Citrus Sinensis ID: 003235

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------
MEPHYIRPRLYGPQQHQPVKMTIPPSQHTDNDRSSGELRALDCNLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECFEQGSSSSKAGADDLEGQNAARTLLVELADCVVDLQTGVSDSKQQMQQAVYNRPKLEPVYTCNMNQSSSLCSSYSNTDRNRASCSCGEMAIGVGTGGLGTNTLSMEGPSEESPCYCINNSSWLASDQSKHCSSMDSSCMVNDWGRCGMPALSWGGRVVDRRQVNGNAKGNPGVSGEEYDAFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQQIVADTCKNCCRISMACTCRQPFGFSHGVTAGGYYMQDHDQSNSPGSIGNIYVADSSQGEANGLFRPVRVHVRGQIDGLAGIGRGTTFVPAAAWPPTRFVFSRVPFGMGNRNCQQSPANDDAEARTDHSGDLSGDGLTAIVGLSQGGNDTANVHGDEAELQSRLSSTSISGPSTSGISMQMLESPEHAVGIEWENANGSSISLDMKTPLSHFPPFRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELADILQNGTLRVAAVVQLV
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEccEEEEEEEEEEcccHHHHHHHccccccccccEEEEEcccccccHHHHHHHHHccccccEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccEEEcccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccccccEEEEEEEEcccccEEEcccccccccEEccccEEEEcccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccEEEcccEEEEcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccEEccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEEEEccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEccccccccccccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEcccccEEEEEEEEccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEcc
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEcccEEcccEEEEEccHHHHHHHcccHHHHcccEEEEEEccccccHHHHHHHHHHHHccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcEEEEcHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcccccccccHEEEcccccccccccccccEEEcccccccccEEEEEEEcccccccccccccccEEEccEEEEccccccccccHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHHHcHcccEEcccccccccccEEccccccccEEEcccccccccccccEEEEcccccccccccccEEEEEccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEccccccccccccEEEEEEEcHHEccccccccccHEEEcccEHEEEEEcccccccccccHHHHHHHHHHHcccccccEEEEEEccccHEEEEEEEEcccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEEEEc
mephyirprlygpqqhqpvkmtippsqhtdndrssgelraldcnlTSLCDhiqmegfnsgsfSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDhwkeasapvvtlhvddknvnGEAIAMALAYLYghrpklndaNAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAenqdygihgeRVRNACWGYLCQSGAVelkevlpklspqTLHALLtsdelwvpseEQRFELALYAFLAKGafcktecfeqgsssskagaddleGQNAARTLLVELADCVVDlqtgvsdskQQMQQAVynrpklepvytcnmnqssslcssysntdrnrascscgemaigvgtgglgtntlsmegpseespcycinnsswlasdqskhcssmdsscmvndwgrcgmpalswggrvvdrrqvngnakgnpgvsgeeyDAFVNIFEGGSLLYCNMSFEALLNVRKQLEElgfpckavndGLWLQMLLSQRVQQIVADTCKNccrismactcrqpfgfshgvtaggyymqdhdqsnspgsigniyvadssqgeanglfrpvrVHVRGqidglagigrgttfvpaaawpptrfvfsrvpfgmgnrncqqspanddaeartdhsgdlsgdGLTAIVGLsqggndtanvhgdeaelqsrlsstsisgpstsgismqmlespehavgiewenangssisldmktplshfppfrfgiefedvhrlsdgqvkhspeyfyagSLWKVSVQAfndedpqgrrtLGLFLHRRKAEITDSYRKVHMYVDSREKVTARYQLicpskrevmvfgsfkqrgtllpkapkgwgwrTALLFDELADILQNGTLRVAAVVQLV
mephyirprlygpqqhqpvkMTIPPSQHTDNDRSSGELRALDCNLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECFEQGSSSSKAGADDLEGQNAARTLLVELADCVVDLQtgvsdskqqMQQAVYNRPKLEPVYTCNMNQSSSLCSSYSNTDRNRASCSCGEMAIGVGTGGLGTNTLSMEGPSEESPCYCINNSSWLASDQSKHCSSMDSSCMVNDWGRCGMPALSWGGRVVDRRQVNgnakgnpgvsgeeYDAFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQQIVADTCKNCCRISMACTCRQPFGFSHGVTAGGYYMQDHDQSNSPGSIGNIYVADSSQGEANGLFRPVRVHVRGQIDGLAGIGRGTtfvpaaawpptRFVFSRVPFGMGNRNCQQSPANDDAEARTDHSGDLSGDGLTAIVGLSQGGNDTANVHGDEAELQSRLSSTSISGPSTSGISMQMLESPEHAVGIEWENANGSSISLDMKTPLSHFPPFRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGrrtlglflhrrkaeitdsyrkvhmyvdsrekVTARYQLicpskrevmvfgsfkqrgtllpkapkgWGWRTALLFDELADILQNGTLRVAAVVQLV
MEPHYIRPRLYGPQQHQPVKMTIPPSQHTDNDRSSGELRALDCNLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECFEQGSSSSKAGADDLEGQNAARTLLVELADCVVDLQTGVSDSKQQMQQAVYNRPKLEPVYTCNMNQssslcssysNTDRNRASCSCGEMAIgvgtgglgtntlSMEGPSEESPCYCINNSSWLASDQSKHCSSMDSSCMVNDWGRCGMPALSWGGRVVDRRQVNGNAKGNPGVSGEEYDAFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQQIVADTCKNCCRISMACTCRQPFGFSHGVTAGGYYMQDHDQSNSPGSIGNIYVADSSQGEANGLFRPVRVHVRGQIDGLAGIGRGTTFVPAAAWPPTRFVFSRVPFGMGNRNCQQSPANDDAEARTDHSGDLSGDGLTAIVGLSQGGNDTANVHGDEAELQSRLsstsisgpstsgisMQMLESPEHAVGIEWENANGSSISLDMKTPLSHFPPFRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELADILQNGTLRVAAVVQLV
**************************************RALDCNLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECF*******************ARTLLVELADCVVDLQTGV****************LEPVYTCN********************CSCGEMAIGVGTGGLG**************CYCINNSSWLA***********SSCMVNDWGRCGMPALSWGGRVVDRRQVNG*******VSGEEYDAFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQQIVADTCKNCCRISMACTCRQPFGFSHGVTAGGYYMQ**********IGNIYVADS**GEANGLFRPVRVHVRGQIDGLAGIGRGTTFVPAAAWPPTRFVFSRVPFGM**********************************************************************************IEW***********MKTPLSHFPPFRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELADILQNGTLRVAAVVQ**
**********************************************SLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHW********TLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECFEQGSSSSKAGADDLEGQNAARTLLVELADCVVDLQTGV*******************************CSSYSNTDRNRASCSCGEMAIGVGTGGLGTNTLSMEGPSEESPCYCINNSSWLASDQSKHC**MD**CMVNDWGRCGMPALSWGGRVVDRRQVNGNAKGNPGVSGEEYDAFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQQIVADTCKNCCRISMACTCRQPFGF**GVT***************************************VHVRGQIDGLAGIGRGTTFVPAAAWPPTRFVFSRVPFGM********************SGDLSGDGLT*************************************************************SISLDMKTPLSHFPPFRFGIEFEDVHRL****VKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAE**DSYRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELADILQNGTLRVAAVVQLV
MEPHYIRPRLYGPQQHQPVKMTIP***********GELRALDCNLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTE****************EGQNAARTLLVELADCVVDLQTGVSDSKQQMQQAVYNRPKLEPVYTCNMNQSSSLCSSYSNTDRNRASCSCGEMAIGVGTGGLGTNTLSMEGPSEESPCYCINNSSWL*************SCMVNDWGRCGMPALSWGGRVVDRRQVNGNAKGNPGVSGEEYDAFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQQIVADTCKNCCRISMACTCRQPFGFSHGVTAGGYYMQDHDQSNSPGSIGNIYVADSSQGEANGLFRPVRVHVRGQIDGLAGIGRGTTFVPAAAWPPTRFVFSRVPFGMGNRNCQ***************GDLSGDGLTAIVGLSQGGNDTANVHG*******************SGISMQMLESPEHAVGIEWENANGSSISLDMKTPLSHFPPFRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELADILQNGTLRVAAVVQLV
**************************************RALDCNLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECFEQGSSSSKAGADDLEGQNAARTLLVELADCVVDLQTGVSDSKQQMQQAVYNRPKLEPVYTCNMNQSSSLCSSYSNTDRNRASCSCGEMAIGVGTGGLGTNTLSMEGPSEESPCYCINNSSWLASDQSKHCSSMDSSCMVNDWGRCGMPALSWGGRVVDRRQVNGNAKGNPGVSGEEYDAFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQQIVADTCKNCCRISMACTCRQPFGFSHGVTAGGYYMQDHDQSNSPGSIGNIYVADSSQGEANGLFRPVRVHVRGQIDGLAGIGRGTTFVPAAAWPPTRFVFSRVPFGMGNRNCQQSPANDDAEARTDHSGDLSGDGLTAIVGLS*******************************************AVGIEWENANGSSISLDMKTPLSHFPPFRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELADILQNGTLRVAAVVQLV
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MEPHYIRPRLYGPQQHQPVKMTIPPSQHTDNDRSSGELRALDCNLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECFEQGSSSSKAGADDLEGQNAARTLLVELADCVVDLQTGVSDSKQQMQQAVYNRPKLEPVYTCNMNQSSSLCSSYSNTDRNRASCSCGEMAIGVGTGGLGTNTLSMEGPSEESPCYCINNSSWLASDQSKHCSSMDSSCMVNDWGRCGMPALSWGGRVVDRRQVNGNAKGNPGVSGEEYDAFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQQIVADTCKNCCRISMACTCRQPFGFSHGVTAGGYYMQDHDQSNSPGSIGNIYVADSSQGEANGLFRPVRVHVRGQIDGLAGIGRGTTFVPAAAWPPTRFVFSRVPFGMGNRNCQQSPANDDAEARTDHSGDLSGDGLTAIVGLSQGGNDTANVHGDEAELQSRLSSTSISGPSTSGISMQMLESPEHAVGIEWENANGSSISLDMKTPLSHFPPFRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELADILQNGTLRVAAVVQLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query837 2.2.26 [Sep-21-2011]
Q920G9524 Germ cell-less protein-li yes no 0.232 0.372 0.264 4e-13
Q96IK5515 Germ cell-less protein-li yes no 0.232 0.378 0.264 6e-13
Q8NEA9526 Putative germ cell-less p no no 0.232 0.370 0.25 6e-12
P59280629 Kelch-like protein 8 OS=M no no 0.338 0.449 0.242 2e-11
Q9P2G9620 Kelch-like protein 8 OS=H no no 0.336 0.454 0.241 1e-10
Q01820569 Protein germ cell-less OS yes no 0.237 0.349 0.228 6e-10
E7F6F9601 Kelch-like protein 3 OS=D no no 0.178 0.247 0.302 7e-10
Q3ZCT8623 Kelch repeat and BTB doma no no 0.198 0.266 0.267 1e-09
Q8NFY9601 Kelch repeat and BTB doma no no 0.210 0.292 0.278 3e-09
F1MBP6587 Kelch-like protein 3 OS=B no no 0.189 0.270 0.284 4e-09
>sp|Q920G9|GMCL1_MOUSE Germ cell-less protein-like 1 OS=Mus musculus GN=Gmcl1 PE=1 SV=2 Back     alignment and function desciption
 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 9/204 (4%)

Query: 44  NLTSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVV 103
            L S   +I    F +G  SDI +  +G  + LH++ L +S YF +M    WKE+S  ++
Sbjct: 87  KLKSTSKYIYQTLFLNGENSDIKICALGEEWSLHKIYLCQSGYFSSMFSGSWKESSMNII 146

Query: 104 TLHVDDKNVNGEAIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISEL 163
            L + D+N++ EA+ +A   LY     +  +    +LAAA  L L  L   C + +   +
Sbjct: 147 ELEIPDQNIDIEALQVAFGSLYRDDVLIKPSRVVAILAAACMLQLDGLIQQCGETMKETI 206

Query: 164 WTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSGAV-ELKEVLPKLSPQTLHALLTSD 222
               +  Y  +     YG+  + V+  C  +L  +    +  E+  +LS   +  L+ S 
Sbjct: 207 SVRTVCGY--YTSAGTYGL--DSVKKKCLEWLLNNLMTHQSVELFKELSINVMKQLIGSS 262

Query: 223 ELWVPSEEQRFELALYAFLAKGAF 246
            L+V     + E+ +Y  L K  F
Sbjct: 263 NLFV----MQVEMDVYTALKKWMF 282
Possible function in spermatogenesis. Enhances the degradation of MDM2 and increases the amount of p53 probably by modulating the nucleocytoplasmic transport.
Mus musculus (taxid: 10090)
>sp|Q96IK5|GMCL1_HUMAN Germ cell-less protein-like 1 OS=Homo sapiens GN=GMCL1 PE=1 SV=1 Back     alignment and function description
>sp|Q8NEA9|GMCLL_HUMAN Putative germ cell-less protein-like 1-like OS=Homo sapiens GN=GMCL1P1 PE=1 SV=1 Back     alignment and function description
>sp|P59280|KLHL8_MOUSE Kelch-like protein 8 OS=Mus musculus GN=Klhl8 PE=2 SV=2 Back     alignment and function description
>sp|Q9P2G9|KLHL8_HUMAN Kelch-like protein 8 OS=Homo sapiens GN=KLHL8 PE=2 SV=4 Back     alignment and function description
>sp|Q01820|GCL_DROME Protein germ cell-less OS=Drosophila melanogaster GN=gcl PE=2 SV=1 Back     alignment and function description
>sp|E7F6F9|KLHL3_DANRE Kelch-like protein 3 OS=Danio rerio GN=klhl3 PE=3 SV=1 Back     alignment and function description
>sp|Q3ZCT8|KBTBC_HUMAN Kelch repeat and BTB domain-containing protein 12 OS=Homo sapiens GN=KBTBD12 PE=2 SV=2 Back     alignment and function description
>sp|Q8NFY9|KBTB8_HUMAN Kelch repeat and BTB domain-containing protein 8 OS=Homo sapiens GN=KBTBD8 PE=2 SV=2 Back     alignment and function description
>sp|F1MBP6|KLHL3_BOVIN Kelch-like protein 3 OS=Bos taurus GN=KLHL3 PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query837
449513350865 PREDICTED: uncharacterized protein LOC10 0.991 0.959 0.719 0.0
449432856865 PREDICTED: uncharacterized protein LOC10 0.991 0.959 0.719 0.0
255551761846 conserved hypothetical protein [Ricinus 0.945 0.934 0.742 0.0
225432264829 PREDICTED: uncharacterized protein LOC10 0.940 0.949 0.738 0.0
356519968870 PREDICTED: uncharacterized protein LOC10 0.983 0.945 0.687 0.0
356564591853 PREDICTED: uncharacterized protein LOC10 0.965 0.947 0.685 0.0
357478787863 Kelch-like protein diablo [Medicago trun 0.959 0.930 0.674 0.0
240255884836 BTB/POZ domain-containing protein [Arabi 0.910 0.911 0.622 0.0
326516016824 predicted protein [Hordeum vulgare subsp 0.921 0.935 0.600 0.0
357126670810 PREDICTED: uncharacterized protein LOC10 0.903 0.933 0.598 0.0
>gi|449513350|ref|XP_004164303.1| PREDICTED: uncharacterized protein LOC101231103 [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1294 bits (3348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/872 (71%), Positives = 718/872 (82%), Gaps = 42/872 (4%)

Query: 1   MEPHYIRPRLYGPQQHQPVKMTIPPSQHTDNDRSSGELRALDCNLTSLCDHIQMEGFNSG 60
           ME  Y     YG      +KMTIPPSQH DNDRS+ ELRALDCNLTSLCDHIQ+EGFNSG
Sbjct: 1   METQYSASHSYG----SAMKMTIPPSQHADNDRSTTELRALDCNLTSLCDHIQIEGFNSG 56

Query: 61  SFSDIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMA 120
           +FSDI+VH MGSTYHLHRLILSRSSYFRNMLH  WKEASAPV+TLHVDDKNVNGEAIAMA
Sbjct: 57  AFSDIVVHAMGSTYHLHRLILSRSSYFRNMLHGPWKEASAPVLTLHVDDKNVNGEAIAMA 116

Query: 121 LAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDY 180
           LAYLYGH PKLND NAFRVLAAASFLDLQDLCAICTDFII+ELWTSN LAYQ+FAE+QDY
Sbjct: 117 LAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIIAELWTSNFLAYQIFAESQDY 176

Query: 181 GIHGERVRNACWGYLCQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAF 240
           GIHGERVR ACWGYLCQSGA+ELKEVLPKLS QTL+ALLT+DELWVPSEE+RFELALYAF
Sbjct: 177 GIHGERVRIACWGYLCQSGAIELKEVLPKLSSQTLYALLTTDELWVPSEERRFELALYAF 236

Query: 241 LAKGAFCKTECFEQGSSSSK--------------------------AGADDLEGQNAART 274
           LAKGA CK E  E G SSS+                          +  D LE   +A  
Sbjct: 237 LAKGALCKDEPSEPGCSSSEIEISKAQETCSIDSTNERLESELGHLSLKDGLEVHKSAHN 296

Query: 275 LLVELADCVVDLQTGVSDSKQQMQQAVYNRPKLEPVYTCNMNQSSSLCSSYSNTDRNRAS 334
            L +L DCVVD QTG S+SKQ+MQ+  Y++  ++P + CN+  SS+L +S+S+T+   +S
Sbjct: 297 HLHQLPDCVVDFQTGASNSKQKMQEVTYSQSNVKPPFLCNVEGSSTLNNSFSDTNGVLSS 356

Query: 335 CSCGEMAIGVGTGGLGTNTLSMEGPSEESPCYCINNSSWLASDQSKHCSSMDSSCM---V 391
           CS   + I VG  GLG + ++MEGPSEE  CY ++N++WL ++Q+ HCS+++SS      
Sbjct: 357 CSYINLPITVGVSGLGASGVAMEGPSEEG-CYQLDNNTWLGTNQTSHCSTVNSSTNGLPS 415

Query: 392 NDWGRCGMPALSWGGRVVDRRQVNGNAKGNPGVSGEEYDAFVNIFEGGSLLYCNMSFEAL 451
           NDWGRCGMPA+SWGGRVV RRQ+   AKGN    GE+YD F ++FEGGSLLYCNM+FEAL
Sbjct: 416 NDWGRCGMPAVSWGGRVVGRRQLKSYAKGNFSARGEDYDVFDSLFEGGSLLYCNMTFEAL 475

Query: 452 LNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQQIVADTCKNCCRISMACTCRQPFGFSHG 511
           LN+RKQLEELGFPCKAVNDGLWLQMLL QRVQ+IVADTCKNCC  S+AC CRQPF F+ G
Sbjct: 476 LNMRKQLEELGFPCKAVNDGLWLQMLLRQRVQEIVADTCKNCCLTSLACACRQPFAFARG 535

Query: 512 VTAGGYYMQDHDQSNSPGSIGNIYVADSSQGEANGLFRPVRVHVRGQIDGLAGIGRGTTF 571
           V A GYY+ +HDQ++SPGS+GNIYVA+SSQG+ NG F+PVRVHVRG ++GLAGIGRG TF
Sbjct: 536 VNASGYYINEHDQNSSPGSVGNIYVAESSQGDGNGPFKPVRVHVRGPVEGLAGIGRGATF 595

Query: 572 VPAAAWPPTRFVFSRVPFGMGNRNCQQSPANDDAEARTDHSGDLSGDGLTAIVGLSQGGN 631
           VPA AWPPTRFVFSRVP G+GNRNC QS ANDD+EAR DH+ DLSGDGLTA+VGLSQGG 
Sbjct: 596 VPATAWPPTRFVFSRVPIGVGNRNCHQSLANDDSEARADHNADLSGDGLTALVGLSQGGG 655

Query: 632 DTANVHGD------EAELQSRLSSTSISGPSTSGISMQMLESPEHAVGIEWENANGSSIS 685
            + N  G+      + ELQSR+S+  ++GPS +GI +QML+SP+HA+GIEWEN N S+I 
Sbjct: 656 SSMNAQGESTERGYDMELQSRISAC-MAGPSATGIPVQMLQSPDHALGIEWENGN-STIV 713

Query: 686 LDMKTPLSHFPPFRFGIEFEDVHRLSDGQVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRT 745
           LDMKTPLSHFPPFRFG++FEDVHRL+DGQVKHSPE+FYAGSLWKVS QAFNDEDPQGRRT
Sbjct: 714 LDMKTPLSHFPPFRFGVQFEDVHRLNDGQVKHSPEFFYAGSLWKVSAQAFNDEDPQGRRT 773

Query: 746 LGLFLHRRKAEITDSYRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQRGTLLPKAP 805
           LGLFLHRRKAEI+DS RKVHM+VDSREKVTARYQLICPSKREVMVFG+ KQ GTLLPKAP
Sbjct: 774 LGLFLHRRKAEISDSLRKVHMFVDSREKVTARYQLICPSKREVMVFGNSKQTGTLLPKAP 833

Query: 806 KGWGWRTALLFDELADILQNGTLRVAAVVQLV 837
           KGWGWRTALLFDELAD LQ+G LRVAAVVQLV
Sbjct: 834 KGWGWRTALLFDELADFLQHGALRVAAVVQLV 865

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449432856|ref|XP_004134214.1| PREDICTED: uncharacterized protein LOC101204673 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255551761|ref|XP_002516926.1| conserved hypothetical protein [Ricinus communis] gi|223544014|gb|EEF45540.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225432264|ref|XP_002275833.1| PREDICTED: uncharacterized protein LOC100254500 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356519968|ref|XP_003528640.1| PREDICTED: uncharacterized protein LOC100806711 [Glycine max] Back     alignment and taxonomy information
>gi|356564591|ref|XP_003550535.1| PREDICTED: uncharacterized protein LOC100795961 [Glycine max] Back     alignment and taxonomy information
>gi|357478787|ref|XP_003609679.1| Kelch-like protein diablo [Medicago truncatula] gi|355510734|gb|AES91876.1| Kelch-like protein diablo [Medicago truncatula] Back     alignment and taxonomy information
>gi|240255884|ref|NP_193319.6| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|332658258|gb|AEE83658.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|326516016|dbj|BAJ88031.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|357126670|ref|XP_003565010.1| PREDICTED: uncharacterized protein LOC100840904 isoform 2 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query837
TAIR|locus:2130829836 AT4G15840 "AT4G15840" [Arabido 0.956 0.958 0.611 2.7e-267
UNIPROTKB|Q96IK5515 GMCL1 "Germ cell-less protein- 0.255 0.415 0.270 6.7e-13
MGI|MGI:1345156524 Gmcl1 "germ cell-less homolog 0.255 0.408 0.270 6.9e-13
RGD|1359265524 Gmcl1 "germ cell-less, spermat 0.255 0.408 0.270 6.9e-13
UNIPROTKB|F1MJQ9526 GMCL1 "Uncharacterized protein 0.255 0.406 0.270 1.5e-12
ZFIN|ZDB-GENE-030131-865503 gmcl1 "germ cell-less homolog 0.231 0.385 0.261 2.8e-11
UNIPROTKB|Q8NEA9526 GMCL1P1 "Putative germ cell-le 0.231 0.368 0.256 1.8e-10
ZFIN|ZDB-GENE-040426-1185601 zgc:63606 "zgc:63606" [Danio r 0.235 0.327 0.292 1.3e-09
UNIPROTKB|Q9U1W5496 gcl-1 "Protein GCL-1" [Caenorh 0.216 0.364 0.248 2.4e-08
FB|FBgn0005695569 gcl "germ cell-less" [Drosophi 0.235 0.346 0.228 5.1e-08
TAIR|locus:2130829 AT4G15840 "AT4G15840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2571 (910.1 bits), Expect = 2.7e-267, P = 2.7e-267
 Identities = 516/844 (61%), Positives = 621/844 (73%)

Query:    14 QQHQPVKMTIPPSQ----------HTDNDRSSGELRALDCNLTSLCDHIQMEGFNSGSFS 63
             Q H  ++MT+PP            H ++D+S+ ELR+LDCNLTSLCDHIQ EGF SG+FS
Sbjct:    16 QHHHQMRMTVPPPPSPQPSPPVLPHAESDQSTSELRSLDCNLTSLCDHIQSEGFGSGAFS 75

Query:    64 DIIVHVMGSTYHLHRLILSRSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAY 123
             D++V  MGS+YHLHRLILSRSSYFR ML   WKEAS+PVV L VDDKNVNG+AI++ALAY
Sbjct:    76 DVVVKAMGSSYHLHRLILSRSSYFRTMLQGPWKEASSPVVNLLVDDKNVNGDAISVALAY 135

Query:   124 LYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIH 183
             LYG+ PKL+D NAFRVLAAASFLDLQDLCAICTDFIISEL TSN LAYQVFAE+QDYGIH
Sbjct:   136 LYGYHPKLDDDNAFRVLAAASFLDLQDLCAICTDFIISELRTSNFLAYQVFAESQDYGIH 195

Query:   184 GERVRNACWGYLCQSGAVELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAK 243
             GERVRNACWGYLCQSGAVEL+E+LPKLS QTL ALLTSDELWVPSEE+RFELALYAF+A 
Sbjct:   196 GERVRNACWGYLCQSGAVELREMLPKLSAQTLCALLTSDELWVPSEEKRFELALYAFIAN 255

Query:   244 GAFCKTECFEQGSSSSKAGADDLEGQ-NAARTLLVELADCVVDLQTGVSDSKQQMQQAVY 302
              A   ++   Q S   +  +  L+   +  + ++ + +   +D + G  D +  ++ A  
Sbjct:   256 SALSNSDHSNQDSRFERETSFPLDSAISKGKNVMDDFSFRSLDCKLGHLDIEADLRDASD 315

Query:   303 NR--PKLEPV--YTCNMNQXXXXXXXXXNTDRNRASCSCGEMAIXXXXXXXXXXXXSMEG 358
             +   P  E V  +   ++          N+  N     C  +              ++EG
Sbjct:   316 DVIVPLTEGVIDFQRGVSGSNLVFQQSSNSQTNFGR-PCTSVV-----DKTEGSVVAIEG 369

Query:   359 PSEESPCYCINNSSWLASDQSKHCSSMDSSC---MVNDWGRCGMPALSWGGRVVDRRQVN 415
             PSEE+  Y ++N SWL+   S++  ++ SS    +VN+WG CG+ AL+WGGRVV  RQ  
Sbjct:   370 PSEEA--YHLSNDSWLSGADSRNSPTLGSSSDGFVVNEWGNCGVSALTWGGRVVGTRQGT 427

Query:   416 GNAKGNPGVSGEEYDAFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQ 475
             G+ KG  G + EEY AFVN FEGGSLLYCNMSFE LLN RK+LEELGFPCKAVNDGLWLQ
Sbjct:   428 GSVKGKYGFTEEEYSAFVNTFEGGSLLYCNMSFEILLNARKELEELGFPCKAVNDGLWLQ 487

Query:   476 MLLSQRVQQIVADTCKNCCRISMACTCRQPFGFSHGVTAGGYYMQDHDQSNSPGSIGNIY 535
             MLLSQRVQ++ A+TCK CC IS+AC C+Q FG SHG T   YY Q++ Q+N  G + N+Y
Sbjct:   488 MLLSQRVQEVAANTCKRCCLISIACACKQGFGVSHGATFNNYYCQENVQNNMMGDMDNVY 547

Query:   536 VADSSQGEANGLFRPVRVHVRGQ-IDGLAGIGRGTTFVPAAAWPPTRFVFSRVPFGMGNR 594
             V +SSQG+  G+F+PVR+ VRGQ IDGLAGIG   TFVP  AWPPT FV+SRVP    NR
Sbjct:   548 VPESSQGDGIGIFKPVRISVRGQHIDGLAGIGCEATFVPPPAWPPTPFVYSRVPI---NR 604

Query:   595 NCQQSPANDDAEARTDHSGDLSGDGLTAIVGLSQGGNDTAN-VHGDEAELQSRLXXXXXX 653
             N QQS A+D +E R D SG++S DGLTA+VGLSQG +   N   G++ E           
Sbjct:   605 NGQQSIASDGSEGRIDQSGEISKDGLTALVGLSQGTSGVGNNPRGEQTE----------- 653

Query:   654 XXXXXXXXMQMLESPEHAVGIEWENANGSSISLDMKTPLSHFPPFRFGIEFEDVHRLSDG 713
                     + M E  E +VG EWENA+  +ISLD KTPL HFPPFRFG+EFEDVHRL++G
Sbjct:   654 GGRGSGATVGMSEPKEPSVGTEWENAS-CTISLDTKTPLCHFPPFRFGVEFEDVHRLANG 712

Query:   714 QVKHSPEYFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSYRKVHMYVDSREK 773
              V+HSPE+FYAGSLWK+S+QAFNDEDPQGRRT+GLFLHRRKAEI DS RKVH+Y+D R+K
Sbjct:   713 HVEHSPEFFYAGSLWKISIQAFNDEDPQGRRTIGLFLHRRKAEIVDSVRKVHVYIDPRDK 772

Query:   774 VTARYQLICPSKREVMVFGSFKQRGTLLPKAPKGWGWRTALLFDELADILQNGTLRVAAV 833
             VTARYQLICPSKREVM+FGSFKQRGTLLPKAPKGWGWRTALLFDEL+++LQNG LRVAAV
Sbjct:   773 VTARYQLICPSKREVMLFGSFKQRGTLLPKAPKGWGWRTALLFDELSELLQNGALRVAAV 832

Query:   834 VQLV 837
             VQLV
Sbjct:   833 VQLV 836
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q96IK5 GMCL1 "Germ cell-less protein-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1345156 Gmcl1 "germ cell-less homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359265 Gmcl1 "germ cell-less, spermatogenesis associated 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJQ9 GMCL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-865 gmcl1 "germ cell-less homolog 1 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NEA9 GMCL1P1 "Putative germ cell-less protein-like 1-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1185 zgc:63606 "zgc:63606" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9U1W5 gcl-1 "Protein GCL-1" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0005695 gcl "germ cell-less" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query837
pfam00651101 pfam00651, BTB, BTB/POZ domain 1e-17
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 9e-16
PHA03098534 PHA03098, PHA03098, kelch-like protein; Provisiona 3e-08
smart00875101 smart00875, BACK, BTB And C-terminal Kelch 9e-06
pfam07707101 pfam07707, BACK, BTB And C-terminal Kelch 2e-04
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information 
 Score = 78.4 bits (194), Expect = 1e-17
 Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 57  FNSGSFSDIIVHVMGSTYHLHRLILS-RSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGE 115
             +G   D+ + V    +H H+ +L+  S YF+ +   + +          +  ++V+ E
Sbjct: 5   RENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEV--------EITLEDVSPE 56

Query: 116 AIAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFII 160
                L ++Y  + ++ + N   +LA A  L +  L   C +F+I
Sbjct: 57  DFEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEEFLI 101

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 837
PHA02713557 hypothetical protein; Provisional 99.98
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.97
PHA02790480 Kelch-like protein; Provisional 99.97
PHA03098534 kelch-like protein; Provisional 99.97
KOG4682488 consensus Uncharacterized conserved protein, conta 99.89
KOG4350620 consensus Uncharacterized conserved protein, conta 99.89
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.77
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.66
KOG4591280 consensus Uncharacterized conserved protein, conta 99.55
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.53
KOG07831267 consensus Uncharacterized conserved protein, conta 99.35
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 98.92
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 98.85
KOG07831267 consensus Uncharacterized conserved protein, conta 98.05
KOG0511516 consensus Ankyrin repeat protein [General function 98.02
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.3
KOG2716230 consensus Polymerase delta-interacting protein PDI 97.25
KOG2838401 consensus Uncharacterized conserved protein, conta 96.86
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 96.72
KOG2838401 consensus Uncharacterized conserved protein, conta 96.63
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 96.51
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.36
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 96.31
KOG3473112 consensus RNA polymerase II transcription elongati 95.79
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 95.71
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 94.69
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.04
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 93.97
KOG2714465 consensus SETA binding protein SB1 and related pro 93.65
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 92.94
KOG1665302 consensus AFH1-interacting protein FIP2, contains 92.79
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 92.1
smart0006195 MATH meprin and TRAF homology. 88.71
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 87.24
KOG2715210 consensus Uncharacterized conserved protein, conta 85.21
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 84.76
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.98  E-value=5.3e-32  Score=311.71  Aligned_cols=187  Identities=16%  Similarity=0.216  Sum_probs=174.9

Q ss_pred             HHHHhcccCCCCCcEEEEEc-CeEEEEehhhhcc-CHHHHHhhccccccCC-CCEEEeecCCCCCCHHHHHHHHHHHhcC
Q 003235           51 HIQMEGFNSGSFSDIIVHVM-GSTYHLHRLILSR-SSYFRNMLHDHWKEAS-APVVTLHVDDKNVNGEAIAMALAYLYGH  127 (837)
Q Consensus        51 ~v~lklf~ng~fSDVtLvV~-G~~f~AHRvILAA-S~YFraMFss~~kES~-~~eI~L~I~d~dVs~eaF~~LLeFIYTG  127 (837)
                      ..+.++++++.+|||+|.++ |++|+|||+|||+ |+||++||+++|+|+. .++|+|+    ++++++|+.+|+|+|||
T Consensus        14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~----~v~~~~~~~ll~y~Yt~   89 (557)
T PHA02713         14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ----MFDKDAVKNIVQYLYNR   89 (557)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec----cCCHHHHHHHHHHhcCC
Confidence            34678899999999999997 8999999999996 9999999999999874 7899998    99999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-ccccccc
Q 003235          128 RPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AVELKEV  206 (837)
Q Consensus       128 eL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV~~sEe  206 (837)
                      +  ++.+|+++||.+|++|+++.|++.|++||.++++++||+.++.+|..+.+    ..|.+.|.+||++|| ++.++++
T Consensus        90 ~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~----~~L~~~a~~~i~~~f~~v~~~~e  163 (557)
T PHA02713         90 H--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSH----IPIVKYIKRMLMSNIPTLITTDA  163 (557)
T ss_pred             C--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHhCChh
Confidence            7  68999999999999999999999999999999999999999998888776    679999999999998 8999999


Q ss_pred             cCCCCHHHHHHhccCCC-CCCCCHHHHHHHHHHHHHHhCccc
Q 003235          207 LPKLSPQTLHALLTSDE-LWVPSEEQRFELALYAFLAKGAFC  247 (837)
Q Consensus       207 FleLS~e~L~eLLSSD~-L~V~SEeeVFeAVlrWI~~d~~~l  247 (837)
                      |++|+.+.|.+||++|+ |+|.+|++||+|+++|++|+...+
T Consensus       164 f~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r  205 (557)
T PHA02713        164 FKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITE  205 (557)
T ss_pred             hhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999988 799999999999999999986443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query837
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 5e-26
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-25
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 3e-19
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 2e-18
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-17
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-16
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 5e-16
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 1e-15
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 2e-15
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 1e-14
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 2e-14
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 3e-14
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 8e-14
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 8e-14
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 9e-14
3b84_A119 Zinc finger and BTB domain-containing protein 48; 1e-13
2vpk_A116 Myoneurin; transcription regulation, transcription 1e-13
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 7e-13
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 2e-10
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
 Score =  107 bits (270), Expect = 5e-26
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 19/197 (9%)

Query: 54  MEGFNS----GSFSDIIV---HVMGSTYHLHRLILSRSS-YFRNMLHDHWKEASAPVVTL 105
               N     G F DI +      G  +  HR +L+ ++ YF  +L   + E+ +  V +
Sbjct: 20  SWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEM 79

Query: 106 HVDDKNVNGEAIAMA--LAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISEL 163
                    E   +   + Y+Y  R +++  +   VL  A    L  L   C +F+  +L
Sbjct: 80  RKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKL 139

Query: 164 WTSNLLAYQVFAENQDYGIHG-ERVRNACWGYLCQ--SGAVELKEVLPKLSPQTLHALLT 220
             SN +A    A      ++   ++       + +     ++ +E    L    +   L+
Sbjct: 140 HLSNCVAIHSLAH-----MYTLSQLALKAADMIRRNFHKVIQDEEFY-TLPFHLIRDWLS 193

Query: 221 SDELWVPSEEQRFELAL 237
             E+ V SEE  FE  L
Sbjct: 194 DLEITVDSEEVLFETVL 210
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query837
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 100.0
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.93
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.9
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.88
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.85
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.85
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.84
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.84
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.83
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.82
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.81
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.81
2vpk_A116 Myoneurin; transcription regulation, transcription 99.81
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.79
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.78
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.78
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.78
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.74
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.73
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.3
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 99.21
4ajy_C97 Transcription elongation factor B polypeptide 1; E 98.94
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 98.92
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.7
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.25
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.09
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.01
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.01
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.55
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.98
3kvt_A115 Potassium channel protein SHAW; tetramerization do 95.34
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 94.82
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 94.72
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 93.98
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 93.87
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 93.72
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 93.67
3hqi_A 312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 91.15
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 84.31
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=100.00  E-value=2.2e-35  Score=303.67  Aligned_cols=230  Identities=22%  Similarity=0.244  Sum_probs=182.7

Q ss_pred             hhhhhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccc--cCCCCEEEeecCCCCCCHHHHHHHHH
Q 003235           46 TSLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWK--EASAPVVTLHVDDKNVNGEAIAMALA  122 (837)
Q Consensus        46 ~sLl~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~k--ES~~~eI~L~I~d~dVs~eaF~~LLe  122 (837)
                      ...+...+.++++++.+|||+|.++|++|+|||+|||+ |+||++||.+++.  |+...+|+++    ++++++|+.+|+
T Consensus        15 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~----~v~~~~f~~ll~   90 (256)
T 3hve_A           15 AARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE----GISVMVMREILD   90 (256)
T ss_dssp             HHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECS----SCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeC----CCCHHHHHHHHh
Confidence            33333457789999999999999999999999999996 9999999999887  6677889998    899999999999


Q ss_pred             HHhcCCCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccCcccHHHHHHHHhhcccCCchHHHHHHHHHHHHhcc-cc
Q 003235          123 YLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIISELWTSNLLAYQVFAENQDYGIHGERVRNACWGYLCQSG-AV  201 (837)
Q Consensus       123 FIYTGeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s~Ls~eN~L~Il~fAe~y~lgl~seeLk~aCl~FI~kNF-eV  201 (837)
                      |+|||++.++.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|++    ..|.+.|..||.+|| .+
T Consensus        91 ~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~----~~L~~~~~~~i~~~f~~v  166 (256)
T 3hve_A           91 YIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCL----HHVHYLATEYLETHFRDV  166 (256)
T ss_dssp             HHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCc----HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998    999999999999998 78


Q ss_pred             ccccccCCCCHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhCccccccCCCCCC--CCCCCCcccccccchhhHHHHHH
Q 003235          202 ELKEVLPKLSPQTLHALLTSDELWVPSEEQRFELALYAFLAKGAFCKTECFEQGS--SSSKAGADDLEGQNAARTLLVEL  279 (837)
Q Consensus       202 ~~sEeFleLS~e~L~eLLSSD~L~V~SEeeVFeAVlrWI~~d~~~l~~~~~~~~s--~~~~L~~~~L~~q~a~~~lL~Ei  279 (837)
                      ..+++|.+|+.+.+..||++|+|+|.+|.+||+++++|+++++..++.+......  +...+...+|.+....++++.+-
T Consensus       167 ~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~VRf~~l~~~~l~~~v~~~~l~~~~  246 (256)
T 3hve_A          167 SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVREI  246 (256)
T ss_dssp             TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCSTTTHHHHHHHHHHHTTCC-CHHHHHHTSTTHHHH
T ss_pred             hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhcChHHHhh
Confidence            8899999999999999999999999999999999999999987544332211111  11567788888888888888876


Q ss_pred             -hhhc
Q 003235          280 -ADCV  283 (837)
Q Consensus       280 -~d~~  283 (837)
                       .+|.
T Consensus       247 ~~~c~  251 (256)
T 3hve_A          247 VKECS  251 (256)
T ss_dssp             HCC--
T ss_pred             HHHHH
Confidence             4554
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 837
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 4e-14
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 2e-12
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 58  NSGSFSDIIVHVMGSTYHLHRLILS-RSSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEA 116
           +    +D+++ V    +  H+ +L   S  F ++  D  K   + +         +N E 
Sbjct: 21  SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP----EINPEG 76

Query: 117 IAMALAYLYGHRPKLNDANAFRVLAAASFLDLQDLCAICTDFI 159
             + L ++Y  R  L + N   V+A A +L ++ +   C  FI
Sbjct: 77  FNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFI 119
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query837
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.83
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.81
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.24
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.14
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.83
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.33
d1t1da_100 Shaker potassium channel {California sea hare (Apl 95.68
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 89.71
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 89.39
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 89.36
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 88.52
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 86.71
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.2e-21  Score=174.38  Aligned_cols=110  Identities=20%  Similarity=0.370  Sum_probs=100.3

Q ss_pred             hhhhHHHHhcccCCCCCcEEEEEcCeEEEEehhhhcc-CHHHHHhhccccccCCCCEEEeecCCCCCCHHHHHHHHHHHh
Q 003235           47 SLCDHIQMEGFNSGSFSDIIVHVMGSTYHLHRLILSR-SSYFRNMLHDHWKEASAPVVTLHVDDKNVNGEAIAMALAYLY  125 (837)
Q Consensus        47 sLl~~v~lklf~ng~fSDVtLvV~G~~f~AHRvILAA-S~YFraMFss~~kES~~~eI~L~I~d~dVs~eaF~~LLeFIY  125 (837)
                      .++. .+.++++++.+|||+|.++|++|+|||+||++ |+||++||.+.+.++...++.++    ++++++|+.+|+|+|
T Consensus        11 ~ll~-~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~----~v~~~~f~~ll~~~Y   85 (122)
T d1r29a_          11 DVLL-NLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP----EINPEGFNILLDFMY   85 (122)
T ss_dssp             HHHH-HHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCT----TSCHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeec----ccCHHHHHHHHhhhc
Confidence            3443 46788899999999999999999999999995 99999999999988876666555    899999999999999


Q ss_pred             cCCCCCCchhHHHHHHHHHhcChHHHHHHHHHHHHh
Q 003235          126 GHRPKLNDANAFRVLAAASFLDLQDLCAICTDFIIS  161 (837)
Q Consensus       126 TGeL~Is~dnVleLL~AAd~LqL~~Lk~lCeefL~s  161 (837)
                      ||++.++.+++.+++.+|++|+++.|++.|.+||.+
T Consensus        86 tg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          86 TSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCeecCchhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999975
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure