Citrus Sinensis ID: 003218

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------84

MVENLIPCYRFNLIILSYCVFLSCFFVRSYSLGEVDAYGTFSISSFRYPETRLRPFDSRYFRVDLPPWFSSLSIVLESDVDLDARSIAKVPESALPLICLRDGSLPLPQVTNAFVKGLVLGSFSNGSSNELEDIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFFNGVGAIRTQSKMIIRGPSYSFTANISVEGCTTSTMWGQYCNQSVDPLSCVRSDSYNLTEQFPDSKLNNKTTENGIFCRNSFDSPCHGNGEIKVFFLDVLGIAEQLIIMAMNVTFSMTQSNNTLNAGGANIVCFARHGAMPSEILHDYSGDISNGPLIVDSPKVGRWYITIIPVNLSKELGETRNAGIQVCYSLEWQVLECPMGKAGLNCKWERYILQTVIRKETLFESYYIPVSEKVPSDSAAFPLEPLLSNSSYDEGQDNTWTYFLLDIPRGAAGGSIHIQLTSDTKIKHEIYAKSGGLPSLQSWDYYYANRTNNSVGSMFFKLYNSSEEKVDFYILYVREGTWGFGIRHVNTSKSETVMSVSLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVELVSHRGHVQQSVALIASNAAALLPAYQALRQKAFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLETSQSYWIWHSIWHVSIYTSSFFFLCSKVSSLNSENQRPLDGTYELTRQDSMPRGDSEGRERPEVLTI

cccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccccccccEEEEEEEccccccEEEEEEEcccccccccccccccccccEEEEEcccccccccHHHHHHccccccccccccccccccccccEEEccccEEEEEEEEcccccccEEEEEEccccccccccEEEEEcccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEEEEEcccHHHHEEEEEEEEEEEEEccccccccccccEEEEEcccccccccccccccccccccEEEccccccEEEEEEEEcccccccccccccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEEEEcccEEEEEEEcccccccccccccccccccccccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccEEEEEEEEccccccccccccccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHccEEEEEEcccccccccccccccccccccccccccccccccccccccEEc

cccccccccccccEEEEEEEEEEEEEEccccccccccccEEEEEEcccccEEEEcccEEEEEEEccccccEEEEEEcccccccHHHHcccccccccEEEEcccccccccccHHHHHHHHcccccccccccccccccHHHcccccccEEEEEEcccccccEEEEEEEcccccccccccEEEEcccEEEEEEEEEEcccccccccccccccEccccccccccccccccccccccccccccccEEEcccccccccccccEEEEEEEcccHHHEEEEEEEcccEcccccccccccccccEEEEEccccccccHHcccccccccccEEEEcccccEEEEEEEEccccccccccccccEEEEEEEEEEEEEcccccccccccHHHHHHHHccccccccccEEEEccccccccccccccHHHHcccccccccccEEEEEEEEcccccccEEEEEEEEcccEEEEEEEEEccccccccccccEEEcccccccccEEEEEEEccccccEEEEEccccccEEEEEEEcccccccEEEEEEEEcccccccccccEEEEEEcccEEEEEEEEEcccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccHcccccccccccccccEHcccccccccccccccccEEEEc

mvenlipcyrFNLIILSYCVFLSCFFvrsyslgevdaygtfsissfrypetrlrpfdsryfrvdlppwfssLSIVlesdvdldarsiakvpesalpliclrdgslplpqvTNAFVKGLVLgsfsngssnelediqneeqcypmqknisvkltneqispgawylgffngvgairtqskmiirgpsysftanisvegcttstmwgqycnqsvdplscvrsdsynlteqfpdsklnnkttengifcrnsfdspchgngeiKVFFLDVLGIAEQLIIMAMNVTFSMtqsnntlnaggANIVCFarhgampseilhdysgdisngplivdspkvgrwYITIIPVnlskelgetrnaGIQVCYSLEWQvlecpmgkaglnckWERYILQTVIRKETLFesyyipvsekvpsdsaafplepllsnssydegqdntwTYFLLdiprgaaggsihiqltsdtkikheiyaksgglpslqswdyyyanrtnnsvGSMFFKLYNSSEEKVDFYILYVREGtwgfgirhvntskseTVMSVSlercpkrcsshgqcrnafdasgltlysfcacdrdhggfdcSVELVSHRGHVQQSVALIASNAAALLPAYQALRQKAFAEWVLFTASgissglyhacdvgtwcALSFNVLQFMDFWLSFMAVVSTFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLETSQSYWIWHSIWHVSIYTSSFFFLCSKVsslnsenqrpldgtyeltrqdsmprgdsegrerpevlti

MVENLIPCYRFNLIILSYCVFLSCFFVRSYSLGEVDAYGtfsissfrypetRLRPFDSRYFRVDLPPWFSSLSIVLESDVDLDARSIAKVPESALPLICLRDGSLPLPQVTNAFVKGLVLGSFSNGSSNELEDIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFFNGVGAIRTQSKMIIRGPSYSFTANISVEGCTTSTMWGQYCNQSVDPLSCVRSDSYNLteqfpdsklnnkTTENGIFCRNSFDSPCHGNGEIKVFFLDVLGIAEQLIIMAMNVTFSMTQSNNTLNAGGANIVCFARHGAMPSEILHDYSGDISNGPLIVDSPKVGRWYITIIPVnlskelgeTRNAGIQVCYSLEWQVLECPMGKAGLNCKWERYILQTVIRKETLFESYYIPVSEKVPSDSAAFPLEPLlsnssydegQDNTWTYFLLDIPRGAAGGSIHIQLTSDTKIKHEIYAKSGGLPSLQSWDYYYANRTNNSVGSMFFKLYNSSEEKVDFYILYVREGTWGFGIRHVNTSKSETVMSVSLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVELVSHRGHVQQSVALIASNAAALLPAYQALRQKAFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLETSQSYWIWHSIWHVSIYTSSFFFLCSKVSSlnsenqrpldgtyeltrqdsmprgdsegrerpevlti

MVENLIPCYRFNLIILSYCVFLSCFFVRSYSLGEVDAYGTFSISSFRYPETRLRPFDSRYFRVDLPPWFSSLSIVLESDVDLDARSIAKVPESALPLICLRDGSLPLPQVTNAFVKGLVLGSFSNGSSNELEDIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFFNGVGAIRTQSKMIIRGPSYSFTANISVEGCTTSTMWGQYCNQSVDPLSCVRSDSYNLTEQFPDSKLNNKTTENGIFCRNSFDSPCHGNGEIKVFFLDVLGIAEQLIIMAMNVTFSMTQSNNTLNAGGANIVCFARHGAMPSEILHDYSGDISNGPLIVDSPKVGRWYITIIPVNLSKELGETRNAGIQVCYSLEWQVLECPMGKAGLNCKWERYILQTVIRKETLFESYYIPVSEKVPSDSAAFPLEPLLSNSSYDEGQDNTWTYFLLDIPRGAAGGSIHIQLTSDTKIKHEIYAKSGGLPSLQSWDYYYANRTNNSVGSMFFKLYNSSEEKVDFYILYVREGTWGFGIRHVNTSKSETVMSVSLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVELVSHRGHVQQSVALIASNAAALLPAYQALRQKAFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNiilvisigaaglligllvelsTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLETSQSYWIWHSIWHVSIYTSSFFFLCSKVSSLNSENQRPLDGTYELTRQDSMPRGDSEGRERPEVLTI

***NLIPCYRFNLIILSYCVFLSCFFVRSYSLGEVDAYGTFSISSFRYPETRLRPFDSRYFRVDLPPWFSSLSIVLESDVDLDARSIAKVPESALPLICLRDGSLPLPQVTNAFVKGLVLGSF****************CYPMQKNISVKLTNEQISPGAWYLGFFNGVGAIRTQSKMIIRGPSYSFTANISVEGCTTSTMWGQYCNQSVDPLSCVRSDSYNLTE**********TTENGIFCRNSFDSPCHGNGEIKVFFLDVLGIAEQLIIMAMNVTFSMTQSNNTLNAGGANIVCFARHGAMPSEILHDYSGDISNGPLIVDSPKVGRWYITIIPVNLSKELGETRNAGIQVCYSLEWQVLECPMGKAGLNCKWERYILQTVIRKETLFESYYIPVSE***********************QDNTWTYFLLDIPRGAAGGSIHIQLTSDTKIKHEIYAKSGGLPSLQSWDYYYANRTNNSVGSMFFKLYNSSEEKVDFYILYVREGTWGFGIRHVNTSKSETVMSVSLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVELVSHRGHVQQSVALIASNAAALLPAYQALRQKAFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLETSQSYWIWHSIWHVSIYTSSFFFLCSKV***************************************

**ENLIPCYRFNLIILSYCVFLSCFFVRSYSLGEVDAYGTFSISSFRYPETRLRPFDSRYFRVDLPPWFSSLSIVLESDVDL********PESALPLICLRDGSLPLPQVTNAFVKGLVLGSFSN**********NEEQCYPMQKNISVKLTNEQISPGAWYLGFFNGVGAIRTQSKMIIRGPSYSFTANISVEGCTTSTMWGQYCNQSVDPLSCV************DSKLNNKTTENGIFCRNSFDSPCHGNGEIKVFFLDVLGIAEQLIIMAMNVTFSMTQSN**LNAGGANIVCFARHGAMPSEILH***GDISNGPLIVDSPKVGRWYITIIPVN*************QVCYSLEWQVLECPMGKAGLNCKWERYILQTVIRKETLFE**YIP**EKVPSDSAAFPLEPLLSN**YDEGQDNTWTYFLLDIPRGAAGGSIHIQLTSDTKIKHEIYAKSGGLPSLQSWDYYYANRTNNS*************EKVDFYILYVREGTWGFGIRHVNTSKSETVMSVSLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVELVSHRGHVQQSVALIASNAAALLPAYQALRQKAFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLETSQSYWIWHSIWHVSIYTSSFFFLCS**************GTYELTRQ**************EVLTI

**ENLIPCYRFNLIILSYCVFLSCFFVRSYSLGEVDAYGTFSISSFRYPETRLRPFDSRYFRVDLPPWFSSLSIVLESDVDLDARSIAKVPESALPLICLRDGSLPLPQVTNAFVKGLVLGSFSNGSSNELEDIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFFNGVGAIRTQSKMIIRGPSYSFTANISVEGCTTSTMWGQYCNQSVDPLSCVRSDSYNLTEQFPDSKLNNKTTENGIFCRNSFDSPCHGNGEIKVFFLDVLGIAEQLIIMAMNVTFSMTQSNNTLNAGGANIVCFARHGAMPSEILHDYSGDISNGPLIVDSPKVGRWYITIIPVNLSKELGETRNAGIQVCYSLEWQVLECPMGKAGLNCKWERYILQTVIRKETLFESYYIPVSEKVPSDSAAFPLEPLLSNSSYDEGQDNTWTYFLLDIPRGAAGGSIHIQLTSDTKIKHEIYAKSGGLPSLQSWDYYYANRTNNSVGSMFFKLYNSSEEKVDFYILYVREGTWGFGIRHVNTSKSETVMSVSLERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVELVSHRGHVQQSVALIASNAAALLPAYQALRQKAFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLETSQSYWIWHSIWHVSIYTSSFFFLCSKV***********************P******RERPEVLT*

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		838	2.2.26 [Sep-21-2011]
A6NDV4		472	Transmembrane protein 8B	yes	no	0.341	0.605	0.267	2e-12
A6QLK4		472	Transmembrane protein 8B	yes	no	0.340	0.603	0.253	2e-12
B1AWJ5		472	Transmembrane protein 8B	yes	no	0.341	0.605	0.264	4e-12
Q9HCN3		771	Transmembrane protein 8A	no	no	0.368	0.400	0.220	2e-08
Q9ESN3		769	Transmembrane protein 8A	no	no	0.285	0.310	0.228	3e-05

>sp\|A6NDV4\|TMM8B_HUMAN Transmembrane protein 8B OS=Homo sapiens GN=TMEM8B PE=1 SV=2	Back alignment and function desciption

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 142/329 (43%), Gaps = 43/329 (13%)

Query: 489 FKLYNSSEEKV-DFYILYVREGTW--------GFGIRHVN--TSKSETVMSVSLERCPKR 537
           F L  S+  +V    I + + GTW        G G R V    + +E  M   L  C   
Sbjct: 130 FLLSVSATTRVARLRIPFPQTGTWFLALRSLCGVGPRFVRCRNATAEVRMRTFLSPCVDD 189

Query: 538 CSSHGQCRNAFDASGLTLYSFCACDRDHGGFDC--SVELVSHRGHVQQSVALIASNAAAL 595
           C  +GQC+     +   LY+ C C     G+ C  S + +++   +  ++ L  SN   L
Sbjct: 190 CGPYGQCK--LLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFL 247

Query: 596 LPAYQALRQKAFAEWVLFTASGISSGLYHACD---VGTWCALSFNVLQFMDFWLSFMAVV 652
            P   A+R +   E  ++T +   S  YHACD   +  +C + ++VLQF DF  S M+V 
Sbjct: 248 PPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVW 307

Query: 653 STFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNIILVISIGAAGLLIGLLVELST 712
            T I +  +   +K+ ++ + A+L + MA+         +L  S+ A G+       L+T
Sbjct: 308 VTVIAMARLQPVVKQVLYLLGAMLLS-MALQLDRHGLWNLLGPSLFALGI-------LAT 359

Query: 713 KFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLET 772
            +   S+R   C     R+     WL             G ++ G A L  A +    ET
Sbjct: 360 AWTVRSVRRRHCYPPTWRR-----WLFYLCP--------GSLIAGSAVLLYAFV----ET 402

Query: 773 SQSYWIWHSIWHVSIYTSSFFFLCSKVSS 801
             +Y+  HSIWH+ I  S  F L  +  +
Sbjct: 403 RDNYFYIHSIWHMLIAGSVGFLLPPRAKT 431

May function as a regulator of the EGFR pathway. Probable tumor suppressor which may function in cell growth, proliferation and adhesion.
Homo sapiens (taxid: 9606)

>sp\|A6QLK4\|TMM8B_BOVIN Transmembrane protein 8B OS=Bos taurus GN=TMEM8B PE=2 SV=1	Back alignment and function description

>sp\|B1AWJ5\|TMM8B_MOUSE Transmembrane protein 8B OS=Mus musculus GN=Tmem8b PE=2 SV=1	Back alignment and function description

>sp\|Q9HCN3\|TMM8A_HUMAN Transmembrane protein 8A OS=Homo sapiens GN=TMEM8A PE=1 SV=3	Back alignment and function description

>sp\|Q9ESN3\|TMM8A_MOUSE Transmembrane protein 8A OS=Mus musculus GN=Tmem8a PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		838
224130332		876	predicted protein [Populus trichocarpa]	0.958	0.916	0.652	0.0
225454359		823	PREDICTED: uncharacterized protein LOC10	0.958	0.975	0.655	0.0
297745357		805	unnamed protein product [Vitis vinifera]	0.947	0.986	0.657	0.0
255541650		803	conserved hypothetical protein [Ricinus	0.936	0.977	0.641	0.0
356530058		810	PREDICTED: uncharacterized protein LOC10	0.952	0.985	0.620	0.0
356566910		799	PREDICTED: uncharacterized protein LOC10	0.933	0.978	0.608	0.0
449441628		837	PREDICTED: uncharacterized protein LOC10	0.959	0.960	0.596	0.0
356522598		825	PREDICTED: uncharacterized protein LOC10	0.970	0.985	0.584	0.0
357504417		839	Transmembrane protein 8B [Medicago trunc	0.928	0.927	0.599	0.0
356560341		823	PREDICTED: uncharacterized protein LOC10	0.922	0.939	0.589	0.0

>gi\|224130332\|ref\|XP_002320811.1\| predicted protein [Populus trichocarpa] gi\|222861584\|gb\|EEE99126.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1130 bits (2923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/857 (65%), Positives = 658/857 (76%), Gaps = 54/857 (6%)

Query: 20  VFLSCFFVRSYSLGEVDAYGTFSISSFRYPETRLRPFDSRYFRVDLPPWFSSLSIVLESD 79
           VF S  F  S+S  ++  Y TF++SSF YP T +RPFD RY RVDLP WFSS+SI ++SD
Sbjct: 23  VFFSLLFCCSHSANQLGPYNTFTVSSFSYPTTNVRPFDLRYIRVDLPAWFSSVSITVQSD 82

Query: 80  VDLDARSIAKVPESALPLICLRDGSLPLPQVTNA------------------FVKGLVLG 121
           VDLDA+SI+KVP+S LPLIC+RDGS PLP V N+                   V  LV G
Sbjct: 83  VDLDAKSISKVPKSTLPLICIRDGSPPLPDVLNSSLIELVSLFESNEGKTEVAVTVLVSG 142

Query: 122 SFSNGSSNELEDIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFFNGVGAIRTQSKMIIR 181
           SFSNGS   ++  QN  QCYPMQ+NI+  LTNEQISPG WYLG FNG+G  RTQSKMIIR
Sbjct: 143 SFSNGSFQRIQGPQNV-QCYPMQRNITATLTNEQISPGVWYLGLFNGIGPTRTQSKMIIR 201

Query: 182 GPSYSFTANISVEGCTTSTMWGQYCNQSVDPLSCVRSDSYNLTEQFPDSKLNNKTTENGI 241
            PSYSF+ANISVEGC TSTMWGQYCNQ++DP SC ++ SYN TE F  S  N +T +N +
Sbjct: 202 SPSYSFSANISVEGCATSTMWGQYCNQTIDPFSCSQAYSYNPTEIF--SGANLQTIQNVV 259

Query: 242 FCRNSFDSPCHGNGEIKVFFLDVLGIAEQLIIMAMNVTFSMTQSNNTLNAGGANIVCFAR 301
            C+ +F+S CHG GE KV+ L+VLGIAEQL I+A NV+F+   +N+T NA  AN++ FAR
Sbjct: 260 SCK-TFESYCHGEGEPKVYALEVLGIAEQLKIVAANVSFTAAPTNSTGNASVANLLYFAR 318

Query: 302 HGAMPSEILHDYSGDISNGPLIVDSPKVGRWYITIIPVNLSKELGETRNAGIQVCYSLEW 361
           HGAMPS  L+DYSGD+S  PLI+  PKVGRW++TI+P NLSKE+G  +N  +QVCYS+ W
Sbjct: 319 HGAMPSMALYDYSGDMSKAPLIIRKPKVGRWFVTILPTNLSKEVGGIQNTNMQVCYSITW 378

Query: 362 QVLECPMGKAGLNCKWERYILQTVIRKE-TLFESYYIPVSEKVPSDSAAFPLEPLLSNSS 420
           Q+L CP+GKAGLNC  E+Y+LQTV+R++ T FESYY+P+S KV  DSA FPLEPL SNSS
Sbjct: 379 QLLNCPVGKAGLNCSSEKYMLQTVLRRDSTPFESYYLPLSGKVSPDSADFPLEPLSSNSS 438

Query: 421 YDEGQDNTWTYFLLDIPRGAAGGSIHIQLTSDTKIKHEIYAKSGGLPSLQSWDYYYANRT 480
           Y    D +WTYFLL+IPRGAAGG+IHI++TSD KI +EIYA+ GGLPSL SWDYYYANRT
Sbjct: 439 YSNETDTSWTYFLLNIPRGAAGGNIHIRMTSDVKINYEIYARYGGLPSLDSWDYYYANRT 498

Query: 481 NNSVGSMFFKLYNSSEEKVDFYILYVREGTWGFGIRHVNT----SKSETVMSVSLERCPK 536
            +S GSMFF  YNS+EEK+DFYILYV+EGTW FG+R +NT    S  +TVMSVS+ERCPK
Sbjct: 499 RSSDGSMFFTSYNSTEEKIDFYILYVKEGTWTFGLRSLNTTIIPSNDQTVMSVSVERCPK 558

Query: 537 RCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVELVSHRGHVQQSVALIASNAAALL 596
           RCSSHG C+ A DASGL  YSFC+CDR HGGFDCS+E+VSH+GH+ QS+ALI SNAAA+L
Sbjct: 559 RCSSHGACKVALDASGLASYSFCSCDRTHGGFDCSIEIVSHQGHIWQSIALIGSNAAAIL 618

Query: 597 PAYQALRQKAFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFI 656
           PAY ALR KAFAEWV+FT+SGISSGLYHACDVGTWCALSF VLQFMDFWLSFMAVVSTFI
Sbjct: 619 PAYWALRHKAFAEWVIFTSSGISSGLYHACDVGTWCALSFGVLQFMDFWLSFMAVVSTFI 678

Query: 657 YLTTIDEALKRTIHTVVAILTAMMAITKAT--------------------------RSSN 690
           YLTTIDE  KR IHTVVAILTA+MAITKAT                          RSSN
Sbjct: 679 YLTTIDEVSKRAIHTVVAILTALMAITKATRYVSSLSDAFSRVLWEFKHVRLIKLCRSSN 738

Query: 691 IILVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFR 750
           IILV++IGA GLLIG LVE ST   S S   GFC+N+  R +TI   L N +KT+LRRFR
Sbjct: 739 IILVMAIGALGLLIGWLVEFSTNLSSLSFSRGFCLNVPTRWETIGAQLSNLVKTLLRRFR 798

Query: 751 WGFVLVGFAALAMAAISWKLETSQSYWIWHSIWHVSIYTSSFFFLCSKVSS-LNSENQRP 809
           WGFVL GF+ALAMAAISWKLE+S+SYWIWHS+WHV+IYTSSF FLCSKV   +NSEN+  
Sbjct: 799 WGFVLAGFSALAMAAISWKLESSESYWIWHSLWHVTIYTSSFLFLCSKVDKIINSENETT 858

Query: 810 LDGTYELTRQDSMPRGD 826
            DG Y LTRQDS  R +
Sbjct: 859 PDGNYGLTRQDSFSRAE 875

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225454359\|ref\|XP_002276054.1\| PREDICTED: uncharacterized protein LOC100258534 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297745357\|emb\|CBI40437.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255541650\|ref\|XP_002511889.1\| conserved hypothetical protein [Ricinus communis] gi\|223549069\|gb\|EEF50558.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356530058\|ref\|XP_003533601.1\| PREDICTED: uncharacterized protein LOC100778959 [Glycine max]	Back alignment and taxonomy information

>gi\|356566910\|ref\|XP_003551668.1\| PREDICTED: uncharacterized protein LOC100787532 [Glycine max]	Back alignment and taxonomy information

>gi\|449441628\|ref\|XP_004138584.1\| PREDICTED: uncharacterized protein LOC101222074 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356522598\|ref\|XP_003529933.1\| PREDICTED: uncharacterized protein LOC100777848 [Glycine max]	Back alignment and taxonomy information

>gi\|357504417\|ref\|XP_003622497.1\| Transmembrane protein 8B [Medicago truncatula] gi\|355497512\|gb\|AES78715.1\| Transmembrane protein 8B [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356560341\|ref\|XP_003548451.1\| PREDICTED: uncharacterized protein LOC100816545 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		838
TAIR\|locus:2062907		807	AT2G46060 "AT2G46060" [Arabido	0.936	0.972	0.560	4.9e-243
UNIPROTKB\|A6NDV4		472	TMEM8B "Transmembrane protein	0.208	0.370	0.281	7.8e-13
MGI\|MGI:2441680		472	Tmem8b "transmembrane protein	0.208	0.370	0.276	1.3e-12
UNIPROTKB\|A6QLK4		472	TMEM8B "Transmembrane protein	0.208	0.370	0.276	1.3e-12
UNIPROTKB\|F1STB0		779	TMEM8B "Uncharacterized protei	0.208	0.224	0.276	3.1e-11
RGD\|1310012		892	Tmem8b "transmembrane protein	0.208	0.196	0.276	4.1e-11
UNIPROTKB\|F1MLC4		744	TMEM8B "Transmembrane protein	0.208	0.235	0.276	4.2e-11
UNIPROTKB\|K4DI83		578	TMEM8A "Transmembrane protein	0.278	0.403	0.229	1.2e-08
UNIPROTKB\|Q9HCN3		771	TMEM8A "Transmembrane protein	0.278	0.302	0.229	2.5e-08
MGI\|MGI:1926283		769	Tmem8 "transmembrane protein 8	0.181	0.197	0.260	1.5e-07

TAIR\|locus:2062907 AT2G46060 "AT2G46060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2342 (829.5 bits), Expect = 4.9e-243, P = 4.9e-243
 Identities = 463/826 (56%), Positives = 586/826 (70%)

Query:    14 IILSYCVFLSCFFVRSYSLGEV-DAYGTF-SISSFRYPETRLRPFDSRYFRVDLPPWFSS 71
             ++L   V  SC       L +  D  G F ++SSFRYPE+ +RP+D+RY RVDLPPWFSS
Sbjct:     7 LLLRTLVVFSCALSICNCLQDAADNNGNFFTVSSFRYPESEVRPYDTRYIRVDLPPWFSS 66

Query:    72 LSIVLESDVDLDARSIAKVPESALPLICLRDGSLPLPQVTNAFVKGLVLGSFSNGSSNEL 131
             L++ +ESDVD+ A+SI+K+ +S LP+IC RDGS PLP  +   ++GL LG F NGS    
Sbjct:    67 LNVAIESDVDITAKSISKISKSLLPVICFRDGSPPLPDASTNALQGLELGRFFNGSFERA 126

Query:   132 EDIQNEEQCYPMQKNISVKLTNEQISPGAWYLGFFNGVGAIRTQSKMIIRGPSYSFTANI 191
             +D +  +QCYPMQKNI+++LTNEQISPGAWY+G FNG+GA RTQ KMI+R  ++SF+ANI
Sbjct:   127 QDSEIAQQCYPMQKNITLRLTNEQISPGAWYVGLFNGIGATRTQGKMIVRSSAFSFSANI 186

Query:   192 SVEGCTTSTMWGQYCNQSVDPLSCVRSDSYNLTEQFPDSKLNNKTTENGIFCRNSFDSPC 251
             SVEGC T+TMWG +CNQ++ PLSC R D              N+T  + I C +SF S C
Sbjct:   187 SVEGCKTATMWGPFCNQTIYPLSCSRFD--------------NQTA-SVISCADSFPSSC 231

Query:   252 HGNGEIKVFFLDVLGIAEQLIIMAMNVTFSMTQSNNTLNAGGANIVCFARHGAMPSEILH 311
                 E K + LDV GIAEQL+IMA NV      SN +       ++C+AR  A  SE LH
Sbjct:   232 LTGAETKTYALDVDGIAEQLVIMASNVK---VDSNESY------LMCYARFEAFASETLH 282

Query:   312 DYSGDISNGPLIVDSPKVGRWYITIIPVNLSKELGETRNAGIQVCYSLEWQVLECPMGKA 371
             DY+ DI   PLIV+ PK GRWYI I          +  N+  +VC+S+  +VL CP+GKA
Sbjct:   283 DYAADIHKVPLIVNKPKAGRWYIVISLSGRENRFAQGTNSSSRVCFSINVKVLGCPVGKA 342

Query:   372 GLNCKWERYILQTVIRKETL--FESYYIPVSEKVPSDSAA-FPLEPLLSN-SSYDEGQDN 427
             G NC  + YILQ V+R+  L  F+SYY PV++   S S+  FPLEP++SN SS  E   +
Sbjct:   343 GPNCGQQIYILQAVMRRGWLTPFQSYYFPVNDASLSGSSTNFPLEPIVSNFSSIPELDTS 402

Query:   428 TWTYFLLDIPRGAAGGSIHIQLTSDTKIKHEIYAKSGGLPSLQSWDYYYANRTNNSVGSM 487
             TWTYFL++IP+G +GG IH +L SD+ I++E+Y + GGLP++   DYYY NRT+ S  SM
Sbjct:   403 TWTYFLMNIPQGGSGGHIHFRLLSDSTIQYEVYLRFGGLPTIDDRDYYYVNRTSAS-RSM 461

Query:   488 FFKLYNSSEEKVDFYILYVREGTWGFGIRHV---NT---SK-SETVMSVSLERCPKRCSS 540
             FF LYNSS+E VDFYILY REGTW FG+R +   NT   S+ S T++S+SLERCP+ CSS
Sbjct:   462 FFSLYNSSKEMVDFYILYAREGTWSFGLRQLIDSNTPAASRGSPTLVSLSLERCPRGCSS 521

Query:   541 HGQCRNAFDASGLTLYSFCACDRDHGGFDCSVELVSHRGHVQQSVALIASNAAALLPAYQ 600
             +GQCR AFDA+GLT YSFC+CDR HGGFDCS+E+VSH+ H+ QS+ALIASNAAALLPAY 
Sbjct:   522 YGQCRYAFDANGLTSYSFCSCDRTHGGFDCSIEIVSHQEHIVQSIALIASNAAALLPAYW 581

Query:   601 ALRQKAFAEWVLFTASGISSGLYHACDVGTWCALSFNVLQFMDFWLSFMAVVSTFIYLTT 660
             ALRQ+ + EWVLFT+SGISS LYHACDVGTWC LS+NVLQFMDFWLSFMAVV TF+YL+T
Sbjct:   582 ALRQREYPEWVLFTSSGISSALYHACDVGTWCVLSYNVLQFMDFWLSFMAVVGTFVYLST 641

Query:   661 IDEALKRTIHTVVAILTAMMAITKATRSSNXXXXXXXXXXXXXXXXXXXXXTKFRSFSLR 720
               EA+KRTIHTVVAILTA++A+T+ATR+SN                     TK+RS+   
Sbjct:   642 AGEAVKRTIHTVVAILTALLALTQATRASNIIIVLAIGSLGLLIGFLVEFVTKYRSYCGS 701

Query:   721 FGFCMNMVDRQQTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLETSQSYWIWH 780
              GF +NM+DR + + EW  N +KT+ +RFRWGFV  G  A  MAAIS+K+ETS SYW+WH
Sbjct:   702 AGFSLNMLDRPRAVKEWFSNLIKTLKKRFRWGFVAAGLVAFTMAAISFKVETSSSYWMWH 761

Query:   781 SIWHVSIYTSSFFFLCSKVSSLNSEN--QRPLDGTYELTRQDSMPR 824
             SIWH +IYTSSFFFLCSK++ +N EN      D  YELTRQDS+ R
Sbjct:   762 SIWHFTIYTSSFFFLCSKIAIVNHENLAHNGADN-YELTRQDSLSR 806

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB\|A6NDV4 TMEM8B "Transmembrane protein 8B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2441680 Tmem8b "transmembrane protein 8B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QLK4 TMEM8B "Transmembrane protein 8B" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1STB0 TMEM8B "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1310012 Tmem8b "transmembrane protein 8B" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MLC4 TMEM8B "Transmembrane protein 8B" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|K4DI83 TMEM8A "Transmembrane protein 8 (Five membrane-spanning domains), isoform CRA_a" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9HCN3 TMEM8A "Transmembrane protein 8A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1926283 Tmem8 "transmembrane protein 8 (five membrane-spanning domains)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		838
pfam12036		183	pfam12036, DUF3522, Protein of unknown function (D	1e-44

>gnl\|CDD\|152471 pfam12036, DUF3522, Protein of unknown function (DUF3522)	Back alignment and domain information

 Score =  158 bits (402), Expect = 1e-44
 Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 34/213 (15%)

Query: 577 HRGHVQQSVALIASNAAALLPAYQALRQKAFAEWVLFTASGISSGLYHACDVGT----WC 632
               + Q + L  SN A L   Y AL+++   E V++  +   S +YHAC+ G      C
Sbjct: 1   PFEQLLQFLLLTLSNLAFLPTIYVALKRRYVYEAVVYIFTMFFSFMYHACESGPGEIFLC 60

Query: 633 ALSFNVLQFMDFWLSFMAVVSTFIYLTTIDEALKRTIHTVVAILTAMMAITKATRSSNII 692
            LS++ L  +DF  SF A   T   L  +DE +KR++     ILTA++         N I
Sbjct: 61  ELSWHRLDNIDFIGSFGAWWVTLCALADLDEQVKRSLKYFGLILTAILQEKDPWGVWNTI 120

Query: 693 LVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQQTIMEWLRNFMKTILRRFRWG 752
             I I    L++  L+    + R +  R                             R  
Sbjct: 121 GPILIALLILIVKWLLRPKRRRRCYPPRLV---------------------------RGL 153

Query: 753 FVLVGFAALAMAAISWKLETSQSYWIWHSIWHV 785
           F L+         +    ET+ +Y I+HS+WH 
Sbjct: 154 FYLLPGVIFFALGLD---ETNDNYRIYHSLWHF 183

This family of proteins is functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		838
PF12036		186	DUF3522: Protein of unknown function (DUF3522); In	100.0
PF05875		262	Ceramidase: Ceramidase; InterPro: IPR008901 This e	97.87
PF04080		267	Per1: Per1-like ; InterPro: IPR007217 A member of	96.9
TIGR01065		204	hlyIII channel protein, hemolysin III family. This	96.38
PF12955		103	DUF3844: Domain of unknown function (DUF3844); Int	96.26
PF07974		32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.04
PF03006		222	HlyIII: Haemolysin-III related; InterPro: IPR00425	95.96
PRK15087		219	hemolysin; Provisional	95.55
KOG2970		319	consensus Predicted membrane protein [Function unk	94.06
KOG2329		276	consensus Alkaline ceramidase [Lipid transport and	93.4
PF13965		570	SID-1_RNA_chan: dsRNA-gated channel SID-1	92.24
COG1272		226	Predicted membrane protein, hemolysin III homolog	91.92
cd00053		36	EGF Epidermal growth factor domain, found in epide	89.43
PF00008		32	EGF: EGF-like domain This is a sub-family of the P	88.12
KOG1225		525	consensus Teneurin-1 and related extracellular mat	87.35
PHA02887		126	EGF-like protein; Provisional	87.04
cd00054		38	EGF_CA Calcium-binding EGF-like domain, present in	86.32
PF04863		56	EGF_alliinase: Alliinase EGF-like domain; InterPro	85.73
KOG4289		2531	consensus Cadherin EGF LAG seven-pass G-type recep	83.8
smart00179		39	EGF_CA Calcium-binding EGF-like domain.	83.42
PF12661		13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	83.37
KOG1225		525	consensus Teneurin-1 and related extracellular mat	82.45
PF04151		70	PPC: Bacterial pre-peptidase C-terminal domain; In	81.65
PF12036		186	DUF3522: Protein of unknown function (DUF3522); In	80.81

>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised	Back alignment and domain information

Probab=100.00  E-value=1.4e-47  Score=381.47  Aligned_cols=179  Identities=31%  Similarity=0.426  Sum_probs=163.7

Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhccccc----ceeeccchhHhHhHhHHHHHHHHH
Q 003218          578 RGHVQQSVALIASNAAALLPAYQALRQKAFAEWVLFTASGISSGLYHACDVG----TWCALSFNVLQFMDFWLSFMAVVS  653 (838)
Q Consensus       578 ~~~~~q~lLLtLSNLaFlP~I~vA~kRr~~~Ea~Vy~fTMffS~fYHACD~g----~~Cim~ydvLQf~DF~gSimSiwv  653 (838)
                      .+...|+++||+||++|+|+|++|+|||+++|++||+|||++|+||||||++    .+|++++++||++||+++++++|+
T Consensus         2 ~~~~~~~l~l~lSnl~~lP~i~~a~rr~~~~Ea~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~~~v   81 (186)
T PF12036_consen    2 FEQLLQFLLLTLSNLAFLPTIYVAVRRRYHFEAFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLSIWV   81 (186)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999964    499999999999999999999999


Q ss_pred             HHHhhccchhHHHhhhhhhhHHHHHHHHHhhccCC--ccchhhHHHHHHHHHHHHHhhhcccccceeeeccccccccchh
Q 003218          654 TFIYLTTIDEALKRTIHTVVAILTAMMAITKATRS--SNIILVISIGAAGLLIGLLVELSTKFRSFSLRFGFCMNMVDRQ  731 (838)
Q Consensus       654 T~I~MA~~~e~lk~~~~~~~~IL~Al~~~~q~~R~--wnil~PI~i~~l~ili~Wl~~~~t~~R~~~~s~~~~~~yP~~~  731 (838)
                      |+++||++++++|+.+++++++++++.  .|.||+  ||+++|+++++++++++|++|++  +|+.+        ||+++
T Consensus        82 tl~~~a~~~~~~~~~l~~~~~~~~ai~--~~~~~~~~~~~~~Pi~~~~~i~~~~w~~r~~--~~~~~--------~~~~~  149 (186)
T PF12036_consen   82 TLCAMARLDEPLKSVLHYFGALVIAIF--QQKDRWSLWNTIGPILIGLLILLVSWLYRCR--RRRRC--------YPPSW  149 (186)
T ss_pred             HHHHhccCCHHHHHHHHHHHHHHHHHH--HhhCcccchhhHHHHHHHHHHHHHHHheecc--cCCcc--------CChHH
Confidence            999999999999999999999998877  444544  69999999999999999999865  34434        78876


Q ss_pred             HHHHHHHHHhHHhhhhcccchhhhHHHHHHHHHHhhhhcccCcceeEehhHHHH
Q 003218          732 QTIMEWLRNFMKTILRRFRWGFVLVGFAALAMAAISWKLETSQSYWIWHSIWHV  785 (838)
Q Consensus       732 ~~i~~w~~~~~~~l~rrfRw~f~L~Ggi~la~~aI~~flET~dnY~y~HSiWHi  785 (838)
                      +                 ||++++.||+++++.|+.+|+||+|||||+||+||+
T Consensus       150 ~-----------------~~~~~l~~g~~~~~~Gl~~f~et~dnY~~~HSlWHi  186 (186)
T PF12036_consen  150 R-----------------RWLFYLLPGIIFFILGLDLFLETNDNYRIVHSLWHI  186 (186)
T ss_pred             H-----------------HHHHHHHHHHHHHHHHHhHhhcCCCcEEEEeeeeeC
Confidence            5                 899999999999999999999999999999999996

This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.

>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases	Back alignment and domain information

>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum []	Back alignment and domain information

>TIGR01065 hlyIII channel protein, hemolysin III family	Back alignment and domain information

>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species	Back alignment and domain information

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins	Back alignment and domain information

>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins	Back alignment and domain information

>PRK15087 hemolysin; Provisional	Back alignment and domain information

>KOG2970 consensus Predicted membrane protein [Function unknown]	Back alignment and domain information

>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]	Back alignment and domain information

>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1	Back alignment and domain information

>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]	Back alignment and domain information

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Back alignment and domain information

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins	Back alignment and domain information

>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PHA02887 EGF-like protein; Provisional	Back alignment and domain information

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins	Back alignment and domain information

>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species	Back alignment and domain information

>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]	Back alignment and domain information

>smart00179 EGF_CA Calcium-binding EGF-like domain	Back alignment and domain information

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A	Back alignment and domain information

>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		838
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 77/544 (14%), Positives = 148/544 (27%), Gaps = 181/544 (33%)

Query: 107 LPQVTNAFVKGL----VLGSFSNG-SSNELEDI----QNEEQCYPM-------QKNISVK 150
           L    +AFV       V     +  S  E++ I            +       Q+ +  K
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 151 LTNEQISPGAWYLGFFNGVGAIRTQSKMIIRGPSYSFTANISVEGCTTSTMWGQYCNQSV 210
              E +     Y  F   +  I+T+     R PS      I         ++    NQ  
Sbjct: 82  FVEEVLRIN--Y-KFL--MSPIKTEQ----RQPSMMTRMYIE----QRDRLYND--NQVF 126

Query: 211 DPLSCVRSDSYN-----LTEQFPDSKL-------NNKTTENGIFCRNSFDSPCHGNGEIK 258
              +  R   Y      L E  P   +       + KT      C            + K
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL---SYKVQCKMDFK 183

Query: 259 VFFLDV--LGIAEQLIIMAMNVTFSMTQSNNTLNAGGANIVCFARHGAMPSEILHDYSGD 316
           +F+L++      E ++ M   + + +  +  + +   +NI        +    +      
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-------KLRIHSIQAELRR 236

Query: 317 I------SNGPLIVDSPKVGRWYITII-PVNLS-KELGETRNAGI--------QVCYSLE 360
           +       N  L++ +  V           NLS K L  TR   +            SL+
Sbjct: 237 LLKSKPYENCLLVLLN--V--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 361 W---------------QVLEC-------------PMGKAGL-------NCKWERYI---- 381
                           + L+C             P   + +          W+ +     
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 382 --LQTVIR------KETLFESYY-----IPVSEKVPSDSAAFPLEPLLSNSSYDE----- 423
             L T+I       +   +   +      P S  +P+      L  +  +    +     
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----LSLIWFDVIKSDVMVVV 408

Query: 424 ----------GQDNTWTYFLLDIPRGAAGGSIHIQLTSDTKIKH----EIYAKSGGLP-- 467
                      Q    T  +  I        + ++L ++  + H    + Y         
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYL-----ELKVKLENEYAL-HRSIVDHYNIPKTFDSD 462

Query: 468 --SLQSWD-YYY-------ANRTNNSVGSMFFKLYNSSEEKVDFYILYVREGTWGFGIRH 517
                  D Y+Y        N  +    ++F  ++      +DF  L  +       IRH
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF------LDFRFLEQK-------IRH 509

Query: 518 VNTS 521
            +T+
Sbjct: 510 DSTA 513

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		838
2e26_A		725	Reelin, reeler protein; signaling protein; HET: NA	95.84
2ddu_A		387	Reelin; beta-jelly-roll, signaling protein; 2.05A	95.12
2e26_A		725	Reelin, reeler protein; signaling protein; HET: NA	94.94
2ygo_A		188	WIF-1, WNT inhibitory factor 1; signaling protein,	94.8
1k36_A		46	Epiregulin; EGF-like fold, hormone/growth factor c	88.94
1a3p_A		45	Epidermal growth factor; disulfide connectivities,	88.45
1egf_A		53	Epidermal growth factor; NMR {Mus musculus} SCOP:	87.69
1edm_B		39	Factor IX; epidermal growth factor, EGF, calcium-	87.62
3e50_C		50	Protransforming growth factor alpha; IDE, TGF-alph	85.94
2rnl_A		50	Amphiregulin; AR, colorectum cell-derived growth f	85.61
1xdt_R		79	Hbegf, heparin-binding epidermal growth factor; co	85.58
3u7u_G		55	Neuregulin 1; signaling protein, transferase-trans	84.69
1hae_A		63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	83.56
1aut_L		114	Activated protein C; serine proteinase, plasma cal	81.36
2k2s_B		61	Micronemal protein 6; microneme protein complex, c	80.03

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*	Back alignment and structure

Probab=95.84  E-value=0.0042  Score=72.87  Aligned_cols=60  Identities=25%  Similarity=0.614  Sum_probs=41.6

Q ss_pred             EEeeccCC-------cEEEEEEeeeCCCceE---EEEEEe-cccccCCCCCceeeeeeccCCceEEeeeeeCCCCCCcCC
Q 003218          502 YILYVREG-------TWGFGIRHVNTSKSET---VMSVSL-ERCPKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDC  570 (838)
Q Consensus       502 ~IpYPqtG-------tWYLsL~~~n~~~~~v---~~svsl-s~C~~~Cg~~G~C~ll~~~sG~~~ys~C~C~~Gy~GwdC  570 (838)
                      .||+|+.-       .||.++  ++++...+   +-.+++ ..||..|++||+|..     |.    .|+|++||.|.+|
T Consensus       147 ~~~~~~~~~~~~~rfrw~~~~--~~~~~~~~~~~~~~~~ig~~C~~~C~g~G~C~~-----~~----~C~C~~g~~g~~C  215 (725)
T 2e26_A          147 VVHFGKLHLCGSVRFRWYQGF--YPAGSQPVTWAIDNVYIGPQCEEMCYGHGSCIN-----GT----KCICDPGYSGPTC  215 (725)
T ss_dssp             EEESTTTTCCEEEEEEEEEEE--ECTTCCCCCEEEEEEEEEECCGGGGGGSEEEET-----TT----EEEECTTEESTTS
T ss_pred             EEeCCcccCCCceEEEEeccc--ccCCccccceEEeeEEecCCCccccCCCcEecC-----CC----eeeccCCcccCcc
Confidence            56655544       477766  66543221   112222 689999999999964     43    8999999999999


Q ss_pred             Cc
Q 003218          571 SV  572 (838)
Q Consensus       571 td  572 (838)
                      +.
T Consensus       216 ~~  217 (725)
T 2e26_A          216 KI  217 (725)
T ss_dssp             CE
T ss_pred             cc
Confidence            85

PyMOL of 2e26

>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}	Back alignment and structure

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*	Back alignment and structure

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*	Back alignment and structure

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A	Back alignment and structure

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1	Back alignment and structure

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A	Back alignment and structure

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A	Back alignment and structure

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A	Back alignment and structure

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}	Back alignment and structure

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1	Back alignment and structure

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}	Back alignment and structure

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A	Back alignment and structure

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*	Back alignment and structure

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		838
d1g1ta2		39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	94.34
d1jv2b4		31	Integrin beta EGF-like domains {Human (Homo sapien	93.18
d2vj3a2		39	Neurogenic locus notch homolog protein 1, Notch1 {	92.73
d1edmb_		39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	92.57
d1k36a_		46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	92.35
d1tpga1		41	Plasminogen activator (tissue-type), t-PA {Human (	92.33
d2vj3a1		42	Neurogenic locus notch homolog protein 1, Notch1 {	92.07
d1g1sa2		40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	91.75
d1l3ya_		41	Integrin beta EGF-like domains {Human (Homo sapien	90.89
d1autl1		48	Activated protein c (autoprothrombin IIa) {Human (	90.04
d1xkba1		39	Factor X, N-terminal module {Human (Homo sapiens)	89.52
d2vj3a3		35	Neurogenic locus notch homolog protein 1, Notch1 {	89.4
d2c4fl1		37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	88.18
d3egfa_		53	Epidermal growth factor, EGF {Mouse (Mus musculus)	87.73
d1xdtr_		41	Heparin-binding epidermal growth factor, HBEGF {Hu	87.42
d1haea_		63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	86.21
d1q4ga2		42	Prostaglandin H2 synthase-1, EGF-like module {Shee	85.56
d1nqlb_		48	Epidermal growth factor, EGF {Human (Homo sapiens)	85.54
d1cvua2		41	Prostaglandin H2 synthase-1, EGF-like module {Mous	82.76
d1jv2b5		43	Integrin beta EGF-like domains {Human (Homo sapien	81.12

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.0067  Score=44.86  Aligned_cols=36  Identities=31%  Similarity=0.805  Sum_probs=28.8

Q ss_pred             ccc-ccCCCCCceeeeeeccCCceEEeeeeeCCCCCCcCCCcc
Q 003218          532 ERC-PKRCSSHGQCRNAFDASGLTLYSFCACDRDHGGFDCSVE  573 (838)
Q Consensus       532 s~C-~~~Cg~~G~C~ll~~~sG~~~ys~C~C~~Gy~GwdCtd~  573 (838)
                      ++| ++.|.++|.|....   |+|   .|.|.+||.|..|.++
T Consensus         2 ~~C~~~pC~ngg~C~~~~---~~~---~C~C~~g~~G~~Ce~~   38 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETI---NNY---TCKCDPGFSGLKCEQI   38 (39)
T ss_dssp             CCCCTTGGGGSEEEEEET---TEE---EEEECTTEESTTSCEE
T ss_pred             CcccCCcCCCCcEEECCC---CCE---EEeCCCCCcCcCcCcc
Confidence            467 48899999999753   334   7999999999999753

PyMOL of d1g1ta2

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}	Back information, alignment and structure

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure