEEEccC-CcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          635 DENEFVGNIPTWFGERFSRMLVLILRS-NQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       635 s~N~l~~~~p~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      ++|++.+..+..+. .+++|+.|++++ |.+....+..+..+++|+.|++++|++++ +| .+..+++|           
T Consensus       155 ~~N~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L-----------  220 (452)
T 3zyi_A          155 RNNPIESIPSYAFN-RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGL-----------  220 (452)
T ss_dssp             CSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTC-----------
T ss_pred             CCCCcceeCHhHHh-cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccc-----------
Confidence            77777643333333 677777777776 34444444567777888888888888773 33 24444444           


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL  793 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  793 (840)
                              +.|+|++|++++..|..|.++++|+.|++++|++++..|..|..+++|+.|||++|++++..+..+..+++|
T Consensus       221 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          221 --------EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             --------CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             --------cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence                    788888888887778888888888888888888888778888888888888888888886666677888888


Q ss_pred             CeEeccCCccc
Q 003200          794 NHLNLSNNNLT  804 (840)
Q Consensus       794 ~~L~ls~N~l~  804 (840)
                      ++|++++|++.
T Consensus       293 ~~L~L~~Np~~  303 (452)
T 3zyi_A          293 VELHLHHNPWN  303 (452)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEccCCCcC
Confidence            88888888764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=4.6e-27  Score=244.82  Aligned_cols=235  Identities=18%  Similarity=0.216  Sum_probs=171.1

Q ss_pred             CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCc-CcCCCCcccccCCCCcEEe
Q 003200          555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR-LSGKIPISLKNCTALASLD  633 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~  633 (840)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|+ +....|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            467777777777776666667777777777777777776667777777777777777776 6655566777777777777


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      +++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|           
T Consensus       112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  179 (285)
T 1ozn_A          112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (285)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence            777777765555554 67777777777777777666677778888888888888875555567666666           


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL  793 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  793 (840)
                              +.|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++....+.. .-...+
T Consensus       180 --------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l  250 (285)
T 1ozn_A          180 --------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL  250 (285)
T ss_dssp             --------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH
T ss_pred             --------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHH
Confidence                    78888888888777888888888888888888888766677888888888888888887543321 111234


Q ss_pred             CeEeccCCcccccCCCC
Q 003200          794 NHLNLSNNNLTGKIPLS  810 (840)
Q Consensus       794 ~~L~ls~N~l~g~ip~~  810 (840)
                      +.+..+.+.+.+..|..
T Consensus       251 ~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          251 QKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HHCCSEECCCBEEESGG
T ss_pred             HhcccccCccccCCchH
Confidence            55557778888777763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.5e-27  Score=246.79  Aligned_cols=254  Identities=19%  Similarity=0.164  Sum_probs=126.3

Q ss_pred             EEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCC
Q 003200          510 FLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNN  589 (840)
Q Consensus       510 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  589 (840)
                      .++.+++.++......++++++|++++|.+++..+..    +..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        15 ~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHH----cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            4445555444433333445555555555555433322    223455555555555555544555555555555555555


Q ss_pred             c-CCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccC
Q 003200          590 K-FSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPL  668 (840)
Q Consensus       590 ~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~  668 (840)
                      + +....|..+..+++|++|++++|++++..|..+.++++|++|++++|++++..+..+. .+++|++|++++|++++..
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEEC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-cCCCccEEECCCCcccccC
Confidence            4 4444444555555555555555555544455555555555555555555533333333 4555555555555555444


Q ss_pred             CccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeE
Q 003200          669 PKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSI  748 (840)
Q Consensus       669 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  748 (840)
                      +..+..+++|+.|++++|++++..|..+..+++|                   +.|++++|++++..+..+..+++|+.|
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L  230 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-------------------MTLYLFANNLSALPTEALAPLRALQYL  230 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-------------------CEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccc-------------------cEeeCCCCcCCcCCHHHcccCcccCEE
Confidence            4445555555555555555554445555444444                   555555555554444445555555555


Q ss_pred             eCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcccc
Q 003200          749 NFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS  788 (840)
Q Consensus       749 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  788 (840)
                      ++++|++....+.. .-...++.++.+.+.+....|+.+.
T Consensus       231 ~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          231 RLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             ECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             eccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence            55555555332211 1112333344445555555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=257.72  Aligned_cols=227  Identities=21%  Similarity=0.194  Sum_probs=140.4

Q ss_pred             CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200          555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV  634 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  634 (840)
                      ++++.|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            34555555555555555555556666666666666665555555556666666666666665444445556666666666


Q ss_pred             CCCcccccCChhhhhccCCccEEEccCC-cccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          635 DENEFVGNIPTWFGERFSRMLVLILRSN-QFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       635 s~N~l~~~~p~~~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      ++|++.+..+..+. .+++|++|++++| .+....+..|.++++|+.|++++|+++ .+| .+..+++|           
T Consensus       144 ~~N~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L-----------  209 (440)
T 3zyj_A          144 RNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL-----------  209 (440)
T ss_dssp             CSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSC-----------
T ss_pred             CCCcccccCHHHhh-hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCccc-----------
Confidence            66666533333333 5566666666653 333333445666677777777777666 444 23333333           


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL  793 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  793 (840)
                              +.|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|++|||++|++++..+..+..+++|
T Consensus       210 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          210 --------DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             --------CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             --------CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence                    677777777776667777777777777777777777667777777777777777777776555666777777


Q ss_pred             CeEeccCCcc
Q 003200          794 NHLNLSNNNL  803 (840)
Q Consensus       794 ~~L~ls~N~l  803 (840)
                      +.|++++|++
T Consensus       282 ~~L~L~~Np~  291 (440)
T 3zyj_A          282 ERIHLHHNPW  291 (440)
T ss_dssp             CEEECCSSCE
T ss_pred             CEEEcCCCCc
Confidence            7777777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.8e-26  Score=255.49  Aligned_cols=249  Identities=18%  Similarity=0.184  Sum_probs=219.6

Q ss_pred             ccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEcc
Q 003200          508 LLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLS  587 (840)
Q Consensus       508 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  587 (840)
                      ...++..+..++......++++++|++++|++.+..+..    +..+++|++|++++|.+++..+..|.++++|++|+|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            445666666666655555678999999999998876654    4568999999999999999888999999999999999


Q ss_pred             CCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCccccc
Q 003200          588 NNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGP  667 (840)
Q Consensus       588 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~  667 (840)
                      +|++++..+..|..+++|++|++++|++++..+..|.++++|+.|++++|...+.++...+..+++|++|++++|++++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            99999888888999999999999999999777778999999999999996666677766555899999999999999865


Q ss_pred             CCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCe
Q 003200          668 LPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQS  747 (840)
Q Consensus       668 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  747 (840)
                       | .+..+++|+.|++++|++++..|..+.++++|                   +.|++++|++++..+..|..+++|+.
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------~~L~L~~n~l~~~~~~~~~~l~~L~~  270 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL-------------------KKLWVMNSQVSLIERNAFDGLASLVE  270 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC-------------------CEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCC-------------------CEEEeCCCcCceECHHHhcCCCCCCE
Confidence             3 58889999999999999998888889888777                   99999999999999999999999999


Q ss_pred             EeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200          748 INFSFNTFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       748 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                      |+|++|++++..+..|..+++|+.|+|++|++..
T Consensus       271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             EECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            9999999998888889999999999999998753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=4.8e-26  Score=252.58  Aligned_cols=248  Identities=21%  Similarity=0.209  Sum_probs=218.8

Q ss_pred             ccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEcc
Q 003200          508 LLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLS  587 (840)
Q Consensus       508 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  587 (840)
                      ...++..+..++......+++++.|++++|++.+..+..    +..+++|++|++++|.+++..+..|.++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456667777776655556788999999999998776544    4568999999999999998888899999999999999


Q ss_pred             CCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCccccc
Q 003200          588 NNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGP  667 (840)
Q Consensus       588 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~  667 (840)
                      +|++++..+..|..+++|++|++++|+++...+..|.++++|++|++++|...+.++...+..+++|++|++++|.++..
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            99999877778999999999999999999777778999999999999997666677765555899999999999999854


Q ss_pred             CCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCe
Q 003200          668 LPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQS  747 (840)
Q Consensus       668 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  747 (840)
                       | .+..+++|+.|++++|++++..|..+.++++|                   +.|++++|++++..+..|.++++|+.
T Consensus       201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------~~L~L~~n~l~~~~~~~~~~l~~L~~  259 (440)
T 3zyj_A          201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL-------------------QKLWMIQSQIQVIERNAFDNLQSLVE  259 (440)
T ss_dssp             -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC-------------------CEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred             -c-ccCCCcccCEEECCCCccCccChhhhccCccC-------------------CEEECCCCceeEEChhhhcCCCCCCE
Confidence             4 47889999999999999998888899888877                   99999999999999999999999999


Q ss_pred             EeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200          748 INFSFNTFTGRIPESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       748 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                      |+|++|++++..+..|..+++|+.|+|++|++.
T Consensus       260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             EECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            999999999888888999999999999999975

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.5e-28  Score=257.54  Aligned_cols=244  Identities=21%  Similarity=0.256  Sum_probs=163.8

Q ss_pred             CCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCc-cccCcccc-------CCCCcCEEEccCCcCCCCCCccc
Q 003200          528 NLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQ-GEIPDCWM-------SYQNLKVLKLSNNKFSGNLPNSL  599 (840)
Q Consensus       528 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~l  599 (840)
                      +|+++++++|.+  .+|..+..      .|+.|++++|.++ ..+|..+.       ++++|++|++++|++++.+|..+
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             CceeEeeccccc--ccHHHHHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            345555555555  34433322      2666666666663 33444333       56667777777777666666654


Q ss_pred             --CCCCcccEEEccCCcCcCCCCcccccC-----CCCcEEeCCCCcccccCChhhhhccCCccEEEccCCccccc--CCc
Q 003200          600 --GSITSLVWLYLRKNRLSGKIPISLKNC-----TALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGP--LPK  670 (840)
Q Consensus       600 --~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~--~p~  670 (840)
                        ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..|..+. .+++|++|++++|++.+.  .|.
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHH
Confidence              6666777777777776655 6655555     6677777777777655555555 566777777777766543  222


Q ss_pred             cc--cCccccceeecccccccc--cCC-ccccccccCcccccccCcccccccCCcceEEeCCCCcccccCc-ccccCCCC
Q 003200          671 TI--CDLAFLQILDLADNNLSG--AIP-KCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEIL-SEVTNLKA  744 (840)
Q Consensus       671 ~l--~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~-~~l~~l~~  744 (840)
                      .+  ..+++|++|++++|++++  .++ ..+.++++|                   +.|++++|++++.+| ..+..+++
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL-------------------QGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC-------------------SEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC-------------------CEEECCCCcCCcccchhhhhhcCC
Confidence            33  677888888888888772  111 122333444                   888888888887765 45667889


Q ss_pred             CCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200          745 LQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       745 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  805 (840)
                      |++|++++|+++ .+|..+.  ++|++||+++|++++. |. +..+++|++|++++|++++
T Consensus       255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            999999999998 7887776  8899999999999865 66 8889999999999999876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.1e-26  Score=245.45  Aligned_cols=245  Identities=21%  Similarity=0.144  Sum_probs=129.1

Q ss_pred             CCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCccc
Q 003200          527 SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLV  606 (840)
Q Consensus       527 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  606 (840)
                      ++|++|++++|.+++..+..    +..+++|++|++++|.+++..+  +..+++|++|++++|++++..     ..++|+
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~  102 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE  102 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHH----HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred             CCCCEEECcCCccCcCCHHH----hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence            45556666666555543332    2335556666666665554433  555555666666665555321     225555


Q ss_pred             EEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCcccc-Cccccceeeccc
Q 003200          607 WLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC-DLAFLQILDLAD  685 (840)
Q Consensus       607 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~  685 (840)
                      +|++++|++++..+..   +++|++|++++|++++..+..+. .+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus       103 ~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             EEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             EEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            6666665555433322   34555666666655544444443 455556666666655555444442 455556666666


Q ss_pred             ccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhc
Q 003200          686 NNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGT  765 (840)
Q Consensus       686 N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  765 (840)
                      |.+++. |.. ..+                   ++|+.|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..
T Consensus       179 N~l~~~-~~~-~~l-------------------~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          179 NFIYDV-KGQ-VVF-------------------AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             SCCCEE-ECC-CCC-------------------TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             CcCccc-ccc-ccc-------------------ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhc
Confidence            555522 211 112                   223566666666653 2333555666666666666665 34555556


Q ss_pred             cCCCCeEeCCCCccc-ccCCccccCCCCCCeEecc-CCcccccCCC
Q 003200          766 MRALESVDFSVNQLS-GEIPQSMSSLTFLNHLNLS-NNNLTGKIPL  809 (840)
Q Consensus       766 l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~ip~  809 (840)
                      +++|+.|++++|++. +.+|..+..++.|+.++++ .+.+.|..|.
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            666666666666665 4555555566666666655 3345555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.2e-24  Score=247.80  Aligned_cols=261  Identities=23%  Similarity=0.260  Sum_probs=122.0

Q ss_pred             CCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCc
Q 003200          459 HLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNS  538 (840)
Q Consensus       459 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  538 (840)
                      +++.|++++|.++.++.. +   .++|++|++++|.++....   ..++|++|++++|++++ +|..+++|++|++++|.
T Consensus        41 ~l~~L~ls~n~L~~lp~~-l---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDC-L---PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSC-C---CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChh-h---CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCCc
Confidence            466677777766644332 1   1456666666666653222   23455555555555443 22244445555555444


Q ss_pred             CcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCC
Q 003200          539 FSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGK  618 (840)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  618 (840)
                      +++.                             |.   .+++|+.|++++|++++ +|..   +++|++|++++|++++ 
T Consensus       113 l~~l-----------------------------~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-  155 (622)
T 3g06_A          113 LTHL-----------------------------PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-  155 (622)
T ss_dssp             CCCC-----------------------------CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred             CCCC-----------------------------CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-
Confidence            4432                             22   23444445555554443 2221   2444555555554442 


Q ss_pred             CCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccc
Q 003200          619 IPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISN  698 (840)
Q Consensus       619 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  698 (840)
                      +|.   .+++|+.|++++|.++ .+|.    .+++|+.|++++|.+++ +|..   +++|+.|++++|.++ .+|..+  
T Consensus       156 l~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~--  220 (622)
T 3g06_A          156 LPA---LPSELCKLWAYNNQLT-SLPM----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP--  220 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC--
T ss_pred             cCC---ccCCCCEEECCCCCCC-CCcc----cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC--
Confidence            222   1234445555555544 2331    23445555555555443 2221   244555555555554 233211  


Q ss_pred             cccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCc
Q 003200          699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQ  778 (840)
Q Consensus       699 l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  778 (840)
                                          ++|+.|++++|++++ +|   ..+++|+.|++++|+++ .+|.   .+++|++|+|++|+
T Consensus       221 --------------------~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          221 --------------------SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             --------------------TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred             --------------------CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCC
Confidence                                122455555555553 33   23345555555555555 3443   34455555555555


Q ss_pred             ccccCCccccCCCCCCeEeccCCcccccCC
Q 003200          779 LSGEIPQSMSSLTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       779 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  808 (840)
                      ++ .+|..+..+++|+.|++++|+++|.+|
T Consensus       273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          273 LT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            55 445555555555555555555555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=9.8e-25  Score=248.54  Aligned_cols=268  Identities=24%  Similarity=0.269  Sum_probs=171.8

Q ss_pred             CccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcc
Q 003200          435 QLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVN  514 (840)
Q Consensus       435 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  514 (840)
                      +++.|++++|.++ .+|..+.  ++|++|++++|+++.+..     .+++|++|++++|++++...   ..++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence            5899999999998 4455444  899999999999997655     47899999999999986444   56899999999


Q ss_pred             cCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCC
Q 003200          515 SNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGN  594 (840)
Q Consensus       515 ~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  594 (840)
                      +|.+++... .+++|+.|++++|++++..+.        +++|++|++++|.+++ +|.   .+++|+.|++++|++++ 
T Consensus       110 ~N~l~~l~~-~l~~L~~L~L~~N~l~~lp~~--------l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          110 SNPLTHLPA-LPSGLCKLWIFGNQLTSLPVL--------PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             SCCCCCCCC-CCTTCCEEECCSSCCSCCCCC--------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             CCcCCCCCC-CCCCcCEEECCCCCCCcCCCC--------CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence            999987544 666777777777766642211        2455555555555553 222   12345555555555553 


Q ss_pred             CCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccC
Q 003200          595 LPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICD  674 (840)
Q Consensus       595 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~  674 (840)
                      +|   ..+++|+.|++++|++++                         +|.    ..++|+.|++++|.++. +|..   
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~-------------------------l~~----~~~~L~~L~L~~N~l~~-l~~~---  219 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLAS-------------------------LPT----LPSELYKLWAYNNRLTS-LPAL---  219 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSC-------------------------CCC----CCTTCCEEECCSSCCSS-CCCC---
T ss_pred             Cc---ccCCCCcEEECCCCCCCC-------------------------CCC----ccchhhEEECcCCcccc-cCCC---
Confidence            22   223444455555554442                         332    12445555555555542 2221   


Q ss_pred             ccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCc
Q 003200          675 LAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNT  754 (840)
Q Consensus       675 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~  754 (840)
                      +++|+.|++++|++++ +|.   .++                   +|+.|++++|+|+ .+|.   .+++|+.|+|++|+
T Consensus       220 ~~~L~~L~Ls~N~L~~-lp~---~l~-------------------~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-LPV---LPS-------------------ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCT-------------------TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred             CCCCCEEEccCCccCc-CCC---CCC-------------------cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCC
Confidence            3556666777776663 441   122                   2366777777776 3444   45677777777777


Q ss_pred             ccccCCcchhccCCCCeEeCCCCcccccCCccccCCC
Q 003200          755 FTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT  791 (840)
Q Consensus       755 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  791 (840)
                      ++ .+|..+.++++|+.|+|++|++++.+|..+..++
T Consensus       273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            77 6677777777777777777777777777665544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.2e-27  Score=249.06  Aligned_cols=246  Identities=20%  Similarity=0.264  Sum_probs=205.1

Q ss_pred             CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCC-CCCCcccC-------CCCcccEEEccCCcCcCCCCccc-
Q 003200          553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFS-GNLPNSLG-------SITSLVWLYLRKNRLSGKIPISL-  623 (840)
Q Consensus       553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~l~~~~p~~l-  623 (840)
                      ..++|+.|++++|.+  .+|..+...  |++|++++|+++ ..+|..+.       .+++|++|++++|++++.+|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            357899999999999  677766554  999999999994 45565554       68999999999999999999887 


Q ss_pred             -ccCCCCcEEeCCCCcccccCChhhhhcc-----CCccEEEccCCcccccCCccccCccccceeecccccccccC--Ccc
Q 003200          624 -KNCTALASLDVDENEFVGNIPTWFGERF-----SRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAI--PKC  695 (840)
Q Consensus       624 -~~l~~L~~L~ls~N~l~~~~p~~~~~~l-----~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~  695 (840)
                       ..+++|++|++++|++++. |..+. .+     ++|++|++++|++.+..|..+..+++|++|++++|++.+.+  |..
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence             8999999999999999977 87776 45     89999999999999999999999999999999999987653  333


Q ss_pred             c--cccccCcccccccCcccccccCCcceEEeCCCCcccc--cCc-ccccCCCCCCeEeCCCCcccccCC-cchhccCCC
Q 003200          696 I--SNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG--EIL-SEVTNLKALQSINFSFNTFTGRIP-ESIGTMRAL  769 (840)
Q Consensus       696 ~--~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~~-~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L  769 (840)
                      +  ..+++|                   +.|++++|++++  .++ ..+.++++|++|++++|++++.+| ..+..+++|
T Consensus       195 ~~~~~l~~L-------------------~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          195 LCPLKFPTL-------------------QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             SCTTSCTTC-------------------CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             HHhccCCCC-------------------CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence            3  555555                   999999999983  233 334688999999999999998775 567778999


Q ss_pred             CeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCCCcCCCcCcCCCCCCCCC
Q 003200          770 ESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGNDLC  827 (840)
Q Consensus       770 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~lc  827 (840)
                      ++|++++|+++ .+|..+.  ++|++|++++|++++. |....+..+....+.+|.+.
T Consensus       256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence            99999999999 8888877  8999999999999987 76656666665666666443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=5.6e-26  Score=254.08  Aligned_cols=222  Identities=18%  Similarity=0.161  Sum_probs=169.5

Q ss_pred             CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200          553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL  632 (840)
Q Consensus       553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  632 (840)
                      .+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..     ..++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            34578888888888887777788888888888888888876554  777888888888888887432     23788888


Q ss_pred             eCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcccc-ccccCcccccccCc
Q 003200          633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCIS-NLTGMVTVKSFTGS  711 (840)
Q Consensus       633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~  711 (840)
                      ++++|.+++..+.    .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+. .+++|         
T Consensus       105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L---------  171 (487)
T 3oja_A          105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL---------  171 (487)
T ss_dssp             ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC---------
T ss_pred             ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc---------
Confidence            8888888765543    357788888888888888788888888888888888888877776664 45555         


Q ss_pred             ccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCC
Q 003200          712 VVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT  791 (840)
Q Consensus       712 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  791 (840)
                                +.|+|++|.+++. | ....+++|+.|+|++|++++. |..++.+++|+.||+++|++++ +|..+..++
T Consensus       172 ----------~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~  237 (487)
T 3oja_A          172 ----------EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ  237 (487)
T ss_dssp             ----------CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred             ----------cEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCC
Confidence                      8888888888765 2 344578888888888888854 4447888888888888888884 777788888


Q ss_pred             CCCeEeccCCccc-ccCC
Q 003200          792 FLNHLNLSNNNLT-GKIP  808 (840)
Q Consensus       792 ~L~~L~ls~N~l~-g~ip  808 (840)
                      +|+.|++++|++. +.+|
T Consensus       238 ~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          238 NLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             TCCEEECTTCCBCHHHHH
T ss_pred             CCCEEEcCCCCCcCcchH
Confidence            8888888888887 5444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.1e-26  Score=245.49  Aligned_cols=241  Identities=17%  Similarity=0.158  Sum_probs=189.0

Q ss_pred             EEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEc
Q 003200          531 YLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYL  610 (840)
Q Consensus       531 ~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  610 (840)
                      ..+++.+.+.....    ..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+  +..+++|++|++
T Consensus        14 i~~ls~~~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           14 IEKVTDSSLKQALA----SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EESCCTTTHHHHHH----HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             EeeccccchhhhHH----HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            34455555433222    223346789999999999988777888899999999999999886554  888899999999


Q ss_pred             cCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccc
Q 003200          611 RKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG  690 (840)
Q Consensus       611 ~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  690 (840)
                      ++|++++..     ..++|++|++++|++++..+.    .+++|++|++++|++++..|..+..+++|+.|++++|++++
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            999887432     348899999999998865544    36789999999999998888888888999999999999987


Q ss_pred             cCCcccc-ccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCC
Q 003200          691 AIPKCIS-NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRAL  769 (840)
Q Consensus       691 ~~p~~~~-~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  769 (840)
                      ..|..+. .+++|                   +.|++++|++++. + ....+++|++|++++|++++ +|..+..+++|
T Consensus       159 ~~~~~~~~~l~~L-------------------~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L  216 (317)
T 3o53_A          159 VNFAELAASSDTL-------------------EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV  216 (317)
T ss_dssp             EEGGGGGGGTTTC-------------------CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred             ccHHHHhhccCcC-------------------CEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcc
Confidence            6666553 45555                   8899999998854 3 33458899999999999985 55558889999


Q ss_pred             CeEeCCCCcccccCCccccCCCCCCeEeccCCccc-ccCCC
Q 003200          770 ESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT-GKIPL  809 (840)
Q Consensus       770 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~ip~  809 (840)
                      ++|++++|+++ .+|..+..+++|++|++++|+++ +.+|.
T Consensus       217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            99999999998 57888888999999999999988 55553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1e-24  Score=225.82  Aligned_cols=226  Identities=22%  Similarity=0.202  Sum_probs=164.7

Q ss_pred             eccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCccc
Q 003200          561 KLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFV  640 (840)
Q Consensus       561 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  640 (840)
                      +..+..++ .+|..+.  ++|++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|++++|+++
T Consensus        13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            33344443 3444332  45777777777777665556667777777777777776655666777777777777777777


Q ss_pred             ccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccccc-CCccccccccCcccccccCcccccccCC
Q 003200          641 GNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGA-IPKCISNLTGMVTVKSFTGSVVYREILP  719 (840)
Q Consensus       641 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~~~  719 (840)
                      +..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|++++. +|..+.++++|                 
T Consensus        90 ~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-----------------  151 (276)
T 2z62_A           90 SLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-----------------  151 (276)
T ss_dssp             EECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------
T ss_pred             ccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------
Confidence            55555555 577777777777777776666777888888888888888753 57777776666                 


Q ss_pred             cceEEeCCCCcccccCcccccCCCCCC----eEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCe
Q 003200          720 LVSLLDISRNNFSGEILSEVTNLKALQ----SINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNH  795 (840)
Q Consensus       720 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  795 (840)
                        +.|++++|++++..+..+..+++|+    .|++++|++++..+..+. ..+|++|++++|++++..+..+..+++|++
T Consensus       152 --~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  228 (276)
T 2z62_A          152 --EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQK  228 (276)
T ss_dssp             --CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred             --CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccE
Confidence              8888888888877777777777666    889999999966555554 458999999999999766666788999999


Q ss_pred             EeccCCcccccCCCC
Q 003200          796 LNLSNNNLTGKIPLS  810 (840)
Q Consensus       796 L~ls~N~l~g~ip~~  810 (840)
                      |++++|++++..|.-
T Consensus       229 L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          229 IWLHTNPWDCSCPRI  243 (276)
T ss_dssp             EECCSSCBCCCTTTT
T ss_pred             EEccCCcccccCCch
Confidence            999999999887754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=8.5e-27  Score=270.25  Aligned_cols=236  Identities=14%  Similarity=0.061  Sum_probs=160.4

Q ss_pred             CCCcccEEeccCCcCccccC-ccccCCCCcCEEEccCCcCCCC-CCcccCCCCcccEEEccC---------CcCcCCCCc
Q 003200          553 ETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKVLKLSNNKFSGN-LPNSLGSITSLVWLYLRK---------NRLSGKIPI  621 (840)
Q Consensus       553 ~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~---------n~l~~~~p~  621 (840)
                      .+++|++|++++|.+++... ..+..+++|++|++++| +++. ++.....+++|++|++.+         +.+++....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            46889999999998765432 23567899999999988 4422 122223578899998843         445433333


Q ss_pred             cc-ccCCCCcEEeCCCCcccccCChhhhhccCCccEEEcc--C----CcccccC-----CccccCccccceeeccccccc
Q 003200          622 SL-KNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR--S----NQFHGPL-----PKTICDLAFLQILDLADNNLS  689 (840)
Q Consensus       622 ~l-~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~--~----n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~  689 (840)
                      .+ ..+++|+.|+++.|.+++..+..+...+++|+.|+++  +    +.++...     +..+..+++|+.|++++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence            33 3488999998888888877777776668899999998  3    4555221     12256678899999977 565


Q ss_pred             ccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccc-cCCCCCCeEeCCCCcccccCCc-chhccC
Q 003200          690 GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGRIPE-SIGTMR  767 (840)
Q Consensus       690 ~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~  767 (840)
                      +..+..+..                  .+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. .+..++
T Consensus       445 ~~~~~~l~~------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          445 DKVFEYIGT------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHHHHHHH------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HHHHHHHHH------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            444444433                  12344899999999887666665 6789999999999998755444 445688


Q ss_pred             CCCeEeCCCCcccccCCccc-cCCCCCCeEeccCCcccccCC
Q 003200          768 ALESVDFSVNQLSGEIPQSM-SSLTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       768 ~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~g~ip  808 (840)
                      +|++|++++|+++....+.+ ..++.|+...+..+.-....|
T Consensus       507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~  548 (594)
T 2p1m_B          507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRP  548 (594)
T ss_dssp             GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSC
T ss_pred             CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcccccc
Confidence            99999999998865444444 456777776666665444333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.5e-25  Score=250.52  Aligned_cols=236  Identities=20%  Similarity=0.128  Sum_probs=193.7

Q ss_pred             CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcc
Q 003200          526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSL  605 (840)
Q Consensus       526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  605 (840)
                      +++|++|++++|.+.+..|..    +..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L  101 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSI  101 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGG----GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTC
T ss_pred             CCCccEEEeeCCcCCCCCHHH----HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCc
Confidence            356777778888777765543    3457899999999999987665  8889999999999999885432     3789


Q ss_pred             cEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCcccc-Cccccceeecc
Q 003200          606 VWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC-DLAFLQILDLA  684 (840)
Q Consensus       606 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls  684 (840)
                      ++|++++|.+++..+.   .+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..|..+. .+++|+.|+++
T Consensus       102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence            9999999999866554   357899999999999987787776 689999999999999988888876 78999999999


Q ss_pred             cccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchh
Q 003200          685 DNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIG  764 (840)
Q Consensus       685 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  764 (840)
                      +|.+++..+  ...++                   +|+.|+|++|.+++.. ..+..+++|+.|+|++|.+++ +|..++
T Consensus       178 ~N~l~~~~~--~~~l~-------------------~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~  234 (487)
T 3oja_A          178 YNFIYDVKG--QVVFA-------------------KLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALR  234 (487)
T ss_dssp             TSCCCEEEC--CCCCT-------------------TCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCC
T ss_pred             CCccccccc--cccCC-------------------CCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhc
Confidence            999985522  22344                   4499999999999654 458999999999999999995 788899


Q ss_pred             ccCCCCeEeCCCCccc-ccCCccccCCCCCCeEecc
Q 003200          765 TMRALESVDFSVNQLS-GEIPQSMSSLTFLNHLNLS  799 (840)
Q Consensus       765 ~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls  799 (840)
                      .+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            9999999999999998 7788888889989888886

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=7.3e-24  Score=218.38  Aligned_cols=213  Identities=23%  Similarity=0.280  Sum_probs=134.4

Q ss_pred             CCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEecc
Q 003200           60 GDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLS  139 (840)
Q Consensus        60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls  139 (840)
                      .++|.|.|+.|.- .+.++.+++++.       .+. .+|..+.  +++++|+|++|.++++ .+..+..+++|++|+++
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~-------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~   69 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSK-------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLN   69 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTS-------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCC-------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECC
Confidence            5789999999953 334566777774       332 3555443  5678888888887754 34467777888888888


Q ss_pred             CCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCc
Q 003200          140 DTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH  219 (840)
Q Consensus       140 ~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  219 (840)
                      +|.+++..+..|.++++|++|++++|.+.......|.++++|++|++++|+++..+.  ..+..+++|++|++++|.+++
T Consensus        70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A           70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP--RVFDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCC
T ss_pred             CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH--HHhCcCcCCCEEECCCCcCCc
Confidence            888776555566777888888888887777666677777777777777777666532  234455566666666665555


Q ss_pred             CCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcCCCCcEEeccc
Q 003200          220 FPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSI  292 (840)
Q Consensus       220 ~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  292 (840)
                      .++      ..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       148 ~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          148 LPK------GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cCH------hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence            443      3455555556666655555554444555555555555555555544444444455555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=3e-26  Score=265.70  Aligned_cols=95  Identities=18%  Similarity=0.257  Sum_probs=47.8

Q ss_pred             cccCCCCCCEEECcCCCCCC---CCcc------------cccCCCCCcEEEcccCccccccchhhh-cCCCCcEEecccc
Q 003200          230 GLQNLTSLKHLDLDSNHFNS---SIPD------------WLYKFSPLECLNLRNNSLQGTISDAIG-NLTSVSWLDLSIN  293 (840)
Q Consensus       230 ~l~~l~~L~~L~Ls~n~l~~---~~p~------------~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n  293 (840)
                      .+..+++|++|+++++....   ..|.            ....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            35566777777777764211   1111            122455666666666666555444443 4566666666653


Q ss_pred             cCcccc-CcccccCCCCCcEEEcCCCcccccc
Q 003200          294 IGLQGR-IPRSMANFCNLKSVNLRGVHLSQEI  324 (840)
Q Consensus       294 ~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~  324 (840)
                      ..+... ++.....+++|++|++++|.+++..
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~  172 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVS  172 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence            232221 2233334555555555555544433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=8.7e-24  Score=218.85  Aligned_cols=212  Identities=20%  Similarity=0.186  Sum_probs=159.3

Q ss_pred             CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200          555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV  634 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  634 (840)
                      +++++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35777777777777666666777777777777777777666667777777777777777777666677777777777777


Q ss_pred             CCCcccccCChhhhhccCCccEEEccCCccccc-CCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          635 DENEFVGNIPTWFGERFSRMLVLILRSNQFHGP-LPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       635 s~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      ++|.+.+..+..+. .+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..++++.          
T Consensus       108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------  176 (276)
T 2z62_A          108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------  176 (276)
T ss_dssp             TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT----------
T ss_pred             CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc----------
Confidence            77777755444454 677888888888887764 577888888888888888888876666777666652          


Q ss_pred             ccccCCcce-EEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC
Q 003200          714 YREILPLVS-LLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP  784 (840)
Q Consensus       714 ~~~~~~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  784 (840)
                            .+. .|++++|++++..+..+. ..+|+.|++++|++++..+..|..+++|++|++++|++.+..|
T Consensus       177 ------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          177 ------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             ------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence                  112 789999999865554444 4589999999999997777778899999999999999986543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.6e-23  Score=213.19  Aligned_cols=202  Identities=21%  Similarity=0.249  Sum_probs=107.7

Q ss_pred             cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200          556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD  635 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls  635 (840)
                      ..+.++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            4566777777776 3454432  467777777777776555566667777777777777665444455666666666666


Q ss_pred             CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200          636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR  715 (840)
Q Consensus       636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  715 (840)
                      +|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|             
T Consensus        94 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------  159 (270)
T 2o6q_A           94 DNKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-------------  159 (270)
T ss_dssp             SSCCCCCCTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcCCcCCHhHcc-cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-------------
Confidence            6666533322222 45555555555555555544445555555555555555543333333333333             


Q ss_pred             ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200          716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                            +.|++++|++++..+..+.++++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus       160 ------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          160 ------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             ------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence                  44444444444433333444444444444444444333333444444444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.8e-24  Score=221.59  Aligned_cols=222  Identities=18%  Similarity=0.180  Sum_probs=172.5

Q ss_pred             cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200          556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD  635 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls  635 (840)
                      .+..+++.++.+....  ....+++|++|++++|.++..  ..+..+++|++|++++|++++.  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            4445556666555442  345567778888888777632  2467777888888888887752  367778888888888


Q ss_pred             CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200          636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR  715 (840)
Q Consensus       636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  715 (840)
                      +|.+++..+..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|             
T Consensus        94 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------  159 (272)
T 3rfs_A           94 GNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-------------  159 (272)
T ss_dssp             TSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence            8888755555454 67888888888888887777778888889999999998886666667777666             


Q ss_pred             ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCe
Q 003200          716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNH  795 (840)
Q Consensus       716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  795 (840)
                            +.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|++|++++|++.+..       +.|+.
T Consensus       160 ------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~  226 (272)
T 3rfs_A          160 ------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRY  226 (272)
T ss_dssp             ------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHH
T ss_pred             ------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHH
Confidence                  88999999998777777888999999999999999888888899999999999999988654       46888


Q ss_pred             EeccCCcccccCCCC
Q 003200          796 LNLSNNNLTGKIPLS  810 (840)
Q Consensus       796 L~ls~N~l~g~ip~~  810 (840)
                      |+++.|.++|.+|..
T Consensus       227 l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          227 LSEWINKHSGVVRNS  241 (272)
T ss_dssp             HHHHHHHTGGGBBCT
T ss_pred             HHHHHHhCCCcccCc
Confidence            999999999999975

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=2.1e-25  Score=243.12  Aligned_cols=242  Identities=15%  Similarity=0.231  Sum_probs=175.2

Q ss_pred             hhccCCCCcccEEeccCCcCccccC----ccccCCCCcCEEEccCCc---CCCCCCccc-------CCCCcccEEEccCC
Q 003200          548 CYRVNETKSLEGLKLTDNYLQGEIP----DCWMSYQNLKVLKLSNNK---FSGNLPNSL-------GSITSLVWLYLRKN  613 (840)
Q Consensus       548 ~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~---l~~~~~~~l-------~~l~~L~~L~L~~n  613 (840)
                      ...+..+++|++|++++|.+++..+    ..+..+++|++|++++|.   +++.+|..+       ..+++|++|+|++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            3344556778888888887776433    346677788888888753   344445444       57788888888888


Q ss_pred             cCcC----CCCcccccCCCCcEEeCCCCcccccCChhhhhc---c---------CCccEEEccCCccc-ccCC---cccc
Q 003200          614 RLSG----KIPISLKNCTALASLDVDENEFVGNIPTWFGER---F---------SRMLVLILRSNQFH-GPLP---KTIC  673 (840)
Q Consensus       614 ~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~---l---------~~L~~L~l~~n~l~-~~~p---~~l~  673 (840)
                      ++++    .+|..+..+++|++|++++|.+.+..+..+...   +         ++|++|++++|+++ +.+|   ..+.
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            8876    366677888888888888888865544444422   2         78888888888886 3344   4566


Q ss_pred             Cccccceeecccccccc-----cCCccccccccCcccccccCcccccccCCcceEEeCCCCccc----ccCcccccCCCC
Q 003200          674 DLAFLQILDLADNNLSG-----AIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFS----GEILSEVTNLKA  744 (840)
Q Consensus       674 ~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~----~~~~~~l~~l~~  744 (840)
                      .+++|++|++++|+++.     ..|..+..+++|                   +.|+|++|.++    +.+|..+..+++
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-------------------~~L~Ls~n~l~~~g~~~l~~~l~~~~~  245 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-------------------KVLDLQDNTFTHLGSSALAIALKSWPN  245 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-------------------CEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-------------------cEEECcCCCCCcHHHHHHHHHHccCCC
Confidence            77888888888888872     233355555555                   88888888886    567778888888


Q ss_pred             CCeEeCCCCccccc----CCcchhc--cCCCCeEeCCCCcccc----cCCccc-cCCCCCCeEeccCCcccccCC
Q 003200          745 LQSINFSFNTFTGR----IPESIGT--MRALESVDFSVNQLSG----EIPQSM-SSLTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       745 L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~ip  808 (840)
                      |+.|+|++|++++.    +|..+..  +++|++|+|++|++++    .+|..+ .++++|++|++++|++++..|
T Consensus       246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            88888888888866    5666643  8888889998888887    477777 567888889998888887664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=7.6e-23  Score=212.42  Aligned_cols=201  Identities=19%  Similarity=0.176  Sum_probs=108.2

Q ss_pred             CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200          553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL  632 (840)
Q Consensus       553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  632 (840)
                      .++++++++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|++|++++|.+++..+.  ..+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            4556666666666666 3343332  4566666666666655555666666666666666666533221  455566666


Q ss_pred             eCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcc
Q 003200          633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV  712 (840)
Q Consensus       633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  712 (840)
                      ++++|+++ .+|..+. .+++|++|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|          
T Consensus        83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------  150 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL----------  150 (290)
T ss_dssp             ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------
T ss_pred             ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC----------
Confidence            66666655 4444443 45555555555555555555555555555555555555553333334444433          


Q ss_pred             cccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200          713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       713 ~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                               +.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus       151 ---------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          151 ---------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ---------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ---------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence                     55555555555333333444555555555555555 44444445555555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.7e-23  Score=215.68  Aligned_cols=209  Identities=22%  Similarity=0.219  Sum_probs=177.7

Q ss_pred             CCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200          553 ETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL  632 (840)
Q Consensus       553 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  632 (840)
                      .+++|+.|++++|.++..  ..+..+++|++|++++|++++.  ..+..+++|++|++++|++++..+..+.++++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            357888999999888743  3578889999999999998863  468888999999999999987777778899999999


Q ss_pred             eCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcc
Q 003200          633 DVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV  712 (840)
Q Consensus       633 ~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  712 (840)
                      ++++|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|          
T Consensus       115 ~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------  183 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL----------  183 (272)
T ss_dssp             ECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------
T ss_pred             ECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC----------
Confidence            9999999866555555 78999999999999998888888899999999999999997777677777776          


Q ss_pred             cccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCC
Q 003200          713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTF  792 (840)
Q Consensus       713 ~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  792 (840)
                               +.|++++|++++..+..+..+++|+.|++++|.+.+.       +++|+.|+++.|+++|.+|..++.+..
T Consensus       184 ---------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          184 ---------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             ---------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             ---------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence                     8999999999988888889999999999999998854       457899999999999999999887764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=1.5e-24  Score=233.81  Aligned_cols=236  Identities=18%  Similarity=0.204  Sum_probs=105.7

Q ss_pred             cccEEeccCCcCccccC----ccccCCC-CcCEEEccCCcCCCCCCcccCCC-----CcccEEEccCCcCcCCCCccc--
Q 003200          556 SLEGLKLTDNYLQGEIP----DCWMSYQ-NLKVLKLSNNKFSGNLPNSLGSI-----TSLVWLYLRKNRLSGKIPISL--  623 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~l--  623 (840)
                      +|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+     ++|++|++++|++++..+..+  
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            35555555555544333    3444444 45555555555554444433332     455555555555544433322  


Q ss_pred             --ccC-CCCcEEeCCCCcccccCChhhhhc----cCCccEEEccCCcccccCC----ccccCcc-ccceeeccccccccc
Q 003200          624 --KNC-TALASLDVDENEFVGNIPTWFGER----FSRMLVLILRSNQFHGPLP----KTICDLA-FLQILDLADNNLSGA  691 (840)
Q Consensus       624 --~~l-~~L~~L~ls~N~l~~~~p~~~~~~----l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~  691 (840)
                        ..+ ++|++|++++|++++..+..+...    .++|++|++++|.+++..+    ..+..++ +|++|++++|++++.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence              222 455555555555544433333211    1355555555555543222    2222332 555555555555544


Q ss_pred             CCccccccccCcccccccCcccccccC-CcceEEeCCCCccccc----CcccccC-CCCCCeEeCCCCcccccCC----c
Q 003200          692 IPKCISNLTGMVTVKSFTGSVVYREIL-PLVSLLDISRNNFSGE----ILSEVTN-LKALQSINFSFNTFTGRIP----E  761 (840)
Q Consensus       692 ~p~~~~~l~~L~~l~~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~----~~~~l~~-l~~L~~L~Ls~N~l~~~~p----~  761 (840)
                      .+..+...-               ... ++|+.|||++|.+++.    ++..+.. .++|++|+|++|++++..+    .
T Consensus       183 ~~~~l~~~l---------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  247 (362)
T 3goz_A          183 NCAELAKFL---------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL  247 (362)
T ss_dssp             CHHHHHHHH---------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             hHHHHHHHH---------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence            333222110               001 1235555555555532    2333333 2355555555555554333    2


Q ss_pred             chhccCCCCeEeCCCCccccc-------CCccccCCCCCCeEeccCCccccc
Q 003200          762 SIGTMRALESVDFSVNQLSGE-------IPQSMSSLTFLNHLNLSNNNLTGK  806 (840)
Q Consensus       762 ~l~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~ls~N~l~g~  806 (840)
                      .+..+++|++|++++|++.+.       +++.+..+++|++||+++|++.+.
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            223445555555555553221       222344555555555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.5e-22  Score=210.24  Aligned_cols=203  Identities=20%  Similarity=0.182  Sum_probs=158.1

Q ss_pred             ccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCc
Q 003200          575 WMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRM  654 (840)
Q Consensus       575 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L  654 (840)
                      +.++++++++++++|.++ .+|..+.  +.++.|++++|++++..+..+.++++|++|++++|.+++..+.   ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcC
Confidence            566778888888888887 4555443  6788888888888877777888888888888888888754332   267888


Q ss_pred             cEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc
Q 003200          655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE  734 (840)
Q Consensus       655 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  734 (840)
                      ++|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+++|                   +.|++++|++++.
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------~~L~L~~N~l~~~  139 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------QELYLKGNELKTL  139 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-------------------CEEECTTSCCCCC
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-------------------CEEECCCCCCCcc
Confidence            88888888887 566777788888888888888886666677777666                   7888888888876


Q ss_pred             CcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 003200          735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT  804 (840)
Q Consensus       735 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  804 (840)
                      .+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++ .+|..+..+.+|+.+++++|++.
T Consensus       140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            6666778888888888888888655566778888888888888888 67777777888888888888775

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.8e-23  Score=220.24  Aligned_cols=205  Identities=21%  Similarity=0.244  Sum_probs=129.5

Q ss_pred             CcccEEeccCCcCccccCccc--cCCCCcCEEEccCCcCCCCCC----cccCCCCcccEEEccCCcCcCCCCcccccCCC
Q 003200          555 KSLEGLKLTDNYLQGEIPDCW--MSYQNLKVLKLSNNKFSGNLP----NSLGSITSLVWLYLRKNRLSGKIPISLKNCTA  628 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  628 (840)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|++++..+    ..+..+++|++|++++|++.+..|..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            446666666666666655555  556666666666666665433    22234555666666666665555555555555


Q ss_pred             CcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcc----ccccccCcc
Q 003200          629 LASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKC----ISNLTGMVT  704 (840)
Q Consensus       629 L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~  704 (840)
                      |++|++++|++.+....                     ..+..+..+++|++|++++|+++ .+|..    +..+++|  
T Consensus       171 L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L--  226 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQP--  226 (310)
T ss_dssp             CCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCC--
T ss_pred             CCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCC--
Confidence            55555555554321000                     01122345677777777777775 22221    2333444  


Q ss_pred             cccccCcccccccCCcceEEeCCCCcccccCcccccCC---CCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200          705 VKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNL---KALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       705 l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                                       ++|||++|++++.+|..+..+   ++|++|+|++|+++ .+|..+.  ++|++|||++|++++
T Consensus       227 -----------------~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          227 -----------------HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             -----------------SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             -----------------CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence                             778888888887777777666   58888888888888 6777664  788888888888885


Q ss_pred             cCCccccCCCCCCeEeccCCcccc
Q 003200          782 EIPQSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       782 ~~p~~l~~l~~L~~L~ls~N~l~g  805 (840)
                      . |. +..+++|++|++++|+++.
T Consensus       287 ~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          287 A-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             C-ch-hhhCCCccEEECcCCCCCC
Confidence            3 43 5777888888888888864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=4e-23  Score=217.53  Aligned_cols=197  Identities=20%  Similarity=0.252  Sum_probs=146.1

Q ss_pred             CcccEEEccCCcCcCCCCccc--ccCCCCcEEeCCCCcccccCC----hhhhhccCCccEEEccCCcccccCCccccCcc
Q 003200          603 TSLVWLYLRKNRLSGKIPISL--KNCTALASLDVDENEFVGNIP----TWFGERFSRMLVLILRSNQFHGPLPKTICDLA  676 (840)
Q Consensus       603 ~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~ls~N~l~~~~p----~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~  676 (840)
                      ++|++|++++|++++..|..+  ..+++|++|++++|++.+..+    ..+. .+++|++|++++|++.+..|..+..++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCC
Confidence            345555555555555555555  555666666666666655444    2233 578888888888888888888899999


Q ss_pred             ccceeeccccccccc--C--CccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcc----cccCCCCCCeE
Q 003200          677 FLQILDLADNNLSGA--I--PKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS----EVTNLKALQSI  748 (840)
Q Consensus       677 ~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~----~l~~l~~L~~L  748 (840)
                      +|++|++++|++.+.  +  +..+..+++|                   ++|++++|+++. ++.    .++.+++|++|
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L  229 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAI-------------------QNLALRNTGMET-PTGVCAALAAAGVQPHSL  229 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCC-------------------CSCBCCSSCCCC-HHHHHHHHHHHTCCCSSE
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCC-------------------CEEECCCCCCCc-hHHHHHHHHhcCCCCCEE
Confidence            999999999998753  2  2233555555                   999999999973 333    25788999999


Q ss_pred             eCCCCcccccCCcchhcc---CCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCCCcCCCcCcCCCCCC
Q 003200          749 NFSFNTFTGRIPESIGTM---RALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN  824 (840)
Q Consensus       749 ~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn  824 (840)
                      +|++|++++.+|..++.+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |....+..+....+.||
T Consensus       230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSST
T ss_pred             ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCC
Confidence            999999998889888887   69999999999999 7888875  7999999999999983 33344555555555555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=2.4e-22  Score=204.60  Aligned_cols=179  Identities=18%  Similarity=0.204  Sum_probs=100.4

Q ss_pred             CcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEc
Q 003200          580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLIL  659 (840)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l  659 (840)
                      ..++++++++.++ .+|..+.  +.++.|++++|++++..+..+.++++|++|++++|.+++..|..+. .+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEEC
Confidence            4677788888777 4555554  5677777777777776666777777777777777777654444443 4555666666


Q ss_pred             cCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccc
Q 003200          660 RSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV  739 (840)
Q Consensus       660 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l  739 (840)
                      ++|++++..+..+..+++|++|++++|++++..+..+..+++|                   +.|+|++|++++..+..+
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~~~~~~~  151 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL-------------------KELRLNTNQLQSIPAGAF  151 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------------CEEECCSSCCCCCCTTTT
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc-------------------cEEECcCCcCCccCHHHc
Confidence            6665555555555555555555555555553333333433333                   445555554443333344


Q ss_pred             cCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200          740 TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       740 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                      +.+++|++|+|++|++++..|..|..+++|++|++++|++.+
T Consensus       152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            444444444444444444444444444444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=4.5e-24  Score=230.04  Aligned_cols=242  Identities=21%  Similarity=0.214  Sum_probs=175.5

Q ss_pred             CCCcEEEccCCcCcccCCchhhhccCCCC-cccEEeccCCcCccccCccccCC-----CCcCEEEccCCcCCCCCCccc-
Q 003200          527 SNLVYLDFSNNSFSGSISHFLCYRVNETK-SLEGLKLTDNYLQGEIPDCWMSY-----QNLKVLKLSNNKFSGNLPNSL-  599 (840)
Q Consensus       527 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l-  599 (840)
                      .+|++|++++|.+++..+..+...+..++ +|++|++++|.+++..+..+..+     ++|++|++++|++++..+..+ 
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            45777888888877776655556666677 88899999988887766666554     889999999998887666543 


Q ss_pred             ---CCC-CcccEEEccCCcCcCCCCcccc----c-CCCCcEEeCCCCcccccCChhhhh---cc-CCccEEEccCCcccc
Q 003200          600 ---GSI-TSLVWLYLRKNRLSGKIPISLK----N-CTALASLDVDENEFVGNIPTWFGE---RF-SRMLVLILRSNQFHG  666 (840)
Q Consensus       600 ---~~l-~~L~~L~L~~n~l~~~~p~~l~----~-l~~L~~L~ls~N~l~~~~p~~~~~---~l-~~L~~L~l~~n~l~~  666 (840)
                         ..+ ++|++|++++|++++..+..+.    . .++|++|++++|.+.+..+..+..   .. ++|++|++++|++++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence               334 7899999999998866655443    3 368999999999988654443321   33 389999999999987


Q ss_pred             cCCcccc----Cc-cccceeeccccccccc----CCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcc
Q 003200          667 PLPKTIC----DL-AFLQILDLADNNLSGA----IPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS  737 (840)
Q Consensus       667 ~~p~~l~----~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~  737 (840)
                      ..+..+.    .+ ++|+.||+++|.+++.    ++..+...                  .++|+.|||++|++++..+.
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~------------------~~~L~~L~Ls~N~l~~~~~~  243 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI------------------PNHVVSLNLCLNCLHGPSLE  243 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS------------------CTTCCEEECCSSCCCCCCHH
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC------------------CCCceEEECcCCCCCcHHHH
Confidence            7765444    34 5899999999998853    22233221                  23458999999999876553


Q ss_pred             ----cccCCCCCCeEeCCCCccccc-------CCcchhccCCCCeEeCCCCcccccCCcc
Q 003200          738 ----EVTNLKALQSINFSFNTFTGR-------IPESIGTMRALESVDFSVNQLSGEIPQS  786 (840)
Q Consensus       738 ----~l~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  786 (840)
                          .+..+++|++|++++|.+.+.       ++..+..+++|+.||+++|++.+..|..
T Consensus       244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred             HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence                346778999999999985433       3446778889999999999998764443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=8.5e-24  Score=230.40  Aligned_cols=239  Identities=21%  Similarity=0.306  Sum_probs=194.3

Q ss_pred             CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCC---cCccccCccc-------cCCCCcCEEEccCCcCCC--
Q 003200          526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDN---YLQGEIPDCW-------MSYQNLKVLKLSNNKFSG--  593 (840)
Q Consensus       526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n---~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~--  593 (840)
                      .++|++|++++|.+.+..+..++..+..+++|++|++++|   ++++.+|..+       ..+++|++|++++|.+++  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4678888888888887777777777788999999999996   4455556554       688999999999999997  


Q ss_pred             --CCCcccCCCCcccEEEccCCcCcCCCCccc----ccC---------CCCcEEeCCCCccc-ccCC---hhhhhccCCc
Q 003200          594 --NLPNSLGSITSLVWLYLRKNRLSGKIPISL----KNC---------TALASLDVDENEFV-GNIP---TWFGERFSRM  654 (840)
Q Consensus       594 --~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~ls~N~l~-~~~p---~~~~~~l~~L  654 (840)
                        .++..+..+++|++|+|++|.++...+..+    ..+         ++|++|++++|++. +.+|   ..+. .+++|
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L  189 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLL  189 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCc
Confidence              366678889999999999999975444433    344         89999999999997 3444   2343 68899


Q ss_pred             cEEEccCCcccc-----cCCccccCccccceeeccccccc----ccCCccccccccCcccccccCcccccccCCcceEEe
Q 003200          655 LVLILRSNQFHG-----PLPKTICDLAFLQILDLADNNLS----GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLD  725 (840)
Q Consensus       655 ~~L~l~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~  725 (840)
                      ++|++++|+++.     ..|..+..+++|+.|++++|.++    +.+|..+..+++|                   +.|+
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L-------------------~~L~  250 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL-------------------RELG  250 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC-------------------CEEE
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc-------------------CEEE
Confidence            999999999973     34557889999999999999996    5677777776666                   9999


Q ss_pred             CCCCccccc----Cccccc--CCCCCCeEeCCCCcccc----cCCcch-hccCCCCeEeCCCCcccccCC
Q 003200          726 ISRNNFSGE----ILSEVT--NLKALQSINFSFNTFTG----RIPESI-GTMRALESVDFSVNQLSGEIP  784 (840)
Q Consensus       726 Ls~N~l~~~----~~~~l~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~p  784 (840)
                      |++|.+++.    ++..+.  .+++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999999876    566663  49999999999999997    488888 678999999999999997764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.4e-23  Score=224.31  Aligned_cols=240  Identities=19%  Similarity=0.188  Sum_probs=165.2

Q ss_pred             CCCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCC--CCCCEEeCCCCCCCCCCccccccCCCCCcEE
Q 003200           59 DGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDL--KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYL  136 (840)
Q Consensus        59 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L  136 (840)
                      ...|.+|+++.|+  ...++.++++++       .+.   +..+..+  +++++|++++|.+.+. .+. +..+++|++|
T Consensus        33 ~~vc~~W~~~~~~--~~~~~~l~l~~~-------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L   98 (336)
T 2ast_B           33 SGVCKRWYRLASD--ESLWQTLDLTGK-------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHM   98 (336)
T ss_dssp             TSSCHHHHHHHTC--STTSSEEECTTC-------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEE
T ss_pred             HHHHHHHHHHhcC--chhheeeccccc-------cCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEE
Confidence            3567789999986  345778888875       333   3445666  7899999999988864 343 5678999999


Q ss_pred             eccCCcccCC-CCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCc-CCCCCcchhhhcCCCCCCCEEEcCC
Q 003200          137 NLSDTQFVGM-IPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSV-NLSKASDWLMATNTLPSLLELRLSN  214 (840)
Q Consensus       137 ~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~l~~L~~L~L~~  214 (840)
                      ++++|.+++. +|..+.++++|++|++++|.+....+..+.++++|++|++++| .+++ ...+..+..+++|++|++++
T Consensus        99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~  177 (336)
T 2ast_B           99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSW  177 (336)
T ss_dssp             ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCC
T ss_pred             EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCC
Confidence            9999988765 7777888899999999999877666667788888888888888 4543 12344455677777777777


Q ss_pred             C-CCCcCCCCCCCCCCcccCCC-CCCEEECcCC--CCC-CCCcccccCCCCCcEEEcccCc-cccccchhhhcCCCCcEE
Q 003200          215 C-SLHHFPTLASPIPRGLQNLT-SLKHLDLDSN--HFN-SSIPDWLYKFSPLECLNLRNNS-LQGTISDAIGNLTSVSWL  288 (840)
Q Consensus       215 n-~l~~~~~~~~~l~~~l~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L  288 (840)
                      | .+++..     ++..+..++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|
T Consensus       178 ~~~l~~~~-----~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          178 CFDFTEKH-----VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             CTTCCHHH-----HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             CCCcChHH-----HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence            7 665421     114466677 7777777777  344 3445556667777777777776 555666667777777777


Q ss_pred             ecccccCccccCcccccCCCCCcEEEcCCC
Q 003200          289 DLSINIGLQGRIPRSMANFCNLKSVNLRGV  318 (840)
Q Consensus       289 ~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~  318 (840)
                      ++++|..........+..+++|+.|++++|
T Consensus       253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             eCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            777743333332334566666666666666

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=5.5e-22  Score=200.40  Aligned_cols=196  Identities=15%  Similarity=0.237  Sum_probs=111.1

Q ss_pred             CcCEEEccCCcCCCCCCcccCCCCcccEEEccCCc-CcCCCCcccccCCCCcEEeCCC-CcccccCChhhhhccCCccEE
Q 003200          580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR-LSGKIPISLKNCTALASLDVDE-NEFVGNIPTWFGERFSRMLVL  657 (840)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ls~-N~l~~~~p~~~~~~l~~L~~L  657 (840)
                      +|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..+. .+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-CCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEE
Confidence            45555555555554444445555555555555554 4433334455555555555554 555433333333 45555555


Q ss_pred             EccCCcccccCCccccCccccc---eeecccc-cccccCCccccccccCcccccccCcccccccCCcce-EEeCCCCccc
Q 003200          658 ILRSNQFHGPLPKTICDLAFLQ---ILDLADN-NLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVS-LLDISRNNFS  732 (840)
Q Consensus       658 ~l~~n~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~-~L~Ls~N~l~  732 (840)
                      ++++|++++ +|. +..+++|+   .|++++| ++++..+..+.++++|                   + .|++++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------~~~L~l~~n~l~  169 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------TLTLKLYNNGFT  169 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------EEEEECCSCCCC
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------eeEEEcCCCCCc
Confidence            555555554 333 55555555   6667666 6664444456655555                   6 6777777776


Q ss_pred             ccCcccccCCCCCCeEeCCCCc-ccccCCcchhcc-CCCCeEeCCCCcccccCCccccCCCCCCeEeccCC
Q 003200          733 GEILSEVTNLKALQSINFSFNT-FTGRIPESIGTM-RALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNN  801 (840)
Q Consensus       733 ~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  801 (840)
                       .+|......++|+.|++++|+ +++..+..|..+ ++|++||+++|+++ .+|..  .+++|+.|+++++
T Consensus       170 -~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             -EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred             -ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence             344433333677777777774 775556667777 77777777777777 34443  4567777777765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=3.7e-23  Score=221.09  Aligned_cols=251  Identities=18%  Similarity=0.229  Sum_probs=196.9

Q ss_pred             CCcEEEccCCcCcccCCchhhhccCCC--CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCC-CCcccCCCCc
Q 003200          528 NLVYLDFSNNSFSGSISHFLCYRVNET--KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGN-LPNSLGSITS  604 (840)
Q Consensus       528 ~L~~L~l~~n~~~~~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~  604 (840)
                      .++.++++++.+..   ..+    ..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++
T Consensus        48 ~~~~l~l~~~~~~~---~~~----~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~  119 (336)
T 2ast_B           48 LWQTLDLTGKNLHP---DVT----GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK  119 (336)
T ss_dssp             TSSEEECTTCBCCH---HHH----HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred             hheeeccccccCCH---HHH----HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence            36677787777652   222    223  6889999999999877665 55789999999999998865 6777888999


Q ss_pred             ccEEEccCCcCcCCCCcccccCCCCcEEeCCCC-ccccc-CChhhhhccCCccEEEccCC-ccccc-CCccccCcc-ccc
Q 003200          605 LVWLYLRKNRLSGKIPISLKNCTALASLDVDEN-EFVGN-IPTWFGERFSRMLVLILRSN-QFHGP-LPKTICDLA-FLQ  679 (840)
Q Consensus       605 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N-~l~~~-~p~~~~~~l~~L~~L~l~~n-~l~~~-~p~~l~~l~-~L~  679 (840)
                      |++|++++|++++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|+
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            999999999998888888999999999999999 67653 555554 7899999999999 88764 567778888 999


Q ss_pred             eeecccc--ccc-ccCCccccccccCcccccccCcccccccCCcceEEeCCCCc-ccccCcccccCCCCCCeEeCCCCc-
Q 003200          680 ILDLADN--NLS-GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN-FSGEILSEVTNLKALQSINFSFNT-  754 (840)
Q Consensus       680 ~L~Ls~N--~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~N~-  754 (840)
                      .|++++|  .++ +.+|..+..+++|                   +.|++++|. +++..+..+..+++|+.|++++|. 
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L-------------------~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNL-------------------VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTC-------------------SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCC-------------------CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence            9999999  454 3455555555555                   999999999 788888899999999999999995 


Q ss_pred             ccccCCcchhccCCCCeEeCCCCcccccCCccccCC-CCCCeEeccCCcccccCCCC
Q 003200          755 FTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL-TFLNHLNLSNNNLTGKIPLS  810 (840)
Q Consensus       755 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~  810 (840)
                      +.......++++++|++|++++| ++.   +.+..+ ..++.|++++|+++|..|..
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            33222236889999999999999 432   234444 34788889999999988864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.2e-21  Score=197.96  Aligned_cols=198  Identities=15%  Similarity=0.146  Sum_probs=160.3

Q ss_pred             CcccEEeccCCcCccccCccccCCCCcCEEEccCCc-CCCCCCcccCCCCcccEEEccC-CcCcCCCCcccccCCCCcEE
Q 003200          555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK-FSGNLPNSLGSITSLVWLYLRK-NRLSGKIPISLKNCTALASL  632 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L  632 (840)
                      +++++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            467888888888887766678888888888888886 7766666788888888888888 88887666788888888888


Q ss_pred             eCCCCcccccCChhhhhccCCcc---EEEccCC-cccccCCccccCccccc-eeecccccccccCCccccccccCccccc
Q 003200          633 DVDENEFVGNIPTWFGERFSRML---VLILRSN-QFHGPLPKTICDLAFLQ-ILDLADNNLSGAIPKCISNLTGMVTVKS  707 (840)
Q Consensus       633 ~ls~N~l~~~~p~~~~~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  707 (840)
                      ++++|++++ +|. +. .+++|+   +|++++| .+++..+..|..+++|+ .|++++|+++ .+|......++|     
T Consensus       111 ~l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L-----  181 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL-----  181 (239)
T ss_dssp             EEEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE-----
T ss_pred             eCCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC-----
Confidence            888888875 666 44 677777   9999999 88888888899999999 9999999998 666543332445     


Q ss_pred             ccCcccccccCCcceEEeCCCCc-ccccCcccccCC-CCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCc
Q 003200          708 FTGSVVYREILPLVSLLDISRNN-FSGEILSEVTNL-KALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQ  778 (840)
Q Consensus       708 ~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  778 (840)
                                    +.|++++|+ +++..+..|.++ ++|+.|++++|+++ .+|..  .+++|+.|+++++.
T Consensus       182 --------------~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          182 --------------DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             --------------EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             --------------CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence                          899999995 987777788999 99999999999999 45554  67899999998874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=6.4e-21  Score=193.98  Aligned_cols=180  Identities=21%  Similarity=0.248  Sum_probs=103.4

Q ss_pred             cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200          556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD  635 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls  635 (840)
                      ..++++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3455666666655 3343332  456666666666665555556666666666666666665555556666666666666


Q ss_pred             CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200          636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR  715 (840)
Q Consensus       636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  715 (840)
                      +|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|             
T Consensus        92 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------  157 (251)
T 3m19_A           92 NNQLASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL-------------  157 (251)
T ss_dssp             TSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcccccChhHhc-ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC-------------
Confidence            6666533333333 55666666666666665555555566666666666666654444445554444             


Q ss_pred             ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200          716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR  758 (840)
Q Consensus       716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  758 (840)
                            +.|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus       158 ------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          158 ------QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ------CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                  5666666666655555556666666666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.7e-21  Score=202.85  Aligned_cols=191  Identities=20%  Similarity=0.295  Sum_probs=101.5

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      +++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|++++.  ..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            4566666666666653 33 45666666666666666664333  66666666666666666532  2456666666666


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      +++|++++ ++. +. .+++|++|++++|++++..+  +..+++|+.|++++|++++ ++. +..+++|           
T Consensus       114 l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L-----------  175 (308)
T 1h6u_A          114 LTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKL-----------  175 (308)
T ss_dssp             CTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTC-----------
T ss_pred             CCCCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCC-----------
Confidence            66666653 232 22 45555555555555554332  4455555555555555542 221 3333333           


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                              +.|++++|++++..+  +..+++|+.|++++|++++..|  +..+++|++|++++|+++
T Consensus       176 --------~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          176 --------TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             --------CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             --------CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence                    555555555543222  4455555555555555553221  445555555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=3e-21  Score=202.56  Aligned_cols=191  Identities=20%  Similarity=0.295  Sum_probs=93.1

Q ss_pred             CCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcc
Q 003200          526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSL  605 (840)
Q Consensus       526 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  605 (840)
                      +++|++|++++|.+... +     .+..+++|++|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|
T Consensus        40 l~~L~~L~l~~~~i~~l-~-----~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L  109 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-E-----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI  109 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred             cCCcCEEEeeCCCccCc-h-----hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence            34555555555554432 1     12334555555555555553322  55555555555555555532  235555555


Q ss_pred             cEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccc
Q 003200          606 VWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLAD  685 (840)
Q Consensus       606 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  685 (840)
                      ++|++++|++++. + .+..+++|++|++++|++++..+  +. .+++|+.|++++|++++..+  +..+++|+.|++++
T Consensus       110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LA-GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD  182 (308)
T ss_dssp             CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--cc-CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence            5555555555432 2 25555555555555555543222  22 45555555555555554322  45555555555555


Q ss_pred             ccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccc
Q 003200          686 NNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFT  756 (840)
Q Consensus       686 N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~  756 (840)
                      |++++..+  +..+++|                   +.|++++|++++..  .+..+++|+.|++++|+++
T Consensus       183 n~l~~~~~--l~~l~~L-------------------~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          183 NKISDISP--LASLPNL-------------------IEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             SCCCCCGG--GGGCTTC-------------------CEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CccCcChh--hcCCCCC-------------------CEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            55542221  3333222                   55555555555332  2455555555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=6e-20  Score=196.62  Aligned_cols=122  Identities=12%  Similarity=0.123  Sum_probs=53.7

Q ss_pred             cEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccC-ccccCCCCcCE-EEc
Q 003200          509 LFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP-DCWMSYQNLKV-LKL  586 (840)
Q Consensus       509 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L  586 (840)
                      ++++.++++++......++++++|++++|+++...+.    .+.++++|++|+|++|++.+.+| .+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            3455555555543322334455555555554433222    12334445555555554433332 23444444433 333


Q ss_pred             cCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200          587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV  634 (840)
Q Consensus       587 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  634 (840)
                      ++|+++...|..|..+++|++|++++|++++..+..+....++..+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence            344444444444444455555555555444333333333344444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=4e-20  Score=207.78  Aligned_cols=189  Identities=28%  Similarity=0.374  Sum_probs=137.0

Q ss_pred             CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200          555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV  634 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  634 (840)
                      .+++.|++++|.+++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +.+  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            378888888888886 56554  367888888888888 455   346788888888888886 666 554  7888888


Q ss_pred             CCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccc
Q 003200          635 DENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVY  714 (840)
Q Consensus       635 s~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  714 (840)
                      ++|++++ +|.    .+++|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|. +.  ++|            
T Consensus       128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L------------  182 (571)
T 3cvr_A          128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESL------------  182 (571)
T ss_dssp             CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTC------------
T ss_pred             CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCC------------
Confidence            8888875 665    36788888888888876 444   46778888888888774 565 44  444            


Q ss_pred             cccCCcceEEeCCCCcccccCcccccCCCCC-------CeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccc
Q 003200          715 REILPLVSLLDISRNNFSGEILSEVTNLKAL-------QSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSM  787 (840)
Q Consensus       715 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  787 (840)
                             +.|+|++|+|+ .+|. +..  +|       +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+
T Consensus       183 -------~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          183 -------EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             -------CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             -------CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence                   77888888877 5565 544  56       77888888877 577777777888888888888877777776


Q ss_pred             cCCC
Q 003200          788 SSLT  791 (840)
Q Consensus       788 ~~l~  791 (840)
                      ..++
T Consensus       251 ~~l~  254 (571)
T 3cvr_A          251 SQQT  254 (571)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=4.3e-20  Score=207.60  Aligned_cols=196  Identities=24%  Similarity=0.334  Sum_probs=120.3

Q ss_pred             CCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccE
Q 003200          528 NLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVW  607 (840)
Q Consensus       528 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  607 (840)
                      +++.|++++|.+++ +|..+      .++|+.|++++|.++ .+|   ..+++|++|++++|++++ +|. +..  +|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~  124 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKH  124 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCE
T ss_pred             CccEEEeCCCCCCc-cCHhH------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCE
Confidence            66677777777665 33222      246777777777776 445   335667777777777765 454 443  6777


Q ss_pred             EEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccc
Q 003200          608 LYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNN  687 (840)
Q Consensus       608 L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  687 (840)
                      |++++|++++ +|.   .+++|+.|++++|++++ +|.    .+++|++|++++|++++ +|. +.  ++|+.|++++|+
T Consensus       125 L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          125 LDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             EECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred             EECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence            7777777765 444   46677777777777764 554    35667777777777765 444 44  667777777777


Q ss_pred             ccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccC
Q 003200          688 LSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMR  767 (840)
Q Consensus       688 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  767 (840)
                      ++ .+|. +..  +|            ....+.++.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus       192 L~-~lp~-~~~--~L------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          192 LE-SLPA-VPV--RN------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CS-SCCC-CC----------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CC-chhh-HHH--hh------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            76 5554 332  11            011233466777777776 4666666677777777777777777776666654


Q ss_pred             C
Q 003200          768 A  768 (840)
Q Consensus       768 ~  768 (840)
                      .
T Consensus       255 ~  255 (571)
T 3cvr_A          255 A  255 (571)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=8.7e-20  Score=179.86  Aligned_cols=127  Identities=21%  Similarity=0.226  Sum_probs=58.0

Q ss_pred             EEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCc
Q 003200          559 GLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENE  638 (840)
Q Consensus       559 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~  638 (840)
                      .++.+++.++ .+|..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus        11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            3444444444 223222  2355555555555554444445555555555555555554434444555555555555555


Q ss_pred             ccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccc
Q 003200          639 FVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS  689 (840)
Q Consensus       639 l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  689 (840)
                      +++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus        88 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           88 LQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            5422222222 3444444444444444333333344444444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=5.9e-20  Score=181.06  Aligned_cols=175  Identities=16%  Similarity=0.148  Sum_probs=106.6

Q ss_pred             CEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccC
Q 003200          582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRS  661 (840)
Q Consensus       582 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~  661 (840)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..+.++++|++|++++|+++                     
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------   65 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---------------------   65 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------------------
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---------------------
Confidence            45556666555 233322  245566666666655444444555555555555555554                     


Q ss_pred             CcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccC
Q 003200          662 NQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTN  741 (840)
Q Consensus       662 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~  741 (840)
                          +..+..+..+++|++|++++|++++..+..+..+++|                   +.|++++|++++..+..+..
T Consensus        66 ----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------~~L~L~~N~l~~~~~~~~~~  122 (208)
T 2o6s_A           66 ----SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL-------------------KELALNTNQLQSLPDGVFDK  122 (208)
T ss_dssp             ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------------CEEECCSSCCCCCCTTTTTT
T ss_pred             ----ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC-------------------CEEEcCCCcCcccCHhHhcc
Confidence                3434444556666666666666664444445555544                   66677777666555555677


Q ss_pred             CCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCCC
Q 003200          742 LKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS  810 (840)
Q Consensus       742 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  810 (840)
                      +++|++|++++|++++..+..+..+++|++|++++|++.+.       ++.|++|+++.|.++|.+|..
T Consensus       123 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          123 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCT
T ss_pred             CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeecc
Confidence            77777777777777765555677777777777777777643       346777777778888877764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.2e-19  Score=194.24  Aligned_cols=241  Identities=15%  Similarity=0.123  Sum_probs=188.9

Q ss_pred             CcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCC-cccCCCCcccE
Q 003200          529 LVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP-NSLGSITSLVW  607 (840)
Q Consensus       529 L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~  607 (840)
                      -+.++.++++++.. |..+      .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| ..|.++++++.
T Consensus        11 ~~~v~C~~~~Lt~i-P~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X           11 NRVFLCQESKVTEI-PSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             TTEEEEESTTCCSC-CTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred             CCEEEecCCCCCcc-CcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence            35788888888854 4332      2579999999999997767789999999999999999977555 57888988765


Q ss_pred             -EEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccC-CcccccCCccccCcc-ccceeecc
Q 003200          608 -LYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRS-NQFHGPLPKTICDLA-FLQILDLA  684 (840)
Q Consensus       608 -L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~-~L~~L~Ls  684 (840)
                       +.+..|+++...|..|..+++|++|++++|++.+..+..+. ...++..+++.+ +++....+..+..+. .++.|+++
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence             66777999988889999999999999999999865555554 567788898865 677777777777765 68999999


Q ss_pred             cccccccCCccccccccCcccccccCcccccccCCcceEEeCCC-CcccccCc-ccccCCCCCCeEeCCCCcccccCCcc
Q 003200          685 DNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISR-NNFSGEIL-SEVTNLKALQSINFSFNTFTGRIPES  762 (840)
Q Consensus       685 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~  762 (840)
                      +|+++ .+|.......++                   +.+++++ |.++ .+| ..|..+++|++||+++|+++. +|..
T Consensus       163 ~N~i~-~i~~~~f~~~~L-------------------~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~  220 (350)
T 4ay9_X          163 KNGIQ-EIHNSAFNGTQL-------------------DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPSY  220 (350)
T ss_dssp             SSCCC-EECTTSSTTEEE-------------------EEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCSS
T ss_pred             ccccc-CCChhhccccch-------------------hHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cChh
Confidence            99998 566554444455                   8899986 5566 555 567999999999999999994 5542


Q ss_pred             hhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCc
Q 003200          763 IGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNN  802 (840)
Q Consensus       763 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  802 (840)
                        .+.+|+.|.+.++.-...+| .+.++++|+.++++++.
T Consensus       221 --~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          221 --GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             --SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             --hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence              34566666666655555788 48899999999998764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=9.1e-20  Score=180.86  Aligned_cols=155  Identities=17%  Similarity=0.222  Sum_probs=106.0

Q ss_pred             EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCC-ccccCccccceeecccccccccCCccccccccCccccccc
Q 003200          631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP-KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFT  709 (840)
Q Consensus       631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  709 (840)
                      .+++++|.++ .+|..+.   ..+++|++++|++++..| ..|..+++|+.|++++|++++..+..+.++++|       
T Consensus        15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-------   83 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-------   83 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-------
T ss_pred             EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-------
Confidence            4555555554 3444332   334566666666665543 345666777777777777775555566666555       


Q ss_pred             CcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccC
Q 003200          710 GSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSS  789 (840)
Q Consensus       710 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  789 (840)
                                  ++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+..
T Consensus        84 ------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  151 (220)
T 2v70_A           84 ------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT  151 (220)
T ss_dssp             ------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred             ------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence                        77777777777666666777777888888888887777777777888888888888887777777777


Q ss_pred             CCCCCeEeccCCcccccCC
Q 003200          790 LTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       790 l~~L~~L~ls~N~l~g~ip  808 (840)
                      +++|++|++++|++++..+
T Consensus       152 l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          152 LHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CTTCCEEECCSCCEECSGG
T ss_pred             CCCCCEEEecCcCCcCCCc
Confidence            8888888888887776554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.8e-18  Score=172.85  Aligned_cols=165  Identities=25%  Similarity=0.282  Sum_probs=117.9

Q ss_pred             CCCCCCCCccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCCCCCCCCCccccccCCCCCc
Q 003200           55 SWTGDGDCCTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLR  134 (840)
Q Consensus        55 ~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~  134 (840)
                      .|..+...|+|++|.|...                    ..+.+|..+.  ++|++|+|++|.++++ .|..+..+++|+
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~--------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~   67 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSK--------------------RHASVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLK   67 (229)
T ss_dssp             CCCCTTCEEETTEEECTTS--------------------CCSSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred             ccCCCCCEEeCCEeEccCC--------------------CcCccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCc
Confidence            4445788899999999631                    2234444333  7888889988888875 577788888888


Q ss_pred             EEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCC
Q 003200          135 YLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSN  214 (840)
Q Consensus       135 ~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~  214 (840)
                      +|+|++|++.+..+..|.++++|++|++++|.++......|..+++|++|++++|+++.++                   
T Consensus        68 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-------------------  128 (229)
T 3e6j_A           68 ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-------------------  128 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-------------------
T ss_pred             EEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC-------------------
Confidence            8888888887666666788888888888888877666666666666666666666655432                   


Q ss_pred             CCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCcccccc
Q 003200          215 CSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTI  275 (840)
Q Consensus       215 n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  275 (840)
                                    ..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..
T Consensus       129 --------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          129 --------------RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             --------------TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             --------------cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence                          44566677777777777776555566677777777777777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.6e-18  Score=180.09  Aligned_cols=190  Identities=18%  Similarity=0.284  Sum_probs=130.0

Q ss_pred             cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200          556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD  635 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls  635 (840)
                      .+..+.+..+.+++..  .+..+++|++|++++|.+... + .+..+++|++|++++|++++..+  +.++++|++|+++
T Consensus        25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence            3444566666666543  245678889999999988854 3 47788889999999998886544  8888888888888


Q ss_pred             CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200          636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR  715 (840)
Q Consensus       636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  715 (840)
                      +|++++ +|. +. .+++|++|++++|++++.  ..+..+++|+.|++++|++++.  ..+..+++|             
T Consensus        99 ~n~l~~-~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-------------  158 (291)
T 1h6t_A           99 ENKVKD-LSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-------------  158 (291)
T ss_dssp             SSCCCC-GGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC-------------
T ss_pred             CCcCCC-Chh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC-------------
Confidence            888874 333 43 577777777777777653  3566677777777777777633  344444444             


Q ss_pred             ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200          716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                            +.|++++|++++..+  +..+++|+.|++++|++++ +|. +..+++|+.|++++|+++.
T Consensus       159 ------~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          159 ------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             ------CEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence                  667777777765433  6667777777777777763 343 6667777777777777664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=2.1e-18  Score=171.02  Aligned_cols=151  Identities=19%  Similarity=0.231  Sum_probs=86.8

Q ss_pred             EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC
Q 003200          631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG  710 (840)
Q Consensus       631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  710 (840)
                      .++++++.++ .+|..+.   ++++.|++++|++++..+..|..+++|+.|++++|++++..|..|.++++|        
T Consensus        15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L--------   82 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL--------   82 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC--------
T ss_pred             EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC--------
Confidence            3444444444 3443321   345555555555555555555556666666666666655555555555544        


Q ss_pred             cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200          711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL  790 (840)
Q Consensus       711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  790 (840)
                                 ++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+..+
T Consensus        83 -----------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  151 (220)
T 2v9t_B           83 -----------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL  151 (220)
T ss_dssp             -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -----------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence                       566666666664444445566666666666666666556666666666666666666665555556666


Q ss_pred             CCCCeEeccCCccc
Q 003200          791 TFLNHLNLSNNNLT  804 (840)
Q Consensus       791 ~~L~~L~ls~N~l~  804 (840)
                      ++|++|++++|++.
T Consensus       152 ~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          152 RAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             CCCCEEEeCCCCcC
Confidence            66666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.6e-18  Score=170.39  Aligned_cols=135  Identities=16%  Similarity=0.176  Sum_probs=83.3

Q ss_pred             cEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccccccc
Q 003200          630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFT  709 (840)
Q Consensus       630 ~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  709 (840)
                      ++|++++|++++..|...+..+++|++|++++|++++..+..|..+++|++|++++|++++..|..+..+++|       
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------  107 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL-------  107 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC-------
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC-------
Confidence            3444444444433332222244555555555555555555556666666666666666665555556555555       


Q ss_pred             CcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccC
Q 003200          710 GSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEI  783 (840)
Q Consensus       710 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  783 (840)
                                  ++|+|++|++++..|..+..+++|+.|+|++|++++..|..|..+++|++|++++|++.+..
T Consensus       108 ------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          108 ------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             ------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence                        66777777777666677777777777777777777666777777777777777777776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.5e-18  Score=180.14  Aligned_cols=188  Identities=23%  Similarity=0.382  Sum_probs=139.7

Q ss_pred             EEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEc
Q 003200          531 YLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYL  610 (840)
Q Consensus       531 ~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  610 (840)
                      .+.+..+.+.+..+      ...+++|+.|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|++|++
T Consensus        28 ~~~l~~~~~~~~~~------~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l   97 (291)
T 1h6t_A           28 KDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL   97 (291)
T ss_dssp             HHHTTCSCTTSEEC------HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             HHHhcCCCcccccc------hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence            34455555554332      12357788888888888754 3 47788888888888888886544  788888888888


Q ss_pred             cCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccc
Q 003200          611 RKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG  690 (840)
Q Consensus       611 ~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  690 (840)
                      ++|++++ +| .+..+++|++|++++|++++ ++ .+. .+++|+.|++++|++++.  ..+..+++|+.|++++|++++
T Consensus        98 ~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A           98 DENKVKD-LS-SLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             CSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            8888874 33 48888888888888888875 33 344 688888888888888865  567888888888888888885


Q ss_pred             cCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200          691 AIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR  758 (840)
Q Consensus       691 ~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  758 (840)
                      ..|  +..+++|                   +.|++++|.+++ ++ .+..+++|+.|++++|+++..
T Consensus       171 ~~~--l~~l~~L-------------------~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          171 IVP--LAGLTKL-------------------QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CGG--GTTCTTC-------------------CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             chh--hcCCCcc-------------------CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence            444  5555555                   888888888875 34 488888888888888888753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=6.2e-18  Score=168.87  Aligned_cols=154  Identities=21%  Similarity=0.267  Sum_probs=92.4

Q ss_pred             EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC
Q 003200          631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG  710 (840)
Q Consensus       631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  710 (840)
                      .++.+++.+. .+|..+   .++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..+..+++|        
T Consensus        23 ~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L--------   90 (229)
T 3e6j_A           23 TVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL--------   90 (229)
T ss_dssp             EEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred             EeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc--------
Confidence            3444444443 444432   2455555555555555555556666666666666666653333444554444        


Q ss_pred             cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200          711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL  790 (840)
Q Consensus       711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  790 (840)
                                 +.|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+
T Consensus        91 -----------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  158 (229)
T 3e6j_A           91 -----------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL  158 (229)
T ss_dssp             -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             -----------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence                       66666666666555555666667777777777766 566666667777777777777765555556666


Q ss_pred             CCCCeEeccCCcccccCC
Q 003200          791 TFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       791 ~~L~~L~ls~N~l~g~ip  808 (840)
                      ++|++|++++|++.+..+
T Consensus       159 ~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          159 SSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTCCEEECTTSCBCTTBG
T ss_pred             CCCCEEEeeCCCccCCcc
Confidence            777777777776665443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=2.3e-18  Score=184.99  Aligned_cols=177  Identities=22%  Similarity=0.190  Sum_probs=132.6

Q ss_pred             CEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccc-cCCCCcEEeCCCCcccccCChhhhhccCCccEEEcc
Q 003200          582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLK-NCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR  660 (840)
Q Consensus       582 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~  660 (840)
                      +.++++++.++ .+|..+.  ..++.|+|++|++++..+..+. ++++|++|++++|++++..+..+. .+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECC
Confidence            68899999888 4566554  4688899999998877777776 888888888888888866656565 67888888888


Q ss_pred             CCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccc-
Q 003200          661 SNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV-  739 (840)
Q Consensus       661 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l-  739 (840)
                      +|++++..+..|..+++|+.|+|++|++++..|..+..+++|                   +.|+|++|++++..+..+ 
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-------------------~~L~L~~N~l~~l~~~~~~  157 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL-------------------QKLYLSQNQISRFPVELIK  157 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-------------------CEEECCSSCCCSCCGGGTC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC-------------------CEEECCCCcCCeeCHHHhc
Confidence            888887777778888888888888888876667777776666                   778888888875443334 


Q ss_pred             --cCCCCCCeEeCCCCcccccCCcchhccCC--CCeEeCCCCcccc
Q 003200          740 --TNLKALQSINFSFNTFTGRIPESIGTMRA--LESVDFSVNQLSG  781 (840)
Q Consensus       740 --~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~  781 (840)
                        ..+++|+.|+|++|++++..+..+..++.  ++.|+|++|++..
T Consensus       158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence              56778888888888887655566777766  3778888887763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=6e-18  Score=181.79  Aligned_cols=181  Identities=24%  Similarity=0.224  Sum_probs=152.3

Q ss_pred             ccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccC-CCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200          557 LEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLG-SITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD  635 (840)
Q Consensus       557 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls  635 (840)
                      -+.++++++.++ .+|..+.  ..+++|+|++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|+++
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            368999999998 4666553  4689999999999988888887 89999999999999998888899999999999999


Q ss_pred             CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200          636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR  715 (840)
Q Consensus       636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  715 (840)
                      +|++++..+..+. .+++|++|++++|++++..|..|..+++|+.|+|++|++++..+..+..+..              
T Consensus        97 ~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~--------------  161 (361)
T 2xot_A           97 SNHLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK--------------  161 (361)
T ss_dssp             SSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------------------
T ss_pred             CCcCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc--------------
Confidence            9999866555555 7999999999999999999999999999999999999999543334422111              


Q ss_pred             ccCCcceEEeCCCCcccccCcccccCCCC--CCeEeCCCCcccc
Q 003200          716 EILPLVSLLDISRNNFSGEILSEVTNLKA--LQSINFSFNTFTG  757 (840)
Q Consensus       716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~Ls~N~l~~  757 (840)
                        +++|+.|||++|+|++..+..+..++.  ++.|+|++|.+..
T Consensus       162 --l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          162 --LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             --CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             --CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence              244499999999999777778888887  4899999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=3.7e-18  Score=194.25  Aligned_cols=126  Identities=25%  Similarity=0.387  Sum_probs=63.2

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      +++|+.|++++|.+... + .+..+++|+.|+|++|++++..+  +..+++|+.|+|++|++.+ +| .+..+++|+.|+
T Consensus        42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            44555555555555532 2 35555555555555555554333  5555555555555555543 22 455555555555


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG  690 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  690 (840)
                      +++|.+.+ ++ .+. .+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+.+
T Consensus       116 Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          116 LEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             ecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            55555543 22 222 345555555555555443  334444455555555554443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=7.4e-18  Score=191.77  Aligned_cols=186  Identities=22%  Similarity=0.268  Sum_probs=119.0

Q ss_pred             EEcccCcCCCCCCC-CCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCC
Q 003200          511 LSVNSNNMSGPLPL-VSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNN  589 (840)
Q Consensus       511 L~l~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  589 (840)
                      +.+..+.+.+..+. .+++|+.|++++|.+....      .+..+++|+.|+|++|.+++..|  +..+++|++|+|++|
T Consensus        26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HhccCCCcccccchhcCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            33444444443332 2566777777777766532      13456777777777777775544  667777777777777


Q ss_pred             cCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCC
Q 003200          590 KFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLP  669 (840)
Q Consensus       590 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p  669 (840)
                      .+++. + .+..+++|+.|+|++|++.+.  ..+..+++|+.|++++|++++.  ..+. .+++|+.|+|++|++.+..|
T Consensus        98 ~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           98 KIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS-RLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             CCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG-SCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc-ccCCCCEEECcCCcCCCchh
Confidence            77642 2 567777777777777777642  3567777777777777777643  3343 57777777777777776555


Q ss_pred             ccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc
Q 003200          670 KTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE  734 (840)
Q Consensus       670 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  734 (840)
                        +..+++|+.|+|++|++++ +| .+..+++|                   +.|+|++|++++.
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L-------------------~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNL-------------------DVLELFSQECLNK  212 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTC-------------------SEEECCSEEEECC
T ss_pred             --hccCCCCCEEECcCCCCCC-Ch-HHccCCCC-------------------CEEEccCCcCcCC
Confidence              6677777777777777764 22 34444444                   6777777777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.3e-17  Score=165.27  Aligned_cols=153  Identities=16%  Similarity=0.248  Sum_probs=91.4

Q ss_pred             CEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccC
Q 003200          582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRS  661 (840)
Q Consensus       582 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~  661 (840)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|++|++++|+++                     
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~---------------------   69 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---------------------   69 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---------------------
Confidence            45666666666 3444333  45666666666665544445555555555555555554                     


Q ss_pred             CcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccC
Q 003200          662 NQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTN  741 (840)
Q Consensus       662 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~  741 (840)
                          +..|..|.++++|+.|+|++|++++..+..+..+++|                   +.|+|++|++++..|..|..
T Consensus        70 ----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L-------------------~~L~L~~N~l~~~~~~~~~~  126 (220)
T 2v9t_B           70 ----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL-------------------QLLLLNANKINCLRVDAFQD  126 (220)
T ss_dssp             ----EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-------------------CEEECCSSCCCCCCTTTTTT
T ss_pred             ----CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC-------------------CEEECCCCCCCEeCHHHcCC
Confidence                4444555555666666666666653333334444444                   66666666666666666666


Q ss_pred             CCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200          742 LKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       742 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                      +++|+.|+|++|++++..+..|..+++|++|++++|++..
T Consensus       127 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            7777777777777776666666777777777777777653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.3e-17  Score=162.58  Aligned_cols=153  Identities=19%  Similarity=0.293  Sum_probs=102.3

Q ss_pred             CCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccc
Q 003200          626 CTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV  705 (840)
Q Consensus       626 l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  705 (840)
                      +++|+.|++++|.+. .+| .+. .+++|++|++++|.++.  +..+..+++|++|++++|++++..|..+..+++|   
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---  114 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL---  114 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC---
T ss_pred             cCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC---
Confidence            334444444444443 333 222 34455555555553332  2356667777788888887776667777766666   


Q ss_pred             ccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCc
Q 003200          706 KSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQ  785 (840)
Q Consensus       706 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  785 (840)
                                      +.|++++|++++..|..++.+++|++|++++|++.+.+| .+..+++|++|++++|++++ ++ 
T Consensus       115 ----------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-  175 (197)
T 4ezg_A          115 ----------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-  175 (197)
T ss_dssp             ----------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-
T ss_pred             ----------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-
Confidence                            788888888887778888888888888888888333566 58888888888888888885 44 


Q ss_pred             cccCCCCCCeEeccCCcccc
Q 003200          786 SMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       786 ~l~~l~~L~~L~ls~N~l~g  805 (840)
                      .+..+++|++|++++|++.+
T Consensus       176 ~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TGGGCSSCCEEEECBC----
T ss_pred             HhccCCCCCEEEeeCcccCC
Confidence            77888889999998888754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=1.2e-20  Score=213.55  Aligned_cols=202  Identities=18%  Similarity=0.161  Sum_probs=108.7

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      +++|+.|++++|.++ .+|..++.+++|++|++++|......|.           .+..+...+..|..+..+++|+.|+
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~L~  415 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKAVD  415 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhcccCc
Confidence            455666666666665 4555566666666666654431100000           0001123445566666666666666


Q ss_pred             -CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcc
Q 003200          634 -VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSV  712 (840)
Q Consensus       634 -ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  712 (840)
                       ++.|.+.            .|..+.+.+|.++...+      ..|+.|++++|.+++ +|. +..+++|          
T Consensus       416 ~l~~n~~~------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L----------  465 (567)
T 1dce_A          416 PMRAAYLD------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV----------  465 (567)
T ss_dssp             GGGHHHHH------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC----------
T ss_pred             chhhcccc------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC----------
Confidence             4544332            22233334444443211      135566666666653 443 5554444          


Q ss_pred             cccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccC-CccccCCC
Q 003200          713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEI-PQSMSSLT  791 (840)
Q Consensus       713 ~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~  791 (840)
                               +.|+|++|+++ .+|..++++++|+.|+|++|++++ +| .++.+++|++|+|++|++++.+ |..+..++
T Consensus       466 ---------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~  533 (567)
T 1dce_A          466 ---------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP  533 (567)
T ss_dssp             ---------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             ---------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence                     56666666666 556666666666666666666664 45 5666666666666666666554 66666666


Q ss_pred             CCCeEeccCCcccccCCC
Q 003200          792 FLNHLNLSNNNLTGKIPL  809 (840)
Q Consensus       792 ~L~~L~ls~N~l~g~ip~  809 (840)
                      +|+.|++++|++++.+|.
T Consensus       534 ~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          534 RLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             TCCEEECTTSGGGGSSSC
T ss_pred             CCCEEEecCCcCCCCccH
Confidence            666666666666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=2.2e-20  Score=211.43  Aligned_cols=187  Identities=19%  Similarity=0.250  Sum_probs=132.3

Q ss_pred             CCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCc-------------ccccCChhhhhccCCccEEE-ccCCcccc
Q 003200          601 SITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENE-------------FVGNIPTWFGERFSRMLVLI-LRSNQFHG  666 (840)
Q Consensus       601 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~-------------l~~~~p~~~~~~l~~L~~L~-l~~n~l~~  666 (840)
                      .+++|+.|+|++|+++ .+|..++++++|+.|++++|.             ..+..|..+. .+++|+.|+ ++.|.+  
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~-~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-YFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH-HHHHHHHHCGGGHHHH--
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH-HHHhcccCcchhhccc--
Confidence            3455666666666665 556666666666666665554             2333444443 344555544 333322  


Q ss_pred             cCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCC
Q 003200          667 PLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQ  746 (840)
Q Consensus       667 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  746 (840)
                               ..|+.+.+++|.+++..+                         ..|+.|+|++|++++ +|. ++.+++|+
T Consensus       423 ---------~~L~~l~l~~n~i~~l~~-------------------------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~  466 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKMEY-------------------------ADVRVLHLAHKDLTV-LCH-LEQLLLVT  466 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHH-------------------------TTCSEEECTTSCCSS-CCC-GGGGTTCC
T ss_pred             ---------chhhhhhhhcccccccCc-------------------------cCceEEEecCCCCCC-CcC-ccccccCc
Confidence                     234444455555542111                         124889999999996 676 99999999


Q ss_pred             eEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccC-CCC-CcCCCcCcCCCCCC
Q 003200          747 SINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKI-PLS-TQLQSFNASSFAGN  824 (840)
Q Consensus       747 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i-p~~-~~~~~~~~~~~~gn  824 (840)
                      .|+|++|+++ .+|..|+.+++|+.|+|++|++++ +| .+..+++|++|++++|++++.+ |.. +.+..+....+.||
T Consensus       467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             EeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            9999999999 899999999999999999999996 78 8999999999999999999986 654 55666666777788


Q ss_pred             CCCCCC
Q 003200          825 DLCGAP  830 (840)
Q Consensus       825 ~lcg~~  830 (840)
                      .+++.|
T Consensus       544 ~l~~~~  549 (567)
T 1dce_A          544 SLCQEE  549 (567)
T ss_dssp             GGGGSS
T ss_pred             cCCCCc
Confidence            776653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.2e-17  Score=170.41  Aligned_cols=169  Identities=15%  Similarity=0.227  Sum_probs=93.5

Q ss_pred             CCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEE
Q 003200          578 YQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVL  657 (840)
Q Consensus       578 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L  657 (840)
                      +.++..+++++|.+++..  .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+  +. .+++|+.|
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~-~l~~L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LK-DLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GT-TCSSCCEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hc-cCCCCCEE
Confidence            445666677777776432  4566677777777777776 334 56666777777777777664332  33 56666666


Q ss_pred             EccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcc
Q 003200          658 ILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS  737 (840)
Q Consensus       658 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~  737 (840)
                      ++++|++++..+  +.. ++|+.|++++|++++ ++ .+..+++|                   +.|++++|++++. + 
T Consensus        91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L-------------------~~L~Ls~N~i~~~-~-  144 (263)
T 1xeu_A           91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRD-TD-SLIHLKNL-------------------EILSIRNNKLKSI-V-  144 (263)
T ss_dssp             ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSB-SG-GGTTCTTC-------------------CEEECTTSCCCBC-G-
T ss_pred             ECCCCccCCcCc--ccc-CcccEEEccCCccCC-Ch-hhcCcccc-------------------cEEECCCCcCCCC-h-
Confidence            666666654322  112 555556666655553 22 23333333                   5555555555532 2 


Q ss_pred             cccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200          738 EVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       738 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                      .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++
T Consensus       145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            455555555555555555543  345555555555555555553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=1.3e-17  Score=161.43  Aligned_cols=130  Identities=19%  Similarity=0.280  Sum_probs=72.2

Q ss_pred             cEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCc-cccCccccceeecccccccccCCccccccccCcccccc
Q 003200          630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPK-TICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSF  708 (840)
Q Consensus       630 ~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  708 (840)
                      +.+++++|.++ .+|..+.   .++++|++++|++++..+. .+..+++|+.|++++|++++..|..+.++++|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            56677777664 5555433   2556666666666555443 35555555555555555555555555554444      


Q ss_pred             cCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccccc
Q 003200          709 TGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGE  782 (840)
Q Consensus       709 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  782 (840)
                                   +.|+|++|++++..+..|.++++|++|+|++|++++.+|..|+.+++|++|++++|++.+.
T Consensus        81 -------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           81 -------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             -------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             -------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence                         5555555555555555555555555555555555555555555555555555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=3.2e-18  Score=200.01  Aligned_cols=185  Identities=18%  Similarity=0.177  Sum_probs=85.0

Q ss_pred             CCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCcccc
Q 003200          594 NLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTIC  673 (840)
Q Consensus       594 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~  673 (840)
                      ..+..+..+..|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+. .+++|++|+|++|.|+ .+|..+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhc
Confidence            33455555666666666666665 45555556666666666666665 5565554 5666666666666666 4466666


Q ss_pred             CccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCC-CCeEeCCC
Q 003200          674 DLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKA-LQSINFSF  752 (840)
Q Consensus       674 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~Ls~  752 (840)
                      .+++|+.|+|++|.++ .+|..|.++++|                   +.|+|++|.+++.+|..+..+.. +..++|++
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L-------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~  350 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNL-------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRD  350 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTTC-------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCc-------------------cEEeCCCCccCCCChHHHhhcchhhhHHhhcc
Confidence            6666666666666665 555555555555                   56666666666666655544321 12356666


Q ss_pred             CcccccCCcchhccCCCCeEeCCCC--------cccccCCccccCCCCCCeEeccCCcccccCC
Q 003200          753 NTFTGRIPESIGTMRALESVDFSVN--------QLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       753 N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  808 (840)
                      |.+++.+|..      |+.|++++|        .+.+.++..+..+..+....+++|-+.+...
T Consensus       351 N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          351 NRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             CCCCCCCCCC-----------------------------------------------CCCGGGC
T ss_pred             CcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence            6666666543      344455555        3333334444555566666667776654433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=3.7e-17  Score=159.19  Aligned_cols=155  Identities=17%  Similarity=0.239  Sum_probs=94.1

Q ss_pred             cCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCcc
Q 003200          576 MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRML  655 (840)
Q Consensus       576 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~  655 (840)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..                         +++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~-------------------------l~~L~   91 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISG-------------------------LSNLE   91 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTT-------------------------CTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhc-------------------------CCCCC
Confidence            34455555555555555 233 3455555555555555433  1223333                         55555


Q ss_pred             EEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccC
Q 003200          656 VLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI  735 (840)
Q Consensus       656 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  735 (840)
                      +|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|                   +.|++++|++.+.+
T Consensus        92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L-------------------~~L~L~~n~~i~~~  152 (197)
T 4ezg_A           92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV-------------------NSIDLSYNGAITDI  152 (197)
T ss_dssp             EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC-------------------CEEECCSCTBCCCC
T ss_pred             EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC-------------------CEEEccCCCCcccc
Confidence            55555555555555566667777777777777776566666655555                   77777777622244


Q ss_pred             cccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200          736 LSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       736 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                      | .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       153 ~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          153 M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            4 57778888888888888884 44 67888888888888888763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=8.6e-18  Score=171.53  Aligned_cols=170  Identities=20%  Similarity=0.277  Sum_probs=124.8

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      +..+..++++++.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +.++++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            345666777777777443  46677788888888888774 34 57777888888888888875443  77788888888


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      +++|++++ +|...  . ++|+.|++++|++++.  ..+..+++|+.|++++|++++. | .+..+++|           
T Consensus        92 L~~N~l~~-l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L-----------  152 (263)
T 1xeu_A           92 VNRNRLKN-LNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL-----------  152 (263)
T ss_dssp             CCSSCCSC-CTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC-----------
T ss_pred             CCCCccCC-cCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCC-----------
Confidence            88888874 44322  2 7788888888888764  3577888888888888888743 3 45555555           


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR  758 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  758 (840)
                              +.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       153 --------~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          153 --------EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --------CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --------CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence                    8888888888865  6678888888888888888855

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=7.1e-18  Score=197.14  Aligned_cols=192  Identities=20%  Similarity=0.215  Sum_probs=119.6

Q ss_pred             EeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcc
Q 003200          560 LKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF  639 (840)
Q Consensus       560 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l  639 (840)
                      ++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|++
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence            334444444 55777888999999999999998 66767778899999999999998 8888899999999999999999


Q ss_pred             cccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCC
Q 003200          640 VGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILP  719 (840)
Q Consensus       640 ~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~  719 (840)
                      + .+|..+. .+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+...                 
T Consensus       283 ~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~-----------------  342 (727)
T 4b8c_D          283 T-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT-----------------  342 (727)
T ss_dssp             S-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH-----------------
T ss_pred             C-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh-----------------
Confidence            8 7888887 7899999999999987 668789999999999999999998888777654321                 


Q ss_pred             cceEEeCCCCcccccCcccccCCCCCCeEeCCCC--------cccccCCcchhccCCCCeEeCCCCcccc
Q 003200          720 LVSLLDISRNNFSGEILSEVTNLKALQSINFSFN--------TFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       720 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                       ...++|++|.+++.+|..      |+.|++++|        .+.+..+..+..+..++...+++|-+.+
T Consensus       343 -~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          343 -GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             -HHHHHHHHCCCCCCCCCC-----------------------------------------------CCCG
T ss_pred             -hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence             024678888888887764      455666666        4555555566677777788888888753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=5e-17  Score=172.36  Aligned_cols=96  Identities=16%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             CCCEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCC-EEEccCCccccccChhhhccCCCCCEEE
Q 003200          338 GLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLR-ELQIYDNKLNGTLSEFHFANLTKLSWFR  416 (840)
Q Consensus       338 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~i~~~~~~~l~~L~~L~  416 (840)
                      +|+.+++++|+++...+.+|..+++|+++++.+| +..+.+.+|.+|++|+ .+++.+ .+. .|+..+|.++++|+.++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEE
Confidence            5555555555555555555555555666655555 4444455555555555 555555 333 44444555555555555


Q ss_pred             ccCcccceeccCCCCCccCc
Q 003200          417 VGGNQLTFEVKHDWIPPFQL  436 (840)
Q Consensus       417 L~~n~l~~~~~~~~~~~~~L  436 (840)
                      +++|.++......|..+.+|
T Consensus       304 l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCC
T ss_pred             eCCCccCccchhhhcCCcch
Confidence            55555544443333333333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=1.9e-16  Score=153.26  Aligned_cols=132  Identities=20%  Similarity=0.245  Sum_probs=79.7

Q ss_pred             cEEEccCCcccccCCccccCccccceeecccccccccCCc-cccccccCcccccccCcccccccCCcceEEeCCCCcccc
Q 003200          655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPK-CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSG  733 (840)
Q Consensus       655 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  733 (840)
                      +.+++++|.++ .+|..+..  +++.|++++|++++..+. .+..+++|                   ++|+|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~   68 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL-------------------VKLELKRNQLTG   68 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------CEEECCSSCCCC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------CEEECCCCCCCC
Confidence            45666666664 34444322  566666666666644333 24454444                   666666666666


Q ss_pred             cCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCC
Q 003200          734 EILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       734 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  808 (840)
                      ..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|++++.+|..+..+++|++|++++|++++..|
T Consensus        69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            666666666666666666666666666666666666666666666666666666666666666666666665544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=2.6e-16  Score=166.86  Aligned_cols=220  Identities=10%  Similarity=0.066  Sum_probs=154.3

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCc----CcCCCCcccccCCCC
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR----LSGKIPISLKNCTAL  629 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L  629 (840)
                      +++|+.|++.+ .++.+.+.+|.+|++|+.+++++|.+..+.+.+|..+.++..+....+.    .......+|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            78888888888 7877777788889999999999988887777888887777777766532    222334566777777


Q ss_pred             c-EEeCCCCcccccCChhhhh---ccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccc
Q 003200          630 A-SLDVDENEFVGNIPTWFGE---RFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV  705 (840)
Q Consensus       630 ~-~L~ls~N~l~~~~p~~~~~---~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  705 (840)
                      + .+++....   .++..+..   ...++..+.+.++-...........+++|+.+++++|+++...+.+|.++++|   
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L---  252 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL---  252 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred             ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence            7 55554332   33333322   23445555555432111111111236788888888888885545577777777   


Q ss_pred             ccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCC-eEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC
Q 003200          706 KSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQ-SINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP  784 (840)
Q Consensus       706 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  784 (840)
                                      +.+++++| ++...+..|.++++|+ .+++.+ +++...+.+|.++++|+.+++++|+++..-+
T Consensus       253 ----------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          253 ----------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             ----------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             ----------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence                            88888887 7766677788888898 898888 7776677888899999999998888886666


Q ss_pred             ccccCCCCCCeEec
Q 003200          785 QSMSSLTFLNHLNL  798 (840)
Q Consensus       785 ~~l~~l~~L~~L~l  798 (840)
                      ..|.++++|+.++.
T Consensus       315 ~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          315 ELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTCTTCCCCEEEC
T ss_pred             hhhcCCcchhhhcc
Confidence            68888888888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.3e-15  Score=144.11  Aligned_cols=133  Identities=18%  Similarity=0.216  Sum_probs=89.0

Q ss_pred             CCccEEEccCCccc-ccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCc
Q 003200          652 SRMLVLILRSNQFH-GPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN  730 (840)
Q Consensus       652 ~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~  730 (840)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|                   +.|++++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-------------------~~L~Ls~N~   82 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL-------------------KKLELSENR   82 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC-------------------CEEEEESCC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC-------------------CEEECcCCc
Confidence            45666666666665 45566666667777777777776643  445544444                   777777777


Q ss_pred             ccccCcccccCCCCCCeEeCCCCcccccC-CcchhccCCCCeEeCCCCcccccCC---ccccCCCCCCeEeccCCcccc
Q 003200          731 FSGEILSEVTNLKALQSINFSFNTFTGRI-PESIGTMRALESVDFSVNQLSGEIP---QSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       731 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~g  805 (840)
                      +++.+|..+.++++|++|++++|++++.. +..+..+++|++|++++|++++..+   ..+..+++|++|++++|.+..
T Consensus        83 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            77666666666777777777777777432 2667777777777777777775444   367777777777777777643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.3e-15  Score=144.06  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=104.8

Q ss_pred             CCCcEEeCCCCccc-ccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccc
Q 003200          627 TALASLDVDENEFV-GNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTV  705 (840)
Q Consensus       627 ~~L~~L~ls~N~l~-~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  705 (840)
                      ++|++|++++|.++ +.+|..+. .+++|++|++++|.+++.  ..+..+++|+.|++++|++++.+|..+..+++|   
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL---   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred             ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence            56677777777766 56666544 567777777777777755  667778888888888888886677666666665   


Q ss_pred             ccccCcccccccCCcceEEeCCCCcccccC-cccccCCCCCCeEeCCCCcccccCC---cchhccCCCCeEeCCCCcccc
Q 003200          706 KSFTGSVVYREILPLVSLLDISRNNFSGEI-LSEVTNLKALQSINFSFNTFTGRIP---ESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       706 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                                      +.|++++|++++.. +..+..+++|+.|++++|++++..+   ..+..+++|++|++++|.+. 
T Consensus        98 ----------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-  160 (168)
T 2ell_A           98 ----------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-  160 (168)
T ss_dssp             ----------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-
T ss_pred             ----------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-
Confidence                            88899999888542 2778899999999999999996555   47889999999999999987 


Q ss_pred             cCCcc
Q 003200          782 EIPQS  786 (840)
Q Consensus       782 ~~p~~  786 (840)
                      .+|++
T Consensus       161 ~~~~~  165 (168)
T 2ell_A          161 EAPDS  165 (168)
T ss_dssp             BCCSS
T ss_pred             hcccc
Confidence            56654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1e-15  Score=141.66  Aligned_cols=129  Identities=19%  Similarity=0.214  Sum_probs=99.2

Q ss_pred             cCCccEEEccCCccc-ccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCC
Q 003200          651 FSRMLVLILRSNQFH-GPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRN  729 (840)
Q Consensus       651 l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N  729 (840)
                      .++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|                   +.|++++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-------------------~~L~Ls~n   74 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL-------------------KKLELSDN   74 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC-------------------CEEECCSS
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC-------------------CEEECCCC
Confidence            456777777777776 66777777788888888888888744  455555555                   88888888


Q ss_pred             cccccCcccccCCCCCCeEeCCCCccccc-CCcchhccCCCCeEeCCCCcccccCC---ccccCCCCCCeEeccC
Q 003200          730 NFSGEILSEVTNLKALQSINFSFNTFTGR-IPESIGTMRALESVDFSVNQLSGEIP---QSMSSLTFLNHLNLSN  800 (840)
Q Consensus       730 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~  800 (840)
                      ++++.+|..+..+++|++|++++|++++. .|..++.+++|++|++++|++++..+   ..+..+++|++|++++
T Consensus        75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            88877787777888888888888888863 34778888888888888888886555   4688888888888764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=5e-15  Score=143.13  Aligned_cols=110  Identities=24%  Similarity=0.339  Sum_probs=69.3

Q ss_pred             cccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcc
Q 003200          676 AFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTF  755 (840)
Q Consensus       676 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l  755 (840)
                      ++|+.|++++|+++ .+|..+.++++|                   +.|+|++|++++..+..|.++++|++|+|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHL-------------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTC-------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCC-------------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            35566666666665 555555555444                   6666666666655555666666666666666666


Q ss_pred             cccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 003200          756 TGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       756 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  805 (840)
                      ++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++..
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            66666666666667777777776664444456666667777777776653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=7.1e-15  Score=140.32  Aligned_cols=132  Identities=19%  Similarity=0.198  Sum_probs=87.5

Q ss_pred             cEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc
Q 003200          655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE  734 (840)
Q Consensus       655 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  734 (840)
                      +.+++++|.++. +|..+  .++|+.|++++|++++..+..+..+++|                   ++|++++|++++.
T Consensus        10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L-------------------~~L~l~~n~l~~~   67 (177)
T 2o6r_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL-------------------TKLSLSQNQIQSL   67 (177)
T ss_dssp             TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------SEEECCSSCCCCC
T ss_pred             CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-------------------cEEECCCCcceEe
Confidence            344445554442 22222  2456666676666664444455555555                   6777777777755


Q ss_pred             CcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCC
Q 003200          735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       735 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  808 (840)
                      .+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus        68 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            55556777778888888888876666667778888888888888875555556777888888888888877666

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4.6e-15  Score=137.20  Aligned_cols=129  Identities=19%  Similarity=0.222  Sum_probs=108.2

Q ss_pred             CCcccEEeccCCcCc-cccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEE
Q 003200          554 TKSLEGLKLTDNYLQ-GEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASL  632 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  632 (840)
                      .++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|++++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467889999999988 67888888899999999999999866  678888999999999999987788888889999999


Q ss_pred             eCCCCccccc-CChhhhhccCCccEEEccCCcccccCC---ccccCccccceeeccc
Q 003200          633 DVDENEFVGN-IPTWFGERFSRMLVLILRSNQFHGPLP---KTICDLAFLQILDLAD  685 (840)
Q Consensus       633 ~ls~N~l~~~-~p~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~Ls~  685 (840)
                      ++++|++++. .+..+. .+++|++|++++|.+++..+   ..+..+++|+.||+++
T Consensus        94 ~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999998853 335555 78899999999999987766   5788889999998864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=1.8e-14  Score=139.21  Aligned_cols=127  Identities=21%  Similarity=0.270  Sum_probs=80.9

Q ss_pred             EEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC
Q 003200          631 SLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG  710 (840)
Q Consensus       631 ~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  710 (840)
                      .+++++|.++ .+|..+   .+++++|++++|+++ .+|..+..+++|+.|++++|++++..+..|.++++|        
T Consensus        14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L--------   80 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL--------   80 (193)
T ss_dssp             EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred             EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC--------
Confidence            4455555544 444432   235555555555555 344556666666667777776665555556665555        


Q ss_pred             cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200          711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                                 +.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++..
T Consensus        81 -----------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           81 -----------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             -----------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             -----------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence                       667777777776666667777777777777777775555567777777777777777753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=2e-14  Score=137.23  Aligned_cols=132  Identities=17%  Similarity=0.214  Sum_probs=94.3

Q ss_pred             cEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCccccccc
Q 003200          630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFT  709 (840)
Q Consensus       630 ~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  709 (840)
                      +.+++++|.++ .+|..+   .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|       
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------   78 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL-------   78 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc-------
Confidence            45555555554 444432   3566777777777766666666777778888888888775555556666655       


Q ss_pred             CcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCC
Q 003200          710 GSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP  784 (840)
Q Consensus       710 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  784 (840)
                                  +.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus        79 ------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           79 ------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence                        788888888886666667888888888888888886666667888888888888888886554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=2.3e-16  Score=153.74  Aligned_cols=151  Identities=19%  Similarity=0.271  Sum_probs=86.0

Q ss_pred             CCCcEEeCCCCcccccCCh------hhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccc
Q 003200          627 TALASLDVDENEFVGNIPT------WFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLT  700 (840)
Q Consensus       627 ~~L~~L~ls~N~l~~~~p~------~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  700 (840)
                      ..++.++++.+.+.+.+|.      .+. .+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            3444444444444444333      443 45555555555555554 34 5555666666666666665 4454444434


Q ss_pred             cCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCC-cchhccCCCCeEeCCCCcc
Q 003200          701 GMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIP-ESIGTMRALESVDFSVNQL  779 (840)
Q Consensus       701 ~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l  779 (840)
                      +|                   +.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++
T Consensus        94 ~L-------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           94 TL-------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HC-------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             cC-------------------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            44                   666666666664 33 46666677777777777664222 3566677777777777777


Q ss_pred             cccCCcc----------ccCCCCCCeEeccCCccc
Q 003200          780 SGEIPQS----------MSSLTFLNHLNLSNNNLT  804 (840)
Q Consensus       780 ~~~~p~~----------l~~l~~L~~L~ls~N~l~  804 (840)
                      ++.+|..          +..+++|++||  +|+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            6655542          66677777776  55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=4e-14  Score=134.87  Aligned_cols=82  Identities=11%  Similarity=0.148  Sum_probs=53.6

Q ss_pred             eEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCc--chhccCCCCeEeCCCCcccccCCcc----ccCCCCCCe
Q 003200          722 SLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPE--SIGTMRALESVDFSVNQLSGEIPQS----MSSLTFLNH  795 (840)
Q Consensus       722 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~  795 (840)
                      +.|++++|++++..+..+..+++|++|++++|+++ .+|.  .++.+++|++|++++|+++ .+|..    +..+++|++
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            66666666666443344466777777777777775 4554  6667777777777777776 45553    667777777


Q ss_pred             EeccCCcccc
Q 003200          796 LNLSNNNLTG  805 (840)
Q Consensus       796 L~ls~N~l~g  805 (840)
                      ||+++|....
T Consensus       145 Ld~~~n~~~~  154 (176)
T 1a9n_A          145 LDFQKVKLKE  154 (176)
T ss_dssp             ETTEECCHHH
T ss_pred             eCCCcCCHHH
Confidence            7777776644

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=9.9e-16  Score=149.20  Aligned_cols=133  Identities=17%  Similarity=0.198  Sum_probs=95.5

Q ss_pred             ccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcccccccc
Q 003200          622 SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG  701 (840)
Q Consensus       622 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  701 (840)
                      .+..+++|++|++++|.+++ +| .+. .+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            66666777777777777664 55 444 5677777777777776 456666667788888888888874 44 4555555


Q ss_pred             CcccccccCcccccccCCcceEEeCCCCcccccCc-ccccCCCCCCeEeCCCCcccccCCcc----------hhccCCCC
Q 003200          702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEIL-SEVTNLKALQSINFSFNTFTGRIPES----------IGTMRALE  770 (840)
Q Consensus       702 L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~  770 (840)
                      |                   +.|++++|++++..+ ..+..+++|++|++++|++++.+|..          +..+++|+
T Consensus       117 L-------------------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          117 L-------------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             S-------------------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred             C-------------------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence            5                   788888888875332 46788889999999999988776653          78899999


Q ss_pred             eEeCCCCcccc
Q 003200          771 SVDFSVNQLSG  781 (840)
Q Consensus       771 ~L~Ls~N~l~~  781 (840)
                      .||  +|.++.
T Consensus       178 ~Ld--~~~i~~  186 (198)
T 1ds9_A          178 KLD--GMPVDV  186 (198)
T ss_dssp             EEC--CGGGTT
T ss_pred             EEC--CcccCH
Confidence            887  676653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=7.5e-14  Score=132.94  Aligned_cols=135  Identities=17%  Similarity=0.171  Sum_probs=98.0

Q ss_pred             ccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcccccccc
Q 003200          622 SLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTG  701 (840)
Q Consensus       622 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  701 (840)
                      .+.++.+|++|++++|.++ .+|. +....++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3445566666666666666 3343 332334777777777777765  56777888888888888888543344466665


Q ss_pred             CcccccccCcccccccCCcceEEeCCCCcccccCcc--cccCCCCCCeEeCCCCcccccCCcc----hhccCCCCeEeCC
Q 003200          702 MVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS--EVTNLKALQSINFSFNTFTGRIPES----IGTMRALESVDFS  775 (840)
Q Consensus       702 L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls  775 (840)
                      |                   +.|++++|+++ .+|.  .+..+++|+.|++++|+++ .+|..    +..+++|+.||++
T Consensus        90 L-------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           90 L-------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             C-------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred             C-------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCC
Confidence            5                   88899999886 4555  7888999999999999998 56664    8899999999999


Q ss_pred             CCcccc
Q 003200          776 VNQLSG  781 (840)
Q Consensus       776 ~N~l~~  781 (840)
                      +|....
T Consensus       149 ~n~~~~  154 (176)
T 1a9n_A          149 KVKLKE  154 (176)
T ss_dssp             ECCHHH
T ss_pred             cCCHHH
Confidence            998764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.47  E-value=1.3e-12  Score=141.17  Aligned_cols=219  Identities=11%  Similarity=0.095  Sum_probs=168.3

Q ss_pred             cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200          556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD  635 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls  635 (840)
                      +|+.+.+.. .++...+.+|.+|++|+.+++++|+++......|. +.+|+.+.+..+ ++.....+|.+|++|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            688888886 66667778899999999999999998876666776 588999999854 666677788999999999998


Q ss_pred             CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccc-----ccCCccccccccCcccccccC
Q 003200          636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS-----GAIPKCISNLTGMVTVKSFTG  710 (840)
Q Consensus       636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~l~~~~~  710 (840)
                      .| ++ .++...+.. .+|+.+.+ .+.++.+.+.+|.++++|+.+++.+|.+.     ...+.+|.++++|        
T Consensus       235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L--------  302 (401)
T 4fdw_A          235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL--------  302 (401)
T ss_dssp             TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC--------
T ss_pred             CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC--------
Confidence            75 44 455544434 78999988 45577677888999999999999887764     2334567776666        


Q ss_pred             cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200          711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL  790 (840)
Q Consensus       711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  790 (840)
                                 +.+++. +.++......|.++++|+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|..+
T Consensus       303 -----------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          303 -----------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             -----------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             -----------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence                       888888 4577666777888899999999655 665667888888 89999999998876566667777


Q ss_pred             C-CCCeEeccCCcc
Q 003200          791 T-FLNHLNLSNNNL  803 (840)
Q Consensus       791 ~-~L~~L~ls~N~l  803 (840)
                      + .++.+++..+.+
T Consensus       369 ~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          369 PDDITVIRVPAESV  382 (401)
T ss_dssp             CTTCCEEEECGGGH
T ss_pred             CCCccEEEeCHHHH
Confidence            4 678888777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2e-13  Score=128.82  Aligned_cols=109  Identities=19%  Similarity=0.211  Sum_probs=81.4

Q ss_pred             cceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccc
Q 003200          678 LQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTG  757 (840)
Q Consensus       678 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  757 (840)
                      .+.+++++|.++ .+|..+.  +.+                   +.|+|++|+|++..|..|.++++|++|+|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l-------------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~   68 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTT-------------------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV   68 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTC-------------------SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCC-------------------cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc
Confidence            467777777776 5665442  333                   778888888887777778888888888888888886


Q ss_pred             cCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCC
Q 003200          758 RIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       758 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  808 (840)
                      ..|..|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+
T Consensus        69 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            666667788888888888888886666667888888888888888876554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=3.3e-12  Score=137.91  Aligned_cols=266  Identities=14%  Similarity=0.127  Sum_probs=168.9

Q ss_pred             CCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEE
Q 003200          105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHL  184 (840)
Q Consensus       105 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L  184 (840)
                      +..++.+.+..+ ++.+ -...+..+ +|+.+.+..+ ++.+-..+|.++ +|+.+++.. .+..+...+|.++++|+.+
T Consensus       112 ~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            366677777653 4422 12344444 6888887765 555556677764 688888875 5666677778888888888


Q ss_pred             EccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEE
Q 003200          185 DLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECL  264 (840)
Q Consensus       185 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  264 (840)
                      ++++|+++.++.....   +.+|+.+.+..+ +..+..      ..|..+++|+.+++..+ +......+|.+ .+|+.+
T Consensus       186 ~l~~n~l~~I~~~aF~---~~~L~~l~lp~~-l~~I~~------~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i  253 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV---YAGIEEVLLPVT-LKEIGS------QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV  253 (401)
T ss_dssp             ECTTSCCSEECTTTTT---TCCCSEEECCTT-CCEECT------TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred             ecCCCcceEechhhEe---ecccCEEEeCCc-hheehh------hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence            8887777766543332   467777777643 555554      56777777777777654 34334445555 567777


Q ss_pred             EcccCccccccchhhhcCCCCcEEecccccCcc-----ccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCC
Q 003200          265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQ-----GRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGL  339 (840)
Q Consensus       265 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L  339 (840)
                      .+. +.++.....+|.++++|+.+++.++ ...     ...+..|.++++|                             
T Consensus       254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L-----------------------------  302 (401)
T 4fdw_A          254 KLP-NGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKL-----------------------------  302 (401)
T ss_dssp             EEE-TTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTC-----------------------------
T ss_pred             EeC-CCccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccC-----------------------------
Confidence            773 3444444566677777777776652 221     1223334444444                             


Q ss_pred             CEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCC-CCCEEEcc
Q 003200          340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLT-KLSWFRVG  418 (840)
Q Consensus       340 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~-~L~~L~L~  418 (840)
                      +.+.+. +.+......+|..+++|+.+.+..+ ++.+...+|.++ +|+.+++.+|... .++...|.+++ .++.+.+.
T Consensus       303 ~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          303 ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEEC
T ss_pred             CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeC
Confidence            444444 2344445567788888888888655 666667788888 8888888888776 55566777774 67888887


Q ss_pred             Ccccc
Q 003200          419 GNQLT  423 (840)
Q Consensus       419 ~n~l~  423 (840)
                      .+.+.
T Consensus       379 ~~~~~  383 (401)
T 4fdw_A          379 AESVE  383 (401)
T ss_dssp             GGGHH
T ss_pred             HHHHH
Confidence            76544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.43  E-value=5.4e-12  Score=137.08  Aligned_cols=66  Identities=12%  Similarity=0.129  Sum_probs=45.4

Q ss_pred             ccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccC
Q 003200          351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG  419 (840)
Q Consensus       351 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~  419 (840)
                      .....+|..+.+|+++.+..+ ++.+...+|.+|++|+.+++..+ +. .++...|.++++|+.+.+..
T Consensus        61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~  126 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPL  126 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred             EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccC
Confidence            334456777788888888643 65566667888888888888655 33 56666788888777766543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=6e-13  Score=125.94  Aligned_cols=107  Identities=21%  Similarity=0.255  Sum_probs=71.3

Q ss_pred             ceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200          679 QILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR  758 (840)
Q Consensus       679 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  758 (840)
                      +.+++++|.+. .+|..+.  +.+                   +.|+|++|++++..|..|.++++|+.|+|++|++++.
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L-------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i   72 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDK-------------------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI   72 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTC-------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCC-------------------cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc
Confidence            56666776665 5555443  333                   6677777777766666777777777777777777755


Q ss_pred             CCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccC
Q 003200          759 IPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKI  807 (840)
Q Consensus       759 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  807 (840)
                      .+..|..+++|++|+|++|++++..+..+..+++|++|++++|++....
T Consensus        73 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           73 PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            5555677777777777777777544445777777777777777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.41  E-value=8.4e-12  Score=135.59  Aligned_cols=312  Identities=14%  Similarity=0.074  Sum_probs=159.4

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCC
Q 003200          100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLS  179 (840)
Q Consensus       100 ~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~  179 (840)
                      .+|.++++|+.+++..+ ++.+ -...+..+++|+.+++.++ ++.+-..+|.++.+|+.+.+..+ +......+|.++.
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~  140 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred             HHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence            45777888888888643 5532 1345677888888888654 44444567778888887776543 4444555666655


Q ss_pred             CCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCC
Q 003200          180 FLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFS  259 (840)
Q Consensus       180 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  259 (840)
                      .++..........+    ..++.++++|+.+.+..+ +..+..      ..|..+.+|+.+++..+ +.......|.++.
T Consensus       141 ~~~~~~~~~~~~i~----~~aF~~c~~L~~i~l~~~-~~~I~~------~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~  208 (394)
T 4fs7_A          141 FKEITIPEGVTVIG----DEAFATCESLEYVSLPDS-METLHN------GLFSGCGKLKSIKLPRN-LKIIRDYCFAECI  208 (394)
T ss_dssp             CSEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred             ccccccCccccccc----hhhhcccCCCcEEecCCc-cceecc------ccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence            44333322221111    134555666666666543 222322      44566666666666544 3323334455555


Q ss_pred             CCcEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCC
Q 003200          260 PLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGL  339 (840)
Q Consensus       260 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L  339 (840)
                      .|+.+.+..+...  +.........|+.+.+...  ....-...+..+..++.+.+..+..                   
T Consensus       209 ~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~-------------------  265 (394)
T 4fs7_A          209 LLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKL-------------------  265 (394)
T ss_dssp             TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTC-------------------
T ss_pred             ccceeecCCCceE--eehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcc-------------------
Confidence            6665555443221  2222333445555555431  1222223344445555554443211                   


Q ss_pred             CEEEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccC
Q 003200          340 ESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG  419 (840)
Q Consensus       340 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~  419 (840)
                                 ......|..+..++.+......+.   ...|..+.+|+.+.+..+ +. .|+..+|.++++|+.+++..
T Consensus       266 -----------~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~  329 (394)
T 4fs7_A          266 -----------RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPY  329 (394)
T ss_dssp             -----------EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCT
T ss_pred             -----------eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCC
Confidence                       122334445555555555443322   224555555555555443 22 44444555555555555543


Q ss_pred             cccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCC
Q 003200          420 NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNS  468 (840)
Q Consensus       420 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n  468 (840)
                      + ++.....+|..+.+|+.+.+..+ +......+|.+|++|+.+++..+
T Consensus       330 ~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          330 L-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             c-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            2 44444555555555666655544 33444556667777777776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=2.5e-12  Score=121.26  Aligned_cols=106  Identities=17%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             cEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc
Q 003200          655 LVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE  734 (840)
Q Consensus       655 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  734 (840)
                      +.+++++|.++. +|..+  .++|+.|++++|++++..|..+..+++|                   ++|+|++|+|++.
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~l   69 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL-------------------TRLDLDNNQLTVL   69 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------SEEECCSSCCCCC
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-------------------CEEECCCCCcCcc
Confidence            345555555543 33333  2556666666666665556666665555                   6677777777755


Q ss_pred             CcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccccc
Q 003200          735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGE  782 (840)
Q Consensus       735 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  782 (840)
                      .+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++...
T Consensus        70 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            555567777777777777777766666677777788888888877644

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=4e-14  Score=151.41  Aligned_cols=158  Identities=19%  Similarity=0.200  Sum_probs=80.0

Q ss_pred             CCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccc-----cCccccceeeccccccccc----CCccccc
Q 003200          628 ALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTI-----CDLAFLQILDLADNNLSGA----IPKCISN  698 (840)
Q Consensus       628 ~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~  698 (840)
                      +|++|++++|.+.......+...+++|+.|++++|.++......+     ...++|++|+|++|.++..    ++..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            444444444444332222333333444555555554433222222     1345566677777666532    1222222


Q ss_pred             cccCcccccccCcccccccCCcceEEeCCCCccccc----CcccccCCCCCCeEeCCCCccccc----CCcchhccCCCC
Q 003200          699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE----ILSEVTNLKALQSINFSFNTFTGR----IPESIGTMRALE  770 (840)
Q Consensus       699 l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~  770 (840)
                      .+                   .|++|||++|.+++.    ++..+...++|++|+|++|.++..    ++..+...++|+
T Consensus       182 ~~-------------------~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~  242 (372)
T 3un9_A          182 NT-------------------SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLE  242 (372)
T ss_dssp             CS-------------------SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCC
T ss_pred             CC-------------------CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCC
Confidence            33                   336777777777643    244556667777888888877653    334455567788


Q ss_pred             eEeCCCCcccccCCccccCCCC-----CCeEe--ccCCccc
Q 003200          771 SVDFSVNQLSGEIPQSMSSLTF-----LNHLN--LSNNNLT  804 (840)
Q Consensus       771 ~L~Ls~N~l~~~~p~~l~~l~~-----L~~L~--ls~N~l~  804 (840)
                      +|||++|+++..-...+..+..     |+.+.  +..|.++
T Consensus       243 ~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          243 LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             EEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             EEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            8888888777554444443321     55555  5555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=5.3e-12  Score=119.40  Aligned_cols=104  Identities=14%  Similarity=0.182  Sum_probs=65.4

Q ss_pred             EEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccC
Q 003200          656 VLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEI  735 (840)
Q Consensus       656 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  735 (840)
                      .+++++|++. .+|..+.  ++|+.|++++|++++..|..+.++++|                   +.|+|++|+|++..
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------~~L~Ls~N~l~~i~   73 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL-------------------QQLYFNSNKLTAIP   73 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-------------------CEEECCSSCCCCCC
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC-------------------CEEECCCCCCCccC
Confidence            4444555443 3333332  556666666666665556666665555                   66777777766544


Q ss_pred             cccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccc
Q 003200          736 LSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSG  781 (840)
Q Consensus       736 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  781 (840)
                      +..|.++++|++|+|++|++++..+..|..+++|++|+|++|++..
T Consensus        74 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            4456677777777777777775555557777777777777777763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=5e-13  Score=142.90  Aligned_cols=166  Identities=14%  Similarity=0.133  Sum_probs=123.0

Q ss_pred             CCCCcEEeCCCCcccccCChhhhh----ccCCccEEEccCCcccccCCccc-cCccccceeecccccccccCCccccccc
Q 003200          626 CTALASLDVDENEFVGNIPTWFGE----RFSRMLVLILRSNQFHGPLPKTI-CDLAFLQILDLADNNLSGAIPKCISNLT  700 (840)
Q Consensus       626 l~~L~~L~ls~N~l~~~~p~~~~~----~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  700 (840)
                      ++.|+.|++++|.++......+..    ..++|+.|++++|.++......+ ..+++|+.|+|++|.++......+...-
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            367888999998887554444442    23689999999999975433333 3467899999999999754443332210


Q ss_pred             cCcccccccCcccccccCCcceEEeCCCCccccc----CcccccCCCCCCeEeCCCCccccc----CCcchhccCCCCeE
Q 003200          701 GMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE----ILSEVTNLKALQSINFSFNTFTGR----IPESIGTMRALESV  772 (840)
Q Consensus       701 ~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L  772 (840)
                                    ....+.|+.|+|++|.++..    ++..+..+++|++|+|++|.++..    ++..+...++|++|
T Consensus       151 --------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L  216 (372)
T 3un9_A          151 --------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL  216 (372)
T ss_dssp             --------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE
T ss_pred             --------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE
Confidence                          01134569999999999753    445567889999999999999864    35677888999999


Q ss_pred             eCCCCccccc----CCccccCCCCCCeEeccCCcccc
Q 003200          773 DFSVNQLSGE----IPQSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       773 ~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~g  805 (840)
                      ||++|.++..    ++..+...++|++|++++|++++
T Consensus       217 ~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            9999999863    44556677999999999999865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=4.2e-11  Score=127.84  Aligned_cols=82  Identities=21%  Similarity=0.251  Sum_probs=42.0

Q ss_pred             eEEeCCC-CcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccC
Q 003200          722 SLLDISR-NNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN  800 (840)
Q Consensus       722 ~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  800 (840)
                      +.|+|++ |+|++..+..|+++++|+.|+|++|+|++..|..|+++++|++|||++|+|++..|..+..++ |+.|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            4555553 555544444555555555555555555555555555555555555555555533333333333 55555555


Q ss_pred             Cccc
Q 003200          801 NNLT  804 (840)
Q Consensus       801 N~l~  804 (840)
                      |++.
T Consensus       113 N~~~  116 (347)
T 2ifg_A          113 NPLH  116 (347)
T ss_dssp             SCCC
T ss_pred             CCcc
Confidence            5543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.20  E-value=8.8e-10  Score=119.56  Aligned_cols=108  Identities=14%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             ccCCCC-CCCEEEccCCcccccccccccCCCCCCEEEccCCc---cccccChhhhccCCCCCEEEccCcccceeccCCCC
Q 003200          356 QLGQFR-NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNK---LNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWI  431 (840)
Q Consensus       356 ~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  431 (840)
                      +|.+++ .|+++.+-++ ++.+...+|.+|++|+.+.+..|.   ++ .|...+|.++.+|+.+.+..+ ++......|.
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhh
Confidence            344442 3555555432 333444455555555555554432   22 344445555555554444322 2333333444


Q ss_pred             CccCccEEecccccCCCCCCccccCCCCCcEEEccC
Q 003200          432 PPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLN  467 (840)
Q Consensus       432 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~  467 (840)
                      .+.+|+.+.+... +.......|..+..|+.+.+.+
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred             hhcccccccccce-eeeecccceecccccccccccc
Confidence            4444444444322 1122233455555565555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.14  E-value=4.3e-09  Score=114.09  Aligned_cols=304  Identities=11%  Similarity=0.088  Sum_probs=146.2

Q ss_pred             ccCCC-CCcEEeccCCcccCCCCCCCCCCCCCCeEeccCcc---ccCCCcccccCCCCCCEEEccCcCCCCCcchhhhcC
Q 003200          127 IGSMR-NLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNY---LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATN  202 (840)
Q Consensus       127 l~~l~-~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~---~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  202 (840)
                      +..++ .|+.+.+..+ ++.+-..+|.++++|+.+.+..+.   ++.+...+|.++.+|+.+.+..+ ++.+.  ..++.
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~--~~aF~  134 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID--SEAFH  134 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC--TTTTT
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh--hhhhh
Confidence            44443 4777777654 554556778888888888887653   55566667777777777666543 22221  12344


Q ss_pred             CCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCccccccchhhhcC
Q 003200          203 TLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNL  282 (840)
Q Consensus       203 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  282 (840)
                      .+.+|+.+.+..+ +..+..      ..+..+.+|+.+.+..+ +.......|. ...|+.+.+..+... ....++..+
T Consensus       135 ~c~~L~~i~lp~~-~~~I~~------~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c  204 (394)
T 4gt6_A          135 HCEELDTVTIPEG-VTSVAD------GMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSEC  204 (394)
T ss_dssp             TCTTCCEEECCTT-CCEECT------TTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTC
T ss_pred             hhcccccccccce-eeeecc------cceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhc
Confidence            5556666665432 222222      44555555665555443 2212222232 234555555433211 233344445


Q ss_pred             CCCcEEecccccCccccCccccc-CCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEccCCcccccCccccCCCC
Q 003200          283 TSVSWLDLSINIGLQGRIPRSMA-NFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFR  361 (840)
Q Consensus       283 ~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  361 (840)
                      ..++....... ... .+...+. ...........              +  .....+..+.+.. .+......+|..+.
T Consensus       205 ~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~ip~-~v~~i~~~aF~~c~  265 (394)
T 4gt6_A          205 FALSTITSDSE-SYP-AIDNVLYEKSANGDYALIR--------------Y--PSQREDPAFKIPN-GVARIETHAFDSCA  265 (394)
T ss_dssp             TTCCEEEECCS-SSC-BSSSCEEEECTTSCEEEEE--------------C--CTTCCCSEEECCT-TEEEECTTTTTTCS
T ss_pred             cccceeccccc-ccc-cccceeecccccccccccc--------------c--ccccccceEEcCC-cceEcccceeeecc
Confidence            55544444331 100 0000000 00000000000              0  0001233333321 22233344566677


Q ss_pred             CCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccCccEEec
Q 003200          362 NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGL  441 (840)
Q Consensus       362 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  441 (840)
                      .|+.+.+.++.. .+...+|.++++|+.+.+.. .+. .++...|.++.+|+.+.+..+ ++......|..+.+|+.+.+
T Consensus       266 ~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          266 YLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccEEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            777777765433 24445667777777777753 233 566667777777777776543 44444445555555555555


Q ss_pred             ccccCCCCCCccccCCCCCcEEEccCC
Q 003200          442 HNCYVGSRFPQWLHSQKHLQYLNLLNS  468 (840)
Q Consensus       442 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n  468 (840)
                      ..+ +......+|.+|++|+.+++.++
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            332 33333444555555555554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=1.3e-10  Score=124.04  Aligned_cols=110  Identities=22%  Similarity=0.201  Sum_probs=90.0

Q ss_pred             ccccceecCCCCCCEEEEEcCCCCCCCCCccccccccccccCCCCCCEEeCCC-CCCCCCCccccccCCCCCcEEeccCC
Q 003200           63 CTWAGVACGNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSS-NDFQGVQIPRFIGSMRNLRYLNLSDT  141 (840)
Q Consensus        63 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n  141 (840)
                      |.|.+|.|.+.                   .-...+|. +..+++|++|+|++ |.+.++ .+..|+.+++|++|+|++|
T Consensus         8 C~~~~v~~~~~-------------------n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N   66 (347)
T 2ifg_A            8 HGSSGLRCTRD-------------------GALDSLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKS   66 (347)
T ss_dssp             SSSSCEECCSS-------------------CCCTTTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSS
T ss_pred             ccCCEEEcCCC-------------------CCCCccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCC
Confidence            88888888531                   01234777 88999999999996 999864 4567889999999999999


Q ss_pred             cccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcCCCCC
Q 003200          142 QFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKA  194 (840)
Q Consensus       142 ~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  194 (840)
                      ++++..|..|.++++|++|+|++|++.......|..++ |++|+|.+|.+...
T Consensus        67 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            99998888999999999999999999887777777776 88888888887653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=1.1e-09  Score=115.71  Aligned_cols=83  Identities=17%  Similarity=0.327  Sum_probs=49.6

Q ss_pred             CCcceEEeCCCCcccccCccccc---CCCCCCeEeCCCCccccc----CCcchhccCCCCeEeCCCCcccccCCccccC-
Q 003200          718 LPLVSLLDISRNNFSGEILSEVT---NLKALQSINFSFNTFTGR----IPESIGTMRALESVDFSVNQLSGEIPQSMSS-  789 (840)
Q Consensus       718 ~~~L~~L~Ls~N~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-  789 (840)
                      +|.|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-+.+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            45556677766666543333332   456777777777777653    3444456677777777777776543333433 


Q ss_pred             CCCCCeEeccCCc
Q 003200          790 LTFLNHLNLSNNN  802 (840)
Q Consensus       790 l~~L~~L~ls~N~  802 (840)
                      +  ...++++.++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3557777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.84  E-value=1.5e-09  Score=114.84  Aligned_cols=203  Identities=18%  Similarity=0.229  Sum_probs=126.9

Q ss_pred             CcccEEeccCCcCcc-c-------cCccccCCCCcCEEEccCCcCC---------CCCCcccCCCCcccEEEccCCcCcC
Q 003200          555 KSLEGLKLTDNYLQG-E-------IPDCWMSYQNLKVLKLSNNKFS---------GNLPNSLGSITSLVWLYLRKNRLSG  617 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~-~-------~~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~l~~l~~L~~L~L~~n~l~~  617 (840)
                      ..++.|.+......+ .       +..+...+++|+.|.+..+...         +.+...+..+++|+.|+|++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            457788887665442 1       1233456789999998765431         113334566788999999887311 


Q ss_pred             CCCcccccCCCCcEEeCCCCcccccCChhhhh-ccCCccEEEccC--Cccccc-----CCccc--cCccccceeeccccc
Q 003200          618 KIPISLKNCTALASLDVDENEFVGNIPTWFGE-RFSRMLVLILRS--NQFHGP-----LPKTI--CDLAFLQILDLADNN  687 (840)
Q Consensus       618 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~-~l~~L~~L~l~~--n~l~~~-----~p~~l--~~l~~L~~L~Ls~N~  687 (840)
                      .++. +. +++|+.|++..|.+.......+.. .+++|+.|+|+.  |...+.     +...+  ..+++|+.|++++|.
T Consensus       186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            2333 33 788999999888776444444432 578899888853  221111     11122  247889999998888


Q ss_pred             ccccCCccccccccCcccccccCcccccccCCcceEEeCCCCccccc----CcccccCCCCCCeEeCCCCcccccCCcch
Q 003200          688 LSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE----ILSEVTNLKALQSINFSFNTFTGRIPESI  763 (840)
Q Consensus       688 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l  763 (840)
                      +.+..+..+....                .+|.|+.|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+
T Consensus       264 i~~~~~~~la~a~----------------~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l  327 (362)
T 2ra8_A          264 EQNVVVEMFLESD----------------ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL  327 (362)
T ss_dssp             THHHHHHHHHHCS----------------SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred             CchHHHHHHHhCc----------------cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence            8754433332211                245668899999988764    34445667889999999998875544444


Q ss_pred             hc-cCCCCeEeCCCCc
Q 003200          764 GT-MRALESVDFSVNQ  778 (840)
Q Consensus       764 ~~-l~~L~~L~Ls~N~  778 (840)
                      .. +  ...+|++.++
T Consensus       328 ~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          328 QKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHC--CSEEECCSBC
T ss_pred             HHHc--CCEEEecCCc
Confidence            43 2  3668888887

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.83  E-value=2.7e-07  Score=99.44  Aligned_cols=82  Identities=9%  Similarity=0.081  Sum_probs=50.5

Q ss_pred             cccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCcc
Q 003200          355 DQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPF  434 (840)
Q Consensus       355 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  434 (840)
                      .|+....+|+++.+... ++.+...+|.+|.+|+.+.+..+ ++ .|...+|.++ +|+.+.+..+ +.......|.. .
T Consensus        40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~  113 (379)
T 4h09_A           40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-T  113 (379)
T ss_dssp             TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-C
T ss_pred             cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-C
Confidence            34555677888888653 66566678888888888888654 44 6777778776 5666665432 33333333322 2


Q ss_pred             CccEEecc
Q 003200          435 QLVALGLH  442 (840)
Q Consensus       435 ~L~~L~l~  442 (840)
                      +|+.+.+.
T Consensus       114 ~L~~i~lp  121 (379)
T 4h09_A          114 DLDDFEFP  121 (379)
T ss_dssp             CCSEEECC
T ss_pred             CcccccCC
Confidence            45555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.78  E-value=6.3e-07  Score=96.51  Aligned_cols=118  Identities=13%  Similarity=0.143  Sum_probs=59.0

Q ss_pred             ccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcccceeccCCCCCccC
Q 003200          356 QLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQ  435 (840)
Q Consensus       356 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  435 (840)
                      .+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++...|.++++|+.+.+.++.++......|..+.+
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCC
Confidence            3444555555555443 33333444555555555555433 22 344445555555555555555555555555555555


Q ss_pred             ccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHH
Q 003200          436 LVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRF  478 (840)
Q Consensus       436 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~  478 (840)
                      |+.+.+..+ +......+|.+|.+|+.+.+..+ ++.+....|
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF  352 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence            555555432 33334455666666666666443 443333333

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=6e-08  Score=92.35  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=46.5

Q ss_pred             eEEeCCCCccccc----CcccccCCCCCCeEeCCCCccccc----CCcchhccCCCCeEeC--CCCccccc----CCccc
Q 003200          722 SLLDISRNNFSGE----ILSEVTNLKALQSINFSFNTFTGR----IPESIGTMRALESVDF--SVNQLSGE----IPQSM  787 (840)
Q Consensus       722 ~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l  787 (840)
                      ++|+|++|.+...    +...+...+.|++|+|++|.+...    +...+...++|++|+|  ++|.+...    +.+.+
T Consensus        68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L  147 (185)
T 1io0_A           68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML  147 (185)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred             CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence            5566666655432    223334445666666666666543    3445555566666666  66666543    23334


Q ss_pred             cCCCCCCeEeccCCccc
Q 003200          788 SSLTFLNHLNLSNNNLT  804 (840)
Q Consensus       788 ~~l~~L~~L~ls~N~l~  804 (840)
                      ...+.|++|++++|.+.
T Consensus       148 ~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          148 EKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEeccCCCCC
Confidence            44566777777776653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=5.1e-08  Score=92.83  Aligned_cols=90  Identities=17%  Similarity=0.186  Sum_probs=40.3

Q ss_pred             cCCCCcCEEEccCCcCCCCC----CcccCCCCcccEEEccCCcCcCC----CCcccccCCCCcEEeC--CCCcccccCCh
Q 003200          576 MSYQNLKVLKLSNNKFSGNL----PNSLGSITSLVWLYLRKNRLSGK----IPISLKNCTALASLDV--DENEFVGNIPT  645 (840)
Q Consensus       576 ~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l--s~N~l~~~~p~  645 (840)
                      ...++|++|+|++|.+....    ...+...++|++|+|++|.|...    +...+...++|++|++  ++|.+...-..
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            33444555555555444211    11223334455555555555422    2334444555555555  55555433221


Q ss_pred             hhh---hccCCccEEEccCCccc
Q 003200          646 WFG---ERFSRMLVLILRSNQFH  665 (840)
Q Consensus       646 ~~~---~~l~~L~~L~l~~n~l~  665 (840)
                      .+.   ...++|++|++++|.+.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCC
Confidence            111   12355666666666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.38  E-value=7.9e-08  Score=96.02  Aligned_cols=78  Identities=21%  Similarity=0.278  Sum_probs=44.3

Q ss_pred             CCcceEEeCCCCcccc--cCcccccCCCCCCeEeCCCCcccccCCcchhccC--CCCeEeCCCCcccccCCc-------c
Q 003200          718 LPLVSLLDISRNNFSG--EILSEVTNLKALQSINFSFNTFTGRIPESIGTMR--ALESVDFSVNQLSGEIPQ-------S  786 (840)
Q Consensus       718 ~~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~-------~  786 (840)
                      +|.|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|++.+.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3444666666666665  3345555666666666666666643  2233333  666666666666655542       2


Q ss_pred             ccCCCCCCeEe
Q 003200          787 MSSLTFLNHLN  797 (840)
Q Consensus       787 l~~l~~L~~L~  797 (840)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            44556666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=2.6e-07  Score=92.29  Aligned_cols=84  Identities=23%  Similarity=0.275  Sum_probs=67.1

Q ss_pred             EeCCCCccc---ccCcccccCCCCCCeEeCCCCcccc--cCCcchhccCCCCeEeCCCCcccccCCccccCCC--CCCeE
Q 003200          724 LDISRNNFS---GEILSEVTNLKALQSINFSFNTFTG--RIPESIGTMRALESVDFSVNQLSGEIPQSMSSLT--FLNHL  796 (840)
Q Consensus       724 L~Ls~N~l~---~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L  796 (840)
                      ++++.|+..   +.++....+++.|++|+|++|++++  .+|..+..+++|+.|+|++|++++.  +.+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            677888543   2222233678999999999999998  5667888999999999999999965  3455555  99999


Q ss_pred             eccCCcccccCCC
Q 003200          797 NLSNNNLTGKIPL  809 (840)
Q Consensus       797 ~ls~N~l~g~ip~  809 (840)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999998884

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=5.5e-06  Score=76.40  Aligned_cols=86  Identities=14%  Similarity=0.103  Sum_probs=61.1

Q ss_pred             CCCCEEECcCCCCCCCCcccccCCCCCcEEEcccCc-cccccchhhhcC----CCCcEEecccccCccccCcccccCCCC
Q 003200          235 TSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNS-LQGTISDAIGNL----TSVSWLDLSINIGLQGRIPRSMANFCN  309 (840)
Q Consensus       235 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~~~~~~~~~~l~~l~~  309 (840)
                      .+|++||++++.++...-..+.++++|++|+|++|. +++.--..+..+    ++|++|++++|..+++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467778888777766555566778888888888874 665544555554    468888888876677666666777888


Q ss_pred             CcEEEcCCCcc
Q 003200          310 LKSVNLRGVHL  320 (840)
Q Consensus       310 L~~L~l~~~~~  320 (840)
                      |++|++++|.-
T Consensus       141 L~~L~L~~c~~  151 (176)
T 3e4g_A          141 LKYLFLSDLPG  151 (176)
T ss_dssp             CCEEEEESCTT
T ss_pred             CCEEECCCCCC
Confidence            88888887753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.86  E-value=4e-06  Score=77.27  Aligned_cols=83  Identities=10%  Similarity=0.115  Sum_probs=69.3

Q ss_pred             cceEEeCCCCcccccCcccccCCCCCCeEeCCCCc-ccccCCcchhcc----CCCCeEeCCCCc-ccccCCccccCCCCC
Q 003200          720 LVSLLDISRNNFSGEILSEVTNLKALQSINFSFNT-FTGRIPESIGTM----RALESVDFSVNQ-LSGEIPQSMSSLTFL  793 (840)
Q Consensus       720 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L  793 (840)
                      .|+.||+|++.++..-...+..+++|+.|+|++|. ++..--..++.+    ++|++|+|++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            46999999999998777888999999999999996 776555556664    479999999985 776544568889999


Q ss_pred             CeEeccCCc
Q 003200          794 NHLNLSNNN  802 (840)
Q Consensus       794 ~~L~ls~N~  802 (840)
                      ++|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999986

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.38  E-value=4.2e-05  Score=71.92  Aligned_cols=87  Identities=17%  Similarity=0.173  Sum_probs=44.9

Q ss_pred             CCCcEEEccCC-cCcccCCchhhhccCCCCcccEEeccCCcCccc----cCccccCCCCcCEEEccCCcCCCCC----Cc
Q 003200          527 SNLVYLDFSNN-SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE----IPDCWMSYQNLKVLKLSNNKFSGNL----PN  597 (840)
Q Consensus       527 ~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~  597 (840)
                      +.|+.|++++| .+.......++..+..-+.|+.|+|++|.+...    +.+++..-+.|++|+|++|.|....    .+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            34555666553 555444455555555556666666666666532    2223334455666666666665321    12


Q ss_pred             ccCCCCcccEEEccCC
Q 003200          598 SLGSITSLVWLYLRKN  613 (840)
Q Consensus       598 ~l~~l~~L~~L~L~~n  613 (840)
                      .+..-+.|++|+|++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            2333344555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.91  E-value=0.00028  Score=66.34  Aligned_cols=70  Identities=13%  Similarity=0.150  Sum_probs=32.7

Q ss_pred             hhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCC----CcccccCCCCCcEEEccc
Q 003200          197 WLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSS----IPDWLYKFSPLECLNLRN  268 (840)
Q Consensus       197 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~  268 (840)
                      +...+...+.|++|+|++|.+.+...  ..+.+.+..-+.|++|+|++|.|...    +.+.+..-+.|++|+|++
T Consensus        62 la~aL~~N~~L~~L~L~~n~igd~ga--~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           62 LIEAACNSKHIEKFSLANTAISDSEA--RGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHTTCSCCCEEECTTSCCBHHHH--TTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHhhCCCcCEEEccCCCCChHHH--HHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            33444455555555555555543321  11223333445566666666655532    122333344455555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.67  E-value=0.0024  Score=55.97  Aligned_cols=57  Identities=16%  Similarity=0.279  Sum_probs=42.2

Q ss_pred             eEEeCCCCccc-ccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200          722 SLLDISRNNFS-GEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       722 ~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            57888888886 45665543  36788888888888666667778888888888888774

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.59  E-value=0.003  Score=55.36  Aligned_cols=57  Identities=16%  Similarity=0.212  Sum_probs=43.3

Q ss_pred             CeEeCCCCccc-ccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 003200          746 QSINFSFNTFT-GRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT  804 (840)
Q Consensus       746 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  804 (840)
                      ..++.+++.++ ..+|..+.  ++|++|||++|+|+..-+..|..+++|++|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            37888888886 45675443  47888999999988555566788888999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	840
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 91.7 bits (226), Expect = 9e-21
 Identities = 68/307 (22%), Positives = 108/307 (35%), Gaps = 29/307 (9%)

Query: 31  CLETERRALLRFKQDLQDPSNRLASWTGDGDCC--TWAGVAC--GNVTGHILELNLRNPS 86
           C   +++ALL+ K+DL +P+  L+SW    DCC  TW GV C     T  +  L+L   +
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 87  TSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGM 146
              P       +  +L +L +L++L +   +     IP  I  +  L YL ++ T   G 
Sbjct: 62  LPKPYP-----IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 147 IPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPS 206
           IP  L  +  L  LD S N L       +S L  L  +     N    +      +    
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKL 175

Query: 207 LLELRLSNCSLHHFPTLASPIPRGLQNLTSLKH----------------LDLDSNHFNSS 250
              + +S   L                  S                       + +  + 
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 251 IPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNL 310
               +     L  L+LRNN + GT+   +  L  +  L++S N  L G IP    N    
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIP-QGGNLQRF 293

Query: 311 KSVNLRG 317
                  
Sbjct: 294 DVSAYAN 300

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.3 bits (173), Expect = 7e-14
 Identities = 55/270 (20%), Positives = 94/270 (34%), Gaps = 9/270 (3%)

Query: 548 CYRVNETKSLEGLKLTDNYLQG--EIPDCWMSYQNLKVLKLSNN-KFSGNLPNSLGSITS 604
           C    +T  +  L L+   L     IP    +   L  L +       G +P ++  +T 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 605 LVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQF 664
           L +LY+    +SG IP  L     L +LD   N   G +P         ++ +    N+ 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRI 161

Query: 665 HGPLPKTICDLAFLQILDLADNN----LSGAIPKCISNLTGMVTVKSFTGSVVYREILPL 720
            G +P +    + L        N            ++     ++     G          
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 721 VSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS 780
            +       N     L +V   K L  ++   N   G +P+ +  ++ L S++ S N L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 781 GEIPQSMSSLTFLNHLNLSNNNLTGKIPLS 810
           GEIPQ   +L   +    +NN      PL 
Sbjct: 282 GEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.2 bits (165), Expect = 6e-13
 Identities = 61/287 (21%), Positives = 106/287 (36%), Gaps = 24/287 (8%)

Query: 500 SNLTKNTQLLFLSVNSNNMSGPLPLVSS--NLVYLDFSNNSFSGSISHFLCYRVNETKSL 557
              T+  ++  L ++  N+  P P+ SS  NL YL+F       ++   +   + +   L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 558 EGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG 617
             L +T   + G IPD     + L  L  S N  SG LP S+ S+ +LV +    NR+SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 618 KIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAF 677
            IP S  + + L +        +           +   V + R+                
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS---- 219

Query: 678 LQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILS 737
                              +     +   S    +    +   ++ LD+  N   G +  
Sbjct: 220 -----------------DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 738 EVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIP 784
            +T LK L S+N SFN   G IP+  G ++  +   ++ N+     P
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 51/292 (17%), Positives = 84/292 (28%), Gaps = 29/292 (9%)

Query: 355 DQLGQFRNLVTLNLANNSIVGL--IPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKL 412
           D   Q   +  L+L+  ++     IP S   L  L  L I              A LT+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 413 SWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISD 472
            +  +    ++  +         LV L      +    P  + S  +L  +    +RIS 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 473 IFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYL 532
             P  +   +     + +  N+  GKI     N                           
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN------------------------- 198

Query: 533 DFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFS 592
             +    S ++       +  +                        +NL  L L NN+  
Sbjct: 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 593 GNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIP 644
           G LP  L  +  L  L +  N L G+IP    N           N+ +   P
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 51/264 (19%), Positives = 87/264 (32%), Gaps = 12/264 (4%)

Query: 264 LNLRNNSLQG--TISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLS 321
           L+L   +L     I  ++ NL  +++L +     L G IP ++A    L       ++++
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL-----HYLYIT 109

Query: 322 QEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESF 381
                            L +LD   +++ G L   +    NLV +    N I G IP+S+
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 382 GQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGL 441
           G  S L          N    +           F      +            +      
Sbjct: 170 GSFSKLFTSMTISR--NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 442 HNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN 501
                 +     +   K+L  L+L N+RI    P + L     L  L+V  N   G+I  
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 502 LTKNTQLLFLSVNSNNM--SGPLP 523
                +    +  +N      PLP
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLP 310

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 7e-15
 Identities = 74/407 (18%), Positives = 124/407 (30%), Gaps = 63/407 (15%)

Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
             +L  +  L  D     S   D +   + L  +N  NN L       + NLT +  + +
Sbjct: 40  QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILM 95

Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY 350
           + N         ++ N   L   N +   +    +          SN +  +   S    
Sbjct: 96  NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 155

Query: 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLT 410
                   Q  +                     L+ L  L+  D   N        A LT
Sbjct: 156 LQQLSFGNQVTD------------------LKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 411 KLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRI 470
            L       NQ++       +    L  L L+   +       L S  +L  L+L N++I
Sbjct: 198 NLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI 253

Query: 471 SDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLV 530
           S++ P+  L     L  L +G NQ                    +            NL 
Sbjct: 254 SNLAPLSGLTK---LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 531 YLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK 590
           YL    N+ S                                    S   L+ L  +NNK
Sbjct: 311 YLTLYFNNISDISP------------------------------VSSLTKLQRLFFANNK 340

Query: 591 FSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDEN 637
            S    +SL ++T++ WL    N++S   P++  N T +  L +++ 
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.7 bits (177), Expect = 4e-14
 Identities = 67/370 (18%), Positives = 132/370 (35%), Gaps = 34/370 (9%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHG--KISNLTKNTQLLFLSVNS 515
             +  L      I  I  + +L +   L  ++   NQ      + NLTK   +L  +   
Sbjct: 44  DQVTTLQADRLGIKSIDGVEYLNN---LTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 516 NNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCW 575
            +++    L +   + L  +  +    + +       E  S     ++       +    
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 576 MSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD 635
              Q   +  L+N                     L  +         L   T L SL   
Sbjct: 161 FGNQVTDLKPLANLTT---------------LERLDISSNKVSDISVLAKLTNLESLIAT 205

Query: 636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIP-K 694
            N+     P       + +  L L  NQ       T+  L  L  LDLA+N +S   P  
Sbjct: 206 NNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS 260

Query: 695 CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNT 754
            ++ LT +    +   ++     L  ++ L+++ N         ++NLK L  +   FN 
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNN 318

Query: 755 FTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLS--TQ 812
            +   P  + ++  L+ + F+ N++S     S+++LT +N L+  +N ++   PL+  T+
Sbjct: 319 ISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTR 374

Query: 813 LQSFNASSFA 822
           +     +  A
Sbjct: 375 ITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.1 bits (165), Expect = 1e-12
 Identities = 64/349 (18%), Positives = 120/349 (34%), Gaps = 55/349 (15%)

Query: 104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLS 163
           DL  ++ L       + +     +  + NL  +N S+ Q   + P  L NL+ L  + ++
Sbjct: 42  DLDQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 96

Query: 164 SNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMAT-------NTLPSLLELR----- 211
           +N +                L    +        L          NT+  +  L      
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 212 -----------------LSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDW 254
                            L+        +        L  LT+L+ L   +N  +   P  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 255 LYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVN 314
           +   + L+ L+L  N L+      + +LT+++ LDL+ N  +    P S      L  + 
Sbjct: 217 IL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN-QISNLAPLS--GLTKLTELK 269

Query: 315 LRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIV 374
           L    +S             ++      ++  +         +   +NL  L L  N+I 
Sbjct: 270 LGANQISNISP---------LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 375 GLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLT 423
            + P     L+ L+ L   +NK++   S    ANLT ++W   G NQ++
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSDVSS---LANLTNINWLSAGHNQIS 364

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 8e-07
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSS 164
           LK+L+YL L  N+   +     + S+  L+ L  ++ +        L NL+++ +L    
Sbjct: 306 LKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 165 NYLYVDNVWWLSGLSFLEHLDLRS 188
           N +   ++  L+ L+ +  L L  
Sbjct: 361 NQI--SDLTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 4e-06
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
             +  L  L  L  ++N          + ++ N+ +L+    Q   + P  L NL+ +  
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 160 LDLSSN 165
           L L+  
Sbjct: 378 LGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 1e-14
 Identities = 51/293 (17%), Positives = 105/293 (35%), Gaps = 24/293 (8%)

Query: 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSN 165
              + LDL +N    +       +++NL  L L + +   + P     L  L+ L LS N
Sbjct: 31  PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 166 YLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLAS 225
            L          L  L   +     +          N L  ++ + L    L        
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKV-----RKSVFNGLNQMIVVELGTNPLKSSG---- 140

Query: 226 PIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSV 285
                 Q +  L ++ +   +  ++IP  L     L  L+L  N +    + ++  L ++
Sbjct: 141 IENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 286 SWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCV----SNGLES 341
           + L LS    +      S+AN  +L+ ++L    L +    + D     V    +N + +
Sbjct: 198 AKLGLS-FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

Query: 342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSI--VGLIPESFGQLSTLRELQI 392
           +        G+ T +     +   ++L +N +    + P +F  +     +Q+
Sbjct: 257 IGSNDFCPPGYNTKKA----SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.6 bits (174), Expect = 4e-14
 Identities = 50/279 (17%), Positives = 97/279 (34%), Gaps = 27/279 (9%)

Query: 555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNR 614
                L L +N +       + + +NL  L L NNK S   P +   +  L  LYL KN+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 615 LSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICD 674
           L        K    L   + +  +   ++          ++ L     +  G        
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQG 148

Query: 675 LAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE 734
           +  L  + +AD N++        +LT                       L +  N  +  
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLT----------------------ELHLDGNKITKV 186

Query: 735 ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLN 794
             + +  L  L  +  SFN+ +     S+     L  +  + N+L  ++P  ++   ++ 
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 245

Query: 795 HLNLSNNNLTGKIPLSTQLQSFNA--SSFAGNDLCGAPL 831
            + L NNN++           +N   +S++G  L   P+
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 1e-11
 Identities = 53/315 (16%), Positives = 96/315 (30%), Gaps = 45/315 (14%)

Query: 308 CNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
           C+L+ V    + L +   ++              LD++++ I           +NL TL 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDL--------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 61

Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVK 427
           L NN I  + P +F  L  L  L +  N+L   L E     L +L        ++   V 
Sbjct: 62  LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV- 119

Query: 428 HDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKF 487
            + +    +V LG +               K L Y+ + ++ I+ I              
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--------- 170

Query: 488 LDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFL 547
                               L  L ++ N ++         L  L     SF+   +   
Sbjct: 171 ------------------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-- 210

Query: 548 CYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSG------NLPNSLGS 601
                           +N    ++P     ++ ++V+ L NN  S         P     
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 270

Query: 602 ITSLVWLYLRKNRLS 616
             S   + L  N + 
Sbjct: 271 KASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 4e-11
 Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 9/234 (3%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN-LTKNTQLLFLSVNSN 516
                L+L N++I++I      K+   L  L +  N+             +L  L ++ N
Sbjct: 31  PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 517 NMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWM 576
            +      +   L  L    N  +                +  L        G     + 
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI--VVELGTNPLKSSGIENGAFQ 147

Query: 577 SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDE 636
             + L  +++++   +  +P  L    SL  L+L  N+++     SLK    LA L +  
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 637 NEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSG 690
           N              +  L  +  +N     +P  + D  ++Q++ L +NN+S 
Sbjct: 205 NSISAVDNGSL--ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 4/139 (2%)

Query: 105 LKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSS 164
              L+ L L  N          +  + NL  L LS      +    L N   L+ L L++
Sbjct: 170 PPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 165 NYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLA 224
           N L       L+   +++ + L + N+S             +      S  SL   P   
Sbjct: 229 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK-ASYSGVSLFSNPVQY 286

Query: 225 SPIPRG-LQNLTSLKHLDL 242
             I     + +     + L
Sbjct: 287 WEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 7e-04
 Identities = 20/95 (21%), Positives = 37/95 (38%)

Query: 713 VYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESV 772
           V +++ P  +LLD+  N  +     +  NLK L ++    N  +   P +   +  LE +
Sbjct: 25  VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 84

Query: 773 DFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKI 807
             S NQL     +   +L  L         +   +
Sbjct: 85  YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 119

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 1e-13
 Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 5/258 (1%)

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419
                 + L  N I  +   SF     L  L ++ N L    +                 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 420 NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFL 479
            QL       +    +L  L L  C +    P        LQYL L ++ +  +      
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTF 149

Query: 480 KSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSF 539
           +    L  L +  N+         +    L   +   N    +   +   +    +   F
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 540 SGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSL 599
           + ++S      +   ++L+ L+L DN    +     + +  L+  + S+++   +LP  L
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQRL 268

Query: 600 GSITSLVWLYLRKNRLSG 617
                     L  N L G
Sbjct: 269 ---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 3e-10
 Identities = 43/250 (17%), Positives = 78/250 (31%), Gaps = 19/250 (7%)

Query: 580 NLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF 639
             + + L  N+ S     S  +  +L  L+L  N L+     +      L  LD+ +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 640 VGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNL 699
           + ++         R+  L L         P     LA LQ L L DN L         +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 700 TGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRI 759
             +                     L +  N  S         L +L  +    N      
Sbjct: 153 GNLTH-------------------LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 760 PESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNAS 819
           P +   +  L ++    N LS    ++++ L  L +L L++N                  
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF 253

Query: 820 SFAGNDLCGA 829
             + +++  +
Sbjct: 254 RGSSSEVPCS 263

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 6e-10
 Identities = 41/272 (15%), Positives = 93/272 (34%), Gaps = 12/272 (4%)

Query: 249 SSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFC 308
            ++P  +   +  + + L  N +    + +     +     L+I       + R  A   
Sbjct: 24  QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRN-----LTILWLHSNVLARIDAAAF 76

Query: 309 NLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNL 368
              ++  +           +D  +      L +L +    +             L  L L
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 369 ANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKH 428
            +N++  L  ++F  L  L  L ++ N+++  + E  F  L  L    +  N++     H
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 429 DWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFL 488
            +    +L+ L L    + +   + L   + LQYL L ++        R L   + L+  
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKF 253

Query: 489 DVGLNQFHGKISNLTKNTQLLFLSVNSNNMSG 520
               ++    +        L    + +N++ G
Sbjct: 254 RGSSSEVPCSLPQRLAGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 46/306 (15%), Positives = 85/306 (27%), Gaps = 50/306 (16%)

Query: 500 SNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEG 559
             +   +Q +FL    N +S            L       +                 + 
Sbjct: 28  VGIPAASQRIFLH--GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85

Query: 560 LKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKI 619
               +  L+   P  +     L  L L         P     + +L +LYL+ N L    
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 620 PISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQ 679
             + ++   L  L +  N         F                           L  L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAF-------------------------RGLHSLD 180

Query: 680 ILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV 739
            L L  N ++   P    +L  ++T+                    +  NN S      +
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTL-------------------YLFANNLSALPTEAL 221

Query: 740 TNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLS 799
             L+ALQ +  + N +      +      L+    S +++   +PQ ++         L+
Sbjct: 222 APLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLA 277

Query: 800 NNNLTG 805
            N+L G
Sbjct: 278 ANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 50/278 (17%), Positives = 87/278 (31%), Gaps = 19/278 (6%)

Query: 122 QIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFL 181
            +P  I +    + + L   +   +         +L  L L SN L   +    +GL+ L
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 182 EHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLD 241
           E LDL      ++       + L  L  L L  C L          P   + L +L++L 
Sbjct: 83  EQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELG------PGLFRGLAALQYLY 135

Query: 242 LDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIP 301
           L  N   +   D       L  L L  N +      A   L S+  L L  N       P
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP 194

Query: 302 RSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFR 361
            +  +        L  ++L       L   +      L+ L +  +            + 
Sbjct: 195 HAFRDLG-----RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWA 248

Query: 362 NLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNG 399
            L     +++ +   +P+           ++  N L G
Sbjct: 249 WLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 7e-08
 Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 5/252 (1%)

Query: 485 LKFLDVGLNQFHGKISNLTKN-TQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSI 543
            + + +  N+     +   +    L  L ++SN ++       + L  L+  + S +  +
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 544 SHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSIT 603
                   +    L  L L    LQ   P  +     L+ L L +N       ++   + 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 604 SLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQ 663
           +L  L+L  NR+S     + +   +L  L + +N      P  F +    M + +   N 
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NN 212

Query: 664 FHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV--YREILPLV 721
                 + +  L  LQ L L DN               +   +  +  V     + L   
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 722 SLLDISRNNFSG 733
            L  ++ N+  G
Sbjct: 272 DLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 55/271 (20%), Positives = 82/271 (30%), Gaps = 20/271 (7%)

Query: 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSN 165
                + L  N    V       + RNL  L L       +       L+ L+ LDLS N
Sbjct: 32  AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 166 Y-LYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLA 224
             L   +     GL  L  L L                 L +L  L L + +L   P   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLD--RCGLQELGPGLFRGLAALQYLYLQDNALQALP--- 145

Query: 225 SPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTS 284
                  ++L +L HL L  N  +S           L+ L L  N +      A  +L  
Sbjct: 146 ---DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 285 VSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM 344
           +  L L  N         ++A    L+ + L       +           +   L+    
Sbjct: 203 LMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRARP------LWAWLQKFRG 255

Query: 345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVG 375
            SS +   L  +L          LA N + G
Sbjct: 256 SSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 2e-09
 Identities = 67/453 (14%), Positives = 117/453 (25%), Gaps = 18/453 (3%)

Query: 181 LEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHL 240
           ++ LD++   LS A  W      L     +RL +C L         I   L+   +L  L
Sbjct: 4   IQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLT--EARCKDISSALRVNPALAEL 60

Query: 241 DLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRI 300
           +L SN         + +        ++  SLQ       G     S L     +      
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL--- 117

Query: 301 PRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQF 360
                N      + L    L      +  +     S    S +  +S +      +    
Sbjct: 118 -HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 361 RNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGN 420
            N          +   + +S  QL  L+         N        A+   L    +G N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 421 QLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLK 480
           +L      +  P     +  L   ++              + L    S          L 
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 481 SASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFS 540
                   +  L       S   K+        +    S          + +  +    +
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH-FSSVLAQNRFLLELQISNNRLEDA 355

Query: 541 GSISHFLCYRVNETKSLEGLKLTDNYLQGE----IPDCWMSYQNLKVLKLSNNKFSGNLP 596
           G            +  L  L L D  +       +    ++  +L+ L LSNN       
Sbjct: 356 GVRELCQGLGQPGS-VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 597 NSLGSI-----TSLVWLYLRKNRLSGKIPISLK 624
             L          L  L L     S ++   L+
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 4e-08
 Identities = 52/457 (11%), Positives = 110/457 (24%), Gaps = 31/457 (6%)

Query: 108 LSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQF----VGMIPPQLGNLSDLQFLDLS 163
           +  LD+   +    +    +  ++  + + L D          I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 164 SNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTL 223
           SN L    V  +          ++ ++L            L S      +  +L     L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS------TLRTLPTLQEL 117

Query: 224 ASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLT 283
                        L    L             Y            + L+         ++
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 284 SVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLD 343
           +    +  + +  QG                       +++  I+   +      L S  
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 344 MRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSE 403
           +    +       L     L TL +    I     +  G L  +   +    +L+   +E
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGI---TAKGCGDLCRVLRAKESLKELSLAGNE 294

Query: 404 FHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYL 463
                   L    +        +                +    +RF   L    +    
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 354

Query: 464 NLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGK-----ISNLTKNTQLLFLSVNSNNM 518
             +      +      +  S L+ L +              + L  N  L  L +++N +
Sbjct: 355 AGVRELCQGLG-----QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 519 SGP--------LPLVSSNLVYLDFSNNSFSGSISHFL 547
                      +      L  L   +  +S  +   L
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 55/456 (12%), Positives = 122/456 (26%), Gaps = 18/456 (3%)

Query: 156 DLQFLDLSSNYL-YVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMAT--NTLPSLLELRL 212
           D+Q LD+    L        L  L   + + L    L++A    +++     P+L EL L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 213 SNCSLHHFPTLASPIPRGLQ-NLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSL 271
            +  L         + +GLQ     ++ L L +     +    L             +  
Sbjct: 63  RSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 272 QGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIF 331
              + DA   L     LD    +        S++        ++       +   + +  
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 332 SGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQ 391
                     +  +         + L      VT +   +    +  ++  +   L   +
Sbjct: 181 INEAGV---RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 392 IYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFP 451
           + D  +          +    + +                      +L   +        
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 452 QWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFL 511
           +                    +    F  +        +  N+F  ++       +   +
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 357

Query: 512 SVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEI 571
                 +  P     S L  L  ++   S S    L   +    SL  L L++N L    
Sbjct: 358 RELCQGLGQP----GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 572 PDCWMS-----YQNLKVLKLSNNKFSGNLPNSLGSI 602
               +         L+ L L +  +S  + + L ++
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 45/484 (9%), Positives = 110/484 (22%), Gaps = 48/484 (9%)

Query: 339 LESLDMRSSSI-YGHLTDQLGQFRNLVTLNLANNSI----VGLIPESFGQLSTLRELQIY 393
           ++SLD++   +      + L   +    + L +  +       I  +      L EL + 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 394 DNKLNGT----LSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSR 449
            N+L       + +       K+    +    LT           +   L        S 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR--TLPTLQELHLSD 121

Query: 450 FPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLL 509
                   + L    L      +   + +   ++        + +       LT +   +
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 510 FLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG 569
             +       G              S    S +         ++    E    ++     
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 570 EIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTAL 629
            + +      +      +   +   +          V       +        L +  A 
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLS 689
              +            W              S+            ++  ++ D     L 
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 690 GAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGE----ILSEVTNLKAL 745
             + +  S L                       +L ++  + S      + + +    +L
Sbjct: 362 QGLGQPGSVLR----------------------VLWLADCDVSDSSCSSLAATLLANHSL 399

Query: 746 QSINFSFNTFTGRIPESIGT-----MRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN 800
           + ++ S N         +          LE +       S E+         L  L    
Sbjct: 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED------RLQALEKDK 453

Query: 801 NNLT 804
            +L 
Sbjct: 454 PSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 724 LDISRNNFSGEILSEV-TNLKALQSINFSFNTFTGR----IPESIGTMRALESVDFSVNQ 778
           LDI     S    +E+   L+  Q +       T      I  ++    AL  ++   N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 779 LSGEIPQSMSSLTFLNHLNLSNNNLTG 805
           L       +          +   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 6e-05
 Identities = 49/473 (10%), Positives = 106/473 (22%), Gaps = 35/473 (7%)

Query: 236 SLKHLDLDSNHFNSS-IPDWLYKFSPLECLNLRNNSLQG----TISDAIGNLTSVSWLDL 290
            ++ LD+     + +   + L      + + L +  L       IS A+    +++ L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSSSIY 350
             N  L       +       S  ++ + L               +              
Sbjct: 63  RSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 351 GHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLT 410
             L D   Q      L+         +       ++   L                 N  
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 411 KLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRI 470
             +  RV       +     +   +L + G+ +                 +     N   
Sbjct: 182 NEAGVRVLCQG--LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 471 SDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLV 530
                            L        G  +    +   +  +  S            +  
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 531 YLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNK 590
                             +  + + +        + L        +   N ++    +  
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL---EDAG 356

Query: 591 FSGNLPNSLGSITSLVWLYLRKNRLSGK----IPISLKNCTALASLDVDENEFVGNIPTW 646
                       + L  L+L    +S      +  +L    +L  LD+  N         
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-------- 408

Query: 647 FGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNL 699
            G+     LV  +R                 L+ L L D   S  +   +  L
Sbjct: 409 LGDAGILQLVESVRQPGCL------------LEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 745 LQSINFSFNTFT-GRIPESIGTMRALESVDFSVNQLSGE----IPQSMSSLTFLNHLNLS 799
           +QS++      +  R  E +  ++  + V      L+      I  ++     L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 800 NNNLTGKIP--LSTQLQSFNAS 819
           +N L       +   LQ+ +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCK 85

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 55/463 (11%), Positives = 118/463 (25%), Gaps = 43/463 (9%)

Query: 309 NLKSVNLRGVHLSQE-ISEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLN 367
           +++S++++   LS    +E+L +   C    L+   +  +     ++  L     L  LN
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC-KDISSALRVNPALAELN 61

Query: 368 LANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVK 427
           L +N +  +      Q       +I    L           +   +   +   Q      
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 428 HDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKF 487
           +        +                L             + +    P     + S    
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 488 LDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNL------VYLDFSNNSFSG 541
            + G+      + +     + L L            L                SN     
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 542 SISHFLCYRVNETKSLEGLKLTD-----------------NYLQGEIPDCWMSYQNLKVL 584
            ++      ++ +  L  L + +                      E+        +    
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 585 KLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIP 644
            L               + S  +     +  S  +  +        S +  E+  V  + 
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 645 TWFGERFSRMLVLILRSNQFHG----PLPKTICDLAFLQILDLADNNLSGAIPKCISNLT 700
              G+  S + VL L            L  T+     L+ LDL++N L  A    +    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE-- 419

Query: 701 GMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLK 743
                         R+   L+  L +    +S E+   +  L+
Sbjct: 420 ------------SVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 526 SSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE----IPDCWMSYQNL 581
           S ++  LD      S +    L   +   +  + ++L D  L       I         L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG 617
             L L +N+      + +          ++K  L  
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 40/207 (19%), Positives = 64/207 (30%), Gaps = 17/207 (8%)

Query: 111 LDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVD 170
           ++    +     +P  +   ++   L+LS+          L   + L  L+L    L   
Sbjct: 15  VNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 171 NVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRG 230
            V        L  L    ++           +       L         F  L S     
Sbjct: 71  QVDG-----TLPVLGTLDLS------HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 231 LQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDL 290
           L+ L  L+ L L  N   +  P  L     LE L+L NN+L    +  +  L ++  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 291 SINIGLQGRIPRSMANFCNLKSVNLRG 317
             N      IP+       L    L G
Sbjct: 180 QENSLY--TIPKGFFGSHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 32/180 (17%), Positives = 50/180 (27%), Gaps = 15/180 (8%)

Query: 106 KHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSN 165
           K  + L LS N          +     L  LNL   +   +       +     L  +  
Sbjct: 31  KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 166 YLYVDNVWWLSGLSFLEHLDLRSVNL--------SKASDWLMATNTLPSLLELRLSNCSL 217
                    L  L+ L+    R  +L         +  +  +  N L +L    L+    
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 218 HHFPTLA-----SPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ 272
               +LA           L  L +L  L L  N    +IP   +    L    L  N   
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 22/183 (12%), Positives = 46/183 (25%), Gaps = 8/183 (4%)

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGG 419
            ++   L+L+ N +      +    + L +L +   +L     +     L  L       
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 420 NQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFL 479
             L    +         V+                  Q+     N L +    +      
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 480 KSASQLKFLDVGLNQFHGKISN-LTKNTQLLFLSVNSNNMSGPLPLV--SSNLVYLDFSN 536
                 + L +  N      +  L     L  L +  N++         S  L +     
Sbjct: 150 L-----EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

Query: 537 NSF 539
           N +
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 35/212 (16%), Positives = 60/212 (28%), Gaps = 25/212 (11%)

Query: 202 NTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL 261
           + + S LE+     +L   P     +P           L L  N   +     L  ++ L
Sbjct: 7   SKVASHLEVNCDKRNLTALP---PDLP------KDTTILHLSENLLYTFSLATLMPYTRL 57

Query: 262 ECLNLRNNSLQGTISDAI-GNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHL 320
             LNL    L     D     L ++      +                ++    L  + L
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 321 SQEISEILDIFSGCVSNGLESLD--------------MRSSSIYGHLTDQLGQFRNLVTL 366
                           N L++L               + ++++       L    NL TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 367 NLANNSIVGLIPESFGQLSTLRELQIYDNKLN 398
            L  NS+   IP+ F     L    ++ N   
Sbjct: 178 LLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 30/201 (14%), Positives = 51/201 (25%), Gaps = 24/201 (11%)

Query: 579 QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENE 638
           ++  +L LS N        +L   T L  L      L       L+    L  L   +  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLN-----LDRAELTKLQVDGTLPVLGTLDLS 85

Query: 639 FVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISN 698
                      +    L ++  S      LP                 N    +P  +  
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR 758
            T                  P +  L ++ NN +      +  L+ L ++    N+    
Sbjct: 146 PT------------------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186

Query: 759 IPESIGTMRALESVDFSVNQL 779
           IP+       L       N  
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPW 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 7/231 (3%)

Query: 71  GNVTGHILELNLRNPSTSNPRSMLVGKVNPALLDLKHLSYLDLSSNDFQGVQIPRFIGSM 130
            +VTG +L   +            + +          + ++DLS++  +   +   +   
Sbjct: 14  PDVTGRLLSQGVIAFRCPR---SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 70

Query: 131 RNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVN 190
             L+ L+L   +    I   L   S+L  L+LS            + LS    LD  +++
Sbjct: 71  SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLS 129

Query: 191 LSKASDWLMATNTLPSLLELRLSNC--SLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN 248
                        +  + E                +       +    +     DS    
Sbjct: 130 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 189

Query: 249 SSIPDWLYKFSPLECLNLRN-NSLQGTISDAIGNLTSVSWLDLSINIGLQG 298
           +      ++ + L+ L+L     +       +G + ++  L +   +    
Sbjct: 190 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 51/283 (18%), Positives = 97/283 (34%), Gaps = 19/283 (6%)

Query: 111 LDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVD 170
           LDL+  +       R +   + +       +     +         +Q +DLS++ + V 
Sbjct: 5   LDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 171 NV-WWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIP- 228
            +   LS  S L++L L  + LS      +A     +L+ L LS CS      L + +  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 229 -RGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSW 287
              L  L      D    H   ++       + L     R N  +  +S  +    ++  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 288 LDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDMRSS 347
           LDLS ++ L+    +       L+ ++L        I E L       +  L++L     
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLS--RCYDIIPETLLELGEIPT--LKTLQ---- 231

Query: 348 SIYGHLTDQLGQ--FRNLVTLNLANNSIVGLIPESFGQLSTLR 388
            ++G + D   Q     L  L +  +    +   + G      
Sbjct: 232 -VFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 32/224 (14%), Positives = 68/224 (30%), Gaps = 14/224 (6%)

Query: 488 LDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLP--LVSSNLVYLDFSNNSFSGSISH 545
           LD+     H  ++    +  ++      + M  PL        + ++D SN+    S   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST-- 62

Query: 546 FLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLP--------N 597
            L   +++   L+ L L    L   I +      NL  L LS                 +
Sbjct: 63  -LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 598 SLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVL 657
            L  +         +  +   +    +  T L      +N    ++ T      + + + 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 658 ILRSNQFHGPLPKTICDLAFLQILDLAD-NNLSGAIPKCISNLT 700
           +  S        +    L +LQ L L+   ++       +  + 
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 5e-06
 Identities = 33/139 (23%), Positives = 48/139 (34%), Gaps = 9/139 (6%)

Query: 147 IPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPS 206
           +   +    D     L    L  D    L   +    L+ RS   +           +P 
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATLRIIE---ENIPE 66

Query: 207 LLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNL 266
           LL L LSN  L+        +   +Q   +LK L+L  N   S       K   LE L L
Sbjct: 67  LLSLNLSNNRLYRLD----DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 267 RNNSLQGTISDAIGNLTSV 285
             NSL  T  D    ++++
Sbjct: 123 DGNSLSDTFRDQSTYISAI 141

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 52/315 (16%), Positives = 93/315 (29%), Gaps = 22/315 (6%)

Query: 334 CVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS--TLRELQ 391
           C+      L++ +  +   L +      +L +L  + NS+  L PE    L    +    
Sbjct: 35  CLDRQAHELELNNLGL-SSLPELPP---HLESLVASCNSLTEL-PELPQSLKSLLVDNNN 89

Query: 392 IYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFP 451
           +        L E+   +  +L       N    ++        + +     +    +   
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 452 QWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFL 511
             L     LQ L  L +  +D   ++ L          V  N    ++  L     L  +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 512 SVNSNNMSGPLPLVSSNLVYLDFSNNSFS-------GSISHFLCYRVNETKSLEGLKLTD 564
             ++N +     L  S        N            +         +    L       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 565 NYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLK 624
           N    EI        +L+ L +SNNK    LP        L  L    N L+ ++P   +
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA-EVPELPQ 324

Query: 625 NCTALASLDVDENEF 639
           N   L  L V+ N  
Sbjct: 325 N---LKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 15/89 (16%)

Query: 196 DWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWL 255
           +     +  PSL EL +SN  L   P L             L+ L    NH  + +P+  
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIELPAL----------PPRLERLIASFNHL-AEVPELP 323

Query: 256 YKFSPLECLNLRNNSLQGTISDAIGNLTS 284
                L+ L++  N L+    D   ++  
Sbjct: 324 QN---LKQLHVEYNPLR-EFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 42/335 (12%), Positives = 88/335 (26%), Gaps = 24/335 (7%)

Query: 206 SLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLN 265
              EL L+N  L   P L             L+ L    N   + +P+       L   N
Sbjct: 39  QAHELELNNLGLSSLPEL----------PPHLESLVASCNSL-TELPELPQSLKSLLVDN 87

Query: 266 LRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEIS 325
               +L            S + L+    +     +     +  +LK +      L    +
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 326 EILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLS 385
               +        L  L    +                  +   N        ++   L+
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 386 TLRELQIYDNKLNGTLSEFHFANLTKLSWFR----VGGNQLTFEVKHDWIPPFQLVALGL 441
           T+         L          N+                     ++ +    +L     
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 442 HNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISN 501
           +     +           L+ LN+ N+++ ++          +L+ L    N    ++  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA-----LPPRLERLIASFNHL-AEVPE 321

Query: 502 LTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSN 536
           L +N  L  L V  N +    P +  ++  L  ++
Sbjct: 322 LPQN--LKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 727 SRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQS 786
             N  S EI S      +L+ +N S N     +P        LE +  S N L+ E+P+ 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPEL 322

Query: 787 MSSLTFLNHLNLSNNNLTGKIPLSTQLQSFNASS 820
             +L     L++  N L     +   ++    +S
Sbjct: 323 PQNLK---QLHVEYNPLREFPDIPESVEDLRMNS 353

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG 641
           +VL L++   +      L  +  +  L L  NRL    P       AL  L+V +     
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 642 NIPTWFGERFSRMLVLILRSNQF-HGPLPKTICDLAFLQILDLADNNLSG 690
                      R+  L+L +N+       + +     L +L+L  N+L  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 12/114 (10%)

Query: 134 RYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSK 193
           R L+L+       +   L  L  +  LDLS N L          L+ L  L++   +   
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQAS-DN 53

Query: 194 ASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHF 247
           A + +     LP L EL L N  L           + L +   L  L+L  N  
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQS-----AAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 110 YLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYV 169
            L L+  D     +   +  +  + +L+LS  +   + PP L  L  L+ L  S N L  
Sbjct: 2   VLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN 57

Query: 170 DNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPR 229
            +         L+ L L +  L +++  +    + P L+ L L   SL     +   +  
Sbjct: 58  VDGVANL--PRLQELLLCNNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 230 GLQNLTSL 237
            L +++S+
Sbjct: 115 MLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 24/114 (21%)

Query: 724 LDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIP---------------------ES 762
           L ++  + +  +L  +  L  +  ++ S N      P                     + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 763 IGTMRALESVDFSVNQL-SGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQS 815
           +  +  L+ +    N+L      Q + S   L  LNL  N+L  +  +  +L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 13/124 (10%)

Query: 210 LRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNN 269
           L L++  L             L+ L  + HLDL  N   +  P      + L CL +   
Sbjct: 3   LHLAHKDLTVLC--------HLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQA 50

Query: 270 SLQGTIS-DAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEIL 328
           S     + D + NL  +  L L  N   Q    + + +   L  +NL+G  L QE     
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 329 DIFS 332
            +  
Sbjct: 111 RLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 511 LSVNSNNMSGPLPLVS-SNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQG 569
           L +   +++    L     + +LD S+N                  +L  L++       
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL--------AALRCLEVLQASDNA 54

Query: 570 EI-PDCWMSYQNLKVLKLSNNKF-SGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCT 627
               D   +   L+ L L NN+         L S   LV L L+ N L  +  I  +   
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 628 ALASL 632
            L S+
Sbjct: 115 MLPSV 119

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 33/312 (10%), Positives = 83/312 (26%), Gaps = 19/312 (6%)

Query: 103 LDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQF----VGMIPPQLGNLSDLQ 158
           ++ K L    +++ D +   +   +    +++ + LS           +   + +  DL+
Sbjct: 5   IEGKSLKLDAITTEDEK--SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 159 FLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLH 218
             + S  +           L  L    L+   L        A         +   +    
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 219 HFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDA 278
                      G Q    +     +      +      +        L N S++      
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 279 IGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNG 338
             +    +   +   I  +G     +      + + +  +  +          +  + + 
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 339 LESLDMR------SSSIYGHLTDQLGQFRN--LVTLNLANNSIVG-----LIPESFGQLS 385
               ++       S+     + D   +  N  L TL L  N I       L      ++ 
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 386 TLRELQIYDNKL 397
            L  L++  N+ 
Sbjct: 303 DLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 43/313 (13%), Positives = 85/313 (27%), Gaps = 19/313 (6%)

Query: 100 PALLDLKHLSYLDLSSNDFQG---VQIPRFIGSMRNLRYLNLSD---TQFVGMIPPQLGN 153
             LL+   +  + LS N         +   I S ++L     SD    +    IP  L  
Sbjct: 25  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 84

Query: 154 LSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLS 213
           L           +    +       +    +D  S +      +L      P        
Sbjct: 85  LLQALL-KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 143

Query: 214 NCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWL-----YKFSPLECLNLRN 268
                     A   P     +     L+  S    +            K           
Sbjct: 144 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 203

Query: 269 NSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEI-SEI 327
             L          L  +   D +        +  ++ ++ NL+ + L    LS    + +
Sbjct: 204 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 263

Query: 328 LDIFSGCVSNGLESLDMRSSSIYGHLTDQL-----GQFRNLVTLNLANNSIVGLIPESFG 382
           +D FS   + GL++L ++ + I       L      +  +L+ L L  N       +   
Sbjct: 264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVD 322

Query: 383 QLSTLRELQIYDN 395
           ++  +   +    
Sbjct: 323 EIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 39/318 (12%), Positives = 89/318 (27%), Gaps = 19/318 (5%)

Query: 125 RFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHL 184
           RF    ++L+   ++       +   L     ++ + LS N +  +   WL   +     
Sbjct: 2   RFSIEGKSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWL-SENIASKK 59

Query: 185 DLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDS 244
           DL     S      +      +L  L  +        T+                  L  
Sbjct: 60  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 119

Query: 245 NHFNSSIPDWLYKFSPLECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSM 304
           +     +        P     +     +  ++    N   +  +    N    G +    
Sbjct: 120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179

Query: 305 ANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESL-------DMRSSSIYGHLTDQL 357
             F + + ++   +  +    E ++          + L       +  +      L   L
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239

Query: 358 GQFRNLVTLNLANNSIVGLIPE------SFGQLSTLRELQIYDNKLNG----TLSEFHFA 407
             + NL  L L +  +            S  +   L+ L++  N++      TL      
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 408 NLTKLSWFRVGGNQLTFE 425
            +  L +  + GN+ + E
Sbjct: 300 KMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 43/354 (12%), Positives = 109/354 (30%), Gaps = 38/354 (10%)

Query: 309 NLKSVNLRGVHLSQE-ISEILDIFSGCVSNGLESLDMRSSSI----YGHLTDQLGQFRNL 363
           +++  +L+   ++ E    +  +     S  ++ + +  ++I       L++ +   ++L
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDS--VKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 364 VTLNLANNSIVGLIPESFGQLSTLRELQIYDNKL--NGTLSEFHFANLTKLSWFRVGGNQ 421
                ++     +  E    L  L +  +   KL               +     +  + 
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 422 LTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKS 481
               +              +          +   +   L+ +    +R+ +     + K+
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 482 ASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSG 541
               + L       +G      ++  L  L+                L  LD  +N+F+ 
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE------------LKVLDLQDNTFTH 229

Query: 542 SISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSY------QNLKVLKLSNNKFSGNL 595
             S  L   +    +L  L L D  L        +          L+ L+L  N+   + 
Sbjct: 230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 289

Query: 596 PNSLGSI-----TSLVWLYLRKNRLS--GKIPISLKNCTALASL----DVDENE 638
             +L ++       L++L L  NR S    +   ++   +        ++D+ E
Sbjct: 290 VRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 343

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 8/142 (5%)

Query: 100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQF 159
               +      LDL         I     ++     ++ SD +           L  L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 160 LDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHH 219
           L +++N +          L  L  L L + +L +    L    +L SL  L +    + +
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG-DLDPLASLKSLTYLCILRNPVTN 126

Query: 220 FPTLASPIPRGLQNLTSLKHLD 241
                  +   +  +  ++ LD
Sbjct: 127 KKHYRLYV---IYKVPQVRVLD 145

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 36/225 (16%), Positives = 75/225 (33%), Gaps = 18/225 (8%)

Query: 325 SEILDIFSGCVSNGLESLDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQL 384
           + I  IF          +    S++   +T        + TL+     +  +  E    L
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYL 62

Query: 385 STLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNC 444
           + L  L++ DN++       +   +T+L         ++       I    L +  + + 
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 445 YVGSRFPQWLHSQKHLQYL------------NLLNSRISDIFPIRFLKSASQLKFLDVGL 492
              +           L  +              L+   + +  +  L + S+L  L    
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 493 NQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS-SNLVYLDFSN 536
           N+    IS L     L+ + + +N +S   PL + SNL  +  +N
Sbjct: 183 NKISD-ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 23/199 (11%)

Query: 104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLS 163
           DL  ++ L         ++    +  + NL  L L D Q   + P       +L  +   
Sbjct: 39  DLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAPL-----KNLTKITEL 90

Query: 164 SNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTL 223
                                   +         L   + L  L        ++     L
Sbjct: 91  ELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL 150

Query: 224 ASP-----------IPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRNNSLQ 272
            +                L NL+ L  L  D N  +   P  L     L  ++L+NN + 
Sbjct: 151 TNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208

Query: 273 GTISDAIGNLTSVSWLDLS 291
                 + N +++  + L+
Sbjct: 209 DVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 21/191 (10%)

Query: 458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNN 517
             +  L+   + ++ I  +++L +   L  L++  NQ                    +  
Sbjct: 41  DGITTLSAFGTGVTTIEGVQYLNN---LIGLELKDNQITDLAPLKNLTKITELELSGNPL 97

Query: 518 MSGPLPLVSSNLVYLDFSNNSFSG--------------SISHFLCYRVNETKSLEGLKLT 563
            +        ++  LD ++   +                  + +              L+
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157

Query: 564 DNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISL 623
               Q        +   L  LK  +NK S   P  L S+ +L+ ++L+ N++S   P  L
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L 213

Query: 624 KNCTALASLDV 634
            N + L  + +
Sbjct: 214 ANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 26/222 (11%), Positives = 65/222 (29%), Gaps = 14/222 (6%)

Query: 579 QNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENE 638
            N   +    +  +  +  +   +  +  L      ++  I   ++    L  L++ +N+
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQ 74

Query: 639 FVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISN 698
                          +  +       +     +              +     +      
Sbjct: 75  I------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 699 LTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR 758
               V             +  L +L  +S  N     L+ + NL  L ++    N  +  
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 759 IPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN 800
            P  + ++  L  V    NQ+S   P  +++ + L  + L+N
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 38/219 (17%), Positives = 64/219 (29%), Gaps = 13/219 (5%)

Query: 360 FRNLVTLNLANNSIVGLIPESFGQLSTLRE--LQIYDNKLNGTLSEFHFANLTKLSWFRV 417
            RN + L      +  +   +F     L +  +   D         F             
Sbjct: 28  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 418 GGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIR 477
             N L    +     P     L  +           +HS + +      N  I  I    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 478 FLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVS----SNLVYLD 533
           F+  + +   L +  N      +     TQL  L+++ NN    LP       S  V LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 534 FSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIP 572
            S        S+ L       ++L+ L+    Y   ++P
Sbjct: 208 ISRTRIHSLPSYGL-------ENLKKLRARSTYNLKKLP 239

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 20/193 (10%)

Query: 359 QFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVG 418
            F   +  NL   S+   + ++  +L+++ ++   ++ +    S      L  ++   + 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 419 GNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLH---------SQKHLQYLNLLNSR 469
           GN+LT       +     + L  +     S                    +  L  L   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 470 ISDIFPIRFLKSASQLKFLDVGL-----NQFHGKISNLTKNTQLLFLSVNSNNMSGPLPL 524
            S       +   + L  L         +     I  L   T+L  L ++ N++S    L
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRAL 196

Query: 525 VS-SNLVYLDFSN 536
               NL  L+  +
Sbjct: 197 AGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 11/171 (6%)

Query: 104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVG------MIPPQLGNLSDL 157
           +L  +  +  +++D + VQ    I  + N+  L L+  +         +       L + 
Sbjct: 44  ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN 100

Query: 158 QFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSL 217
           +  DLSS              + +  ++         S +L         +  RL+    
Sbjct: 101 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDT 160

Query: 218 HHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLECLNLRN 268
                        L  LT L++L L  NH +      L     L+ L L +
Sbjct: 161 LSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	840
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.46
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.82

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.1e-38  Score=335.01  Aligned_cols=293  Identities=31%  Similarity=0.510  Sum_probs=202.1

Q ss_pred             CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc--cccceecCCCC--CCEEEEEcCCCCCCCCCccccc--ccccccc
Q 003200           30 GCLETERRALLRFKQDLQDPSNRLASWTGDGDCC--TWAGVACGNVT--GHILELNLRNPSTSNPRSMLVG--KVNPALL  103 (840)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c--~w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~--~~~~~~~  103 (840)
                      -|.++||+||++||+++.||. .+++|..++|||  .|+||+|+..+  +||++|+|+++       .+.|  .+|++++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~-------~l~g~~~lp~~l~   73 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-------NLPKPYPIPSSLA   73 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-------CCSSCEECCGGGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC-------CCCCCCCCChHHh
Confidence            499999999999999999875 699999889999  49999998643  48999999986       4554  5677777


Q ss_pred             CCCCCCEEeCCC-CCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCC
Q 003200          104 DLKHLSYLDLSS-NDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLE  182 (840)
Q Consensus       104 ~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~  182 (840)
                      ++++|++|||++ |.+.|. +|..++++++|++|+|++|++.+..|..+..+.+|+++++++|.+...            
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~------------  140 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT------------  140 (313)
T ss_dssp             GCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC------------
T ss_pred             cCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccccccc------------
Confidence            777777777775 666663 777777777777777777777776666666666666666666543321            


Q ss_pred             EEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCC-
Q 003200          183 HLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPL-  261 (840)
Q Consensus       183 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-  261 (840)
                                                                  +|..+..+++|+++++++|.+.+.+|..+..+..+ 
T Consensus       141 --------------------------------------------~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~  176 (313)
T d1ogqa_         141 --------------------------------------------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             --------------------------------------------CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             --------------------------------------------CchhhccCcccceeeccccccccccccccccccccc
Confidence                                                        22566777777777777777777777777777665 


Q ss_pred             cEEEcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCE
Q 003200          262 ECLNLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLES  341 (840)
Q Consensus       262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~  341 (840)
                      +.+++++|++++..|..+..+..+ .+++.. +...+.+|..+..+++++.++++++.+.+.++                
T Consensus       177 ~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~----------------  238 (313)
T d1ogqa_         177 TSMTISRNRLTGKIPPTFANLNLA-FVDLSR-NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG----------------  238 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCCCS-EEECCS-SEEEECCGGGCCTTSCCSEEECCSSEECCBGG----------------
T ss_pred             cccccccccccccccccccccccc-cccccc-cccccccccccccccccccccccccccccccc----------------
Confidence            777788888877777777666544 577776 55666677777766666666666666554433                


Q ss_pred             EEccCCcccccCccccCCCCCCCEEEccCCcccccccccccCCCCCCEEEccCCccccccChhhhccCCCCCEEEccCcc
Q 003200          342 LDMRSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESFGQLSTLRELQIYDNKLNGTLSEFHFANLTKLSWFRVGGNQ  421 (840)
Q Consensus       342 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~  421 (840)
                                    .++.+++|+.|++++|++++.+|..|+++++|++|+|++|+++|.+|.  +.++++|+.+++++|+
T Consensus       239 --------------~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         239 --------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             --------------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSS
T ss_pred             --------------ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHHhCCCc
Confidence                          234445555555555555555555555555555555555555555553  3455555555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.2e-33  Score=296.41  Aligned_cols=259  Identities=30%  Similarity=0.554  Sum_probs=240.1

Q ss_pred             CcccEEeccCCcCcc--ccCccccCCCCcCEEEccC-CcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcE
Q 003200          555 KSLEGLKLTDNYLQG--EIPDCWMSYQNLKVLKLSN-NKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALAS  631 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  631 (840)
                      ..++.|++++|.+++  .+|..++++++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468899999999887  4789999999999999986 8999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCcccc-ceeecccccccccCCccccccccCcccccccC
Q 003200          632 LDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFL-QILDLADNNLSGAIPKCISNLTGMVTVKSFTG  710 (840)
Q Consensus       632 L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  710 (840)
                      +++++|.+.+.+|.++. .++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..         
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~---------  199 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC---------
T ss_pred             cccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            99999999999999988 79999999999999999999999888876 88999999999999988776543         


Q ss_pred             cccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCC
Q 003200          711 SVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSL  790 (840)
Q Consensus       711 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  790 (840)
                                 ..++++++...+.+|..+..+++|+.+++++|.+.+.+| .++.+++|+.||+++|+++|.+|+.++++
T Consensus       200 -----------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L  267 (313)
T d1ogqa_         200 -----------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             -----------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             -----------ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCC
Confidence                       469999999999999999999999999999999997766 58999999999999999999999999999


Q ss_pred             CCCCeEeccCCcccccCCCCCcCCCcCcCCCCCC-CCCCCCCCCCCC
Q 003200          791 TFLNHLNLSNNNLTGKIPLSTQLQSFNASSFAGN-DLCGAPLPKNCT  836 (840)
Q Consensus       791 ~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn-~lcg~~~~~~c~  836 (840)
                      ++|++|+|++|+|+|.||+.+.+.+++..+|.|| .|||.|++ .|+
T Consensus       268 ~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c~  313 (313)
T d1ogqa_         268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             TTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred             CCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CCC
Confidence            9999999999999999999999999999999999 89999997 885

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.5e-25  Score=242.10  Aligned_cols=208  Identities=29%  Similarity=0.389  Sum_probs=147.4

Q ss_pred             cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC
Q 003200          556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD  635 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls  635 (840)
                      .........|...  ....+..+++++.+++++|.+++..|  +...++|++|++++|+++.  +..+..+++|+.|+++
T Consensus       176 ~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~  249 (384)
T d2omza2         176 TLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA  249 (384)
T ss_dssp             TCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECC
T ss_pred             ccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccc
Confidence            3334444444332  23445667777777777777775543  4455677777777777763  2356777778888888


Q ss_pred             CCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccc
Q 003200          636 ENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYR  715 (840)
Q Consensus       636 ~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  715 (840)
                      +|++++..+  +. .+++|++|++++|++++..  .+..++.++.+++++|.+.+ + ..+..++++             
T Consensus       250 ~n~l~~~~~--~~-~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l-------------  309 (384)
T d2omza2         250 NNQISNLAP--LS-GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-I-SPISNLKNL-------------  309 (384)
T ss_dssp             SSCCCCCGG--GT-TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTC-------------
T ss_pred             cCccCCCCc--cc-ccccCCEeeccCcccCCCC--cccccccccccccccccccc-c-cccchhccc-------------
Confidence            887775433  22 5677888888888777543  36677888888888888773 2 234444444             


Q ss_pred             ccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCe
Q 003200          716 EILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNH  795 (840)
Q Consensus       716 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  795 (840)
                            +.|++++|++++..  .+..+++|++|++++|++++ +| .++++++|++|++++|++++..|  +.++++|++
T Consensus       310 ------~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~  377 (384)
T d2omza2         310 ------TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQ  377 (384)
T ss_dssp             ------SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred             ------CeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence                  88999999988643  37888999999999999884 55 58899999999999999986554  788999999


Q ss_pred             EeccCC
Q 003200          796 LNLSNN  801 (840)
Q Consensus       796 L~ls~N  801 (840)
                      |++++|
T Consensus       378 L~L~~N  383 (384)
T d2omza2         378 LGLNDQ  383 (384)
T ss_dssp             EECCCE
T ss_pred             eeCCCC
Confidence            999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.1e-24  Score=235.10  Aligned_cols=188  Identities=26%  Similarity=0.341  Sum_probs=131.0

Q ss_pred             CCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEe
Q 003200          554 TKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       554 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      +++++.+++++|.+++..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++..  .+..+++|++|+
T Consensus       196 l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEee
Confidence            4566666666666665433  34556677777777776642  34666677777777777776433  266677777777


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      +++|++++..+  +. .++.++.+.++.|.+.+.  ..+..+++++.|++++|++++..|  +..+++|           
T Consensus       270 l~~~~l~~~~~--~~-~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L-----------  331 (384)
T d2omza2         270 LGANQISNISP--LA-GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKL-----------  331 (384)
T ss_dssp             CCSSCCCCCGG--GT-TCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTC-----------
T ss_pred             ccCcccCCCCc--cc-cccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCC-----------
Confidence            77777764322  22 567777777777777653  346677888888888888875322  4554444           


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCC
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVN  777 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  777 (840)
                              ++|++++|++++ ++ .++++++|++|++++|++++..|  ++++++|++|+|++|
T Consensus       332 --------~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 --------QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             --------CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             --------CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence                    888898888874 33 68889999999999999986554  788999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-23  Score=218.89  Aligned_cols=272  Identities=16%  Similarity=0.214  Sum_probs=221.1

Q ss_pred             cccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEc
Q 003200          507 QLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKL  586 (840)
Q Consensus       507 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  586 (840)
                      ..+.++.++..++..++..++++++|++++|+++...+..    +.++++|++|++++|.+....|..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~----f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhH----hhccccccccccccccccccchhhhhCCCccCEecc
Confidence            5567777777777665556788999999999988765543    455889999999999999888888999999999999


Q ss_pred             cCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccc--cCChhhhhccCCccEEEccCCcc
Q 003200          587 SNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVG--NIPTWFGERFSRMLVLILRSNQF  664 (840)
Q Consensus       587 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~l~~L~~L~l~~n~l  664 (840)
                      ++|+++. +|..+  ...++.|++.+|.+.+..+..+.....++.++...|....  ..+..+. .+++|+.+++++|.+
T Consensus        87 ~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~-~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          87 SKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNI  162 (305)
T ss_dssp             CSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCC
T ss_pred             cCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccc-cccccCccccccCCc
Confidence            9999985 45443  3678999999999987777778888889999998886432  3344444 788999999999998


Q ss_pred             cccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCC
Q 003200          665 HGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKA  744 (840)
Q Consensus       665 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~  744 (840)
                      .. +|..+  +++|+.|++++|..++..+..+..++.+                   +.|++++|.+++..+..+.++++
T Consensus       163 ~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l-------------------~~L~~s~n~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         163 TT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL-------------------AKLGLSFNSISAVDNGSLANTPH  220 (305)
T ss_dssp             CS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTC-------------------CEEECCSSCCCEECTTTGGGSTT
T ss_pred             cc-cCccc--CCccCEEECCCCcCCCCChhHhhccccc-------------------ccccccccccccccccccccccc
Confidence            75 44443  6789999999999998888888877766                   89999999999888889999999


Q ss_pred             CCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcc------ccCCCCCCeEeccCCccc-ccCCC
Q 003200          745 LQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQS------MSSLTFLNHLNLSNNNLT-GKIPL  809 (840)
Q Consensus       745 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~L~ls~N~l~-g~ip~  809 (840)
                      |++|+|++|+++ .+|++|..+++|++|+|++|+++..-+..      ...+.+|+.|++++|++. +.+|.
T Consensus       221 L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         221 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             ceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            999999999998 67889999999999999999998432222      345788999999999984 56654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.9e-23  Score=214.84  Aligned_cols=266  Identities=17%  Similarity=0.221  Sum_probs=130.0

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEc
Q 003200          107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDL  186 (840)
Q Consensus       107 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L  186 (840)
                      ..+.+|-+++.++  .+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....+..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~--~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC--ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            3445555555555  3455443  45666666666665444445566666666666666655555555555666666666


Q ss_pred             cCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCC--CCCcccccCCCCCcEE
Q 003200          187 RSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFN--SSIPDWLYKFSPLECL  264 (840)
Q Consensus       187 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L  264 (840)
                      ++|+++.++.     .....++.|++.+|.+..++.      ..+.....++.++...|...  ...+..+..+++|+++
T Consensus        87 ~~n~l~~l~~-----~~~~~l~~L~~~~n~l~~l~~------~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          87 SKNQLKELPE-----KMPKTLQELRVHENEITKVRK------SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  155 (305)
T ss_dssp             CSSCCSBCCS-----SCCTTCCEEECCSSCCCBBCH------HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             cCCccCcCcc-----chhhhhhhhhccccchhhhhh------hhhhccccccccccccccccccCCCccccccccccCcc
Confidence            5555554432     112345555555555544432      33444444555555544322  1223344445555555


Q ss_pred             EcccCccccccchhhhcCCCCcEEecccccCccccCcccccCCCCCcEEEcCCCcccccchHHHHhhccCCCCCCCEEEc
Q 003200          265 NLRNNSLQGTISDAIGNLTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGVHLSQEISEILDIFSGCVSNGLESLDM  344 (840)
Q Consensus       265 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  344 (840)
                      ++++|.++ .+|..  .+++|+.|++++ +...+..+..+.+++.+++|++++|.+.+..+..+..++     +|++|++
T Consensus       156 ~l~~n~l~-~l~~~--~~~~L~~L~l~~-n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~-----~L~~L~L  226 (305)
T d1xkua_         156 RIADTNIT-TIPQG--LPPSLTELHLDG-NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-----HLRELHL  226 (305)
T ss_dssp             ECCSSCCC-SCCSS--CCTTCSEEECTT-SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-----TCCEEEC
T ss_pred             ccccCCcc-ccCcc--cCCccCEEECCC-CcCCCCChhHhhccccccccccccccccccccccccccc-----cceeeec
Confidence            55555544 22221  134455555554 334444444444555555555554444444343333333     4444455


Q ss_pred             cCCcccccCccccCCCCCCCEEEccCCcccccccccc------cCCCCCCEEEccCCcc
Q 003200          345 RSSSIYGHLTDQLGQFRNLVTLNLANNSIVGLIPESF------GQLSTLRELQIYDNKL  397 (840)
Q Consensus       345 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l------~~l~~L~~L~L~~n~l  397 (840)
                      ++|+++. +|.++..+++|++|++++|+|+.+....|      ...++|+.|++++|++
T Consensus       227 ~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         227 NNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccccccc-cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            4444442 34455555555555555555554322222      2334455555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-23  Score=216.34  Aligned_cols=234  Identities=18%  Similarity=0.215  Sum_probs=155.1

Q ss_pred             CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEcc-CCcCcCCCCcccccCCCCcEEe
Q 003200          555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLR-KNRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      +++++|+|++|+++...+..|.++++|++|++++|++.+..+..+..+..++.+... .|.++...|..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            346667777777765555567777777777777777776666666666667666554 4455555566677777777777


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      +++|.+....+..+. ...+|+.+++++|++++..+..|..+++|+.|++++|++.+..+..+.++++|           
T Consensus       112 l~~n~~~~~~~~~~~-~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L-----------  179 (284)
T d1ozna_         112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (284)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             cCCcccccccccccc-hhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc-----------
Confidence            777776644444443 56677777777777776666677777777777777777776656666666655           


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCC
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFL  793 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  793 (840)
                              +.+++++|++++..|..|.++++|++|++++|++.+..|..|+.+++|++|++++|++.+.-+.. .-...+
T Consensus       180 --------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l  250 (284)
T d1ozna_         180 --------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL  250 (284)
T ss_dssp             --------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH
T ss_pred             --------chhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHH
Confidence                    77777777777777777777777777777777777777777777777777777777776433211 111234


Q ss_pred             CeEeccCCcccccCCC
Q 003200          794 NHLNLSNNNLTGKIPL  809 (840)
Q Consensus       794 ~~L~ls~N~l~g~ip~  809 (840)
                      +.+....+++....|.
T Consensus       251 ~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         251 QKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             HHCCSEECCCBEEESG
T ss_pred             HhCcCCCCceEeCCch
Confidence            4455555666655554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-23  Score=214.50  Aligned_cols=227  Identities=21%  Similarity=0.206  Sum_probs=199.7

Q ss_pred             EEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCC-CC
Q 003200          559 GLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVD-EN  637 (840)
Q Consensus       559 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls-~N  637 (840)
                      .++.++++++ .+|..+.  +++++|+|++|+|++..+..|.+++.|++|++++|++....+..+.++..++.++.. .|
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            4566777777 5566543  578999999999998777889999999999999999998888899999999999875 55


Q ss_pred             cccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccccccc
Q 003200          638 EFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREI  717 (840)
Q Consensus       638 ~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  717 (840)
                      .+....|..+. .+++|++|++++|.+....+..+...++|+.+++++|++++..+..+..++++               
T Consensus        92 ~~~~l~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L---------------  155 (284)
T d1ozna_          92 QLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL---------------  155 (284)
T ss_dssp             TCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred             ccccccchhhc-ccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch---------------
Confidence            55544455555 89999999999999998888889999999999999999996666778777776               


Q ss_pred             CCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEe
Q 003200          718 LPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLN  797 (840)
Q Consensus       718 ~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  797 (840)
                          +.|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++||+++|++.+..|..+..+++|++|+
T Consensus       156 ----~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~  231 (284)
T d1ozna_         156 ----THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (284)
T ss_dssp             ----CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             ----hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEE
Confidence                8999999999988889999999999999999999999999999999999999999999988888999999999999


Q ss_pred             ccCCcccccCC
Q 003200          798 LSNNNLTGKIP  808 (840)
Q Consensus       798 ls~N~l~g~ip  808 (840)
                      +++|++.+.-+
T Consensus       232 l~~N~l~C~C~  242 (284)
T d1ozna_         232 LNDNPWVCDCR  242 (284)
T ss_dssp             CCSSCEECSGG
T ss_pred             ecCCCCCCCcc
Confidence            99999987544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.3e-22  Score=201.85  Aligned_cols=198  Identities=20%  Similarity=0.191  Sum_probs=101.4

Q ss_pred             CcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeC
Q 003200          555 KSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDV  634 (840)
Q Consensus       555 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  634 (840)
                      ..+.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++. +| .+..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            44555666666666 3454442  356666666666665555556666666666666666652 22 2345566666666


Q ss_pred             CCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccc
Q 003200          635 DENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVY  714 (840)
Q Consensus       635 s~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~  714 (840)
                      ++|++++ .+..+. .+++|+.|++++|.+.+..+..+..+.+++.|++++|.+.+..+..+..++.+            
T Consensus        85 s~N~l~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l------------  150 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------  150 (266)
T ss_dssp             CSSCCSS-CCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred             ccccccc-cccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccccc------------
Confidence            6666552 233332 45555555555555554444444455555555555555543333333333333            


Q ss_pred             cccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcc
Q 003200          715 REILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQL  779 (840)
Q Consensus       715 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  779 (840)
                             +.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|++
T Consensus       151 -------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         151 -------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             -------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             -------hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence                   44455555444444444444444444444444444 4444444444444444444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.9e-22  Score=199.46  Aligned_cols=201  Identities=20%  Similarity=0.213  Sum_probs=155.1

Q ss_pred             CCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccE
Q 003200          577 SYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLV  656 (840)
Q Consensus       577 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~  656 (840)
                      ....+.+++.+++.++ .+|..+.  +++++|+|++|+|++..+..|.++++|++|++++|+++ .+|.. . .+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc-c-ccccccc
Confidence            4456677788888888 4566554  57888888888888666677888888888888888887 44432 2 5788888


Q ss_pred             EEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCc
Q 003200          657 LILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEIL  736 (840)
Q Consensus       657 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  736 (840)
                      |++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.++                   +.|++++|.+++..+
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l-------------------~~L~l~~n~l~~l~~  141 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------QELYLKGNELKTLPP  141 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-------------------CEEECTTSCCCCCCT
T ss_pred             cccccccccc-cccccccccccccccccccccceeecccccccccc-------------------ccccccccccceecc
Confidence            8888888874 35677788888888888888876556566665555                   788888888886666


Q ss_pred             ccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 003200          737 SEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT  804 (840)
Q Consensus       737 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  804 (840)
                      ..+..++.|+.|++++|++++..+..|+.+++|++|||++|+++ .+|+++..+++|+.|++++|++.
T Consensus       142 ~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            77777888888888888888777777888888888888888888 78888888888888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.4e-22  Score=219.35  Aligned_cols=62  Identities=19%  Similarity=0.262  Sum_probs=38.0

Q ss_pred             CCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccC----CCCCCCCCCCCCCeEeccCcccc
Q 003200          107 HLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVG----MIPPQLGNLSDLQFLDLSSNYLY  168 (840)
Q Consensus       107 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~----~~p~~l~~l~~L~~L~Ls~n~~~  168 (840)
                      +|++||++++++++..+...+..++++|+|+|++|.++.    .++..+..+++|++|||++|.++
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            466777777777654445555666777777777776652    22334455666666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.1e-20  Score=203.27  Aligned_cols=86  Identities=15%  Similarity=0.144  Sum_probs=46.5

Q ss_pred             cceEEeCCCCccccc----Cccccc-CCCCCCeEeCCCCccccc----CCcchhccCCCCeEeCCCCcccccCCccc---
Q 003200          720 LVSLLDISRNNFSGE----ILSEVT-NLKALQSINFSFNTFTGR----IPESIGTMRALESVDFSVNQLSGEIPQSM---  787 (840)
Q Consensus       720 ~L~~L~Ls~N~l~~~----~~~~l~-~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---  787 (840)
                      +|++|||++|++++.    +++.+. ..+.|++|+|++|.++..    +++.+..+++|++|||++|+++......+   
T Consensus       341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~  420 (460)
T d1z7xw1         341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES  420 (460)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred             chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHH
Confidence            346666666666532    222232 345566666666666532    33445555667777777776654322222   


Q ss_pred             -c-CCCCCCeEeccCCcccc
Q 003200          788 -S-SLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       788 -~-~l~~L~~L~ls~N~l~g  805 (840)
                       . .-+.|+.|++++|.+..
T Consensus       421 l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         421 VRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HTSTTCCCCEEECTTCCCCH
T ss_pred             HHhCCCccCEEECCCCCCCH
Confidence             1 22356677777666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=1.6e-16  Score=168.24  Aligned_cols=304  Identities=23%  Similarity=0.270  Sum_probs=191.3

Q ss_pred             CCCcEEEccCCCCCCCcchHHHhccCCccEEEccCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCC
Q 003200          458 KHLQYLNLLNSRISDIFPIRFLKSASQLKFLDVGLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNN  537 (840)
Q Consensus       458 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  537 (840)
                      .++++|++++++++.++.     .+++|++|++++|+++.. |..  ..+|+.|++.+|.++. ++..++.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~-----~~~~L~~L~Ls~N~l~~l-p~~--~~~L~~L~l~~n~l~~-l~~lp~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE-----LPPHLESLVASCNSLTEL-PEL--PQSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS-----CCTTCSEEECCSSCCSSC-CCC--CTTCCEEECCSSCCSC-CCSCCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCC-----CCCCCCEEECCCCCCccc-ccc--hhhhhhhhhhhcccch-hhhhcccccccccccc
Confidence            468889999998886542     256788888888888744 332  3577888888877763 3445567788888887


Q ss_pred             cCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcC
Q 003200          538 SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSG  617 (840)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  617 (840)
                      .+... |.     +..+++|+.|+++++.+.... .   ....+..+.+.++....  ...+..++.++.+++++|....
T Consensus       109 ~l~~l-p~-----~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         109 QLEKL-PE-----LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSC-CC-----CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccc-cc-----hhhhccceeeccccccccccc-c---ccccccchhhccccccc--cccccccccceecccccccccc
Confidence            77643 22     234677778888777776332 2   23456667776665542  2346667777888888777653


Q ss_pred             CCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCcccc
Q 003200          618 KIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCIS  697 (840)
Q Consensus       618 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  697 (840)
                       .+..   ....+.+..+++.+. .+|.. . .++.|+.+++++|.... .|..   ..++..+++.++.+. ..+....
T Consensus       177 -~~~~---~~~~~~l~~~~~~~~-~~~~~-~-~l~~L~~l~l~~n~~~~-~~~~---~~~l~~~~~~~~~~~-~~~~~~~  244 (353)
T d1jl5a_         177 -LPDL---PLSLESIVAGNNILE-ELPEL-Q-NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT-DLPELPQ  244 (353)
T ss_dssp             -CCCC---CTTCCEEECCSSCCS-SCCCC-T-TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS-CCCCCCT
T ss_pred             -cccc---ccccccccccccccc-ccccc-c-ccccccccccccccccc-cccc---ccccccccccccccc-ccccccc
Confidence             2221   233455666655554 44432 2 57788888888877653 3322   355677777777766 3333332


Q ss_pred             ccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCC
Q 003200          698 NLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVN  777 (840)
Q Consensus       698 ~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  777 (840)
                      .++.....  .................++..+.+.+.    ...+++|++|+|++|+++ .+|..   +++|+.|++++|
T Consensus       245 ~l~~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N  314 (353)
T d1jl5a_         245 SLTFLDVS--ENIFSGLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFN  314 (353)
T ss_dssp             TCCEEECC--SSCCSEESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             cccccccc--cccccccccccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCC
Confidence            22211000  000111112233446677777776632    234678999999999998 67764   578999999999


Q ss_pred             cccccCCccccCCCCCCeEeccCCcccccCCC
Q 003200          778 QLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPL  809 (840)
Q Consensus       778 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  809 (840)
                      +++ .+|+.   +++|++|++++|+++ .+|.
T Consensus       315 ~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         315 HLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             cCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            998 67764   467999999999987 5665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=2.9e-16  Score=166.10  Aligned_cols=313  Identities=21%  Similarity=0.251  Sum_probs=159.0

Q ss_pred             CCCEEEccCcccceeccCCCCCccCccEEecccccCCCCCCccccCCCCCcEEEccCCCCCCCcchHHHhccCCccEEEc
Q 003200          411 KLSWFRVGGNQLTFEVKHDWIPPFQLVALGLHNCYVGSRFPQWLHSQKHLQYLNLLNSRISDIFPIRFLKSASQLKFLDV  490 (840)
Q Consensus       411 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l  490 (840)
                      +++.|+++++.++... .   .+++|++|++++|.++ .+|..   ..+|++|++++|+++.+..     ..+.|++|++
T Consensus        39 ~l~~LdLs~~~L~~lp-~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~-----lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSSLP-E---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSD-----LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSCCC-S---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCS-----CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCCCCC-C---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhh-----hccccccccc
Confidence            5777778777776322 1   2345666666666665 23432   3456666666666654421     1234666666


Q ss_pred             cCcccccccccccCCCcccEEEcccCcCCCCCCCCCCCCcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccc
Q 003200          491 GLNQFHGKISNLTKNTQLLFLSVNSNNMSGPLPLVSSNLVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE  570 (840)
Q Consensus       491 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  570 (840)
                      ++|.+... +.....+.|+.++++++.+.... .....                            +..+.+..+.... 
T Consensus       106 ~~n~l~~l-p~~~~l~~L~~L~l~~~~~~~~~-~~~~~----------------------------l~~l~~~~~~~~~-  154 (353)
T d1jl5a_         106 SNNQLEKL-PELQNSSFLKIIDVDNNSLKKLP-DLPPS----------------------------LEFIAAGNNQLEE-  154 (353)
T ss_dssp             CSSCCSSC-CCCTTCTTCCEEECCSSCCSCCC-CCCTT----------------------------CCEEECCSSCCSS-
T ss_pred             cccccccc-cchhhhccceeeccccccccccc-ccccc----------------------------ccchhhccccccc-
Confidence            66665532 33334455555555555444322 22233                            4444444433321 


Q ss_pred             cCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhc
Q 003200          571 IPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGER  650 (840)
Q Consensus       571 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  650 (840)
                       +..+..++.++.+++++|..... +..   ....+.+...++.+. .++ .+..++.|+.+++++|... .+|.    .
T Consensus       155 -~~~l~~l~~l~~L~l~~n~~~~~-~~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~----~  222 (353)
T d1jl5a_         155 -LPELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----L  222 (353)
T ss_dssp             -CCCCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----C
T ss_pred             -cccccccccceeccccccccccc-ccc---ccccccccccccccc-ccc-ccccccccccccccccccc-cccc----c
Confidence             22344455555555555554422 111   122334444443333 222 2344555555555555443 2222    2


Q ss_pred             cCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccC-cccccccCCcceEEeCCCC
Q 003200          651 FSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTG-SVVYREILPLVSLLDISRN  729 (840)
Q Consensus       651 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~-~~~~~~~~~~L~~L~Ls~N  729 (840)
                      ..++..+.+..+.+... +.   ....+...++..+.+.+. +.......   ......+ .......+++|++|+|++|
T Consensus       223 ~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~l-~~l~~~~~---~~~~~~~~~~~~~~~~~~L~~L~Ls~N  294 (353)
T d1jl5a_         223 PPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGL-SELPPNLY---YLNASSNEIRSLCDLPPSLEELNVSNN  294 (353)
T ss_dssp             CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEE-SCCCTTCC---EEECCSSCCSEECCCCTTCCEEECCSS
T ss_pred             ccccccccccccccccc-cc---cccccccccccccccccc-ccccchhc---ccccccCccccccccCCCCCEEECCCC
Confidence            33455555555554422 11   122334444444333211 00000000   0000000 1111233577899999999


Q ss_pred             cccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEecc
Q 003200          730 NFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLS  799 (840)
Q Consensus       730 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  799 (840)
                      +++ .+|..   +++|+.|+|++|+++ .+|+.   +++|++|++++|+++ .+|...   ..|+.|.+.
T Consensus       295 ~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         295 KLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             CCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEECC
T ss_pred             ccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeECc
Confidence            998 56754   578999999999999 67764   568999999999998 677644   356666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.2e-17  Score=164.30  Aligned_cols=203  Identities=20%  Similarity=0.308  Sum_probs=124.4

Q ss_pred             EeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcc
Q 003200          560 LKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEF  639 (840)
Q Consensus       560 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l  639 (840)
                      ++++.+++++..  .+..+.+|++|++.+|.++..  +.+..+++|++|++++|++++..|  +..+++|+.+++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            344444444332  233445556666666655532  235555666666666665553322  55556666666666655


Q ss_pred             cccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCC
Q 003200          640 VGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILP  719 (840)
Q Consensus       640 ~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~  719 (840)
                      + .++. +. .+++|+.++++++...+.  ..+...+.++.++++++.+....  .+...+++                 
T Consensus        98 ~-~i~~-l~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L-----------------  153 (227)
T d1h6ua2          98 K-NVSA-IA-GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNL-----------------  153 (227)
T ss_dssp             S-CCGG-GT-TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTC-----------------
T ss_pred             c-cccc-cc-cccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhcccccc-----------------
Confidence            4 2332 32 456666666666655433  23445666777777777665322  23333333                 


Q ss_pred             cceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEecc
Q 003200          720 LVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLS  799 (840)
Q Consensus       720 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  799 (840)
                        +.|++++|.+++.  ..++++++|+.|++++|++++ +|. ++++++|++|++++|++++ +| .++++++|++|+++
T Consensus       154 --~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         154 --QYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             --CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEE
T ss_pred             --ccccccccccccc--hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEee
Confidence              7888888887643  347788888888888888884 443 7888889999999998884 44 37888889988886


Q ss_pred             C
Q 003200          800 N  800 (840)
Q Consensus       800 ~  800 (840)
                      +
T Consensus       226 n  226 (227)
T d1h6ua2         226 N  226 (227)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.2e-17  Score=162.41  Aligned_cols=203  Identities=19%  Similarity=0.282  Sum_probs=157.1

Q ss_pred             EEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEcc
Q 003200          532 LDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLR  611 (840)
Q Consensus       532 L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  611 (840)
                      ++++.+++++...      ...+.+|+.|++.+|.++..  +.+..+++|++|++++|++++..|  +..+++|++++++
T Consensus        24 ~~l~~~~~~d~~~------~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          24 IAAGKSNVTDTVT------QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHTTCSSTTSEEC------HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred             HHhCCCCcCCcCC------HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccc
Confidence            4455555554432      12357899999999998853  458889999999999999986543  8888999999999


Q ss_pred             CCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeeccccccccc
Q 003200          612 KNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGA  691 (840)
Q Consensus       612 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  691 (840)
                      +|.++. + ..+..+++|+.+++++|...+..+  +. ..+.++.+.++++.+....  .+...++|+.|++++|.+.+.
T Consensus        94 ~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2          94 GNPLKN-V-SAIAGLQSIKTLDLTSTQITDVTP--LA-GLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             SCCCSC-C-GGGTTCTTCCEEECTTSCCCCCGG--GT-TCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred             cccccc-c-ccccccccccccccccccccccch--hc-cccchhhhhchhhhhchhh--hhccccccccccccccccccc
Confidence            998873 3 357889999999999998874433  22 5788899999998887543  467788999999999988733


Q ss_pred             CCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCe
Q 003200          692 IPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALES  771 (840)
Q Consensus       692 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  771 (840)
                      .  .+.++++|                   +.|++++|++++ ++ .++++++|++|+|++|++++ +|. ++++++|++
T Consensus       167 ~--~l~~l~~L-------------------~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~  221 (227)
T d1h6ua2         167 T--PLANLSKL-------------------TTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFI  221 (227)
T ss_dssp             G--GGTTCTTC-------------------CEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCE
T ss_pred             h--hhcccccc-------------------eecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCE
Confidence            2  25555555                   999999999985 33 48899999999999999995 543 889999999


Q ss_pred             EeCCC
Q 003200          772 VDFSV  776 (840)
Q Consensus       772 L~Ls~  776 (840)
                      |++++
T Consensus       222 L~lsn  226 (227)
T d1h6ua2         222 VTLTN  226 (227)
T ss_dssp             EEEEE
T ss_pred             EEeeC
Confidence            99974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.9e-17  Score=164.91  Aligned_cols=202  Identities=13%  Similarity=0.071  Sum_probs=95.9

Q ss_pred             cccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCCC-CcccCCCCcccEEEccC-CcCcCCCCcccccCCCCcEEe
Q 003200          556 SLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNL-PNSLGSITSLVWLYLRK-NRLSGKIPISLKNCTALASLD  633 (840)
Q Consensus       556 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  633 (840)
                      ++++|++++|.++...+.+|.++++|++|++++|.+.+.+ +..|..++.++++.+.. |.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            3444455555444333334445555555555555444322 22344444555544432 334434444444445555555


Q ss_pred             CCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCccc
Q 003200          634 VDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVV  713 (840)
Q Consensus       634 ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~  713 (840)
                      +++|.+....+...                        +..++.+..+..+++.+....+..+..+.             
T Consensus       110 l~~~~l~~~~~~~~------------------------~~~l~~l~~~~~~n~~l~~i~~~~~~~~~-------------  152 (242)
T d1xwdc1         110 ISNTGIKHLPDVHK------------------------IHSLQKVLLDIQDNINIHTIERNSFVGLS-------------  152 (242)
T ss_dssp             EESCCCCSCCCCTT------------------------TCBSSCEEEEEESCTTCCEECTTSSTTSB-------------
T ss_pred             cchhhhcccccccc------------------------ccccccccccccccccccccccccccccc-------------
Confidence            54444432212111                        22233334444444444422233333222             


Q ss_pred             ccccCCcceEEeCCCCcccccCcccccCCCCCCeE-eCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCC
Q 003200          714 YREILPLVSLLDISRNNFSGEILSEVTNLKALQSI-NFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTF  792 (840)
Q Consensus       714 ~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  792 (840)
                           ..++.|++++|+++.. +....+.++++.+ ++++|+++...+..|.++++|++||+++|+++...+..+.+++.
T Consensus       153 -----~~l~~L~l~~n~l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  226 (242)
T d1xwdc1         153 -----FESVILWLNKNGIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  226 (242)
T ss_dssp             -----SSCEEEECCSSCCCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             -----ccceeeeccccccccc-ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcc
Confidence                 1225666666666633 3333334444433 45666666433445677777777777777777433445666666


Q ss_pred             CCeEeccC
Q 003200          793 LNHLNLSN  800 (840)
Q Consensus       793 L~~L~ls~  800 (840)
                      |+++++.+
T Consensus       227 L~~l~~~~  234 (242)
T d1xwdc1         227 LRARSTYN  234 (242)
T ss_dssp             EESSSEES
T ss_pred             cccCcCCC
Confidence            66655543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.1e-17  Score=163.41  Aligned_cols=213  Identities=14%  Similarity=0.092  Sum_probs=134.6

Q ss_pred             CEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEcc-
Q 003200          582 KVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILR-  660 (840)
Q Consensus       582 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~-  660 (840)
                      +.++.++..++ .+|+.+.  +++++|++++|+++...+..|.++++|++|++++|.+...++...+..+++++++.+. 
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34444444444 3333332  3455555555555533334555566666666666655544444333356666666654 


Q ss_pred             CCcccccCCccccCccccceeecccccccccCCc-cccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccc
Q 003200          661 SNQFHGPLPKTICDLAFLQILDLADNNLSGAIPK-CISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEV  739 (840)
Q Consensus       661 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l  739 (840)
                      .|.+....+..+.++++|+.+++++|++....+. .+..++                   .+..+..+++.+....+..+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~-------------------~l~~~~~~n~~l~~i~~~~~  148 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-------------------KVLLDIQDNINIHTIERNSF  148 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSS-------------------CEEEEEESCTTCCEECTTSS
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccc-------------------cccccccccccccccccccc
Confidence            3566666777788889999999999988733222 122222                   23667778888876666677


Q ss_pred             cCCC-CCCeEeCCCCcccccCCcchhccCCCCeE-eCCCCcccccCCccccCCCCCCeEeccCCcccccCCCCCcCCCcC
Q 003200          740 TNLK-ALQSINFSFNTFTGRIPESIGTMRALESV-DFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIPLSTQLQSFN  817 (840)
Q Consensus       740 ~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~  817 (840)
                      ..++ .++.|++++|+++...+.. ...++++++ ++++|+++...+..|..+++|++|++++|+++ .+|.. .|+.+.
T Consensus       149 ~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~-~~~~l~  225 (242)
T d1xwdc1         149 VGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY-GLENLK  225 (242)
T ss_dssp             TTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSS-SCTTCC
T ss_pred             ccccccceeeeccccccccccccc-ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHH-HHcCCc
Confidence            6664 7899999999999554444 455665555 57888898444456899999999999999998 56653 355544


Q ss_pred             cC
Q 003200          818 AS  819 (840)
Q Consensus       818 ~~  819 (840)
                      ..
T Consensus       226 ~L  227 (242)
T d1xwdc1         226 KL  227 (242)
T ss_dssp             EE
T ss_pred             cc
Confidence            33

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=5.2e-17  Score=157.19  Aligned_cols=180  Identities=20%  Similarity=0.324  Sum_probs=107.4

Q ss_pred             eccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCccc
Q 003200          561 KLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENEFV  640 (840)
Q Consensus       561 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  640 (840)
                      ++.++.+++.++.  ..+.+|++|++++|.++...  .+..+++|++|++++|++++..  .+..+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            4455555544332  23445666666666665321  2455556666666666555322  2344555555555555544


Q ss_pred             ccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCc
Q 003200          641 GNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPL  720 (840)
Q Consensus       641 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~  720 (840)
                                               +. | .+..+++|+.|++++|.+. .++ .+..++.+                  
T Consensus       104 -------------------------~l-~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l------------------  136 (210)
T d1h6ta2         104 -------------------------DL-S-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQL------------------  136 (210)
T ss_dssp             -------------------------CG-G-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTC------------------
T ss_pred             -------------------------cc-c-ccccccccccccccccccc-ccc-cccccccc------------------
Confidence                                     21 2 3455666666666666654 221 23333333                  


Q ss_pred             ceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccC
Q 003200          721 VSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSN  800 (840)
Q Consensus       721 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  800 (840)
                       +.+++++|.+++  +..+..+++|+.+++++|++++ ++. +.++++|++|++++|+++ .+| .++.+++|++|+|++
T Consensus       137 -~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         137 -ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             -cccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence             677777777764  3356677888888888888874 433 778888888888888887 455 578888888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=3e-17  Score=156.51  Aligned_cols=87  Identities=24%  Similarity=0.373  Sum_probs=39.1

Q ss_pred             cCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCc
Q 003200          651 FSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN  730 (840)
Q Consensus       651 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~  730 (840)
                      +++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..|.++++|                   ++|+|++|+
T Consensus        53 l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L-------------------~~L~L~~N~  113 (192)
T d1w8aa_          53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL-------------------KTLNLYDNQ  113 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC-------------------CEEECCSSC
T ss_pred             CceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcc-------------------cccccCCcc
Confidence            3444444444444444444444444444444444444443333344443333                   444444444


Q ss_pred             ccccCcccccCCCCCCeEeCCCCccc
Q 003200          731 FSGEILSEVTNLKALQSINFSFNTFT  756 (840)
Q Consensus       731 l~~~~~~~l~~l~~L~~L~Ls~N~l~  756 (840)
                      |++..+..|..+++|++|+|++|.+.
T Consensus       114 l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         114 ISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCHHHhcCCcccccccccccccc
Confidence            44444444444455555555555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.1e-16  Score=148.74  Aligned_cols=163  Identities=26%  Similarity=0.357  Sum_probs=102.1

Q ss_pred             cCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCC
Q 003200          103 LDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLE  182 (840)
Q Consensus       103 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~  182 (840)
                      .++.++++|++++|.++.  + +.+..+++|++|++++|++++..|  ++++++|++|++++|.+....  .+.++++|+
T Consensus        37 ~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             HHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccc
Confidence            346677777777777764  3 246677777777777777765432  777777777777777665433  466777777


Q ss_pred             EEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCc
Q 003200          183 HLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLE  262 (840)
Q Consensus       183 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  262 (840)
                      +|+++++......    .+..+++|+.|++++|.+...        ..+..+++|++|++++|++++. + .++++++|+
T Consensus       110 ~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--------~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~  175 (199)
T d2omxa2         110 GLTLFNNQITDID----PLKNLTNLNRLELSSNTISDI--------SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLE  175 (199)
T ss_dssp             EEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCC--------GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCC
T ss_pred             ccccccccccccc----ccchhhhhHHhhhhhhhhccc--------ccccccccccccccccccccCC-c-cccCCCCCC
Confidence            7777777665542    244566666666666665543        3355666666666666666543 2 356666666


Q ss_pred             EEEcccCccccccchhhhcCCCCcEE
Q 003200          263 CLNLRNNSLQGTISDAIGNLTSVSWL  288 (840)
Q Consensus       263 ~L~L~~n~l~~~~~~~l~~l~~L~~L  288 (840)
                      +|++++|++++ ++ .++.+++|++|
T Consensus       176 ~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         176 RLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             EEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            66666666653 22 35555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.1e-16  Score=151.66  Aligned_cols=166  Identities=25%  Similarity=0.312  Sum_probs=111.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCE
Q 003200          104 DLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEH  183 (840)
Q Consensus       104 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~  183 (840)
                      ++..|++|++++|.++..  + .+..+++|++|++++|++++. + .++.+++|++|++++|+++..  ..+.++++|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred             HhcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccc--ccccccccccc
Confidence            456777888888877743  2 366777888888888877753 2 367777888888887776643  35677777777


Q ss_pred             EEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCCCcccccCCCCCcE
Q 003200          184 LDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSSIPDWLYKFSPLEC  263 (840)
Q Consensus       184 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  263 (840)
                      |++++|.+...+    .+..+++++.+++++|.+++.        ..+..+++|+++++++|++++. + .++++++|++
T Consensus       117 L~l~~~~~~~~~----~l~~l~~l~~l~~~~n~l~~~--------~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~  182 (210)
T d1h6ta2         117 LSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQN  182 (210)
T ss_dssp             EECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred             cccccccccccc----ccccccccccccccccccccc--------cccccccccccccccccccccc-c-cccCCCCCCE
Confidence            777777766543    345566777777777766554        3356667777777777777643 2 2667777777


Q ss_pred             EEcccCccccccchhhhcCCCCcEEeccc
Q 003200          264 LNLRNNSLQGTISDAIGNLTSVSWLDLSI  292 (840)
Q Consensus       264 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  292 (840)
                      |++++|.++. ++ .+..+++|++|+|++
T Consensus       183 L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         183 LYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             EECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            7777777663 33 466677777776653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.1e-16  Score=150.33  Aligned_cols=178  Identities=26%  Similarity=0.402  Sum_probs=99.9

Q ss_pred             EEeccCCcCccccCccccCCCCcCEEEccCCcCCCCCCcccCCCCcccEEEccCCcCcCCCCcccccCCCCcEEeCCCCc
Q 003200          559 GLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGNLPNSLGSITSLVWLYLRKNRLSGKIPISLKNCTALASLDVDENE  638 (840)
Q Consensus       559 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~  638 (840)
                      ...++.+.+++.++  ...+.++++|++++|.++..  +.++.+++|++|++++|++++..|  +.++++|++|++++|.
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccc
Confidence            34566666665433  23456777777777777643  236666777777777777664322  6666666666666666


Q ss_pred             ccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccC
Q 003200          639 FVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREIL  718 (840)
Q Consensus       639 l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~  718 (840)
                      +. .++                          .+.+++.|+.|++++|.....  ..+..+++|                
T Consensus        96 ~~-~~~--------------------------~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L----------------  130 (199)
T d2omxa2          96 IA-DIT--------------------------PLANLTNLTGLTLFNNQITDI--DPLKNLTNL----------------  130 (199)
T ss_dssp             CC-CCG--------------------------GGTTCTTCSEEECCSSCCCCC--GGGTTCTTC----------------
T ss_pred             cc-ccc--------------------------ccccccccccccccccccccc--cccchhhhh----------------
Confidence            54 222                          133444555555555544321  112222222                


Q ss_pred             CcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeE
Q 003200          719 PLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHL  796 (840)
Q Consensus       719 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  796 (840)
                         +.|++++|++.. + +.+..+++|+.|++++|++++ ++ .++++++|++|++++|++++ +| .++++++|++|
T Consensus       131 ---~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         131 ---NRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ---SEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ---HHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence               556666665542 2 245566666666666666663 32 26666677777777776663 33 35666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.1e-16  Score=152.42  Aligned_cols=157  Identities=18%  Similarity=0.232  Sum_probs=125.1

Q ss_pred             cEEeCCCCcccccCChhhhhccCCccEEEccCCccccc-CCccccCccccceeecccccccccCCccccccccCcccccc
Q 003200          630 ASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGP-LPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSF  708 (840)
Q Consensus       630 ~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  708 (840)
                      ++++.+++.++ .+|..+.   +++++|+|++|+|++. .+..|.++++|+.|++++|++.+..+..+..+++|      
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L------   80 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc------
Confidence            46777777776 6676542   5788888888888764 45677889999999999999998888888887777      


Q ss_pred             cCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcccc
Q 003200          709 TGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMS  788 (840)
Q Consensus       709 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  788 (840)
                                   +.|+|++|++++..|..|.++++|++|+|++|+|++..|+.|..+++|++|+|++|++....+.. .
T Consensus        81 -------------~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~  146 (192)
T d1w8aa_          81 -------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-W  146 (192)
T ss_dssp             -------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-H
T ss_pred             -------------ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-H
Confidence                         89999999999888888999999999999999999888889999999999999999997543221 1


Q ss_pred             CCCCCCeEeccCCcccccCCCC
Q 003200          789 SLTFLNHLNLSNNNLTGKIPLS  810 (840)
Q Consensus       789 ~l~~L~~L~ls~N~l~g~ip~~  810 (840)
                      -...++.+.+..|.+....|..
T Consensus       147 ~~~~l~~~~l~~~~~~c~~p~~  168 (192)
T d1w8aa_         147 FAEWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             HHHHHHHHCCSGGGCBBCSSTT
T ss_pred             HhhhhhhhcccCCCeEeCCChh
Confidence            1234566677788888777753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.8e-16  Score=158.74  Aligned_cols=183  Identities=20%  Similarity=0.177  Sum_probs=95.8

Q ss_pred             CCCCcEEeccCCcccCC-CCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccCcC-CCCCcchhhhcCCCCCC
Q 003200          130 MRNLRYLNLSDTQFVGM-IPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRSVN-LSKASDWLMATNTLPSL  207 (840)
Q Consensus       130 l~~L~~L~Ls~n~i~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~l~~L  207 (840)
                      ..+|++||+++|.+++. ++..+.++++|++|++++|.+.......+.++++|++|+++++. +++ .........+++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd-~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc-cccchhhHHHHhc
Confidence            45666666666665432 23334566666666666666555555556666666666666642 322 1122223445666


Q ss_pred             CEEEcCCCC-CCcCCCCCCCCCCccc-CCCCCCEEECcCCC--CCCC-CcccccCCCCCcEEEcccCc-cccccchhhhc
Q 003200          208 LELRLSNCS-LHHFPTLASPIPRGLQ-NLTSLKHLDLDSNH--FNSS-IPDWLYKFSPLECLNLRNNS-LQGTISDAIGN  281 (840)
Q Consensus       208 ~~L~L~~n~-l~~~~~~~~~l~~~l~-~l~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~  281 (840)
                      ++|++++|. +++...     ...+. .+++|++|+++++.  ++.. +.....++++|++|++++|. +++.....+..
T Consensus       124 ~~L~ls~c~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         124 DELNLSWCFDFTEKHV-----QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             CEEECCCCTTCCHHHH-----HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             cccccccccccccccc-----hhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc
Confidence            666666653 221100     01111 23456666666542  2211 12223345666666666543 45455555666


Q ss_pred             CCCCcEEecccccCccccCcccccCCCCCcEEEcCCC
Q 003200          282 LTSVSWLDLSINIGLQGRIPRSMANFCNLKSVNLRGV  318 (840)
Q Consensus       282 l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~  318 (840)
                      +++|++|++++|..+++.....++++++|+.|+++++
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6666666666655555555555666666666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-15  Score=154.77  Aligned_cols=251  Identities=17%  Similarity=0.189  Sum_probs=164.3

Q ss_pred             cEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccccCccccCCCCcCEEEccCCcCCCC-CCcccCCCCcccEE
Q 003200          530 VYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEIPDCWMSYQNLKVLKLSNNKFSGN-LPNSLGSITSLVWL  608 (840)
Q Consensus       530 ~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L  608 (840)
                      +++|++++.+.......+..     .....+.++...+...... .....+|++||++++.+++. ++..+..+++|++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-----~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-----QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-----TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHHHHHHh-----ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence            46777777665332222211     2345666666555433222 33456789999998887753 33456788899999


Q ss_pred             EccCCcCcCCCCcccccCCCCcEEeCCCC-cccccCChhhhhccCCccEEEccCCc-cccc-CCcccc-Cccccceeecc
Q 003200          609 YLRKNRLSGKIPISLKNCTALASLDVDEN-EFVGNIPTWFGERFSRMLVLILRSNQ-FHGP-LPKTIC-DLAFLQILDLA  684 (840)
Q Consensus       609 ~L~~n~l~~~~p~~l~~l~~L~~L~ls~N-~l~~~~p~~~~~~l~~L~~L~l~~n~-l~~~-~p~~l~-~l~~L~~L~Ls  684 (840)
                      ++++|.+++..+..+..+++|++|++++| .++...-..+...+++|++|+++++. ++.. ++..+. ..+.|+.|+++
T Consensus        77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2          77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence            99999888777788888899999999886 44432223344568899999998863 4321 112222 34689999998


Q ss_pred             ccc--cccc-CCccccccccCcccccccCcccccccCCcceEEeCCCC-cccccCcccccCCCCCCeEeCCCC-cccccC
Q 003200          685 DNN--LSGA-IPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRN-NFSGEILSEVTNLKALQSINFSFN-TFTGRI  759 (840)
Q Consensus       685 ~N~--l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~  759 (840)
                      ++.  ++.. +.....                   .+|+|+.|++++| .+++..+..+.++++|++|++++| .+++..
T Consensus       157 ~~~~~i~~~~l~~l~~-------------------~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         157 GYRKNLQKSDLSTLVR-------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             SCGGGSCHHHHHHHHH-------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             cccccccccccccccc-------------------ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence            753  3311 111112                   2455699999986 578788888999999999999995 687777


Q ss_pred             CcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCcccccCC
Q 003200          760 PESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLTGKIP  808 (840)
Q Consensus       760 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  808 (840)
                      ...++++++|++|+++++--.+.++.-...+++   |.+..+++++..|
T Consensus       218 l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~---L~i~~~~ls~~~~  263 (284)
T d2astb2         218 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIAR  263 (284)
T ss_dssp             GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTT---SEESCCCSCCTTC
T ss_pred             HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcc---ccccCccCCCCCC
Confidence            778899999999999988322223222233444   4567778876543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=1.9e-15  Score=158.77  Aligned_cols=136  Identities=13%  Similarity=0.237  Sum_probs=80.2

Q ss_pred             cCCccEEEccCCccccc----CCccccCccccceeeccccccccc-----CCccccccccCcccccccCcccccccCCcc
Q 003200          651 FSRMLVLILRSNQFHGP----LPKTICDLAFLQILDLADNNLSGA-----IPKCISNLTGMVTVKSFTGSVVYREILPLV  721 (840)
Q Consensus       651 l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L  721 (840)
                      .+.|+.+.+++|++...    +...+...+.|+.|++++|.+...     +...+...                   +.|
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~-------------------~~L  217 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-------------------QEL  217 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-------------------TTC
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcch-------------------hhh
Confidence            44566666666655422    122334456677777777766521     11222222                   334


Q ss_pred             eEEeCCCCccccc----CcccccCCCCCCeEeCCCCcccccCCcch----hc--cCCCCeEeCCCCccccc----CCccc
Q 003200          722 SLLDISRNNFSGE----ILSEVTNLKALQSINFSFNTFTGRIPESI----GT--MRALESVDFSVNQLSGE----IPQSM  787 (840)
Q Consensus       722 ~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~--l~~L~~L~Ls~N~l~~~----~p~~l  787 (840)
                      +.|++++|.++..    +...+..++.|++|+|++|.+++.....+    ..  .+.|++||+++|+++..    +...+
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l  297 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  297 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHH
Confidence            7777877777533    34455677788888888888775433333    22  35688888888887642    23333


Q ss_pred             c-CCCCCCeEeccCCcccc
Q 003200          788 S-SLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       788 ~-~l~~L~~L~ls~N~l~g  805 (840)
                      . +.+.|++|++++|++..
T Consensus       298 ~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         298 DEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHCTTCCEEECTTSBSCT
T ss_pred             HccCCCCCEEECCCCcCCC
Confidence            2 46778888888887754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-14  Score=132.10  Aligned_cols=116  Identities=17%  Similarity=0.116  Sum_probs=89.5

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCC
Q 003200          100 PALLDLKHLSYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLS  179 (840)
Q Consensus       100 ~~~~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~  179 (840)
                      +.+.+...+|+|||++|.|+  .++..+..+++|++|+|++|+++.. + .|..+++|++|++++|.+.......+..++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhccCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCcccccccc
Confidence            34667788999999999998  4566667789999999999998844 3 588899999999999998887777778888


Q ss_pred             CCCEEEccCcCCCCCcchhhhcCCCCCCCEEEcCCCCCCcC
Q 003200          180 FLEHLDLRSVNLSKASDWLMATNTLPSLLELRLSNCSLHHF  220 (840)
Q Consensus       180 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  220 (840)
                      +|++|++++|++..+++. ..+..+++|++|++++|.++..
T Consensus        88 ~L~~L~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          88 DLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             TCCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGS
T ss_pred             ccccceeccccccccccc-cccccccccchhhcCCCccccc
Confidence            888888888888876542 3345566666666666665544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=8e-14  Score=120.98  Aligned_cols=105  Identities=25%  Similarity=0.259  Sum_probs=76.3

Q ss_pred             CEEeCCCCCCCCCCccccccCCCCCcEEeccCCcccCCCCCCCCCCCCCCeEeccCccccCCCcccccCCCCCCEEEccC
Q 003200          109 SYLDLSSNDFQGVQIPRFIGSMRNLRYLNLSDTQFVGMIPPQLGNLSDLQFLDLSSNYLYVDNVWWLSGLSFLEHLDLRS  188 (840)
Q Consensus       109 ~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~  188 (840)
                      |+|||++|.++.  ++ .++.+++|++|++++|+++ .+|..++.+++|++|++++|.++..  +.+.++++|++|++++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCC
Confidence            678888888873  44 3788888999999998887 5677788888888888888888754  3477777788888777


Q ss_pred             cCCCCCcchhhhcCCCCCCCEEEcCCCCCCcC
Q 003200          189 VNLSKASDWLMATNTLPSLLELRLSNCSLHHF  220 (840)
Q Consensus       189 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  220 (840)
                      |++...+.. ..+..+++|++|++++|.+...
T Consensus        75 N~i~~~~~~-~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          75 NRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SCCCSSSTT-GGGGGCTTCCEEECTTSGGGGS
T ss_pred             CccCCCCCc-hhhcCCCCCCEEECCCCcCCcC
Confidence            777766432 2345556666666666665544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=9.7e-14  Score=120.45  Aligned_cols=103  Identities=23%  Similarity=0.343  Sum_probs=64.4

Q ss_pred             ceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCcccccCcccccCCCCCCeEeCCCCccccc
Q 003200          679 QILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGR  758 (840)
Q Consensus       679 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  758 (840)
                      |+||+++|+++ .++ .+..++.|                   ++||+++|+++ .+|..++.+++|++|++++|+++ .
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L-------------------~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~   57 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLV-------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-N   57 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTC-------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-C
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCC-------------------CEEECCCCccC-cchhhhhhhhccccccccccccc-c
Confidence            45666666665 333 24444444                   66677777666 45556666777777777777776 3


Q ss_pred             CCcchhccCCCCeEeCCCCcccccC-CccccCCCCCCeEeccCCcccc
Q 003200          759 IPESIGTMRALESVDFSVNQLSGEI-PQSMSSLTFLNHLNLSNNNLTG  805 (840)
Q Consensus       759 ~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g  805 (840)
                      +| .++.+++|++|++++|++++.. +..+..+++|++|++++|++++
T Consensus        58 l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          58 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            44 3667777777777777776332 2456667777777777777664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.4e-13  Score=124.28  Aligned_cols=74  Identities=11%  Similarity=0.140  Sum_probs=37.7

Q ss_pred             eEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCC--cchhccCCCCeEeCCCCcccccCCc----cccCCCCCCe
Q 003200          722 SLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIP--ESIGTMRALESVDFSVNQLSGEIPQ----SMSSLTFLNH  795 (840)
Q Consensus       722 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~  795 (840)
                      +.|++++|+++...+..+..+++|+.|++++|+++. ++  ..+..+++|++|++++|+++ ..|.    .++.+++|++
T Consensus        66 ~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~  143 (162)
T d1a9na_          66 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  143 (162)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             hhhhcccccccCCCccccccccccccceeccccccc-cccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCe
Confidence            455555555543333333445555555555555552 22  24555566666666666654 2332    3455566666


Q ss_pred             Ee
Q 003200          796 LN  797 (840)
Q Consensus       796 L~  797 (840)
                      ||
T Consensus       144 LD  145 (162)
T d1a9na_         144 LD  145 (162)
T ss_dssp             ET
T ss_pred             eC
Confidence            55

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=2.5e-14  Score=150.12  Aligned_cols=88  Identities=25%  Similarity=0.222  Sum_probs=41.2

Q ss_pred             CcEEEccCCcCcccCCchhhhccCCCCcccEEeccCCcCccc-----cCccccCCCCcCEEEccCCcCCCC----CCccc
Q 003200          529 LVYLDFSNNSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE-----IPDCWMSYQNLKVLKLSNNKFSGN----LPNSL  599 (840)
Q Consensus       529 L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l  599 (840)
                      ++.+++++|.+.......+...+...+.|++|++++|.++..     +...+..+++|++|++++|.++..    +...+
T Consensus       160 L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l  239 (344)
T d2ca6a1         160 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  239 (344)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             cceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccc
Confidence            334444444443333233333344455666666666665431     223344555566666665555421    12233


Q ss_pred             CCCCcccEEEccCCcCc
Q 003200          600 GSITSLVWLYLRKNRLS  616 (840)
Q Consensus       600 ~~l~~L~~L~L~~n~l~  616 (840)
                      ..+++|++|++++|.++
T Consensus       240 ~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGCTTCCEEECTTCCCC
T ss_pred             cccccchhhhhhcCccC
Confidence            44455555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=1.7e-13  Score=130.07  Aligned_cols=124  Identities=21%  Similarity=0.259  Sum_probs=68.7

Q ss_pred             ccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCC
Q 003200          650 RFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRN  729 (840)
Q Consensus       650 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N  729 (840)
                      .+++|++|++++|+|+.. + .+..+++|+.|++++|.++ .+|.....+..|                   +.|++++|
T Consensus        46 ~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L-------------------~~L~l~~N  103 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-------------------EELWISYN  103 (198)
T ss_dssp             HTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHC-------------------CEEECSEE
T ss_pred             cccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccc-------------------cccccccc
Confidence            344555555555555432 2 3455556666666666554 333322222222                   66666666


Q ss_pred             cccccCcccccCCCCCCeEeCCCCcccccCC-cchhccCCCCeEeCCCCcccccCCcc----------ccCCCCCCeEe
Q 003200          730 NFSGEILSEVTNLKALQSINFSFNTFTGRIP-ESIGTMRALESVDFSVNQLSGEIPQS----------MSSLTFLNHLN  797 (840)
Q Consensus       730 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  797 (840)
                      +++. + +.+..+++|+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       104 ~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         104 QIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            6653 2 345666677777777777663221 35666777777777777765443332          45677777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-11  Score=111.21  Aligned_cols=110  Identities=15%  Similarity=0.107  Sum_probs=85.3

Q ss_pred             CccccceeecccccccccCCccccccccCcccccccCcccccccCCcceEEeCCCCc-ccccCcccccCCCCCCeEeCCC
Q 003200          674 DLAFLQILDLADNNLSGAIPKCISNLTGMVTVKSFTGSVVYREILPLVSLLDISRNN-FSGEILSEVTNLKALQSINFSF  752 (840)
Q Consensus       674 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~  752 (840)
                      .+...+.++.+++.+. ..|..+..++++                   +.|++++|+ ++...+..|.++++|+.|++++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l-------------------~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~   65 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENL-------------------TELYIENQQHLQHLELRDLRGLGELRNLTIVK   65 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCC-------------------SEEECCSCSSCCEECGGGSCSCCCCSEEECCS
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCcccc-------------------CeeecCCCccccccCchhhccccccCcceeec
Confidence            3444566778877777 667667666665                   788887664 7766677788899999999999


Q ss_pred             CcccccCCcchhccCCCCeEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 003200          753 NTFTGRIPESIGTMRALESVDFSVNQLSGEIPQSMSSLTFLNHLNLSNNNLT  804 (840)
Q Consensus       753 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  804 (840)
                      |+++...|.+|..+++|++|||++|+++ .+|........|+.|+|++|++.
T Consensus        66 N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          66 SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999777888999999999999999998 55555444557999999999873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=5.4e-13  Score=126.51  Aligned_cols=128  Identities=17%  Similarity=0.225  Sum_probs=70.6

Q ss_pred             cccccCCCCcEEeCCCCcccccCChhhhhccCCccEEEccCCcccccCCccccCccccceeecccccccccCCccccccc
Q 003200          621 ISLKNCTALASLDVDENEFVGNIPTWFGERFSRMLVLILRSNQFHGPLPKTICDLAFLQILDLADNNLSGAIPKCISNLT  700 (840)
Q Consensus       621 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  700 (840)
                      ..+..+++|++|++++|+++ .++ .+. .+++|++|++++|.++. +|.....+++|+.|++++|+++. ++ .+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~-~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-CCC-CHH-HHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC-HH-HHHHHH
T ss_pred             hHHhcccccceeECcccCCC-Ccc-ccc-CCccccChhhccccccc-ccccccccccccccccccccccc-cc-cccccc
Confidence            34444455555555555544 232 122 44555555555555542 33333334556666666666652 22 233444


Q ss_pred             cCcccccccCcccccccCCcceEEeCCCCcccccCc-ccccCCCCCCeEeCCCCcccccCCcc----------hhccCCC
Q 003200          701 GMVTVKSFTGSVVYREILPLVSLLDISRNNFSGEIL-SEVTNLKALQSINFSFNTFTGRIPES----------IGTMRAL  769 (840)
Q Consensus       701 ~L~~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L  769 (840)
                      +|                   +.|++++|+++.... ..+..+++|+.|++++|++....+..          +..+++|
T Consensus       116 ~L-------------------~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L  176 (198)
T d1m9la_         116 NL-------------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             HS-------------------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSC
T ss_pred             cc-------------------cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCc
Confidence            33                   667777777663221 35677778888888888776544432          5678888


Q ss_pred             CeEe
Q 003200          770 ESVD  773 (840)
Q Consensus       770 ~~L~  773 (840)
                      +.||
T Consensus       177 ~~LD  180 (198)
T d1m9la_         177 KKLD  180 (198)
T ss_dssp             CEES
T ss_pred             CEeC
Confidence            8876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=8.7e-11  Score=106.13  Aligned_cols=58  Identities=19%  Similarity=0.162  Sum_probs=30.1

Q ss_pred             eEEeCCCCcccccCcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCccc
Q 003200          722 SLLDISRNNFSGEILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLS  780 (840)
Q Consensus       722 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  780 (840)
                      +.|++++|+|+...+..|..+++|++|+|++|+++...+..| ...+|+.|+|++|++.
T Consensus        59 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT-CSCCCCEEECCSSCCC
T ss_pred             CcceeeccccCCcccccccccccccceeccCCCCcccChhhh-ccccccccccCCCccc
Confidence            555555555554445555555555556666665553222223 2334556666666553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3.5e-08  Score=89.32  Aligned_cols=84  Identities=21%  Similarity=0.175  Sum_probs=55.1

Q ss_pred             CCcceEEeCCCCccccc--CcccccCCCCCCeEeCCCCcccccCCcchhccCCCCeEeCCCCcccccCCcc-------cc
Q 003200          718 LPLVSLLDISRNNFSGE--ILSEVTNLKALQSINFSFNTFTGRIPESIGTMRALESVDFSVNQLSGEIPQS-------MS  788 (840)
Q Consensus       718 ~~~L~~L~Ls~N~l~~~--~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------l~  788 (840)
                      ++.|++|+|++|+|+..  ++..+..+++|+.|+|++|+++...+-.+.....|+.|++++|++.+.....       +.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            45557778888877743  2345667788888888888888433323444556888888888887554422       55


Q ss_pred             CCCCCCeEeccCCcc
Q 003200          789 SLTFLNHLNLSNNNL  803 (840)
Q Consensus       789 ~l~~L~~L~ls~N~l  803 (840)
                      .+++|+.||  +..+
T Consensus       144 ~~P~L~~LD--g~~v  156 (162)
T d1koha1         144 RFPKLLRLD--GHEL  156 (162)
T ss_dssp             TSTTCCEET--TEEC
T ss_pred             HCCCCCEEC--cCCC
Confidence            677888776  4444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.5e-08  Score=90.32  Aligned_cols=17  Identities=47%  Similarity=0.675  Sum_probs=7.9

Q ss_pred             CCCCCCeEeccCccccC
Q 003200          153 NLSDLQFLDLSSNYLYV  169 (840)
Q Consensus       153 ~l~~L~~L~Ls~n~~~~  169 (840)
                      ++++|++|++++|+++.
T Consensus        63 ~~~~L~~L~Ls~N~i~~   79 (162)
T d1koha1          63 NIPELLSLNLSNNRLYR   79 (162)
T ss_dssp             HCTTCCCCCCCSSCCCC
T ss_pred             hCCCCCEeeCCCccccC
Confidence            34444444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=5.9e-06  Score=74.58  Aligned_cols=88  Identities=18%  Similarity=0.168  Sum_probs=41.4

Q ss_pred             CCCcEEEccCC-cCcccCCchhhhccCCCCcccEEeccCCcCcccc----CccccCCCCcCEEEccCCcCCCCC----Cc
Q 003200          527 SNLVYLDFSNN-SFSGSISHFLCYRVNETKSLEGLKLTDNYLQGEI----PDCWMSYQNLKVLKLSNNKFSGNL----PN  597 (840)
Q Consensus       527 ~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~  597 (840)
                      ++|+.|+++++ .++......+...+...+.|++|++++|.+....    ...+...+.|++|++++|.++...    ..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            44555555543 3443333334444555556666666666554321    122333455555555555554321    11


Q ss_pred             ccCCCCcccEEEccCCc
Q 003200          598 SLGSITSLVWLYLRKNR  614 (840)
Q Consensus       598 ~l~~l~~L~~L~L~~n~  614 (840)
                      .+...++|++|++++|.
T Consensus        95 aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          95 STLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTTTCCCSEEECCCCS
T ss_pred             HHHhCCcCCEEECCCCc
Confidence            23344455555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.46  E-value=1.9e-05  Score=71.07  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=32.4

Q ss_pred             hhcCCCCCCCEEEcCCCCCCcCCCCCCCCCCcccCCCCCCEEECcCCCCCCC----CcccccCCCCCcEEEcccCc
Q 003200          199 MATNTLPSLLELRLSNCSLHHFPTLASPIPRGLQNLTSLKHLDLDSNHFNSS----IPDWLYKFSPLECLNLRNNS  270 (840)
Q Consensus       199 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~  270 (840)
                      ..+...+.|++|+|++|.+.....  ..+...+...+.|++|++++|.++..    +...+...+.|++|++++|.
T Consensus        38 ~~L~~n~~L~~L~Ls~n~l~~~~~--~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          38 EAACNSKHIEKFSLANTAISDSEA--RGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHH--TTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHhhCCccceeeccccccchhHH--HHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            344455555555555555443211  01113344445566666666655432    12233444555566555553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.99  E-value=8.3e-05  Score=66.77  Aligned_cols=66  Identities=11%  Similarity=0.130  Sum_probs=32.3

Q ss_pred             CCCcEEEccC-CcCcccCCchhhhccCCCCcccEEeccCCcCccc----cCccccCCCCcCEEEccCCcCC
Q 003200          527 SNLVYLDFSN-NSFSGSISHFLCYRVNETKSLEGLKLTDNYLQGE----IPDCWMSYQNLKVLKLSNNKFS  592 (840)
Q Consensus       527 ~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  592 (840)
                      ++|++|++++ +.++......++..+...+.|++|++++|.++..    +...+...++++.+++++|.+.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3455555554 3344433334444445555666666666655432    1122334455555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.82  E-value=0.00017  Score=64.70  Aligned_cols=17  Identities=0%  Similarity=0.124  Sum_probs=8.6

Q ss_pred             cCccccceeeccccccc
Q 003200          673 CDLAFLQILDLADNNLS  689 (840)
Q Consensus       673 ~~l~~L~~L~Ls~N~l~  689 (840)
                      ...+.|+.|++++|.+.
T Consensus        43 ~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCCSCCEEECTTSCCC
T ss_pred             hcCCccCeeeccCCccc
Confidence            34445555555555544