Citrus Sinensis ID: 003227

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------
MSRRVRRKVARRGKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCRFTFSL
ccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHcHHHHHHccccccccccccccccccHHHHHHHHHcccccEEEEEcccccccHHHHHccccccEEcccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHcccc
ccHHHHHHHHHcccccEEEccccccccccccccccccEccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHcccccccccHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHcHHHHHEcccccEEccHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHccEEEEEcccccHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHcccHHHHHHHHHHccHHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHEEccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHcHHHccccEEEEEEcc
MSRRVRRKVArrgkekvvlpsypevedevigseknevvdwtslpddtVIQLMSCLnyrdraslsSTCRTWralgaspclwssldlrahkCDIAMAASLASRCMNLQKLrfrgaesaDSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALeslqlgpdfcERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKlcpnltdigfldclnvDEVALGNVLSVRFLSVagtsnmkwGVVSQVWhklpklvgldvsrtdvgpitISRLLTSSKSLKVLCalncpvleeennisaVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDwrnsknkdkNLNEIMTWLEWILSHILLrtaesnpqglddfWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVindenasidcgRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAgglwnlsvgeehkgaiadagGVKALVDLIFKWSSGGDGVLERAAGALANlaaddkcsMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAahgdsnsnnsavgQEAGALEALVQLtrsphegvRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQScsnaspglqERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWnlafnpgnalriveEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFAligtstestskcvSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAghlrcrftfsl
msrrvrrkvarrgkekvvlpsypevedevigseknevvdwtslpDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPklvgldvsrtdvGPITIsrlltsskslKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAettkneknvfldwrnsknkdkNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALigtstestskCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEaghlrcrftfsl
MSrrvrrkvarrgkekvvLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNakvakavaeeggINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERaagalanlaaDDKCSMEVALAGGVHALVMLARSCKFEGVQEQaaralanlaaHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNReaiaaaggvealvvlaQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQafataaassapaaLTQVTERARIQEAGHLRCRFTFSL
****************************VIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARAL***************************************EAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAA***************RIQEAGHLRCRF****
************************************VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQS*******LQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTEST**************KHIEAFVLTFSDPQAFATAAASSAPAALT************HLRCRFTFSL
**************EKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFA************QVTERARIQEAGHLRCRFTFSL
****************************VIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCRFTFSL
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MSRRVRRKVARRGKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCRFTFSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query837 2.2.26 [Sep-21-2011]
O22161930 Protein ARABIDILLO 1 OS=A yes no 0.992 0.893 0.793 0.0
Q9M224928 Protein ARABIDILLO 2 OS=A no no 0.992 0.895 0.765 0.0
O22193826 U-box domain-containing p no no 0.270 0.273 0.327 1e-17
Q4I1B1 559 Vacuolar protein 8 OS=Gib yes no 0.303 0.454 0.322 9e-17
Q54I71757 Protein aardvark OS=Dicty yes no 0.308 0.340 0.277 4e-16
Q9SNC6660 U-box domain-containing p no no 0.209 0.265 0.327 2e-15
Q6BTZ4 560 Vacuolar protein 8 OS=Deb yes no 0.272 0.407 0.311 2e-14
Q59MN0 585 Vacuolar protein 8 OS=Can N/A no 0.272 0.389 0.319 3e-14
Q5EFZ4556 Vacuolar protein 8 OS=Kom yes no 0.461 0.694 0.268 3e-14
Q8GWV5760 U-box domain-containing p no no 0.326 0.359 0.273 4e-14
>sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1 Back     alignment and function desciption
 Score = 1301 bits (3367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/843 (79%), Positives = 743/843 (88%), Gaps = 12/843 (1%)

Query: 1   MSRRVRRKVAR-RGKEKVV-LPSYPEV----EDEVIGSEK-NEVVDWTSLPDDTVIQLMS 53
           MSRRVRRK+   +GK+KVV LPSYPE     E++++  E  +  VDW SLP DTV+QL +
Sbjct: 1   MSRRVRRKLEEEKGKDKVVVLPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFT 60

Query: 54  CLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGA 113
           CLNYRDRASL+STC+TWR LGAS CLW+SLDLR HK D +MAASLASRC+NL  LRFRG 
Sbjct: 61  CLNYRDRASLASTCKTWRCLGASSCLWTSLDLRPHKFDASMAASLASRCVNLHYLRFRGV 120

Query: 114 ESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKA 173
           ESADS+IHL+ARNL E+SGDYC+KITDATLS+IVARHEALESLQLGPDFCERITSDA+KA
Sbjct: 121 ESADSLIHLKARNLIEVSGDYCKKITDATLSMIVARHEALESLQLGPDFCERITSDAIKA 180

Query: 174 IALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLS 233
           +A CCPKLKKLRLSGIRD+  +AI ALAK CP L D+GFLDCLN+DE ALG V+SVR+LS
Sbjct: 181 VAFCCPKLKKLRLSGIRDVTSEAIEALAKHCPQLNDLGFLDCLNIDEEALGKVVSVRYLS 240

Query: 234 VAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293
           VAGTSN+KW + S  W KLPKL GLDVSRTD+GP  +SR LTSS+SLKVLCALNC VLEE
Sbjct: 241 VAGTSNIKWSIASNNWDKLPKLTGLDVSRTDIGPTAVSRFLTSSQSLKVLCALNCHVLEE 300

Query: 294 -ENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRN--SKNKDKNLNEIM 350
            E+ IS  + KGK+LLALFT++F  LAS+FA+ TK  K++F  WR      KDK +N+ +
Sbjct: 301 DESLISYNRFKGKVLLALFTNVFDGLASIFADNTKKPKDIFAYWRELMKTTKDKTINDFI 360

Query: 351 TWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVIN 410
            W+EWI+SH LLRTAE NP+GLDDFWL +GA LLL+LMQS+QEDVQER+ATGLATFVV++
Sbjct: 361 HWIEWIISHTLLRTAECNPEGLDDFWLNEGAALLLNLMQSSQEDVQERSATGLATFVVVD 420

Query: 411 DENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG 470
           DENASIDCGRAEAVMKDGGIRLLL+LAKSWREGLQSEAAKAIANLSVNA +AK+VAEEGG
Sbjct: 421 DENASIDCGRAEAVMKDGGIRLLLELAKSWREGLQSEAAKAIANLSVNANIAKSVAEEGG 480

Query: 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530
           I ILA LA+SMNRLVAEEAAGGLWNLSVGEEHK AIA AGGVKALVDLIF+W +G DGVL
Sbjct: 481 IKILAGLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVKALVDLIFRWPNGCDGVL 540

Query: 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590
           ERAAGALANLAADDKCSMEVA AGGVHALVMLAR+CK+EGVQEQAARALANLAAHGDSN+
Sbjct: 541 ERAAGALANLAADDKCSMEVAKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNN 600

Query: 591 NNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLA 650
           NN+AVGQEAGALEALVQLT+SPHEGVRQEAAGALWNLSFDD+NRE+I+ AGGVEALV LA
Sbjct: 601 NNAAVGQEAGALEALVQLTKSPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALA 660

Query: 651 QSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALW 710
           QSCSNAS GLQERAAGALWGLSVSEAN +AIGREGGV PLIALARSEAEDVHETAAGALW
Sbjct: 661 QSCSNASTGLQERAAGALWGLSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALW 720

Query: 711 NLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFAL-IGT-S 768
           NLAFNPGNALRIVEEGGVPALVHLCSSS SKMARFMAALALAYMFDGRMDE+AL IGT S
Sbjct: 721 NLAFNPGNALRIVEEGGVPALVHLCSSSVSKMARFMAALALAYMFDGRMDEYALMIGTSS 780

Query: 769 TESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGH 828
           +ESTSK +SLDGAR MALKHIEAFVL+F DP  F +   SS P  L QVTERARIQEAGH
Sbjct: 781 SESTSKNISLDGARNMALKHIEAFVLSFIDPHIFESPVVSSTPTMLAQVTERARIQEAGH 840

Query: 829 LRC 831
           LRC
Sbjct: 841 LRC 843
Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M224|ADLO2_ARATH Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1 Back     alignment and function description
>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 Back     alignment and function description
>sp|Q4I1B1|VAC8_GIBZE Vacuolar protein 8 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=VAC8 PE=3 SV=4 Back     alignment and function description
>sp|Q54I71|AARA_DICDI Protein aardvark OS=Dictyostelium discoideum GN=aarA PE=2 SV=1 Back     alignment and function description
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 Back     alignment and function description
>sp|Q6BTZ4|VAC8_DEBHA Vacuolar protein 8 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=VAC8 PE=3 SV=4 Back     alignment and function description
>sp|Q59MN0|VAC8_CANAL Vacuolar protein 8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VAC8 PE=3 SV=3 Back     alignment and function description
>sp|Q5EFZ4|VAC8_PICPA Vacuolar protein 8 OS=Komagataella pastoris GN=VAC8 PE=3 SV=3 Back     alignment and function description
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query837
255541074920 ubiquitin-protein ligase, putative [Rici 0.978 0.890 0.892 0.0
224063613918 predicted protein [Populus trichocarpa] 0.992 0.905 0.868 0.0
224137174918 predicted protein [Populus trichocarpa] 0.992 0.905 0.867 0.0
449431988918 PREDICTED: protein ARABIDILLO 1-like [Cu 0.978 0.892 0.831 0.0
356568604921 PREDICTED: protein ARABIDILLO 1-like [Gl 0.992 0.902 0.833 0.0
225453418927 PREDICTED: protein ARABIDILLO 1-like [Vi 0.992 0.896 0.830 0.0
18406656930 protein ARABIDILLO 1 [Arabidopsis thalia 0.992 0.893 0.793 0.0
297828211929 armadillo/beta-catenin repeat family pro 0.992 0.894 0.799 0.0
356531812921 PREDICTED: protein ARABIDILLO 1-like [Gl 0.977 0.888 0.830 0.0
297820892928 armadillo/beta-catenin repeat family pro 0.992 0.895 0.763 0.0
>gi|255541074|ref|XP_002511601.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223548781|gb|EEF50270.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1408 bits (3644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/821 (89%), Positives = 772/821 (94%), Gaps = 2/821 (0%)

Query: 13  GKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRA 72
           GKEKV L S+PE+EDEV  S+ NE VDWT LPDDTVIQL SCLNYRDRASLSSTCRTWRA
Sbjct: 13  GKEKVALSSFPEIEDEVSCSDSNEAVDWTGLPDDTVIQLFSCLNYRDRASLSSTCRTWRA 72

Query: 73  LGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSG 132
           LG SPCLW+SLDLR+HKCD A A SLA RC+ LQKLRFRGAESAD+IIHLQA+NLRE+SG
Sbjct: 73  LGISPCLWTSLDLRSHKCDAATATSLAPRCIQLQKLRFRGAESADAIIHLQAKNLREISG 132

Query: 133 DYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDI 192
           DYCRKITDA+LSVIVARHE LESLQLGPDFCERI+SDA+KAIA CCPKLKKLR+SGIRD+
Sbjct: 133 DYCRKITDASLSVIVARHELLESLQLGPDFCERISSDAIKAIAFCCPKLKKLRVSGIRDV 192

Query: 193 CGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252
             DAINALAK CPNL DIGFLDCLNVDEVALGNV+SVRFLSVAGTSNMKWGV+S +WHKL
Sbjct: 193 SADAINALAKHCPNLIDIGFLDCLNVDEVALGNVVSVRFLSVAGTSNMKWGVISHLWHKL 252

Query: 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFT 312
           PKL+GLDVSRTD+GP  +SRLL+SS SLKVLCALNC VLEE+   SA + KGKLL+ALFT
Sbjct: 253 PKLIGLDVSRTDIGPTAVSRLLSSSHSLKVLCALNCSVLEEDATFSANRYKGKLLIALFT 312

Query: 313 DIFKALASLFAETT--KNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQ 370
           DIFK L+SLFA+TT  K  KNVFLDWR+SK +DKNL++IMTWLEWILSH LL TAESNPQ
Sbjct: 313 DIFKGLSSLFADTTNTKKGKNVFLDWRSSKTQDKNLDDIMTWLEWILSHTLLPTAESNPQ 372

Query: 371 GLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGI 430
           GLDDFWLKQGA +LLSLMQS+QEDVQERAATGLATFVVI+DENASIDCGRAEAVM+DGGI
Sbjct: 373 GLDDFWLKQGAAILLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGI 432

Query: 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAA 490
           RLLLDLAKSWREGLQSEAAKAIANLSVNA VAKAVAEEGGINILA LARSMNRLVAEEAA
Sbjct: 433 RLLLDLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGINILAGLARSMNRLVAEEAA 492

Query: 491 GGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550
           GGLWNLSVGEEHKGAIA+AGG+KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV
Sbjct: 493 GGLWNLSVGEEHKGAIAEAGGIKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 552

Query: 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR 610
           ALAGGVHALVMLAR+CKFEGVQEQAARALANLAAHGDSN+NN+AVGQEAGALEALVQLTR
Sbjct: 553 ALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNTNNAAVGQEAGALEALVQLTR 612

Query: 611 SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWG 670
           SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALV LAQSCSNASPGLQERAAGALWG
Sbjct: 613 SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALAQSCSNASPGLQERAAGALWG 672

Query: 671 LSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA 730
           LSVSEAN IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA
Sbjct: 673 LSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA 732

Query: 731 LVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIE 790
           LVHLCSSS SKMARFMAALALAYMFDGRMDEFALIGTSTESTSK VSLDGARRMALKHIE
Sbjct: 733 LVHLCSSSVSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKSVSLDGARRMALKHIE 792

Query: 791 AFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRC 831
           AFVLTFSD Q FA AAASSAPAAL QVTERARIQEAGHLRC
Sbjct: 793 AFVLTFSDQQTFAVAAASSAPAALAQVTERARIQEAGHLRC 833

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224063613|ref|XP_002301228.1| predicted protein [Populus trichocarpa] gi|222842954|gb|EEE80501.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224137174|ref|XP_002327055.1| predicted protein [Populus trichocarpa] gi|222835370|gb|EEE73805.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449431988|ref|XP_004133782.1| PREDICTED: protein ARABIDILLO 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356568604|ref|XP_003552500.1| PREDICTED: protein ARABIDILLO 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225453418|ref|XP_002274749.1| PREDICTED: protein ARABIDILLO 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|18406656|ref|NP_566029.1| protein ARABIDILLO 1 [Arabidopsis thaliana] gi|75219086|sp|O22161.1|ADLO1_ARATH RecName: Full=Protein ARABIDILLO 1; AltName: Full=F-box only protein 5 gi|2344894|gb|AAC31834.1| F-box protein family, AtFBX5 [Arabidopsis thaliana] gi|330255388|gb|AEC10482.1| protein ARABIDILLO 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297828211|ref|XP_002881988.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297327827|gb|EFH58247.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356531812|ref|XP_003534470.1| PREDICTED: protein ARABIDILLO 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297820892|ref|XP_002878329.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324167|gb|EFH54588.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query837
TAIR|locus:2055033930 ARABIDILLO-1 "AT2G44900" [Arab 0.971 0.874 0.741 0.0
TAIR|locus:2103351928 ARABIDILLO-2 "AT3G60350" [Arab 0.970 0.875 0.706 5e-305
TAIR|locus:2075140660 PUB13 "plant U-box 13" [Arabid 0.209 0.265 0.3 3.3e-11
RGD|621722276 Fbxl20 "F-box and leucine-rich 0.227 0.688 0.281 4.1e-11
TAIR|locus:2045334829 PUB4 "plant U-box 4" [Arabidop 0.234 0.236 0.299 1.6e-10
MGI|MGI:1919444436 Fbxl20 "F-box and leucine-rich 0.227 0.435 0.281 2.4e-10
MGI|MGI:2443416790 Fbxl13 "F-box and leucine-rich 0.136 0.144 0.260 2.8e-10
UNIPROTKB|A6H779423 FBXL2 "F-box/LRR-repeat protei 0.321 0.635 0.265 3.7e-10
UNIPROTKB|Q58DG6436 FBXL20 "F-box/LRR-repeat prote 0.227 0.435 0.276 5.1e-10
UNIPROTKB|Q96IG2436 FBXL20 "F-box/LRR-repeat prote 0.227 0.435 0.276 5.1e-10
TAIR|locus:2055033 ARABIDILLO-1 "AT2G44900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3084 (1090.7 bits), Expect = 0., P = 0.
 Identities = 610/823 (74%), Positives = 677/823 (82%)

Query:    19 LPSYPEV----EDEVIGSEK-NEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRAL 73
             LPSYPE     E++++  E  +  VDW SLP DTV+QL +CLNYRDRASL+STC+TWR L
Sbjct:    21 LPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFTCLNYRDRASLASTCKTWRCL 80

Query:    74 GASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGD 133
             GAS CLW+SLDLR HK D +MAASLASRC+NL  LRFRG ESADS+IHL+ARNL E+SGD
Sbjct:    81 GASSCLWTSLDLRPHKFDASMAASLASRCVNLHYLRFRGVESADSLIHLKARNLIEVSGD 140

Query:   134 YCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDIC 193
             YC+KITDATLS+IVARHEALESLQLGPDFCERITSDA+KA+A CCPKLKKLRLSGIRD+ 
Sbjct:   141 YCKKITDATLSMIVARHEALESLQLGPDFCERITSDAIKAVAFCCPKLKKLRLSGIRDVT 200

Query:   194 GDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253
              +AI ALAK CP L D+GFLDCLN+DE ALG V+SVR+LSVAGTSN+KW + S  W KLP
Sbjct:   201 SEAIEALAKHCPQLNDLGFLDCLNIDEEALGKVVSVRYLSVAGTSNIKWSIASNNWDKLP 260

Query:   254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENN-ISAVKSKGKLLLALFT 312
             KL GLDVSRTD+GP  +SR LTSS+SLKVLCALNC VLEE+ + IS  + KGK+LLALFT
Sbjct:   261 KLTGLDVSRTDIGPTAVSRFLTSSQSLKVLCALNCHVLEEDESLISYNRFKGKVLLALFT 320

Query:   313 DIFKALASLFAETTKNEKNVFLDWRN--SKNKDKNLNEIMTWLEWILSHILLRTAESNPQ 370
             ++F  LAS+FA+ TK  K++F  WR      KDK +N+ + W+EWI+SH LLRTAE NP+
Sbjct:   321 NVFDGLASIFADNTKKPKDIFAYWRELMKTTKDKTINDFIHWIEWIISHTLLRTAECNPE 380

Query:   371 GLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGI 430
             GLDDFWL +GA LLL+LMQS+QEDVQER+ATGLATFVV++DENASIDCGRAEAVMKDGGI
Sbjct:   381 GLDDFWLNEGAALLLNLMQSSQEDVQERSATGLATFVVVDDENASIDCGRAEAVMKDGGI 440

Query:   431 RLLLDLAKSWREGLQSEAAKAIANLSVNXXXXXXXXXXXXINILAVLARSMNRLVAEEAA 490
             RLLL+LAKSWREGLQSEAAKAIANLSVN            I ILA LA+SMNRLVAEEAA
Sbjct:   441 RLLLELAKSWREGLQSEAAKAIANLSVNANIAKSVAEEGGIKILAGLAKSMNRLVAEEAA 500

Query:   491 GGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEV 550
             GGLWNLSVGEEHK AIA AGGVKALVDLIF+W +G DGVLER          DDKCSMEV
Sbjct:   501 GGLWNLSVGEEHKNAIAQAGGVKALVDLIFRWPNGCDGVLERAAGALANLAADDKCSMEV 560

Query:   551 ALAGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTR 610
             A AGGVHALVMLAR+CK+EGVQEQ          HGDSN+NN+AVGQEAGALEALVQLT+
Sbjct:   561 AKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQLTK 620

Query:   611 SPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWG 670
             SPHEGVRQEAAGALWNLSFDD+NR                QSCSNAS GLQERAAGALWG
Sbjct:   621 SPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALAQSCSNASTGLQERAAGALWG 680

Query:   671 LSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA 730
             LSVSEAN +AIGREGGV PLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA
Sbjct:   681 LSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA 740

Query:   731 LVHLCSSSGSKMARFMAALALAYMFDGRMDEFAL-IGTST-ESTSKCVSLDGARRMALKH 788
             LVHLCSSS SKMARFMAALALAYMFDGRMDE+AL IGTS+ ESTSK +SLDGAR MALKH
Sbjct:   741 LVHLCSSSVSKMARFMAALALAYMFDGRMDEYALMIGTSSSESTSKNISLDGARNMALKH 800

Query:   789 IEAFVLTFSDPQXXXXXXXXXXXXXLTQVTERARIQEAGHLRC 831
             IEAFVL+F DP              L QVTERARIQEAGHLRC
Sbjct:   801 IEAFVLSFIDPHIFESPVVSSTPTMLAQVTERARIQEAGHLRC 843
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0048527 "lateral root development" evidence=IGI;IMP
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2103351 ARABIDILLO-2 "AT3G60350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|621722 Fbxl20 "F-box and leucine-rich repeat protein 20" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:2443416 Fbxl13 "F-box and leucine-rich repeat protein 13" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M224ADLO2_ARATHNo assigned EC number0.76560.99280.8954nono
O22161ADLO1_ARATHNo assigned EC number0.79350.99280.8935yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query837
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 4e-16
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 2e-15
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 4e-12
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-11
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 3e-11
pfam1293747 pfam12937, F-box-like, F-box-like 2e-09
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 4e-09
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 5e-09
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 5e-07
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 3e-06
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 3e-06
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 4e-06
smart0018541 smart00185, ARM, Armadillo/beta-catenin-like repea 6e-06
pfam0064648 pfam00646, F-box, F-box domain 7e-06
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 3e-05
smart0018541 smart00185, ARM, Armadillo/beta-catenin-like repea 1e-04
COG5064526 COG5064, SRP1, Karyopherin (importin) alpha [Intra 1e-04
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 6e-04
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 0.001
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 0.002
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 0.003
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 0.004
COG5064 526 COG5064, SRP1, Karyopherin (importin) alpha [Intra 0.004
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information 
 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 5/118 (4%)

Query: 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSF-DDRNREAIAAAGGVEALVVLAQSCSNA 656
           +AG L ALV L  S  E V++EAA AL NLS  ++ N +A+  AGG+ ALV L +S    
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED-- 62

Query: 657 SPGLQERAAGALWGLSVSEANCIAIGRE-GGVAPLIALARSEAEDVHETAAGALWNLA 713
              + + A  AL  L+    +   I  E GGV  L+ L  S  ED+ + A GAL NLA
Sbjct: 63  -EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 837
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.97
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.97
KOG4341483 consensus F-box protein containing LRR [General fu 99.96
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.95
PF05804708 KAP: Kinesin-associated protein (KAP) 99.94
PF05804708 KAP: Kinesin-associated protein (KAP) 99.93
KOG1048717 consensus Neural adherens junction protein Plakoph 99.91
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.88
KOG1048717 consensus Neural adherens junction protein Plakoph 99.84
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.82
KOG4341483 consensus F-box protein containing LRR [General fu 99.82
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.78
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.78
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.76
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.7
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.66
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 99.66
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.65
PRK09687280 putative lyase; Provisional 99.64
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.63
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.62
PRK09687280 putative lyase; Provisional 99.59
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.59
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.58
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.58
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.53
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 99.49
KOG1293678 consensus Proteins containing armadillo/beta-caten 99.4
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.36
KOG1947482 consensus Leucine rich repeat proteins, some prote 99.36
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.35
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.34
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 99.34
KOG1947482 consensus Leucine rich repeat proteins, some prote 99.24
KOG1293 678 consensus Proteins containing armadillo/beta-caten 99.22
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 99.21
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.18
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 99.15
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.15
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.14
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.12
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.11
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 99.03
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.0
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.98
KOG3678 832 consensus SARM protein (with sterile alpha and arm 98.97
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.97
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.97
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.95
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 98.94
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.92
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.91
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 98.89
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.87
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 98.87
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 98.85
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.84
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.83
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.81
KOG3678 832 consensus SARM protein (with sterile alpha and arm 98.81
TIGR02270410 conserved hypothetical protein. Members are found 98.79
TIGR02270410 conserved hypothetical protein. Members are found 98.75
PTZ00429 746 beta-adaptin; Provisional 98.72
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.71
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 98.71
PTZ00429 746 beta-adaptin; Provisional 98.68
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 98.66
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.66
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.62
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.61
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.6
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.6
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.56
PF05536543 Neurochondrin: Neurochondrin 98.55
COG1413335 FOG: HEAT repeat [Energy production and conversion 98.52
KOG4194873 consensus Membrane glycoprotein LIG-1 [Signal tran 98.49
KOG0212 675 consensus Uncharacterized conserved protein [Funct 98.47
COG1413335 FOG: HEAT repeat [Energy production and conversion 98.45
KOG4646173 consensus Uncharacterized conserved protein, conta 98.44
PLN032101153 Resistant to P. syringae 6; Provisional 98.42
KOG1242569 consensus Protein containing adaptin N-terminal re 98.41
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 98.39
KOG4646173 consensus Uncharacterized conserved protein, conta 98.34
KOG2734536 consensus Uncharacterized conserved protein [Funct 98.32
KOG2734536 consensus Uncharacterized conserved protein [Funct 98.31
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.31
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 98.27
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.25
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.24
KOG0212 675 consensus Uncharacterized conserved protein [Funct 98.24
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.18
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.17
COG5369743 Uncharacterized conserved protein [Function unknow 98.16
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.14
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 98.13
PLN032101153 Resistant to P. syringae 6; Provisional 98.12
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.1
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.1
KOG4194873 consensus Membrane glycoprotein LIG-1 [Signal tran 98.07
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.06
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.04
KOG06181081 consensus Serine/threonine phosphatase 2C containi 98.04
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 98.03
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.03
PF05536 543 Neurochondrin: Neurochondrin 98.01
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 98.0
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.98
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 97.97
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.97
KOG2982418 consensus Uncharacterized conserved protein [Funct 97.96
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.96
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.94
KOG1242569 consensus Protein containing adaptin N-terminal re 97.94
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 97.92
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.92
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 97.92
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.91
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.88
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.88
COG5369743 Uncharacterized conserved protein [Function unknow 97.82
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 97.82
KOG0567289 consensus HEAT repeat-containing protein [General 97.81
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.81
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.79
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.77
KOG3864221 consensus Uncharacterized conserved protein [Funct 97.76
KOG0567289 consensus HEAT repeat-containing protein [General 97.72
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 97.7
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.69
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.68
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.68
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.68
KOG3864221 consensus Uncharacterized conserved protein [Funct 97.64
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 97.64
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.6
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.6
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.59
KOG2982418 consensus Uncharacterized conserved protein [Funct 97.48
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.44
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.4
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 97.39
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 97.38
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 97.26
PRK15387788 E3 ubiquitin-protein ligase SspH2; Provisional 97.26
KOG06181081 consensus Serine/threonine phosphatase 2C containi 97.24
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 97.2
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.19
PRK15370754 E3 ubiquitin-protein ligase SlrP; Provisional 97.17
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.14
PRK15387788 E3 ubiquitin-protein ligase SspH2; Provisional 97.08
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.06
KOG2062 929 consensus 26S proteasome regulatory complex, subun 96.97
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.96
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.96
PRK15370754 E3 ubiquitin-protein ligase SlrP; Provisional 96.88
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.87
KOG2062 929 consensus 26S proteasome regulatory complex, subun 96.86
KOG4308478 consensus LRR-containing protein [Function unknown 96.82
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.81
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.77
KOG0617264 consensus Ras suppressor protein (contains leucine 96.68
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 96.66
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 96.66
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 96.65
PF11841160 DUF3361: Domain of unknown function (DUF3361) 96.64
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.63
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.63
PF11841160 DUF3361: Domain of unknown function (DUF3361) 96.61
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 96.56
KOG3036293 consensus Protein involved in cell differentiation 96.55
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 96.54
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 96.51
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.5
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 96.48
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 96.33
KOG2123388 consensus Uncharacterized conserved protein [Funct 96.31
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 96.29
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 96.28
KOG4308478 consensus LRR-containing protein [Function unknown 96.25
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.2
PRK14707 2710 hypothetical protein; Provisional 96.2
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.18
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 96.17
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.17
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 96.16
KOG2123388 consensus Uncharacterized conserved protein [Funct 96.14
KOG0472565 consensus Leucine-rich repeat protein [Function un 96.11
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.03
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 95.99
KOG1259490 consensus Nischarin, modulator of integrin alpha5 95.99
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 95.97
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 95.9
KOG3036293 consensus Protein involved in cell differentiation 95.89
KOG4535728 consensus HEAT and armadillo repeat-containing pro 95.85
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 95.81
PF05004309 IFRD: Interferon-related developmental regulator ( 95.81
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 95.79
PRK15386426 type III secretion protein GogB; Provisional 95.77
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 95.76
KOG2997366 consensus F-box protein FBX9 [General function pre 95.73
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 95.65
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.65
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 95.62
PRK14707 2710 hypothetical protein; Provisional 95.6
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 95.59
KOG4535728 consensus HEAT and armadillo repeat-containing pro 95.58
COG5116 926 RPN2 26S proteasome regulatory complex component [ 95.56
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 95.56
KOG0281499 consensus Beta-TrCP (transducin repeats containing 95.54
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.52
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.41
PF08045257 CDC14: Cell division control protein 14, SIN compo 95.38
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 95.34
PF07814361 WAPL: Wings apart-like protein regulation of heter 95.26
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 95.21
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 95.18
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.15
KOG4237498 consensus Extracellular matrix protein slit, conta 95.14
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 95.07
PF05004309 IFRD: Interferon-related developmental regulator ( 95.07
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 95.04
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 94.99
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 94.95
PLN03150623 hypothetical protein; Provisional 94.94
KOG0617264 consensus Ras suppressor protein (contains leucine 94.86
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.84
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 94.76
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 94.72
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 94.62
KOG4653982 consensus Uncharacterized conserved protein [Funct 94.58
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 94.57
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 94.5
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 94.35
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 94.34
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 94.22
PRK15386426 type III secretion protein GogB; Provisional 94.17
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 94.1
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 94.04
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 93.82
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 93.75
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.66
KOG2025 892 consensus Chromosome condensation complex Condensi 93.57
PF11701157 UNC45-central: Myosin-binding striated muscle asse 93.46
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.44
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.32
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 93.3
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 93.26
PF07814361 WAPL: Wings apart-like protein regulation of heter 93.26
PF11701157 UNC45-central: Myosin-binding striated muscle asse 93.18
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 93.14
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 93.09
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 93.04
PLN03150623 hypothetical protein; Provisional 92.93
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 92.83
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 92.79
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 92.76
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 92.7
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 92.65
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 92.56
PF08045257 CDC14: Cell division control protein 14, SIN compo 92.53
KOG2025 892 consensus Chromosome condensation complex Condensi 92.37
KOG2032533 consensus Uncharacterized conserved protein [Funct 92.23
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 91.97
KOG4653982 consensus Uncharacterized conserved protein [Funct 91.85
KOG2032533 consensus Uncharacterized conserved protein [Funct 91.74
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 91.34
COG5116 926 RPN2 26S proteasome regulatory complex component [ 91.27
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 91.18
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 91.15
KOG4237498 consensus Extracellular matrix protein slit, conta 91.15
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 91.04
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 90.73
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 90.46
smart00638574 LPD_N Lipoprotein N-terminal Domain. 90.38
KOG04141251 consensus Chromosome condensation complex Condensi 90.2
smart0036828 LRR_RI Leucine rich repeat, ribonuclease inhibitor 90.12
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 89.72
KOG12481176 consensus Uncharacterized conserved protein [Funct 89.71
KOG0472565 consensus Leucine-rich repeat protein [Function un 89.69
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 89.49
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 89.08
PF14225262 MOR2-PAG1_C: Cell morphogenesis C-terminal 88.77
KOG2956516 consensus CLIP-associating protein [General functi 88.68
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 88.5
COG5209315 RCD1 Uncharacterized protein involved in cell diff 87.72
KOG04141251 consensus Chromosome condensation complex Condensi 87.46
KOG1788 2799 consensus Uncharacterized conserved protein [Funct 87.08
PF06371187 Drf_GBD: Diaphanous GTPase-binding Domain; InterPr 86.84
KOG1566342 consensus Conserved protein Mo25 [Function unknown 85.96
KOG2956516 consensus CLIP-associating protein [General functi 85.79
COG50981128 Chromosome condensation complex Condensin, subunit 85.15
KOG2137700 consensus Protein kinase [Signal transduction mech 85.04
PF06371187 Drf_GBD: Diaphanous GTPase-binding Domain; InterPr 84.89
PF08324268 PUL: PUL domain; InterPro: IPR013535 The PUL (afte 83.78
KOG4464532 consensus Signaling protein RIC-8/synembryn (regul 83.74
PF14500262 MMS19_N: Dos2-interacting transcription regulator 82.38
PF12031257 DUF3518: Domain of unknown function (DUF3518); Int 82.06
PF12031257 DUF3518: Domain of unknown function (DUF3518); Int 82.04
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 81.97
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 81.75
PF08324268 PUL: PUL domain; InterPro: IPR013535 The PUL (afte 81.48
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 80.39
COG5209315 RCD1 Uncharacterized protein involved in cell diff 80.36
PF14500262 MMS19_N: Dos2-interacting transcription regulator 80.1
KOG3763585 consensus mRNA export factor TAP/MEX67 [RNA proces 80.03
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-33  Score=336.24  Aligned_cols=382  Identities=25%  Similarity=0.275  Sum_probs=312.9

Q ss_pred             HHHHhhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc
Q 003227          360 ILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS  439 (837)
Q Consensus       360 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~  439 (837)
                      .+.+++.........++..|+||.++++|+++++.+|..|+.+|.+++....+       .+..+++.|+||.|+++|++
T Consensus       170 AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-------~~~aVIeaGaVP~LV~LL~s  242 (2102)
T PLN03200        170 ALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-------SISKVLDAGAVKQLLKLLGQ  242 (2102)
T ss_pred             HHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-------HHHHHHHCCCHHHHHHHHcc
Confidence            45666655543445556778899999999999999999999999888765443       36789999999999999987


Q ss_pred             C-ChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhcCC---------HHHHHHHHHHHHhhccCc-c------
Q 003227          440 W-REGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMN---------RLVAEEAAGGLWNLSVGE-E------  501 (837)
Q Consensus       440 ~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~---------~~~~~~a~~~L~~l~~~~-~------  501 (837)
                      + ++.+|+.|+++|.+++. +++.+..+++.||++.|++++..++         ..+++.|+++|.||+.+- .      
T Consensus       243 g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~  322 (2102)
T PLN03200        243 GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLG  322 (2102)
T ss_pred             CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHH
Confidence            4 67999999999999999 6899999999999999999997644         446899999999988731 0      


Q ss_pred             -----ch--H------------------------------------------------------------------HHHh
Q 003227          502 -----HK--G------------------------------------------------------------------AIAD  508 (837)
Q Consensus       502 -----~~--~------------------------------------------------------------------~l~~  508 (837)
                           .+  .                                                                  .+.+
T Consensus       323 ~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~  402 (2102)
T PLN03200        323 ELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH  402 (2102)
T ss_pred             HhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Confidence                 00  0                                                                  0111


Q ss_pred             hCCHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Q 003227          509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD  587 (837)
Q Consensus       509 ~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  587 (837)
                      .++++.|+.++.   ..+.+++..++++|++++.+ ++.+..+++.|+++.|+++|.+++ ..+++.|+++|.+++..  
T Consensus       403 ~daik~LV~LL~---~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~--  476 (2102)
T PLN03200        403 AEAKKVLVGLIT---MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDE--  476 (2102)
T ss_pred             ccchhhhhhhhc---cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC--
Confidence            223333333442   34568899999999999975 677899999999999999999876 89999999999999975  


Q ss_pred             CCCcccchhhccchHHHHHHHcCCCCHHHHHHHHHHHHhhcCChhh-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 003227          588 SNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAG  666 (837)
Q Consensus       588 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~v~~~A~~  666 (837)
                       +++++..+.+.|++|.|+++|.+++.++++.|+++|.|++.++++ +..+.+.|++++|+++|.+   ++.++++.|++
T Consensus       477 -ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s---gd~~~q~~Aa~  552 (2102)
T PLN03200        477 -VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN---GGPKGQEIAAK  552 (2102)
T ss_pred             -CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHH
Confidence             566788889999999999999999999999999999999998655 4455578999999999998   89999999999


Q ss_pred             HHHhcccCccc--------------------------------------hhhhhccCChHHHHHHhccCCHHHHHHHHHH
Q 003227          667 ALWGLSVSEAN--------------------------------------CIAIGREGGVAPLIALARSEAEDVHETAAGA  708 (837)
Q Consensus       667 ~L~~l~~~~~~--------------------------------------~~~l~~~~~i~~L~~lL~s~~~~v~~~a~~~  708 (837)
                      +|.+++...+.                                      .......|+++.|+++++++++.+++.|+++
T Consensus       553 AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~i  632 (2102)
T PLN03200        553 TLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASV  632 (2102)
T ss_pred             HHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999632110                                      0111246899999999999999999999999


Q ss_pred             HHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHhhCCCC
Q 003227          709 LWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM  759 (837)
Q Consensus       709 L~~l~~-~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l~~~~~  759 (837)
                      |.+++. +++.+..++..|++++|+.++.+++ ..++..|+++|.++..+..
T Consensus       633 LsnL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~  683 (2102)
T PLN03200        633 LADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIK  683 (2102)
T ss_pred             HHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCC
Confidence            999988 5566788999999999999999875 7799999999999986433

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4308 consensus LRR-containing protein [Function unknown] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>KOG4308 consensus LRR-containing protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1788 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] Back     alignment and domain information
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] Back     alignment and domain information
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes Back     alignment and domain information
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query837
1fs2_A272 Insights Into Scf Ubiquitin Ligases From The Struct 2e-11
4hxt_A252 Crystal Structure Of Engineered Protein. Northeast 5e-09
4hxt_A252 Crystal Structure Of Engineered Protein. Northeast 4e-07
4hxt_A252 Crystal Structure Of Engineered Protein. Northeast 9e-05
1fqv_A336 Insights Into Scf Ubiquitin Ligases From The Struct 8e-08
4db8_A252 Designed Armadillo-Repeat Protein Length = 252 6e-05
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272 Back     alignment and structure 
Iteration: 1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 38  VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD-LRAHKCDIAMAA 96
           V W SLPD+ ++ + SCL   +   +S  C+ W  L +   LW +LD  R    D++ + 
Sbjct: 7   VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSV 66
Query: 97  -------SLASRCMNLQKLRFRGAESADSIIHLQAR--NLRELSGDYCRKITDATLSVIV 147
                   + S+C  LQ L   G   +D I++  A+  NL  L+   C   ++  L  ++
Sbjct: 67  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 126
Query: 148 ARHEALESLQLG--PDFCERITSDAVKAIALCCPKLKKLRLSGIR-DICGDAINALAKLC 204
           +    L+ L L    DF E+    AV  ++     + +L LSG R ++    ++ L + C
Sbjct: 127 SSCSRLDELNLSWCFDFTEKHVQVAVAHVS---ETITQLNLSGYRKNLQKSDLSTLVRRC 183
Query: 205 PNLTDIGFLD 214
           PNL  +   D
Sbjct: 184 PNLVHLDLSD 193
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 Back     alignment and structure
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 Back     alignment and structure
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 Back     alignment and structure
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336 Back     alignment and structure
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query837
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-73
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 3e-63
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 4e-61
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 7e-61
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-58
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-19
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-08
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-71
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-62
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-60
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-58
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 6e-10
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-71
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 5e-62
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-60
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-60
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-56
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-52
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 1e-44
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 1e-29
3nmz_A458 APC variant protein; protein-protein complex, arma 6e-59
3nmz_A458 APC variant protein; protein-protein complex, arma 2e-42
3nmz_A458 APC variant protein; protein-protein complex, arma 4e-38
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-35
3nmz_A 458 APC variant protein; protein-protein complex, arma 3e-16
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 1e-58
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 1e-58
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 5e-37
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 9e-34
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-50
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-46
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 2e-45
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-37
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 4e-34
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 6e-33
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-10
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-49
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-43
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 6e-40
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 4e-39
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-32
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 1e-17
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 2e-47
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 3e-38
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 3e-35
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 4e-31
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 1e-19
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 9e-05
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-45
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 4e-44
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-43
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-31
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 3e-29
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-06
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 3e-42
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 3e-35
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 5e-32
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 4e-14
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-41
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 6e-38
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-37
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 6e-35
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 7e-32
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-28
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-11
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-07
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 7e-40
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 8e-35
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 6e-30
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 3e-15
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 2e-14
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 1e-38
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 3e-33
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-28
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 5e-16
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 3e-09
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 1e-30
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 8e-09
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 9e-30
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 4e-23
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 2e-22
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 2e-21
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 1e-19
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 1e-14
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 8e-12
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 1e-25
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-21
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 5e-20
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-18
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 1e-12
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 8e-09
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 9e-23
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 2e-17
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 3e-17
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 2e-15
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-13
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 2e-21
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 1e-16
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 1e-15
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 1e-12
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 3e-10
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 1e-04
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 2e-16
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 4e-09
3opb_A 778 SWI5-dependent HO expression protein 4; heat and a 1e-06
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 8e-13
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-11
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-08
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 4e-10
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-08
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-04
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 5e-09
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 9e-08
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 3e-04
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 1e-07
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-04
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 3e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-04
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 8e-04
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
 Score =  252 bits (645), Expect = 1e-73
 Identities = 92/411 (22%), Positives = 148/411 (36%), Gaps = 35/411 (8%)

Query: 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438
            G   +++L+  T           L      N E+          ++  GG + L+++ +
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK-------LIILASGGPQALVNIMR 192

Query: 439 SWR-EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497
           ++  E L    ++ +  LSV +    A+ E GG+  L +     ++ + +     L NLS
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252

Query: 498 VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGV 556
             +         G +  LV L+    S    V+  AAG L+NL   + K  M V   GG+
Sbjct: 253 --DAATKQEGMEGLLGTLVQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 557 HALV-MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615
            ALV  + R+   E + E A  AL +L +            +    L  +V+L   P   
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 616 VRQEAA-GALWNLSFDDRNREAIAAAGGVEALVVLAQSCSN------------------- 655
              +A  G + NL+    N   +   G +  LV L                         
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427

Query: 656 ASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN 715
               + E   GAL  L+    N I I     +   + L  S  E++   AAG L  LA +
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487

Query: 716 PGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIG 766
              A  I  EG    L  L  S    +A + AA+      D   D    + 
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS 538
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query837
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 100.0
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 100.0
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 100.0
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 100.0
3nmz_A458 APC variant protein; protein-protein complex, arma 100.0
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 100.0
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 100.0
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 100.0
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 100.0
3nmz_A458 APC variant protein; protein-protein complex, arma 100.0
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 100.0
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 100.0
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 100.0
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 100.0
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 100.0
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 100.0
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 100.0
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 100.0
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 100.0
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.98
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.97
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.97
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.97
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.97
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.97
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.96
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.95
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.94
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.92
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.91
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.91
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.91
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.89
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 99.89
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 99.87
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 99.86
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.85
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 99.85
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.84
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.81
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.79
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 99.73
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.73
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 99.72
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.61
3grl_A 651 General vesicular transport factor P115; vesicle t 99.6
3grl_A651 General vesicular transport factor P115; vesicle t 99.6
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.57
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.56
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.54
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.53
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.52
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.52
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.5
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.47
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.45
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 99.42
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 99.42
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.42
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.39
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.38
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.37
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.36
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.35
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 99.34
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.33
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 99.32
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.31
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.21
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.18
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 99.16
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.07
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.07
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.06
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.05
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.04
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.01
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.0
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.0
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.99
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 98.99
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 98.98
1qgr_A 876 Protein (importin beta subunit); transport recepto 98.98
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 98.95
1m9s_A605 Internalin B; cell invasion, GW domains, SH3 domai 98.91
4ezg_A197 Putative uncharacterized protein; internalin-A, le 98.91
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 98.91
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.9
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 98.89
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 98.88
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 98.88
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.88
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 98.87
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.87
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.85
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.85
1o6v_A466 Internalin A; bacterial infection, extracellular r 98.84
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.84
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 98.84
1o6v_A466 Internalin A; bacterial infection, extracellular r 98.82
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 98.77
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 98.76
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 98.76
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 98.73
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.73
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 98.73
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 98.73
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 98.72
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 98.72
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 98.71
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 98.71
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 98.71
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 98.71
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 98.7
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 98.68
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 98.68
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 98.67
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 98.65
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.64
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 98.63
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 98.63
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 98.62
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 98.62
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 98.61
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 98.6
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 98.6
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 98.59
1m9s_A605 Internalin B; cell invasion, GW domains, SH3 domai 98.59
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 98.59
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.59
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 98.59
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 98.58
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 98.58
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 98.58
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 98.57
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 98.55
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 98.54
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 98.54
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 98.54
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 98.53
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 98.53
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.53
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 98.53
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 98.52
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 98.52
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 98.51
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.51
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 98.49
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 98.48
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 98.48
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 98.47
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.47
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 98.46
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 98.46
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 98.45
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.44
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 98.43
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 98.43
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.42
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 98.42
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 98.4
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 98.39
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 98.39
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 98.39
3m19_A251 Variable lymphocyte receptor A diversity region; a 98.37
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.35
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 98.34
3m19_A251 Variable lymphocyte receptor A diversity region; a 98.33
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 98.33
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.33
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 98.3
3g06_A622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 98.3
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.3
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 98.29
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 98.28
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.27
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 98.26
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.26
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.25
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 98.25
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 98.22
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.21
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 98.21
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.2
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.18
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.17
3cvr_A571 Invasion plasmid antigen; leucine rich repeat and 98.17
3j0a_A844 TOLL-like receptor 5; membrane protein, leucine-ri 98.13
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 98.12
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 98.11
3j0a_A844 TOLL-like receptor 5; membrane protein, leucine-ri 98.1
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.1
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 98.09
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.04
3g06_A622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 98.04
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 98.01
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.01
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 97.99
3cvr_A571 Invasion plasmid antigen; leucine rich repeat and 97.99
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 97.97
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.95
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 97.95
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 97.91
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 97.91
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.91
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 97.86
3e6j_A229 Variable lymphocyte receptor diversity region; var 97.86
3e6j_A229 Variable lymphocyte receptor diversity region; var 97.84
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 97.84
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 97.8
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.78
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.73
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 97.71
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 97.71
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.71
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 97.71
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 97.71
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 97.7
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 97.65
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 97.65
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.61
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 97.57
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 97.52
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 97.51
1w8a_A192 SLIT protein; signaling protein, secreted protein, 97.4
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 97.34
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 97.28
1w8a_A192 SLIT protein; signaling protein, secreted protein, 97.26
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 97.24
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 97.11
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 97.08
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.07
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.02
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 96.92
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.9
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 96.83
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 96.79
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 96.78
4fdw_A401 Leucine rich hypothetical protein; putative cell s 96.7
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 96.41
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 96.19
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 96.13
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 96.12
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 96.06
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 96.04
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 96.01
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 95.97
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 95.68
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 95.45
2x1g_F971 Cadmus; transport protein, developmental protein, 95.11
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 94.88
2x19_B963 Importin-13; nuclear transport, protein transport; 94.88
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 94.76
2x19_B963 Importin-13; nuclear transport, protein transport; 94.43
4fdw_A401 Leucine rich hypothetical protein; putative cell s 94.32
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 94.12
3ebb_A304 Phospholipase A2-activating protein; armadillo rep 94.08
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 94.03
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 93.9
2x1g_F 971 Cadmus; transport protein, developmental protein, 93.75
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.72
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 93.58
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 93.55
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 93.52
3c2g_A619 SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev 93.45
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 93.34
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 93.31
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 93.16
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 92.72
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 92.64
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 92.64
4gt6_A394 Cell surface protein; leucine rich repeats, putati 92.48
3ebb_A304 Phospholipase A2-activating protein; armadillo rep 92.3
4gt6_A394 Cell surface protein; leucine rich repeats, putati 91.56
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 91.46
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 90.65
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 90.43
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 90.29
3c2g_A619 SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev 89.55
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 87.71
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 87.6
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 87.03
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 86.36
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 86.07
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 85.96
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 85.89
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 85.82
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 85.76
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 85.43
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 85.05
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 81.33
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
Probab=100.00  E-value=2.2e-36  Score=332.71  Aligned_cols=372  Identities=23%  Similarity=0.259  Sum_probs=317.0

Q ss_pred             HHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhcCChhHHHHHHHHHHHh
Q 003227          376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL  455 (837)
Q Consensus       376 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l  455 (837)
                      |+..+||.|+++|.++++++|..|+.+|.+++..+.++       +..+++.|+||.||.+|+++++.+|..|+++|.+|
T Consensus        45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~-------k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nL  117 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKV-------KTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI  117 (584)
T ss_dssp             CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-------HHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            56778999999999999999999999999998755543       77899999999999999999999999999999999


Q ss_pred             cc--ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHHHHHhh----------
Q 003227          456 SV--NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW----------  522 (837)
Q Consensus       456 ~~--~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~----------  522 (837)
                      +.  +++++..|++.|+|+.|+++|++ .+..+++.|+.+|++|+.+++++..+++ ++++.|++++..+          
T Consensus       118 a~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~  196 (584)
T 3l6x_A          118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNE  196 (584)
T ss_dssp             TSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC-----
T ss_pred             HccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccc
Confidence            98  48999999999999999999997 6889999999999999999999999996 5799999987311          


Q ss_pred             -----CCCCHHHHHHHHHHHHHhhcCC-CchHHHHhc-CcHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcCCC---
Q 003227          523 -----SSGGDGVLERAAGALANLAADD-KCSMEVALA-GGVHALVMLARSC-----KFEGVQEQAARALANLAAHGD---  587 (837)
Q Consensus       523 -----~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~-g~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~---  587 (837)
                           +..+++++++|+++|+||+.+. +.+..+++. |+++.|+.++++.     .+...++.|+++|+||+...+   
T Consensus       197 ~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~  276 (584)
T 3l6x_A          197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI  276 (584)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred             cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence                 2346799999999999999965 568999987 5678999999752     346788999999999997521   


Q ss_pred             -------------------CCCcccchhhccchHHHHHHHcC-CCCHHHHHHHHHHHHhhcCCh-----hhHHHHHHcCC
Q 003227          588 -------------------SNSNNSAVGQEAGALEALVQLTR-SPHEGVRQEAAGALWNLSFDD-----RNREAIAAAGG  642 (837)
Q Consensus       588 -------------------~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~Ls~~~-----~~~~~l~~~g~  642 (837)
                                         ........+.+.++++.|+.+|+ +.++.+++.|+++|.||+...     ..+..+.+.++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g  356 (584)
T 3l6x_A          277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA  356 (584)
T ss_dssp             TTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHH
T ss_pred             cchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc
Confidence                               01122233445577888999995 468999999999999998753     23445566789


Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccC--------CHHHHHHHHHHHHHHcC
Q 003227          643 VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSE--------AEDVHETAAGALWNLAF  714 (837)
Q Consensus       643 i~~L~~ll~~~~~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~--------~~~v~~~a~~~L~~l~~  714 (837)
                      ++.|+.+|.+   ++..++..|+++|.|++.++.++..| ..|+++.|+++|.++        +++++..|+++|.|++.
T Consensus       357 lp~Lv~LL~s---~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a  432 (584)
T 3l6x_A          357 LSAIADLLTN---EHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA  432 (584)
T ss_dssp             HHHHHHGGGC---SCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcC---CCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence            9999999988   89999999999999999988888766 678999999999765        47899999999999965


Q ss_pred             -CcccHHHHHHcCCHHHHHHHHhcC-CcHHHHHHHHHHHHHhhCCCC
Q 003227          715 -NPGNALRIVEEGGVPALVHLCSSS-GSKMARFMAALALAYMFDGRM  759 (837)
Q Consensus       715 -~~~~~~~i~~~~~i~~L~~ll~~~-~~~~~~~~a~~aL~~l~~~~~  759 (837)
                       ++.++..+.+.|+++.|+.++.++ .++.+++.|+.+|.++.....
T Consensus       433 ~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          433 ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence             788999999999999999999885 468999999999999976443
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Back     alignment and structure
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 837
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 5e-22
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 5e-21
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 3e-16
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 6e-16
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 3e-12
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 1e-11
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 4e-10
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 8e-20
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 8e-19
d1jdha_ 529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 2e-16
d1jdha_ 529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 9e-13
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 7e-12
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 3e-11
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 2e-17
d1q1sc_ 434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 3e-11
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 2e-09
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 4e-09
d1q1sc_ 434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 3e-07
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 3e-15
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 4e-11
d1wa5b_ 503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 6e-05
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 4e-12
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 2e-07
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 4e-06
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-08
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 6e-07
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 1e-06
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 1e-06
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 7e-06
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 0.002
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 0.002
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 0.002
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (242), Expect = 5e-22
 Identities = 73/401 (18%), Positives = 131/401 (32%), Gaps = 42/401 (10%)

Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
            +  + S  E  Q   A  +      ++          + V + GGI  L+DL +S  + 
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESA-------KQQVYQLGGICKLVDLLRSPNQN 59

Query: 444 LQSEAAKAIANLSVNAKVAK-AVAEEGGINILAVLARSMNRL-VAEEAAGGLWNLSVGEE 501
           +Q  AA A+ NL   +   K     + GI     L R      + ++  G LWNLS  +E
Sbjct: 60  VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119

Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDG------------VLERAAGALANLAADDK-CSM 548
            K  +           +I  +S   DG            V   A G L NL++ D     
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 549 EVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGAL------ 602
               +G + +L+   ++C      +  +        H  S   ++ V      L      
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239

Query: 603 -----EALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNAS 657
                 +    +    + +       L     + +    +  +  +   + L        
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK-- 297

Query: 658 PGLQERAAGALWGLSVSEANCI------AIGREGGVAPLIALARSEAEDVHETAAGALWN 711
               E  AGAL  L+ S+             +E G+  +  L +S   DV  + A  L N
Sbjct: 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357

Query: 712 LAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALA 752
           ++ +P     +      P +  L +S     +     L+ A
Sbjct: 358 MSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSA 397
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query837
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.97
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.96
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.96
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.96
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.94
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.9
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.88
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.87
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.73
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.7
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.41
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.36
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.36
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.31
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.31
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.3
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.27
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.15
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.14
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.13
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.04
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.86
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.75
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.73
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.73
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.72
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 98.69
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 98.68
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 98.64
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 98.64
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 98.62
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.61
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.61
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 98.57
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.56
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 98.56
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.55
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 98.52
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.51
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 98.49
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.47
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.45
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.38
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 98.32
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.32
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.23
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.21
d1p9ag_266 von Willebrand factor binding domain of glycoprote 98.18
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.12
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.1
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.1
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.05
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.02
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.02
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 98.01
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.99
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 97.95
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 97.93
d1p9ag_266 von Willebrand factor binding domain of glycoprote 97.76
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.73
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 97.7
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 97.67
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.57
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 97.43
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 97.28
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 97.11
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.04
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 97.02
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 97.0
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.85
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 96.82
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 96.8
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 96.47
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.19
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 96.08
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 95.77
d2ifga3156 High affinity nerve growth factor receptor, N-term 95.74
d2ifga3156 High affinity nerve growth factor receptor, N-term 95.6
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 95.47
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 95.37
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 95.22
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 94.93
d2bnxa1343 Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { 82.97
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-29  Score=284.24  Aligned_cols=386  Identities=25%  Similarity=0.262  Sum_probs=327.2

Q ss_pred             HHHHhhhcCcCchhhHHHhhhHHHHHHhhhcCCHHHHHHHHHHhhccccccCcccccchhhHHHHHHhCcHHHHHHHHhc
Q 003227          360 ILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS  439 (837)
Q Consensus       360 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~  439 (837)
                      .+.+++. +++....+++.+|+|.|+++|++++++++..|+.+|++++.+++..       +..+.+.|+++.|+.+|++
T Consensus        83 ~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~-------~~~~~~~g~i~~Lv~lL~~  154 (529)
T d1jdha_          83 TLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNK  154 (529)
T ss_dssp             HHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-------HHHHHHHTHHHHHHHGGGC
T ss_pred             HHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchh-------hhHHHhcCCchHHHHHHHc
Confidence            3444443 4456677788889999999999999999999999999998765543       5678899999999999999


Q ss_pred             CChhHHHHHHHHHHHhcc-ChHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCccchHHHHhhCCHHHHHH
Q 003227          440 WREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD  517 (837)
Q Consensus       440 ~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~  517 (837)
                      ++++++..++.+|.+++. +++.+..+.+.|+++.++.+++. ....++..++.++.+++.+++++..+.+.|+++.|+.
T Consensus       155 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~  234 (529)
T d1jdha_         155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL  234 (529)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHT
T ss_pred             cChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHH
Confidence            999999999999999997 67888999999999999999976 4578999999999999999999999999888888776


Q ss_pred             HHHh------------------------------------hCCCCHHHHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHH
Q 003227          518 LIFK------------------------------------WSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALV  560 (837)
Q Consensus       518 lL~~------------------------------------~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~  560 (837)
                      ++..                                    ..++++.++..++++|++++.+ ++++..+.+.|+++.++
T Consensus       235 ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li  314 (529)
T d1jdha_         235 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV  314 (529)
T ss_dssp             TTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred             HhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHH
Confidence            6632                                    1235566777888888888764 45667788889999999


Q ss_pred             HHHhc-CCCHHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHcCCC-CHHHHHHHHHHHHhhcCChhhHHHHH
Q 003227          561 MLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP-HEGVRQEAAGALWNLSFDDRNREAIA  638 (837)
Q Consensus       561 ~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~l~  638 (837)
                      ..+.. .+.++++..++.+|.+++......+..+..+...++++.++.++..+ +..++..+++++++++.+++++..+.
T Consensus       315 ~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~  394 (529)
T d1jdha_         315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR  394 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred             HHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhh
Confidence            97753 44478999999999999976443444555666789999999999876 45688899999999999999999999


Q ss_pred             HcCCHHHHHHHHhhcC-------------------CCCHHHHHHHHHHHHhcccCccchhhhhccCChHHHHHHhccCCH
Q 003227          639 AAGGVEALVVLAQSCS-------------------NASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAE  699 (837)
Q Consensus       639 ~~g~i~~L~~ll~~~~-------------------~~~~~v~~~A~~~L~~l~~~~~~~~~l~~~~~i~~L~~lL~s~~~  699 (837)
                      +.|+++.|++++.+..                   ...+++.+.++.++..++..+.++..+.+.|+++.|+++|+++++
T Consensus       395 ~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~  474 (529)
T d1jdha_         395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE  474 (529)
T ss_dssp             HTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             hcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCH
Confidence            9999999999997511                   012456777888999999888888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 003227          700 DVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYM  754 (837)
Q Consensus       700 ~v~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~aL~~l  754 (837)
                      .++..|+++|.+|+.+++.+..+.+.|+++.|++++.+++ +.++..|+.+|..+
T Consensus       475 ~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n-~~v~~~a~~aL~~l  528 (529)
T d1jdha_         475 NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999875 89999999999876
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure