Citrus Sinensis ID: 003224

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------84

MLGLAQKNSPFPIFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYGYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

cccccccccccccHHcccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHcccccccccccHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEEEcccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHHccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEcccccEEEEEEccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEcccccccccEEEEEEccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHcccccEEEEccEEEccccccccccEEEEEc

cHHHHcccccccHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHccccccccEEEccHHHcEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHcccHHHHHHHEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccEEEEcccccccccEcEEEEccccccEEEEEEcHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccEEcccccEEEcccccccEEEEEEEEcccccEEEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHccccccccccccccEEEEccccccccHHHcccccccEEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEcccccEEEEcccHHHHHHHHHHccccEEEEEccEEEccccEcccccEEEEEc

mlglaqknspfpiffckfrrnrpkfsclLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGAclstkvdflwpkleeqpgtfivdgvdvtgypifndEQVQKAIAFAKRahhgqfrktgdpylthciHTGRILAMlipssgkravDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRrinvnqgtlgheeaNDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAsmwsprnrvgysrrittivssppldertasddesftTFDEHVLSMKDLLEAvvpfdilsDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIStsygyipgmEVTLSSRLKSLYSIFSKmrrkdvgihkvydARALRVVvgdkngtlhgpaiQCCYSLLDIVHrlwipidgefddyivnpkpsgyqslhtavqgpdgsalEVQIRTQKMHEYAEHGLAAHWLYKetgnklqsissmdesdieassslskdtddhnpldtdlfqkysslkmghpvirveGSNLLAAVIIRVEKGGRELLVAVSFGLAASevvadrrpsfqiKCWEAYARLYKKasdewwcqpghgdwctclekytlcrdgmyhkqdqfgrlLPTFIQITHLTEEEESEYWAVVSAVFegkpvdsvvsrrssdsvaptsmeaSINNKVRLLRTMLRWEEQLRSEASLRQSklggkangnpdsvvpgevvivcwpngeimrlrsgstaADAAMKVGLEGKLVLVNgqlvlpntelkdgdivevrv

mlglaqknspfpiFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRrinvnqgtlgheeaNDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAsmwsprnrvgysrrittivssppldertasdDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDlaksseaqkkaKVVQDAGIALTSLVACEEALEKELLISTSYGYIPGMEVTLSSRLKSLYSIFSkmrrkdvgihkvydARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSslskdtddhnpLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGlaasevvadrrpsfQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFegkpvdsvvsrrssdsvaptsmeasinnkVRLLRTMLRWEEQLRSEASLrqsklggkangnpdsvvpGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGqlvlpntelkdgdivevrv

MLGLAQKNSPFPIFFCKFRRNRPKFSCLLDHanviaaaaaagkahgavtsaithvavtavaiasGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYGYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPvdsvvsrrssdsvAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

**********FPIFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV****************TTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLH************KVVQDAGIALTSLVACEEALEKELLISTSYGYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA*******ALEVQIRTQKMHEYAEHGLAAHWLYKE***********************************LFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK**************************VRLLRTMLRW*************************VVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTEL**********

*********P***FFCKFRRN*P******************************************************KLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR***************ANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYGYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE***************I**********DDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAA***********Q**CWEAYARLYKKA****WCQPGHGDWCTCLEKYTLCRDGMYHK**********************SEYWAVVSAVFE****************************************************************VPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

MLGLAQKNSPFPIFFCKFRRNRPKFSCLLDHANVIAAA*********VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSS**********DAGIALTSLVACEEALEKELLISTSYGYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS********************DHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVD***************MEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

MLGLAQKNSPFPIFFCKFRRNRPKFSCLLDHANVIAAAAAAGKAHGAVTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYGYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEG*********************ASINNKVRLLRTMLRWEEQLRSEASL**SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		838	2.2.26 [Sep-21-2011]
Q49640		787	Probable GTP pyrophosphok	yes	no	0.215	0.229	0.420	9e-35
P74007		760	Probable guanosine-3',5'-	N/A	no	0.210	0.231	0.424	3e-33
O67012		696	Guanosine-3',5'-bis(dipho	yes	no	0.210	0.252	0.372	8e-33
P66015		790	Probable GTP pyrophosphok	yes	no	0.215	0.229	0.405	1e-32
P66014		738	Bifunctional (p)ppGpp syn	yes	no	0.215	0.245	0.405	1e-32
P43811		677	Guanosine-3',5'-bis(dipho	yes	no	0.204	0.252	0.409	2e-32
O52177		757	GTP pyrophosphokinase OS=	yes	no	0.226	0.250	0.384	5e-32
P0AG26		702	Guanosine-3',5'-bis(dipho	yes	no	0.213	0.254	0.403	6e-32
P0AG24		702	Bifunctional (p)ppGpp syn	N/A	no	0.213	0.254	0.403	6e-32
P0AG25		702	Guanosine-3',5'-bis(dipho	N/A	no	0.213	0.254	0.403	6e-32

>sp\|Q49640\|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN) GN=relA PE=3 SV=1	Back alignment and function desciption

 Score =  149 bits (376), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 117/202 (57%), Gaps = 21/202 (10%)

Query: 96  YPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAG 155
           YP  N   VQ+A   A + H  Q R++GDPY+TH +    ILA L        + T+VA 
Sbjct: 72  YPKANLSIVQRAFEVADQRHASQLRRSGDPYITHPLAVANILAEL-----GMDITTLVAA 126

Query: 156 ILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHE-EA 214
           +LHD V+D   +L ++ EEFGDEV  LV GV++L  +                LG   E 
Sbjct: 127 LLHDTVEDTGYTLEALSEEFGDEVGHLVDGVTKLDRV---------------VLGSAAEG 171

Query: 215 NDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLW 274
             +R M+  M  DPRV++IK+ADRLHNMRT+  LPP K    A+ETL +   LA RLG+ 
Sbjct: 172 ETIRKMITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMA 231

Query: 275 ALKAELEDLCFAVLQPQIFRKM 296
           ++K ELEDL FA+L P+ + ++
Sbjct: 232 SVKWELEDLSFAILHPKKYEEI 253

In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which is then hydrolyzed to form ppGpp.
Mycobacterium leprae (taxid: 1769)
EC: 2EC: .EC: 7EC: .EC: 6EC: .EC: 5

>sp\|P74007\|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1	Back alignment and function description

>sp\|O67012\|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex aeolicus (strain VF5) GN=spoT PE=3 SV=1	Back alignment and function description

>sp\|P66015\|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=relA PE=3 SV=1	Back alignment and function description

>sp\|P66014\|RELA_MYCTU Bifunctional (p)ppGpp synthase/hydrolase relA OS=Mycobacterium tuberculosis GN=relA PE=1 SV=2	Back alignment and function description

>sp\|P43811\|SPOT_HAEIN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=spoT PE=3 SV=1	Back alignment and function description

>sp\|O52177\|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1	Back alignment and function description

>sp\|P0AG26\|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Shigella flexneri GN=spoT PE=3 SV=1	Back alignment and function description

>sp\|P0AG24\|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli (strain K12) GN=spoT PE=1 SV=1	Back alignment and function description

>sp\|P0AG25\|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		838
297737338		868	unnamed protein product [Vitis vinifera]	0.941	0.908	0.784	0.0
357481159		889	GTP pyrophosphokinase [Medicago truncatu	0.991	0.934	0.705	0.0
449483240		875	PREDICTED: uncharacterized LOC101208449	0.941	0.901	0.750	0.0
255557973		806	guanosine-3',5'-bis(diphosphate) 3'-pyro	0.924	0.961	0.716	0.0
225454821		816	PREDICTED: uncharacterized protein LOC10	0.872	0.895	0.729	0.0
356495744		782	PREDICTED: uncharacterized protein LOC10	0.918	0.984	0.701	0.0
356538795		793	PREDICTED: uncharacterized protein LOC10	0.917	0.969	0.695	0.0
449439043		706	PREDICTED: uncharacterized protein LOC10	0.819	0.973	0.738	0.0
242066290		878	hypothetical protein SORBIDRAFT_04g03090	0.933	0.890	0.654	0.0
413923562		877	hypothetical protein ZEAMMB73_341215 [Ze	0.931	0.890	0.648	0.0

>gi\|297737338\|emb\|CBI26539.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1288 bits (3332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/803 (78%), Positives = 699/803 (87%), Gaps = 14/803 (1%)

Query: 48  VTSAITHVAVTAVAIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFNDEQVQKA 107
           V SAIT VAVTAVAIASGACLSTKVDFLWPK EE PG+ I+DGVDVTGY IFND +VQKA
Sbjct: 68  VASAITQVAVTAVAIASGACLSTKVDFLWPKAEELPGSLILDGVDVTGYHIFNDAKVQKA 127

Query: 108 IAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACES 167
           IAFA++AHHGQ RKTGDPYLTHCIHTGRILA+L+PSSGKRA+DTVVAGILHDVVDD CES
Sbjct: 128 IAFARKAHHGQLRKTGDPYLTHCIHTGRILAVLVPSSGKRAIDTVVAGILHDVVDDTCES 187

Query: 168 LGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDD 227
           L S+EEEFGD+VAKLVAGVSRLSYINQLLRRHRRINVNQG LGHEEAN+LRVMLLGMVDD
Sbjct: 188 LHSVEEEFGDDVAKLVAGVSRLSYINQLLRRHRRINVNQGILGHEEANNLRVMLLGMVDD 247

Query: 228 PRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 287
           PRVVLIKLADRLHNMRTIYALP  KA+AVAQETLLIWCSLASRLGLWALKAELEDLCFAV
Sbjct: 248 PRVVLIKLADRLHNMRTIYALPLPKAQAVAQETLLIWCSLASRLGLWALKAELEDLCFAV 307

Query: 288 LQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSP-PLDER-TASDDESFTTFDEHVLS 345
           LQPQ F +MRADLASMWSP NR G  RR     SSP PL+E+  A D E     D  V S
Sbjct: 308 LQPQTFLQMRADLASMWSPSNRSGNPRRTAAKDSSPVPLNEKEIAFDYEGSLAVDADVTS 367

Query: 346 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 405
           MKDLLEAV+PFDIL DRRKR  FL++L K S+ QKK +VV+DAG+AL SLV CEEALE+E
Sbjct: 368 MKDLLEAVLPFDILLDRRKRINFLNNLGKCSKTQKKPQVVRDAGLALASLVLCEEALERE 427

Query: 406 LLISTSYGYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 465
           LLISTSY  +PGMEVTLSSRLKSLYSI+SKM+RKDVGI+K+YDARALRVVVGDKNGTL G
Sbjct: 428 LLISTSY--VPGMEVTLSSRLKSLYSIYSKMKRKDVGINKIYDARALRVVVGDKNGTLCG 485

Query: 466 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 525
           PA+QCCY+LL I+HRLW PIDGEFDDYIVNPKPSGYQSLHTAVQGPD S LEVQIRTQ+M
Sbjct: 486 PAVQCCYNLLSIIHRLWTPIDGEFDDYIVNPKPSGYQSLHTAVQGPDNSPLEVQIRTQRM 545

Query: 526 HEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLK 585
           HEYAEHGLAAHWLYKET NKL S S +D+S+I+ASS  S+D ++ N +  D+FQKY SLK
Sbjct: 546 HEYAEHGLAAHWLYKETENKLPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLK 605

Query: 586 MGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARL 645
            GHPV+RVEGS+LLAAV++RV+K GRELLVAVSFGL ASE VADRR SFQIK WEAYARL
Sbjct: 606 AGHPVLRVEGSHLLAAVVVRVDKDGRELLVAVSFGLVASEAVADRRSSFQIKRWEAYARL 665

Query: 646 YKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYW 705
           YKK SDEWW +PGHGDWCTCLEKYTLCRDGMYHK+DQF RLLPTFIQ+  LTE+EESEYW
Sbjct: 666 YKKVSDEWWFEPGHGDWCTCLEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYW 725

Query: 706 AVVSAVFEGKPVDSVVS--------RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRS 757
           AVVSA+FEGK + S+ S        R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRS
Sbjct: 726 AVVSAIFEGKQIASIESHSNSSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRS 785

Query: 758 EASLRQ--SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLV 815
           EA +RQ  +K+G      P SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLV
Sbjct: 786 EAGMRQTKTKVGADPYSTPKSVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLV 845

Query: 816 LVNGQLVLPNTELKDGDIVEVRV 838
           LVNGQ VLPNT+LKDGD+VEVR+
Sbjct: 846 LVNGQYVLPNTQLKDGDVVEVRM 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357481159\|ref\|XP_003610865.1\| GTP pyrophosphokinase [Medicago truncatula] gi\|355512200\|gb\|AES93823.1\| GTP pyrophosphokinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449483240\|ref\|XP_004156531.1\| PREDICTED: uncharacterized LOC101208449 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255557973\|ref\|XP_002520015.1\| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] gi\|223540779\|gb\|EEF42339.1\| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225454821\|ref\|XP_002274363.1\| PREDICTED: uncharacterized protein LOC100247726 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356495744\|ref\|XP_003516733.1\| PREDICTED: uncharacterized protein LOC100795418 [Glycine max]	Back alignment and taxonomy information

>gi\|356538795\|ref\|XP_003537886.1\| PREDICTED: uncharacterized protein LOC100799181 [Glycine max]	Back alignment and taxonomy information

>gi\|449439043\|ref\|XP_004137297.1\| PREDICTED: uncharacterized protein LOC101208449 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|242066290\|ref\|XP_002454434.1\| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor] gi\|241934265\|gb\|EES07410.1\| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|413923562\|gb\|AFW63494.1\| hypothetical protein ZEAMMB73_341215 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		838
TIGR_CMR\|DET_0005		728	DET_0005 "GTP pyrophosphokinas	0.249	0.287	0.416	4e-64
TAIR\|locus:2014335		715	RSH3 "RELA/SPOT homolog 3" [Ar	0.225	0.264	0.492	8.2e-60
TAIR\|locus:2088262		709	RSH2 "RELA/SPOT homolog 2" [Ar	0.225	0.266	0.477	1.1e-59
UNIPROTKB\|Q3A9Z8		716	relA "GTP pyrophosphokinase" [	0.139	0.163	0.484	4.4e-55
TIGR_CMR\|CHY_2223		716	CHY_2223 "GTP pyrophosphokinas	0.139	0.163	0.484	4.4e-55
TIGR_CMR\|GSU_2236		716	GSU_2236 "GTP pyrophosphokinas	0.212	0.248	0.381	1e-53
TIGR_CMR\|BA_4637		727	BA_4637 "GTP pyrophosphokinase	0.146	0.169	0.458	7.7e-51
UNIPROTKB\|Q4K899		747	relA "GTP diphosphokinase" [Ps	0.143	0.160	0.527	2.5e-49
TIGR_CMR\|CJE_1408		731	CJE_1408 "RelA/SpoT family pro	0.221	0.254	0.348	3.2e-49
TAIR\|locus:2137869		884	RSH1 "RELA/SPOT homolog 1" [Ar	0.236	0.223	0.368	7.1e-49

TIGR_CMR\|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

 Score = 371 (135.7 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
 Identities = 92/221 (41%), Positives = 132/221 (59%)

Query:   104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163
             +++A  +A  AH GQ RK+G+P++ H ++    LA L   S      T+ A +LHDV +D
Sbjct:    22 LEEAYNYAAAAHTGQMRKSGEPFIEHPLNVAITLADLQLDSA-----TLAAALLHDVPED 76

Query:   164 ACESLGSIEEEFGDEVAKLVAGVSRLSYI--NQLLRRHRRINVNQGTLGHEEANDLRVML 221
             A  SL  IE++FG +VAKLV GV++LS +     +   RR     G     +A +LR ML
Sbjct:    77 AHISLEQIEKKFGADVAKLVDGVTKLSKLALGPGIEDARRPG---GNASLRQAENLRKML 133

Query:   222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
             + M +D RVV IKLADR HNMRT+ AL   K R++A+ET+ I+  LA RLG+W LK +LE
Sbjct:   134 VAMSEDLRVVFIKLADRFHNMRTLQALSAEKRRSIAKETMEIYAPLAHRLGIWELKWQLE 193

Query:   282 DLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 322
             DL F  L P+ +R++ A+L        R  Y   ++ I+ S
Sbjct:   194 DLAFRYLDPRHYRQV-ANLVDS-KLAQRKNYIEHVSAILQS 232

GO:0008728 "GTP diphosphokinase activity" evidence=ISS

GO:0015968 "stringent response" evidence=ISS

TAIR\|locus:2014335 RSH3 "RELA/SPOT homolog 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2088262 RSH2 "RELA/SPOT homolog 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4K899 relA "GTP diphosphokinase" [Pseudomonas protegens Pf-5 (taxid:220664)]	Back alignment and assigned GO terms

TIGR_CMR\|CJE_1408 CJE_1408 "RelA/SpoT family protein" [Campylobacter jejuni RM1221 (taxid:195099)]	Back alignment and assigned GO terms

TAIR\|locus:2137869 RSH1 "RELA/SPOT homolog 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.6	LOW CONFIDENCE prediction!
4th Layer	2.7.6.5	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		838
COG0317		701	COG0317, SpoT, Guanosine polyphosphate pyrophospho	3e-56
pfam13328		156	pfam13328, HD_4, HD domain	8e-52
TIGR00691		683	TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp	1e-49
COG0317		701	COG0317, SpoT, Guanosine polyphosphate pyrophospho	4e-48
smart00954		111	smart00954, RelA_SpoT, Region found in RelA / SpoT	2e-44
PRK11092		702	PRK11092, PRK11092, bifunctional (p)ppGpp syntheta	3e-41
TIGR00691		683	TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp	5e-41
pfam04607		116	pfam04607, RelA_SpoT, Region found in RelA / SpoT	6e-40
PRK10872		743	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos	2e-34
PRK11092		702	PRK11092, PRK11092, bifunctional (p)ppGpp syntheta	6e-31
cd05399		129	cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (	5e-28
PRK10872		743	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos	9e-20
COG2357		231	COG2357, COG2357, PpGpp synthetase catalytic domai	3e-11
cd01668		60	cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (S	1e-08
pfam02824		60	pfam02824, TGS, TGS domain	2e-07
cd00077		145	cd00077, HDc, Metal dependent phosphohydrolases wi	1e-05
cd01616		60	cd01616, TGS, The TGS domain, named after the ThrR	3e-05
smart00471		124	smart00471, HDc, Metal dependent phosphohydrolases	4e-05
pfam01966		111	pfam01966, HD, HD domain	5e-05
COG2104		68	COG2104, ThiS, Sulfur transfer protein involved in	3e-04

>gnl\|CDD\|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

 Score =  205 bits (524), Expect = 3e-56
 Identities = 87/195 (44%), Positives = 119/195 (61%), Gaps = 16/195 (8%)

Query: 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160
           D +++KA  +A++AH GQ RK+G+PY++H +    ILA L        ++T+ A +LHD 
Sbjct: 24  DIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAEL-----HMDMETLAAALLHDT 78

Query: 161 VDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVM 220
           ++D   +   IEE FG EVAKLV GV++L  I QL                 +A +LR M
Sbjct: 79  IEDTPVTEELIEEIFGKEVAKLVEGVTKLKKIGQLSSEEEL-----------QAENLRKM 127

Query: 221 LLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAEL 280
           LL MV D RVVLIKLADRLHN+RT+  L   K R +A+ETL I+  LA RLG+  +K EL
Sbjct: 128 LLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGIGQIKWEL 187

Query: 281 EDLCFAVLQPQIFRK 295
           EDL F  L P  +++
Sbjct: 188 EDLSFRYLHPDQYKR 202

Length = 701

>gnl\|CDD\|222047 pfam13328, HD_4, HD domain	Back alignment and domain information

>gnl\|CDD\|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>gnl\|CDD\|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>gnl\|CDD\|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins	Back alignment and domain information

>gnl\|CDD\|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>gnl\|CDD\|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>gnl\|CDD\|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins	Back alignment and domain information

>gnl\|CDD\|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>gnl\|CDD\|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases	Back alignment and domain information

>gnl\|CDD\|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response	Back alignment and domain information

>gnl\|CDD\|217243 pfam02824, TGS, TGS domain	Back alignment and domain information

>gnl\|CDD\|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>gnl\|CDD\|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin	Back alignment and domain information

>gnl\|CDD\|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>gnl\|CDD\|216815 pfam01966, HD, HD domain	Back alignment and domain information

>gnl\|CDD\|225015 COG2104, ThiS, Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		838
COG0317		701	SpoT Guanosine polyphosphate pyrophosphohydrolases	100.0
PRK10872		743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	100.0
PRK11092		702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	100.0
TIGR00691		683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	100.0
KOG1157		543	consensus Predicted guanosine polyphosphate pyroph	100.0
PF13328		153	HD_4: HD domain; PDB: 3NR1_B.	100.0
PF04607		115	RelA_SpoT: Region found in RelA / SpoT proteins; I	99.95
cd05399		129	NT_Rel-Spo_like Nucleotidyltransferase (NT) domain	99.94
COG0317		701	SpoT Guanosine polyphosphate pyrophosphohydrolases	99.94
COG2357		231	PpGpp synthetase catalytic domain [General functio	99.92
PRK11092		702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	99.92
PRK10872		743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	99.9
TIGR00691		683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	99.87
PF02824		60	TGS: TGS domain; InterPro: IPR004095 The TGS domai	99.49
cd01669		76	TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma	98.91
cd01666		75	TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate	98.79
cd01668		60	TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote	98.73
PF02824		60	TGS: TGS domain; InterPro: IPR004095 The TGS domai	98.3
cd01616		60	TGS The TGS domain, named after the ThrRS, GTPase,	98.14
PRK01777		95	hypothetical protein; Validated	97.98
cd04938		76	TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma	97.97
PRK09602		396	translation-associated GTPase; Reviewed	97.95
TIGR03276		179	Phn-HD phosphonate degradation operons associated	97.82
PRK05659		66	sulfur carrier protein ThiS; Validated	97.82
PRK06437		67	hypothetical protein; Provisional	97.57
cd01667		61	TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn	97.56
PRK06944		65	sulfur carrier protein ThiS; Provisional	97.55
cd00565		65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	97.51
PRK07440		70	hypothetical protein; Provisional	97.5
COG2104		68	ThiS Sulfur transfer protein involved in thiamine	97.42
PRK07696		67	sulfur carrier protein ThiS; Provisional	97.37
PRK08364		70	sulfur carrier protein ThiS; Provisional	97.37
TIGR01683		64	thiS thiamine biosynthesis protein ThiS. This mode	97.29
PRK08053		66	sulfur carrier protein ThiS; Provisional	97.15
cd01669		76	TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma	97.03
PF03658		84	Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534	96.9
PF14451		81	Ub-Mut7C: Mut7-C ubiquitin	96.87
PRK06488		65	sulfur carrier protein ThiS; Validated	96.87
cd01666		75	TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate	96.8
PRK05863		65	sulfur carrier protein ThiS; Provisional	96.33
PRK06083		84	sulfur carrier protein ThiS; Provisional	96.28
cd00754		80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	95.93
PLN02799		82	Molybdopterin synthase sulfur carrier subunit	95.89
cd01668		60	TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote	95.4
PTZ00258		390	GTP-binding protein; Provisional	95.1
PF02597		77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	95.08
COG2914		99	Uncharacterized protein conserved in bacteria [Fun	94.82
COG1163		365	DRG Predicted GTPase [General function prediction	94.8
PRK14707		2710	hypothetical protein; Provisional	94.66
TIGR01682		80	moaD molybdopterin converting factor, subunit 1, n	93.83
PLN02908		686	threonyl-tRNA synthetase	93.37
PRK12444		639	threonyl-tRNA synthetase; Reviewed	92.71
cd01616		60	TGS The TGS domain, named after the ThrRS, GTPase,	91.95
TIGR03401		228	cyanamide_fam HD domain protein, cyanamide hydrata	90.1
TIGR01687		88	moaD_arch MoaD family protein, archaeal. Members o	89.34
PRK01777		95	hypothetical protein; Validated	88.97
PF01966		122	HD: HD domain; InterPro: IPR006674 This domain is	88.87
PRK14707		2710	hypothetical protein; Provisional	88.69
TIGR02988		59	YaaA_near_RecF S4 domain protein YaaA. This small	88.65
PRK09602		396	translation-associated GTPase; Reviewed	88.64
PRK12703		339	tRNA 2'-O-methylase; Reviewed	88.48
PRK11130		81	moaD molybdopterin synthase small subunit; Provisi	88.21
PF01479		48	S4: S4 domain; InterPro: IPR002942 Ribosomes are t	87.15
PRK09169		2316	hypothetical protein; Validated	86.97
PRK09601		364	GTP-binding protein YchF; Reviewed	86.92
PRK05659		66	sulfur carrier protein ThiS; Validated	85.87
PF14453		57	ThiS-like: ThiS-like ubiquitin	85.01
cd01764		94	Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Rel	83.95
cd01667		61	TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn	83.38
PRK00413		638	thrS threonyl-tRNA synthetase; Reviewed	83.25
smart00363		60	S4 S4 RNA-binding domain.	82.24
COG2104		68	ThiS Sulfur transfer protein involved in thiamine	80.87

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

Probab=100.00  E-value=9.9e-130  Score=1127.27  Aligned_cols=464  Identities=39%  Similarity=0.620  Sum_probs=421.4

Q ss_pred             cCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHH
Q 003224           94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE  173 (838)
Q Consensus        94 ~~y~~~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~  173 (838)
                      ..|.......+.+|+.||.++|.+|+|+||+|||.||++||.||+++.+     |.++++||||||++|||++|.++|++
T Consensus        17 ~~~~~~~~~~l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~-----d~~tl~AaLLHD~vEDt~~t~e~i~~   91 (701)
T COG0317          17 ATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHM-----DMETLAAALLHDTIEDTPVTEELIEE   91 (701)
T ss_pred             HhcCChHHHHHHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccC-----CHHHHHHHHccchHhcCCCCHHHHHH
Confidence            4444444555999999999999999999999999999999999999985     78999999999999999999999999


Q ss_pred             HhcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHHH
Q 003224          174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA  253 (838)
Q Consensus       174 ~FG~eVA~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq  253 (838)
                      .||++|++||+||||+..+..+.           .....|+||+|||++||++|+||++|||||||||||||..++++||
T Consensus        92 ~FG~eVa~LV~GvTkl~~i~~~~-----------~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~  160 (701)
T COG0317          92 IFGKEVAKLVEGVTKLKKIGQLS-----------SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKR  160 (701)
T ss_pred             HHCHHHHHHHhhHHHhhhhhccC-----------ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHH
Confidence            99999999999999999874211           1223489999999999999999999999999999999999889999


Q ss_pred             HHHHHHhHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCcccccccccccccCCCCCccCccCCC
Q 003224          254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD  333 (838)
Q Consensus       254 ~~iA~ETl~IYAPLA~RLGl~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  333 (838)
                      +++|+||++||||||||||||++|||||||||+||+|+.|+.|.+.|.+                               
T Consensus       161 ~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e-------------------------------  209 (701)
T COG0317         161 RRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDE-------------------------------  209 (701)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999999986                               


Q ss_pred             CcccchhhhhhhHHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHhhcccCC
Q 003224          334 ESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYG  413 (838)
Q Consensus       334 ~~~~~~~~~~~~~k~ll~a~~~~d~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~L~~~l~~~~~~~  413 (838)
                                                 +|.+|+.+++++.                      +.+++.|.+         
T Consensus       210 ---------------------------~r~~re~~i~~~~----------------------~~l~~~L~~---------  231 (701)
T COG0317         210 ---------------------------KRLEREQYIENVV----------------------SELREELKA---------  231 (701)
T ss_pred             ---------------------------HHHHHHHHHHHHH----------------------HHHHHHHHH---------
Confidence                                       4889999998876                      244556654         


Q ss_pred             CCCCceEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccc
Q 003224          414 YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYI  493 (838)
Q Consensus       414 ~~~gi~~~I~gR~K~~ySI~~Km~Rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYI  493 (838)
                        .|+.++|+||+||+||||+||++|+..|++|+|++||||||++         +.|||++||+||.+|+|+|+||||||
T Consensus       232 --~gi~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~---------~~dCY~~LGiVH~~~kp~PgrFKDYI  300 (701)
T COG0317         232 --AGIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALGIVHTLWKPIPGEFDDYI  300 (701)
T ss_pred             --cCCeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC---------hHHHHHHHHHHHhcCcCCCCcccccc
Confidence              3788999999999999999999999999999999999999996         88999999999999999999999999


Q ss_pred             cCCCCCCCceeEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhcccccCCccccccccccchHHHhccCCCCCCCCCcc
Q 003224          494 VNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPL  573 (838)
Q Consensus       494 a~PK~NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~  573 (838)
                      |+||+||||||||||.||.|.++||||||..||+.||+|+||||.||+++......-.+-++|.+|++...++.||++++
T Consensus       301 A~PK~NgYQSlHTtv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~~~~~~~~Wlr~lle~q~~~~d~~ef~e~~  380 (701)
T COG0317         301 ANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGSAYEEKIAWLRQLLEWQEESADSGEFLEQL  380 (701)
T ss_pred             ccCCCCCCceeEEEEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCchhhHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987322111123355678888888789999999


Q ss_pred             ccc-------ccccccc---CCCCCceeee-------cCCceeEEEEEEEccCCeeEEEecccccCCCCeEEEcCCC--C
Q 003224          574 DTD-------LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--F  634 (838)
Q Consensus       574 ~~d-------vftpkg~---lp~G~tvl~~-------vG~~c~gAkV~~v~~nGr~~lVpls~~L~~GD~VeI~ts~--~  634 (838)
                      |.|       ||||||+   ||.|+||+||       |||+|+||||     |||  +|||+|+|+|||+|||+|++  +
T Consensus       381 k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkV-----nG~--ivpl~~~Lk~Gd~VEIit~k~~~  453 (701)
T COG0317         381 KSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKV-----NGR--IVPLTTKLQTGDQVEIITSKHAG  453 (701)
T ss_pred             hhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEE-----CCE--EeccceecCCCCEEEEEeCCCCC
Confidence            998       4799994   8999999877       9999999999     999  99999999999999999998  5


Q ss_pred             cchhHHHHHHHhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeecccccccCC
Q 003224          635 QIKCWEAYARLYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLP  688 (838)
Q Consensus       635 p~~dWL~~v~t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~~~~  688 (838)
                      |++|||+||+|+||++| +-||  ...+.+.++++      |+--+...|+++-.
T Consensus       454 Ps~~Wl~~v~t~kAR~kIr~~~--k~~~re~~i~~------G~~lLe~~l~~~g~  500 (701)
T COG0317         454 PSRDWLNFVVTSRARAKIRAWF--KKQDRDENVEA------GRELLEKELSRLGL  500 (701)
T ss_pred             CCHHHHHHHhhHHHHHHHHHHH--HHHHHHhHHHH------HHHHHHHHHHHcCC
Confidence            99999999999999999 7777  89999999999      99999999998765

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]	Back alignment and domain information

>PF13328 HD_4: HD domain; PDB: 3NR1_B	Back alignment and domain information

>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat	Back alignment and domain information

>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases	Back alignment and domain information

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>COG2357 PpGpp synthetase catalytic domain [General function prediction only]	Back alignment and domain information

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []	Back alignment and domain information

>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea	Back alignment and domain information

>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2	Back alignment and domain information

>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response	Back alignment and domain information

>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []	Back alignment and domain information

>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin	Back alignment and domain information

>PRK01777 hypothetical protein; Validated	Back alignment and domain information

>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF	Back alignment and domain information

>PRK09602 translation-associated GTPase; Reviewed	Back alignment and domain information

>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein	Back alignment and domain information

>PRK05659 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>PRK06437 hypothetical protein; Provisional	Back alignment and domain information

>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA	Back alignment and domain information

>PRK06944 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein	Back alignment and domain information

>PRK07440 hypothetical protein; Provisional	Back alignment and domain information

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>PRK07696 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>PRK08364 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>TIGR01683 thiS thiamine biosynthesis protein ThiS	Back alignment and domain information

>PRK08053 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea	Back alignment and domain information

>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function	Back alignment and domain information

>PF14451 Ub-Mut7C: Mut7-C ubiquitin	Back alignment and domain information

>PRK06488 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2	Back alignment and domain information

>PRK05863 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>PRK06083 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins	Back alignment and domain information

>PLN02799 Molybdopterin synthase sulfur carrier subunit	Back alignment and domain information

>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response	Back alignment and domain information

>PTZ00258 GTP-binding protein; Provisional	Back alignment and domain information

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer	Back alignment and domain information

>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG1163 DRG Predicted GTPase [General function prediction only]	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal	Back alignment and domain information

>PLN02908 threonyl-tRNA synthetase	Back alignment and domain information

>PRK12444 threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin	Back alignment and domain information

>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family	Back alignment and domain information

>TIGR01687 moaD_arch MoaD family protein, archaeal	Back alignment and domain information

>PRK01777 hypothetical protein; Validated	Back alignment and domain information

>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02988 YaaA_near_RecF S4 domain protein YaaA	Back alignment and domain information

>PRK09602 translation-associated GTPase; Reviewed	Back alignment and domain information

>PRK12703 tRNA 2'-O-methylase; Reviewed	Back alignment and domain information

>PRK11130 moaD molybdopterin synthase small subunit; Provisional	Back alignment and domain information

>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>PRK09169 hypothetical protein; Validated	Back alignment and domain information

>PRK09601 GTP-binding protein YchF; Reviewed	Back alignment and domain information

>PRK05659 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>PF14453 ThiS-like: ThiS-like ubiquitin	Back alignment and domain information

>cd01764 Urm1 Urm1-like ubuitin domain	Back alignment and domain information

>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA	Back alignment and domain information

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>smart00363 S4 S4 RNA-binding domain	Back alignment and domain information

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		838
1vj7_A		393	Crystal Structure Of The Bifunctional Catalytic Fra		1e-29
1vj7_A		393	Crystal Structure Of The Bifunctional Catalytic Fra		1e-23
3nr1_A		178	A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl		2e-09
3nqw_A		179	A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl		7e-06

>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393

Back alignment and structure

Iteration: 1

Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/195 (41%), Positives = 109/195 (55%), Gaps = 21/195 (10%) Query: 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 V+KA+ +A AH Q RK+G+PY+ H I ILA L + TV G LHDVV+D Sbjct: 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-----TVACGFLHDVVED 82 Query: 164 ACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEE--ANDLRVML 221 +L +IE +FG +V +V GV++L + HEE A + R ML Sbjct: 83 TDITLDNIEFDFGKDVRDIVDGVTKLGKVE--------------YKSHEEQLAENHRKML 128 Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281 + M D RV+L+KLADRLHNMRT+ L K +++ET+ I+ LA RLG+ +K ELE Sbjct: 129 MAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELE 188 Query: 282 DLCFAVLQPQIFRKM 296 DL F L F K+ Sbjct: 189 DLAFRYLNETEFYKI 203

PyMOL of 1vj7

>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393

Back alignment and structure

>pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178

Back alignment and structure

>pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		838
1vj7_A		393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	4e-66
1vj7_A		393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	1e-47
3nqw_A		179	CG11900; stringent response, pyrophosphohydrolase,	2e-50
3nr1_A		178	HD domain-containing protein 3; stringent response	6e-50
2be3_A		226	GTP pyrophosphokinase; structural genomics, PSI, p	1e-39
3l9d_A		255	SMU.1046C, putative GTP pyrophosphokinase; transfe	4e-34
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
2kmm_A		73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	8e-06
3hvz_A		78	Uncharacterized protein; alpha-beta protein, struc	2e-05
1rws_A		77	Hypothetical protein PF1061; residual dipolar coup	3e-04
1f0z_A		66	THis protein; ubiquitin fold, transport protein; N	5e-04

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393	Back alignment and structure

 Score =  224 bits (574), Expect = 4e-66
 Identities = 83/221 (37%), Positives = 114/221 (51%), Gaps = 19/221 (8%)

Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
             V+KA+ +A  AH  Q RK+G+PY+ H I    ILA L          TV  G LHDVV
Sbjct: 26  AFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADL-----HLDAVTVACGFLHDVV 80

Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
           +D   +L +IE +FG +V  +V GV++L              V   +   + A + R ML
Sbjct: 81  EDTDITLDNIEFDFGKDVRDIVDGVTKLG------------KVEYKSHEEQLAENHRKML 128

Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
           + M  D RV+L+KLADRLHNMRT+  L   K   +++ET+ I+  LA RLG+  +K ELE
Sbjct: 129 MAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELE 188

Query: 282 DLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 322
           DL F  L    F K+   +      R R      I T + S
Sbjct: 189 DLAFRYLNETEFYKISHMMNE--KRREREALVDDIVTKIKS 227

PyMOL of 1vj7

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393	Back alignment and structure

>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179	Back alignment and structure

>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178	Back alignment and structure

>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226	Back alignment and structure

>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Length = 73	Back alignment and structure

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Length = 78	Back alignment and structure

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A Length = 77	Back alignment and structure

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Length = 66	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		838
1vj7_A		393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	100.0
3l9d_A		255	SMU.1046C, putative GTP pyrophosphokinase; transfe	100.0
2be3_A		226	GTP pyrophosphokinase; structural genomics, PSI, p	100.0
3nqw_A		179	CG11900; stringent response, pyrophosphohydrolase,	99.98
3nr1_A		178	HD domain-containing protein 3; stringent response	99.97
3hvz_A		78	Uncharacterized protein; alpha-beta protein, struc	99.79
2eki_A		93	DRG 1, developmentally-regulated GTP-binding prote	99.23
2kmm_A		73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	99.04
3hvz_A		78	Uncharacterized protein; alpha-beta protein, struc	98.95
1wwt_A		88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	98.77
1wxq_A		397	GTP-binding protein; structural genomics, riken st	98.61
2eki_A		93	DRG 1, developmentally-regulated GTP-binding prote	97.68
2l32_A		74	Small archaeal modifier protein 2; protein BIN; NM	97.64
2hj1_A		97	Hypothetical protein; structural genomics, PSI, pr	97.62
1rws_A		77	Hypothetical protein PF1061; residual dipolar coup	97.58
2k5p_A		78	THis protein, thiamine-biosynthesis protein; NESG,	97.46
1f0z_A		66	THis protein; ubiquitin fold, transport protein; N	97.41
2kl0_A		73	Putative thiamin biosynthesis THis; structural gen	97.36
1tyg_B		87	YJBS; alpha beta barrel, protein-protein complex,	97.36
2kmm_A		73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	97.33
1ryj_A		70	Unknown; beta/alpha protein, structural genomics,	97.17
2cu3_A		64	Unknown function protein; thermus thermophilus HB8	97.1
1wwt_A		88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	96.98
2q5w_D		77	Molybdopterin converting factor, subunit 1; MOCO,	96.6
1tke_A		224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	96.39
1vjk_A		98	Molybdopterin converting factor, subunit 1; struct	96.14
3po0_A		89	Small archaeal modifier protein 1; ubiquitin-like	96.09
1wxq_A		397	GTP-binding protein; structural genomics, riken st	95.75
1fm0_D		81	Molybdopterin convertin factor, subunit 1; molybde	95.73
4a9a_A		376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	94.88
2g1e_A		90	Hypothetical protein TA0895; MOAD, molybdopterin,	94.83
3rpf_C		74	Molybdopterin converting factor, subunit 1 (MOAD);	93.37
2dby_A		368	GTP-binding protein; GDP, structural genomics, NPP	92.28
3dwg_C		93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	91.9
2l52_A		99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	90.25
1tke_A		224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	90.05
1jal_A		363	YCHF protein; nucleotide-binding fold, structural	89.91
3dto_A		223	BH2835 protein; all alpha-helical protein, structu	88.67
3b57_A		209	LIN1889 protein; Q92AN1, X-RAY, NESG, structural g	87.72
1v8c_A		168	MOAD related protein; riken structural genomics/pr	87.18
2ohf_A		396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	85.57
2qjl_A		99	URM1, ubiquitin-related modifier 1; ubiquitin-like	84.32
2pjq_A		231	Uncharacterized protein LP_2664; LPR71, NESG, stru	84.22
1ni3_A		392	YCHF GTPase, YCHF GTP-binding protein; structural	82.37

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8	Back alignment and structure

Probab=100.00  E-value=2.6e-99  Score=837.00  Aligned_cols=354  Identities=38%  Similarity=0.617  Sum_probs=285.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhcHH
Q 003224           99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDE  178 (838)
Q Consensus        99 ~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG~e  178 (838)
                      .+.+.+.+|+.||.++|.||+|++|+|||.||++||.||+++++     |.++++||||||+||||++|.++|++.||++
T Consensus        23 ~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~-----D~~~i~AALLHDvvEDt~~t~e~I~~~FG~~   97 (393)
T 1vj7_A           23 TDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHL-----DAVTVACGFLHDVVEDTDITLDNIEFDFGKD   97 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTC-----CHHHHHHHHHTTHHHHSSCCHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcC-----CHHHHHHHHhhhHHhcCCCCHHHHHHHhCHH
Confidence            35678999999999999999999999999999999999999874     6899999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHHHHHHHH
Q 003224          179 VAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ  258 (838)
Q Consensus       179 VA~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~iA~  258 (838)
                      |+.||+||||+++++..            .....|+|++|||||||++|+||++|||||||||||++..+|+++|+++|+
T Consensus        98 Va~lV~gvTk~~~~~~~------------~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~iA~  165 (393)
T 1vj7_A           98 VRDIVDGVTKLGKVEYK------------SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISR  165 (393)
T ss_dssp             HHHHHHHHHHHC--------------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHHHHH
T ss_pred             HHHHHHHHHhcccCCcc------------cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHHHHH
Confidence            99999999999887531            112458999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCcccccccccccccCCCCCccCccCCCCcccc
Q 003224          259 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTT  338 (838)
Q Consensus       259 ETl~IYAPLA~RLGl~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  338 (838)
                      ||++||||||||||||+||||||||||+||+|+.|+.|.+.|.+                                    
T Consensus       166 Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~------------------------------------  209 (393)
T 1vj7_A          166 ETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNE------------------------------------  209 (393)
T ss_dssp             HHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH------------------------------------
T ss_pred             HHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHH------------------------------------
Confidence            99999999999999999999999999999999999999999975                                    


Q ss_pred             hhhhhhhHHHhhhhccccchhhhhHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCc
Q 003224          339 FDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYGYIPGM  418 (838)
Q Consensus       339 ~~~~~~~~k~ll~a~~~~d~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~L~~~l~~~~~~~~~~gi  418 (838)
                                            .|.+|+.+++++.                      ..+++.|.+           .|+
T Consensus       210 ----------------------~r~~r~~~i~~i~----------------------~~l~~~L~~-----------~gi  234 (393)
T 1vj7_A          210 ----------------------KRREREALVDDIV----------------------TKIKSYTTE-----------QGL  234 (393)
T ss_dssp             ----------------------THHHHHHHHHHHH----------------------HHHHHHHHT-----------TTC
T ss_pred             ----------------------HHHHHHHHHHHHH----------------------HHHHHHHHh-----------cCC
Confidence                                  4778888888775                      133344432           267


Q ss_pred             eEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCCCC
Q 003224          419 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKP  498 (838)
Q Consensus       419 ~~~I~gR~K~~ySI~~Km~Rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~  498 (838)
                      .+.|+||+|++||||+||+||+.+|++|+|++||||||++         +.|||.++|+||+.|+|+|++|||||++||+
T Consensus       235 ~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~---------~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~  305 (393)
T 1vj7_A          235 FGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET---------QSDVYAMVGYIHELWRPMPGRFKDYIAAPKA  305 (393)
T ss_dssp             CCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS---------HHHHHHHHHHHHHHSCBCTTCCEETTTSCCT
T ss_pred             ceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC---------HHHHHHHHHHHHhcCCCCCCcccccccCCCc
Confidence            7899999999999999999999999999999999999985         8899999999999999999999999999999


Q ss_pred             CCCceeEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhcccccCCccccccccc------cchHHHhccCCCCCCCC
Q 003224          499 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMD------ESDIEASSSLSKDTDDH  570 (838)
Q Consensus       499 NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~GiAAhw~YK~~~~~~~~~~~~~------~~l~~~~~~~~~~~e~~  570 (838)
                      ||||||||+|.+|+| ++||||||..||.|||+||||||+||++.........++      ++|.+|++...++.||+
T Consensus       306 nGYqSlH~~v~~p~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~~~ef~  382 (393)
T 1vj7_A          306 NGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNGDAVDF  382 (393)
T ss_dssp             TCCCCEEEEEECSSS-EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC-----------
T ss_pred             CCcceeEEEEEeCCc-eEEEEEecHHHHHHHHhhHHHHhccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            999999999999999 999999999999999999999999998643210111222      33455665555556665

PyMOL of 1vj7

>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}	Back alignment and structure

>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8	Back alignment and structure

>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}	Back alignment and structure

>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}	Back alignment and structure

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}	Back alignment and structure

>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}	Back alignment and structure

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}	Back alignment and structure

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}	Back alignment and structure

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}	Back alignment and structure

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2	Back alignment and structure

>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}	Back alignment and structure

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}	Back alignment and structure

>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4	Back alignment and structure

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A	Back alignment and structure

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A	Back alignment and structure

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2	Back alignment and structure

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2	Back alignment and structure

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}	Back alignment and structure

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2	Back alignment and structure

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E	Back alignment and structure

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}	Back alignment and structure

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*	Back alignment and structure

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*	Back alignment and structure

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1	Back alignment and structure

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A	Back alignment and structure

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2	Back alignment and structure

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D	Back alignment and structure

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}	Back alignment and structure

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A	Back alignment and structure

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}	Back alignment and structure

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A	Back alignment and structure

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A	Back alignment and structure

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}	Back alignment and structure

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*	Back alignment and structure

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2	Back alignment and structure

>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1	Back alignment and structure

>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1	Back alignment and structure

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1	Back alignment and structure

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}	Back alignment and structure

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A	Back alignment and structure

>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1	Back alignment and structure

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		838
d1vj7a1		192	a.211.1.1 (A:5-196) Stringent response-like protei	9e-43
d2be3a1		203	d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase	1e-25
d1vj7a2		175	d.218.1.8 (A:197-371) Stringent response-like prot	3e-23
d1wxqa2		76	d.15.10.2 (A:320-395) GTP-binding protein PH0525 {	5e-07
d1rwsa_		68	d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeo	2e-05
d1zud21		65	d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carr	3e-04
d1nyra2		59	d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS	6e-04
d1tkea1		62	d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS	8e-04
d2cu3a1		63	d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675	0.004

>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192	Back information, alignment and structure


class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

 Score =  151 bits (383), Expect = 9e-43
 Identities = 76/187 (40%), Positives = 105/187 (56%), Gaps = 17/187 (9%)

Query: 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161
             V+KA+ +A  AH  Q RK+G+PY+ H I    ILA L   +      TV  G LHDVV
Sbjct: 22  AFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDA-----VTVACGFLHDVV 76

Query: 162 DDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVML 221
           +D   +L +IE +FG +V  +V GV++L              V   +   + A + R ML
Sbjct: 77  EDTDITLDNIEFDFGKDVRDIVDGVTKLG------------KVEYKSHEEQLAENHRKML 124

Query: 222 LGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCSLASRLGLWALKAELE 281
           + M  D RV+L+KLADRLHNMRT+  L   K   +++ET+ I+  LA RLG+  +K ELE
Sbjct: 125 MAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELE 184

Query: 282 DLCFAVL 288
           DL F  L
Sbjct: 185 DLAFRYL 191

PyMOL of d1vj7a1

>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203	Back information, alignment and structure

>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175	Back information, alignment and structure

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 76	Back information, alignment and structure

>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 68	Back information, alignment and structure

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Length = 65	Back information, alignment and structure

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59	Back information, alignment and structure

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62	Back information, alignment and structure

>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} Length = 63	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		838
d1vj7a1		192	Stringent response-like protein RelA N-terminal do	100.0
d1vj7a2		175	Stringent response-like protein RelA domain 2 {Str	100.0
d2be3a1		203	Putative GTP pyrophosphokinase SP1097 {Streptococc	99.96
d1wxqa2		76	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.43
d1tkea1		62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	99.13
d1nyra2		59	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	99.03
d1wxqa2		76	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.14
d1tkea1		62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	98.01
d1nyra2		59	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	97.54
d1zud21		65	Thiamin biosynthesis sulfur carrier protein ThiS {	97.44
d1rwsa_		68	Hypothetical protein PF1061 {Archaeon Pyrococcus f	97.19
d2hj1a1		77	Hypothetical protein HI0395 {Haemophilus influenza	97.09
d1tygb_		65	Thiamin biosynthesis sulfur carrier protein ThiS {	96.58
d2cu3a1		63	Uncharacterised protein TTHA0675 {Thermus thermoph	96.22
d1vjka_		88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	95.02
d1dm9a_		104	Heat shock protein 15 kD {Escherichia coli [TaxId:	83.73
d2qgsa1		216	Uncharacterized protein SE1688 {Staphylococcus epi	81.69
d3djba1		213	Uncharacterized protein BT9727_1981 {Bacillus thur	81.6
d3dtoa1		212	Uncharacterized protein BH2835 {Bacillus haloduran	80.09

>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]}	Back information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=4.7e-52  Score=417.87  Aligned_cols=174  Identities=43%  Similarity=0.632  Sum_probs=149.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhcHH
Q 003224           99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDE  178 (838)
Q Consensus        99 ~~~~~l~kA~~fA~~aH~gQ~RksGePYI~Hpl~VA~ILA~l~~~~g~~D~dtI~AALLHDvVEDT~~T~eeI~~~FG~e  178 (838)
                      .+.+++++|+.||.++|.||+|+||+||++||++||.||++++.     |.++++||||||++|||++|.++|+++||++
T Consensus        19 ~d~~~i~~A~~~A~~~H~gq~r~sG~py~~H~~~VA~iL~~~~~-----d~~~i~AalLhd~~edt~~t~e~I~~~FG~~   93 (192)
T d1vj7a1          19 TDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHL-----DAVTVACGFLHDVVEDTDITLDNIEFDFGKD   93 (192)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTC-----CHHHHHHHHHTTHHHHSSCCHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcccChHHHHHHHHHHHHHHHHhcC-----ChHHhhhhheechhhhchhHHHHHHHhcchh
Confidence            45688999999999999999999999999999999999999874     6899999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEeehhhHHhhhhhhhcCChHHHHHHHH
Q 003224          179 VAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ  258 (838)
Q Consensus       179 VA~LV~gVTKl~~l~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~ekq~~iA~  258 (838)
                      |+++|++|||+..++..            .....+++++|||+++|++|+||++||||||||||||+..+|+++++++|+
T Consensus        94 Va~lV~~ltk~~~~~~~------------~~~~~~ae~~rkmlla~~~d~rvvlIKLADRLhnlrtl~~~~~~k~~~~a~  161 (192)
T d1vj7a1          94 VRDIVDGVTKLGKVEYK------------SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISR  161 (192)
T ss_dssp             HHHHHHHHHHHC--------------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHHHHH
T ss_pred             HHHHHHHHHhhcccccc------------ccchHHHHHHHHHHHhhccCceeehhHHHHHHhhccccccCChHHHHHHHH
Confidence            99999999999876542            122357899999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHhhhhcChHHHHHHHHHHHHHhcC
Q 003224          259 ETLLIWCSLASRLGLWALKAELEDLCFAVLQ  289 (838)
Q Consensus       259 ETl~IYAPLA~RLGl~~iK~ELEDLaF~~L~  289 (838)
                      ||+++|+|||||||+|+||||||||||+|||
T Consensus       162 Et~~iyaplA~rLG~~~ik~eLEdl~f~~L~  192 (192)
T d1vj7a1         162 ETMEIYAPLAHRLGISRIKWELEDLAFRYLN  192 (192)
T ss_dssp             HHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999996

PyMOL of d1vj7a1

>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]}	Back information, alignment and structure

>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]}	Back information, alignment and structure

>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]}	Back information, alignment and structure

>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure