Citrus Sinensis ID: 003256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830------
Protein Sequence
MGTFLLNDTRHRHWIEDDRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRILKKDPKTVKALSNSSSNKAPKTVKALSNSSSNCDIDIRTLGKGEVEASDLRTLKMYKLNP
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccEEEHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccEEEEEccccccHHHHHHHHHHHccccccccEEEEEEEHHHcccccccHHHccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHccccccEEEEEccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHccccccEEEEccccccccccccccccccccccccccccHHHcccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEEEHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccHHccccccccccccccEEEEEEEccccccHHHHHHHHHccccccccEEEEEEEEEEccccccHHEHHccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHccEEEEEEEccccccccccccHHHHHHHHHHHHccccEEEEEEEccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEccccccccHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHcccccEEEEEcccccccHHHcccHcHHHccccccccHHHcccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccEEEEEEccccEEEHcHHHHHHHHcccc
Coil and Loop (DISEMBL)
mgtfllndtrhrhwieddrfttcvsynestkfsyhginldeeavsSVLPVVMLQVSLAFSISQILYILLrplkqpkfvsntlsgiilgpsflgrIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTvkmdkgmiprtikktYSVSLTVFIVPLLISLLVghreqykiprihdqgisisfvaskcAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRriperkpvkdFYIVAILTGALVMAVACDSMRVNYTIGAAMLGivipagpplgsaLVEKSEAILSNfflpffyihvgqqidiySINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISvyynpqrrLESIAMGTlqtalpdselrilcgihdedhISGIIHLIkasnptemnpiCAYVVHLVELVGraapvvetystQKTKAMANSTDHIMRAVIKYAegsndavtiqpFIMISQYETMHESICKLVKDNCITLILlqfippneetegRAACLhglnnnvlgyapctvgifvdkrlnncsnsakpanfcYNVAVFFIGGPDDREAMALVSHmssnpgvritLSRIYLeenlveeeddkcldevVMNDfmasnfgnpnvvcrridandsnQLVNAFRSlvsdndlvivgrqqpfssrlleetkpwveydelgIIGDMLASADFAEGMVSVLVIQSVRIlkkdpktvkalsnsssnkapkTVKALsnsssncdidirtlgkgeveasdlrtlkmyklnp
Flexible Loop (DISEMBL)
mgtfllndtrhrhwieddrftTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIrriperkpvKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETystqktkamansTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHmssnpgvriTLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFrslvsdndlvivgrqqpfssrlleetkpWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRilkkdpktvkalsnsssnkapktvkalsnsssncdidirtlgkgeveasdlrtlkmyklnp
Low Complexity Region (SEG)
MGTFLLNDTRHRHWIEDDRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRILKKDPKTVKALSNSSSNKAPKTVKALSNSSSNCDIDIRTLGKGEVEASDLRTLKMYKLNP
Disordered region (IsUnstruct)
***FLLNDTRHRHWIEDDRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRILK**********************************************************
Disordered Region (DISOPRED)
***FL**DTRHRHWIEDDRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQ******************ELRILCGIHDEDHISGIIHLIKASN**EMNPICAYVVHLVELVGR*************************AVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIP*********ACLHGLNNNVLGYAPCTVGIFVDKRLNN*****KPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL*******CLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPF**********WVEYDELGIIGDMLASADFAEGMVSVLVIQSVR****************************************************TLKMYKL**
Disordered Region (DISEMBL)
MGTFLLNDTRHRHWIEDDRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRILKKD**************************SNCDIDIRTLGKGEVEASDLRTLKMYKLNP
Disordered Region (DISPRO)
MGTFLLNDTRHRHWIEDDRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRIL*****************************SNCDIDIRTLGKGEVEASDLRTLKMYKLNP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTFLLNDTRHRHWIEDDRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRILKKDPKTVKALSNSSSNKAPKTVKALSNSSSNCDIDIRTLGKGEVEASDLRTLKMYKLNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	836	2.2.26 [Sep-21-2011]
Q9SIT5	821	Cation/H(+) antiporter 15	yes	no	0.827	0.842	0.331	1e-108
Q9FGH6	857	Cation/H(+) antiporter 25	no	no	0.879	0.857	0.284	2e-92
Q1HDT2	859	Cation/H(+) antiporter 24	no	no	0.880	0.856	0.287	6e-91
Q9FFB8	822	Cation/H(+) antiporter 3	no	no	0.845	0.860	0.3	4e-84
Q9FYC1	817	Cation/H(+) antiporter 4	no	no	0.834	0.854	0.303	2e-83
Q9LUN4	800	Cation/H(+) antiporter 19	no	no	0.875	0.915	0.286	5e-80
Q8VYD4	867	Cation/H(+) antiporter 23	no	no	0.922	0.889	0.280	8e-80
Q9FFR9	810	Cation/H(+) antiporter 18	no	no	0.879	0.907	0.276	1e-78
Q58P69	783	Cation/H(+) antiporter 10	no	no	0.844	0.901	0.283	1e-75
O22920	831	Cation/H(+) symporter 13	no	no	0.844	0.849	0.289	4e-74

>sp|Q9SIT5|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 247/744 (33%), Positives = 407/744 (54%), Gaps = 52/744 (6%)

Query: 68  LLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINT 127
           +L+P +QP+ +S  L GI+LGPS LGR   F   +   R ++  +  + +G +YF+F+  
Sbjct: 57  ILKPFRQPRVISEILGGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVG 116

Query: 128 VKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHD---QGISISFVA-- 182
           V+MD  ++ +T K+  ++++   ++P LI    G    + + R  D   QG  I F+   
Sbjct: 117 VEMDIMVVRKTGKRALTIAIGGMVLPFLI----GAAFSFSMHRSEDHLGQGTYILFLGVA 172

Query: 183 -SKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPL----SKAKYRSVA 237
            S  A+PVL   ++ELKL+N+E+G++++S+AL++++   + L +A       K  + S+ 
Sbjct: 173 LSVTAFPVLARILAELKLINTEIGRISMSAALVNDMFAWILLALAIALAESDKTSFASLW 232

Query: 238 IRIELSL-CAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRV 296
           + I  ++  A+ +F   V+ P I WIIR+ PE +   +F+I  ILTG ++     D++  
Sbjct: 233 VMISSAVFIAVCVF---VVRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGT 289

Query: 297 NYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAA 356
           +   GA + G+VIP GP LG  L+EK E  +S   LP F+   G + +I +I     +  
Sbjct: 290 HSVFGAFVFGLVIPNGP-LGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLT 348

Query: 357 LELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQ 416
           L L+I  A  GKV+ +++         R  +     +N KG+ E++     + ++++D +
Sbjct: 349 LFLVIFLACAGKVIGTVIVAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDE 408

Query: 417 TYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHIS 476
           T++ +VL  L +T ++TP++++ Y P ++  S    T+Q   PDSELR+L  +H   ++ 
Sbjct: 409 TFATMVLVALVMTGVITPIVTILYKPVKKSVSYKRRTIQQTKPDSELRVLVCVHTPRNVP 468

Query: 477 GIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMA-----NSTDHIMR 531
            II+L++AS+PT+ +PIC YV+HLVEL GRA+ ++  ++T+K+   A       +DHI+ 
Sbjct: 469 TIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIIN 528

Query: 532 AVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQF-----IPPNEETE 586
           A   Y E     V +QP   IS Y TMHE +C L +D  ++ I++ F     +    E+ 
Sbjct: 529 AFENY-EQHAAFVAVQPLTAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMEST 587

Query: 587 GRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMA 646
             A  L  +N N+L  +PC+VGI VD+ LN  +           VAV F GGPDDREA+A
Sbjct: 588 NPAYRL--VNQNLLENSPCSVGILVDRGLNGATR-LNSNTVSLQVAVLFFGGPDDREALA 644

Query: 647 LVSHMSSNPGVRITLSRIYLEEN------------------LVEEEDDKCLDEVVMNDFM 688
               M+ +PG+ +T+ R   +E+                   ++    + LD+  +N F 
Sbjct: 645 YAWRMAQHPGITLTVLRFIHDEDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLFR 704

Query: 689 ASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDE 748
           A N    ++V      ++  + V A RS+ S +DL IVGR +  SS L      W E  E
Sbjct: 705 AENAEYESIVYIEKLVSNGEETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSECPE 764

Query: 749 LGIIGDMLASADFAEGMVSVLVIQ 772
           LG IGD+LAS+DFA   VSVLV+Q
Sbjct: 765 LGAIGDLLASSDFA-ATVSVLVVQ 787

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGH6|CHX25_ARATH Cation/H(+) antiporter 25 OS=Arabidopsis thaliana GN=CHX25 PE=2 SV=1

 Score =  340 bits (873), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 221/778 (28%), Positives = 384/778 (49%), Gaps = 43/778 (5%)

Query: 36  GINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRI 95
           G+   E  ++      +++  L     +I+Y+LLRPL+QP+ V   + G+++GPS LGR 
Sbjct: 53  GMFKGENGMNYTFSTFLIEAILIIFFIKIVYVLLRPLRQPRIVCEIIGGMMIGPSMLGRN 112

Query: 96  KMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLL 155
           + F+ Y+              +G  YF F+   K D   I +  +K   ++    +VP+ 
Sbjct: 113 RNFNYYLFPPIANYICANIGLMGFFYFFFLTAAKTDVAEIFKAPRKHKYIAAVSVLVPIA 172

Query: 156 ISLLVG----HREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISS 211
                G    H+   ++ +    G  ++F     ++PV+   + ++ LLNSE+G+ A+S 
Sbjct: 173 CVGSTGAALKHKMDIRLQKPSSIG-GVTFALGFTSFPVIYTVLRDMNLLNSEIGKFAMSV 231

Query: 212 ALLHEIVGLLRLL----MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIP 267
            LL ++VG+  L+    MA           I   +S   M+    LV+  + +WI+ + P
Sbjct: 232 TLLGDMVGVYVLVLFEAMAQADGGGGAYSVIWFLISAAIMAACLLLVVKRSFEWIVAKTP 291

Query: 268 ERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAIL 327
           E   V   YIV IL G LV     D   +   +G   LG+V+P GPPLGS L  +SE  +
Sbjct: 292 EGGLVNQNYIVNILMGVLVSCFLTDMFGMAIAVGPIWLGLVVPHGPPLGSTLAIRSETFV 351

Query: 328 SNFFLPFFYIHVGQQ--IDIYSINNW-RAFAALELIIMAAYIGKVVASILATTCFRTSFR 384
           + F +PF +  VGQ+  +++ S   W +  + L  + +  ++ K V+S  A   F+   R
Sbjct: 352 NEFLMPFSFALVGQKTNVNLISKETWPKQISPLIYMSIVGFVTKFVSSTGAALFFKVPTR 411

Query: 385 NALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQR 444
           ++L     +N++G  +++ +L W  ++++ +  YSV+VL  + VT +  PLIS  Y+P R
Sbjct: 412 DSLTLGLMMNLRGQIDILLYLHWIDKQMVGLPGYSVMVLYAIVVTGVTAPLISFLYDPTR 471

Query: 445 RLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELV 504
              S    T+Q    ++E  ++  + D D  SG+I  +  + PT+ +P   + + LVEL 
Sbjct: 472 PYRSSKRRTIQHTPQNTETGLVLAVTDHDTFSGLITFLDFAYPTKTSPFSVFAIQLVELE 531

Query: 505 GRAAPVVETYSTQK-----------TKAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMIS 553
           GRA P+   +  ++            +  +   D +  A   Y E  ++ VT+  +   +
Sbjct: 532 GRAQPLFIAHDKKREEEYEEEEEPAERMGSRRVDQVQSAFKLYQEKRSECVTMHAYTAHA 591

Query: 554 QYETMHESICKLVKDNCITLILLQFIPPNEE----TEGRAACLHGLNNNVLGYAPCTVGI 609
               M+++IC+L        ILL +     +    TE R + +  +N +VL + PC+V I
Sbjct: 592 SKHNMYQNICELALTKKTAFILLPYQKERLQDAALTELRDSGMLSVNADVLAHTPCSVCI 651

Query: 610 FVDK-RLNNC-----------SNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGV 657
           + +K RL N            +NS+      Y   V F+GG D+REA+ L   M+ NP +
Sbjct: 652 YYEKGRLKNAMVRSSMDPQHTTNSSHMRQEMYRFVVLFLGGADNREALHLADRMTENPFI 711

Query: 658 RITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSL 717
            +T+ R     +  E+E +K LD+ V+  F   N  N  V  + +   +  + + A +++
Sbjct: 712 NLTVIRFLAHNHEGEDEREKKLDDGVVTWFWVKNESNARVSYKEVVVKNGAETLAAIQAM 771

Query: 718 -VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFA-EGMVSVLVIQS 773
            V+D DL I GR++  + ++LE    W E  +LG+IGD +A + FA EG  SVLV+Q 
Sbjct: 772 NVNDYDLWITGRREGINPKILEGLSTWSEDHQLGVIGDTVAGSVFASEG--SVLVVQQ 827

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1HDT2|CHX24_ARATH Cation/H(+) antiporter 24 OS=Arabidopsis thaliana GN=CHX24 PE=2 SV=2

 Score =  335 bits (860), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 224/779 (28%), Positives = 389/779 (49%), Gaps = 43/779 (5%)

Query: 36  GINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRI 95
           G+   E A++      +++  +     +++ I LRP +QP+ VS  + G+++GPS  G I
Sbjct: 53  GMFKGENAMNYAFSTFLIEAIIIIFFIKVVSIALRPFRQPRIVSEIIGGMMIGPSMFGGI 112

Query: 96  KMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLL 155
           + F+ Y+              +G  YF+F+   K D G I +  +K   ++    IVP++
Sbjct: 113 RNFNYYLFPPIANYICANIGLMGFFYFLFLTAAKTDVGAIGKAPRKHKYIAAIGVIVPII 172

Query: 156 ISLLVGHREQYKIPRIHDQGISIS---FVASKCAYPVLVDAISELKLLNSELGQLAISSA 212
               VG   + ++     +  SI    F  S  ++PV+   + ++ LLNSE+G+ A+S A
Sbjct: 173 CVGSVGMAMRDQMDENLQKPSSIGGVVFALSFTSFPVIYTVLRDMNLLNSEVGKFAMSVA 232

Query: 213 LLHEIVGL-LRLLMAPLSKAKYRSV--AIRIELSLCAMSLFTFLVLWPTIQWIIRRIPER 269
           LL ++ G+ + ++   ++ A            +S+   + F  LV+     WI+ + PE 
Sbjct: 233 LLGDMAGVYVIVIFEAMTHADVGGAYSVFWFLVSVVIFAAFMLLVVRRAFDWIVSQTPEG 292

Query: 270 KPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSN 329
             V   YIV IL G L      D   ++  +G   LG+++P GPPLGS L  +SE  +  
Sbjct: 293 TLVNQNYIVMILMGVLASCFLTDMFGLSIAVGPIWLGLLVPHGPPLGSTLAVRSETFIYE 352

Query: 330 FFLPFFYIHVGQQIDIYSINN--WR-AFAALELIIMAAYIGKVVASILATTCFRTSFRNA 386
           F +PF Y  VGQ  +I+ + +  WR   + L  + +  +I K +++  A   F+   R +
Sbjct: 353 FLMPFTYALVGQGTNIHFLRDETWRNQLSPLFYMTVVGFITKFLSTAFAALFFKVPARES 412

Query: 387 LLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRL 446
           +     +N++G  +L+ +L W  + ++    Y+V+VL  + VTA+ TPLI+ +Y+P R  
Sbjct: 413 ITLGLMMNLRGQMDLLVYLHWIDKRIVGFPGYTVMVLHTVVVTAVTTPLINFFYDPTRPY 472

Query: 447 ESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGR 506
            S    T+Q    ++E+ ++  + D + +SG+I  +  + PT+ +P+  + V LVEL GR
Sbjct: 473 RSSKHRTIQHTPQNTEMGLVLAVSDHETLSGLITFLDFAYPTKSSPLSIFAVQLVELAGR 532

Query: 507 AAPVVETYSTQK--------------TKAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMI 552
           A P+   +  +K               +  +   D +  A   Y E  N+ VT++ +   
Sbjct: 533 ATPLFIDHEQRKEEEEEEYEEEEEEPERKQSGRIDQVQSAFKLYEEKRNECVTLRSYTAH 592

Query: 553 SQYETMHESICKLVKDNCITLILLQFIPPNEE----TEGRAACLHGLNNNVLGYAPCTVG 608
           +    M++ IC+L        ILL +     E    TE R + +  +N +VL + PC+V 
Sbjct: 593 APKRLMYQDICELALGKKTAFILLPYQKERLEDAAPTELRDSGMLSVNADVLEHTPCSVC 652

Query: 609 IFVDK-RLNNC-----------SNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPG 656
           I+ DK RL N            +NS +     Y   V F+GG D+REA+ L   MS+NP 
Sbjct: 653 IYFDKGRLKNAVVRLSMDLQHSTNSIRMRQETYRFVVLFLGGADNREALHLADRMSTNPD 712

Query: 657 VRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRS 716
           V +T+ R     +  E+E +K LD+ V+  F   N  N  V  + +   +  + + A ++
Sbjct: 713 VTLTVIRFLSYNHEGEDEREKKLDDGVVTWFWVKNESNERVSYKEVVVKNGAETLAAIQA 772

Query: 717 L-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFA-EGMVSVLVIQS 773
           + V+D DL I GR++  + ++LE    W E  +LG+IGD +A++ FA EG  SVLV+Q 
Sbjct: 773 MNVNDYDLWITGRREGINPKILEGLSTWSEDHQLGVIGDTVAASVFASEG--SVLVVQQ 829

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFB8|CHX3_ARATH Cation/H(+) antiporter 3 OS=Arabidopsis thaliana GN=CHX3 PE=2 SV=1

 Score =  313 bits (801), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 228/760 (30%), Positives = 394/760 (51%), Gaps = 53/760 (6%)

Query: 63  QILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGG--RGMVFAQAASTIGGI 120
           Q L+  LR L   +F S+ L+G++L  SFL        + +    + +VF+  A+    +
Sbjct: 70  QFLHFFLRRLGMIRFTSHMLTGVLLSKSFLKENSAARRFFSTEDYKEIVFSLTAAC-SYM 128

Query: 121 YFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLIS--LLVGHREQYKIPRIHDQGISI 178
            F F+  VKMD G+I  T +K  ++ L+  ++  L+   +  G+              S+
Sbjct: 129 MFWFLMGVKMDTGLIRTTGRKAITIGLSSVLLSTLVCSVIFFGNLRDVGTKNSDHTLNSL 188

Query: 179 SFV---ASKC--AYPVLVDAISELKLLNSELGQLAISSALLHE----IVGLLRLLMAPLS 229
            +V   + +C  ++PV+ + + EL+L NSELG+LAISSA++ +    I+  + + M  L 
Sbjct: 189 EYVVIYSIQCLSSFPVVGNLLFELRLQNSELGRLAISSAVISDFSTSILASVLIFMKELK 248

Query: 230 KAKYR--SVAI-------RIELSLCAMSLFTFLVLW---PTIQWIIRRIPERKPVKDFY- 276
             + R  SV I       R  +    + LF  + ++   P + +II++ P  +PVK  Y 
Sbjct: 249 DEQTRLGSVFIGDVIAGNRPLMRAGIVVLFVCIAIYVFRPLMFYIIKQTPSGRPVKAIYL 308

Query: 277 --IVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPF 334
             I+ +++G+ ++A  C   + +  +G  +LG+ +P GPPLGSA+++K E+ +   FLPF
Sbjct: 309 STIIVMVSGSAILANWC---KQSIFMGPFILGLAVPHGPPLGSAIIQKYESAIFGTFLPF 365

Query: 335 FYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVN 394
           F      +IDI ++  W     + LI++ +++ K + + +    +     +    S  ++
Sbjct: 366 FIASSSTEIDISALFGWEGLNGIILIMVTSFVVKFIFTTVPALFYGMPMEDCFALSLIMS 425

Query: 395 IKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTL 454
            KG+ EL  +    QR  +  +T++V  L     +AI+ P++   Y+P R         +
Sbjct: 426 FKGIFELGAYALAYQRGSVRPETFTVACLYITLNSAIIPPILRYLYDPSRMYAGYEKRNM 485

Query: 455 QTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETY 514
           Q   P+SELRIL  I+  D IS +I+L++A  P+  +P+  YV+HL+ELVG+A P+  ++
Sbjct: 486 QHLKPNSELRILSCIYRTDDISPMINLLEAICPSRESPVATYVLHLMELVGQANPIFISH 545

Query: 515 STQKTKAMANS-TDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITL 573
             Q  +    S +++++ +  K+ +    +V +  +  +S  +TMH  IC L  +N  +L
Sbjct: 546 KLQTRRTEETSYSNNVLVSFEKFRKDFYGSVFVSTYTALSMPDTMHGDICMLALNNTTSL 605

Query: 574 ILLQFIPPNEETEGRAAC-----LHGLNNNVLGYAPCTVGIFVDK----RLNNCS----- 619
           ILL F       +G A       +  LN +VL  APC+VG+FV +    R N  S     
Sbjct: 606 ILLPF-HQTWSADGSALISNNNMIRNLNKSVLDVAPCSVGVFVYRSSSGRKNISSGRKTI 664

Query: 620 NSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEED--DK 677
           N   P    YN+ + F+GG DDREA+ L + M+ +P + IT+ R+   +    E    DK
Sbjct: 665 NGTVPNLSSYNICMIFLGGKDDREAVTLATRMARDPRINITIVRLITTDEKARENTVWDK 724

Query: 678 CLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLL 737
            LD+ ++ D  ++   +     + I+  D+ +  +  RS+VSD D+ IVGR    +S   
Sbjct: 725 MLDDELLRDVKSNTLVDIFYSEKAIE--DAAETSSLLRSMVSDFDMFIVGRGNGRTSVFT 782

Query: 738 EETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRIL 777
           E  + W E+ ELGIIGD+L S DF     SVLVIQ  +++
Sbjct: 783 EGLEEWSEFKELGIIGDLLTSQDF-NCQASVLVIQQQQLM 821

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYC1|CHX4_ARATH Cation/H(+) antiporter 4 OS=Arabidopsis thaliana GN=CHX4 PE=2 SV=1

 Score =  311 bits (796), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 229/755 (30%), Positives = 389/755 (51%), Gaps = 57/755 (7%)

Query: 63  QILYILLRPLKQPKFVSNTLSGIILGPSFLG------RIKMFDAYVTGGRGMVFAQAAST 116
           Q  +  LR L   +F S+ L+GI+L  SFL       +    + Y     G+V A +   
Sbjct: 69  QFFHFFLRRLGMIRFTSHMLTGILLSKSFLKENTPARKFLSTEDYKETLFGLVGACSY-- 126

Query: 117 IGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLL--------VGHREQYKI 168
              + F F+  VKMD  +I  T +K  ++ L+  ++ + +  L        VG ++   +
Sbjct: 127 ---MMFWFLMGVKMDLSLIRSTGRKAVAIGLSSVLLSITVCALIFFLILRDVGTKKGEPV 183

Query: 169 PRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHE----IVGLLRLL 224
               +  I I  +    ++PV+ + + EL+L NSELG+LA+SSA++ +    I+  + + 
Sbjct: 184 MSFFEI-IFIYLIQCLSSFPVIGNLLFELRLQNSELGRLAMSSAVISDFSTSILSAVLVF 242

Query: 225 MAPLSKAKYRSVAIRI------------ELSLCAMSLFTFLVLWPTIQWIIRRIPERKPV 272
           +  L   K R  ++ I              ++     F   +  P + +II+R P  +PV
Sbjct: 243 LKELKDDKSRLGSVFIGDVIVGNRPMKRAGTVVLFVCFAIYIFRPLMFFIIKRTPSGRPV 302

Query: 273 KDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFL 332
           K FYI AI+      A+  D  + +  IG  +LG+ +P GPPLGSA+++K E+++   FL
Sbjct: 303 KKFYIYAIIILVFGSAILADWCKQSIFIGPFILGLAVPHGPPLGSAILQKFESVVFGTFL 362

Query: 333 PFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCF 392
           PFF     ++ID   + +W    ++ +++  ++I K   + L    +    ++ +  S  
Sbjct: 363 PFFVATSAEEIDTSILQSWIDLKSIVILVSVSFIVKFALTTLPAFLYGMPAKDCIALSLI 422

Query: 393 VNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMG 452
           ++ KG+ E   +    QR  I   T++VL L  L  +A++ PL+   Y+P R        
Sbjct: 423 MSFKGIFEFGAYGYAYQRGTIRPVTFTVLSLYILLNSAVIPPLLKRIYDPSRMYAGYEKR 482

Query: 453 TLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVE 512
            +    P+SELRIL  I+  D I  +I+L++A+ P+  NP+  YV+HL+ELVG+A PV+ 
Sbjct: 483 NMLHMKPNSELRILSCIYKTDDIRPMINLLEATCPSRENPVATYVLHLMELVGQANPVLI 542

Query: 513 TY--STQKTKAMANSTDHIMRAVIKYAEGSND---AVTIQPFIMISQYETMHESICKLVK 567
           ++   T+K++ M+ +++++   V+ + +  ND   +V +  +  +S  + MH  IC L  
Sbjct: 543 SHRLQTRKSENMSYNSENV---VVSFEQFHNDFFGSVFVSTYTALSVPKMMHGDICMLAL 599

Query: 568 DNCITLILLQFIPPNEETEGRAAC-----LHGLNNNVLGYAPCTVGIFVDKRLNNCSNSA 622
           +N  +LI+L F       +G A       +  LN +VL  +PC+VGIFV  R +N   + 
Sbjct: 600 NNTTSLIILPF-HQTWSADGSAIVSDSLMIRQLNKSVLDLSPCSVGIFV-YRSSNGRRTI 657

Query: 623 K--PANF-CYNVAVFFIGGPDDREAMALVSHMSSNPGVRIT-LSRIYLEENLVEEED-DK 677
           K   ANF  Y V + F+GG DDREA++L   M+ +  + IT +S I  E+   +  D D+
Sbjct: 658 KETAANFSSYQVCMLFLGGKDDREALSLAKRMARDSRITITVVSLISSEQRANQATDWDR 717

Query: 678 CLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLL 737
            LD  ++ D  ++     ++V      ND+NQ     +S+ ++ DL IVGR++   S   
Sbjct: 718 MLDLELLRDVKSNVLAGADIVFSEEVVNDANQTSQLLKSIANEYDLFIVGREKGRKSVFT 777

Query: 738 EETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772
           E  + W E++ELGIIGD+L S D      SVLVIQ
Sbjct: 778 EGLEEWSEFEELGIIGDLLTSQDL-NCQASVLVIQ 811

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUN4|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1

 Score =  299 bits (766), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 220/768 (28%), Positives = 391/768 (50%), Gaps = 36/768 (4%)

Query: 31  KFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPS 90
           K + +G   +E  +   LP+++LQ+ L    +++L   L+PLKQP+ ++  + GI+LGPS
Sbjct: 15  KATSNGAFQNESPLDFALPLIILQIVLVVVFTRLLAYFLKPLKQPRVIAEIIGGILLGPS 74

Query: 91  FLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVF 150
            LGR K +   +   + +      + IG ++F+F+  +++D   I +T KK+  +++   
Sbjct: 75  ALGRSKAYLDTIFPKKSLTVLDTLANIGLLFFLFLVGLELDFAAIKKTGKKSLLIAIAGI 134

Query: 151 IVPLLISLLVGHREQYKIPRIHDQGISISFVA---SKCAYPVLVDAISELKLLNSELGQL 207
            +P ++ +         I +  DQ   I F+    S  A+PVL   ++ELKLL +++G++
Sbjct: 135 SLPFIVGVGTSFVLSATISKGVDQLPFIVFMGVALSITAFPVLARILAELKLLTTDIGRM 194

Query: 208 AISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMS--LFTFLVLWPTIQWIIRR 265
           A+S+A ++++   + L +A        S  + + + LC     +F  + + P + ++ RR
Sbjct: 195 AMSAAGVNDVAAWILLALAIALSGDGTSPLVSVWVLLCGTGFVIFAVVAIKPLLAYMARR 254

Query: 266 IPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEA 325
            PE +PVK+ Y+   LT  L  +   D++ ++   GA ++GIV P   P    L EK E 
Sbjct: 255 CPEGEPVKELYVCVTLTVVLAASFVTDTIGIHALFGAFVVGIVAPKEGPFCRILTEKIED 314

Query: 326 ILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRN 385
           ++S   LP ++   G + D+ +I   +++  L L+I+    GK+V ++ ++   +  FR 
Sbjct: 315 LVSGLLLPLYFAASGLKTDVTTIRGAQSWGLLVLVILTTCFGKIVGTVGSSMLCKVPFRE 374

Query: 386 ALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRR 445
           A+     +N KG+ EL+     + R++++ Q +++LVL  L  T I TP++ + Y P R+
Sbjct: 375 AVTLGFLMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIVMLIYKPARK 434

Query: 446 LESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPT-EMNPICAYVVHLVELV 504
                  T+Q    DSELRIL   H   +I  +I+LI++S  T +   +C Y +HL+EL 
Sbjct: 435 GAPYKHRTIQRKDHDSELRILACFHSTRNIPTLINLIESSRGTGKKGRLCVYAMHLMELS 494

Query: 505 GRAAPVVETYSTQKT-----KAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMH 559
            R++ +   +  +         +  STD ++ A   Y      AV ++P   IS   ++H
Sbjct: 495 ERSSAIAMVHKARNNGLPIWNKIERSTDQMVIAFEAYQH--LRAVAVRPMTAISGLSSIH 552

Query: 560 ESICKLVKDNCITLILLQFIPPNEETEGRAACL----HGLNNNVLGYAPCTVGIFVDKRL 615
           E IC       + +ILL F   ++  +G    +    H +N  VL  APC+VGI VD+ L
Sbjct: 553 EDICTSAHQKRVAMILLPF-HKHQRMDGAMESIGHRFHEVNQRVLQRAPCSVGILVDRGL 611

Query: 616 NNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGV----------RITLSRIY 665
              S     +   Y V + F GG DDREA+A    M  +PG+          R TL R  
Sbjct: 612 GGTSQVVA-SEVAYKVVIPFFGGLDDREALAYGMKMVEHPGITLTVYKFVAARGTLKRFE 670

Query: 666 LEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVI 725
             E+  +E+ +K  DE  + + M    GN ++          + ++   +S+ S  +L +
Sbjct: 671 KSEHDEKEKKEKETDEEFVRELMNDPRGNESLAYEERVVESKDDIIATLKSM-SKCNLFV 729

Query: 726 VGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQS 773
           VGR    +S L++ T    +  ELG +G +L+S++F+    SVLV+Q 
Sbjct: 730 VGRNAAVAS-LVKST----DCPELGPVGRLLSSSEFST-TASVLVVQG 771

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYD4|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1

 Score =  298 bits (764), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 225/801 (28%), Positives = 386/801 (48%), Gaps = 30/801 (3%)

Query: 6   LNDTRHRHWIEDDRFTTCVSYNESTKFSYHGINLDEEA--VSSVLPVVMLQVSLAFSISQ 63
           LN T   + IE+ RF   V Y++S  F        E    ++S LP  + Q+ +A    +
Sbjct: 7   LNVTNPNYDIEESRFGKIVCYDQSLLFEKREQKGWESGSTLASSLPFFITQLFVANLSYR 66

Query: 64  ILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFV 123
           +LY L RPL  P FV+  L G++  PS LG  +   A+V   R  +  +  + +  +Y +
Sbjct: 67  VLYYLTRPLYLPPFVAQILCGLLFSPSVLGNTRFIIAHVFPYRFTMVLETFANLALVYNI 126

Query: 124 FINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS 183
           F+  + MD  M+  T  K   ++ T  +V L +   + +      P     G     VA 
Sbjct: 127 FLLGLGMDLRMVRITELKPVIIAFTGLLVALPVGAFLYYLPGNGHPDKIISGCVFWSVAL 186

Query: 184 KCA-YPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIEL 242
            C  +P L   +++LKLL S++G+ A+ +A++ ++   + L+    S +K  +    +  
Sbjct: 187 ACTNFPDLARILADLKLLRSDMGRTAMCAAIVTDLCTWVLLVFGFASFSKSGTWNKMMPF 246

Query: 243 SLCAMSLFTFL---VLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYT 299
            +   ++F  L   V+ P I WI  +  +   V D ++  IL G ++  +  D+  V+  
Sbjct: 247 VIITTAIFVLLCIFVIRPGIAWIFAKTVKAGHVGDTHVWFILGGVVLCGLITDACGVHSI 306

Query: 300 IGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALEL 359
            GA + G+ IP    + + + EK    LS   +P FYI  G + DI  +  +     + +
Sbjct: 307 TGAFLFGLSIPHDHIIRNMIEEKLHDFLSGILMPLFYIICGLRADIGFMLQFTDKFMMVV 366

Query: 360 IIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYS 419
           +I ++++ K+V +++ +       R+A      +N KG   LV     R  + +D   Y+
Sbjct: 367 VICSSFLVKIVTTVITSLFMHIPMRDAFAIGALMNTKGTLSLVVLNAGRDTKALDSPMYT 426

Query: 420 VLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGII 479
            + +  L ++ +V PL++  Y P+++L      T+Q    ++ELR+L  +H   ++SGI 
Sbjct: 427 HMTIALLVMSLVVEPLLAFAYKPKKKLAHYKHRTVQKIKGETELRVLACVHVLPNVSGIT 486

Query: 480 HLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEG 539
           +L++ SN T+ +P+  + +HLVEL GR    +   +  + K  AN +D +     + AE 
Sbjct: 487 NLLQVSNATKQSPLSVFAIHLVELTGRTTASLLIMN-DECKPKANFSDRVRAESDQIAET 545

Query: 540 ------SNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQF----IPPNEETEGRA 589
                 +NDA+T+Q    +S Y TMHE IC L +D  +  I+L +     P     EG +
Sbjct: 546 FEAMEVNNDAMTVQTITAVSPYATMHEDICVLAEDKRVCFIILPYHKHLTPDGRMGEGNS 605

Query: 590 ACLHGLNNNVLGYAPCTVGIFVDKRLNNC-SNSAKPANFCYNVAVFFIGGPDDREAMALV 648
           +    +N NVL +APC+VGI VD+ +    S S +  +    VA+ F+GGPDDREA++  
Sbjct: 606 SHAE-INQNVLSHAPCSVGILVDRGMAMVRSESFRGESMKREVAMLFVGGPDDREALSYA 664

Query: 649 SHMSSNPGVRITLSR-IYLEENLV-------EEEDDKCLDEVVMNDFMASNFGNPNVVCR 700
             M     +++T+ R +   E L+       E E +K +D+  + +F      + +V   
Sbjct: 665 WRMVGQHVIKLTVVRFVPGREALISSGKVAAEYEREKQVDDECIYEFNFKTMNDSSVKYI 724

Query: 701 RIDANDSNQLVNAFRSLVSDN--DLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLAS 758
               ND    +   R +  +N  DL +VGR     S +      W    ELG IGD LAS
Sbjct: 725 EKVVNDGQDTIATIREMEDNNSYDLYVVGRGYNSDSPVTAGLNDWSSSPELGTIGDTLAS 784

Query: 759 ADFAEGMVSVLVIQSVRILKK 779
           ++F     SVLVIQ     K+
Sbjct: 785 SNFTM-HASVLVIQQYSATKR 804

Operates as a K(+)/H(+) antiporter or Na(+)/H(+) antiporter of the chloroplast envelope that functions in pH homeostasis and chloroplast development. Monovalent cation transporter with a preference for Cs(+), K(+) and Rb(+) relative to Na(+) or Li(+). Required for pollen tube guidance, but not for normal pollen development. May also be involved in the development or function of the female gametophyte.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFR9|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1

 Score =  295 bits (754), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 215/777 (27%), Positives = 391/777 (50%), Gaps = 42/777 (5%)

Query: 31  KFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPS 90
           K + +G+   +  +   LP+ +LQ+ +   ++++L  LLRPL+QP+ ++  + GI+LGPS
Sbjct: 14  KATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRVIAEVIGGIMLGPS 73

Query: 91  FLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVF 150
            LGR K F   V   + +   +  + +G ++F+F+  +++D   + RT KK   ++L   
Sbjct: 74  LLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRRTGKKALGIALAGI 133

Query: 151 IVPLLISLLVGHREQYKIPRIHDQGISISFVA---SKCAYPVLVDAISELKLLNSELGQL 207
            +P  + +      +  I +  +    + F+    S  A+PVL   ++ELKLL +E+G+L
Sbjct: 134 TLPFALGIGSSFVLKATISKGVNSTAFLVFMGVALSITAFPVLARILAELKLLTTEIGRL 193

Query: 208 AISSALLHEIVGLLRLLMAPLSKAKYRS--VAIRIELSLCAMSLFTFLVLWPTIQWIIRR 265
           A+S+A ++++   + L +A        S  V++ + LS CA  +    ++ P  +WI RR
Sbjct: 194 AMSAAAVNDVAAWILLALAIALSGSNTSPLVSLWVFLSGCAFVIGASFIIPPIFRWISRR 253

Query: 266 IPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEA 325
             E +P+++ YI A L   LV     D++ ++   GA ++G++IP   P   ALVEK E 
Sbjct: 254 CHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKEGPFAGALVEKVED 313

Query: 326 ILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRN 385
           ++S  FLP +++  G + ++ +I   +++  L L+   A  GK++ ++  +  F+   R 
Sbjct: 314 LVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGTLGVSLAFKIPMRE 373

Query: 386 ALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRR 445
           A+     +N KG+ EL+     + R++++ QT++++VL  L  T I TP++   Y P RR
Sbjct: 374 AITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPVVMAVYKPARR 433

Query: 446 LE---SIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNP-ICAYVVHLV 501
            +         ++    +++LRIL   H    I  +I+L++AS   E    +C Y +HL 
Sbjct: 434 AKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIEKGEGLCVYALHLR 493

Query: 502 ELVGRAAPVVETYSTQKT-------KAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQ 554
           EL  R++ ++  +  +K        + +    D ++ A   + + S   V ++P   IS 
Sbjct: 494 ELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSR--VNVRPMTAISS 551

Query: 555 YETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHG----LNNNVLGYAPCTVGIF 610
              +HE IC         +++L F   +++ +G      G    +N  VL  APC+VGIF
Sbjct: 552 MSDIHEDICTTAVRKKAAIVILPF-HKHQQLDGSLETTRGDYRWVNRRVLLQAPCSVGIF 610

Query: 611 VDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL 670
           VD+ L   S+     +  Y+V V F GGPDDREA+A    M+ +PG+ +T+ R  +    
Sbjct: 611 VDRGLGG-SSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTVFRFVVSPER 669

Query: 671 VEEEDDKCLDEVVMNDFMASNFGNPNVV---CRRIDANDSN------QLVNA---FRSLV 718
           V E  +  +      +    N  +   +    R+I + D +      Q+ NA    RS +
Sbjct: 670 VGEIVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIENAAVDVRSAI 729

Query: 719 SD---NDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772
            +   ++L +VGR       +    +   E  ELG +G +L S + +    SVLVIQ
Sbjct: 730 EEVRRSNLFLVGRMP--GGEIALAIRENSECPELGPVGSLLISPE-SSTKASVLVIQ 783

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58P69|CHX10_ARATH Cation/H(+) antiporter 10 OS=Arabidopsis thaliana GN=CHX10 PE=2 SV=2

 Score =  285 bits (729), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 210/741 (28%), Positives = 362/741 (48%), Gaps = 35/741 (4%)

Query: 48  LPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVT---G 104
           LP++ +Q+ L F    + ++ LR +   +  S  ++GI+LGP     ++     ++    
Sbjct: 37  LPLLEIQIILIFFCIVMSHMFLRCIGISQIASYMIAGIVLGPQLFDVLEKSSGKLSVDPA 96

Query: 105 GRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLL----ISLLV 160
             G+   +  S  G + F F+ TV+  + +   + K    + +  F  PL      +   
Sbjct: 97  LDGIAALRCISVFGTLMFTFLMTVRTSRRVAFHSGKLPVVIGIVSFFAPLFGLGFQNFFS 156

Query: 161 GHREQYKIPRIHDQG--ISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIV 218
            + + + +P     G   +I    S    P     + ELK++NSELG+LA+S+ ++++I+
Sbjct: 157 DNIDPHYMPLTKALGERTAIVITQSSILLPSTTYILLELKIINSELGRLALSACVINDIL 216

Query: 219 GLLRLLMAPLSKAKY----RSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKD 274
           G+  +++A + +A Y     + A R  +++    L  FLV  P +QW+I R PE KPV+D
Sbjct: 217 GIFSMIVASI-QATYIHVSHATAYRDTVAVIIFFLVVFLVFKPMVQWVIDRTPEDKPVED 275

Query: 275 FYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPF 334
            YI A++  AL  A       + Y +G  M+GI+IP GPPLGSAL  K E +  N FLP 
Sbjct: 276 MYIHAVIITALASAAYFVFFNMKYILGPLMIGIIIPEGPPLGSALEAKFERLTMNVFLPI 335

Query: 335 FYIHVGQQID----IYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFS 390
                  + D    +   N+      L  +I+   + K+VA +     ++     +L  S
Sbjct: 336 SITFSAMRCDGARILSQFNDIFFNIFLTFLIL---VIKLVACLAPCLYYKLPLSESLAVS 392

Query: 391 CFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIA 450
             ++ K  ++ V +        I   TYS L+L +L    IV  ++   Y+P+R+  +  
Sbjct: 393 FILSYKSFADFVLYEAVLDDTYISQATYSFLILYSLLNAGIVPTVLRRMYDPRRKYVNYQ 452

Query: 451 MGTLQTALPDSELRILCGIHDEDHISGIIHLIK-ASNPTEMNPICAYVVHLVELVGRAAP 509
              +     +S+LRIL  +H  +++S  I  ++  S+P    PI   V+HLV+LVG+  P
Sbjct: 453 KRDILHLERNSDLRILTCLHKPENVSETIAFLQLLSSPNLDFPIAVTVLHLVKLVGQINP 512

Query: 510 VVETYSTQKTKAMANSTDHIMR-AVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKD 568
           ++ ++  +  +   +S  H    A  ++   S ++VT+  F   S    MHE IC L  D
Sbjct: 513 IIVSHDKKLKRLNKDSYIHTANLAFRQFVLESLESVTVTTFTAFSHENLMHEDICTLALD 572

Query: 569 NCITLILLQFIPPNEE------TEGRAACLHGLNNNVLGYAPCTVGIFVDK-RLNNCSNS 621
              ++I+   +P   +       E     +  LN ++L  APC++GI VD+ + +  S  
Sbjct: 573 KTTSMIV---VPSGRKWTVDGLFESDNTAIRHLNQSLLDRAPCSIGILVDRGQFSRKSIV 629

Query: 622 AKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDE 681
                +  +V V FIGG DDREA++LV  M +NP +R+T+ R+  +   +E + D  LD 
Sbjct: 630 TSKKRYIIDVGVLFIGGKDDREALSLVKRMKNNPRIRVTVIRLVFDHE-IESDWDYILDN 688

Query: 682 VVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETK 741
             + D  ++          RI    S ++V A + L  + DL++VGR    +S+ L    
Sbjct: 689 EGLKDLKSTEDNKDIDYIERI-VTSSVEVVKAVQLLAEEYDLMVVGRDHDMTSQDLSGLM 747

Query: 742 PWVEYDELGIIGDMLASADFA 762
            WVE  ELG+IGD+LA+ D +
Sbjct: 748 EWVELPELGVIGDLLAARDLS 768

May operate as a cation/H(+) antiporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O22920|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1

 Score =  280 bits (715), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 214/740 (28%), Positives = 372/740 (50%), Gaps = 34/740 (4%)

Query: 54  QVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQA 113
           Q+S+    S++++ +L+PLKQ    +  L+G++LGPSFLG   ++        G +  Q 
Sbjct: 58  QMSVIIVTSRLIFRVLQPLKQGMISAQVLTGVVLGPSFLGHNVIYMNMFLPAGGKIIIQT 117

Query: 114 ASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVP--------LLISLLVGHREQ 165
            S +G +  +F+  +K+D  +I +   K   +    +  P        + IS  +G    
Sbjct: 118 LSNVGFVIHLFLLGLKIDGSIIRKAGSKAILIGTASYAFPFSLGNLTIMFISKTMGLPSD 177

Query: 166 YKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLM 225
             +       IS+S   S  ++PV    ++EL +LNSELG+LA   +++ E+      L 
Sbjct: 178 --VISCTSSAISLS---SMTSFPVTTTVLAELNILNSELGRLATHCSMVCEVCSWFVALA 232

Query: 226 APLSKAKYRSVAIRIELSL-CAMSLFTFLVLWPTIQWIIRRIPERKPVKDFY-IVAILTG 283
             L   + R++     LS+   + L  + V  P I W+ +R  +    KD      +L  
Sbjct: 233 FNL-YTRDRTMTSLYALSMIIGLLLVIYFVFRPIIVWLTQRKTKSMDKKDVVPFFPVLLL 291

Query: 284 ALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQI 343
             + +++ ++M V+   GA  LG+ +P GPPLG+ L  K E   SN FLP F    G Q 
Sbjct: 292 LSIASLSGEAMGVHAAFGAFWLGVSLPDGPPLGTELAAKLEMFASNLFLPCFIAISGLQT 351

Query: 344 DIYSI--NNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSEL 401
           + + I  ++      +E+I++  Y  K + +  A+   +T   +AL  +  +  +G+ E+
Sbjct: 352 NFFEITESHEHHVVMIEIILLITYGCKFLGTAAASAYCQTQIGDALCLAFLMCCQGIIEV 411

Query: 402 VTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGT-LQTALPD 460
            T + W+  +++D + ++++++T L VT I   L+   Y+P +R +S +  T L T   +
Sbjct: 412 YTTIVWKDAQVVDTECFNLVIITILFVTGISRFLVVYLYDPSKRYKSKSKRTILNTRQHN 471

Query: 461 SELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRA-APVVETYSTQKT 519
            +LR+L G+++ +++  +++L++A+ PT  NPI  + +HLVEL GRA A +   +   K 
Sbjct: 472 LQLRLLLGLYNVENVPSMVNLLEATYPTRFNPISFFTLHLVELKGRAHALLTPHHQMNKL 531

Query: 520 KAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFI 579
                 + HI+ A  ++ +    A+  Q F   + Y +++  IC L  D   TLI++ F 
Sbjct: 532 DPNTAQSTHIVNAFQRFEQKYQGALMAQHFTAAAPYSSINNDICTLALDKKATLIVIPF- 590

Query: 580 PPNEETEGRAACLHG----LNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFF 635
                 +G    ++G    +N NVL  APC+V IF+D+       S    N   NVA+ F
Sbjct: 591 HKQYAIDGTVGQVNGPIRTINLNVLDAAPCSVAIFIDRGETEGRRSVLMTNTWQNVAMLF 650

Query: 636 IGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDF--MASNFG 693
           IGG DD EA+AL   M+  P + +T+     +  L +E+     +  +++DF   A+N G
Sbjct: 651 IGGKDDAEALALCMRMAEKPDLNVTMIHFRHKSALQDEDYSDMSEYNLISDFKSYAANKG 710

Query: 694 NPNVVCRRI-DANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGII 752
             + V   + D  ++ Q+++   SL    D+V+VGR     S +L     W E  ELG+I
Sbjct: 711 KIHYVEEIVRDGVETTQVIS---SLGDAYDMVLVGRDHDLESSVLYGLTDWSECPELGVI 767

Query: 753 GDMLASADFAEGMVSVLVIQ 772
           GDML S DF     SVLV+ 
Sbjct: 768 GDMLTSPDFH---FSVLVVH 784

High-affinity potassium transporter that plays a role in K(+) acquisition. May operate as a K(+)/H(+) symporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	836
255576723	789	K(+)/H(+) antiporter, putative [Ricinus	0.882	0.935	0.374	1e-136
255559551	1512	monovalent cation:proton antiporter, put	0.903	0.499	0.372	1e-130
449459268	837	PREDICTED: cation/H(+) antiporter 15-lik	0.880	0.879	0.358	1e-126
356569280	1584	PREDICTED: uncharacterized protein LOC10	0.937	0.494	0.348	1e-124
296088536	820	unnamed protein product [Vitis vinifera]	0.889	0.907	0.343	1e-119
147785381	837	hypothetical protein VITISV_011183 [Viti	0.889	0.888	0.335	1e-117
359477011	837	PREDICTED: cation/H(+) antiporter 15-lik	0.889	0.888	0.335	1e-117
224096008	769	cation proton exchanger [Populus trichoc	0.879	0.955	0.341	1e-117
357461421	827	Cation proton exchanger [Medicago trunca	0.901	0.911	0.336	1e-116
255550512	834	Na(+)/H(+) antiporter, putative [Ricinus	0.903	0.905	0.334	1e-116

>gi|255576723|ref|XP_002529249.1| K(+)/H(+) antiporter, putative [Ricinus communis] gi|223531285|gb|EEF33127.1| K(+)/H(+) antiporter, putative [Ricinus communis]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 294/785 (37%), Positives = 450/785 (57%), Gaps = 47/785 (5%)

Query: 21  TTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSN 80
           T C SY E  +   HGI      +  + PV  +Q+ LAF +S  +Y +LRPL+QP+FV N
Sbjct: 22  TVCFSYQEEKR--AHGIFYKANVLEFIYPVFTIQIILAFLVSWTVYFVLRPLRQPRFVCN 79

Query: 81  TLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIK 140
            L+GIILGPS LGR K F       + M+     + +G  Y +FI  VKMD   +  + K
Sbjct: 80  ILAGIILGPSVLGRNKAFMETFFPPKEMLIFNTVARLGTAYLIFIIAVKMDVKTLLSSAK 139

Query: 141 KTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGIS-ISFVA---SKCAYPVLVDAISE 196
           K + + L  +I P +I+L+      YK      +G++ ++F+    S   +PV+   I E
Sbjct: 140 KIWPIGLCSYIFPFVITLIFSS-AMYKELSACLKGMNMVTFLCGAISVTYFPVVAQFIEE 198

Query: 197 LKLLNSELGQLAISSALLHEIVG-LLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVL 255
           L LL +ELGQLA+SS++L ++    + ++   +++  Y   +I   L++CA  +    V+
Sbjct: 199 LDLLTTELGQLALSSSMLIQMTSHAITIIGVAVTRDSYIH-SIYYFLAICATIILAVYVI 257

Query: 256 WPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL 315
            P I   I+  PE KP+K+ Y++AIL G L+MAV  D M  ++  GA + G++IP GPPL
Sbjct: 258 RPAILLSIKITPEGKPIKEVYVIAILIGTLIMAVITDVMWYDFLSGALLTGLIIPDGPPL 317

Query: 316 GSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILA 375
           G+ LVEKSE ++   FLP F++ VG   D+ S+ N +A   + L++    + K++ ++LA
Sbjct: 318 GAILVEKSELMVMEIFLPLFFVQVGYLTDVSSLQNIKAVTVVLLLVTVCCLTKIIGTLLA 377

Query: 376 TTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPL 435
           +      F+ AL     +N KGV +L TF R++ R +++ + Y+ LVL NL V AI  PL
Sbjct: 378 SLYLNIKFQTALFLGLILNFKGVVDLTTFHRFQSRNILEKRCYTALVLFNLLVVAIFYPL 437

Query: 436 ISVYYNPQRRLESIAMGT-----LQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEM 490
           I  +Y P+ RL      T     LQ+     ELR L  I+ E+++ G+I L+ ASN   +
Sbjct: 438 IEFFYKPRIRLAGRYSKTKYSRALQSTPQAEELRALTCIYHENNVPGMIALLDASNHRAI 497

Query: 491 NPICAYVVHLVELVGRAAPVVETYSTQKTKAMAN-----STDHIMRAVIKYAEGSNDAVT 545
           +P+CAYVVH+V+LVGR AP +  Y   KT+ M+N     S+  IM A I Y++ ++  V+
Sbjct: 498 SPLCAYVVHVVDLVGRTAPSLLPYK-GKTR-MSNHDPCSSSSRIMSAFINYSKTASGRVS 555

Query: 546 IQPFIMISQYETMHESICKLVKDNCITLILL-----QFIPPNEETEGRAACLHGLNNNVL 600
           +QPF M++ + TMH  IC L ++N I  I++     Q +  N + +G    L   N+ + 
Sbjct: 556 LQPFTMVAPFRTMHNIICNLAEENLIPFIIVPFHENQILDLNSKQKG---VLQDFNSQLQ 612

Query: 601 GYAPCTVGIFVDK----RLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPG 656
            +APCTVGI  D+    RLN C            + V FIGG DDREA+AL   MS NP 
Sbjct: 613 AHAPCTVGILYDRGLQPRLNKC-----------RIVVVFIGGADDREALALAIRMSGNPD 661

Query: 657 VRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRS 716
           + IT+ RI   ++      +  LDE+++ +F+ +N  NP ++C+++  NDS Q++NA +S
Sbjct: 662 MNITMLRINSAKDKDRSITEAQLDELLVKEFIDNNLNNPRILCQQVSVNDSLQMLNAVQS 721

Query: 717 LVSDNDLVIVGRQQPFSSRLLE-ETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVR 775
           L  + DLV+VG+     +R  E +   WVEY ELG+IGDMLAS DF   M SVLV++   
Sbjct: 722 LRRNYDLVMVGKNS--GARAFEKDLTEWVEYAELGVIGDMLASTDFYNEMTSVLVMEHCA 779

Query: 776 ILKKD 780
           ++ K 
Sbjct: 780 VVNKS 784

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559551|ref|XP_002520795.1| monovalent cation:proton antiporter, putative [Ricinus communis] gi|223539926|gb|EEF41504.1| monovalent cation:proton antiporter, putative [Ricinus communis]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 288/774 (37%), Positives = 432/774 (55%), Gaps = 19/774 (2%)

Query: 21  TTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSN 80
           T CVS  + T  S  GI   E    S+  V   QV L+ SIS ++Y +LRPL+QPK V N
Sbjct: 15  TMCVSKCD-TVMSTQGIFFGENPFDSLFSVFTTQVILSLSISWVVYFVLRPLRQPKIVCN 73

Query: 81  TLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIK 140
            ++GIILGPS LGR K F   +     M+     ST+G   + FI  VKMD  +I R  +
Sbjct: 74  IMAGIILGPSVLGRNKTFLKTIFPKEEMLIFNTLSTLGAACYTFIIAVKMDTSIILRMSR 133

Query: 141 KTYSVSLTVFIVPLLISLLVGH-----REQYKIPRIHDQGISISFVASKCAYPVLVDAIS 195
             +++ L+ ++VP +     G+     ++   I  +    +S +F  S   +P++   + 
Sbjct: 134 NAWTIGLSSYLVPFVAIYFYGYILNAKQKSGYIMELPSLFLSCAF--STTYFPIIAHVME 191

Query: 196 ELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVL 255
           EL L  +ELG+L ++SA+L E++  +  ++  +S       +IR  + + A  +F F V+
Sbjct: 192 ELDLETTELGRLVMTSAVLIEMLSHVVSVVVIISTNSDIIRSIRTFVMVVAPIIFLFYVV 251

Query: 256 WPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL 315
            P I+ II+R PE KPV + Y++A++ GAL+M    D     Y  GA ++G +IP GPPL
Sbjct: 252 KPVIRQIIKRTPEGKPVHETYVIAVMLGALIMTSVSDYAWGIYLPGAFLMGAIIPDGPPL 311

Query: 316 GSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILA 375
           G+ LVEK E ++   FLP F++ VG Q D+ SI + R F    L I+  Y+ K+V ++LA
Sbjct: 312 GATLVEKYELMIMEIFLPLFFVRVGYQTDVSSIKDLRTFYFTLLFIVLCYLAKIVGTVLA 371

Query: 376 TTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPL 435
           +       +NA L    +N KGV EL  +  +   + +D Q Y+ LVL ++   A  +P 
Sbjct: 372 SVYVNIRLKNAFLLGVILNFKGVFELSIYQIFLTNQAVDKQCYTALVLFSVFSIAFFSPF 431

Query: 436 ISVYYNPQRRL-----ESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEM 490
           I++ Y PQ RL     E+    TLQ+   D EL IL  I+ E ++ GII+L++ASNP  +
Sbjct: 432 INIVYKPQARLTNPDCETKYSRTLQSTPLDGELHILTSIYHECNVPGIINLLQASNPNAV 491

Query: 491 NPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDAVTIQPFI 550
           +PI AYV+H +ELVGR  P +   S    K   +++  IMRA   Y+  SN  +TI PFI
Sbjct: 492 SPISAYVIHAIELVGRNTPSISPCSVYGKKLKNSASQQIMRAFSNYSRNSNGLITIHPFI 551

Query: 551 MISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610
           M++ Y+TM   IC L +D  I LI++ F   +    G    L   N+ +   APCTVGI 
Sbjct: 552 MLAPYKTMDNIICNLAEDRHIPLIIVPFRRISGGV-GSNHLLRDFNSRLQANAPCTVGIL 610

Query: 611 VDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL 670
           ++K  +N         F  N+AV FIGG DDREA+AL   MS+NP V ITL R     + 
Sbjct: 611 IEKGSHNSVTMLLDNYFSCNIAVLFIGGDDDREALALAIRMSNNPNVNITLIR---SIDS 667

Query: 671 VEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQ 730
            +   D+  DE+++ +FM  N  N +V C  +  NDS Q+++  +SL  + DLVIVG+  
Sbjct: 668 RDSGSDRQQDELLIKEFMEENVNNASVTCEEVIVNDSVQMLDLIQSLEHNYDLVIVGK-N 726

Query: 731 PFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRILKKDPKTV 784
           P ++   +E   W+E  ELG+IGD+LA +D      ++LV  ++R LK+ PK V
Sbjct: 727 PTATNFEKEMIQWMENPELGVIGDILALSDDYSSSKNMLVYTALRPLKQ-PKFV 779

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459268|ref|XP_004147368.1| PREDICTED: cation/H(+) antiporter 15-like [Cucumis sativus] gi|449513321|ref|XP_004164295.1| PREDICTED: cation/H(+) antiporter 15-like [Cucumis sativus]

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 278/775 (35%), Positives = 434/775 (56%), Gaps = 39/775 (5%)

Query: 30  TKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGP 89
           T  + +G+   +  +   LP+ +LQ+++   +++IL  LL+P +QP+ +S  L G+ILGP
Sbjct: 21  TMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRILVFLLKPFRQPRVISEILGGVILGP 80

Query: 90  SFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTV 149
           S LGR   F   V   R ++  +  + +G +YF+F+  V+MD  +I RT KK  ++++  
Sbjct: 81  SVLGRSSKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAG 140

Query: 150 FIVPLLISLLVG---HREQYKI---PRIHDQGISISFVASKCAYPVLVDAISELKLLNSE 203
            I+P  I        H+E  K+     I   GI++S  A    +PVL   ++ELKL+NSE
Sbjct: 141 MILPFGIGAAFSFQLHKESQKLNYNTYIMFLGIALSVTA----FPVLARILAELKLINSE 196

Query: 204 LGQLAISSALLHEIVGLLRLLMA-PLSKAKYRSVA-IRIELSLCAMSLFTFLVLWPTIQW 261
           LG++A++SAL +++   + L +A  LS+    S A + + LS  A  LF   ++ P I W
Sbjct: 197 LGRMAMASALFNDMCAWVLLALAIALSENDSSSFASLWVVLSSAAFVLFCIFIVRPMISW 256

Query: 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVE 321
           +IR+ PE + V +FYI  ILTG ++     D++  +   GA + G+VIP G  LG AL+E
Sbjct: 257 MIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGS-LGVALIE 315

Query: 322 KSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRT 381
           K E  +S   LP F+   G + +I SI    A+ ++  I + A++GKV+ ++LA+ C++ 
Sbjct: 316 KLEDFVSGLLLPLFFAISGLKTNISSIEGIFAWISILCITLLAFLGKVIGTLLASICYQM 375

Query: 382 SFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYN 441
           S+R  +     +N KG+ E++     + ++++D QT++V+V+  L +T I+TP++++ Y 
Sbjct: 376 SYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALIMTGIITPVVTIIYR 435

Query: 442 PQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLV 501
           P RR       T+Q + PDSE R+L  IH   ++  II+L+ AS+PT+ +PIC YV+HLV
Sbjct: 436 PTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASHPTKRSPICIYVLHLV 495

Query: 502 ELVGRAAPVVETYSTQKTKAMA-----NSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYE 556
           EL GRA+ ++  ++T+K+   A       +DHI+ A   Y E   D V++QP   IS Y 
Sbjct: 496 ELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENY-EQHVDCVSVQPLTAISPYS 554

Query: 557 TMHESICKLVKDNCITLILLQFIPPNEETEGRAA---CLHGLNNNVLGYAPCTVGIFVDK 613
           TMHE IC L +D  +  I++ F        G  A       +N NVL  APC+VGI VD+
Sbjct: 555 TMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEASNPAFRLVNQNVLANAPCSVGILVDR 614

Query: 614 RLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIY-------- 665
            LN  + +       YN+ V F GG DDREA++    MS +PGV +T+ R          
Sbjct: 615 GLNGANRATSNKGTHYNIIVLFFGGQDDREALSYAWRMSEHPGVNLTVMRFIAAQEIMEP 674

Query: 666 -LEENL-------VEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSL 717
            LEEN         E   D+ LDE  +++F A N  + ++       N+  + V A RS+
Sbjct: 675 KLEENTSRISTMETEMNRDRKLDEDHISEFRARNPNSESITYTEKVLNNGEETVAAIRSM 734

Query: 718 VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772
              +DL IVGR +   S L      W E  ELG IGD+LAS+DFA    SVLV+Q
Sbjct: 735 NDAHDLFIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFA-ATTSVLVVQ 788

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569280|ref|XP_003552831.1| PREDICTED: uncharacterized protein LOC100781310 [Glycine max]

 Score =  454 bits (1168), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 290/831 (34%), Positives = 461/831 (55%), Gaps = 47/831 (5%)

Query: 1   MGTFLLNDTRHRHWIEDDRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFS 60
           M T   N     +W    ++  CV   +       GI + +     VLPV + Q+     
Sbjct: 1   MATSRGNGIVSSYWDSHGQWQVCVE--DDRNVGSLGIFIGDRPFEFVLPVTLCQLFTVIL 58

Query: 61  ISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGI 120
           +S+ LY LLRPL+ PKF+ N L GIILGP+FLGR K +   +   R   +   AS  G +
Sbjct: 59  VSRTLYFLLRPLRTPKFICNVLGGIILGPTFLGRNKTYWQVLFPPRQTEYLVMASLTGAV 118

Query: 121 YFVFINTVKMDKGMIPRTIKKTYSVS----LTVFIVPLLISLLVGHREQYKIPRIHDQGI 176
           YFVF+  +KMD  M  R  K T+ +     L  F+V L +  L  H +Q     +    +
Sbjct: 119 YFVFLVALKMDVLMTIRAAKSTWRLGVIPFLASFVVILALLCLYYHPQQISSASLTIARV 178

Query: 177 SISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSV 236
           S+S + S   +PV+ DA+ EL L  +ELGQ+A+SS+++++I+  L ++M   +       
Sbjct: 179 SVSCLMSLSNFPVVSDAMLELNLTATELGQIALSSSMINDIILWLFIVMHSFTSNVDVKK 238

Query: 237 AIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRV 296
           +I +  + C +  F F VL PT++ I  R P  KPVK+ Y+V IL G LVMA   D M V
Sbjct: 239 SIALLGNWCLLVFFNFFVLRPTMKLIAMRTPVGKPVKELYVVLILLGVLVMAGVGDLMGV 298

Query: 297 NYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAA 356
            + +G  + G+V+P+GPPLG+ L EKSE + + F LPFF++++G   D+ ++ +WR F  
Sbjct: 299 TFLMGPLIFGLVVPSGPPLGTTLAEKSEVLTTEFLLPFFFVYIGINTDLSALEDWRLFLT 358

Query: 357 LELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQ 416
           L+ +  A  + K++A +L +  +    ++  L    +NIKG+++L++  R+++++++D  
Sbjct: 359 LQGVFFAGDLAKLLACVLVSLAYNIRPKHGTLLGLMLNIKGITQLISLARFKKQKMLDED 418

Query: 417 TYSVLVLTNLAVTAIVTPLISVYYN--PQRRLESIAMG---TLQTALPDSELRILCGIHD 471
           T+S LV   + +TAIVTPL+++ Y   P+   ES+  G   T+Q+   + E  I+C +H+
Sbjct: 419 TFSQLVFCVVLITAIVTPLVNILYKHRPRVHAESLFEGELRTIQSTPRNREFHIVCCVHN 478

Query: 472 EDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANS-----T 526
           E ++ GI  L++  NP + +PIC Y VHL+ELVG++AP++     +  +    S     T
Sbjct: 479 EANVRGITALLEECNPVQESPICVYAVHLIELVGKSAPILLPIKHRHGRRKFLSVNYPNT 538

Query: 527 DHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIP-PNEET 585
           +HIM+A   Y+  S+  V + P+I ++ Y++MH++I  L +DN +  I++ F    N + 
Sbjct: 539 NHIMQAFENYSNNSSGPVKVLPYINVAPYKSMHDAIFNLAQDNMVPFIIIPFHENGNIDL 598

Query: 586 EGR-AACLHGLNNNVLGYAPCTVGIFVDK--RLNNCSNSAKPANFCYNVAVFFIGGPDDR 642
            G  AA +  +N     +APCT+GI VD+  RL   +N+    N  +NV VFFIGG  DR
Sbjct: 599 VGHVAASIRKMNTRFQAHAPCTLGILVDRHSRLGASNNN----NMYFNVGVFFIGGAHDR 654

Query: 643 EAMALVSHMSSNPGVRITLSR-------------IYLEENLVEEEDDKCLDEVVMNDFMA 689
           EA+AL   MS     R++L R             I   E   EEE+D  LDE ++++F +
Sbjct: 655 EALALGIRMSERADTRVSLFRFVIVNKKPCGCKIILTREEREEEEEDTMLDEGLIDEFKS 714

Query: 690 SNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVE-YDE 748
             +G  NV    I  +D  +++ A  SL  + DLV+VGR+    S   +E   ++E  D 
Sbjct: 715 MKYGIGNVCWYEITVDDGVEVLEAVHSLEGNYDLVMVGRRHNDGSLNGKEMTTFMENADA 774

Query: 749 LGIIGDMLASADFAEGMVSVLVIQSVRILKKDPKTVKALSNSSSNKAPKTV 799
           LGI+GDML+S +F  GMV VLV Q   +          +S+SS+NK  + V
Sbjct: 775 LGILGDMLSSVEFCMGMVPVLVTQCGGV---------KISSSSNNKLDRVV 816

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088536|emb|CBI37527.3| unnamed protein product [Vitis vinifera]

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 266/774 (34%), Positives = 433/774 (55%), Gaps = 30/774 (3%)

Query: 18  DRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKF 77
           D    C S    T  + +GI   +  +   LP+ +LQ++L    +++L  +L+PL+QP+ 
Sbjct: 12  DDMIVCYS---PTMITTNGIWQGDNPLDYSLPLFILQLTLVVVTTRLLVFILKPLRQPRV 68

Query: 78  VSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPR 137
           +S  L G++LGPS LG+       +   R ++  +  + +G +YF+F+  V+MD  +I R
Sbjct: 69  ISEILGGVLLGPSVLGQNLHLANLIFPLRSVMVLETMANVGLLYFLFLVGVEMDLTVIRR 128

Query: 138 TIKKTYSVSLTVFIVPLLISL---LVGHREQYKIPR---IHDQGISISFVASKCAYPVLV 191
           T KK  ++++   I+P +I     L+ H E  ++ R   +   G+++S  A    +PVL 
Sbjct: 129 TGKKAIAIAIIGMILPFIIGCAFSLILHHEDRQMNRSTFVLFLGVALSVTA----FPVLA 184

Query: 192 DAISELKLLNSELGQLAISSALLHEIVGLLRLLMA-PLSKAKYRSVA-IRIELSLCAMSL 249
             ++ELKL+N+ELG++A+SSAL++++   + L +A  L++ +  S+A + + LS     +
Sbjct: 185 RILAELKLINTELGRMAMSSALINDMCAWVLLAVAIALAENESSSLASLWVILSSVFFVV 244

Query: 250 FTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVI 309
               ++ P I W+IRR PE +   +FYI  ILTG ++     D++  +   GA + G+VI
Sbjct: 245 VCIFIVRPVISWMIRRTPEGESFSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVI 304

Query: 310 PAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKV 369
           P G  LG  L+EK E  +S   LP F+   G + D+  I+    +  L L+I+ A  GK+
Sbjct: 305 PNGQ-LGVTLIEKLEDFVSGLLLPLFFAISGLKTDVTKIHGALTWGFLFLVIILACAGKI 363

Query: 370 VASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVT 429
             +++    ++   R  ++    +N KG+ E++     R + ++D +T++++V   + +T
Sbjct: 364 AGTLIVALFYQMPLREGIVLGLLMNTKGLVEMIVLNVGRDQHVLDDETFAIMVTVAVIMT 423

Query: 430 AIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTE 489
           +I+ P+++  Y P R+       T+Q + PD ELRIL  IH   ++  II+L++AS+P++
Sbjct: 424 SIIAPIVTHIYKPARKFIPYKRRTIQRSKPDGELRILVCIHTPRNVPTIINLLEASHPSK 483

Query: 490 MNPICAYVVHLVELVGRAAPVVETYSTQKTKAMA-----NSTDHIMRAVIKYAEGSNDAV 544
            +PIC YV+HLVEL GRA+ ++  ++T+K+   A       +DHI+ A   Y + S+  V
Sbjct: 484 KSPICVYVLHLVELTGRASAMLIVHNTRKSGCPALNRTQAQSDHIINAFENYEQHSS-CV 542

Query: 545 TIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAA---CLHGLNNNVLG 601
           ++QP   IS Y TMHE IC L +D  +  I++ F        G  A       +N NVL 
Sbjct: 543 SVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRAVNQNVLA 602

Query: 602 YAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITL 661
            APC+VGI VD+ LN  +  A  +   +++AV F GGPDDREA++    MS +PG+ +T+
Sbjct: 603 NAPCSVGILVDRGLNGSTRLAA-SQVSHHIAVLFFGGPDDREALSYAERMSEHPGISLTV 661

Query: 662 SRIYLEENLVE---EEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLV 718
            R    +  VE   E   K LDE  +NDF   N  + ++V      N+  + V A RS+ 
Sbjct: 662 MRFIAGDETVESTVEPSKKQLDEEYINDFRMKNSNDESIVYTEKIVNNGEETVAAVRSID 721

Query: 719 SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772
           S +DL IVGR Q   S L      W E  ELG IGDMLAS+DFA   VSVLV+Q
Sbjct: 722 SIHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDMLASSDFAS-TVSVLVVQ 774

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785381|emb|CAN66285.1| hypothetical protein VITISV_011183 [Vitis vinifera]

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 265/791 (33%), Positives = 434/791 (54%), Gaps = 47/791 (5%)

Query: 18  DRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKF 77
           D    C S    T  + +GI   +  +   LP+ +LQ++L    +++L  +L+PL+QP+ 
Sbjct: 12  DDMIVCYS---PTMITTNGIWQGDNPLDYSLPLFILQLTLVVVTTRLLVFILKPLRQPRV 68

Query: 78  VSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPR 137
           +S  L G++LGPS LG+       +   R ++  +  + +G +YF+F+  V+MD  +I R
Sbjct: 69  ISEILGGVLLGPSVLGQNLHLANLIFPLRSVMVLETMANVGLLYFLFLVGVEMDLTVIRR 128

Query: 138 TIKKTYSVSLTVFIVPLLISL---LVGHREQYKIPR---IHDQGISISFVASKCAYPVLV 191
           T KK  ++++   I+P +I     L+ H E  ++ R   +   G+++S  A    +PVL 
Sbjct: 129 TGKKAIAIAIIGMILPFIIGCAFSLILHHEDRQMNRSTFVLFLGVALSVTA----FPVLA 184

Query: 192 DAISELKLLNSELGQLAISSALLHEIVGLLRLLMA-PLSKAKYRSVA-IRIELSLCAMSL 249
             ++ELKL+N+ELG++A+SSAL++++   + L +A  L++ +  S+A + + LS     +
Sbjct: 185 RILAELKLINTELGRMAMSSALINDMCAWVLLAVAIALAENESSSLASLWVILSSVFFVV 244

Query: 250 FTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVI 309
               ++ P I W+IRR PE +   +FYI  ILTG ++     D++  +   GA + G+VI
Sbjct: 245 VCIFIVRPVISWMIRRTPEGESFSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVI 304

Query: 310 PAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKV 369
           P G  LG  L+EK E  +S   LP F+   G + D+  I+    +  L L+I+ A  GK+
Sbjct: 305 PNGQ-LGVTLIEKLEDFVSGLLLPLFFAISGLKTDVTKIHGALTWGFLFLVIILACAGKI 363

Query: 370 VASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVT 429
             +++    ++   R  ++    +N KG+ E++     R + ++D +T++++V   + +T
Sbjct: 364 AGTLIVALFYQMPLREGIVLGLLMNTKGLVEMIVLNVGRDQHVLDDETFAIMVTVAVIMT 423

Query: 430 AIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTE 489
           +I+ P+++  Y P R+       T+Q + PD ELRIL  IH   ++  II+L++AS+P++
Sbjct: 424 SIIAPIVTHIYKPARKFIPYKRRTIQRSKPDGELRILVCIHTPRNVPTIINLLEASHPSK 483

Query: 490 MNPICAYVVHLVELVGRAAPVVETYSTQKTKAMA-----NSTDHIMRAVIKYAEGSNDAV 544
            +PIC YV+HLVEL GRA+ ++  ++T+K+   A       +DHI+ A   Y + S+  V
Sbjct: 484 KSPICXYVLHLVELTGRASAMLIVHNTRKSGCPALNRTQAQSDHIINAFENYEQHSS-CV 542

Query: 545 TIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAA---CLHGLNNNVLG 601
           ++QP   IS Y TMHE IC L +D  +  I++ F        G  A       +N NVL 
Sbjct: 543 SVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRAVNQNVLA 602

Query: 602 YAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITL 661
            APC+VGI VD+ LN  +  A  +   +++AV F GGPDDREA++    MS +PG+ +T+
Sbjct: 603 NAPCSVGILVDRGLNGSTRLAA-SQVSHHIAVLFFGGPDDREALSYAERMSEHPGISLTV 661

Query: 662 SRIYLEENLVE--------------------EEDDKCLDEVVMNDFMASNFGNPNVVCRR 701
            R    +  VE                     + +K LDE  +NDF   N  + ++V   
Sbjct: 662 MRFIAGDETVESTVEPSSDPNDPRILTVITDSDREKQLDEEYINDFRMKNSNDESIVYTE 721

Query: 702 IDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADF 761
              N+  + V A RS+ S +DL IVGR Q   S L      W E  ELG IGDMLAS+DF
Sbjct: 722 KIVNNGEETVAAVRSIDSIHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDMLASSDF 781

Query: 762 AEGMVSVLVIQ 772
           A   VSVLV+Q
Sbjct: 782 AS-TVSVLVVQ 791

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477011|ref|XP_002262677.2| PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera]

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 265/791 (33%), Positives = 434/791 (54%), Gaps = 47/791 (5%)

Query: 18  DRFTTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKF 77
           D    C S    T  + +GI   +  +   LP+ +LQ++L    +++L  +L+PL+QP+ 
Sbjct: 12  DDMIVCYS---PTMITTNGIWQGDNPLDYSLPLFILQLTLVVVTTRLLVFILKPLRQPRV 68

Query: 78  VSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPR 137
           +S  L G++LGPS LG+       +   R ++  +  + +G +YF+F+  V+MD  +I R
Sbjct: 69  ISEILGGVLLGPSVLGQNLHLANLIFPLRSVMVLETMANVGLLYFLFLVGVEMDLTVIRR 128

Query: 138 TIKKTYSVSLTVFIVPLLISL---LVGHREQYKIPR---IHDQGISISFVASKCAYPVLV 191
           T KK  ++++   I+P +I     L+ H E  ++ R   +   G+++S  A    +PVL 
Sbjct: 129 TGKKAIAIAIIGMILPFIIGCAFSLILHHEDRQMNRSTFVLFLGVALSVTA----FPVLA 184

Query: 192 DAISELKLLNSELGQLAISSALLHEIVGLLRLLMA-PLSKAKYRSVA-IRIELSLCAMSL 249
             ++ELKL+N+ELG++A+SSAL++++   + L +A  L++ +  S+A + + LS     +
Sbjct: 185 RILAELKLINTELGRMAMSSALINDMCAWVLLAVAIALAENESSSLASLWVILSSVFFVV 244

Query: 250 FTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVI 309
               ++ P I W+IRR PE +   +FYI  ILTG ++     D++  +   GA + G+VI
Sbjct: 245 VCIFIVRPVISWMIRRTPEGESFSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVI 304

Query: 310 PAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKV 369
           P G  LG  L+EK E  +S   LP F+   G + D+  I+    +  L L+I+ A  GK+
Sbjct: 305 PNGQ-LGVTLIEKLEDFVSGLLLPLFFAISGLKTDVTKIHGALTWGFLFLVIILACAGKI 363

Query: 370 VASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVT 429
             +++    ++   R  ++    +N KG+ E++     R + ++D +T++++V   + +T
Sbjct: 364 AGTLIVALFYQMPLREGIVLGLLMNTKGLVEMIVLNVGRDQHVLDDETFAIMVTVAVIMT 423

Query: 430 AIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTE 489
           +I+ P+++  Y P R+       T+Q + PD ELRIL  IH   ++  II+L++AS+P++
Sbjct: 424 SIIAPIVTHIYKPARKFIPYKRRTIQRSKPDGELRILVCIHTPRNVPTIINLLEASHPSK 483

Query: 490 MNPICAYVVHLVELVGRAAPVVETYSTQKTKAMA-----NSTDHIMRAVIKYAEGSNDAV 544
            +PIC YV+HLVEL GRA+ ++  ++T+K+   A       +DHI+ A   Y + S+  V
Sbjct: 484 KSPICVYVLHLVELTGRASAMLIVHNTRKSGCPALNRTQAQSDHIINAFENYEQHSS-CV 542

Query: 545 TIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAA---CLHGLNNNVLG 601
           ++QP   IS Y TMHE IC L +D  +  I++ F        G  A       +N NVL 
Sbjct: 543 SVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRAVNQNVLA 602

Query: 602 YAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITL 661
            APC+VGI VD+ LN  +  A  +   +++AV F GGPDDREA++    MS +PG+ +T+
Sbjct: 603 NAPCSVGILVDRGLNGSTRLAA-SQVSHHIAVLFFGGPDDREALSYAERMSEHPGISLTV 661

Query: 662 SRIYLEENLVE--------------------EEDDKCLDEVVMNDFMASNFGNPNVVCRR 701
            R    +  VE                     + +K LDE  +NDF   N  + ++V   
Sbjct: 662 MRFIAGDETVESTVEPSSDPNDPRILTVITDSDREKQLDEEYINDFRMKNSNDESIVYTE 721

Query: 702 IDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADF 761
              N+  + V A RS+ S +DL IVGR Q   S L      W E  ELG IGDMLAS+DF
Sbjct: 722 KIVNNGEETVAAVRSIDSIHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDMLASSDF 781

Query: 762 AEGMVSVLVIQ 772
           A   VSVLV+Q
Sbjct: 782 AS-TVSVLVVQ 791

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096008|ref|XP_002310518.1| cation proton exchanger [Populus trichocarpa] gi|222853421|gb|EEE90968.1| cation proton exchanger [Populus trichocarpa]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 263/771 (34%), Positives = 432/771 (56%), Gaps = 36/771 (4%)

Query: 30  TKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGP 89
           T  + +GI   +  +   LP+ +LQ++L    +++L  +L+PL+QP+ +S  L G+ILGP
Sbjct: 5   TMITTNGIWQGDNPLDYSLPLFILQLTLVVVTTRLLVYILKPLRQPRVISEILGGVILGP 64

Query: 90  SFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTV 149
           S LGR K F   +   R ++  +  + +G +YF+F+  V+MD  +I RT KK  ++++  
Sbjct: 65  SVLGRSKAFANTIFPLRSVMVLETMANMGLLYFLFLVGVEMDISVIKRTGKKAIAIAIGG 124

Query: 150 FIVPLLISLLVG---HREQYKIPRIHDQGISISFVA---SKCAYPVLVDAISELKLLNSE 203
            I P  I L      H++   +    +QG  + F+    S  A+PVL   ++E+KL+N+E
Sbjct: 125 MIFPFFIGLAFSFALHKDSQSL----NQGTFVLFLGVALSVTAFPVLARVLAEIKLINTE 180

Query: 204 LGQLAISSALLHEIVGLLRLLMA-PLSKAKYRSVA-IRIELSLCAMSLFTFLVLWPTIQW 261
           +G++A+S+AL+++I   + L +A  L++ K  S+A + + LS     L    V+ P I W
Sbjct: 181 IGRIAMSAALINDICAWILLALAITLAENKSTSLATLWVILSSFTFVLICIYVIRPVISW 240

Query: 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVE 321
           +I   PE + + +FYI  ILTG ++     D++  +   GA + G++IP GP LG  L+E
Sbjct: 241 MISSTPEGETISEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLIIPNGP-LGVTLIE 299

Query: 322 KSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRT 381
           K E  +S   LP F+   G + DI +IN    +  L L+I+  + GKVV ++LA+  ++ 
Sbjct: 300 KLEDFVSGLLLPIFFAMSGLKTDIGAINGVATWLILILVIIVGFAGKVVGTVLASMLYQM 359

Query: 382 SFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYN 441
                +     +N KG+ E++     R+++++D ++++++V+  + +TAI+ P ++V Y 
Sbjct: 360 PLLEGITLGFLMNPKGLVEMIVLNVGREQKVLDDESFAMMVIVAVIMTAIIIPSVTVIYR 419

Query: 442 PQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLV 501
           P++R       T+Q +  D+E R L  +H   ++  II+L++AS+P + +P+C YVVHLV
Sbjct: 420 PEKRFLPYTRRTIQRSKRDAEFRALACVHTPRNVPTIINLLEASHPNKRSPMCVYVVHLV 479

Query: 502 ELVGRAAPVVETYSTQKTKAMA-----NSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYE 556
           EL GRA+ ++  ++T+K+   A       +DHI+ A   Y E +   V++QP   IS Y 
Sbjct: 480 ELTGRASAMLIVHNTRKSGHPALNRTQAQSDHIINAFDNY-EQNAVCVSVQPLTAISPYS 538

Query: 557 TMHESICKLVKDNCITLILLQFIPPNEETEGRAA---CLHGLNNNVLGYAPCTVGIFVDK 613
           TMH  IC L +D  + LI+L F        G  A    +  +N NVL  APC+VGI VD+
Sbjct: 539 TMHVDICNLAEDKRVALIILPFHKQQTVDGGMEATNPAIRMVNQNVLASAPCSVGILVDR 598

Query: 614 RLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL--- 670
            L+  +  A      ++VAV + GGPDDREA++    MS +P + +T+ R    E+    
Sbjct: 599 GLSGSTRLAS-NQAAHHVAVLYFGGPDDREALSYAWRMSEHPTINLTVMRFVPGEDAKAL 657

Query: 671 -------VEEED--DKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDN 721
                  VE E+  +K LDE  +N+F      N ++    I  ++  + V A RS+ + +
Sbjct: 658 DNPGMLSVETENLKEKQLDEDHVNEFRTQTAHNGSIFYNEIVVSNGEETVAAIRSMDNHH 717

Query: 722 DLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772
           DL IVGR Q   S L      W E  ELG IGD+LAS+DFA   VSVLV+Q
Sbjct: 718 DLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFA-ATVSVLVLQ 767

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461421|ref|XP_003600992.1| Cation proton exchanger [Medicago truncatula] gi|355490040|gb|AES71243.1| Cation proton exchanger [Medicago truncatula]

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 279/828 (33%), Positives = 453/828 (54%), Gaps = 74/828 (8%)

Query: 23  CVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTL 82
           CV  N+    SY GI   +      LP  + Q+ +   +SQ LY LLRPL+ PKF+ N +
Sbjct: 24  CVK-NDRNVGSY-GIFSGDNPFDFTLPATLFQIIIIVVLSQTLYFLLRPLRTPKFICNLI 81

Query: 83  SGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKT 142
            GIILGPS LGR +++   +   R        S +G IYF+F+  +KMD  M   TI+  
Sbjct: 82  GGIILGPSLLGRNEIYWKALFPPRQSDVLSVLSLLGAIYFLFLIALKMDLLM---TIRAA 138

Query: 143 YSVSLTVFIVPLL--ISLLVGHREQYKIPRIHDQGISISFVASKCA---------YPVLV 191
            S SL + I+PL+   S+L    + + +P  H+  I I   AS+ A         +P + 
Sbjct: 139 KSTSL-LGILPLMASFSVLSLLLKVFYVP--HNPHIKIE--ASRTALSATIAFSNFPAVS 193

Query: 192 DAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLF- 250
           DA+ EL L+ +ELGQ+A+S+A L++ +    ++   +       + + I +   +  LF 
Sbjct: 194 DALIELNLIATELGQIALSAATLNDCIQFFFIVSHRIVGEHTPELKLSI-MGFSSWILFM 252

Query: 251 --TFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIV 308
             +F +L P +  I R  P  KPVK  Y+V IL GALVMA   D + + + IG  + G++
Sbjct: 253 FCSFYILQPMMNLIARSTPVGKPVKQMYVVFILLGALVMAAITDMIGLTFLIGPLIWGLI 312

Query: 309 IPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGK 368
           IP+GPPLG+ LVEK E I+S F LPFF+++VG   ++ ++ +WR    ++LI  A  I K
Sbjct: 313 IPSGPPLGTTLVEKCELIISEFLLPFFFVYVGMTTNLAALEDWRECITMQLIFFAGDIAK 372

Query: 369 VVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAV 428
           VVA +L +  +    ++  +    +NIKG+  L+TF++  Q +L+D +T S L++  +  
Sbjct: 373 VVACVLVSMIYNIKPKHGTVLGLMLNIKGIPHLITFIKLHQIKLMDDETLSHLMIGVVVT 432

Query: 429 TAIVTPLISVYYNPQRRLESIA------MGTLQTALPDSELRILCGIHDEDHISGIIHLI 482
           TAI+TPLI + Y  + R+ S +      M T+Q    +SE RI+  +H E ++ G+  L+
Sbjct: 433 TAIITPLIKLLYKHRPRVLSSSSIFDEEMRTIQNTPRNSEFRIVTCLHSEGNVRGMTALV 492

Query: 483 KASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMAN----STDHIMRAVIKYAE 538
           +  NP + +P+C +V+HL+EL+G++A ++   + ++ +   +    +T+HIMRA   YA+
Sbjct: 493 EICNPIQESPLCVFVIHLIELLGKSASILLPINYKQNRKFLSVNYPNTNHIMRAFENYAK 552

Query: 539 GSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHG---- 594
            S   VT+ P+I ++ Y +M +++C L +DN +  I++ F       E     LHG    
Sbjct: 553 NSCGPVTVVPYINVAPYMSMLDAVCNLAQDNMVPFIVIPF------HENDHIDLHGHVST 606

Query: 595 ----LNNNVLGYAPCTVGIFVDK--RLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALV 648
               LN+      PCT+GI VD+  RL   ++  KP    ++V + FIGGPDDREA+AL 
Sbjct: 607 SIRKLNSRFQARVPCTLGILVDRYSRL-GVNDQTKPY---FHVGILFIGGPDDREALALG 662

Query: 649 SHMSSNPGVRITLSRIYL------------EENLVEEEDDKCLDEVVMNDFMASNFGNPN 696
             MS    ++++L R  +              + ++EE ++ LDE ++++F +  FG  N
Sbjct: 663 IRMSERLNMKVSLFRFIVTNRKYVTRIDSSRTDPLDEEQEEMLDEGLIDEFKSMKFGIGN 722

Query: 697 VVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDE-LGIIGDM 755
           +    I  +D+ +++ A R L +D DLV+VG++    +   EE   ++E  + LG+ GDM
Sbjct: 723 IFWYEIVVDDAVEIMEAIRGLEADYDLVMVGKRHNVGNLKDEEMGNFIENVQILGLFGDM 782

Query: 756 LASADFAEGMVSVLVIQSVRILKKDPKTVKALSNSSSNKAPKTVKALS 803
           L+S +F  GMV VLV Q  R    D + +  L    S     TV  +S
Sbjct: 783 LSSTEFCIGMVPVLVTQCGR----DKRVINKLDRVGSGSV--TVSQMS 824

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550512|ref|XP_002516306.1| Na(+)/H(+) antiporter, putative [Ricinus communis] gi|223544536|gb|EEF46053.1| Na(+)/H(+) antiporter, putative [Ricinus communis]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 268/802 (33%), Positives = 437/802 (54%), Gaps = 47/802 (5%)

Query: 22  TCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNT 81
           T V Y   T  + +G+   +  +   LP+ +LQ++L    +++L  +L+P +QP+ +S  
Sbjct: 16  TIVCY-APTMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEI 74

Query: 82  LSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKK 141
           + G+ILGPS LGR K+F   +   R ++  +  + +G +YF+F+  V+MD  +I RT KK
Sbjct: 75  MGGVILGPSMLGRSKVFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISVIKRTGKK 134

Query: 142 TYSVSLTVFIVPLLISLLVG---HREQYKIPRIHDQGISISFVA---SKCAYPVLVDAIS 195
             ++++   I+P    L      HR+ + +    ++G  I F+    S  A+PVL   ++
Sbjct: 135 ALAIAVAGMILPFFTGLAFSFLIHRDSHNM----NEGTFILFLGVALSVTAFPVLARVLA 190

Query: 196 ELKLLNSELGQLAISSALLHEIVGLLRLLMA-PLSKAKYRSVA-IRIELSLCAMSLFTFL 253
           ELKL+N+ELG++A+SSAL+++I   + L  A  L++    S+A + + LS  A  +F   
Sbjct: 191 ELKLINTELGRIAMSSALINDICAWILLCFAIALAENDSASLASLWVILSSVAFVIFCVF 250

Query: 254 VLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP 313
           V+ P I WIIRR PE +   +FYI  ILTG ++     D++  +   GA + G+VIP GP
Sbjct: 251 VVRPAISWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGP 310

Query: 314 PLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASI 373
            LG  L+EK E  +S   LP F+   G + ++ +I     +  L L+I+   +GK+  ++
Sbjct: 311 -LGVTLIEKLEDFVSGLLLPLFFAMSGLKTNVGAIQGATTWGLLGLVILLGGVGKIAGTL 369

Query: 374 LATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVT 433
           L T  ++   R  L     +N KG+ E++     + + ++D ++++++V+  + +T ++T
Sbjct: 370 LVTFFYQMPVREGLTLGLLMNTKGLIEMIILNVGKDQRVLDDESFAIMVIVAVIMTGLIT 429

Query: 434 PLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPI 493
           P+++  Y P R+       T+  + PD+ELRIL  +H   ++  II+L++AS+PT+ +P+
Sbjct: 430 PIVTAIYRPARKFIPYKRRTIHRSKPDAELRILVCVHTPRNVPTIINLLEASHPTKRSPM 489

Query: 494 CAYVVHLVELVGRAAPVVETYSTQKTKAMA-----NSTDHIMRAVIKYAEGSNDAVTIQP 548
           C +V+HLVEL GRA+ ++  ++T+K+   A       +DHI+ A   Y E     V++QP
Sbjct: 490 CVFVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENY-EQHAVCVSVQP 548

Query: 549 FIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAA---CLHGLNNNVLGYAPC 605
              IS Y TMHE IC L +D  +  I++ F        G  A       +N NVL  APC
Sbjct: 549 LTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRTVNQNVLANAPC 608

Query: 606 TVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIY 665
           +VGI VD+ LN  +  A      +++AV F GGPDDREA++    MS +PG+ +T+ R  
Sbjct: 609 SVGILVDRGLNGSTRLAA-NQLSHHIAVLFFGGPDDREALSYAWRMSEHPGISLTVMRFL 667

Query: 666 LEEN-------------------LVEEED--DKCLDEVVMNDFMASNFGNPNVVCRRIDA 704
             E+                    VE  D  +K LDE  +N+F      + +V    I  
Sbjct: 668 PGEDAAQSARQPGGSHHNEPRILTVETHDQREKQLDEEYINEFRIHIANDESVFYTEILV 727

Query: 705 NDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAE 763
           N+  + V A R + ++ +DL IVGR Q   S L      W E  ELG IGD+LAS+DFA 
Sbjct: 728 NNGEETVAAIRGMDINAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFA- 786

Query: 764 GMVSVLVIQSVRILKKDPKTVK 785
             VSVLV+Q        P+T+ 
Sbjct: 787 ATVSVLVVQQYVGTGLQPETLH 808

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	836
TAIR|locus:2054152	821	CHX15 "cation/hydrogen exchang	0.807	0.822	0.315	1.2e-108
TAIR|locus:2166168	859	CHX24 "cation/H+ exchanger 24"	0.649	0.632	0.272	1e-92
TAIR|locus:2172631	822	CHX3 "cation/H+ exchanger 3" [	0.699	0.711	0.310	2.7e-88
TAIR|locus:2090462	800	CHX19 "cation/H+ exchanger 19"	0.874	0.913	0.285	3.4e-84
TAIR|locus:2060827	831	ATCHX13 [Arabidopsis thaliana	0.875	0.880	0.293	3.9e-83
TAIR|locus:2160457	810	CHX18 "cation/H+ exchanger 18"	0.812	0.838	0.277	1.7e-82
TAIR|locus:2082102	783	CHX10 "cation/H+ exchanger 10"	0.879	0.938	0.290	1.4e-78
TAIR|locus:2007392	829	CHX14 "cation/hydrogen exchang	0.864	0.872	0.281	3.4e-77
TAIR|locus:2082142	817	CHX4 "cation/H+ exchanger 4" [	0.742	0.760	0.315	2.7e-75
TAIR|locus:2128484	820	CHX17 "cation/H+ exchanger 17"	0.759	0.774	0.266	3.8e-75

TAIR|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 938 (335.3 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
 Identities = 223/707 (31%), Positives = 386/707 (54%)

Query:    35 HGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGR 94
             +G+   +  +   LP+ +LQ++L   +++    +L+P +QP+ +S  L GI+LGPS LGR
Sbjct:    24 NGVWQGDNPLDFSLPLFVLQLTLVVVVTRFFVFILKPFRQPRVISEILGGIVLGPSVLGR 83

Query:    95 IKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPL 154
                F   +   R ++  +  + +G +YF+F+  V+MD  M+   ++KT   +LT+ I  +
Sbjct:    84 STKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMDI-MV---VRKTGKRALTIAIGGM 139

Query:   155 LISLLVGHREQYKIPRIHD---QGISISFVA---SKCAYPVLVDAISELKLLNSELGQLA 208
             ++  L+G    + + R  D   QG  I F+    S  A+PVL   ++ELKL+N+E+G+++
Sbjct:   140 VLPFLIGAAFSFSMHRSEDHLGQGTYILFLGVALSVTAFPVLARILAELKLINTEIGRIS 199

Query:   209 ISSALLHEIVG--LLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRI 266
             +S+AL++++    LL L +A     K    ++ + +S          V+ P I WIIR+ 
Sbjct:   200 MSAALVNDMFAWILLALAIALAESDKTSFASLWVMISSAVFIAVCVFVVRPGIAWIIRKT 259

Query:   267 PERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAI 326
             PE +   +F+I  ILTG ++     D++  +   GA + G+VIP GP LG  L+EK E  
Sbjct:   260 PEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGP-LGLTLIEKLEDF 318

Query:   327 LSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNA 386
             +S   LP F+   G + +I +I     +  L L+I  A  GKV+ +++         R  
Sbjct:   319 VSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLACAGKVIGTVIVAFFHGMPVREG 378

Query:   387 LLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRL 446
             +     +N KG+ E++     + ++++D +T++ +VL  L +T ++TP++++ Y P ++ 
Sbjct:   379 ITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLVALVMTGVITPIVTILYKPVKKS 438

Query:   447 ESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGR 506
              S    T+Q   PDSELR+L  +H   ++  II+L++AS+PT+ +PIC YV+HLVEL GR
Sbjct:   439 VSYKRRTIQQTKPDSELRVLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGR 498

Query:   507 AAPVVETYSTQKTKAMA-NST----DHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHES 561
             A+ ++  ++T+K+   A N T    DHI+ A   Y + +   V +QP   IS Y TMHE 
Sbjct:   499 ASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAA-FVAVQPLTAISPYSTMHED 557

Query:   562 ICKLVKDNCITLILLQFIPPNEETEGRAA---CLHGLNNNVLGYAPCTVGIFVDKRLNNC 618
             +C L +D  ++ I++ F        G  +       +N N+L  +PC+VGI VD+ LN  
Sbjct:   558 VCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPAYRLVNQNLLENSPCSVGILVDRGLNGA 617

Query:   619 SNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKC 678
             +           VAV F GGPDDREA+A    M+ +PG+ +T+ R ++ +   E+E D  
Sbjct:   618 TR-LNSNTVSLQVAVLFFGGPDDREALAYAWRMAQHPGITLTVLR-FIHD---EDEADTA 672

Query:   679 LDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVI 725
                   ND   S+   P +  R+    D +  +N FR+  ++ + ++
Sbjct:   673 STRAT-ND---SDLKIPKMDHRKQRQLDDDY-INLFRAENAEYESIV 714

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006885 "regulation of pH" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2166168 CHX24 "cation/H+ exchanger 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
 Identities = 154/566 (27%), Positives = 277/566 (48%)

Query:    36 GINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRI 95
             G+   E A++      +++  +     +++ I LRP +QP+ VS  + G+++GPS  G I
Sbjct:    53 GMFKGENAMNYAFSTFLIEAIIIIFFIKVVSIALRPFRQPRIVSEIIGGMMIGPSMFGGI 112

Query:    96 KMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLL 155
             + F+ Y+              +G  YF+F+   K D G I +  +K   ++    IVP++
Sbjct:   113 RNFNYYLFPPIANYICANIGLMGFFYFLFLTAAKTDVGAIGKAPRKHKYIAAIGVIVPII 172

Query:   156 ISLLVGH--REQYKIPRIHDQGIS-ISFVASKCAYPVLVDAISELKLLNSELGQLAISSA 212
                 VG   R+Q          I  + F  S  ++PV+   + ++ LLNSE+G+ A+S A
Sbjct:   173 CVGSVGMAMRDQMDENLQKPSSIGGVVFALSFTSFPVIYTVLRDMNLLNSEVGKFAMSVA 232

Query:   213 LLHEIVGL-LRLLMAPLSKAKYRSV--AIRIELSLCAMSLFTFLVLWPTIQWIIRRIPER 269
             LL ++ G+ + ++   ++ A            +S+   + F  LV+     WI+ + PE 
Sbjct:   233 LLGDMAGVYVIVIFEAMTHADVGGAYSVFWFLVSVVIFAAFMLLVVRRAFDWIVSQTPEG 292

Query:   270 KPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSN 329
               V   YIV IL G L      D   ++  +G   LG+++P GPPLGS L  +SE  +  
Sbjct:   293 TLVNQNYIVMILMGVLASCFLTDMFGLSIAVGPIWLGLLVPHGPPLGSTLAVRSETFIYE 352

Query:   330 FFLPFFYIHVGQQIDIYSINN--WR-AFAALELIIMAAYIGKVVASILATTCFRTSFRNA 386
             F +PF Y  VGQ  +I+ + +  WR   + L  + +  +I K +++  A   F+   R +
Sbjct:   353 FLMPFTYALVGQGTNIHFLRDETWRNQLSPLFYMTVVGFITKFLSTAFAALFFKVPARES 412

Query:   387 LLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRL 446
             +     +N++G  +L+ +L W  + ++    Y+V+VL  + VTA+ TPLI+ +Y+P R  
Sbjct:   413 ITLGLMMNLRGQMDLLVYLHWIDKRIVGFPGYTVMVLHTVVVTAVTTPLINFFYDPTRPY 472

Query:   447 ESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGR 506
              S    T+Q    ++E+ ++  + D + +SG+I  +  + PT+ +P+  + V LVEL GR
Sbjct:   473 RSSKHRTIQHTPQNTEMGLVLAVSDHETLSGLITFLDFAYPTKSSPLSIFAVQLVELAGR 532

Query:   507 AAPVV-----------ETYSTQKT---KAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMI 552
             A P+            E Y  ++    +  +   D +  A   Y E  N+ VT++ +   
Sbjct:   533 ATPLFIDHEQRKEEEEEEYEEEEEEPERKQSGRIDQVQSAFKLYEEKRNECVTLRSYTAH 592

Query:   553 SQYETMHESICKLVKDNCITLILLQF 578
             +    M++ IC+L        ILL +
Sbjct:   593 APKRLMYQDICELALGKKTAFILLPY 618

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2172631 CHX3 "cation/H+ exchanger 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
 Identities = 195/628 (31%), Positives = 335/628 (53%)

Query:   186 AYPVLVDAISELKLLNSELGQLAISSALLHE----IVGLLRLLMAPLSKAKYR--SVAI- 238
             ++PV+ + + EL+L NSELG+LAISSA++ +    I+  + + M  L   + R  SV I 
Sbjct:   201 SFPVVGNLLFELRLQNSELGRLAISSAVISDFSTSILASVLIFMKELKDEQTRLGSVFIG 260

Query:   239 ------RIELSLCAMSLFTFLVLW---PTIQWIIRRIPERKPVKDFY---IVAILTGALV 286
                   R  +    + LF  + ++   P + +II++ P  +PVK  Y   I+ +++G+ +
Sbjct:   261 DVIAGNRPLMRAGIVVLFVCIAIYVFRPLMFYIIKQTPSGRPVKAIYLSTIIVMVSGSAI 320

Query:   287 MAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIY 346
             +A  C   + +  +G  +LG+ +P GPPLGSA+++K E+ +   FLPFF      +IDI 
Sbjct:   321 LANWC---KQSIFMGPFILGLAVPHGPPLGSAIIQKYESAIFGTFLPFFIASSSTEIDIS 377

Query:   347 SINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLR 406
             ++  W     + LI++ +++ K + + +    +     +    S  ++ KG+ EL  +  
Sbjct:   378 ALFGWEGLNGIILIMVTSFVVKFIFTTVPALFYGMPMEDCFALSLIMSFKGIFELGAYAL 437

Query:   407 WRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRIL 466
               QR  +  +T++V  L     +AI+ P++   Y+P R         +Q   P+SELRIL
Sbjct:   438 AYQRGSVRPETFTVACLYITLNSAIIPPILRYLYDPSRMYAGYEKRNMQHLKPNSELRIL 497

Query:   467 CGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANS- 525
               I+  D IS +I+L++A  P+  +P+  YV+HL+ELVG+A P+  ++  Q  +    S 
Sbjct:   498 SCIYRTDDISPMINLLEAICPSRESPVATYVLHLMELVGQANPIFISHKLQTRRTEETSY 557

Query:   526 TDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEET 585
             +++++ +  K+ +    +V +  +  +S  +TMH  IC L  +N  +LILL F       
Sbjct:   558 SNNVLVSFEKFRKDFYGSVFVSTYTALSMPDTMHGDICMLALNNTTSLILLPF-HQTWSA 616

Query:   586 EGRAAC-----LHGLNNNVLGYAPCTVGIFVDKRLN---NCSNSAKPAN------FCYNV 631
             +G A       +  LN +VL  APC+VG+FV +  +   N S+  K  N        YN+
Sbjct:   617 DGSALISNNNMIRNLNKSVLDVAPCSVGVFVYRSSSGRKNISSGRKTINGTVPNLSSYNI 676

Query:   632 AVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEED--DKCLDEVVMNDFMA 689
              + F+GG DDREA+ L + M+ +P + IT+ R+   +    E    DK LD+ ++ D  +
Sbjct:   677 CMIFLGGKDDREAVTLATRMARDPRINITIVRLITTDEKARENTVWDKMLDDELLRDVKS 736

Query:   690 SNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDEL 749
             +   +     + I+  D+ +  +  RS+VSD D+ IVGR    +S   E  + W E+ EL
Sbjct:   737 NTLVDIFYSEKAIE--DAAETSSLLRSMVSDFDMFIVGRGNGRTSVFTEGLEEWSEFKEL 794

Query:   750 GIIGDMLASADFAEGMVSVLVIQSVRIL 777
             GIIGD+L S DF     SVLVIQ  +++
Sbjct:   795 GIIGDLLTSQDF-NCQASVLVIQQQQLM 821

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 219/767 (28%), Positives = 390/767 (50%)

Query:    31 KFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPS 90
             K + +G   +E  +   LP+++LQ+ L    +++L   L+PLKQP+ ++  + GI+LGPS
Sbjct:    15 KATSNGAFQNESPLDFALPLIILQIVLVVVFTRLLAYFLKPLKQPRVIAEIIGGILLGPS 74

Query:    91 FLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVF 150
              LGR K +   +   + +      + IG ++F+F+  +++D   I +T KK+  +++   
Sbjct:    75 ALGRSKAYLDTIFPKKSLTVLDTLANIGLLFFLFLVGLELDFAAIKKTGKKSLLIAIAGI 134

Query:   151 IVPLLISLLVGHREQYKIPRIHDQGISISFVA---SKCAYPVLVDAISELKLLNSELGQL 207
              +P ++ +         I +  DQ   I F+    S  A+PVL   ++ELKLL +++G++
Sbjct:   135 SLPFIVGVGTSFVLSATISKGVDQLPFIVFMGVALSITAFPVLARILAELKLLTTDIGRM 194

Query:   208 AISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMS--LFTFLVLWPTIQWIIRR 265
             A+S+A ++++   + L +A        S  + + + LC     +F  + + P + ++ RR
Sbjct:   195 AMSAAGVNDVAAWILLALAIALSGDGTSPLVSVWVLLCGTGFVIFAVVAIKPLLAYMARR 254

Query:   266 IPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEA 325
              PE +PVK+ Y+   LT  L  +   D++ ++   GA ++GIV P   P    L EK E 
Sbjct:   255 CPEGEPVKELYVCVTLTVVLAASFVTDTIGIHALFGAFVVGIVAPKEGPFCRILTEKIED 314

Query:   326 ILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRN 385
             ++S   LP ++   G + D+ +I   +++  L L+I+    GK+V ++ ++   +  FR 
Sbjct:   315 LVSGLLLPLYFAASGLKTDVTTIRGAQSWGLLVLVILTTCFGKIVGTVGSSMLCKVPFRE 374

Query:   386 ALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRR 445
             A+     +N KG+ EL+     + R++++ Q +++LVL  L  T I TP++ + Y P R+
Sbjct:   375 AVTLGFLMNTKGLVELIVLNIGKDRKVLNDQAFAILVLMALFTTFITTPIVMLIYKPARK 434

Query:   446 LESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPT-EMNPICAYVVHLVELV 504
                    T+Q    DSELRIL   H   +I  +I+LI++S  T +   +C Y +HL+EL 
Sbjct:   435 GAPYKHRTIQRKDHDSELRILACFHSTRNIPTLINLIESSRGTGKKGRLCVYAMHLMELS 494

Query:   505 GRAAPVVETYSTQKT-----KAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMH 559
              R++ +   +  +         +  STD ++ A   Y      AV ++P   IS   ++H
Sbjct:   495 ERSSAIAMVHKARNNGLPIWNKIERSTDQMVIAFEAYQHLR--AVAVRPMTAISGLSSIH 552

Query:   560 ESICKLVKDNCITLILLQFIPPNEETEGRAACL----HGLNNNVLGYAPCTVGIFVDKRL 615
             E IC       + +ILL F   ++  +G    +    H +N  VL  APC+VGI VD+ L
Sbjct:   553 EDICTSAHQKRVAMILLPF-HKHQRMDGAMESIGHRFHEVNQRVLQRAPCSVGILVDRGL 611

Query:   616 NNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRIT----------LSRIY 665
                S     +   Y V + F GG DDREA+A    M  +PG+ +T          L R  
Sbjct:   612 GGTSQVVA-SEVAYKVVIPFFGGLDDREALAYGMKMVEHPGITLTVYKFVAARGTLKRFE 670

Query:   666 LEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVI 725
               E+  +E+ +K  DE  + + M    GN ++          + ++   +S+   N L +
Sbjct:   671 KSEHDEKEKKEKETDEEFVRELMNDPRGNESLAYEERVVESKDDIIATLKSMSKCN-LFV 729

Query:   726 VGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772
             VGR    +S L++ T    +  ELG +G +L+S++F+    SVLV+Q
Sbjct:   730 VGRNAAVAS-LVKST----DCPELGPVGRLLSSSEFST-TASVLVVQ 770

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 226/771 (29%), Positives = 402/771 (52%)

Query:    23 CVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTL 82
             C + N  T     GI +    +   LP+++LQ+S+    S++++ +L+PLKQ    +  L
Sbjct:    30 CQAQNMLTS---RGIFMKSNPLKYALPLLLLQMSVIIVTSRLIFRVLQPLKQGMISAQVL 86

Query:    83 SGIILGPSFLGRIKMF-DAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKK 141
             +G++LGPSFLG   ++ + ++  G G +  Q  S +G +  +F+  +K+D  +I +   K
Sbjct:    87 TGVVLGPSFLGHNVIYMNMFLPAG-GKIIIQTLSNVGFVIHLFLLGLKIDGSIIRKAGSK 145

Query:   142 TYSVSLTVFIVPLLISLL--VGHREQYKIPR--IHDQGISISFVASKCAYPVLVDAISEL 197
                +    +  P  +  L  +   +   +P   I     +IS ++S  ++PV    ++EL
Sbjct:   146 AILIGTASYAFPFSLGNLTIMFISKTMGLPSDVISCTSSAIS-LSSMTSFPVTTTVLAEL 204

Query:   198 KLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLC-AMSLFTFLVLW 256
              +LNSELG+LA   +++ E+      L   L   + R++     LS+   + L  + V  
Sbjct:   205 NILNSELGRLATHCSMVCEVCSWFVALAFNLY-TRDRTMTSLYALSMIIGLLLVIYFVFR 263

Query:   257 PTIQWIIRRIP---ERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP 313
             P I W+ +R     ++K V  F+ V +L    + +++ ++M V+   GA  LG+ +P GP
Sbjct:   264 PIIVWLTQRKTKSMDKKDVVPFFPVLLLLS--IASLSGEAMGVHAAFGAFWLGVSLPDGP 321

Query:   314 PLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSI--NNWRAFAALELIIMAAYIGKVVA 371
             PLG+ L  K E   SN FLP F    G Q + + I  ++      +E+I++  Y  K + 
Sbjct:   322 PLGTELAAKLEMFASNLFLPCFIAISGLQTNFFEITESHEHHVVMIEIILLITYGCKFLG 381

Query:   372 SILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAI 431
             +  A+   +T   +AL  +  +  +G+ E+ T + W+  +++D + ++++++T L VT I
Sbjct:   382 TAAASAYCQTQIGDALCLAFLMCCQGIIEVYTTIVWKDAQVVDTECFNLVIITILFVTGI 441

Query:   432 VTPLISVYYNPQRRLESIAMGT-LQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEM 490
                L+   Y+P +R +S +  T L T   + +LR+L G+++ +++  +++L++A+ PT  
Sbjct:   442 SRFLVVYLYDPSKRYKSKSKRTILNTRQHNLQLRLLLGLYNVENVPSMVNLLEATYPTRF 501

Query:   491 NPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTD--HIMRAVIKYAEGSNDAVTIQP 548
             NPI  + +HLVEL GRA  ++  +  Q  K   N+    HI+ A  ++ +    A+  Q 
Sbjct:   502 NPISFFTLHLVELKGRAHALLTPHH-QMNKLDPNTAQSTHIVNAFQRFEQKYQGALMAQH 560

Query:   549 FIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHG----LNNNVLGYAP 604
             F   + Y +++  IC L  D   TLI++ F       +G    ++G    +N NVL  AP
Sbjct:   561 FTAAAPYSSINNDICTLALDKKATLIVIPF-HKQYAIDGTVGQVNGPIRTINLNVLDAAP 619

Query:   605 CTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRI 664
             C+V IF+D+       S    N   NVA+ FIGG DD EA+AL   M+  P + +T+   
Sbjct:   620 CSVAIFIDRGETEGRRSVLMTNTWQNVAMLFIGGKDDAEALALCMRMAEKPDLNVTMIH- 678

Query:   665 YLEENLVEEEDDKCLDEV-VMNDFM--ASNFGNPNVVCRRI-DANDSNQLVNAFRSLVSD 720
             +  ++ +++ED   + E  +++DF   A+N G  + V   + D  ++ Q+++   SL   
Sbjct:   679 FRHKSALQDEDYSDMSEYNLISDFKSYAANKGKIHYVEEIVRDGVETTQVIS---SLGDA 735

Query:   721 NDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVI 771
              D+V+VGR     S +L     W E  ELG+IGDML S DF     SVLV+
Sbjct:   736 YDMVLVGRDHDLESSVLYGLTDWSECPELGVIGDMLTSPDFH---FSVLVV 783

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IGI

GO:0015079 "potassium ion transmembrane transporter activity" evidence=IGI;IMP;IDA

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
 Identities = 201/724 (27%), Positives = 372/724 (51%)

Query:    31 KFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPS 90
             K + +G+   +  +   LP+ +LQ+ +   ++++L  LLRPL+QP+ ++  + GI+LGPS
Sbjct:    14 KATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRVIAEVIGGIMLGPS 73

Query:    91 FLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVF 150
              LGR K F   V   + +   +  + +G ++F+F+  +++D   + RT KK   ++L   
Sbjct:    74 LLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRRTGKKALGIALAGI 133

Query:   151 IVPLLISLLVGHREQYKIPRIHDQGI-SISFVA------SKCAYPVLVDAISELKLLNSE 203
              +P  +   +G    + +     +G+ S +F+       S  A+PVL   ++ELKLL +E
Sbjct:   134 TLPFALG--IG--SSFVLKATISKGVNSTAFLVFMGVALSITAFPVLARILAELKLLTTE 189

Query:   204 LGQLAISSALLHEIVGLLRLLMAPLSKAKYRS--VAIRIELSLCAMSLFTFLVLWPTIQW 261
             +G+LA+S+A ++++   + L +A        S  V++ + LS CA  +    ++ P  +W
Sbjct:   190 IGRLAMSAAAVNDVAAWILLALAIALSGSNTSPLVSLWVFLSGCAFVIGASFIIPPIFRW 249

Query:   262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVE 321
             I RR  E +P+++ YI A L   LV     D++ ++   GA ++G++IP   P   ALVE
Sbjct:   250 ISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKEGPFAGALVE 309

Query:   322 KSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRT 381
             K E ++S  FLP +++  G + ++ +I   +++  L L+   A  GK++ ++  +  F+ 
Sbjct:   310 KVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGTLGVSLAFKI 369

Query:   382 SFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYN 441
               R A+     +N KG+ EL+     + R++++ QT++++VL  L  T I TP++   Y 
Sbjct:   370 PMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPVVMAVYK 429

Query:   442 PQRRLES---IAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNP-ICAYV 497
             P RR +         ++    +++LRIL   H    I  +I+L++AS   E    +C Y 
Sbjct:   430 PARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIEKGEGLCVYA 489

Query:   498 VHLVELVGRAAPVVETYSTQKT-------KAMANSTDHIMRAVIKYAEGSNDAVTIQPFI 550
             +HL EL  R++ ++  +  +K        + +    D ++ A   + + S   V ++P  
Sbjct:   490 LHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSR--VNVRPMT 547

Query:   551 MISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHG----LNNNVLGYAPCT 606
              IS    +HE IC         +++L F   +++ +G      G    +N  VL  APC+
Sbjct:   548 AISSMSDIHEDICTTAVRKKAAIVILPF-HKHQQLDGSLETTRGDYRWVNRRVLLQAPCS 606

Query:   607 VGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYL 666
             VGIFVD+ L   S+     +  Y+V V F GGPDDREA+A    M+ +PG+ +T+ R  +
Sbjct:   607 VGIFVDRGLGG-SSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTVFRFVV 665

Query:   667 EENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVS-DNDLVI 725
                 V E         ++N    SN  N N   + + +++  ++++  R + S D  +  
Sbjct:   666 SPERVGE---------IVN-VEVSNNNNENQSVKNLKSDE--EIMSEIRKISSVDESVKF 713

Query:   726 VGRQ 729
             V +Q
Sbjct:   714 VEKQ 717

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR|locus:2082102 CHX10 "cation/H+ exchanger 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 225/775 (29%), Positives = 383/775 (49%)

Query:    26 YNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGI 85
             +N S++  +  +   +      LP++ +Q+ L F    + ++ LR +   +  S  ++GI
Sbjct:    15 FNISSQGFWDNLKSPDVVFGYSLPLLEIQIILIFFCIVMSHMFLRCIGISQIASYMIAGI 74

Query:    86 ILGPSFLGRIKMFDAYVTGGR---GMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKT 142
             +LGP     ++     ++      G+   +  S  G + F F+ TV+  + +   + K  
Sbjct:    75 VLGPQLFDVLEKSSGKLSVDPALDGIAALRCISVFGTLMFTFLMTVRTSRRVAFHSGKLP 134

Query:   143 YSVSLTVFIVPLL----ISLLVGHREQYKIPRIHDQG--ISISFVASKCAYPVLVDAISE 196
               + +  F  PL      +    + + + +P     G   +I    S    P     + E
Sbjct:   135 VVIGIVSFFAPLFGLGFQNFFSDNIDPHYMPLTKALGERTAIVITQSSILLPSTTYILLE 194

Query:   197 LKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKY----RSVAIRIELSLCAMSLFTF 252
             LK++NSELG+LA+S+ ++++I+G+  +++A + +A Y     + A R  +++    L  F
Sbjct:   195 LKIINSELGRLALSACVINDILGIFSMIVASI-QATYIHVSHATAYRDTVAVIIFFLVVF 253

Query:   253 LVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAG 312
             LV  P +QW+I R PE KPV+D YI A++  AL  A       + Y +G  M+GI+IP G
Sbjct:   254 LVFKPMVQWVIDRTPEDKPVEDMYIHAVIITALASAAYFVFFNMKYILGPLMIGIIIPEG 313

Query:   313 PPLGSALVEKSEAILSNFFLPFFYIHVGQQID---IYSINNWRAFAALELIIMAAYIGKV 369
             PPLGSAL  K E +  N FLP        + D   I S  N   F  + L  +   I K+
Sbjct:   314 PPLGSALEAKFERLTMNVFLPISITFSAMRCDGARILSQFN-DIFFNIFLTFLILVI-KL 371

Query:   370 VASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVT 429
             VA +     ++     +L  S  ++ K  ++ V +        I   TYS L+L +L   
Sbjct:   372 VACLAPCLYYKLPLSESLAVSFILSYKSFADFVLYEAVLDDTYISQATYSFLILYSLLNA 431

Query:   430 AIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKA-SNPT 488
              IV  ++   Y+P+R+  +     +     +S+LRIL  +H  +++S  I  ++  S+P 
Sbjct:   432 GIVPTVLRRMYDPRRKYVNYQKRDILHLERNSDLRILTCLHKPENVSETIAFLQLLSSPN 491

Query:   489 EMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAE---GSNDAVT 545
                PI   V+HLV+LVG+  P++ ++  +K K + N   +I  A + + +    S ++VT
Sbjct:   492 LDFPIAVTVLHLVKLVGQINPIIVSHD-KKLKRL-NKDSYIHTANLAFRQFVLESLESVT 549

Query:   546 IQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEET------EGRAACLHGLNNNV 599
             +  F   S    MHE IC L  D   ++I+   +P   +       E     +  LN ++
Sbjct:   550 VTTFTAFSHENLMHEDICTLALDKTTSMIV---VPSGRKWTVDGLFESDNTAIRHLNQSL 606

Query:   600 LGYAPCTVGIFVDK-RLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVR 658
             L  APC++GI VD+ + +  S       +  +V V FIGG DDREA++LV  M +NP +R
Sbjct:   607 LDRAPCSIGILVDRGQFSRKSIVTSKKRYIIDVGVLFIGGKDDREALSLVKRMKNNPRIR 666

Query:   659 ITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNV-VCRRIDANDSNQLVNAFRSL 717
             +T+ R+  +   +E + D  LD   + D + S   N ++    RI    S ++V A + L
Sbjct:   667 VTVIRLVFDHE-IESDWDYILDNEGLKD-LKSTEDNKDIDYIERI-VTSSVEVVKAVQLL 723

Query:   718 VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772
               + DL++VGR    +S+ L     WVE  ELG+IGD+LA+ D +   VSVLV+Q
Sbjct:   724 AEEYDLMVVGRDHDMTSQDLSGLMEWVELPELGVIGDLLAARDLSS-KVSVLVVQ 777

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

TAIR|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 213/758 (28%), Positives = 369/758 (48%)

Query:    36 GINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRI 95
             G+ L  + +   +P+++LQ+S+    S++LY LL+PLKQ    +  L+GIILGPS  G+ 
Sbjct:    38 GVFLGSDPLKYAMPLMLLQMSVIIITSRLLYRLLKPLKQGMISAQVLAGIILGPSLFGQS 97

Query:    96 KMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLL 155
               +        G +  Q  S +G    +F+  +++D  +I +   K   +    + +P  
Sbjct:    98 SAYMQMFLPISGKITLQTLSNLGFFIHLFLLGLRIDASIIRKAGSKAILIGTASYALPFS 157

Query:   156 ISLL--VGHREQYKIPR--IHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISS 211
             +  L  +  +  Y +P   +H     IS  A   ++PV    ++EL +LNS+LG+LA + 
Sbjct:   158 LGNLTVLFLKNTYNLPPDVVHCISTVISLNAMT-SFPVTTTVLAELNILNSDLGRLATNC 216

Query:   212 ALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRR----IP 267
             +++ E    +  L+  +        ++   + + A+ L  F V  P I W+  R    I 
Sbjct:   217 SIVCEAFSWIVALVFRMFLRDGTLASVWSFVWVTALILVIFFVCRPAIIWLTERRSISID 276

Query:   268 ERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAIL 327
             +   +  F I+ +L   L +++  + + V+   GA  LG+ +P GPPLG+ L  K E   
Sbjct:   277 KAGEIPFFPIIMVL---LTISLTSEVLGVHAAFGAFWLGVSLPDGPPLGTGLTTKLEMFA 333

Query:   328 SNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAY----IGKVVASILATTCFRTSF 383
             ++  LP F    G Q + + I        +E +I+  Y    +G   AS         +F
Sbjct:   334 TSLMLPCFISISGLQTNFFIIGESHV-KIIEAVILITYGCKFLGTAAASAYCNIQIGDAF 392

Query:   384 RNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQ 443
               ALL  C    +GV E+ T + W+  ++++ + +++L++T L VT I   L+   Y+P 
Sbjct:   393 SLALLMCC----QGVIEIYTCVMWKDEKVLNTECFNLLIITLLLVTGISRFLVVCLYDPS 448

Query:   444 RRLESIAMGT-LQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVE 502
             +R  S +  T L T   + + R+L  +++ +++  +++L++AS P+  +PI  + +HLVE
Sbjct:   449 KRYRSKSKRTILDTRQRNLQFRLLLCVYNVENVPSMVNLLEASYPSRFSPISVFTLHLVE 508

Query:   503 LVGRA-APVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHES 561
             L GRA A +V  +   K       + HI+    ++ + +   +  Q F   + + ++++ 
Sbjct:   509 LKGRAHAVLVPHHQMNKLDPNTVQSTHIVNGFQRFEQQNQGTLMAQHFTAAAPFSSINDD 568

Query:   562 ICKLVKDNCITLILLQFIPPNEETEGRA----ACLHGLNNNVLGYAPCTVGIFVDKRLNN 617
             IC L  D   TLI++ F       +G        +  +N NVL  APC+VGIF+D+    
Sbjct:   569 ICTLALDKKATLIVIPF-HKQYAIDGTVDHVNPSIRNINLNVLEKAPCSVGIFIDRGETE 627

Query:   618 CSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITL----SRIYLEENLVEE 673
                S   +    NVAV FI G DD EA+A    ++ +P V +T+     +  L++N V +
Sbjct:   628 GRRSVLMSYTWRNVAVIFIEGRDDAEALAFSMRIAEHPEVSVTMIHFRHKSSLQQNHVVD 687

Query:   674 EDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFS 733
              + +  +  ++NDF       P +  R     D  +      SL    DLV+VGR     
Sbjct:   688 VESELAESYLINDFKNFAMSKPKISYREEIVRDGVETTQVISSLGDSFDLVVVGRDHDLE 747

Query:   734 SRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVI 771
             S +L     W E  ELG+IGDM AS+DF     SVLVI
Sbjct:   748 SSVLYGLTDWSECPELGVIGDMFASSDFH---FSVLVI 782

GO:0005886 "plasma membrane" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2082142 CHX4 "cation/H+ exchanger 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 208/660 (31%), Positives = 351/660 (53%)

Query:   145 VSLTVF-IVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSE 203
             +S+TV  ++  LI   VG ++   +    +  I I  +    ++PV+ + + EL+L NSE
Sbjct:   159 LSITVCALIFFLILRDVGTKKGEPVMSFFEI-IFIYLIQCLSSFPVIGNLLFELRLQNSE 217

Query:   204 LGQLAISSALLHE----IVGLLRLLMAPLSKAKYR--SVAIRIEL----------SLCAM 247
             LG+LA+SSA++ +    I+  + + +  L   K R  SV I   +          ++   
Sbjct:   218 LGRLAMSSAVISDFSTSILSAVLVFLKELKDDKSRLGSVFIGDVIVGNRPMKRAGTVVLF 277

Query:   248 SLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGI 307
               F   +  P + +II+R P  +PVK FYI AI+      A+  D  + +  IG  +LG+
Sbjct:   278 VCFAIYIFRPLMFFIIKRTPSGRPVKKFYIYAIIILVFGSAILADWCKQSIFIGPFILGL 337

Query:   308 VIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIG 367
              +P GPPLGSA+++K E+++   FLPFF     ++ID   + +W    ++ +++  ++I 
Sbjct:   338 AVPHGPPLGSAILQKFESVVFGTFLPFFVATSAEEIDTSILQSWIDLKSIVILVSVSFIV 397

Query:   368 KVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLA 427
             K   + L    +    ++ +  S  ++ KG+ E   +    QR  I   T++VL L  L 
Sbjct:   398 KFALTTLPAFLYGMPAKDCIALSLIMSFKGIFEFGAYGYAYQRGTIRPVTFTVLSLYILL 457

Query:   428 VTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNP 487
              +A++ PL+   Y+P R         +    P+SELRIL  I+  D I  +I+L++A+ P
Sbjct:   458 NSAVIPPLLKRIYDPSRMYAGYEKRNMLHMKPNSELRILSCIYKTDDIRPMINLLEATCP 517

Query:   488 TEMNPICAYVVHLVELVGRAAPVVETY--STQKTKAMANSTDHIMRAVIKYAEGSND--- 542
             +  NP+  YV+HL+ELVG+A PV+ ++   T+K++ M+ +++++   V+ + +  ND   
Sbjct:   518 SRENPVATYVLHLMELVGQANPVLISHRLQTRKSENMSYNSENV---VVSFEQFHNDFFG 574

Query:   543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAAC-----LHGLNN 597
             +V +  +  +S  + MH  IC L  +N  +LI+L F       +G A       +  LN 
Sbjct:   575 SVFVSTYTALSVPKMMHGDICMLALNNTTSLIILPF-HQTWSADGSAIVSDSLMIRQLNK 633

Query:   598 NVLGYAPCTVGIFVDKRLNNCSNSAKP--ANFC-YNVAVFFIGGPDDREAMALVSHMSSN 654
             +VL  +PC+VGIFV  R +N   + K   ANF  Y V + F+GG DDREA++L   M+ +
Sbjct:   634 SVLDLSPCSVGIFV-YRSSNGRRTIKETAANFSSYQVCMLFLGGKDDREALSLAKRMARD 692

Query:   655 PGVRITL-SRIYLEENLVEEED-DKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVN 712
               + IT+ S I  E+   +  D D+ LD  ++ D  ++     ++V      ND+NQ   
Sbjct:   693 SRITITVVSLISSEQRANQATDWDRMLDLELLRDVKSNVLAGADIVFSEEVVNDANQTSQ 752

Query:   713 AFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772
               +S+ ++ DL IVGR++   S   E  + W E++ELGIIGD+L S D      SVLVIQ
Sbjct:   753 LLKSIANEYDLFIVGREKGRKSVFTEGLEEWSEFEELGIIGDLLTSQDL-NCQASVLVIQ 811

GO:0006812 "cation transport" evidence=IEA;IC

GO:0008152 "metabolic process" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 3.8e-75, Sum P(3) = 3.8e-75
 Identities = 178/667 (26%), Positives = 337/667 (50%)

Query:    21 TTCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSN 80
             TTC    ++T    +G+   E  +   LP+++LQ+ +   ++++L  LLRPL+QP+ ++ 
Sbjct:     6 TTCPGPMKATS---NGVFQGENPLEHALPLLILQICIVLLLTRLLAFLLRPLRQPRVIAE 62

Query:    81 TLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIK 140
              + GI+LGPS LG+   F   V   + +      + +G I+F+F+  +++D   + RT K
Sbjct:    63 IVGGILLGPSALGKSTKFINTVFPPKSLTVLDTLANLGLIFFLFLVGLELDPKSLKRTGK 122

Query:   141 KTYSVSLTVFIVPLLISLLVGH--REQY-----KIPRIHDQGISISFVASKCAYPVLVDA 193
             +  S++L    +P ++ +      R        K P +   G+++S  A    +PVL   
Sbjct:   123 RALSIALAGITLPFVLGIGTSFALRSSIADGASKAPFLVFMGVALSITA----FPVLARI 178

Query:   194 ISELKLLNSELGQLAISSALLHEIVG--LLRLLMAPLSKAKYRSVAIRIELSLCAMSLFT 251
             ++E+KLL +++G++A+S+A ++++    LL L +A   +      ++ + LS C   LF 
Sbjct:   179 LAEIKLLTTDIGKIALSAAAVNDVAAWILLALAVALSGEGSSPLTSLWVFLSGCGFVLFC 238

Query:   252 FLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPA 311
               V+ P I+ I +R PE +PV + Y+   L   L  +   D + ++   GA ++G++ P 
Sbjct:   239 IFVVQPGIKLIAKRCPEGEPVNELYVCCTLGIVLAASFVTDFIGIHALFGAFVIGVIFPK 298

Query:   312 GPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVA 371
                  +ALVEK E ++S  FLP +++  G + ++ +I   +++  L L+I  A  GK++ 
Sbjct:   299 EGNFANALVEKVEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVIFNACFGKIIG 358

Query:   372 SILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAI 431
             ++L +   +     +L     +N KG+ EL+     + R +++ Q ++++VL  +  T +
Sbjct:   359 TVLVSLYCKVPLDQSLALGFLMNTKGLVELIVLNIGKDRGVLNDQIFAIMVLMAIFTTFM 418

Query:   432 VTPLISVYYNPQRRLESIAMG--TLQ-TALPDSELRILCGIHDEDHISGIIHLIKASNPT 488
              TPL+   Y P + L        T++ T   +  L ++       +I  I++LI+AS   
Sbjct:   419 TTPLVLAVYKPGKSLTKADYKNRTVEETNRSNKPLCLMFCFQSIMNIPTIVNLIEASRGI 478

Query:   489 EMNP-ICAYVVHLVELVGRAAPVVETYSTQ--------KTKAMANSTDHIMRAVIKYAEG 539
                  +  Y +HL+EL  R++ ++  +  +        K K+  NS+   M  V   A  
Sbjct:   479 NRKENLSVYAMHLMELSERSSAILMAHKVRRNGLPFWNKDKSENNSSSSDMVVVAFEAFR 538

Query:   540 SNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQF---IPPNEETEGRAACLHGLN 596
                 V+++P   IS   T+HE IC+  +     +++L F   +  +   E        +N
Sbjct:   539 RLSRVSVRPMTAISPMATIHEDICQSAERKKTAMVILPFHKHVRLDRTWETTRNDYRWIN 598

Query:   597 NNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPG 656
               V+  +PC+V I VD+ L   +  A  ++F   + V F GG DDREA+A    M+ +PG
Sbjct:   599 KKVMEESPCSVAILVDRGLGGTTRVAS-SDFSLTITVLFFGGNDDREALAFAVRMAEHPG 657

Query:   657 VRITLSR 663
             + +T+ R
Sbjct:   658 ISLTVVR 664

GO:0005634 "nucleus" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;IC

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006885 "regulation of pH" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SIT5	CHX15_ARATH	No assigned EC number	0.3319	0.8277	0.8428	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	836
PLN03159	832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	1e-150
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	2e-28
COG0475	397	COG0475, KefB, Kef-type K+ transport systems, memb	3e-24
TIGR00932	273	TIGR00932, 2a37, transporter, monovalent cation:pr	2e-11
COG4651	408	COG4651, RosB, Kef-type K+ transport system, predi	7e-05

>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional

 Score =  462 bits (1189), Expect = e-150
 Identities = 274/773 (35%), Positives = 435/773 (56%), Gaps = 44/773 (5%)

Query: 48  LPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRG 107
           LP+ +LQ++L    +++L  +L+P +QP+ +S  L G+ILGPS LG+ ++F   +   R 
Sbjct: 41  LPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRS 100

Query: 108 MVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISL---LVGHRE 164
           ++  +  + +G +YF+F+  V+MD  +I RT KK  ++++    +P  I L    + H+ 
Sbjct: 101 VMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQV 160

Query: 165 QYKIPRIHDQGISISFVA---SKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLL 221
              +     QG  I F+    S  A+PVL   ++E+KL+N+ELG++A+S+AL++++   +
Sbjct: 161 SRNV----HQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWI 216

Query: 222 RLLMA-PLSKAKYRSVA-IRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVA 279
            L +A  L++    S+A + + LS  A  LF F V+ P I WIIRR PE +   +FYI  
Sbjct: 217 LLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICL 276

Query: 280 ILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHV 339
           ILTG ++     D++  +   GA + G+VIP GP LG  L+EK E  +S   LP F+   
Sbjct: 277 ILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGP-LGVTLIEKLEDFVSGLLLPLFFAIS 335

Query: 340 GQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVS 399
           G + ++  I     +  L L+I+ A  GK++ +I+    +   FR  +     +N KG+ 
Sbjct: 336 GLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLV 395

Query: 400 ELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALP 459
           E++     R +E++D ++++V+VL  +A+TA++TP+++V Y P RRL      T+Q +  
Sbjct: 396 EMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKH 455

Query: 460 DSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKT 519
           D+ELR+L  +H   ++  II+L++AS+PT+ +PIC YV+HLVEL GRA+ ++  ++T+K+
Sbjct: 456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKS 515

Query: 520 KAMANS-----TDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLI 574
              A +     +DHI+ A   Y E     V++QP   IS Y TMHE +C L +D  ++LI
Sbjct: 516 GRPALNRTQAQSDHIINAFENY-EQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLI 574

Query: 575 LLQFIPPNEETEGRAA---CLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNV 631
           ++ F        G  A      G+N NVL  APC+VGI VD+ L+  +  A      ++V
Sbjct: 575 IIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQV-SHHV 633

Query: 632 AVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEEN------------------LVEE 673
           AV F GGPDDREA+A    MS +PG+ +T+ R    E+                   VE 
Sbjct: 634 AVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVET 693

Query: 674 EDD--KCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQP 731
           +    + LDE  +N+F A N GN ++V      ++  + V A RS+ S +DL IVGR Q 
Sbjct: 694 DGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQG 753

Query: 732 FSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRILKKDPKTV 784
             S L      W E  ELG IGD+LAS+DFA   VSVLV+Q        P  +
Sbjct: 754 MISPLTAGLTDWSECPELGAIGDLLASSDFAA-TVSVLVVQQYVGTGPQPDDL 805

Length = 832

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score =  117 bits (296), Expect = 2e-28
 Identities = 85/382 (22%), Positives = 168/382 (43%), Gaps = 22/382 (5%)

Query: 59  FSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIG 118
             ++ +  +L R L  P  V   L+GI+LGPS LG ++            +  +  + +G
Sbjct: 5   LLLALLAGLLARRLGLPPVVGLILAGILLGPSGLGLVE----------PDLDLEVLAELG 54

Query: 119 GIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISI 178
               +F+  +++D   + +  K    ++L   ++P L+ LL+       IP +    +  
Sbjct: 55  LPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPFLLGLLLALLGGLGIPLLE--ALLF 112

Query: 179 SFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL----MAPLSKAKYR 234
               S  +  V++  + E   LN+ LG L +  ++L++ V ++ L     +A +      
Sbjct: 113 GAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGVGGLSDL 172

Query: 235 SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSM 294
            + + I L +    L   LV    ++ I R        ++  ++ +L  AL+ A+  + +
Sbjct: 173 GLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSG---DRELEVLLVLALALLAALLAELL 229

Query: 295 RVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAF 354
            ++  +GA + G+V+       + L EK E      FLP F++ VG  +D+ S       
Sbjct: 230 GLSGILGAFLAGLVLS-NYAFANELSEKLEPFGYGLFLPLFFVSVGLSLDL-SSLLLSLL 287

Query: 355 AALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELID 414
             + L+++A  +GK++   L       S R AL+       +G   L       Q  LID
Sbjct: 288 LLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVSLALAAIGLQLGLID 347

Query: 415 VQTYSVLVLTNLAVTAIVTPLI 436
            + Y++LV   + +T ++ PL+
Sbjct: 348 RELYTLLVAV-VLLTTLLKPLL 368

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

 Score =  105 bits (265), Expect = 3e-24
 Identities = 76/395 (19%), Positives = 156/395 (39%), Gaps = 32/395 (8%)

Query: 53  LQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQ 112
           LQ+ +   ++ IL  L + L  P  +   L+GIILGP  L  I      +          
Sbjct: 9   LQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELL------- 61

Query: 113 AASTIGGIYFVFINTVKMDKGMIPRTIKKTY-----SVSLTVFIVPLLISLLVGHREQYK 167
             + +G ++ +F+  ++ D       +KK        V+      P L+ LL+       
Sbjct: 62  --AELGVVFLLFLIGLEFD----LERLKKVGRSVGLGVAQVGLTAPFLLGLLLL---LGI 112

Query: 168 IPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAP 227
           +       + +    +  +  +++  + EL LL +  GQL + + +  +I  +L L + P
Sbjct: 113 LGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVP 172

Query: 228 L---SKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGA 284
                 +      + + L++ A      L+    +  + RR+ + +  + F +  +L   
Sbjct: 173 ALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLV- 231

Query: 285 LVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQID 344
           L  A   + + ++  +GA + G+++         L EK E      F+P F+I VG  +D
Sbjct: 232 LGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLD 291

Query: 345 IYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTF 404
           +  +        + L++  A +GK++ + LA      S R AL     +   G    V  
Sbjct: 292 LGVLLE--NLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLA 349

Query: 405 LRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVY 439
                  +        L+   + ++ I TP++ + 
Sbjct: 350 GIALGSAI-----SEALLTAVVILSMITTPILPLL 379

Length = 397

>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 64/281 (22%), Positives = 117/281 (41%), Gaps = 21/281 (7%)

Query: 68  LLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINT 127
           L R L  P  +   L+G+++GPS LG I   +               +  G I  +F+  
Sbjct: 10  LSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEG----------VNHLAEFGVILLMFLIG 59

Query: 128 VKMDKGMIPRTIKKTYSV-SLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCA 186
           +++D   + +  K  + V  L V +  +L+ LL+GH     +       + I  + +  +
Sbjct: 60  LELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLLGLALG----AAVVIGIILALSS 115

Query: 187 YPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPL--SKAKYRSVAIRIELSL 244
             V+V  + E  LL +  GQ  +   L  +I  +  L + PL  + A    VA+ + L  
Sbjct: 116 TAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEHVALALLLLK 175

Query: 245 CAMS-LFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAA 303
             ++ L   L+    ++ ++R   E +P  + +    L      A   D + ++  +GA 
Sbjct: 176 VFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLSMALGAF 234

Query: 304 MLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQID 344
           + G+V+         L    E I     LP F+I VG  +D
Sbjct: 235 LAGVVLSES-EYRHKLESDLEPIGG-VLLPLFFISVGMSVD 273

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 273

>gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 18/230 (7%)

Query: 173 DQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAP----- 227
             GI      S  +  VL+ A+ E +L++++ G++AI   ++ ++  +L L++ P     
Sbjct: 115 GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGV 174

Query: 228 LSKAKYRSVAIRIELSLCAMSLFTF-----LVLWPTIQWIIRRIPERKPVKDFYIVAILT 282
           L +       + ++L +    +  F     +V    I WI+ R+      ++ + +A+L 
Sbjct: 175 LGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERV-AATGSRELFTLAVLA 233

Query: 283 GALVMAV-ACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQ 341
            AL +A  A +   V++ +GA   G+V+ A   L     E S   L + F   F++ VG 
Sbjct: 234 IALGVAFGAAELFGVSFALGAFFAGMVL-AESELSHRAAEDSLP-LRDAFAVLFFVSVGM 291

Query: 342 QIDIYS-INNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFS 390
             D    I    A  A  LII+    GK VA+      F    R AL  S
Sbjct: 292 LFDPMILIQQPLAVLATLLIIL---FGKSVAAFFIVRAFGHPVRTALTIS 338

Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	836
PLN03159	832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650	769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562	621	glutathione-regulated potassium-efflux system prot	100.0
PRK10669	558	putative cation:proton antiport protein; Provision	100.0
PRK03659	601	glutathione-regulated potassium-efflux system prot	100.0
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326	562	potassium/proton antiporter; Reviewed	100.0
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	100.0
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.96
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.95
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.93
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.9
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.9
PRK11175	305	universal stress protein UspE; Provisional	99.83
KOG4505	467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.74
PRK14853	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.72
KOG1965	575	consensus Sodium/hydrogen exchanger protein [Inorg	99.69
TIGR00773	373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.49
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.42
PRK14856	438	nhaA pH-dependent sodium/proton antiporter; Provis	99.21
PRK15456	142	universal stress protein UspG; Provisional	99.15
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	99.15
PRK15005	144	universal stress protein F; Provisional	99.13
PRK09560	389	nhaA pH-dependent sodium/proton antiporter; Review	99.09
PRK15118	144	universal stress global response regulator UspA; P	99.08
PRK09561	388	nhaA pH-dependent sodium/proton antiporter; Review	99.06
PRK09982	142	universal stress protein UspD; Provisional	99.05
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	99.05
PRK14854	383	nhaA pH-dependent sodium/proton antiporter; Provis	99.02
cd01987	124	USP_OKCHK USP domain is located between the N-term	99.01
PRK14855	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.0
PRK15005	144	universal stress protein F; Provisional	98.99
PRK09982	142	universal stress protein UspD; Provisional	98.95
PF00582	140	Usp: Universal stress protein family; InterPro: IP	98.94
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.9
PRK15456	142	universal stress protein UspG; Provisional	98.9
PF06965	378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.89
KOG1966	670	consensus Sodium/hydrogen exchanger protein [Inorg	98.85
PF00582	140	Usp: Universal stress protein family; InterPro: IP	98.83
PRK10116	142	universal stress protein UspC; Provisional	98.78
PRK15118	144	universal stress global response regulator UspA; P	98.76
COG3004	390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.76
PRK11175	305	universal stress protein UspE; Provisional	98.74
PRK10116	142	universal stress protein UspC; Provisional	98.71
cd00293	130	USP_Like Usp: Universal stress protein family. The	98.66
cd01987	124	USP_OKCHK USP domain is located between the N-term	98.63
cd00293	130	USP_Like Usp: Universal stress protein family. The	98.52
COG0589	154	UspA Universal stress protein UspA and related nuc	98.29
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	97.87
COG0589	154	UspA Universal stress protein UspA and related nuc	97.85
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	97.78
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	97.71
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	97.39
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.3
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	97.22
TIGR00698	335	conserved hypothetical integral membrane protein.	97.21
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.1
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	96.63
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	96.58
COG0385	319	Predicted Na+-dependent transporter [General funct	96.53
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	96.53
PRK10490	895	sensor protein KdpD; Provisional	96.52
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	96.36
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.27
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	96.22
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.2
PRK10490	895	sensor protein KdpD; Provisional	96.06
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	95.99
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	95.82
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.81
PRK10669	558	putative cation:proton antiport protein; Provision	95.81
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	95.74
COG3493	438	CitS Na+/citrate symporter [Energy production and	95.55
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	95.53
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.49
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	95.45
TIGR00930	953	2a30 K-Cl cotransporter.	95.45
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	95.4
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	95.35
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	95.23
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	95.14
COG2855	334	Predicted membrane protein [Function unknown]	94.86
PRK05326	562	potassium/proton antiporter; Reviewed	94.83
PRK03818	552	putative transporter; Validated	94.52
cd01984	86	AANH_like Adenine nucleotide alpha hydrolases supe	94.39
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	94.08
COG2205	890	KdpD Osmosensitive K+ channel histidine kinase [Si	93.89
TIGR00698	335	conserved hypothetical integral membrane protein.	93.76
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	93.7
PLN03159	832	cation/H(+) antiporter 15; Provisional	93.65
COG2205	890	KdpD Osmosensitive K+ channel histidine kinase [Si	93.42
COG2855	334	Predicted membrane protein [Function unknown]	92.79
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	92.26
TIGR00841	286	bass bile acid transporter. Functionally character	92.14
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	91.57
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	91.53
PRK04972	558	putative transporter; Provisional	91.41
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	91.2
TIGR01625	154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	90.29
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	88.24
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	87.72
PRK04288	232	antiholin-like protein LrgB; Provisional	87.19
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	86.83
COG2985	544	Predicted permease [General function prediction on	86.53
COG3329	372	Predicted permease [General function prediction on	85.95
PF02040	423	ArsB: Arsenical pump membrane protein; InterPro: I	85.86
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	85.62
PRK03359	256	putative electron transfer flavoprotein FixA; Revi	85.44
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	85.2
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	84.54
PRK04972	558	putative transporter; Provisional	84.43
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	84.01
cd01984	86	AANH_like Adenine nucleotide alpha hydrolases supe	83.94
PF01171	182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	83.54
TIGR02432	189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	82.83
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	82.58
PRK12342	254	hypothetical protein; Provisional	82.49
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	81.71
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	81.53
PRK03818	552	putative transporter; Validated	80.43

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=100.00  E-value=2.4e-145  Score=1312.88  Aligned_cols=753  Identities=35%  Similarity=0.609  Sum_probs=685.2

Q ss_pred             cccccCccccccccCccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceecccccccccccccc
Q 003256           22 TCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAY  101 (836)
Q Consensus        22 ~C~~~~~~~~~~s~gi~~~~~pl~~~l~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~  101 (836)
                      +|+..++.   +|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|.++.+.+.
T Consensus        18 ~c~~~~~~---~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~   94 (832)
T PLN03159         18 VCYAPMMI---TTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANT   94 (832)
T ss_pred             ccccCCCc---cCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhh
Confidence            59954455   999999999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhcccccc--chHHHHHH
Q 003256          102 VTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRI--HDQGISIS  179 (836)
Q Consensus       102 lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~--~~~sl~lg  179 (836)
                      +||.++.+.+++++++|++|+||++|+|+|++.+|+++|+++.+|+.++++|+++|++++++++......  ....+++|
T Consensus        95 ~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g  174 (832)
T PLN03159         95 IFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLG  174 (832)
T ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence            9998888899999999999999999999999999999999999999999999999998888774321100  11248999


Q ss_pred             HhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHH
Q 003256          180 FVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYR-SVAIRIELSLCAMSLFTFLVLWP  257 (836)
Q Consensus       180 ~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~v~r~  257 (836)
                      +++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++ +..+...+.. ...++.++..++|++++++++||
T Consensus       175 ~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~  254 (832)
T PLN03159        175 VALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRP  254 (832)
T ss_pred             HHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999 7665433322 34566777778888899999999


Q ss_pred             HHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 003256          258 TIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYI  337 (836)
Q Consensus       258 ~~~~i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~  337 (836)
                      ++.|+.+|++++++.++.++.++++++++++++++.+|+|+++|||++|+++|+. |+++++.+|++++++++|+|+||+
T Consensus       255 ~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~-~~~~~l~ekle~~~~~lflPlFFv  333 (832)
T PLN03159        255 GIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-PLGVTLIEKLEDFVSGLLLPLFFA  333 (832)
T ss_pred             HHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888889999999999999999999999999999999999999984 899999999999999999999999


Q ss_pred             HhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhh
Q 003256          338 HVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQT  417 (836)
Q Consensus       338 ~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~  417 (836)
                      ++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.|+++++.
T Consensus       334 ~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~  413 (832)
T PLN03159        334 ISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDES  413 (832)
T ss_pred             HhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchh
Confidence            99999999887644456666677788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccccchhhhhhhcccccCCCCccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEE
Q 003256          418 YSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYV  497 (836)
Q Consensus       418 ~~~~vl~~lv~t~i~~plv~~l~~p~~~~~~~~~r~i~~~~~~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~  497 (836)
                      |++++++++++|.+++|+++++|+|+|||..|++|++|+.++++|+|||+|+|+++|++++++|++++++++++|+++|+
T Consensus       414 f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~  493 (832)
T PLN03159        414 FAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYV  493 (832)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccCCCccchhccccccccc-----ccCchHHHHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCc
Q 003256          498 VHLVELVGRAAPVVETYSTQKTKA-----MANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCIT  572 (836)
Q Consensus       498 lhlvel~~r~~p~~~~~~~~~~~~-----~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~ad  572 (836)
                      +||||+++|++|++++|+.+++..     ...++++++++|+.|++++ +.++|+++|++||+++||+|||+.|+|+++|
T Consensus       494 lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~s  572 (832)
T PLN03159        494 LHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCNLAEDKRVS  572 (832)
T ss_pred             EEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHHHHHhcCCC
Confidence            999999999999999998753211     2345789999999999754 6899999999999999999999999999999


Q ss_pred             EEEEecCCC---CCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHH
Q 003256          573 LILLQFIPP---NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVS  649 (836)
Q Consensus       573 lIi~~~h~~---~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~  649 (836)
                      +||+||||+   ||+++.++..+|.+|++||++||||||||||||... ..+.+.....+||+++|+|||||||||+||+
T Consensus       573 lIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~-~~~~~~~~~~~~v~~~F~GG~DDREALa~a~  651 (832)
T PLN03159        573 LIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSG-ATRLASNQVSHHVAVLFFGGPDDREALAYAW  651 (832)
T ss_pred             EEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCc-cccccccccceeEEEEecCCcchHHHHHHHH
Confidence            999999998   788888888999999999999999999999999652 1122334457899999999999999999999


Q ss_pred             HhhcCCCeEEEEEEEeecCCccc--------------------chhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHH
Q 003256          650 HMSSNPGVRITLSRIYLEENLVE--------------------EEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQ  709 (836)
Q Consensus       650 rmA~~~~~~Ltvvrv~~~~~~~~--------------------~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~  709 (836)
                      |||+||++++||+||++++...+                    ++.|+++||++++||+.++.+++++.|.|+.|+||+|
T Consensus       652 rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e  731 (832)
T PLN03159        652 RMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEE  731 (832)
T ss_pred             HHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHH
Confidence            99999999999999997532211                    3568889999999999998877899999999999999


Q ss_pred             HHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeeccccCCCh
Q 003256          710 LVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRILKKDP  781 (836)
Q Consensus       710 ~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~~~~~~~~  781 (836)
                      +.++||+++++|||+||||+|+.+|++|+||+||+||||||+|||+|||+|| .+++||||||||+....+|
T Consensus       732 ~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~-~~~~SVLVvQQ~~~~~~~~  802 (832)
T PLN03159        732 TVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDF-AATVSVLVVQQYVGTGPQP  802 (832)
T ss_pred             HHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCC-CCceeEEEEEeeccCCCCc
Confidence            9999999998999999999988779999999999999999999999999999 9999999999998665555

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.8e-119  Score=1065.54  Aligned_cols=739  Identities=34%  Similarity=0.557  Sum_probs=674.8

Q ss_pred             cccCccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHH
Q 003256           33 SYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQ  112 (836)
Q Consensus        33 ~s~gi~~~~~pl~~~l~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~  112 (836)
                      .+.|.|.++||++|++|++++|+.+++++++++++++||+|||++++++++||++||+.+|.++.+.+.+||.++...++
T Consensus         6 ~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~   85 (769)
T KOG1650|consen    6 TSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLE   85 (769)
T ss_pred             ccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             HHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccc-h----H-H-HHHHHhhccc
Q 003256          113 AASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIH-D----Q-G-ISISFVASKC  185 (836)
Q Consensus       113 ~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~-~----~-s-l~lg~~ls~T  185 (836)
                      +++.+|+.+|+|+.|+|+|.+.+++.+|++..+|+.++++|+..|.++...+........ .    . . .++..+++.|
T Consensus        86 ~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~t  165 (769)
T KOG1650|consen   86 LLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSIT  165 (769)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999888877753332211 1    1 2 7888999999


Q ss_pred             cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          186 AYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKY--RSVAIRIELSLCAMSLFTFLVLWPTIQWI  262 (836)
Q Consensus       186 s~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~v~r~~~~~i  262 (836)
                      +||+++++|.|+|++++++||+++++++++|+.+|.+++ .........  .....|.+...+++++++.+++||++.|+
T Consensus       166 sfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi  245 (769)
T KOG1650|consen  166 SFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWI  245 (769)
T ss_pred             hhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHH
Confidence            999999999999999999999999999999999999888 666554332  24457788888889999999999999999


Q ss_pred             HHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003256          263 IRRIPERKPVKDFYIVAILTGALVMAVACDSMR-VNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQ  341 (836)
Q Consensus       263 ~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G-~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl  341 (836)
                      .+|+|+++|+++.+...++..+++++.+++.++ +|+++|||+.|+++|++||+++.+.+|+|++.+++|+|+||+.+|+
T Consensus       246 ~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~  325 (769)
T KOG1650|consen  246 IKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGL  325 (769)
T ss_pred             hhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999988 8999999999999999999999999999999999999999999999


Q ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHH
Q 003256          342 QIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVL  421 (836)
Q Consensus       342 ~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~  421 (836)
                      ++|+..+..   |......+...+++|++++..++.++|+|+||++.+|++|++||.+|++.++.+.+.|+++++.|+++
T Consensus       326 k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~  402 (769)
T KOG1650|consen  326 KTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVM  402 (769)
T ss_pred             ceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHH
Confidence            999998873   76677778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHhccccchhhhhhhcccccCCCCccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEe
Q 003256          422 VLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLV  501 (836)
Q Consensus       422 vl~~lv~t~i~~plv~~l~~p~~~~~~~~~r~i~~~~~~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlv  501 (836)
                      +++++++|.+++|+++.+|||.+++.+|++|++|+.++++++|+|.|+|++++++++++++|++.+++++|.++|++|+|
T Consensus       403 vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlv  482 (769)
T KOG1650|consen  403 VLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYALHLV  482 (769)
T ss_pred             HHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999988889999999999


Q ss_pred             eccCCCccchhccccccc-cc--ccCchHHHHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEec
Q 003256          502 ELVGRAAPVVETYSTQKT-KA--MANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQF  578 (836)
Q Consensus       502 el~~r~~p~~~~~~~~~~-~~--~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~  578 (836)
                      |+.+|+.|+++.|+.++. ..  .....+++..+|+.|++.+++.+.++++|++||+.+||+|||.+|.++++++|++||
T Consensus       483 eL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpf  562 (769)
T KOG1650|consen  483 ELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIILPF  562 (769)
T ss_pred             ecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEeeh
Confidence            999999999999987654 22  333456899999999885457799999999999999999999999999999999999


Q ss_pred             CCC---CCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCC
Q 003256          579 IPP---NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNP  655 (836)
Q Consensus       579 h~~---~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~  655 (836)
                      |++   +|..+..+..+|++|++|+++|||||||++|||.. +..........++|++.|+||+||||||+++.||++|+
T Consensus       563 hk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~-~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~  641 (769)
T KOG1650|consen  563 HKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLR-RSGVTQKRGSSYKVVVLFLGGKDDREALALAKRMAENP  641 (769)
T ss_pred             hhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcc-cccceecccceeEEEEEecCChhhHHHHHHHHHHhhCC
Confidence            998   45788888999999999999999999999999822 22122222367899999999999999999999999999


Q ss_pred             CeEEEEEEEeecCCccc----chhhhhhHHHHHHHH-HhhcCCCCCEEEE-EEEcCChHHHHHHHHhcccCCcEEEEccc
Q 003256          656 GVRITLSRIYLEENLVE----EEDDKCLDEVVMNDF-MASNFGNPNVVCR-RIDANDSNQLVNAFRSLVSDNDLVIVGRQ  729 (836)
Q Consensus       656 ~~~Ltvvrv~~~~~~~~----~~~e~~~d~~~l~~~-~~~~~~~~~v~y~-e~~v~~g~~~~~~i~~~~~~~DLiivG~~  729 (836)
                      ++++||+|++++++..+    +++++..|++..+++ +.....+.++.|. |+.+.++.|+.++++++.++|||++|||+
T Consensus       642 ~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~  721 (769)
T KOG1650|consen  642 RVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSITEDYDLFIVGRS  721 (769)
T ss_pred             ceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhccccceEEEecc
Confidence            99999999998654322    366778888888887 5455455577788 69999999999999999999999999999


Q ss_pred             CCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeeccc
Q 003256          730 QPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRI  776 (836)
Q Consensus       730 ~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~~~  776 (836)
                      ++.+++.+.|+++|+||||||+|||.|+|+|| .++.||||+|||.+
T Consensus       722 ~~~~~~~t~gl~~W~e~pELg~IGd~las~~~-~~~~svlvvqq~~~  767 (769)
T KOG1650|consen  722 HGMLSEATGGLSEWSECPELGVIGDLLASSDF-SSKVSVLVVQQQLY  767 (769)
T ss_pred             cccccchhcCchhcccCccccccCcccccccc-CccceEEEEEeeec
Confidence            99999999999999999999999999999999 99999999999965

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=100.00  E-value=5.7e-46  Score=438.68  Aligned_cols=369  Identities=14%  Similarity=0.202  Sum_probs=310.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhc
Q 003256           50 VVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVK  129 (836)
Q Consensus        50 ~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle  129 (836)
                      .++.|+.+++.++.++..++||+|+|+++|||++|+++||+++|.+++          .+.++.++++|++++||.+|+|
T Consensus         5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~----------~~~i~~laelGvv~LlF~iGLE   74 (621)
T PRK03562          5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD----------VESILHFAEFGVVLMLFVIGLE   74 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC----------HHHHHHHHHHHHHHHHHHHHhC
Confidence            378999999999999999999999999999999999999999998642          4668899999999999999999


Q ss_pred             cCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHH
Q 003256          130 MDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAI  209 (836)
Q Consensus       130 ~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~l  209 (836)
                      +|++.+++.+|+++.+|..++++++++++.++++++..+.    .++++|.+++.||++++.++|+|+|+++++.||.++
T Consensus        75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~----~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l  150 (621)
T PRK03562         75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQ----VALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAF  150 (621)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHH
Confidence            9999999999999999999999999998888877765443    579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHhhcc-cc-hhHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 003256          210 SSALLHEIVGLLRLL-MAPLSKA-KY-RSVA-IRIELSL----CAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAIL  281 (836)
Q Consensus       210 s~a~v~Di~~~~ll~-~~~~~~~-~~-~~~~-~~~~~~~----v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il  281 (836)
                      +.++++|+.+|++++ +..+... .. .... ...++..    ++++++..++.+|++.|+.++     +.+|.+...++
T Consensus       151 ~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-----~~~e~~~~~~l  225 (621)
T PRK03562        151 AILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-----GLREVFTAVAL  225 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHHHHH
Confidence            999999999999988 6444322 11 1111 1122222    222233344556666665543     23678888888


Q ss_pred             HHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 003256          282 TGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELII  361 (836)
Q Consensus       282 ~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii  361 (836)
                      +++++++++++.+|+|+++|||++|+++++. ++++++.++++++ .++|+|+||+++|+++|+..+.  ..++.++.++
T Consensus       226 ~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~--~~~~~il~~~  301 (621)
T PRK03562        226 FLVFGFGLLMEEVGLSMALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLL--ENPLRILILL  301 (621)
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHH--HHHHHHHHHH
Confidence            8899999999999999999999999999986 7899999999998 7999999999999999998775  2333344555


Q ss_pred             HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 003256          362 MAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYN  441 (836)
Q Consensus       362 ~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~  441 (836)
                      ++.+++|++++++.++++|+++++++.+|++|+++|+++++++.++.+.|+++++.|+.+++++++ |.+.+|++..+|+
T Consensus       302 ~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~l-S~~~tP~l~~~~~  380 (621)
T PRK03562        302 LGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVAL-SMAATPLLLVLLD  380 (621)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence            667899999999999999999999999999999999999999999999999999999999987766 5666666666665


Q ss_pred             c
Q 003256          442 P  442 (836)
Q Consensus       442 p  442 (836)
                      +
T Consensus       381 ~  381 (621)
T PRK03562        381 R  381 (621)
T ss_pred             H
Confidence            4

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=100.00  E-value=1.2e-45  Score=434.45  Aligned_cols=372  Identities=17%  Similarity=0.248  Sum_probs=316.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhcc
Q 003256           51 VMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKM  130 (836)
Q Consensus        51 ~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~  130 (836)
                      ++..+.++++++.+++.++||+|+|.+++||++|+++||+++|..+          ..+.++.++++|++++||.+|+|+
T Consensus         7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~   76 (558)
T PRK10669          7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF   76 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence            4567788899999999999999999999999999999999998743          236788999999999999999999


Q ss_pred             CcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHH
Q 003256          131 DKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAIS  210 (836)
Q Consensus       131 d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls  210 (836)
                      |++.+++.++.....++.++++|++++++++++++..+.    .++++|++++.||++++.++|+|+|+++++.||++++
T Consensus        77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~  152 (558)
T PRK10669         77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSLM----TGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIG  152 (558)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHH
Confidence            999999998888878888999999999888877764332    5688999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHhhc---ccc-h-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 003256          211 SALLHEIVGLLRLL-MAPLSK---AKY-R-S----VAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAI  280 (836)
Q Consensus       211 ~a~v~Di~~~~ll~-~~~~~~---~~~-~-~----~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~i  280 (836)
                      +++++|+.+|+++. +..+..   .+. + .    ...+.++..++++++++++.|+++.|+.++.++.+ .+|.+...+
T Consensus       153 ~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~~  231 (558)
T PRK10669        153 WLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLSV  231 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHH
Confidence            99999999998887 544321   111 1 1    12344556667777788899999999999987653 578888878


Q ss_pred             HHHHHHHHHH-HHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH
Q 003256          281 LTGALVMAVA-CDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALEL  359 (836)
Q Consensus       281 l~~~l~~~~i-ae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~  359 (836)
                      +++++++++. ++.+|+|+++|||++|+++|+. +.++++.+...++ .++|+|+||+++|+++|+..+.  ..+.....
T Consensus       232 l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~--~~~~~~~~  307 (558)
T PRK10669        232 LALALGIAFGAVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILI--QQPLAVLA  307 (558)
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHH--HHHHHHHH
Confidence            8888877764 6999999999999999999986 6777787777775 7889999999999999998775  23333445


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 003256          360 IIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVY  439 (836)
Q Consensus       360 ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l  439 (836)
                      ++++.+++|++++++.++++|+++|+++.+|+.|++||+++++++..+++.|+++++.|++++++++++++++|.+.++.
T Consensus       308 ~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~  387 (558)
T PRK10669        308 TLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL  387 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56677899999999999999999999999999999999999999999999999999999999999999887777777765


Q ss_pred             cc
Q 003256          440 YN  441 (836)
Q Consensus       440 ~~  441 (836)
                      .+
T Consensus       388 ~~  389 (558)
T PRK10669        388 ER  389 (558)
T ss_pred             hH
Confidence            44

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=100.00  E-value=3.7e-45  Score=431.19  Aligned_cols=368  Identities=15%  Similarity=0.203  Sum_probs=307.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhcc
Q 003256           51 VMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKM  130 (836)
Q Consensus        51 ~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~  130 (836)
                      ++.++.+++.++.++..++||+|+|+++||+++|+++||+++|.+++          .+.+..++++|++++||.+|+|+
T Consensus         6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~----------~~~i~~laelGvv~LLF~iGLel   75 (601)
T PRK03659          6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD----------VDEILHFSELGVVFLMFIIGLEL   75 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc----------HHHHHHHHHHHHHHHHHHHHhcC
Confidence            57788999999999999999999999999999999999999998642          35678999999999999999999


Q ss_pred             CcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHH
Q 003256          131 DKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAIS  210 (836)
Q Consensus       131 d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls  210 (836)
                      |++.+++.+|+++.+|..++++|+++++++.++++..+    ..++++|++++.||++++.++|+|+|+++++.||++++
T Consensus        76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~~----~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~  151 (601)
T PRK03659         76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFSW----QAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFS  151 (601)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHH
Confidence            99999999999999999999999988777766654333    25788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHhhcccchh-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHH
Q 003256          211 SALLHEIVGLLRLL-MAPLSKAKYRS-VAI---RIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGAL  285 (836)
Q Consensus       211 ~a~v~Di~~~~ll~-~~~~~~~~~~~-~~~---~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l  285 (836)
                      ..+++|+.++++++ ...+....... .+.   +.++..++++++..++.+|++.|+.+.     +.+|.+...++++++
T Consensus       152 vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~vl  226 (601)
T PRK03659        152 VLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLLVL  226 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHH
Confidence            99999999998888 54443222111 111   111222222223334555555555433     346888888888899


Q ss_pred             HHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Q 003256          286 VMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAY  365 (836)
Q Consensus       286 ~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~  365 (836)
                      +++++++.+|+|+++|||++|+++++. ++++++.++++++ .++|+|+||+++|+++|+..+.  ..|..++.++++.+
T Consensus       227 ~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~--~~~~~il~~~~~~l  302 (601)
T PRK03659        227 GSALFMDALGLSMALGTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLY--THLLWVLISVVVLV  302 (601)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHH--HhHHHHHHHHHHHH
Confidence            999999999999999999999999996 7889999999998 7999999999999999998775  33444555666778


Q ss_pred             HHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHhccc
Q 003256          366 IGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNP  442 (836)
Q Consensus       366 ~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p  442 (836)
                      ++|++++++.++++|+++++++.+|+.|+++|+++++++..+.+.|+++++.|+.++++++++ .+.+|++..+|+|
T Consensus       303 ~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls-~~~tP~l~~~~~~  378 (601)
T PRK03659        303 AVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLS-MMTTPLLMKLIDK  378 (601)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhHH
Confidence            899999999999999999999999999999999999999999999999999999998777775 4667777777665

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-43  Score=396.46  Aligned_cols=375  Identities=20%  Similarity=0.304  Sum_probs=320.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhc
Q 003256           50 VVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVK  129 (836)
Q Consensus        50 ~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle  129 (836)
                      ..+.|+.++++++.+++.++||+|+|+++||+++|+++||..++..         .+..+.++.++++|++++||.+|+|
T Consensus         6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GLE   76 (397)
T COG0475           6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGLE   76 (397)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHHC
Confidence            4688999999999999999999999999999999999999544432         2357899999999999999999999


Q ss_pred             cCcchhhhccch-hhHHHHHHHHHHHHHHHHHHHH-hhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHH
Q 003256          130 MDKGMIPRTIKK-TYSVSLTVFIVPLLISLLVGHR-EQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQL  207 (836)
Q Consensus       130 ~d~~~l~~~~~~-~~~ia~~~~l~p~~lg~~~~~~-l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l  207 (836)
                      +|++++|+++|+ +...+..++..|+.++....+. ++..+.    .++++|.+++.||+++++++++|+|..+++.|++
T Consensus        77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~----~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~  152 (397)
T COG0475          77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLI----AALFLGAALALSSTAIVLKILMELGLLKTREGQL  152 (397)
T ss_pred             cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccChH----HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            999999999999 8888888888998888655543 444433    5799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHH
Q 003256          208 AISSALLHEIVGLLRLL-MAPLSKAKYR--SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGA  284 (836)
Q Consensus       208 ~ls~a~v~Di~~~~ll~-~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~  284 (836)
                      ++++++++|+.++++++ ...+..++..  ..++.......+|.++..+..|++..|+.|+..+. +.+|.....++.++
T Consensus       153 ~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~i~  231 (397)
T COG0475         153 ILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLLLV  231 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHH
Confidence            99999999999999999 7776644332  22345555666666666666678888888876542 34788999999999


Q ss_pred             HHHHHHHHHhchhHHHHHHHHHhhccCCCCch-hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Q 003256          285 LVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG-SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMA  363 (836)
Q Consensus       285 l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~-~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~  363 (836)
                      +.+++++|.+|+|+++|||++|+++++. +.+ ++++++++++.+++|+|+||+.+|+.+|+..+.  ..+..+..++.+
T Consensus       232 l~~a~l~e~~gls~ilGAFlaGl~ls~~-~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~--~~~~~~l~~~~~  308 (397)
T COG0475         232 LGAAYLAELLGLSMILGAFLAGLLLSES-EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLL--ENLLLILLLVAL  308 (397)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHhccc-ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHh--ccHHHHHHHHHH
Confidence            9999999999999999999999999998 455 799999999987799999999999999999987  334446677778


Q ss_pred             HHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHhccc
Q 003256          364 AYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNP  442 (836)
Q Consensus       364 ~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p  442 (836)
                      ..++|++++++.++..|.+.|++...|+.+.++|+++++.++.+.+ +.++++.++.++.+++++|.+.+.+.+.+++.
T Consensus       309 ~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~  386 (397)
T COG0475         309 AILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKR  386 (397)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999998887 67888999988888888777777677766643

>PRK05326 potassium/proton antiporter; Reviewed

Probab=100.00  E-value=7.6e-39  Score=376.58  Aligned_cols=377  Identities=13%  Similarity=0.119  Sum_probs=311.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhh
Q 003256           49 PVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTV  128 (836)
Q Consensus        49 ~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gl  128 (836)
                      ..++++++++++++.+++.+++|+++|.+++++++|+++||+++|.++.        +..+..+.++++|+++++|..|+
T Consensus         5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~--------~~~~~~~~i~~l~L~~iLF~~Gl   76 (562)
T PRK05326          5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF--------DNYPLAYLVGNLALAVILFDGGL   76 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc--------CcHHHHHHHHHHHHHHHHHcCcc
Confidence            3578899999999999999999999999999999999999999986431        23567899999999999999999


Q ss_pred             ccCcchhhhccchhhHHHHHHHHHHHHHHHHHH-HHhhccccccchHHHHHHHhhccccHHHHHHHHHhccc-cCChhHH
Q 003256          129 KMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVG-HREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKL-LNSELGQ  206 (836)
Q Consensus       129 e~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~-~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l-~~s~~g~  206 (836)
                      |+|++.+|+.+++++.++..++++|++++...+ ++++..+    ..++++|++++.||++++.++++|.|+ +++++++
T Consensus        77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~----~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~  152 (562)
T PRK05326         77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLDW----LEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVAS  152 (562)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH----HHHHHHhhhhccCchHHHHHHHhccCCCcchhHHh
Confidence            999999999999999999999999998855444 4444333    357999999999999999999999995 7999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhcccc-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 003256          207 LAISSALLHEIVGLLRLL-MAPLSKAKY-R--SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILT  282 (836)
Q Consensus       207 l~ls~a~v~Di~~~~ll~-~~~~~~~~~-~--~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~  282 (836)
                      ++.+++.+||.++++++. +..+...+. .  ...+..++..+++.++.+++.++++.|+++|...  ..++.+..++++
T Consensus       153 ~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~--~~~~~~~i~~l~  230 (562)
T PRK05326        153 TLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL--PAEGLYPILVLA  230 (562)
T ss_pred             HhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHHHHH
Confidence            999999999999998887 655443222 1  2223344555666777788888999999998743  124567888888


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Q 003256          283 GALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIM  362 (836)
Q Consensus       283 ~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~  362 (836)
                      ++++++++++.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|+..+. ...+...++.++
T Consensus       231 ~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~-~~~~~~l~i~~~  309 (562)
T PRK05326        231 GALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLL-DIALPALLLALF  309 (562)
T ss_pred             HHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999986555555666666668899999999999999998775 222332333345


Q ss_pred             HHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccc-hhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 003256          363 AAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELID-VQTYSVLVLTNLAVTAIVTPLISVYYN  441 (836)
Q Consensus       363 ~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~-~~~~~~~vl~~lv~t~i~~plv~~l~~  441 (836)
                      +.+++|+++++++++.+++++||++.+||. ++||.++++++..+...++.+ +..|.++.+++++++++.++.++.+.+
T Consensus       310 l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~  388 (562)
T PRK05326        310 LILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAAR  388 (562)
T ss_pred             HHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHH
Confidence            667899999999999999999999999995 899999999999999999886 466788888888888888877777664

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=100.00  E-value=1.2e-38  Score=358.99  Aligned_cols=370  Identities=21%  Similarity=0.368  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhh
Q 003256           57 LAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIP  136 (836)
Q Consensus        57 lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~  136 (836)
                      ++++.+.+.+.++||+++|.+++|+++|+++||..++..+.       .  ....+.++++|+.+++|.+|+|+|.+.+|
T Consensus         3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~-------~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~   73 (380)
T PF00999_consen    3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP-------D--NPSFELLAEIGLAFLLFEAGLELDIKELR   73 (380)
T ss_dssp             ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred             EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc-------h--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            34555667777899999999999999999999998875331       1  36778899999999999999999999999


Q ss_pred             hccchhhHHHHHHHHHHHHH-HHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHHH
Q 003256          137 RTIKKTYSVSLTVFIVPLLI-SLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLH  215 (836)
Q Consensus       137 ~~~~~~~~ia~~~~l~p~~l-g~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~  215 (836)
                      +++++++.+++.++++|+++ ++.+++++. ....+...++++|.+++.||++++.++++|.+..+++.++++++++++|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~  152 (380)
T PF00999_consen   74 RNWRRALALGLVGFLLPFILVGFLLSFFLF-ILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVIN  152 (380)
T ss_dssp             -----------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTT
T ss_pred             cccccccccccceeeehhhHHHHHHHHhhc-cchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhh
Confidence            99999999999999999998 766664321 1111122469999999999999999999998889999999999999999


Q ss_pred             HHHHHHHHH-HHHhhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHH
Q 003256          216 EIVGLLRLL-MAPLSKAKYR---SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVAC  291 (836)
Q Consensus       216 Di~~~~ll~-~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~~~~ia  291 (836)
                      |+++++++. .....+....   ......++..+...++.+++.+++..|+.++.   ++.++.+..+++++++..++++
T Consensus       153 d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a  229 (380)
T PF00999_consen  153 DIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLA  229 (380)
T ss_dssp             TTTTTTTT------------------------------------------------------------------------
T ss_pred             ccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhcccc
Confidence            999998888 6655421111   11112222233333333444444444444442   2446788899999999999999


Q ss_pred             HHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHH
Q 003256          292 DSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVV  370 (836)
Q Consensus       292 e~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~  370 (836)
                      |.+|.|+++|+|++|+++++. +.++++.++++++.++++.|+||+++|+++|++.+. +...+.....+.+..+++|++
T Consensus       230 ~~~g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~  308 (380)
T PF00999_consen  230 EILGLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFI  308 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhc
Confidence            999999999999999999955 777789999999988999999999999999988873 234555566666677789999


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHhc
Q 003256          371 ASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYY  440 (836)
Q Consensus       371 ~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~  440 (836)
                      ++++.+++.|.++||+..+|+.|++||+++++++..+.+.|+++++.+++++.++++++.+.|+.++.+.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~  378 (380)
T PF00999_consen  309 GVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL  378 (380)
T ss_dssp             --------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred             eeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999998888887777654

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=100.00  E-value=1.9e-34  Score=310.05  Aligned_cols=268  Identities=22%  Similarity=0.344  Sum_probs=229.9

Q ss_pred             HHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhcc
Q 003256           60 SISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTI  139 (836)
Q Consensus        60 ~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~  139 (836)
                      +++.+++.++||+++|++++++++|+++||+++|.+++          .+.++.++++|+.+++|.+|+|+|++.+|+++
T Consensus         2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~----------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~   71 (273)
T TIGR00932         2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN----------VEGVNHLAEFGVILLMFLIGLELDLERLWKLR   71 (273)
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC----------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            46778899999999999999999999999999987542          36799999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHH-HHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHH
Q 003256          140 KKTYSVSLTVFIVP-LLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIV  218 (836)
Q Consensus       140 ~~~~~ia~~~~l~p-~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~  218 (836)
                      |++..+++.++++| +.+++.++++++..+.    .++++|++++.||++++.++++|+|+.+++.|+++++++++||++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~  147 (273)
T TIGR00932        72 KAAFGVGVLQVLVPGVLLGLLLGHLLGLALG----AAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIA  147 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHH
Confidence            99999999999999 6677767776654333    579999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhhcccc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 003256          219 GLLRLL-MAPLSKAKY-R-SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMR  295 (836)
Q Consensus       219 ~~~ll~-~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G  295 (836)
                      +++++. ......+.. + ....+.+...+++.++.+++.++...|+.++.++.++ +|.+...++.+++.+++++|.+|
T Consensus       148 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~g  226 (273)
T TIGR00932       148 VVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLG  226 (273)
T ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhC
Confidence            999988 665543221 1 2233444445555666677888999999998776433 57888889999999999999999


Q ss_pred             hhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 003256          296 VNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQID  344 (836)
Q Consensus       296 ~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~id  344 (836)
                      .|+++|||++|+++++. +.++++.++++++. ++|.|+||+++|+++|
T Consensus       227 ~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~  273 (273)
T TIGR00932       227 LSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD  273 (273)
T ss_pred             CcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence            99999999999999997 56788999999998 9999999999999986

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8e-33  Score=280.92  Aligned_cols=377  Identities=19%  Similarity=0.275  Sum_probs=305.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHH
Q 003256           45 SSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVF  124 (836)
Q Consensus        45 ~~~l~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF  124 (836)
                      +++.|+ +..+..-+.++++++.+..|+++|+.+||+++|++.||.--|...+          ......++++|++++||
T Consensus         2 ~h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad----------~~La~~LAelGViLLmF   70 (408)
T COG4651           2 HHDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVAD----------QTLAPELAELGVILLMF   70 (408)
T ss_pred             CCCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccc----------hhHHHHHHHhhHHHHHH
Confidence            344553 4455566778899999999999999999999999999976665432          34455899999999999


Q ss_pred             HhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChh
Q 003256          125 INTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSEL  204 (836)
Q Consensus       125 ~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~  204 (836)
                      -+|+++.++++...+..++.-++.++.+...+|.++++.+++.+.    ..+++|.++|..|+.|+.+.|+|.++.+++.
T Consensus        71 gvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~~----~glvfGlaLS~aSTVvllraLqEr~lidt~r  146 (408)
T COG4651          71 GVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSFG----TGIVFGLALSVASTVVLLRALEERQLIDTQR  146 (408)
T ss_pred             hcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCcc----cceeeeehhhhHHHHHHHHHHHHhccccccC
Confidence            999999999998777666667777787788888888888876655    4699999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHhhcc--cc--h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCch
Q 003256          205 GQLAISSALLHEIVGLLRLL-MAPLSKA--KY--R-----SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKD  274 (836)
Q Consensus       205 g~l~ls~a~v~Di~~~~ll~-~~~~~~~--~~--~-----~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e  274 (836)
                      ||++++.-+++|+..++.+. ..++++-  ..  .     ....+...+...|..++.++.|++..|+..+.... ..+|
T Consensus       147 G~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrE  225 (408)
T COG4651         147 GRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRE  225 (408)
T ss_pred             ceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHH
Confidence            99999999999999988877 5444321  11  1     12234566788899999999999999999987432 2478


Q ss_pred             HHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH
Q 003256          275 FYIVAILTGALVMAVA-CDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRA  353 (836)
Q Consensus       275 ~~~~~il~~~l~~~~i-ae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~  353 (836)
                      .+...++++++..++- ++.+|++..+|||++|+++.+. ..+++..+..-++ .+.|.-+||+++||..|+..+. .+.
T Consensus       226 lf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~-~~p  302 (408)
T COG4651         226 LFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILI-QQP  302 (408)
T ss_pred             HHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhh-cch
Confidence            8999999999877755 5789999999999999999988 6777766665555 7889999999999999998775 234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHH
Q 003256          354 FAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVT  433 (836)
Q Consensus       354 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~  433 (836)
                      +. +...+.+..++|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++++.-- -++++.-+.+++..
T Consensus       303 l~-vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr-~LvlagailsIl~n  380 (408)
T COG4651         303 LA-VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGR-DLVLAGAILSILLN  380 (408)
T ss_pred             HH-HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHH-HHHHHHHHHHHHHh
Confidence            43 33444556789999999999999999999999999999999999999999999999985444 44555555588888


Q ss_pred             HHHHHhccc
Q 003256          434 PLISVYYNP  442 (836)
Q Consensus       434 plv~~l~~p  442 (836)
                      |+.....++
T Consensus       381 Pllf~~~dr  389 (408)
T COG4651         381 PLLFALLDR  389 (408)
T ss_pred             HHHHHHHHH
Confidence            887765543

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=99.96  E-value=1.4e-26  Score=269.59  Aligned_cols=366  Identities=12%  Similarity=0.108  Sum_probs=259.8

Q ss_pred             ccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhc-ccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHH
Q 003256           37 INLDEEAVSSVLPVVMLQVSLAFSISQILYILLR-PLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAAS  115 (836)
Q Consensus        37 i~~~~~pl~~~l~~~llqi~lil~~s~l~~~ll~-rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~  115 (836)
                      .|..-++-+.++.  ++.++..+++..++..+++ |+.+|..+.++++|+++||++++.++.. ++  .......++ ++
T Consensus         2 ~w~~l~~~~~~l~--~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~-~~--g~~d~i~le-It   75 (810)
T TIGR00844         2 IWEQLEVTKAHVA--YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPL-SW--GNTDSITLE-IS   75 (810)
T ss_pred             CcccccccchhhH--HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChh-hc--ccchHHHHH-HH
Confidence            3666666666663  3333444444445555555 9999999999999999999988864311 00  001223444 99


Q ss_pred             HHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHH
Q 003256          116 TIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAIS  195 (836)
Q Consensus       116 ~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~  195 (836)
                      ++++++.+|.+|++++.+.+++.++..+.+.+.++.+.+++++++++++...+.  +..++++|+++++|++.....+++
T Consensus        76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~--~~~ALLLGAILAPTDPVLAssV~k  153 (810)
T TIGR00844        76 RILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLN--FPASLLMGACITATDPVLAQSVVS  153 (810)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhhhcCCcHHHHHHHHh
Confidence            999999999999999999999999999999999999999998888876632222  235799999999999776777766


Q ss_pred             ---hccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhc--ccc-h--hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          196 ---ELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLSK--AKY-R--SV-AIRIELSLCAMSLFTFLVLWPTIQWIIRR  265 (836)
Q Consensus       196 ---el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~--~~~-~--~~-~~~~~~~~v~~~~~~~~v~r~~~~~i~~r  265 (836)
                         ..+ ++.++..++.+++.+||.++++++. .+.+..  +.. .  .. .+..++..++++++++++++.+..|++++
T Consensus       154 g~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~  232 (810)
T TIGR00844       154 GTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRF  232 (810)
T ss_pred             cccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               233 5788999999999999999998776 433321  111 1  11 12233333444444555555555555544


Q ss_pred             cCCCCC-CchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhh-HHHHHHHHHHHHHHHHHHHHhhccc
Q 003256          266 IPERKP-VKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSA-LVEKSEAILSNFFLPFFYIHVGQQI  343 (836)
Q Consensus       266 ~~~~~~-~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~-l~~kl~~~~~~~flPlFF~~~Gl~i  343 (836)
                      ..+... ..+.++.+.++++++++.+++.+|.++++++|++|+++.+...+.++ -...+......++..++|+++|+.+
T Consensus       233 l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L  312 (810)
T TIGR00844       233 AEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSIL  312 (810)
T ss_pred             HHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            322111 13556777788888889999999999999999999999987443322 2233555667789999999999999


Q ss_pred             cccccch----hhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhhhhhhHHHHHHhhhhhccc
Q 003256          344 DIYSINN----WRAFAALELIIMAAYIGKVVASILATTCF--RTSFRNALLFSCFVNIKGVSELVTFLRWRQREL  412 (836)
Q Consensus       344 dl~~l~~----~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~real~lg~~m~~rG~v~l~~~~~~~~~~i  412 (836)
                      ....+..    ...|..+++.+++.++.|+.++++...+.  ..+|+|++++|| .++||..++.++.++++.+.
T Consensus       313 ~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~  386 (810)
T TIGR00844       313 PWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE  386 (810)
T ss_pred             CHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence            8766541    13455555666677788988888764443  468999999999 69999999999999977654

This model is specific for the fungal members of this family.

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=99.95  E-value=9.1e-26  Score=262.40  Aligned_cols=366  Identities=11%  Similarity=0.085  Sum_probs=257.6

Q ss_pred             HHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchh
Q 003256           56 SLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMI  135 (836)
Q Consensus        56 ~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l  135 (836)
                      ..+++++.....+++|+++|.+++++++|+++||..++..       ++.+ .   +.+..+++.+++|..|+++|++.+
T Consensus         4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~-------~~~~-~---~~~~~~~Lp~lLF~~g~~~~~~~l   72 (525)
T TIGR00831         4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPE-------VPLD-R---EIVLFLFLPPLLFEAAMNTDLREL   72 (525)
T ss_pred             HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCC-------CCCC-H---HHHHHHHHHHHHHHHHhcCCHHHH
Confidence            3445555667788999999999999999999998644321       0111 1   234558999999999999999999


Q ss_pred             hhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHHH
Q 003256          136 PRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLH  215 (836)
Q Consensus       136 ~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~  215 (836)
                      +++++....+++.++++|++++....+++.. +.  +..++++|+++|+||++++.+++++.+ .++++.+++.+++.+|
T Consensus        73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~~-l~--~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllN  148 (525)
T TIGR00831        73 RENFRPIALIAFLLVVVTTVVVGFSLNWILG-IP--LALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLN  148 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc--HHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhc
Confidence            9999999999999999999987766655321 11  235799999999999999999999988 5788999999999999


Q ss_pred             HHHHHHHHH-HHHhhcccc--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHH
Q 003256          216 EIVGLLRLL-MAPLSKAKY--R-SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVAC  291 (836)
Q Consensus       216 Di~~~~ll~-~~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~~~~ia  291 (836)
                      |..+++++. ...+..+.+  + ......++..++.++++++++..+..|+.++..+.   +.....+++++.+++++++
T Consensus       149 D~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~lA  225 (525)
T TIGR00831       149 DGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFLLA  225 (525)
T ss_pred             chHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHH
Confidence            999999998 665553211  2 22333333444445555666666677777553322   3456778888899999999


Q ss_pred             HHhchhHHHHHHHHHhhccCCCCc-h--hh---HHHHHHHHHHHHHHHHHHHHhhccccccccchhh----H-----HHH
Q 003256          292 DSMRVNYTIGAAMLGIVIPAGPPL-G--SA---LVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWR----A-----FAA  356 (836)
Q Consensus       292 e~~G~~~~lGaf~aGl~i~~~~~~-~--~~---l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~----~-----~~~  356 (836)
                      |.+|.|+++++|++|+++++..+. .  .+   ..+.+-.....++.+++|+++|+++.......+.    .     +..
T Consensus       226 e~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~  305 (525)
T TIGR00831       226 ERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILAL  305 (525)
T ss_pred             HHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence            999999999999999999986433 1  11   1223444567889999999999998642111000    0     100


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHH--hh-----cCCChHHHHHHHHHhhhhhhHHHHHHhhhh-h---------ccccchh
Q 003256          357 ---LELIIMAAYIGKVVASILAT--TC-----FRTSFRNALLFSCFVNIKGVSELVTFLRWR-Q---------RELIDVQ  416 (836)
Q Consensus       357 ---~~~ii~~~~~~K~~~~~l~~--~~-----~~~~~real~lg~~m~~rG~v~l~~~~~~~-~---------~~ii~~~  416 (836)
                         .+++.......|++.++...  ++     .+++||+.+.++| .+.||.++++++...- .         ...+-.-
T Consensus       306 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~  384 (525)
T TIGR00831       306 FTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFL  384 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHH
Confidence               11122223345554433321  11     2478999999999 5899999999876321 1         1233345


Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhc
Q 003256          417 TYSVLVLTNLAVTAIVTPLISVYY  440 (836)
Q Consensus       417 ~~~~~vl~~lv~t~i~~plv~~l~  440 (836)
                      ++.++++++++++...||+++++-
T Consensus       385 ~~~vVl~TllvqG~tlp~l~r~l~  408 (525)
T TIGR00831       385 AAGVILFSLLVQGISLPIFVKRKF  408 (525)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhcC
Confidence            567778888888888888888865

This model is specific for the bacterial members of this family.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.3e-22  Score=229.80  Aligned_cols=376  Identities=15%  Similarity=0.154  Sum_probs=286.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhc
Q 003256           50 VVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVK  129 (836)
Q Consensus        50 ~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle  129 (836)
                      ..++++.+++.++.+...+.+|+..|.++.+++.|++.||.+++..+.        .....-+.+..+++..++|..|++
T Consensus         6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~   77 (429)
T COG0025           6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE   77 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence            357788889899999999999999999999999999999988876431        011122233389999999999999


Q ss_pred             cCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHH
Q 003256          130 MDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAI  209 (836)
Q Consensus       130 ~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~l  209 (836)
                      +|.+.++++++....++..+++++++......+++...+.  ...++.+|+++|+|++.++.+++++.+ .+.++.++..
T Consensus        78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~--~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~  154 (429)
T COG0025          78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIP--LAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILE  154 (429)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh--HHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHH
Confidence            9999999999999999999999999887777777743222  335799999999999999999999977 6899999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHhhcccch---hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 003256          210 SSALLHEIVGLLRLL-MAPLSKAKYR---SVAIRIEL----SLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAIL  281 (836)
Q Consensus       210 s~a~v~Di~~~~ll~-~~~~~~~~~~---~~~~~~~~----~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il  281 (836)
                      +++.+||..+++++. ......+.+.   ......++    ..++.+++.+++.+++++++.+|..  . .......+.+
T Consensus       155 gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~--~-~~~~~~~i~L  231 (429)
T COG0025         155 GESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGW--T-SPLLETLLTL  231 (429)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--c-chHHHHHHHH
Confidence            999999999999998 6655432221   22222333    3333444444555555555444421  1 1456778888


Q ss_pred             HHHHHHHHHHHHhchhHHHHHHHHHhhcc---C--CCCch-hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Q 003256          282 TGALVMAVACDSMRVNYTIGAAMLGIVIP---A--GPPLG-SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFA  355 (836)
Q Consensus       282 ~~~l~~~~iae~~G~~~~lGaf~aGl~i~---~--~~~~~-~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~  355 (836)
                      ...+..+.++|.+|.+++++.+++|++..   .  ..+.. +...+.+......++.-+.|+..|++++...+. ...+.
T Consensus       232 ~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~-~~~~~  310 (429)
T COG0025         232 LLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL-ALGLL  310 (429)
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HhhHH
Confidence            99999999999999999999999999774   1  11111 233344555667889999999999999988775 23355


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC------CChHHHHHHHHHhhhhhhHHHHHHhhhhh------ccccchhhHHHHHH
Q 003256          356 ALELIIMAAYIGKVVASILATTCFR------TSFRNALLFSCFVNIKGVSELVTFLRWRQ------RELIDVQTYSVLVL  423 (836)
Q Consensus       356 ~~~~ii~~~~~~K~~~~~l~~~~~~------~~~real~lg~~m~~rG~v~l~~~~~~~~------~~ii~~~~~~~~vl  423 (836)
                      ..+++++..+++|++++++..+..+      .+++|++.++|. ++||.++++++.....      ...+-.-.+.+++.
T Consensus       311 ~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~  389 (429)
T COG0025         311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIPLELPGPARELILFIVFLVILF  389 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHH
Confidence            5667777888999999999988743      799999999994 9999999999887542      22444456777778


Q ss_pred             HHHHHHHhHHHHHHHhcc
Q 003256          424 TNLAVTAIVTPLISVYYN  441 (836)
Q Consensus       424 ~~lv~t~i~~plv~~l~~  441 (836)
                      ++++.+...+|+.+++..
T Consensus       390 Sl~v~g~t~~~l~~~~~~  407 (429)
T COG0025         390 SLLVQGLTLPPLAKKLEV  407 (429)
T ss_pred             HHHHHhhhHHHHHHHhcc
Confidence            888888888888887664

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=99.90  E-value=4.3e-22  Score=212.32  Aligned_cols=372  Identities=12%  Similarity=0.124  Sum_probs=295.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhh
Q 003256           48 LPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINT  127 (836)
Q Consensus        48 l~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~G  127 (836)
                      ...+++.-.+++.++.+.+.+..|+|.|..+-.+..|++.|.-++|.++.        ++.+....++++++++++|..|
T Consensus         5 ~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdgG   76 (574)
T COG3263           5 INLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDGG   76 (574)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcCc
Confidence            33455555578888999999999999999999999999999999987652        2457778899999999999999


Q ss_pred             hccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHh-hccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHH
Q 003256          128 VKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHRE-QYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQ  206 (836)
Q Consensus       128 le~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l-~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~  206 (836)
                      +..+++.+|...++++.++..|++++-.+....++++ ...|.    +++++|+++..|+.+.+..+|.+.+ +|.+++.
T Consensus        77 ~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wl----e~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~s  151 (574)
T COG3263          77 FGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWL----EGLLIGAIVGSTDAAAVFSLLGGKN-LNERVAS  151 (574)
T ss_pred             cCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHH----HHHHHHHhhccccHHHHHHHHccCC-hhhhhhh
Confidence            9999999999999999999999998887765555544 44443    6799999999999999999998887 5889999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhccc-ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 003256          207 LAISSALLHEIVGLLRLL-MAPLSKAK-YR--SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILT  282 (836)
Q Consensus       207 l~ls~a~v~Di~~~~ll~-~~~~~~~~-~~--~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~  282 (836)
                      +..-++--||.+++++.. ++.+...+ ++  +..+..++.-+++.++.++....+..|+++|..-+   +..+..++++
T Consensus       152 tLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~la  228 (574)
T COG3263         152 TLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILALA  228 (574)
T ss_pred             hEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHHHH
Confidence            999999999999998887 65554333 32  33333455667788888899999999999997332   5678889999


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch-hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 003256          283 GALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG-SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELII  361 (836)
Q Consensus       283 ~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~-~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii  361 (836)
                      ..+....+++.+|.|++++.+++|+++.|.+-.. +.+.+-.+-+ .++..-+.|...|+..+++.+. ......+.+.+
T Consensus       229 ~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~-~iavPailL~l  306 (574)
T COG3263         229 GGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLL-PIAIPAILLSL  306 (574)
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhh-HhhHHHHHHHH
Confidence            9999999999999999999999999999984333 3445555555 6777778899999999998876 23344455556


Q ss_pred             HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccc-----hhhHHHHHHHHHHHHHhHHHHH
Q 003256          362 MAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELID-----VQTYSVLVLTNLAVTAIVTPLI  436 (836)
Q Consensus       362 ~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~-----~~~~~~~vl~~lv~t~i~~plv  436 (836)
                      ...+++|.+++|+...-++.+++|.++++| -+-||.++++++....-.|.-+     +-.|-++.++.+++....+|..
T Consensus       307 ~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~~~a  385 (574)
T COG3263         307 WMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPWAA  385 (574)
T ss_pred             HHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcchHHH
Confidence            677889999999999999999999999999 4899999999999876655433     3334444455555544455554


Q ss_pred             HH
Q 003256          437 SV  438 (836)
Q Consensus       437 ~~  438 (836)
                      ++
T Consensus       386 ~~  387 (574)
T COG3263         386 KK  387 (574)
T ss_pred             Hh
Confidence            43

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=99.90  E-value=1.8e-21  Score=226.26  Aligned_cols=366  Identities=12%  Similarity=0.103  Sum_probs=255.5

Q ss_pred             HHHHHHHh-ccc-CCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhcc
Q 003256           62 SQILYILL-RPL-KQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTI  139 (836)
Q Consensus        62 s~l~~~ll-~rl-~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~  139 (836)
                      +.+...+. |+. ++|..+..++.|+++|+...+... ....-+.      -+.+-.+.+..++|..|+++|.+.++++.
T Consensus        21 ~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~-~~~~~l~------~~lf~~~~LPpIlFe~g~~l~~~~f~~n~   93 (559)
T TIGR00840        21 AKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH-IDPPTLD------SSYFFLYLLPPIVLDAGYFMPQRNFFENL   93 (559)
T ss_pred             HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC-CccCCcC------HHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            33333333 344 499999999999999986433210 0000111      23455577889999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhcc--c---cccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHH
Q 003256          140 KKTYSVSLTVFIVPLLISLLVGHREQYK--I---PRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALL  214 (836)
Q Consensus       140 ~~~~~ia~~~~l~p~~lg~~~~~~l~~~--~---~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v  214 (836)
                      +..+.+++.+++++.++.....+++...  .   ..++..++++|+++|+|++.++..++++.+ .+.++..++.+++++
T Consensus        94 ~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESll  172 (559)
T TIGR00840        94 GSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLL  172 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhh
Confidence            9999999999999988766655543211  1   112335799999999999999999999998 588999999999999


Q ss_pred             HHHHHHHHHH-HHHhhcc--cc-hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHH
Q 003256          215 HEIVGLLRLL-MAPLSKA--KY-RSV----AIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALV  286 (836)
Q Consensus       215 ~Di~~~~ll~-~~~~~~~--~~-~~~----~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~  286 (836)
                      ||.++++++. +..+...  +. ...    .+..++...+..++++++++.+..++.++....   +.....+++++.++
T Consensus       173 NDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~~l~l~~~yl  249 (559)
T TIGR00840       173 NDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEPLFVFLISYL  249 (559)
T ss_pred             hccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHH
Confidence            9999999998 6655421  11 111    111111112235566667777777777776432   24566777888889


Q ss_pred             HHHHHHHhchhHHHHHHHHHhhccCCC--Cchh---hHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 003256          287 MAVACDSMRVNYTIGAAMLGIVIPAGP--PLGS---ALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELII  361 (836)
Q Consensus       287 ~~~iae~~G~~~~lGaf~aGl~i~~~~--~~~~---~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii  361 (836)
                      +++++|.+|.|++++.+++|+++.+..  ...+   .-.+.+......++..+.|+++|+.+.... ..+ .|...++.+
T Consensus       250 ~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~~~-~~~~i~~~l  327 (559)
T TIGR00840       250 SYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-HEW-NWAFVVATL  327 (559)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hhH-HHHHHHHHH
Confidence            999999999999999999999996531  1222   223334445577888999999999763221 112 344444445


Q ss_pred             HHHHHHHHHHHHHHHhh------cCCChHHHHHHHHHhhhhhhHHHHHHhhhhhc-----cccchhhHHHHHHHHHHHHH
Q 003256          362 MAAYIGKVVASILATTC------FRTSFRNALLFSCFVNIKGVSELVTFLRWRQR-----ELIDVQTYSVLVLTNLAVTA  430 (836)
Q Consensus       362 ~~~~~~K~~~~~l~~~~------~~~~~real~lg~~m~~rG~v~l~~~~~~~~~-----~ii~~~~~~~~vl~~lv~t~  430 (836)
                      ++.++.|+++++..+..      .+.+++|.+.++| .+.||.++++++....+.     +.+-..++.++++++++++.
T Consensus       328 ~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~  406 (559)
T TIGR00840       328 SFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGG  406 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHh
Confidence            56678899888876543      3579999999999 589999999988754332     23334455566677788888


Q ss_pred             hHHHHHHHhcc
Q 003256          431 IVTPLISVYYN  441 (836)
Q Consensus       431 i~~plv~~l~~  441 (836)
                      .++|+++++.-
T Consensus       407 T~~pl~~~L~l  417 (559)
T TIGR00840       407 TIKPLVEVLKV  417 (559)
T ss_pred             hHHHHHHHhCC
Confidence            88999988753

This model is specific for the eukaryotic members members of this family.

>PRK11175 universal stress protein UspE; Provisional

Probab=99.83  E-value=1.3e-19  Score=198.07  Aligned_cols=272  Identities=10%  Similarity=0.019  Sum_probs=173.3

Q ss_pred             eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhccccccc-cc-ccCchHH-HHHHHHHHhhcC
Q 003256          464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKT-KA-MANSTDH-IMRAVIKYAEGS  540 (836)
Q Consensus       464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~-~~-~~~~~~~-i~~af~~~~~~~  540 (836)
                      |||+|++.++.....++.+..++...  ..+++++|+++......+........+. .. .....++ +.+..+.+.   
T Consensus         5 ~ILv~~D~s~~~~~al~~a~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---   79 (305)
T PRK11175          5 NILVVIDPNQDDQPALRRAVYLAQRN--GGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYL---   79 (305)
T ss_pred             eEEEEcCCCccccHHHHHHHHHHHhc--CCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            79999999999999999988887443  4678999987533211111100000000 00 0001111 222222222   


Q ss_pred             CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCC
Q 003256          541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSN  620 (836)
Q Consensus       541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~  620 (836)
                      ..++.++.....  .++.++.|++.|+++++||||||+|++++.   ++..+|++.+++++++||||.++. .+..    
T Consensus        80 ~~~~~~~~~v~~--~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~---~~~~~gs~~~~l~~~~~~pvlvv~-~~~~----  149 (305)
T PRK11175         80 DAGIPIEIKVVW--HNRPFEAIIQEVIAGGHDLVVKMTHQHDKL---ESVIFTPTDWHLLRKCPCPVLMVK-DQDW----  149 (305)
T ss_pred             hcCCceEEEEec--CCCcHHHHHHHHHhcCCCEEEEeCCCCcHH---HhhccChhHHHHHhcCCCCEEEec-cccc----
Confidence            234555554432  357899999999999999999999987543   445889999999999999997643 3211    


Q ss_pred             CCCCCCcccEEEEEccCCcch-------HHHHHHHHHhhcCC-CeEEEEEEEeecCCc---------ccchhhhh---hH
Q 003256          621 SAKPANFCYNVAVFFIGGPDD-------REAMALVSHMSSNP-GVRITLSRIYLEENL---------VEEEDDKC---LD  680 (836)
Q Consensus       621 ~~~~~~~~~~I~v~f~Gg~dd-------reAL~~A~rmA~~~-~~~Ltvvrv~~~~~~---------~~~~~e~~---~d  680 (836)
                           ...++|+++.+|++.+       +.|+++|.++|+.. +++++++|+.+....         ..++.++.   ..
T Consensus       150 -----~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (305)
T PRK11175        150 -----PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQH  224 (305)
T ss_pred             -----CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHH
Confidence                 1246999999998753       67999999999987 999999999763211         01111111   12


Q ss_pred             HHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhcc
Q 003256          681 EVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASA  759 (836)
Q Consensus       681 ~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~  759 (836)
                      ++.++++.++...  .  ..+..+..|.....+++.. ..++||+|||++++.      |+.+|    -+|..++.++. 
T Consensus       225 ~~~l~~~~~~~~~--~--~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~------~~~~~----llGS~a~~v~~-  289 (305)
T PRK11175        225 LLAMKALRQKFGI--D--EEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRT------GLSAA----FLGNTAEHVID-  289 (305)
T ss_pred             HHHHHHHHHHhCC--C--hhheeeccCCHHHHHHHHHHHhCCCEEEECCCccC------CCcce----eecchHHHHHh-
Confidence            2345555544311  1  1112233343222222222 267999999999887      88776    79999999996 


Q ss_pred             CCCCCcceEEEEee
Q 003256          760 DFAEGMVSVLVIQS  773 (836)
Q Consensus       760 d~~~~~~SvLvvqq  773 (836)
                         .++++||||+.
T Consensus       290 ---~~~~pVLvv~~  300 (305)
T PRK11175        290 ---HLNCDLLAIKP  300 (305)
T ss_pred             ---cCCCCEEEEcC
Confidence               58899999974

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=99.74  E-value=4.2e-16  Score=161.42  Aligned_cols=348  Identities=13%  Similarity=0.111  Sum_probs=244.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccC
Q 003256           52 MLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMD  131 (836)
Q Consensus        52 llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d  131 (836)
                      ...-+.+.+++..--.+=+++-+...+--.+.|+++||++++....+. +   .+.......++.+-+..-.|.++.|+.
T Consensus        16 ~~~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~-w---gn~d~it~ei~RvvLcvqvfava~eLP   91 (467)
T KOG4505|consen   16 AASGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS-W---GNKDYITYEISRVVLCVQVFAVAMELP   91 (467)
T ss_pred             HHHhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc-c---cCcchhhhhhhhhhHhHHHHHHHHhcc
Confidence            333344455555555555677777777778999999999988743210 0   112345556888889999999999999


Q ss_pred             cchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccc---cCChhHHHH
Q 003256          132 KGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKL---LNSELGQLA  208 (836)
Q Consensus       132 ~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l---~~s~~g~l~  208 (836)
                      -..+.++++..+.+-+.-++.-+++.++..|.+.+...  ...++.++++++.|++.....+..+-+.   .+.++..+.
T Consensus        92 r~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~ln--f~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL  169 (467)
T KOG4505|consen   92 RAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNLN--FLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLL  169 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHH
Confidence            99999999998887777777777777777776654443  2246999999999996666666655433   455677789


Q ss_pred             HHHHHHHHHHHHHHHH-HHHhhc-ccc---h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHH
Q 003256          209 ISSALLHEIVGLLRLL-MAPLSK-AKY---R-----SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIV  278 (836)
Q Consensus       209 ls~a~v~Di~~~~ll~-~~~~~~-~~~---~-----~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~  278 (836)
                      .+++-.||.+++.++. .+-+.. ...   .     ...+......++++.+++++.|..+.+..++.--+   .|+++.
T Consensus       170 ~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~  246 (467)
T KOG4505|consen  170 AAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLI  246 (467)
T ss_pred             HHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHH
Confidence            9999999999998887 444322 111   1     12223333344456666667676666665553322   588999


Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhH-HHHHHHHHHHHHHHHHHHHhhccccccccchh----hH
Q 003256          279 AILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSAL-VEKSEAILSNFFLPFFYIHVGQQIDIYSINNW----RA  353 (836)
Q Consensus       279 ~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l-~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~----~~  353 (836)
                      +-+++++.++.+.+.+|.+-.+-.|.||++++.+..+.++. ..++..+.+.++.-.||++.|..++++.++..    ..
T Consensus       247 ~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~v  326 (467)
T KOG4505|consen  247 FYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPV  326 (467)
T ss_pred             HHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchH
Confidence            99999999999999999999999999999999887666543 44677788888999999999999999887622    24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 003256          354 FAALELIIMAAYIGKVVASILATTCF--RTSFRNALLFSCFVNIKGVSELVTFLRWRQ  409 (836)
Q Consensus       354 ~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~real~lg~~m~~rG~v~l~~~~~~~~  409 (836)
                      |-.+++-+.+.+.-|+-++++.-.+.  =.+|||++++|. .+|.|.-++..+..+..
T Consensus       327 wrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~  383 (467)
T KOG4505|consen  327 WRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK  383 (467)
T ss_pred             HHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence            43333333333334554444432211  137999999999 69999999888877653

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.72  E-value=7.1e-15  Score=162.62  Aligned_cols=300  Identities=13%  Similarity=0.185  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256          110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS  183 (836)
Q Consensus       110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls  183 (836)
                      ....+.+.-..+|.|.+|+|+..+.+.   ++.|++   ..-++.|+++|.++-..    +.....   ...--+|+ -+
T Consensus        62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~----~n~~~~---~~~~GW~I-p~  133 (423)
T PRK14853         62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVA----VNLAGG---GALRGWAI-PT  133 (423)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHH----HhCCch---hhhhhhhh-hh
Confidence            445566677788999999999664432   222333   35677888888854332    211111   01122332 35


Q ss_pred             cccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          184 KCAYPVLVDAISELKL-LNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW  261 (836)
Q Consensus       184 ~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~  261 (836)
                      .||.+....+|..+|. .++.++...++.|++||+.++++++ +++   ++  ....+.......+  ++.        |
T Consensus       134 ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt---~~--i~~~~L~~a~~~~--~~l--------~  198 (423)
T PRK14853        134 ATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT---SE--LNLEALLLALVPL--ALF--------W  198 (423)
T ss_pred             hhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC---CC--CCHHHHHHHHHHH--HHH--------H
Confidence            5888888999999874 4889999999999999999999998 662   11  1222222222111  111        2


Q ss_pred             HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-----------CchhhHHHHHHHHHHHH
Q 003256          262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP-----------PLGSALVEKSEAILSNF  330 (836)
Q Consensus       262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~-----------~~~~~l~~kl~~~~~~~  330 (836)
                      +.+|.    ++++.+.++++.  +++.+..+..|+|+.+|+|++|+++|..+           +..+++++++++++..+
T Consensus       199 ~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~  272 (423)
T PRK14853        199 LLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGV  272 (423)
T ss_pred             HHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHH
Confidence            22332    234456666553  36677889999999999999999999521           22467999999999999


Q ss_pred             HHHHH-HHHhhccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhh
Q 003256          331 FLPFF-YIHVGQQIDI-YSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGV  398 (836)
Q Consensus       331 flPlF-F~~~Gl~idl-~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~  398 (836)
                      ++|+| |+..|.++|. ..+.+...-.....+++..++||.+|.+..++..          +++|++-..+|++-+.-=+
T Consensus       273 ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFT  352 (423)
T PRK14853        273 AVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFT  352 (423)
T ss_pred             HHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            99999 9999999986 4341111112455667777889999988877653          4689999999997667778


Q ss_pred             HHHHHHhhhhh-cc-ccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 003256          399 SELVTFLRWRQ-RE-LIDVQTYSVLVLTNLAVTAIVTPLISVY  439 (836)
Q Consensus       399 v~l~~~~~~~~-~~-ii~~~~~~~~vl~~lv~t~i~~plv~~l  439 (836)
                      +++-+++.+++ .. .++..-..+ .+..+++.++.--+++..
T Consensus       353 mSlFI~~LAf~~~~~~~~~aKigi-l~~S~~s~~~G~~~l~~~  394 (423)
T PRK14853        353 VSLLIGELAFGGGSARDDAVKVGV-LTGSLIAALLASVLLRLR  394 (423)
T ss_pred             HHHHHHHhhcCCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            89999999994 22 333333333 344444333333344433

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=99.69  E-value=1.7e-15  Score=169.82  Aligned_cols=381  Identities=13%  Similarity=0.070  Sum_probs=254.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcccC---CChhHHHHhhhceecccccccccccc-----ccccCCCchHHHHHHHHHHHHHHH
Q 003256           52 MLQVSLAFSISQILYILLRPLK---QPKFVSNTLSGIILGPSFLGRIKMFD-----AYVTGGRGMVFAQAASTIGGIYFV  123 (836)
Q Consensus        52 llqi~lil~~s~l~~~ll~rl~---~P~iv~~IlaGillGPs~Lg~~~~~~-----~~lfp~~~~~~l~~l~~iGl~~ll  123 (836)
                      ++-+.+++.++.+.++++++.|   +|.-+.-++.|+++|-..........     .+.|.+      +.+-.+-+--+.
T Consensus        37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpii  110 (575)
T KOG1965|consen   37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPII  110 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchhh
Confidence            4444556677888899999888   99999999999999964322211111     112221      122234445578


Q ss_pred             HHhhhccCcchhhhccchhhHHHHHHHHHHHH-HHHHHHHHhhccccc--cchHHHHHHHhhccccHHHHHHHHHhcccc
Q 003256          124 FINTVKMDKGMIPRTIKKTYSVSLTVFIVPLL-ISLLVGHREQYKIPR--IHDQGISISFVASKCAYPVLVDAISELKLL  200 (836)
Q Consensus       124 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~-lg~~~~~~l~~~~~~--~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~  200 (836)
                      |..|.+++.+.++++......+++.|..++.. +|.++.++.......  +...++++|+++|.|++..+..++.|++ .
T Consensus       111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-v  189 (575)
T KOG1965|consen  111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-V  189 (575)
T ss_pred             hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-C
Confidence            99999999999999999999999988777654 555554443211111  1234699999999999999999999999 5


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccch-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchH
Q 003256          201 NSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYR-S---VAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDF  275 (836)
Q Consensus       201 ~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~-~---~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~  275 (836)
                      ...+-.++-+++++||.++++++. +........+ +   ..+..++........++...+.+-..+.++..-+ +....
T Consensus       190 d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~-~~~~l  268 (575)
T KOG1965|consen  190 DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLR-RTPSL  268 (575)
T ss_pred             CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHH
Confidence            788999999999999999999998 7665543322 1   1222222222222223333333344444444332 22456


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-----CchhhHHHHHHHHHHHHHHHHHHHHhhcc-ccccccc
Q 003256          276 YIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP-----PLGSALVEKSEAILSNFFLPFFYIHVGQQ-IDIYSIN  349 (836)
Q Consensus       276 ~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~-----~~~~~l~~kl~~~~~~~flPlFF~~~Gl~-idl~~l~  349 (836)
                      +..+.+++....++++|.+|+++++..+++|+.+++..     +..+.-.+.+-.+...+.--+-|+++|+. ++.....
T Consensus       269 E~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~  348 (575)
T KOG1965|consen  269 ESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHV  348 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccee
Confidence            78888889999999999999999999999999998752     22233333344445667777889999963 3444333


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHHhhhhhhHHHHHHhhhh-hc-----ccc
Q 003256          350 NWRAFAALELIIMAAYIGKVVASILATTCFRT----------SFRNALLFSCFVNIKGVSELVTFLRWR-QR-----ELI  413 (836)
Q Consensus       350 ~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~----------~~real~lg~~m~~rG~v~l~~~~~~~-~~-----~ii  413 (836)
                       +....++....++.+++|.+-++-.+.+.+.          +.++-..+.|.-.-||.++++++.--. +.     +.+
T Consensus       349 -~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i  427 (575)
T KOG1965|consen  349 -YKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTI  427 (575)
T ss_pred             -eechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEE
Confidence             2222334555566678888877766665543          344445556654479999999876432 11     445


Q ss_pred             chhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 003256          414 DVQTYSVLVLTNLAVTAIVTPLISVYYN  441 (836)
Q Consensus       414 ~~~~~~~~vl~~lv~t~i~~plv~~l~~  441 (836)
                      -..+..++++++++....+.|+++++-.
T Consensus       428 ~tttl~vVlfT~lv~Gg~T~pml~~L~~  455 (575)
T KOG1965|consen  428 FTTTLVVVLFTVLVFGGSTKPMLSYLMI  455 (575)
T ss_pred             EEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence            5566667777777878889999998863

>TIGR00773 NhaA Na+/H+ antiporter NhaA

Probab=99.49  E-value=2.5e-12  Score=139.88  Aligned_cols=270  Identities=13%  Similarity=0.144  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256          110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS  183 (836)
Q Consensus       110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls  183 (836)
                      ....+.+.-..+|.|.+|+|++.+.+.   ++.||+   ..-++.|+++|.++=..+..  +...     ..--+|+-+ 
T Consensus        52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~-----~~~GW~IP~-  123 (373)
T TIGR00773        52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPI-----TREGWAIPA-  123 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCc-----ccCcccccc-
Confidence            445566677788999999999876653   233443   34567788888754222111  1000     011122222 


Q ss_pred             cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW  261 (836)
Q Consensus       184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~  261 (836)
                      .|+.+....++.=+| ..+..+....++-|++||+.++++++ +++-     +....+......++.+          .+
T Consensus       124 ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt~-----~i~~~~L~~a~~~~~~----------l~  188 (373)
T TIGR00773       124 ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYTN-----DLSMAALLVAAVAIAV----------LA  188 (373)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecCC-----CCCHHHHHHHHHHHHH----------HH
Confidence            233232233333222 25667788999999999999998888 6532     1222333232222211          12


Q ss_pred             HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch----hhHHHHHHHHHHHHHHHHH-H
Q 003256          262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG----SALVEKSEAILSNFFLPFF-Y  336 (836)
Q Consensus       262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~----~~l~~kl~~~~~~~flPlF-F  336 (836)
                      +.+|..    +++...+..+..++ .+++ ...|+|+.+|+|++|+++|...+..    +++++.+++.+..+++|+| |
T Consensus       189 ~~~~~~----v~~~~~y~~lgvll-W~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAF  262 (373)
T TIGR00773       189 VLNRCG----VRRLGPYMLVGVIL-WFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAF  262 (373)
T ss_pred             HHHHcC----CchhhHHHHHHHHH-HHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334432    23444444443333 3333 7999999999999999999864443    3455556666889999999 9


Q ss_pred             HHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHhh
Q 003256          337 IHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELVTFLR  406 (836)
Q Consensus       337 ~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~~~~~  406 (836)
                      +..|.++|...+. .........+++..+++|.+|++..++..          +++|++-..+|++-+.-=++++-+.+.
T Consensus       263 anAGv~l~~~~~~-~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~L  341 (373)
T TIGR00773       263 ANAGVSLQGVSLN-GLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASL  341 (373)
T ss_pred             HhcCeeeecCcch-hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999875543 22223366777788899999999887653          468999999998766667889999999


Q ss_pred             hhh
Q 003256          407 WRQ  409 (836)
Q Consensus       407 ~~~  409 (836)
                      +++
T Consensus       342 Af~  344 (373)
T TIGR00773       342 AFG  344 (373)
T ss_pred             hcC
Confidence            884

These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=99.42  E-value=1.9e-12  Score=122.81  Aligned_cols=131  Identities=18%  Similarity=0.316  Sum_probs=97.7

Q ss_pred             eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCCc
Q 003256          464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDA  543 (836)
Q Consensus       464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~  543 (836)
                      |||+|++++++...+++.+..++..  .+.+++++|+++.+....+    +... .  .....++.++.+.+..+.  .+
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~~-~--~~~~~~~~~~~~~~~~~~--~g   69 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQLE-V--NVQRARKLLRQAERIAAS--LG   69 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chhH-H--HHHHHHHHHHHHHHHhhh--cC
Confidence            6999999999999999999999864  4679999999987543321    1100 0  112234555555554332  35


Q ss_pred             eeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          544 VTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       544 v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                      +.+++.+..+  +++.++||+.|++.++|+||||+|++++.   .+..+|+++++|++++||||+|+
T Consensus        70 ~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~---~~~~lGs~~~~v~~~~~~pvlvv  131 (132)
T cd01988          70 VPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSL---RDRLFGGVIDQVLESAPCDVAVV  131 (132)
T ss_pred             CceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCc---cceecCchHHHHHhcCCCCEEEe
Confidence            6677776664  47999999999999999999999988544   34489999999999999999764

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.21  E-value=3.9e-09  Score=116.89  Aligned_cols=269  Identities=15%  Similarity=0.146  Sum_probs=166.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhh
Q 003256          109 VFAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVA  182 (836)
Q Consensus       109 ~~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~l  182 (836)
                      .....+.+.-+.+|.|.+|+|+..+.+.   ++.|++   ..-++.|+++|.++=.    .+-....    ..--+|+-+
T Consensus        67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~----~~n~~~~----~~~GWgIPm  138 (438)
T PRK14856         67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYF----FLNADTP----SQHGFGIPM  138 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHh----heecCCC----ccCcccccc
Confidence            3445567777789999999999876553   233333   3456778888875422    2211100    111222222


Q ss_pred             ccccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          183 SKCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQ  260 (836)
Q Consensus       183 s~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~  260 (836)
                       .|+.+....++.=+| ..++.+....++-|++||+.++++++ +++-     +....+.....+++.++          
T Consensus       139 -ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~-----~i~~~~L~~a~~~~~~l----------  202 (438)
T PRK14856        139 -ATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYTT-----NLKFAWLLGALGVVLVL----------  202 (438)
T ss_pred             -HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCC-----CCcHHHHHHHHHHHHHH----------
Confidence             233333333443333 24667888899999999999998888 6632     12333333333222211          


Q ss_pred             HHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc-------------------------
Q 003256          261 WIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL-------------------------  315 (836)
Q Consensus       261 ~i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~-------------------------  315 (836)
                      ++.+|..    ++....++++.+  +.-+....-|+|+.++..++|+++|..++.                         
T Consensus       203 ~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (438)
T PRK14856        203 AVLNRLN----VRSLIPYLLLGV--LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTK  276 (438)
T ss_pred             HHHHHcC----CccccHHHHHHH--HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccccccccc
Confidence            2233322    233344444443  334445678999999999999999975322                         


Q ss_pred             -------------------hhhHHHHHHHHHHHHHHHHH-HHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          316 -------------------GSALVEKSEAILSNFFLPFF-YIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILA  375 (836)
Q Consensus       316 -------------------~~~l~~kl~~~~~~~flPlF-F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~  375 (836)
                                         .+++++.+++.+..+.+|+| |...|..++.....  ..-.....+++..++||.+|.+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~--~~~pv~lGI~~GLvvGK~lGI~~~  354 (438)
T PRK14856        277 EQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINL--EVDKVLLGVILGLCLGKPLGIFLI  354 (438)
T ss_pred             chhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhh--ccCcHHHHHHHHHHhcchHHHHHH
Confidence                               13455667777888999999 89999998754322  111234455566678899988887


Q ss_pred             Hhhc----------CCChHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 003256          376 TTCF----------RTSFRNALLFSCFVNIKGVSELVTFLRWRQ  409 (836)
Q Consensus       376 ~~~~----------~~~~real~lg~~m~~rG~v~l~~~~~~~~  409 (836)
                      ++..          +++|++-...|++-+.-=++++-+++.+++
T Consensus       355 s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~  398 (438)
T PRK14856        355 TFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT  398 (438)
T ss_pred             HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7653          568999999998766667889999999984

>PRK15456 universal stress protein UspG; Provisional

Probab=99.15  E-value=2.9e-10  Score=109.81  Aligned_cols=134  Identities=7%  Similarity=0.038  Sum_probs=87.9

Q ss_pred             ceeEEeecCCC--ChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchh-cccccccccccCchHHHHHHHHHHhhc
Q 003256          463 LRILCGIHDED--HISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVE-TYSTQKTKAMANSTDHIMRAVIKYAEG  539 (836)
Q Consensus       463 lriLvcv~~~~--~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~-~~~~~~~~~~~~~~~~i~~af~~~~~~  539 (836)
                      -|||+|++.++  +...+++.+..++..  . ..++++|+++..... .... ..+.+ .. .....++..+.++.+.+.
T Consensus         3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~   76 (142)
T PRK15456          3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASL-SLHRFAADVR-RF-EEHLQHEAEERLQTMVSH   76 (142)
T ss_pred             ccEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCcccc-cccccccchh-hH-HHHHHHHHHHHHHHHHHH
Confidence            37999999984  788999998888643  2 379999998754211 1100 00000 00 011112223333333322


Q ss_pred             C-CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          540 S-NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       540 ~-~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                      . ...+.++..+..   ++..+.|++.|++.++||||||.|++ +.   .+..+||+.++|++++||||.|
T Consensus        77 ~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~-~~---~~~llGS~a~~v~~~a~~pVLv  140 (142)
T PRK15456         77 FTIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNP-SI---STHLLGSNASSVIRHANLPVLV  140 (142)
T ss_pred             hCCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCC-Cc---cceecCccHHHHHHcCCCCEEE
Confidence            1 234566655544   58899999999999999999999986 32   2348999999999999999865

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=99.15  E-value=3.8e-10  Score=109.34  Aligned_cols=140  Identities=14%  Similarity=0.198  Sum_probs=90.4

Q ss_pred             eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhc--cccccc-ccccCchHHHHHHHHHHhhcC
Q 003256          464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVET--YSTQKT-KAMANSTDHIMRAVIKYAEGS  540 (836)
Q Consensus       464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~--~~~~~~-~~~~~~~~~i~~af~~~~~~~  540 (836)
                      +||+|++.+++...+++.+..++..  ...+++++|+++..... +....  ...+.. .......++.++.+.+..+  
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--   75 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSI-PSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS--   75 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            5899999999999999999887654  35789999998754221 11000  000000 0011122333333322211  


Q ss_pred             CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhh-HHHHHHhccCC--cceEEEEcCC
Q 003256          541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLH-GLNNNVLGYAP--CTVGIFVDKR  614 (836)
Q Consensus       541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~g-sv~~~Vl~~Ap--CsVgIlvdrg  614 (836)
                      ...+.++.....  ..+.++.|+++|++.++|+||||.|+++|.   .+..+| ++.++|++++|  |||.| |.+|
T Consensus        76 ~~~~~~~~~~~~--g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l---~~~~~gssva~~Vi~~a~~~c~Vlv-v~~~  146 (146)
T cd01989          76 RKGVQCEDVVLE--DDDVAKAIVEYVADHGITKLVMGASSDNHF---SMKFKKSDVASSVLKEAPDFCTVYV-VSKG  146 (146)
T ss_pred             hcCCeEEEEEEe--CCcHHHHHHHHHHHcCCCEEEEeccCCCce---eecccCCchhHHHHhcCCCCceEEE-EeCc
Confidence            234555555543  247899999999999999999999988554   233677 69999999999  99975 4443

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>PRK15005 universal stress protein F; Provisional

Probab=99.13  E-value=4.9e-10  Score=108.20  Aligned_cols=137  Identities=14%  Similarity=0.104  Sum_probs=85.4

Q ss_pred             ceeEEeecCCCC--hHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcC
Q 003256          463 LRILCGIHDEDH--ISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGS  540 (836)
Q Consensus       463 lriLvcv~~~~~--~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~  540 (836)
                      -+||+|++.+++  ...+++.+..++..  ...+++++|+++.................. .....++..+.++++.+..
T Consensus         3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~   79 (144)
T PRK15005          3 RTILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIPSLPYYASLGLAYSAELPA-MDDLKAEAKSQLEEIIKKF   79 (144)
T ss_pred             ccEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEccCcccccccccccccchH-HHHHHHHHHHHHHHHHHHh
Confidence            379999999987  46788877766643  356899999997532111110000000000 0001122223333332221


Q ss_pred             -CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          541 -NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       541 -~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                       ...+.++..+.   .++..+.|++.|++.++||||||.|+ .|.   .+..+||+.++|++++||||.|
T Consensus        80 ~~~~~~~~~~v~---~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~---~~~llGS~a~~vl~~a~cpVlv  142 (144)
T PRK15005         80 KLPTDRVHVHVE---EGSPKDRILELAKKIPADMIIIASHR-PDI---TTYLLGSNAAAVVRHAECSVLV  142 (144)
T ss_pred             CCCCCceEEEEe---CCCHHHHHHHHHHHcCCCEEEEeCCC-CCc---hheeecchHHHHHHhCCCCEEE
Confidence             12344554443   36789999999999999999999984 343   3448999999999999999865

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=99.09  E-value=1.4e-08  Score=110.91  Aligned_cols=270  Identities=12%  Similarity=0.115  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256          110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS  183 (836)
Q Consensus       110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls  183 (836)
                      ..+.+.+.-+.+|.|.+|+|+..+.+.   ++.|++   ..-++.|+++|.++=..+..  +...     ..--+|+-+ 
T Consensus        59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~-----~~~GWgIPm-  130 (389)
T PRK09560         59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPE-----TLRGWAIPA-  130 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCc-----ccCcccccc-
Confidence            344566667778999999999876553   233443   44567788888754222211  1000     011122222 


Q ss_pred             cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW  261 (836)
Q Consensus       184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~  261 (836)
                      .|+.+....++.=+| ..+..+....++-|++||+.++++++ +++-.     ....+......++.+  .        +
T Consensus       131 ATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt~~-----i~~~~L~~a~~~~~~--l--------~  195 (389)
T PRK09560        131 ATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYTSD-----LSLPALALAAIAIAV--L--------F  195 (389)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecCCC-----CCHHHHHHHHHHHHH--H--------H
Confidence            233333333333222 25667788999999999999998888 66311     223333333222211  1        2


Q ss_pred             HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc------hhhHHHHHHHHHHHHHHHHH
Q 003256          262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL------GSALVEKSEAILSNFFLPFF  335 (836)
Q Consensus       262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~------~~~l~~kl~~~~~~~flPlF  335 (836)
                      +.+|..    ++....+..+.+  +.-+....-|+|+.++..++|+++|..++.      .+++++++++.+..+.+|+|
T Consensus       196 ~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlF  269 (389)
T PRK09560        196 LLNRLG----VTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLF  269 (389)
T ss_pred             HHHHcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHH
Confidence            223322    233444555443  333444578999999999999999975322      25678888999888899999


Q ss_pred             -HHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHH
Q 003256          336 -YIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELVTF  404 (836)
Q Consensus       336 -F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~~~  404 (836)
                       |...|..++-..+.+ ..-.....+++..++||.+|.+..++..          +.+|++-..+|++-+.-=++++-++
T Consensus       270 AlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa  348 (389)
T PRK09560        270 AFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIG  348 (389)
T ss_pred             HhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             889998884322321 1112344555666788999888877653          5689999999987667778899999


Q ss_pred             hhhhh
Q 003256          405 LRWRQ  409 (836)
Q Consensus       405 ~~~~~  409 (836)
                      +.++.
T Consensus       349 ~LAF~  353 (389)
T PRK09560        349 SLAFG  353 (389)
T ss_pred             HhhcC
Confidence            99983

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=99.08  E-value=8.6e-10  Score=106.68  Aligned_cols=134  Identities=7%  Similarity=0.002  Sum_probs=84.1

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND  542 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  542 (836)
                      -|||+|++.+++...+++.+..++..  .+..++++|+.+......+..........  .....++..+.++.+.+..  
T Consensus         4 ~~ILvavD~S~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~--   77 (144)
T PRK15118          4 KHILIAVDLSPESKVLVEKAVSMARP--YNAKVSLIHVDVNYSDLYTGLIDVNLGDM--QKRISEETHHALTELSTNA--   77 (144)
T ss_pred             eEEEEEccCChhHHHHHHHHHHHHHh--hCCEEEEEEEccChhhhhhhhhhcchHHH--HHHHHHHHHHHHHHHHHhC--
Confidence            37999999999999999998887743  35689999984321110000000000000  1111223334445544322  


Q ss_pred             ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                      ++.+.....  ..++.++.|++.|++.++||||||.|++ + .  +  .+||+.++|+++|||||.|+
T Consensus        78 ~~~~~~~~~--~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-~-~--~--~lgSva~~v~~~a~~pVLvv  137 (144)
T PRK15118         78 GYPITETLS--GSGDLGQVLVDAIKKYDMDLVVCGHHQD-F-W--S--KLMSSARQLINTVHVDMLIV  137 (144)
T ss_pred             CCCceEEEE--EecCHHHHHHHHHHHhCCCEEEEeCccc-H-H--H--HHHHHHHHHHhhCCCCEEEe
Confidence            343322221  2368899999999999999999999953 1 1  2  36899999999999998653

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=99.06  E-value=2.1e-08  Score=109.40  Aligned_cols=270  Identities=12%  Similarity=0.148  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256          110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS  183 (836)
Q Consensus       110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls  183 (836)
                      ....+.+.-+.+|.|.+|+|++.+.+.   ++.|++   ..-++.|+++|.++=..+..  +...     ..--+|+-+ 
T Consensus        59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~-----~~~GWaIP~-  130 (388)
T PRK09561         59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPV-----TREGWAIPA-  130 (388)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCc-----ccCcccccc-
Confidence            445566667778999999999876653   233443   34567788888754222111  1000     001122211 


Q ss_pred             cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW  261 (836)
Q Consensus       184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~  261 (836)
                      .|+.+....++.=+| ..+..+....++-|++||+.++++++ +++-     +....+......++.+  .        +
T Consensus       131 ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~-----~i~~~~L~~a~~~~~~--l--------~  195 (388)
T PRK09561        131 ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYTS-----DLSMVSLGVAAVAIAV--L--------A  195 (388)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCC-----CccHHHHHHHHHHHHH--H--------H
Confidence            233333333333222 25667788999999999999999888 6631     1222333232222111  1        2


Q ss_pred             HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc----hhhHHHHHHHHHHHHHHHHH-H
Q 003256          262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL----GSALVEKSEAILSNFFLPFF-Y  336 (836)
Q Consensus       262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~----~~~l~~kl~~~~~~~flPlF-F  336 (836)
                      +.+|..    ++....+.++.++  .-+....-|+|+.++..+.|+.+|...+.    -+++++++++.+..+.+|+| |
T Consensus       196 ~ln~~~----v~~~~~Y~~~G~~--lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAf  269 (388)
T PRK09561        196 VLNLCG----VRRTSVYILVGVV--LWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAF  269 (388)
T ss_pred             HHHHcC----CccchHHHHHHHH--HHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHh
Confidence            223322    2334445554433  34445578999999999999999975322    35688889999999999999 8


Q ss_pred             HHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHhh
Q 003256          337 IHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELVTFLR  406 (836)
Q Consensus       337 ~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~~~~~  406 (836)
                      +..|..++-..+. ...-.....+++..++||.+|.+..++..          +++|++-..+|++-+.-=++++-+++.
T Consensus       270 aNAGV~l~~~~~~-~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~L  348 (388)
T PRK09561        270 ANAGVSLQGVTLD-GLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASL  348 (388)
T ss_pred             hcCCeeeccCcHH-hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899888322222 11112344555666788999888877653          468999999998766666888989999


Q ss_pred             hhh
Q 003256          407 WRQ  409 (836)
Q Consensus       407 ~~~  409 (836)
                      +++
T Consensus       349 AF~  351 (388)
T PRK09561        349 AFG  351 (388)
T ss_pred             hcC
Confidence            885

>PRK09982 universal stress protein UspD; Provisional

Probab=99.05  E-value=1.2e-09  Score=105.64  Aligned_cols=134  Identities=9%  Similarity=0.031  Sum_probs=84.4

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND  542 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  542 (836)
                      -+||+|++.+++...+++.+..++.  ..+.+++++|+++......+.....+.+..  .....++..+.++.+.+.. +
T Consensus         4 k~ILvavD~S~~s~~al~~A~~lA~--~~~a~l~llhV~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~   78 (142)
T PRK09982          4 KHIGVAISGNEEDALLVNKALELAR--HNDAHLTLIHIDDGLSELYPGIYFPATEDI--LQLLKNKSDNKLYKLTKNI-Q   78 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHHH--HhCCeEEEEEEccCcchhchhhhccchHHH--HHHHHHHHHHHHHHHHHhc-C
Confidence            3799999999999999998887774  346789999998743211110000000000  0011122222333333322 1


Q ss_pred             ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                      ...++..+..   ++.++.||+.|++.++||||||.| ++|.   + ..++ +.++|+++++|||.|+
T Consensus        79 ~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~---~-~~~~-va~~V~~~s~~pVLvv  137 (142)
T PRK09982         79 WPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFI---N-RLMP-AYRGMINKMSADLLIV  137 (142)
T ss_pred             CCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHH---H-HHHH-HHHHHHhcCCCCEEEe
Confidence            2234444443   689999999999999999999976 5332   1 2455 9999999999998653

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=99.05  E-value=1.6e-09  Score=104.87  Aligned_cols=129  Identities=10%  Similarity=0.065  Sum_probs=86.7

Q ss_pred             EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc---------c---hhhhhhHHHHHHHHHhhcCCCCCE
Q 003256          630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE---------E---EDDKCLDEVVMNDFMASNFGNPNV  697 (836)
Q Consensus       630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~---------~---~~e~~~d~~~l~~~~~~~~~~~~v  697 (836)
                      .|+|+++|++..+.|+++|.++|+..+++++++|++++.....         +   +..++..++.++++.+.... ..+
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~   79 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR-KGV   79 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence            4899999999999999999999999999999999987522110         0   11123334566666544322 233


Q ss_pred             EEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccc-cccchhhccCCCCCc--ceEEEEee
Q 003256          698 VCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELG-IIGDMLASADFAEGM--VSVLVIQS  773 (836)
Q Consensus       698 ~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG-~igd~las~d~~~~~--~SvLvvqq  773 (836)
                      .+....+..+.....+++.. ..+.||||||+|++.      |+.++    .+| .+.+.++..    ++  |+||||+.
T Consensus        80 ~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~------~l~~~----~~gssva~~Vi~~----a~~~c~Vlvv~~  145 (146)
T cd01989          80 QCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDN------HFSMK----FKKSDVASSVLKE----APDFCTVYVVSK  145 (146)
T ss_pred             eEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCC------ceeec----ccCCchhHHHHhc----CCCCceEEEEeC
Confidence            33333333222222333333 255899999999986      77665    577 699999964    66  99999985

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.02  E-value=6.6e-08  Score=105.14  Aligned_cols=271  Identities=14%  Similarity=0.109  Sum_probs=163.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256          110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS  183 (836)
Q Consensus       110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls  183 (836)
                      ..+.+.+.-+.+|.|.+|+|++.+.+.   ++.|++   ..-++.|+++|.++=..+..    ...    ..--+|+-+ 
T Consensus        56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~----~~~----~~~GW~IP~-  126 (383)
T PRK14854         56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH----DIK----VINGWAIPS-  126 (383)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc----CCc----ccCcccccc-
Confidence            345566666778999999999876542   233443   45577788888764332221    100    011122222 


Q ss_pred             cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW  261 (836)
Q Consensus       184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~  261 (836)
                      .|+.+....++.=+| ..+..+.-..++-|++||+.++++++ +++-     +....+......++.  +.+        
T Consensus       127 ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt~-----~i~~~~L~~A~~~~~--~l~--------  191 (383)
T PRK14854        127 ATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYTK-----SLSLLSLSLGTLFIL--AMI--------  191 (383)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecCC-----CccHHHHHHHHHHHH--HHH--------
Confidence            233222233333222 25667778889999999999998888 6531     112222222221111  111        


Q ss_pred             HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc----hhhHHHHHHHHHHHHHHHHH-H
Q 003256          262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL----GSALVEKSEAILSNFFLPFF-Y  336 (836)
Q Consensus       262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~----~~~l~~kl~~~~~~~flPlF-F  336 (836)
                      +.+|..   .++....++++.+  +.-+....-|+|+.++..+.|+++|...+.    .+++++++++.+..+.+|+| |
T Consensus       192 ~~nr~~---~v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~  266 (383)
T PRK14854        192 ICNRIF---KINRSSVYVVLGF--FAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAF  266 (383)
T ss_pred             HHHHhc---CCceehHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHh
Confidence            122210   1223344444433  334445678999999999999999974322    25678888899999999999 8


Q ss_pred             HHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHhh
Q 003256          337 IHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELVTFLR  406 (836)
Q Consensus       337 ~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~~~~~  406 (836)
                      +..|..++-..+. ...-.....+++..++||.+|.+..++..          +++|++-..+|++-+.-=++++-+++.
T Consensus       267 aNAGV~l~~~~~~-~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~L  345 (383)
T PRK14854        267 ANAGISFSGISFS-ILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVL  345 (383)
T ss_pred             hcCCeeeccCcHH-hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999888422222 11112344555666788999888877653          468999999999766777889999999


Q ss_pred             hhhc
Q 003256          407 WRQR  410 (836)
Q Consensus       407 ~~~~  410 (836)
                      +++.
T Consensus       346 AF~~  349 (383)
T PRK14854        346 AFND  349 (383)
T ss_pred             hCCC
Confidence            9853

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=99.01  E-value=2.3e-09  Score=100.76  Aligned_cols=121  Identities=17%  Similarity=0.131  Sum_probs=87.0

Q ss_pred             eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCCc
Q 003256          464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDA  543 (836)
Q Consensus       464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~  543 (836)
                      |||+|++.++....+++.+..++..  .+..++++|+++....  +    .        ....++.++.+.+..+..  +
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~----~--------~~~~~~~l~~~~~~~~~~--~   62 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRLN--R----L--------SEAERRRLAEALRLAEEL--G   62 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c----C--------CHHHHHHHHHHHHHHHHc--C
Confidence            6999999999999999999888754  3668999999863211  0    0        111233444444433321  2


Q ss_pred             eeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccC-CcceEE
Q 003256          544 VTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYA-PCTVGI  609 (836)
Q Consensus       544 v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~A-pCsVgI  609 (836)
                      +  +..+..  .++..+.|++.+++.++|+||||+|++++.   .+..+||+.++|+++| ||||.|
T Consensus        63 ~--~~~~~~--~~~~~~~I~~~~~~~~~dllviG~~~~~~~---~~~~~Gs~~~~v~~~a~~~~v~v  122 (124)
T cd01987          63 A--EVVTLP--GDDVAEAIVEFAREHNVTQIVVGKSRRSRW---RELFRGSLVDRLLRRAGNIDVHI  122 (124)
T ss_pred             C--EEEEEe--CCcHHHHHHHHHHHcCCCEEEeCCCCCchH---HHHhcccHHHHHHHhCCCCeEEE
Confidence            2  233333  357899999999999999999999987444   4458999999999999 999865

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.00  E-value=1.4e-07  Score=104.38  Aligned_cols=266  Identities=11%  Similarity=0.084  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256          110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS  183 (836)
Q Consensus       110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls  183 (836)
                      ....+.+.-+.+|.|.+|+|+..+.+.   ++.|++   ..-++.|+++|.++=..    +-.. .+   ..--+|+-+ 
T Consensus        63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~----~n~~-~~---~~~GWgIPm-  133 (423)
T PRK14855         63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTA----LNAG-GP---GASGWGVPM-  133 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHhe----eecC-CC---ccCcccccc-
Confidence            344556666778999999999876653   233443   34567788888754222    1111 10   111222222 


Q ss_pred             cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW  261 (836)
Q Consensus       184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~  261 (836)
                      .|+.+....+|.=+| ..+..+....++-|++||+.++++++ +++-.     ....+.....+++.+          .+
T Consensus       134 ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~~-----i~~~~L~~a~~~~~~----------l~  198 (423)
T PRK14855        134 ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYTSG-----LNLLALLLAALTWAL----------AL  198 (423)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecCCC-----CCHHHHHHHHHHHHH----------HH
Confidence            234333344444333 24556788899999999999998888 65311     122333332222211          12


Q ss_pred             HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-Cc-------------------------
Q 003256          262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP-PL-------------------------  315 (836)
Q Consensus       262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~-~~-------------------------  315 (836)
                      +.+|..    ++....++++.+  +.-+....-|+|+.++..+.|+++|..+ +.                         
T Consensus       199 ~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (423)
T PRK14855        199 LAGRLG----VTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRD  272 (423)
T ss_pred             HHHHcC----CccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHh
Confidence            233321    233444444443  3344455789999999999999999741 11                         


Q ss_pred             -----------hhhHHHHHHHHHHHHHHHHH-HHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 003256          316 -----------GSALVEKSEAILSNFFLPFF-YIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----  379 (836)
Q Consensus       316 -----------~~~l~~kl~~~~~~~flPlF-F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----  379 (836)
                                 .+++++.+++.+..+.+|+| |+..|..++-..+. +    ....+++..++||.+|.+..++..    
T Consensus       273 ~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~-p----v~lGI~~GLvvGK~lGI~~~s~lavkl~  347 (423)
T PRK14855        273 LEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLG-T----VSLGVFLGLLLGKPLGVVGGAWLAVRLG  347 (423)
T ss_pred             hhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCC-c----HHHHHHHHHHhcchHHHHHHHHHHHHhC
Confidence                       13566777788888999999 88999888433322 2    234455566788999888877653    


Q ss_pred             ------CCChHHHHHHHHHhhhhhhHHHHHHhhhhhc
Q 003256          380 ------RTSFRNALLFSCFVNIKGVSELVTFLRWRQR  410 (836)
Q Consensus       380 ------~~~~real~lg~~m~~rG~v~l~~~~~~~~~  410 (836)
                            +++|++-...|++-+.-=++++-+++.+++.
T Consensus       348 ~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~  384 (423)
T PRK14855        348 LASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD  384 (423)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence                  5789999999997667778899999999853

>PRK15005 universal stress protein F; Provisional

Probab=98.99  E-value=3.4e-09  Score=102.31  Aligned_cols=128  Identities=11%  Similarity=0.100  Sum_probs=86.9

Q ss_pred             ccEEEEEccCCcc--hHHHHHHHHHhhcCCCeEEEEEEEeecCCcc--------cc----hhhhhhHHHHHHHHHhhcCC
Q 003256          628 CYNVAVFFIGGPD--DREAMALVSHMSSNPGVRITLSRIYLEENLV--------EE----EDDKCLDEVVMNDFMASNFG  693 (836)
Q Consensus       628 ~~~I~v~f~Gg~d--dreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~--------~~----~~e~~~d~~~l~~~~~~~~~  693 (836)
                      +++|++|.+|++.  ++.|+++|.++|+..+++++++|++++....        .+    +..++..++.++++.++...
T Consensus         2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (144)
T PRK15005          2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL   81 (144)
T ss_pred             CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence            4689999999998  4799999999999999999999999752110        00    11122333566666655422


Q ss_pred             CCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          694 NPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       694 ~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                       ..+.+.. .+..|.....+++.. ..++||||||+|+ .      |+.+|    -+|...+.+..    .++++||||+
T Consensus        82 -~~~~~~~-~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~------~~~~~----llGS~a~~vl~----~a~cpVlvVr  144 (144)
T PRK15005         82 -PTDRVHV-HVEEGSPKDRILELAKKIPADMIIIASHR-P------DITTY----LLGSNAAAVVR----HAECSVLVVR  144 (144)
T ss_pred             -CCCceEE-EEeCCCHHHHHHHHHHHcCCCEEEEeCCC-C------Cchhe----eecchHHHHHH----hCCCCEEEeC
Confidence             2222222 244454444444433 3679999999884 4      66665    68999999996    5899999985

>PRK09982 universal stress protein UspD; Provisional

Probab=98.95  E-value=2.9e-09  Score=102.96  Aligned_cols=125  Identities=11%  Similarity=0.060  Sum_probs=84.6

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCc---c----c-c---hhhhhhHHHHHHHHHhhcCCCCC
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL---V----E-E---EDDKCLDEVVMNDFMASNFGNPN  696 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~---~----~-~---~~e~~~d~~~l~~~~~~~~~~~~  696 (836)
                      +++|++|.+|+++++.|+++|.++|+.++++++++|++++...   .    . +   +..++..++.+++.++... ...
T Consensus         3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~   81 (142)
T PRK09982          3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK   81 (142)
T ss_pred             ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence            5789999999999999999999999999999999999864211   0    0 0   1112223345666665442 223


Q ss_pred             EEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEee
Q 003256          697 VVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQS  773 (836)
Q Consensus       697 v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq  773 (836)
                      +.+.   +..|.....+++.. ..++||||||+| +.      |+++|     +| +.+.+..    .++++||||+-
T Consensus        82 ~~~~---v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~------~~~~~-----~~-va~~V~~----~s~~pVLvv~~  139 (142)
T PRK09982         82 TKLR---IERGEMPETLLEIMQKEQCDLLVCGHH-HS------FINRL-----MP-AYRGMIN----KMSADLLIVPF  139 (142)
T ss_pred             ceEE---EEecCHHHHHHHHHHHcCCCEEEEeCC-hh------HHHHH-----HH-HHHHHHh----cCCCCEEEecC
Confidence            3333   33343333344433 367999999986 54      77776     46 8888884    69999999963

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=98.94  E-value=3e-09  Score=100.54  Aligned_cols=137  Identities=12%  Similarity=0.145  Sum_probs=86.7

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND  542 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  542 (836)
                      -|||+|++++++...+++.+..++..  ....++++|+++.............................. +....  ..
T Consensus         3 ~~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~   77 (140)
T PF00582_consen    3 KRILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEA-EEAEA--EG   77 (140)
T ss_dssp             SEEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HT
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeeccccccccccccccccccccchhhhhhhHHH-HHHhh--hc
Confidence            38999999999999999998887744  467999999998654321110000000000000000000000 11111  12


Q ss_pred             ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                      ..........   .+..+.|++.+++.++|+||||.|++.+..   +..+|++.+++++++||||.|+
T Consensus        78 ~~~~~~~~~~---~~~~~~i~~~~~~~~~dliv~G~~~~~~~~---~~~~gs~~~~l~~~~~~pVlvv  139 (140)
T PF00582_consen   78 GIVIEVVIES---GDVADAIIEFAEEHNADLIVMGSRGRSGLE---RLLFGSVAEKLLRHAPCPVLVV  139 (140)
T ss_dssp             TSEEEEEEEE---SSHHHHHHHHHHHTTCSEEEEESSSTTSTT---TSSSHHHHHHHHHHTSSEEEEE
T ss_pred             cceeEEEEEe---eccchhhhhccccccceeEEEeccCCCCcc---CCCcCCHHHHHHHcCCCCEEEe
Confidence            2333333332   589999999999999999999999874443   3479999999999999999764

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=98.90  E-value=1.5e-08  Score=95.88  Aligned_cols=126  Identities=13%  Similarity=0.082  Sum_probs=84.5

Q ss_pred             EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc---chhhhhhHHHHHHHHHhhcCC-CCCEEEEEEEcC
Q 003256          630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE---EEDDKCLDEVVMNDFMASNFG-NPNVVCRRIDAN  705 (836)
Q Consensus       630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~---~~~e~~~d~~~l~~~~~~~~~-~~~v~y~e~~v~  705 (836)
                      ||+||.+|+++++.+|++|.+||+..+++++++|+.++.....   .+.+.+..++.++.+.+.... +..+.+..  ..
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~   78 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTII--RI   78 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEE--Ee
Confidence            5899999999999999999999999999999999997532211   112223334555555544321 12333222  11


Q ss_pred             ChHHHHHHHHhc--ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          706 DSNQLVNAFRSL--VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       706 ~g~~~~~~i~~~--~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                      .+ +..+.|.++  +.++||+|||++++.      ++.+    ..+|...+.+..    .++++||||+
T Consensus        79 ~~-~~~~~I~~~a~~~~~dlIV~G~~~~~------~~~~----~~lGs~~~~v~~----~~~~pvlvv~  132 (132)
T cd01988          79 DH-DIASGILRTAKERQADLIIMGWHGST------SLRD----RLFGGVIDQVLE----SAPCDVAVVK  132 (132)
T ss_pred             cC-CHHHHHHHHHHhcCCCEEEEecCCCC------Cccc----eecCchHHHHHh----cCCCCEEEeC
Confidence            22 222333333  256999999999876      4433    379999999996    5889999985

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>PRK15456 universal stress protein UspG; Provisional

Probab=98.90  E-value=1.3e-08  Score=98.19  Aligned_cols=127  Identities=11%  Similarity=0.038  Sum_probs=84.5

Q ss_pred             ccEEEEEccCCc--chHHHHHHHHHhhcCCCeEEEEEEEeecCCcc------c--c---hhhhhhHHHHHHHHHhhcCCC
Q 003256          628 CYNVAVFFIGGP--DDREAMALVSHMSSNPGVRITLSRIYLEENLV------E--E---EDDKCLDEVVMNDFMASNFGN  694 (836)
Q Consensus       628 ~~~I~v~f~Gg~--ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~------~--~---~~e~~~d~~~l~~~~~~~~~~  694 (836)
                      +++|++|.+|++  .++.|+++|.++|+.. .+++++|++++....      .  +   +..++..++.++++...... 
T Consensus         2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-   79 (142)
T PRK15456          2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI-   79 (142)
T ss_pred             CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC-
Confidence            469999999984  7999999999999875 699999998752210      1  1   11123344566666655422 


Q ss_pred             CCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          695 PNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       695 ~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                      ..+.+. ..+..|....++++.. +.+.||||||+|++       |+.+|    -+|...+.++.    .++|+||||+
T Consensus        80 ~~~~v~-~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~-------~~~~~----llGS~a~~v~~----~a~~pVLvV~  142 (142)
T PRK15456         80 DPSRIK-QHVRFGSVRDEVNELAEELGADVVVIGSRNP-------SISTH----LLGSNASSVIR----HANLPVLVVR  142 (142)
T ss_pred             CCcceE-EEEcCCChHHHHHHHHhhcCCCEEEEcCCCC-------Cccce----ecCccHHHHHH----cCCCCEEEeC
Confidence            222222 2234453333333322 36799999999975       54443    69999999996    5899999985

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH

Probab=98.89  E-value=1.1e-08  Score=111.54  Aligned_cols=272  Identities=15%  Similarity=0.184  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256          110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS  183 (836)
Q Consensus       110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls  183 (836)
                      ..+.+.+.-+.+|.|.+|+|+..+.+.   ++.||+   ..-++.|+++|.++      |+...... ....--+|+- .
T Consensus        55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI------yl~~n~~~-~~~~~GW~IP-~  126 (378)
T PF06965_consen   55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI------YLAFNAGG-PEAAHGWAIP-M  126 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH------HGGG--SS-TTHHHHTSSS-S
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH------HheeecCC-CCcCceEEec-c
Confidence            445566777788999999999876542   233433   34466677777643      11111110 0011233332 2


Q ss_pred             cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW  261 (836)
Q Consensus       184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~  261 (836)
                      .|+.+....++.=++ ..+..+....++-|++||+.++++++ +++-   +  ....+.....+++.  ..        |
T Consensus       127 ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt~---~--i~~~~L~~a~~~~~--~l--------~  191 (378)
T PF06965_consen  127 ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYTD---G--ISLLWLLLAAAALL--LL--------F  191 (378)
T ss_dssp             ---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------HHHHHHHHHHHH--HH--------H
T ss_pred             cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeCC---C--CCHHHHHHHHHHHH--HH--------H
Confidence            355555555555443 24566788999999999999999988 6631   1  12222222222111  11        2


Q ss_pred             HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch--------hhHHHHHHHHHHHHHHH
Q 003256          262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG--------SALVEKSEAILSNFFLP  333 (836)
Q Consensus       262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~--------~~l~~kl~~~~~~~flP  333 (836)
                      ..+|..    ++....+..+.+  +.-+....-|+|+.++..+.|+.+|..++.+        +++++++++.++.+.+|
T Consensus       192 ~l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlP  265 (378)
T PF06965_consen  192 VLNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILP  265 (378)
T ss_dssp             HHHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHH
Confidence            233322    223344444432  3344456789999999999999999875442        47888888999999999


Q ss_pred             HH-HHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHH
Q 003256          334 FF-YIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELV  402 (836)
Q Consensus       334 lF-F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~  402 (836)
                      +| |+..|..++-..+... .-.....+++..++||.+|.+..++..          +++|++-...|++-+.-=++++-
T Consensus       266 lFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLF  344 (378)
T PF06965_consen  266 LFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLF  344 (378)
T ss_dssp             HHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHH
T ss_pred             hHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99 8999998886654311 112233445566789999988876653          46788888888876666788999


Q ss_pred             HHhhhhhcc
Q 003256          403 TFLRWRQRE  411 (836)
Q Consensus       403 ~~~~~~~~~  411 (836)
                      +++.+++..
T Consensus       345 Ia~LAF~~~  353 (378)
T PF06965_consen  345 IAGLAFDDP  353 (378)
T ss_dssp             HHHHHSTT-
T ss_pred             HHHHHcCCh
Confidence            999998863

NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=98.85  E-value=8.1e-10  Score=123.96  Aligned_cols=367  Identities=11%  Similarity=0.071  Sum_probs=227.4

Q ss_pred             HHHHHHHHhcccC--CChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhc
Q 003256           61 ISQILYILLRPLK--QPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRT  138 (836)
Q Consensus        61 ~s~l~~~ll~rl~--~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~  138 (836)
                      ++.+...+..+++  .|.-...|+.|+++|-.+.+....-.   +..++ ++   +--.-+--++|-+|.-|.-+.+..+
T Consensus        53 LaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~---~~L~s-~v---FFlyLLPPIvlDAGYfMp~r~Ff~N  125 (670)
T KOG1966|consen   53 LAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAP---FFLES-DV---FFLYLLPPIVLDAGYFMPNRAFFEN  125 (670)
T ss_pred             HHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcccc---ccccc-cc---hhhhhcCHHHhcccccCccHHHHhc
Confidence            3344444444444  79888999999999976544311000   00011 11   1111122367899999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHh--hcccc--ccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHH
Q 003256          139 IKKTYSVSLTVFIVPLLISLLVGHRE--QYKIP--RIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALL  214 (836)
Q Consensus       139 ~~~~~~ia~~~~l~p~~lg~~~~~~l--~~~~~--~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v  214 (836)
                      ..+.+..+..|.+.-.+...+.-|.+  ...+.  .+.-..++.|...|..++..+..+..|.. .|.-+=-++.+++++
T Consensus       126 lgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESLl  204 (670)
T KOG1966|consen  126 LGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESLL  204 (670)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhhh
Confidence            99999999998887544322222221  11222  11112488999999999999999999998 577777889999999


Q ss_pred             HHHHHHHHHH-HHHhhcccc-h------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHH
Q 003256          215 HEIVGLLRLL-MAPLSKAKY-R------SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALV  286 (836)
Q Consensus       215 ~Di~~~~ll~-~~~~~~~~~-~------~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~  286 (836)
                      ||.+.+++.- ..+...-++ +      ......++...+.++.++.++..+.....|.+..   ++-...++++.+.+.
T Consensus       205 NDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~pYl  281 (670)
T KOG1966|consen  205 NDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLLPYL  281 (670)
T ss_pred             cCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhHHHH
Confidence            9999998877 554432211 1      0111111111222333444444445545555432   344566788888999


Q ss_pred             HHHHHHHhchhHHHHHHHHHhhccCCC--CchhhH---HHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 003256          287 MAVACDSMRVNYTIGAAMLGIVIPAGP--PLGSAL---VEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELII  361 (836)
Q Consensus       287 ~~~iae~~G~~~~lGaf~aGl~i~~~~--~~~~~l---~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii  361 (836)
                      ++..+|.+++|++++-.++|+++...-  ...++.   ++.+-...+..--++.|++.|..+--. -..| ++.++.+-+
T Consensus       282 aYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~-~h~w-d~~Fi~~T~  359 (670)
T KOG1966|consen  282 AYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS-NHHW-DFAFICLTL  359 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC-ccee-ehhhhhhHH
Confidence            999999999999999999999997641  122222   222223345566677888888876322 1212 344455555


Q ss_pred             HHHHHHHHHHHHHHHhhc------CCChHHHHHHHHHhhhhhhHHHHHHhhhhhc-----cccchhhHHHHHHHHHHHHH
Q 003256          362 MAAYIGKVVASILATTCF------RTSFRNALLFSCFVNIKGVSELVTFLRWRQR-----ELIDVQTYSVLVLTNLAVTA  430 (836)
Q Consensus       362 ~~~~~~K~~~~~l~~~~~------~~~~real~lg~~m~~rG~v~l~~~~~~~~~-----~ii~~~~~~~~vl~~lv~t~  430 (836)
                      +.+.+.|.+++...+++.      +++..|-+.++.. +-||.+...+...--..     .+.=..++.++.+++.++.+
T Consensus       360 ~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVflQGi  438 (670)
T KOG1966|consen  360 VFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFLQGI  438 (670)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeeeccc
Confidence            566677888877777665      4567777777653 56887766654432212     22334555666677888888


Q ss_pred             hHHHHHHHhcc
Q 003256          431 IVTPLISVYYN  441 (836)
Q Consensus       431 i~~plv~~l~~  441 (836)
                      ...|+++++--
T Consensus       439 TIkplvk~L~V  449 (670)
T KOG1966|consen  439 TIKPLVKFLKV  449 (670)
T ss_pred             chHHHHHHHcc
Confidence            99999999863

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=98.83  E-value=2.2e-08  Score=94.61  Aligned_cols=127  Identities=16%  Similarity=0.217  Sum_probs=83.4

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccch------hhhhhHHHHHH-----HHHhhcCCCCC
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEE------DDKCLDEVVMN-----DFMASNFGNPN  696 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~------~e~~~d~~~l~-----~~~~~~~~~~~  696 (836)
                      .+||+++++|++++++|+++|.++|+..+++++++|+.++.......      .....++....     +....  ....
T Consensus         2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   79 (140)
T PF00582_consen    2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEA--EGGI   79 (140)
T ss_dssp             TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTS
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhh--hccc
Confidence            47999999999999999999999999999999999999864332110      00000000000     00111  1122


Q ss_pred             EEEEEEEcCChHH-HHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          697 VVCRRIDANDSNQ-LVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       697 v~y~e~~v~~g~~-~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                      ..+......+..+ +.+.++  ..++||+|||++++.      ++.+|    -+|.+.+.++.    .++++||||.
T Consensus        80 ~~~~~~~~~~~~~~i~~~~~--~~~~dliv~G~~~~~------~~~~~----~~gs~~~~l~~----~~~~pVlvv~  140 (140)
T PF00582_consen   80 VIEVVIESGDVADAIIEFAE--EHNADLIVMGSRGRS------GLERL----LFGSVAEKLLR----HAPCPVLVVP  140 (140)
T ss_dssp             EEEEEEEESSHHHHHHHHHH--HTTCSEEEEESSSTT------STTTS----SSHHHHHHHHH----HTSSEEEEEE
T ss_pred             eeEEEEEeeccchhhhhccc--cccceeEEEeccCCC------CccCC----CcCCHHHHHHH----cCCCCEEEeC
Confidence            3333333344332 222222  377999999999976      66665    59999999996    4889999985

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>PRK10116 universal stress protein UspC; Provisional

Probab=98.78  E-value=3.4e-08  Score=95.15  Aligned_cols=134  Identities=8%  Similarity=-0.009  Sum_probs=86.6

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND  542 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  542 (836)
                      -|||++++.+++...+++.+..++...  ...++++|+++..... ... .....+.. .....++..+.++++.+.  .
T Consensus         4 ~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~~l~~~~~~--~   76 (142)
T PRK10116          4 SNILVAVAVTPESQQLLAKAVSIARPV--NGKISLITLASDPEMY-NQF-AAPMLEDL-RSVMQEETQSFLDKLIQD--A   76 (142)
T ss_pred             ceEEEEccCCcchHHHHHHHHHHHHHh--CCEEEEEEEccCcccc-hhh-hHHHHHHH-HHHHHHHHHHHHHHHHHh--c
Confidence            489999999999999999988887443  5688999998653111 000 00000000 111222333445554432  2


Q ss_pred             ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                      ++.....  .-..++..+.|++.|++.++||||||.|++++..     .++++.++|++++||||.|+
T Consensus        77 ~~~~~~~--~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~-----~~~s~a~~v~~~~~~pVLvv  137 (142)
T PRK10116         77 DYPIEKT--FIAYGELSEHILEVCRKHHFDLVICGNHNHSFFS-----RASCSAKRVIASSEVDVLLV  137 (142)
T ss_pred             CCCeEEE--EEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHH-----HHHHHHHHHHhcCCCCEEEE
Confidence            3333211  1235788999999999999999999999874432     12488999999999999765

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=98.76  E-value=2.4e-08  Score=96.55  Aligned_cols=126  Identities=10%  Similarity=0.072  Sum_probs=82.0

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc------c--chhh---hhhHHHHHHHHHhhcCCCCC
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV------E--EEDD---KCLDEVVMNDFMASNFGNPN  696 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~------~--~~~e---~~~d~~~l~~~~~~~~~~~~  696 (836)
                      +++|++|.+|++.++.||++|..+|+..+++++++|+..+....      .  ++.+   ++...+.++++..+.    .
T Consensus         3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~   78 (144)
T PRK15118          3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----G   78 (144)
T ss_pred             ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----C
Confidence            57999999999999999999999999999999999995321110      0  0111   111223344444321    1


Q ss_pred             EEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeec
Q 003256          697 VVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSV  774 (836)
Q Consensus       697 v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~  774 (836)
                      +...+..+..|....++++.. ..++||||||+|++       ++.      .+|...+.+..    .++++||||+..
T Consensus        79 ~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-------~~~------~lgSva~~v~~----~a~~pVLvv~~~  140 (144)
T PRK15118         79 YPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQD-------FWS------KLMSSARQLIN----TVHVDMLIVPLR  140 (144)
T ss_pred             CCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCccc-------HHH------HHHHHHHHHHh----hCCCCEEEecCC
Confidence            222222333444444444444 36799999999953       221      27899999995    589999999863

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=98.76  E-value=1.2e-06  Score=91.84  Aligned_cols=260  Identities=13%  Similarity=0.167  Sum_probs=157.1

Q ss_pred             HHHHHHHhhhccCcchhhh---ccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHH
Q 003256          119 GIYFVFINTVKMDKGMIPR---TIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVD  192 (836)
Q Consensus       119 l~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~  192 (836)
                      ..+|.+.+|+|++.+.+..   +++++   ..-++.|++.|.++    +.++ ....+  ...--++ +-+.|+.+....
T Consensus        71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~-n~~~p--~~~~GWa-IP~ATDiAFAlG  142 (390)
T COG3004          71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLAL-NAGDP--ATLEGWA-IPMATDIAFALG  142 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hhee-ecCCh--hhhcCcC-cccHHHHHHHHH
Confidence            4567788999998877643   34443   34456677777643    1111 11110  0001111 122344444444


Q ss_pred             HHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 003256          193 AISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERK  270 (836)
Q Consensus       193 iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~  270 (836)
                      +++-++ ..++.+.-..++-|++||+-+++..+ ...-.     .+..+.....++  +....        ..+|.    
T Consensus       143 vlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~~-----Ls~~al~~a~~~--i~vL~--------~lN~~----  203 (390)
T COG3004         143 VLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTTD-----LSMAALGIAALA--IAVLA--------VLNRL----  203 (390)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhcCC-----ccHHHHHHHHHH--HHHHH--------HHHHh----
Confidence            444442 35777888899999999999998888 65321     112222121111  11111        11221    


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch----hhHHHHHHHHHHHHHHHHH-HHHhhcccc-
Q 003256          271 PVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG----SALVEKSEAILSNFFLPFF-YIHVGQQID-  344 (836)
Q Consensus       271 ~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~----~~l~~kl~~~~~~~flPlF-F~~~Gl~id-  344 (836)
                      .++....++++..++..+  -..-|+|..++..+.|+.+|-....+    +++++.+++.+..+.+|+| |...|..++ 
T Consensus       204 ~v~~l~~Y~~~gviLW~~--vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g  281 (390)
T COG3004         204 GVRRLSPYLLVGVILWIA--VLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQG  281 (390)
T ss_pred             CchhhhHHHHHHHHHHHH--HHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCccccc
Confidence            122234444554444333  34679999999999999999653333    5677778888889999999 889998776 


Q ss_pred             --ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHhhhhhcc
Q 003256          345 --IYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELVTFLRWRQRE  411 (836)
Q Consensus       345 --l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~~~~~~~~~~  411 (836)
                        ...+.+    .....+++..++||.++.+..++..          +.+|++-...+++-+..=++++-+.+.+++..
T Consensus       282 ~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~~  356 (390)
T COG3004         282 VSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGSE  356 (390)
T ss_pred             cccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCCh
Confidence              333331    2234555666889999888877653          56899988888876666678888888888653

>PRK11175 universal stress protein UspE; Provisional

Probab=98.74  E-value=4e-08  Score=107.41  Aligned_cols=143  Identities=10%  Similarity=0.008  Sum_probs=87.6

Q ss_pred             ceeEEeecCCCCh-------HHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcc-cccccccccCchHHHHHHHH
Q 003256          463 LRILCGIHDEDHI-------SGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETY-STQKTKAMANSTDHIMRAVI  534 (836)
Q Consensus       463 lriLvcv~~~~~~-------~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~-~~~~~~~~~~~~~~i~~af~  534 (836)
                      -+||+|++.++..       ..+++.+..++... ....++++|+.+............ ...+.  .....++..+.++
T Consensus       153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~  229 (305)
T PRK11175        153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NHAEVHLVNAYPVTPINIAIELPEFDPSVY--NDAIRGQHLLAMK  229 (305)
T ss_pred             CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cCCceEEEEEecCcchhccccccccchhhH--HHHHHHHHHHHHH
Confidence            5899999987653       45777777766432 145889999986442110000000 00000  0011122333444


Q ss_pred             HHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCC
Q 003256          535 KYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKR  614 (836)
Q Consensus       535 ~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg  614 (836)
                      ++.+..  ++........  .++..+.|++.|+++++||||||+|++.+..   +..+||+.++|++++||||.++.++|
T Consensus       230 ~~~~~~--~~~~~~~~v~--~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~---~~llGS~a~~v~~~~~~pVLvv~~~~  302 (305)
T PRK11175        230 ALRQKF--GIDEEQTHVE--EGLPEEVIPDLAEHLDAELVILGTVGRTGLS---AAFLGNTAEHVIDHLNCDLLAIKPDG  302 (305)
T ss_pred             HHHHHh--CCChhheeec--cCCHHHHHHHHHHHhCCCEEEECCCccCCCc---ceeecchHHHHHhcCCCCEEEEcCCC
Confidence            443322  2222211112  2578899999999999999999999886553   34899999999999999997765555


Q ss_pred             C
Q 003256          615 L  615 (836)
Q Consensus       615 ~  615 (836)
                      +
T Consensus       303 ~  303 (305)
T PRK11175        303 Y  303 (305)
T ss_pred             C
Confidence            3

>PRK10116 universal stress protein UspC; Provisional

Probab=98.71  E-value=4.9e-08  Score=93.99  Aligned_cols=125  Identities=12%  Similarity=0.109  Sum_probs=83.3

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCc---c-c---chh---hhhhHHHHHHHHHhhcCCCCCE
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL---V-E---EED---DKCLDEVVMNDFMASNFGNPNV  697 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~---~-~---~~~---e~~~d~~~l~~~~~~~~~~~~v  697 (836)
                      +++|+++.+++++.+.||++|.++|+..++++++++++++...   . .   ++.   .++..++.++++..+.    .+
T Consensus         3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~   78 (142)
T PRK10116          3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA----DY   78 (142)
T ss_pred             CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence            5799999999999999999999999999999999999864211   0 0   011   1111224455544332    12


Q ss_pred             EEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          698 VCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       698 ~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                      ......+..|.....+++.. ..++||+|+|+|++.      ++++|      +..++.++.    .++++||||.
T Consensus        79 ~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~------~~~~~------~s~a~~v~~----~~~~pVLvv~  138 (142)
T PRK10116         79 PIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHS------FFSRA------SCSAKRVIA----SSEVDVLLVP  138 (142)
T ss_pred             CeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcch------HHHHH------HHHHHHHHh----cCCCCEEEEe
Confidence            11222344454444555443 357999999999875      66554      356888885    6999999996

>cd00293 USP_Like Usp: Universal stress protein family

Probab=98.66  E-value=1.9e-07  Score=87.17  Aligned_cols=129  Identities=16%  Similarity=0.204  Sum_probs=88.7

Q ss_pred             eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCCc
Q 003256          464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDA  543 (836)
Q Consensus       464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~  543 (836)
                      +||+|++++++...+++.+..++...  +..++++|+.+..+....     ...+.  .....++.++.+.....  ..+
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a~~~--~~~i~~l~v~~~~~~~~~-----~~~~~--~~~~~~~~l~~~~~~~~--~~~   69 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARRL--GAELVLLHVVDPPPSSAA-----ELAEL--LEEEARALLEALREALA--EAG   69 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCCCCcch-----hHHHH--HHHHHHHHHHHHHHHHh--cCC
Confidence            68999999999999999998888654  678999999765433211     00000  11112333333333211  234


Q ss_pred             eeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          544 VTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       544 v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                      +.++......   +..++|++.+++.++|++|||++++++.   .+..+|++.++++++++|||.+
T Consensus        70 ~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~---~~~~~~~~~~~ll~~~~~pvli  129 (130)
T cd00293          70 VKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGL---RRLLLGSVAERVLRHAPCPVLV  129 (130)
T ss_pred             CceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcc---ceeeeccHHHHHHhCCCCCEEe
Confidence            5565555443   3489999999999999999999987443   2347899999999999999864

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=98.63  E-value=2.1e-07  Score=87.34  Aligned_cols=121  Identities=10%  Similarity=0.099  Sum_probs=82.0

Q ss_pred             EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHH
Q 003256          630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQ  709 (836)
Q Consensus       630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~  709 (836)
                      ||+++++|++.+++|+++|.++|++.+++|+++|+.++......    +..++.++++++.... ..+.+..  +..+ +
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~----~~~~~~l~~~~~~~~~-~~~~~~~--~~~~-~   72 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLS----EAERRRLAEALRLAEE-LGAEVVT--LPGD-D   72 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCC----HHHHHHHHHHHHHHHH-cCCEEEE--EeCC-c
Confidence            58999999999999999999999999999999999986432111    1122344444433211 1233322  2222 2


Q ss_pred             HHHHHHhc--ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEE
Q 003256          710 LVNAFRSL--VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVI  771 (836)
Q Consensus       710 ~~~~i~~~--~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvv  771 (836)
                      ..+.|.+.  +.+.|++++|+|++.      ++.++    .+|...+.++..   ..+++|||+
T Consensus        73 ~~~~I~~~~~~~~~dllviG~~~~~------~~~~~----~~Gs~~~~v~~~---a~~~~v~v~  123 (124)
T cd01987          73 VAEAIVEFAREHNVTQIVVGKSRRS------RWREL----FRGSLVDRLLRR---AGNIDVHIV  123 (124)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCc------hHHHH----hcccHHHHHHHh---CCCCeEEEe
Confidence            23333333  366899999999886      66654    799999999964   238899997

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>cd00293 USP_Like Usp: Universal stress protein family

Probab=98.52  E-value=1.3e-06  Score=81.51  Aligned_cols=125  Identities=12%  Similarity=0.142  Sum_probs=84.1

Q ss_pred             EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc---chhhhhhHHHHHHHHHhhcC-CCCCEEEEEEEcC
Q 003256          630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE---EEDDKCLDEVVMNDFMASNF-GNPNVVCRRIDAN  705 (836)
Q Consensus       630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~---~~~e~~~d~~~l~~~~~~~~-~~~~v~y~e~~v~  705 (836)
                      +|++++++++..+.++.+|.++|+..+++++++++.++.....   ++.+....++.++++..... .+.++.+.-  . 
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~-   77 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVV--L-   77 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEE--e-
Confidence            5899999999999999999999999999999999987643211   11223334466777766531 122344332  2 


Q ss_pred             ChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEE
Q 003256          706 DSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVI  771 (836)
Q Consensus       706 ~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvv  771 (836)
                      .+......++.. ..++|++|+|++++.      ++.+|    ..|.+.+.|..    .++++||+|
T Consensus        78 ~~~~~~~i~~~~~~~~~dlvvig~~~~~------~~~~~----~~~~~~~~ll~----~~~~pvliv  130 (130)
T cd00293          78 EGDPAEAILEAAEELGADLIVMGSRGRS------GLRRL----LLGSVAERVLR----HAPCPVLVV  130 (130)
T ss_pred             cCCCHHHHHHHHHHcCCCEEEEcCCCCC------cccee----eeccHHHHHHh----CCCCCEEeC
Confidence            232222333332 366899999998775      44333    68999999995    478899875

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=98.29  E-value=9.4e-06  Score=78.40  Aligned_cols=138  Identities=14%  Similarity=0.176  Sum_probs=87.0

Q ss_pred             ceeEEeec-CCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchh-cccccc---cccccCchHHHHHHHHHHh
Q 003256          463 LRILCGIH-DEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVE-TYSTQK---TKAMANSTDHIMRAVIKYA  537 (836)
Q Consensus       463 lriLvcv~-~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~-~~~~~~---~~~~~~~~~~i~~af~~~~  537 (836)
                      -+||++++ .++......+.+...+...  ...++++++++.......... ......   ........++..+..+...
T Consensus         6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (154)
T COG0589           6 KKILVAVDVGSEAAEKALEEAVALAKRL--GAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA   83 (154)
T ss_pred             ceEEEEeCCCCHHHHHHHHHHHHHHHhc--CCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            58999999 8888888888887776543  446667887765443211111 000000   0001122344455444443


Q ss_pred             hcCCCcee-EEEEEEEcCCcch-HHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          538 EGSNDAVT-IQPFIMISQYETM-HESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       538 ~~~~~~v~-v~~~t~vs~~~~m-~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                      +..  .+. ++.....   .+. .+.|+..|.+.++|+||||.+++++..+   ..+||+.++|++++||||.++
T Consensus        84 ~~~--~~~~~~~~~~~---g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~---~llGsvs~~v~~~~~~pVlvv  150 (154)
T COG0589          84 EAA--GVPVVETEVVE---GSPSAEEILELAEEEDADLIVVGSRGRSGLSR---LLLGSVAEKVLRHAPCPVLVV  150 (154)
T ss_pred             HHc--CCCeeEEEEec---CCCcHHHHHHHHHHhCCCEEEECCCCCccccc---eeeehhHHHHHhcCCCCEEEE
Confidence            322  222 2333332   344 6999999999999999999998755533   589999999999999998654

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=97.87  E-value=8.6e-05  Score=82.26  Aligned_cols=125  Identities=11%  Similarity=0.000  Sum_probs=79.0

Q ss_pred             cccEEEEEccCCcchHHHHHHHHHhhcCC--CeEEEEEEEeecCCcccc-hhhhhhHHHHHHHHHhhcCC-----CCCEE
Q 003256          627 FCYNVAVFFIGGPDDREAMALVSHMSSNP--GVRITLSRIYLEENLVEE-EDDKCLDEVVMNDFMASNFG-----NPNVV  698 (836)
Q Consensus       627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~--~~~Ltvvrv~~~~~~~~~-~~e~~~d~~~l~~~~~~~~~-----~~~v~  698 (836)
                      .++||+||++|++.++.|+++|..+|+..  +++++++|+++....... +...+..++.+++.++....     ...+.
T Consensus         4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~   83 (357)
T PRK12652          4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVT   83 (357)
T ss_pred             ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Confidence            46899999999999999999999999884  699999999975322111 11112223344444433211     12344


Q ss_pred             EEEEEcC-------ChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCC
Q 003256          699 CRRIDAN-------DSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADF  761 (836)
Q Consensus       699 y~e~~v~-------~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~  761 (836)
                      +....+.       .|....++++.+ +.++||||||..-..      |=    --|-|.++.-.|++.+.
T Consensus        84 ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~------~~----~~~~~~~~~~~~~~~~~  144 (357)
T PRK12652         84 IETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP------GG----TAPMLQPLERELARAGI  144 (357)
T ss_pred             eEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC------CC----CCcccchHHHHHHhcCC
Confidence            4433332       133333444443 367999999998654      21    13568888889998755

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=97.85  E-value=0.00013  Score=70.35  Aligned_cols=133  Identities=15%  Similarity=0.135  Sum_probs=86.9

Q ss_pred             cccEEEEEcc-CCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc-------c-------hhhhhhHHHHHHHHHhhc
Q 003256          627 FCYNVAVFFI-GGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE-------E-------EDDKCLDEVVMNDFMASN  691 (836)
Q Consensus       627 ~~~~I~v~f~-Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~-------~-------~~e~~~d~~~l~~~~~~~  691 (836)
                      ..++|+++.+ |.+..+.|+..|..++...+..++++++.+......       .       .......++.+++.+...
T Consensus         4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (154)
T COG0589           4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA   83 (154)
T ss_pred             ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3579999999 999999999999999999999999888886532211       0       111233345555555443


Q ss_pred             CCCCCEEEEEEEcCChHHH-HHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEE
Q 003256          692 FGNPNVVCRRIDANDSNQL-VNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVL  769 (836)
Q Consensus       692 ~~~~~v~y~e~~v~~g~~~-~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvL  769 (836)
                      ...+ +...+..+..|... .+.+... ..++||++||++++.      ++.+    -.||...+.++.    .++++||
T Consensus        84 ~~~~-~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~------~l~~----~llGsvs~~v~~----~~~~pVl  148 (154)
T COG0589          84 EAAG-VPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRS------GLSR----LLLGSVAEKVLR----HAPCPVL  148 (154)
T ss_pred             HHcC-CCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCc------cccc----eeeehhHHHHHh----cCCCCEE
Confidence            2222 11112222233332 2222222 247999999998765      5544    379999999996    5899999


Q ss_pred             EEeec
Q 003256          770 VIQSV  774 (836)
Q Consensus       770 vvqq~  774 (836)
                      |++..
T Consensus       149 vv~~~  153 (154)
T COG0589         149 VVRSE  153 (154)
T ss_pred             EEccC
Confidence            99864

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=97.78  E-value=0.027  Score=63.27  Aligned_cols=316  Identities=16%  Similarity=0.118  Sum_probs=161.0

Q ss_pred             CCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHH
Q 003256           73 KQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIV  152 (836)
Q Consensus        73 ~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~  152 (836)
                      .+|.++-.++.|+++..  +|.++       ++...+..+.+.+..+-+-+++.=++.|+++++|.++|.+.. +..-.+
T Consensus        24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~   93 (378)
T PF05684_consen   24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV   93 (378)
T ss_pred             hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence            37888888889999887  55541       122457788888888888888888899999999988887543 333345


Q ss_pred             HHHHHHHHHHHhhccc-cccchHHHHHHHhhccc-----c-HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-
Q 003256          153 PLLISLLVGHREQYKI-PRIHDQGISISFVASKC-----A-YPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-  224 (836)
Q Consensus       153 p~~lg~~~~~~l~~~~-~~~~~~sl~lg~~ls~T-----s-~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-  224 (836)
                      ..++|..+++++.... .+   +..-++.+++.|     . +..+...   ++.   + ..+.-+....|.++.-+.+. 
T Consensus        94 g~viG~~va~~l~~~~l~~---~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~---~-~~~~~a~~aaDnv~~~~~~~~  163 (378)
T PF05684_consen   94 GTVIGAVVAFLLFGGFLGP---EGWKIAGMLAGSYIGGSVNFVAVAEA---LGV---S-DSLFAAALAADNVVMALWFAF  163 (378)
T ss_pred             HHHHHHHHHHHHHhhcccc---hHHHHHHHHHhcccCchhHHHHHHHH---HCC---C-HHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666655433 21   221122222221     1 2222222   232   1 23333333344444444443 


Q ss_pred             HHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCchHHHHHHHHHHHHHHHHHH----Hh---
Q 003256          225 MAPLSKAKYR-SVAIRIELSLCAMSLFTFLVLWPTIQWIIRR--IPERKPVKDFYIVAILTGALVMAVACD----SM---  294 (836)
Q Consensus       225 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r--~~~~~~~~e~~~~~il~~~l~~~~iae----~~---  294 (836)
                      +..+...... ......--...          ...-....+.  ..++++.. ..+...+.+.+....+++    ++   
T Consensus       164 l~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~la~~l~~~  232 (378)
T PF05684_consen  164 LLALPPFARKFDRWTKADTSSI----------EALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHALAAWLPPL  232 (378)
T ss_pred             HHHHhhhhHHhhhccCCCcccc----------chhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322210000 00000000000          0000000000  00111111 223334444443333333    33   


Q ss_pred             --ch----hHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Q 003256          295 --RV----NYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGK  368 (836)
Q Consensus       295 --G~----~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K  368 (836)
                        +.    -.++-....|++.... |..+.+ .--+.+ ..+++-+||+.+|+..|+..+.+ ..+  .+++.++.+..-
T Consensus       233 ~~~~~~~~~~il~~tt~~l~~~~~-~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~-ap~--~~l~~~i~l~iH  306 (378)
T PF05684_consen  233 FAGISSSTWLILTVTTLGLATSFP-PFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLD-APS--LFLFGFIILAIH  306 (378)
T ss_pred             HhhccccHHHHHHHHHHHHHHhcc-chhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHH-hHH--HHHHHHHHHHHH
Confidence              11    1233344555555433 444433 233343 56788899999999999988863 222  223334445667


Q ss_pred             HHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHH
Q 003256          369 VVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNL  426 (836)
Q Consensus       369 ~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~l  426 (836)
                      .+..+..++++|.++.+...-+- =|.-|.........++...++.+.+...++-+++
T Consensus       307 ~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~pgvL~gvlGyai  363 (378)
T PF05684_consen  307 LLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPPGVLMGVLGYAI  363 (378)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            88888899999999977655544 4667776666666666655555555444444433

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=97.71  E-value=0.0063  Score=65.34  Aligned_cols=254  Identities=17%  Similarity=0.160  Sum_probs=139.5

Q ss_pred             HHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhcc
Q 003256          119 GIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELK  198 (836)
Q Consensus       119 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~  198 (836)
                      +..++|-.|-++|++...+..||...+-+.-++++++++.+++.+++..... .-..+.+-.+++.|--..=..+..|.+
T Consensus        51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~-Gls~laiiaa~~~~Ng~ly~al~~~yG  129 (312)
T PRK12460         51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIF-GLSGLAIVAAMSNSNGGLYAALMGEFG  129 (312)
T ss_pred             HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccccc-chHHHHHHHHHhcCcHHHHHHHHHHcC
Confidence            4578899999999999988888988888888999999999998888744221 011367777777777666667777777


Q ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHH
Q 003256          199 LLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIV  278 (836)
Q Consensus       199 l~~s~~g~l~ls~a~v~Di~~~~ll~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~  278 (836)
                       -++|.|-..+  ..++|.=                   +   +..+.+..  .        ++ .+.|    .   .  
T Consensus       130 -~~~d~gA~~~--~sl~~GP-------------------f---~tm~aLga--~--------gL-A~ip----~---~--  164 (312)
T PRK12460        130 -DERDVGAISI--LSLNDGP-------------------F---FTMLALGA--A--------GL-ANIP----I---M--  164 (312)
T ss_pred             -CHhhhhHHhh--hhhccCc-------------------H---HHHHHHHH--H--------HH-hcCC----h---H--
Confidence             2445543221  1122211                   1   11111110  0        00 0011    0   0  


Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Q 003256          279 AILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALE  358 (836)
Q Consensus       279 ~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~  358 (836)
                      ..+                +.+=+++.|+++.|..+   ++.+.+++- ..+.+|+|-+..|.++|++.+.+ ..+. .+
T Consensus       165 ~lv----------------~lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~-~G~~-GI  222 (312)
T PRK12460        165 ALV----------------AALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQ-AGLA-GI  222 (312)
T ss_pred             HHH----------------HHHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHH-hChH-HH
Confidence            000                02234577778777532   233444442 44589999999999999988852 2222 22


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH--HHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHH-
Q 003256          359 LIIMAAYIGKVVASILATTCFRTSFRNALLFS--CFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPL-  435 (836)
Q Consensus       359 ~ii~~~~~~K~~~~~l~~~~~~~~~real~lg--~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~pl-  435 (836)
                      ++.++..+.-+..+++..|++|.+.+-+..+|  ..-+.=|...++-+.-.+  +-. .+.-++.+.+.++.|.+..|+ 
T Consensus       223 lL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~--~~~-~~~Ataqvaa~vivTail~P~~  299 (312)
T PRK12460        223 LLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSL--APV-AAAATAQVAASVIVTAILTPLL  299 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhH--HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            22222333445555666688888888777776  332222222222222111  111 123344444455555555555 


Q ss_pred             HHHhcccc
Q 003256          436 ISVYYNPQ  443 (836)
Q Consensus       436 v~~l~~p~  443 (836)
                      ..|++|+.
T Consensus       300 t~~~~k~~  307 (312)
T PRK12460        300 TSWVAKKE  307 (312)
T ss_pred             HHHHHHHh
Confidence            55666543

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=97.39  E-value=0.0013  Score=73.13  Aligned_cols=132  Identities=15%  Similarity=0.101  Sum_probs=81.9

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhc---
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEG---  539 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~---  539 (836)
                      -|||+|++.+++...+++-+..++...+...+++++|+++.....    ...+.     .....+++++..++..+.   
T Consensus         6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~----~~~~~-----~~~~~eelle~~~~~~~~~l~   76 (357)
T PRK12652          6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVD----PEGQD-----ELAAAEELLERVEVWATEDLG   76 (357)
T ss_pred             CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccc----cchhH-----HHHHHHHHHHHHHHHHHHhhh
Confidence            489999999999999999988887542235799999999743111    01000     011123334333333221   


Q ss_pred             -CCCceeEEEEEEEc-----CCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcce
Q 003256          540 -SNDAVTIQPFIMIS-----QYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTV  607 (836)
Q Consensus       540 -~~~~v~v~~~t~vs-----~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsV  607 (836)
                       ...++.++..+...     ..++.++.|+++|++.++|+|||+-.-+-|..   ..+++.+- .=|.++-|.+
T Consensus        77 ~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~---~~~~~~~~-~~~~~~~~~~  146 (357)
T PRK12652         77 DDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGT---APMLQPLE-RELARAGITY  146 (357)
T ss_pred             cccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCC---CcccchHH-HHHHhcCCce
Confidence             12467777666542     12689999999999999999999987663332   22444443 3355565553

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=97.30  E-value=0.015  Score=62.24  Aligned_cols=88  Identities=17%  Similarity=0.124  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhcccccc----chHHHHHHHhhccccHHHHHH
Q 003256          117 IGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRI----HDQGISISFVASKCAYPVLVD  192 (836)
Q Consensus       117 iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~----~~~sl~lg~~ls~Ts~~vv~~  192 (836)
                      .-+..++|-.|-++|++...+..||...+-+.-+++.++++.+++.+++.....+    .-..+.+-++++.+-...=..
T Consensus        49 ~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~a  128 (314)
T PF03812_consen   49 PIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLA  128 (314)
T ss_pred             HHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHH
Confidence            3455788999999999999999999998889999999999999998887542100    012366777777777666667


Q ss_pred             HHHhccccCChhH
Q 003256          193 AISELKLLNSELG  205 (836)
Q Consensus       193 iL~el~l~~s~~g  205 (836)
                      +..|.+- ++|.|
T Consensus       129 L~~~yGd-~~D~g  140 (314)
T PF03812_consen  129 LMGQYGD-EEDVG  140 (314)
T ss_pred             HHHHhCC-HHHhH
Confidence            7777762 44443

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=97.22  E-value=0.079  Score=58.37  Aligned_cols=123  Identities=10%  Similarity=0.152  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHhc-----hhHHHHHHHHHhhccCCCCc--hhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Q 003256          283 GALVMAVACDSMR-----VNYTIGAAMLGIVIPAGPPL--GSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFA  355 (836)
Q Consensus       283 ~~l~~~~iae~~G-----~~~~lGaf~aGl~i~~~~~~--~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~  355 (836)
                      .+.+..++.++++     +....++++.|+++.+--+.  ..++.++.-+.+.++-+-+|.++.=|++.+..+.+ -...
T Consensus       230 ~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lp  308 (404)
T COG0786         230 CLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALP  308 (404)
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cccc
Confidence            3344556666665     57889999999999876322  12234444444567778888777778888777651 2223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhh-hhhhHHHHHHhh
Q 003256          356 ALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVN-IKGVSELVTFLR  406 (836)
Q Consensus       356 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~-~rG~v~l~~~~~  406 (836)
                      ..+++.+-..+.-+.+.+...|..|.++..+..-+.-++ .-|...-++++.
T Consensus       309 l~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM  360 (404)
T COG0786         309 LLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM  360 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence            333444444445566677777888888877766444333 345566666665

>TIGR00698 conserved hypothetical integral membrane protein

Probab=97.21  E-value=0.23  Score=54.73  Aligned_cols=89  Identities=10%  Similarity=0.110  Sum_probs=58.9

Q ss_pred             hcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHH
Q 003256           69 LRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLT  148 (836)
Q Consensus        69 l~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~  148 (836)
                      ++..+++..+--++.|+++|+......+.   ..-| ...-.-+.+-++|++    +.|.+++++++.+.+.+.+.+...
T Consensus        26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~-Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~   97 (335)
T TIGR00698        26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKR-GVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTL   97 (335)
T ss_pred             hccCCCcHHHHHHHHHHHHhccccccchh---hccc-hHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHH
Confidence            35568999999999999999854211111   1111 011233456677766    569999999999999988877776


Q ss_pred             HHHHHHHHHHHHH-HHhh
Q 003256          149 VFIVPLLISLLVG-HREQ  165 (836)
Q Consensus       149 ~~l~p~~lg~~~~-~~l~  165 (836)
                      .+...+.+++.++ ..++
T Consensus        98 ~v~~~~~~~~~~g~k~l~  115 (335)
T TIGR00698        98 ILTSTFFLTVFLGSSRLK  115 (335)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            6666666666665 3554

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=97.10  E-value=0.18  Score=56.63  Aligned_cols=89  Identities=12%  Similarity=0.247  Sum_probs=51.8

Q ss_pred             chhHHHHHHHHHhhccCCCC------chhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH-HHHHHHHH
Q 003256          295 RVNYTIGAAMLGIVIPAGPP------LGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALEL-IIMAAYIG  367 (836)
Q Consensus       295 G~~~~lGaf~aGl~i~~~~~------~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~-ii~~~~~~  367 (836)
                      .+...+++++.|+++.+..+      ..++..+++    .++.+-+|.+..=+.+++..+.  +.+...++ +++-.++.
T Consensus       246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~--~~a~Plliil~~q~i~~  319 (368)
T PF03616_consen  246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLA--DYALPLLIILAVQTILM  319 (368)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHHHHHHHHH
Confidence            34678999999999986421      223333333    5555556656666778887776  22332333 33333334


Q ss_pred             HHHHHHHHHhhcCCChHHHHHHH
Q 003256          368 KVVASILATTCFRTSFRNALLFS  390 (836)
Q Consensus       368 K~~~~~l~~~~~~~~~real~lg  390 (836)
                      =+...++..+..|.++ |+..++
T Consensus       320 ~~f~~fv~fr~~gkdy-daavm~  341 (368)
T PF03616_consen  320 VLFAYFVTFRVMGKDY-DAAVMS  341 (368)
T ss_pred             HHHHHHHhhhhhCCCh-hHHHHh
Confidence            4455666777888887 555543

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=96.63  E-value=1.5  Score=48.30  Aligned_cols=331  Identities=15%  Similarity=0.146  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCh--hHH-HHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhh
Q 003256           51 VMLQVSLAFSISQILYILLRPLKQPK--FVS-NTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINT  127 (836)
Q Consensus        51 ~llqi~lil~~s~l~~~ll~rl~~P~--iv~-~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~G  127 (836)
                      ...|.++.+.++.+.++++..+++|.  ..| -+++|++.+-.... ++      .|       ..+-.+|.+.+=-.+|
T Consensus         7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-l~------~P-------~~l~~~~q~ilG~~ig   72 (352)
T COG3180           7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-LP------LP-------RGLFKAGQVILGIMIG   72 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-cc------CC-------hHHHHHHHHHHHHHHh
Confidence            46788889999999999999988764  455 56666666621111 11      12       2344556666667888


Q ss_pred             hccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHH
Q 003256          128 VKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQL  207 (836)
Q Consensus       128 le~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l  207 (836)
                      ..+..+.+.. .++-+.+.....+++...+...+|++......+...+ ++|.  ++-.......+-+|.| .+.+.-.+
T Consensus        73 ~~~t~s~l~~-l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta-~~gs--~PGgas~m~~iA~d~g-Ad~~~VAl  147 (352)
T COG3180          73 ASLTPSVLDT-LKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA-FLGS--SPGGASAMVSIAQDYG-ADLRLVAL  147 (352)
T ss_pred             hhcCHHHHHH-HHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh-hHhc--CCchHHHHHHHHHHhC-CChhHHHH
Confidence            8888876643 3333333344444555555555555543322111112 1211  1111122222224444 23222111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCCchHHHHHHH
Q 003256          208 AISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPER------KPVKDFYIVAIL  281 (836)
Q Consensus       208 ~ls~a~v~Di~~~~ll~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~------~~~~e~~~~~il  281 (836)
                      ..+.                           +.    +.++..+-++.+....  -++..+.      .+.....+.+.+
T Consensus       148 ~Q~l---------------------------Rv----l~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~~~l~  194 (352)
T COG3180         148 MQYL---------------------------RV----LFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLILLLLI  194 (352)
T ss_pred             HHHH---------------------------HH----HHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHHHHHH
Confidence            1111                           10    0011111112111111  0000000      011111133444


Q ss_pred             HHHHHHHHHHHHhch--hHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH-HHHHH
Q 003256          282 TGALVMAVACDSMRV--NYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRA-FAALE  358 (836)
Q Consensus       282 ~~~l~~~~iae~~G~--~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~-~~~~~  358 (836)
                      ...++.+.+...+++  ...+|+++.|..+.-.....-++-+-+.    .+-.-+.-..+|.++|-..+..... ....+
T Consensus       195 ~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~  270 (352)
T COG3180         195 LAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILREAKRLLPAIL  270 (352)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHHhHhhcchHH
Confidence            444555555555555  3567888888777765322222222121    2222244567788888766642222 22233


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHH
Q 003256          359 LIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISV  438 (836)
Q Consensus       359 ~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~  438 (836)
                      +.++..++.-....++..++.+.++.+++ +|  ..|-|.-+++....+.+..  .+.+-+.=++=.++...+.|++.|+
T Consensus       271 v~ii~l~~~~~~~a~ll~~~~~i~~~ta~-La--~sPGGl~~ma~~A~~l~ad--~a~V~a~q~lRll~il~i~p~l~r~  345 (352)
T COG3180         271 VSIIALMAIAAGMAGLLSWLTGIDLNTAY-LA--TSPGGLDTMAAIAAALGAD--PAFVMALQVLRLLFILLLGPALARF  345 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HH--cCCCcHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555666777777888899998764 33  4788888887766555422  1111111112222223344777777


Q ss_pred             hccc
Q 003256          439 YYNP  442 (836)
Q Consensus       439 l~~p  442 (836)
                      +.+.
T Consensus       346 l~~~  349 (352)
T COG3180         346 LSKR  349 (352)
T ss_pred             HHHH
Confidence            6543

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=96.58  E-value=0.54  Score=51.05  Aligned_cols=147  Identities=13%  Similarity=0.125  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHH----HHHHHHhhccccccchHHHHHHHhhccccH
Q 003256          112 QAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLIS----LLVGHREQYKIPRIHDQGISISFVASKCAY  187 (836)
Q Consensus       112 ~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg----~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~  187 (836)
                      +.--.+|+.+.|+=.=+++|.+++++..++.-.+ +.+..+-|+++    +++++++....+     ....|.++-.-+ 
T Consensus        50 sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nwii~P~lm~~la~~fl~~~p-----ey~~GlILlglA-  122 (342)
T COG0798          50 SIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNWIIGPLLMFALAWFFLPDEP-----EYRAGLILLGLA-  122 (342)
T ss_pred             ehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHhh-
Confidence            3345578888888888899999998766654322 22333444433    333333332211     222333222222 


Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          188 PVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYR-SVAIRIELSLCAMSLFTFLVLWPTIQWIIRR  265 (836)
Q Consensus       188 ~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r  265 (836)
                      |.++-++-=.++.+.+. ..++..-.+||++.+++++ .....-+..+ ...++.++..++..+.+-++.+.+.+++..|
T Consensus       123 pC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k  201 (342)
T COG0798         123 PCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIK  201 (342)
T ss_pred             hhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222223333332 3455666789999998887 4332211111 2234444444444444445555555555555


Q ss_pred             c
Q 003256          266 I  266 (836)
Q Consensus       266 ~  266 (836)
                      .
T Consensus       202 ~  202 (342)
T COG0798         202 K  202 (342)
T ss_pred             h
Confidence            3

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=96.53  E-value=1.3  Score=48.14  Aligned_cols=144  Identities=13%  Similarity=0.145  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCcchhhhccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhh----
Q 003256          110 FAQAASTIGGIYFVFINTVKMDKGMIPRTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVA----  182 (836)
Q Consensus       110 ~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~l----  182 (836)
                      .++..-.+.+.++||..|+.+..+++++..++.   ......++++-=.++++++..+.  ..    ..+..|..+    
T Consensus        35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l~----~~l~~Gl~ll~~~  108 (319)
T COG0385          35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--LP----PELAVGLLLLGCC  108 (319)
T ss_pred             hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--CC----HHHHHhHHheeeC
Confidence            333345788999999999999999987654443   33334444444445556555554  11    223333333    


Q ss_pred             -ccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhh-cccc--h-hHHHHHHHHHHHHHHHHHHHHH
Q 003256          183 -SKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLS-KAKY--R-SVAIRIELSLCAMSLFTFLVLW  256 (836)
Q Consensus       183 -s~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~-~~~~--~-~~~~~~~~~~v~~~~~~~~v~r  256 (836)
                       +.|+. .+...+.     +.+ --++++.+.++.+++.++.- ...+. ++..  + +..++.++..++.-++.+.+.|
T Consensus       109 Pggv~S-~~~t~lA-----kGn-ValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r  181 (319)
T COG0385         109 PGGVAS-NAMTYLA-----KGN-VALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLR  181 (319)
T ss_pred             CCchhH-HHHHHHh-----cCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence             33333 3333322     222 24567777888888887765 43332 2211  1 4455666666667777788888


Q ss_pred             HHHHHHHHHc
Q 003256          257 PTIQWIIRRI  266 (836)
Q Consensus       257 ~~~~~i~~r~  266 (836)
                      +......++.
T Consensus       182 ~~~~~~~~~~  191 (319)
T COG0385         182 PLLPKWVERL  191 (319)
T ss_pred             HHHHHHHHHH
Confidence            8887666664

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=96.53  E-value=0.79  Score=51.94  Aligned_cols=92  Identities=10%  Similarity=0.197  Sum_probs=57.2

Q ss_pred             chhHHHHHHHHHhhccCCCCch--hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH-HH
Q 003256          295 RVNYTIGAAMLGIVIPAGPPLG--SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKV-VA  371 (836)
Q Consensus       295 G~~~~lGaf~aGl~i~~~~~~~--~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~-~~  371 (836)
                      .+...++|++.|+++.+.-+..  .++.++.-+.+.++.+-+|.+..=+.+++..+.  +.+...+++++..++.-+ ..
T Consensus       244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~--~~a~Plliil~~q~i~~~l~~  321 (398)
T TIGR00210       244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELA--DLAGPIALILLVQVMFMALYA  321 (398)
T ss_pred             CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999998753211  123333444456777777877777888988876  344444444444444333 45


Q ss_pred             HHHHHhhcCCChHHHHHH
Q 003256          372 SILATTCFRTSFRNALLF  389 (836)
Q Consensus       372 ~~l~~~~~~~~~real~l  389 (836)
                      .++.-+..+.+ .|+-.+
T Consensus       322 ~fv~fr~mg~~-ydaaV~  338 (398)
T TIGR00210       322 IFVTFRLMGKD-YDAAVL  338 (398)
T ss_pred             HHHhHHhccch-HHHHHH
Confidence            56666777766 666654

>PRK10490 sensor protein KdpD; Provisional

Probab=96.52  E-value=0.017  Score=72.68  Aligned_cols=123  Identities=8%  Similarity=0.019  Sum_probs=84.7

Q ss_pred             ccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcC
Q 003256          461 SELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGS  540 (836)
Q Consensus       461 ~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~  540 (836)
                      ..-|||||++...+...+++-+..++...  ....+++|+.+...+.  .           .....+++.+.++ +.+..
T Consensus       249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~--~a~~~~l~V~~~~~~~--~-----------~~~~~~~l~~~~~-lA~~l  312 (895)
T PRK10490        249 TRDAILLCIGHNTGSEKLVRTAARLAARL--GSVWHAVYVETPRLHR--L-----------PEKKRRAILSALR-LAQEL  312 (895)
T ss_pred             cCCeEEEEECCCcchHHHHHHHHHHHHhc--CCCEEEEEEecCCcCc--C-----------CHHHHHHHHHHHH-HHHHc
Confidence            45689999999999999999988888653  5688999975321110  0           1112345555554 43333


Q ss_pred             CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCC-cceEEE
Q 003256          541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAP-CTVGIF  610 (836)
Q Consensus       541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~Ap-CsVgIl  610 (836)
                      .+.  +...    ..+++++.|.++|++++++.||||-+++.+.     -..||+.+++++++| -+|-|+
T Consensus       313 Ga~--~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~-----~~~~s~~~~l~r~~~~idi~iv  372 (895)
T PRK10490        313 GAE--TATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW-----WRRESFADRLARLGPDLDLVIV  372 (895)
T ss_pred             CCE--EEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC-----ccCCCHHHHHHHhCCCCCEEEE
Confidence            332  2222    2468999999999999999999998866332     124699999999997 566554

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=96.36  E-value=0.34  Score=52.93  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=68.3

Q ss_pred             cccCCChhHHHHhhhceeccccccccccccccccCCCchH-HHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHH
Q 003256           70 RPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMV-FAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLT  148 (836)
Q Consensus        70 ~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~-~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~  148 (836)
                      ....++..+--++.|+++|+..++..+.+.    |  ... .-+.+-++|++    +.|.++++.++.+.+.+.+.+...
T Consensus        22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~~----~--Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~   91 (305)
T PF03601_consen   22 FLPGLGALLIAILLGMLIGNLFFGLPARFK----P--GIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIII   91 (305)
T ss_pred             cccCccHHHHHHHHHHHHhhhccCCcHHHH----h--HHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHH
Confidence            346788999999999999973344322111    1  122 23466677766    568999999999999988888887


Q ss_pred             HHHHHHHHHHHHH-HHhhccccccchHHHHHHHhhcccc
Q 003256          149 VFIVPLLISLLVG-HREQYKIPRIHDQGISISFVASKCA  186 (836)
Q Consensus       149 ~~l~p~~lg~~~~-~~l~~~~~~~~~~sl~lg~~ls~Ts  186 (836)
                      .+...+.+++.++ ..++.+..    .+.+++.-.++..
T Consensus        92 ~v~~~~~~~~~lg~r~~~l~~~----~~~Lia~GtsICG  126 (305)
T PF03601_consen   92 VVILTFLLTYWLGRRLFGLDRK----LAILIAAGTSICG  126 (305)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHH----HHHHHHhhcccch
Confidence            7777777777766 55554322    3455555555533

; GO: 0016021 integral to membrane

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=96.27  E-value=0.73  Score=51.83  Aligned_cols=125  Identities=11%  Similarity=0.092  Sum_probs=74.7

Q ss_pred             HHHHHhchhHHHHHHHHHhhccCCCCchhhH---HHHHHHHHHHHHHHHHHHHhhcc-ccccccchhhHHHHHHHHHHHH
Q 003256          289 VACDSMRVNYTIGAAMLGIVIPAGPPLGSAL---VEKSEAILSNFFLPFFYIHVGQQ-IDIYSINNWRAFAALELIIMAA  364 (836)
Q Consensus       289 ~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l---~~kl~~~~~~~flPlFF~~~Gl~-idl~~l~~~~~~~~~~~ii~~~  364 (836)
                      .+...+++|...-..++=.++.-..-..+++   .++...+...-+.+...+-+|+. +|++.+.+.-++. .+++++..
T Consensus       264 ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~  342 (414)
T PF03390_consen  264 LLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLAT  342 (414)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHH
Confidence            3444566666655544444443332222333   33444555555556666667888 8888775333443 34445556


Q ss_pred             HHHHHHHHHHHHhhcCCChHHHHH-HHHHhhhh-hhHHHHHHhhhhhccccc
Q 003256          365 YIGKVVASILATTCFRTSFRNALL-FSCFVNIK-GVSELVTFLRWRQRELID  414 (836)
Q Consensus       365 ~~~K~~~~~l~~~~~~~~~real~-lg~~m~~r-G~v~l~~~~~~~~~~ii~  414 (836)
                      .++-.++.++.+++.|+-+-|+-. .|+.|+.+ |.-++++.+.+...+++.
T Consensus       343 Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp  394 (414)
T PF03390_consen  343 VLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP  394 (414)
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence            677888899999999986666555 56567544 556777777776666543

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=96.22  E-value=0.21  Score=53.36  Aligned_cols=86  Identities=8%  Similarity=0.084  Sum_probs=60.2

Q ss_pred             HHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhcccccc---chH-HHHHHHhhccccHHHHHHHH
Q 003256          119 GIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRI---HDQ-GISISFVASKCAYPVLVDAI  194 (836)
Q Consensus       119 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~---~~~-sl~lg~~ls~Ts~~vv~~iL  194 (836)
                      +..++|-.|-++|++...+..||...+-+.-++++++++.+++.+++......   ... .+.+-.+++.|--..=..+.
T Consensus        51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~  130 (314)
T TIGR00793        51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM  130 (314)
T ss_pred             HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence            45788999999999998888888888888889999999999998887543100   011 25666666666655555666


Q ss_pred             HhccccCChhH
Q 003256          195 SELKLLNSELG  205 (836)
Q Consensus       195 ~el~l~~s~~g  205 (836)
                      .|.+ -++|.|
T Consensus       131 ~qyG-d~~D~g  140 (314)
T TIGR00793       131 QQYG-TKEEAG  140 (314)
T ss_pred             HHcC-CHhhhh
Confidence            6666 234444

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.20  E-value=0.17  Score=61.04  Aligned_cols=116  Identities=13%  Similarity=0.062  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCC-CCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Q 003256          277 IVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAG-PPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFA  355 (836)
Q Consensus       277 ~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~-~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~  355 (836)
                      +.+.++.+.++..++..+|++.++|=.++|+++... ..+-.. .+.++.+ .++-+.++...+|+.+|+..+...  ..
T Consensus        10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~--~~   85 (621)
T PRK03562         10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHF-AEFGVVLMLFVIGLELDPQRLWKL--RR   85 (621)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH--HH
Confidence            344555666777888899999999999999999642 111111 2334444 556666777778999999887521  11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhh
Q 003256          356 ALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIK  396 (836)
Q Consensus       356 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~r  396 (836)
                      .++.+-...++.-++..+..+.+.+.+|..++.+|..+..-
T Consensus        86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~S  126 (621)
T PRK03562         86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALS  126 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            11111111122222333445567789999999998877543

>PRK10490 sensor protein KdpD; Provisional

Probab=96.06  E-value=0.029  Score=70.50  Aligned_cols=123  Identities=8%  Similarity=0.060  Sum_probs=83.4

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCCh
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDS  707 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g  707 (836)
                      ..||+|...|+|.++..++.|.|||+..++++++++|.++.....++.+++.-.+.+ ++.+++.  ..  +...   .+
T Consensus       250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~-~lA~~lG--a~--~~~~---~~  321 (895)
T PRK10490        250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSAL-RLAQELG--AE--TATL---SD  321 (895)
T ss_pred             CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHH-HHHHHcC--CE--EEEE---eC
Confidence            468999999999999999999999999999999999987643222222222222334 3555542  22  2222   23


Q ss_pred             HHHHHHHHhcc--cCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEee
Q 003256          708 NQLVNAFRSLV--SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQS  773 (836)
Q Consensus       708 ~~~~~~i~~~~--~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq  773 (836)
                      .++.+.|.+.+  .+.+.||||++++.      +   |  . --|.+.|.|...   ..+.-|.||-.
T Consensus       322 ~dva~~i~~~A~~~~vt~IViG~s~~~------~---~--~-~~~s~~~~l~r~---~~~idi~iv~~  374 (895)
T PRK10490        322 PAEEKAVLRYAREHNLGKIIIGRRASR------R---W--W-RRESFADRLARL---GPDLDLVIVAL  374 (895)
T ss_pred             CCHHHHHHHHHHHhCCCEEEECCCCCC------C---C--c-cCCCHHHHHHHh---CCCCCEEEEeC
Confidence            44555555443  66899999999875      2   4  1 247899999986   55678888853

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=95.99  E-value=0.23  Score=53.40  Aligned_cols=129  Identities=14%  Similarity=0.206  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchh-hHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 003256          283 GALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGS-ALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELII  361 (836)
Q Consensus       283 ~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~-~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii  361 (836)
                      .....+.+++.++++.++|-.++|+++.... ++. .-.+.++.+ ..+-+.++....|+++|++.+.+  .+.....+.
T Consensus         3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~--~~~~~~~~~   78 (273)
T TIGR00932         3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWK--LRKAAFGVG   78 (273)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHH
Confidence            3455678889999999999999999997531 110 111234444 45556667777899999988762  222222222


Q ss_pred             HHHHHHH-HHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhh
Q 003256          362 MAAYIGK-VVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQT  417 (836)
Q Consensus       362 ~~~~~~K-~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~  417 (836)
                      ...++.- ++..+...++.+.++.+++.+|..+.+-.  .-+++.+..|.+..+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~  133 (273)
T TIGR00932        79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPF  133 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChH
Confidence            2233333 34444556778999999999999887543  233444445555544333

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=95.82  E-value=2.2  Score=46.87  Aligned_cols=148  Identities=14%  Similarity=0.125  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHhhhccCcchhhhccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccc-cH
Q 003256          112 QAASTIGGIYFVFINTVKMDKGMIPRTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKC-AY  187 (836)
Q Consensus       112 ~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~T-s~  187 (836)
                      +....+++..++|..|+.++.+++++..++.   ...-...+++.=++++++...+...........+.+..++-.| +.
T Consensus        30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S  109 (313)
T PF13593_consen   30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSS  109 (313)
T ss_pred             hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhH
Confidence            3567788888889999999999998754443   3333333333333455555544322220000123333333322 22


Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhc-ccc-h---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          188 PVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLSK-AKY-R---SVAIRIELSLCAMSLFTFLVLWPTIQW  261 (836)
Q Consensus       188 ~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~-~~~-~---~~~~~~~~~~v~~~~~~~~v~r~~~~~  261 (836)
                      .++   +.+.-  +.+ -..++..+.++.++++++.- ...+.. +++ .   ...+..++..++.-++.+-+.|+...+
T Consensus       110 ~v~---~T~~A--gGN-~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~~~~~  183 (313)
T PF13593_consen  110 SVV---LTRLA--GGN-VALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRRWVPK  183 (313)
T ss_pred             HHH---HHHHc--CCC-HHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222   22222  222 24566777788888887765 333222 111 1   223333444444555556666665554


Q ss_pred             HHHH
Q 003256          262 IIRR  265 (836)
Q Consensus       262 i~~r  265 (836)
                      ..+|
T Consensus       184 ~~~~  187 (313)
T PF13593_consen  184 WVAR  187 (313)
T ss_pred             HHHH
Confidence            4444

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.81  E-value=0.33  Score=58.35  Aligned_cols=113  Identities=15%  Similarity=0.077  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-CchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHH
Q 003256          278 VAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP-PLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAA  356 (836)
Q Consensus       278 ~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~-~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~  356 (836)
                      .+.++.+.++..++..+|+++++|=.++|+++.... ..-.. .+.++.+ ..+-+.++...+|+++|+..+.+......
T Consensus        11 ~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~~~   88 (601)
T PRK03659         11 VLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQLRRSIF   88 (601)
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            344445556677888899999999999999986531 11111 1234444 45556666677899999988752221111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhh
Q 003256          357 LELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVN  394 (836)
Q Consensus       357 ~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~  394 (836)
                        .+....++.-++.......+.+++|..++.+|..+.
T Consensus        89 --~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la  124 (601)
T PRK03659         89 --GVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLA  124 (601)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence              111111111111222234456889999998887654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.81  E-value=0.31  Score=58.09  Aligned_cols=132  Identities=12%  Similarity=0.188  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-CchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Q 003256          280 ILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP-PLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALE  358 (836)
Q Consensus       280 il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~-~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~  358 (836)
                      ++..+++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|+..+.+....  ..
T Consensus        14 ~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~~~--~~   89 (558)
T PRK10669         14 GLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVKSI--AI   89 (558)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHhhH--HH
Confidence            3555666778888899999999999999996531 11111 1223333 455555666677999999887522211  11


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhh
Q 003256          359 LIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQT  417 (836)
Q Consensus       359 ~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~  417 (836)
                      ...+..++.=++.++......+.++.+++.+|..++.-..  .+++....+.|.++.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~  146 (558)
T PRK10669         90 PGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR  146 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence            1111112222333444456678999999999987765322  34455556666655533

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=95.74  E-value=4  Score=45.00  Aligned_cols=156  Identities=12%  Similarity=0.071  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHhch--hHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchh-hH
Q 003256          277 IVAILTGALVMAVACDSMRV--NYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNW-RA  353 (836)
Q Consensus       277 ~~~il~~~l~~~~iae~~G~--~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~-~~  353 (836)
                      ....+..+.+.+++.+.+++  ..++|+++.+.++.......-.+-+.+..    +..-+.-..+|.+++...+.+. ..
T Consensus       157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~----~aqv~iG~~iG~~f~~~~l~~~~~~  232 (318)
T PF05145_consen  157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVN----AAQVLIGASIGSRFTRETLRELRRL  232 (318)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHH----HHHHHHHHHHHccccHHHHHHHHHH
Confidence            44555566777788888877  46788888887776442211122222222    2222345678999998776532 23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHH
Q 003256          354 FAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVT  433 (836)
Q Consensus       354 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~  433 (836)
                      +...+...++.+..-.+..++..++.++++.+++. +  +.|-|.-|+.+.....+.+.---..+.++=+..+  -.+.|
T Consensus       233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L-a--~aPGGl~eM~l~A~~l~~d~~~V~~~q~~Rl~~v--~~~~p  307 (318)
T PF05145_consen  233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL-A--TAPGGLAEMALIALALGADVAFVAAHQVVRLLFV--LLLAP  307 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHH--HHHHH
Confidence            33344445555666778888888999999877643 3  5799999988876655543211122222212222  23466


Q ss_pred             HHHHHhcc
Q 003256          434 PLISVYYN  441 (836)
Q Consensus       434 plv~~l~~  441 (836)
                      ++.+++.|
T Consensus       308 ~~~r~~~r  315 (318)
T PF05145_consen  308 FIARWLRR  315 (318)
T ss_pred             HHHHHHHH
Confidence            67776654

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=95.55  E-value=0.73  Score=50.46  Aligned_cols=92  Identities=11%  Similarity=0.169  Sum_probs=56.2

Q ss_pred             HHHHHH-HHHHHHHHHHHHhhcc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH-HHHhhhhh
Q 003256          321 EKSEAI-LSNFFLPFFYIHVGQQ-IDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLF-SCFVNIKG  397 (836)
Q Consensus       321 ~kl~~~-~~~~flPlFF~~~Gl~-idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~l-g~~m~~rG  397 (836)
                      .++..| ...+.-|+.+. +|.. +|+..+.+.-+|.. +++.+...++-..+.++.+|+.|+-+-|+-.. |+.|+.+|
T Consensus       318 ~~l~~F~sk~~t~~Lm~g-iGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~G  395 (438)
T COG3493         318 KQLSQFFSKNLTWPLMAG-IGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMG  395 (438)
T ss_pred             HHHHHHHHHhhHHHHHHh-hhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCC
Confidence            344333 34555565544 4665 78776653344443 33344455677888999999999866666655 58887665


Q ss_pred             -hHHHHHHhhhhhccccc
Q 003256          398 -VSELVTFLRWRQRELID  414 (836)
Q Consensus       398 -~v~l~~~~~~~~~~ii~  414 (836)
                       .-++++.+.+-..++++
T Consensus       396 GtGDvaVLsAa~RM~Lmp  413 (438)
T COG3493         396 GTGDVAVLSAADRMELMP  413 (438)
T ss_pred             CCCchHHhhhcchhcccc
Confidence             45666666665555543

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=95.53  E-value=0.46  Score=51.91  Aligned_cols=164  Identities=13%  Similarity=0.095  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHH----HhchhHHHHHHHHHhhccC-CCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHH
Q 003256          280 ILTGALVMAVACD----SMRVNYTIGAAMLGIVIPA-GPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAF  354 (836)
Q Consensus       280 il~~~l~~~~iae----~~G~~~~lGaf~aGl~i~~-~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~  354 (836)
                      .+++.....++++    ..++++.+=|.+.|+++.| .....+...+-++. ....++.+=-+..|.++++..+.+ ..+
T Consensus         6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~-~~k~~Lr~gIVLlG~~l~~~~i~~-~G~   83 (305)
T PF03601_consen    6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKF-SSKKLLRLGIVLLGFRLSFSDILA-LGW   83 (305)
T ss_pred             HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHH-HHHHHHHHHHHHHCccccHHHHHH-hCc
Confidence            3334444444544    3678888889999999998 54444555554543 355778888889999999988762 223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhcc--ccchhhHHHHHHHHHHHHHhH
Q 003256          355 AALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRE--LIDVQTYSVLVLTNLAVTAIV  432 (836)
Q Consensus       355 ~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~--ii~~~~~~~~vl~~lv~t~i~  432 (836)
                      ......++..++.=.++.++..+.+|++.+.+..+|...+.=|...++...-..+.+  -+.-.+-.+.++.+ +..++.
T Consensus        84 ~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~-vam~~~  162 (305)
T PF03601_consen   84 KGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGT-VAMFLY  162 (305)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHH-HHHHHH
Confidence            222233333333344444555599999999999999988877776666655444332  12222222222222 223444


Q ss_pred             HHHHHHhccccchh
Q 003256          433 TPLISVYYNPQRRL  446 (836)
Q Consensus       433 ~plv~~l~~p~~~~  446 (836)
                      |.+.+++.-+...+
T Consensus       163 P~l~~~l~l~~~~~  176 (305)
T PF03601_consen  163 PLLGHALGLSPQQF  176 (305)
T ss_pred             HHHHHHhCCCHHHH
Confidence            55555555443333

; GO: 0016021 integral to membrane

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=95.49  E-value=0.19  Score=49.85  Aligned_cols=113  Identities=22%  Similarity=0.286  Sum_probs=76.4

Q ss_pred             cccCCChhHHHHhhhceeccccccc-cccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcch---hhhccchhhHH
Q 003256           70 RPLKQPKFVSNTLSGIILGPSFLGR-IKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGM---IPRTIKKTYSV  145 (836)
Q Consensus        70 ~rl~~P~iv~~IlaGillGPs~Lg~-~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~---l~~~~~~~~~i  145 (836)
                      +++++-...|-+++|+++|-  ++. .+.+    .   .....+.+.++|+.+|++.+|++--++.   +++.+.+...+
T Consensus        19 ~~~~LG~a~G~L~vgL~~G~--~~~~~~~~----~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~   89 (169)
T PF06826_consen   19 GGFSLGAAGGVLFVGLILGA--LGRTGPIF----L---PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLL   89 (169)
T ss_pred             cceeccccHHHHHHHHHHHH--hhhccCCC----C---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            55666777788899999885  332 1111    1   2456778999999999999999988764   45666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccchHHHHHH-HhhccccHHHHHHHHHh
Q 003256          146 SLTVFIVPLLISLLVGHREQYKIPRIHDQGISIS-FVASKCAYPVLVDAISE  196 (836)
Q Consensus       146 a~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg-~~ls~Ts~~vv~~iL~e  196 (836)
                      ++.-.++|.++++..++++.+..     .....| .+-+.|++|.+....+.
T Consensus        90 ~~~i~~~~~~~~~~~~~~~~~l~-----~~~~~G~~aGa~T~tp~L~~A~~~  136 (169)
T PF06826_consen   90 GVIITLVPLLIALVIGRYLFKLN-----PGIAAGILAGALTSTPALAAAQEA  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHccccCcHHHHHHHHh
Confidence            88777888888888777433221     223333 33466888888766544

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=95.45  E-value=0.57  Score=53.31  Aligned_cols=151  Identities=12%  Similarity=0.159  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccC-CCC---chhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhh
Q 003256          277 IVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPA-GPP---LGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWR  352 (836)
Q Consensus       277 ~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~-~~~---~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~  352 (836)
                      +..+++.+...+++.+.+|+++++|=.++|+++.+ +..   ..++..+-+..+    =.-++...+|+.+|+..+.+..
T Consensus        11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~~   86 (397)
T COG0475          11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKVG   86 (397)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHhc
Confidence            44555666677799999999999999999999997 211   223333334443    2333445679999998886222


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHhhcCCChHHHHHHHHHhhhhhhHHH-HHHhhhhhccccchhhHHHHHHHHHHHH
Q 003256          353 AFAALELIIMAAYIGKVVAS--ILATTCFRTSFRNALLFSCFVNIKGVSEL-VTFLRWRQRELIDVQTYSVLVLTNLAVT  429 (836)
Q Consensus       353 ~~~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~real~lg~~m~~rG~v~l-~~~~~~~~~~ii~~~~~~~~vl~~lv~t  429 (836)
                      ... ......+.+..=++..  +... +++.++.+++.+|..+..   .+. +.+.+..|.|...++.-..++.++++.=
T Consensus        87 ~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~---sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~D  161 (397)
T COG0475          87 RSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALAL---SSTAIVLKILMELGLLKTREGQLILGALVFDD  161 (397)
T ss_pred             hhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHH---HHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            221 2222222222222222  2222 589999999999987754   333 3344555666666665555544444444


Q ss_pred             HhHHHHH
Q 003256          430 AIVTPLI  436 (836)
Q Consensus       430 ~i~~plv  436 (836)
                      +..-|++
T Consensus       162 i~~i~lL  168 (397)
T COG0475         162 IAAILLL  168 (397)
T ss_pred             HHHHHHH
Confidence            3333333

>TIGR00930 2a30 K-Cl cotransporter

Probab=95.45  E-value=11  Score=47.78  Aligned_cols=102  Identities=5%  Similarity=0.052  Sum_probs=63.6

Q ss_pred             CCccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhh
Q 003256          459 PDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAE  538 (836)
Q Consensus       459 ~~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~  538 (836)
                      ++-.-++|+.+.+|++.+.+++++..+...+  . -..+.|+++-+.+.       .       ..+.++..+..+.+-+
T Consensus       572 knwrPqiLvl~~~p~~~~~Ll~f~~~l~~~~--g-l~i~~~v~~~~~~~-------~-------~~~~~~~~~~~~~~~~  634 (953)
T TIGR00930       572 KNWRPQCLVLTGPPVCRPALLDFASQFTKGK--G-LMICGSVIQGPRLE-------C-------VKEAQAAEAKIQTWLE  634 (953)
T ss_pred             cccCCeEEEEeCCCcCcHHHHHHHHHhccCC--c-EEEEEEEecCchhh-------h-------HHHHHHHHHHHHHHHH
Confidence            4556799999999999999999999997332  2 44566887632110       0       0011112222222212


Q ss_pred             cCCCceeEEEEEEEcCCcchHHHHHHHHHhc-----CCcEEEEecCCC
Q 003256          539 GSNDAVTIQPFIMISQYETMHESICKLVKDN-----CITLILLQFIPP  581 (836)
Q Consensus       539 ~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~-----~adlIi~~~h~~  581 (836)
                      .    -.++.|..+....++.+++-.+.+-.     +++.++|||...
T Consensus       635 ~----~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~  678 (953)
T TIGR00930       635 K----NKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKD  678 (953)
T ss_pred             H----hCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccc
Confidence            1    12334444444568999999998876     689999999853

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=95.40  E-value=1.2  Score=49.24  Aligned_cols=119  Identities=9%  Similarity=0.079  Sum_probs=76.9

Q ss_pred             chhHHHHHHHHHhhccCCCCchhhHHHHHHHH---HHHHHHHHHHHHhhcc-ccccccchhhHHHHHHHHHHHHHHHHHH
Q 003256          295 RVNYTIGAAMLGIVIPAGPPLGSALVEKSEAI---LSNFFLPFFYIHVGQQ-IDIYSINNWRAFAALELIIMAAYIGKVV  370 (836)
Q Consensus       295 G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~---~~~~flPlFF~~~Gl~-idl~~l~~~~~~~~~~~ii~~~~~~K~~  370 (836)
                      ++|+..-+.++|.++...+-..+++.++...+   ...-+.+..++-+|+. +|++.+.+.-++ ..+++++...++-.+
T Consensus       203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~-~~vviiv~~Vlg~ii  281 (347)
T TIGR00783       203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSW-QFVVICLSVVVAMIL  281 (347)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhch-hHhhhHHHHHHHHHH
Confidence            67888888899998887755666676665544   2222333334445665 777766522223 244555666778888


Q ss_pred             HHHHHHhhcCCChHHHHHH-HHHhhhh-hhHHHHHHhhhhhccccc
Q 003256          371 ASILATTCFRTSFRNALLF-SCFVNIK-GVSELVTFLRWRQRELID  414 (836)
Q Consensus       371 ~~~l~~~~~~~~~real~l-g~~m~~r-G~v~l~~~~~~~~~~ii~  414 (836)
                      ++++.+++.|+-+-|+-.. |+.|+.+ |.-++++.+.+...+++.
T Consensus       282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp  327 (347)
T TIGR00783       282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP  327 (347)
T ss_pred             HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence            9999999999866665554 6677654 556677777666655543

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>TIGR00832 acr3 arsenical-resistance protein

Probab=95.35  E-value=2.3  Score=47.04  Aligned_cols=99  Identities=12%  Similarity=0.141  Sum_probs=50.7

Q ss_pred             HHHHHHHHHhhhccCcchhhhccchhhHH---HHHHHH-HHHHHHHHHHHHhhccccccchHHHHHHHhhccccHH-HHH
Q 003256          117 IGGIYFVFINTVKMDKGMIPRTIKKTYSV---SLTVFI-VPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYP-VLV  191 (836)
Q Consensus       117 iGl~~llF~~Gle~d~~~l~~~~~~~~~i---a~~~~l-~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~-vv~  191 (836)
                      +++.++||-.|++++++++++..|+...+   -+.+++ .|+ ++++++..+.....     .+.+|..+..+.+. +.+
T Consensus        47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~~p-----~l~~GliLv~~~Pgg~~S  120 (328)
T TIGR00832        47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRDLF-----EYIAGLILLGLARCIAMV  120 (328)
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCCCH-----HHHHHHHHHHhcchHHHH
Confidence            45668999999999999998766554332   222332 333 45555554422111     23333333222211 223


Q ss_pred             HHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 003256          192 DAISELKLLNSELGQLAISSALLHEIVGLLRLL  224 (836)
Q Consensus       192 ~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~  224 (836)
                      .+++.+.  +.+.. ++++...++-+++.++.-
T Consensus       121 ~v~T~lA--kGnva-lsv~lt~~stLl~~~~~P  150 (328)
T TIGR00832       121 FVWNQLA--KGDPE-YTLVLVAVNSLFQVFLYA  150 (328)
T ss_pred             HHHHHHc--CCCHH-HHHHHHHHHHHHHHHHHH
Confidence            3334433  33332 455566677776665554

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=95.23  E-value=0.086  Score=53.43  Aligned_cols=126  Identities=19%  Similarity=0.260  Sum_probs=83.2

Q ss_pred             HHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcc-----hhhhccchhhHHHHHHHHH
Q 003256           78 VSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKG-----MIPRTIKKTYSVSLTVFIV  152 (836)
Q Consensus        78 v~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~-----~l~~~~~~~~~ia~~~~l~  152 (836)
                      ++.+++|+++|-.....             ....+...+..+.+++|.+|+++--+     .+++.+++++.+.+...+-
T Consensus         2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG   68 (191)
T PF03956_consen    2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG   68 (191)
T ss_pred             eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34567888888532211             11225678889999999999998654     4666778999999988888


Q ss_pred             HHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 003256          153 PLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL  224 (836)
Q Consensus       153 p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~  224 (836)
                      +++.+.+++.++.....    +++.++.-+.-  +.....++.|++  +.++|.++.=+=++-+++++++.-
T Consensus        69 Sllgg~l~~~ll~~~~~----~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P  132 (191)
T PF03956_consen   69 SLLGGLLASLLLGLSLK----ESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIP  132 (191)
T ss_pred             HHHHHHHHHHHhcCCHH----HHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888877754433    33444433322  223334455543  668888877777777777766554

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=95.14  E-value=0.73  Score=50.68  Aligned_cols=47  Identities=21%  Similarity=0.263  Sum_probs=38.6

Q ss_pred             HHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003256          120 IYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQY  166 (836)
Q Consensus       120 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~  166 (836)
                      ..++|-.|-.+|++...+..||...+.+.-+.+.++++..++.+++.
T Consensus        54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~  100 (326)
T PRK05274         54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE  100 (326)
T ss_pred             HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence            37889999999999988888888888777788888888777766654

>COG2855 Predicted membrane protein [Function unknown]

Probab=94.86  E-value=0.3  Score=53.08  Aligned_cols=117  Identities=15%  Similarity=0.094  Sum_probs=81.7

Q ss_pred             HHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Q 003256          290 ACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKV  369 (836)
Q Consensus       290 iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~  369 (836)
                      ..+..|.++.+=|.+.|+++...++.+.+...-++. ....++.+=.+..|++++++++.+ -.+. .+.+.+..+..-+
T Consensus        31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~f-s~k~LLr~gIvLlG~~ltl~~i~~-~G~~-~v~~~~~~l~~t~  107 (334)
T COG2855          31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITF-SSKKLLRLGIVLLGFRLTLSDIAD-VGGS-GVLIIAITLSSTF  107 (334)
T ss_pred             HhhhcCchHHHHHHHHHHHHhccccchhhhccchhh-hHHHHHHHHHHHHcceeeHHHHHH-cCcc-HHHHHHHHHHHHH
Confidence            344566778899999999999765555455444544 356677777888899999988762 1221 3333444555667


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 003256          370 VASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQ  409 (836)
Q Consensus       370 ~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~  409 (836)
                      +.++...+++|++++.++.+|..-+.=|...++...-..+
T Consensus       108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvik  147 (334)
T COG2855         108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIK  147 (334)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCC
Confidence            7777778899999999999998877777766666554433

>PRK05326 potassium/proton antiporter; Reviewed

Probab=94.83  E-value=0.48  Score=56.55  Aligned_cols=117  Identities=9%  Similarity=0.073  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc--hhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHH
Q 003256          279 AILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL--GSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAA  356 (836)
Q Consensus       279 ~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~--~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~  356 (836)
                      +++++..+++.++..+|++.+++-.++|+++.....-  ...-.+-. .....+.+++.....|+++|+..+.  ..+..
T Consensus        13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~-~~i~~l~L~~iLF~~Gl~~~~~~l~--~~~~~   89 (562)
T PRK05326         13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLA-YLVGNLALAVILFDGGLRTRWSSFR--PALGP   89 (562)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHH-HHHHHHHHHHHHHcCccCCCHHHHH--HHHHH
Confidence            3344455566777788999999999999998764211  01111223 3346788888888899999998886  33333


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHhhcCCChHHHHHHHHHhhhhhh
Q 003256          357 LELIIMAAYIGKV-VASILATTCFRTSFRNALLFSCFVNIKGV  398 (836)
Q Consensus       357 ~~~ii~~~~~~K~-~~~~l~~~~~~~~~real~lg~~m~~rG~  398 (836)
                      +..+....++.-. +.++.+.++.+++|.+++.+|..+++-..
T Consensus        90 ~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~  132 (562)
T PRK05326         90 ALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA  132 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence            3333333332222 33445556779999999999988775543

>PRK03818 putative transporter; Validated

Probab=94.52  E-value=0.49  Score=56.14  Aligned_cols=131  Identities=14%  Similarity=0.141  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHh-cccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhcc
Q 003256           52 MLQVSLAFSISQILYILL-RPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKM  130 (836)
Q Consensus        52 llqi~lil~~s~l~~~ll-~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~  130 (836)
                      ++-+++.+.++.+++.+= +.+++- +.|-+++|+++|-.  +.  .+ ..-.   .......+.++|+.+|+|.+|++.
T Consensus         8 ~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~--~~--~~-~~~~---~~~~~~~~~~~gl~lFv~~vGl~~   78 (552)
T PRK03818          8 VSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHF--VS--QF-GLTL---DSDMLHFIQEFGLILFVYTIGIQV   78 (552)
T ss_pred             HHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhcc--cc--cc-Cccc---ChHHHHHHHHHHHHHHHHHHhhcc
Confidence            334444444555555421 223344 47888999998852  11  11 0011   245677899999999999999999


Q ss_pred             Ccchh---hhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHh
Q 003256          131 DKGMI---PRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISE  196 (836)
Q Consensus       131 d~~~l---~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~e  196 (836)
                      -++.+   ++.+.+...+++.-.+++.++++.+.++++....     ...=..+-+.|++|.+......
T Consensus        79 Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~G~~aGa~T~tp~l~aa~~~  142 (552)
T PRK03818         79 GPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLP-----VMLGIFSGAVTNTPALGAGQQI  142 (552)
T ss_pred             cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHhhccccccHHHHHHHHH
Confidence            98765   5555666677777777777776666555543322     1222334466787877666543

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)

Probab=94.39  E-value=0.12  Score=45.01  Aligned_cols=48  Identities=13%  Similarity=0.003  Sum_probs=39.7

Q ss_pred             chHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhh-HHHHHHhccCCcce
Q 003256          557 TMHESICKLVKDNCITLILLQFIPPNEETEGRAACLH-GLNNNVLGYAPCTV  607 (836)
Q Consensus       557 ~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~g-sv~~~Vl~~ApCsV  607 (836)
                      .+.+.+.+.|++.++|.|++|.|+.|..   +....| ++..++.++++|||
T Consensus        35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~---~~~~~~~~~~~~~~~~~~~~v   83 (86)
T cd01984          35 AFVRILKRLAAEEGADVIILGHNADDVA---GRRLGASANVLVVIKGAGIPV   83 (86)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCchhhh---hhccCchhhhhhcccccCCce
Confidence            6888999999999999999999977433   222455 78899999999996

The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=94.08  E-value=3  Score=42.15  Aligned_cols=28  Identities=11%  Similarity=0.116  Sum_probs=20.7

Q ss_pred             HHHHHHHHHhhhccCcchhhhccchhhH
Q 003256          117 IGGIYFVFINTVKMDKGMIPRTIKKTYS  144 (836)
Q Consensus       117 iGl~~llF~~Gle~d~~~l~~~~~~~~~  144 (836)
                      +.+.+.||..|++++++++++..|+...
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~   29 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL   29 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHH
Confidence            4577899999999999999987766543

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]

Probab=93.89  E-value=0.48  Score=56.88  Aligned_cols=121  Identities=12%  Similarity=0.048  Sum_probs=80.7

Q ss_pred             CccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhc
Q 003256          460 DSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEG  539 (836)
Q Consensus       460 ~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~  539 (836)
                      ...-|||||++.......+++-+..++..-  ....+++|+.....+..+             ....+++...++--++ 
T Consensus       246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~--~a~~~av~v~~~~~~~~~-------------~~~~~~l~~~~~Lae~-  309 (890)
T COG2205         246 AARERILVCISGSPGSEKLIRRAARLASRL--HAKWTAVYVETPELHRLS-------------EKEARRLHENLRLAEE-  309 (890)
T ss_pred             cccceEEEEECCCCchHHHHHHHHHHHHHh--CCCeEEEEEecccccccc-------------HHHHHHHHHHHHHHHH-
Confidence            345699999999999999998887777543  456788997542211110             1122344444443333 


Q ss_pred             CCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCc
Q 003256          540 SNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPC  605 (836)
Q Consensus       540 ~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApC  605 (836)
                      ..+.+    .+..+  +++.+.|.++|++.++.-||+|-+.+   ..|.....|++.+++++++|-
T Consensus       310 lGae~----~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~---~rw~~~~~~~l~~~L~~~~~~  366 (890)
T COG2205         310 LGAEI----VTLYG--GDVAKAIARYAREHNATKIVIGRSRR---SRWRRLFKGSLADRLAREAPG  366 (890)
T ss_pred             hCCeE----EEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcc---hHHHHHhcccHHHHHHhcCCC
Confidence            22222    22232  69999999999999999999998866   334434558999999999863

>TIGR00698 conserved hypothetical integral membrane protein

Probab=93.76  E-value=1.2  Score=49.26  Aligned_cols=124  Identities=11%  Similarity=0.019  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHH-----hchhHHHHHHHHHhhccCCC--CchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHH
Q 003256          282 TGALVMAVACDS-----MRVNYTIGAAMLGIVIPAGP--PLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAF  354 (836)
Q Consensus       282 ~~~l~~~~iae~-----~G~~~~lGaf~aGl~i~~~~--~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~  354 (836)
                      .+++.+.++++.     .++++.+=|.+.|+++.|..  +..+....-++ +....++-+=-+..|+++++.++.+ ..+
T Consensus        12 ~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~-~G~   89 (335)
T TIGR00698        12 LILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIAD-VGP   89 (335)
T ss_pred             HHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHH-hhH
Confidence            334444455443     47888888999999998842  12222222222 3345566666788899999988752 222


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhh
Q 003256          355 AALELIIMAAYIGKVV-ASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWR  408 (836)
Q Consensus       355 ~~~~~ii~~~~~~K~~-~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~  408 (836)
                      . .+.+.+.....-+. +.++..+.+|++++.+..+|...+.=|...++...-..
T Consensus        90 ~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i  143 (335)
T TIGR00698        90 N-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI  143 (335)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc
Confidence            2 22222222333333 45555589999999999998887766766665554433

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=93.70  E-value=1.4  Score=53.62  Aligned_cols=71  Identities=10%  Similarity=0.139  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-h-cCCChHHHHHHHHHhhhhhhH
Q 003256          327 LSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATT-C-FRTSFRNALLFSCFVNIKGVS  399 (836)
Q Consensus       327 ~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~-~-~~~~~real~lg~~m~~rG~v  399 (836)
                      +..+.+++-....|++++...+.  ..|..+..+++.+...-++.+.+.++ + .+++|..++.+|.++++-.-+
T Consensus        74 IteIvL~I~LFa~Gl~L~~~~Lr--r~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV  146 (810)
T TIGR00844        74 ISRILLCLQVFAVSVELPRKYML--KHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV  146 (810)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence            45667777777789999998875  44544434443444444444444444 3 499999999999999886643

This model is specific for the fungal members of this family.

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=93.65  E-value=1.5  Score=54.66  Aligned_cols=108  Identities=8%  Similarity=0.030  Sum_probs=59.1

Q ss_pred             CCcccEEEEEccCCcchHHHHHHHHHh--hcCCCeEEEEEEEeecCCc-----------c-c-c--hhhhhhHHHHHHHH
Q 003256          625 ANFCYNVAVFFIGGPDDREAMALVSHM--SSNPGVRITLSRIYLEENL-----------V-E-E--EDDKCLDEVVMNDF  687 (836)
Q Consensus       625 ~~~~~~I~v~f~Gg~ddreAL~~A~rm--A~~~~~~Ltvvrv~~~~~~-----------~-~-~--~~e~~~d~~~l~~~  687 (836)
                      ++...||++++-+-.+-...+.++...  .++....+.++|+++-.+.           . . .  +.+....++.++.|
T Consensus       455 ~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af  534 (832)
T PLN03159        455 HDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAF  534 (832)
T ss_pred             CCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHH
Confidence            345679999999666667777776654  3456689999999873210           0 0 0  00111123444444


Q ss_pred             HhhcCCCCCEEEEE-EEcCChHHHHHHHHhc--ccCCcEEEEcccCCC
Q 003256          688 MASNFGNPNVVCRR-IDANDSNQLVNAFRSL--VSDNDLVIVGRQQPF  732 (836)
Q Consensus       688 ~~~~~~~~~v~y~e-~~v~~g~~~~~~i~~~--~~~~DLiivG~~~~~  732 (836)
                      +.-...++.+.-.. ..+...+.+-+-|...  ++..+||+++=|..+
T Consensus       535 ~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~  582 (832)
T PLN03159        535 ENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQ  582 (832)
T ss_pred             HHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCcc
Confidence            32111112333221 2244444455555554  356999999999754

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]

Probab=93.42  E-value=0.35  Score=57.97  Aligned_cols=126  Identities=13%  Similarity=0.134  Sum_probs=81.8

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCCh
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDS  707 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g  707 (836)
                      ..||+|...|+|.....++.|.|+|+..++++|++++..+......+.+++.-++.+ ++.+++..  .+  .  ++. +
T Consensus       248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~-~Lae~lGa--e~--~--~l~-~  319 (890)
T COG2205         248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENL-RLAEELGA--EI--V--TLY-G  319 (890)
T ss_pred             cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHH-HHHHHhCC--eE--E--EEe-C
Confidence            469999999999999999999999999999999999988754333222222221222 34444421  11  1  122 3


Q ss_pred             HHHHHHHHhcc--cCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeec
Q 003256          708 NQLVNAFRSLV--SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSV  774 (836)
Q Consensus       708 ~~~~~~i~~~~--~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~  774 (836)
                      .++.++|.+-+  .+.--||+|+++++         .|-+.- -|.+.|.|++.   .....|-+|--.
T Consensus       320 ~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~-~~~l~~~L~~~---~~~idv~ii~~~  375 (890)
T COG2205         320 GDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLF-KGSLADRLARE---APGIDVHIVALD  375 (890)
T ss_pred             CcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHh-cccHHHHHHhc---CCCceEEEeeCC
Confidence            44445544443  55788999999875         553221 19999999986   445566666543

>COG2855 Predicted membrane protein [Function unknown]

Probab=92.79  E-value=18  Score=39.73  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=68.7

Q ss_pred             cccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHH
Q 003256           70 RPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTV  149 (836)
Q Consensus        70 ~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~  149 (836)
                      ..+++|..+--|+.|+++|.  +...+.   ...+ .-.-.-..+-++|++    +.|.+++++++...+.+.+.+-...
T Consensus        33 ~~~~l~al~lAIllGi~l~~--l~~~~~---~~~~-GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~~  102 (334)
T COG2855          33 IHLGLSALTLAILLGILLGI--LPQIPA---QTSA-GITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAIT  102 (334)
T ss_pred             hhcCchHHHHHHHHHHHHhc--cccchh---hhcc-chhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHHH
Confidence            34679999999999999994  222211   0000 111223345566666    5688999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHhhccccccchHHHHHHHhhccc
Q 003256          150 FIVPLLISLLVGHREQYKIPRIHDQGISISFVASKC  185 (836)
Q Consensus       150 ~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~T  185 (836)
                      +...+++++.++.+++.+..    .++++|+-.|+.
T Consensus       103 l~~t~~~~~~lg~~lgld~~----~a~Lia~GssIC  134 (334)
T COG2855         103 LSSTFLFAYFLGKLLGLDKK----LALLIAAGSSIC  134 (334)
T ss_pred             HHHHHHHHHHHHHHhCCCHH----HHHHHHccchhh
Confidence            88888888888886665443    355555555543

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=92.26  E-value=5  Score=39.33  Aligned_cols=120  Identities=14%  Similarity=0.103  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHhchh--HHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhh-HHHHH
Q 003256          281 LTGALVMAVACDSMRVN--YTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWR-AFAAL  357 (836)
Q Consensus       281 l~~~l~~~~iae~~G~~--~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~-~~~~~  357 (836)
                      +......+++.+.+|+.  .++|+++++.++.-.....-.+-+.+..    +-.-+.-..+|.+++...+.+.. .+...
T Consensus         4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~----~~qviiG~~iG~~f~~~~l~~~~~~~~~~   79 (156)
T TIGR03082         4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLA----LAQVVIGILIGSRFTREVLAELKRLWPAA   79 (156)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHH----HHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            34455566677778875  7889988888877442222222222222    22334456789999987776333 33334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhh
Q 003256          358 ELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRW  407 (836)
Q Consensus       358 ~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~  407 (836)
                      ....+..+..-++..++..++.++++.+++ ++  ..|-|.-++......
T Consensus        80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~  126 (156)
T TIGR03082        80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAE  126 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHH
Confidence            455555566678888888999999998885 44  468888888775543

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>TIGR00841 bass bile acid transporter

Probab=92.14  E-value=20  Score=38.84  Aligned_cols=100  Identities=14%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhhhccCcchhhhccch--hhHHHHH-HH-HHHHHHHHHHHHHhhccccccchHHHHHHHhhcc-ccHHH
Q 003256          115 STIGGIYFVFINTVKMDKGMIPRTIKK--TYSVSLT-VF-IVPLLISLLVGHREQYKIPRIHDQGISISFVASK-CAYPV  189 (836)
Q Consensus       115 ~~iGl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~-l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~-Ts~~v  189 (836)
                      .-..+.+.||..|+.++.+++++..++  ....+.. .+ +.|++ +++++.+++..      .....|..+.. +...+
T Consensus        10 ~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~l~------~~~~~glvL~~~~P~~~   82 (286)
T TIGR00841        10 LLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFKLP------PELAVGVLIVGCCPGGT   82 (286)
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhCCC------HHHHHHHHheeeCCCch
Confidence            334488899999999999999886653  3333333 33 45544 35555554321      11222222222 11222


Q ss_pred             HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 003256          190 LVDAISELKLLNSELGQLAISSALLHEIVGLLRLL  224 (836)
Q Consensus       190 v~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~  224 (836)
                      .+.++.+.---|   ..++.+...++-+++.+.+-
T Consensus        83 ~s~v~t~~~~gn---~~la~~~~~~stlls~vt~P  114 (286)
T TIGR00841        83 ASNVFTYLLKGD---MALSISMTTCSTLLALGMMP  114 (286)
T ss_pred             HHHHHHHHhCCC---HhhhhHHHHHHHHHHHHHHH
Confidence            233444432122   34455555666666665554

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=91.57  E-value=0.95  Score=53.89  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=76.7

Q ss_pred             ccCCChhHHHHhhhceecccccccc-ccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcch---hhhccchhhHHH
Q 003256           71 PLKQPKFVSNTLSGIILGPSFLGRI-KMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGM---IPRTIKKTYSVS  146 (836)
Q Consensus        71 rl~~P~iv~~IlaGillGPs~Lg~~-~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~---l~~~~~~~~~ia  146 (836)
                      ++.+-...|-+++|+++|-  ++.. +.+  +-.|   .....++.++|+.+|++.+|++--++.   +++.+.+...++
T Consensus       412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~--~~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g  484 (562)
T TIGR03802       412 PLTLGTGGGALISGLVFGW--LRSKHPTF--GNIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG  484 (562)
T ss_pred             ceeehhhHHHHHHHHHHHH--hcccCCcc--eecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence            4445566788999999986  3331 111  1123   356678999999999999999988765   455666777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccchHHHHHH-HhhccccHHHHHHHHHhc
Q 003256          147 LTVFIVPLLISLLVGHREQYKIPRIHDQGISIS-FVASKCAYPVLVDAISEL  197 (836)
Q Consensus       147 ~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg-~~ls~Ts~~vv~~iL~el  197 (836)
                      +.-.++|.++++.+++++.+..     .....| ++-+.|++|.+.......
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~G~~aG~~t~t~~l~~a~~~~  531 (562)
T TIGR03802       485 IVVTILPLIITMLIGKYVLKYD-----PALLLGALAGARTATPALGAVLERA  531 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHhhccCCCcHHHHHHHHhc
Confidence            7777788888887775433221     224444 446778888887765543

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=91.53  E-value=0.84  Score=54.34  Aligned_cols=94  Identities=9%  Similarity=0.152  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHh-cccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchh
Q 003256           57 LAFSISQILYILL-RPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMI  135 (836)
Q Consensus        57 lil~~s~l~~~ll-~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l  135 (836)
                      +++.++++++.+= +.+++-.+.|-+++|+++|..  |. +      .|       +.+.++|+++|+|.+|++.-+..+
T Consensus        17 l~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~--g~-~------i~-------~~v~~~gl~lFvy~vG~~~Gp~Ff   80 (562)
T TIGR03802        17 LSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQL--GI-Q------ID-------PGVKAVFFALFIFAIGYEVGPQFF   80 (562)
T ss_pred             HHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhc--CC-C------CC-------hHHHHHHHHHHHHHhhhccCHHHH
Confidence            3444444444332 346677788999999999963  32 0      11       136789999999999999999876


Q ss_pred             hhccc---hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003256          136 PRTIK---KTYSVSLTVFIVPLLISLLVGHREQY  166 (836)
Q Consensus       136 ~~~~~---~~~~ia~~~~l~p~~lg~~~~~~l~~  166 (836)
                      +.-+|   +-..+++.-.++.+++.++++++++.
T Consensus        81 ~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~  114 (562)
T TIGR03802        81 ASLKKDGLREIILALVFAVSGLITVYALAKIFGL  114 (562)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            54444   44444444444444444555554443

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>PRK04972 putative transporter; Provisional

Probab=91.41  E-value=0.81  Score=54.38  Aligned_cols=120  Identities=20%  Similarity=0.210  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHH-hcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcc
Q 003256           55 VSLAFSISQILYIL-LRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKG  133 (836)
Q Consensus        55 i~lil~~s~l~~~l-l~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~  133 (836)
                      +++.+.++.+++.+ ++.+++-...|-+++|+++|-.  |.-       .|       ..+.++|+.+|+|.+|++.-+.
T Consensus        17 lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~--~~~-------~~-------~~~~~~gl~lF~~~vG~~~Gp~   80 (558)
T PRK04972         17 LFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQ--HFS-------IN-------TDALNLGFMLFIFCVGVEAGPN   80 (558)
T ss_pred             HHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhC--CCC-------CC-------hHHHHHHHHHHHHHHhhhhhHH
Confidence            33344444444443 2456677778999999999963  320       11       1235899999999999999886


Q ss_pred             hh---hhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHH
Q 003256          134 MI---PRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAIS  195 (836)
Q Consensus       134 ~l---~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~  195 (836)
                      .+   ++.+.+...+++...++++++++.++++++....     ...=..+-+.|++|.+.....
T Consensus        81 F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~G~~aGa~T~tp~l~~a~~  140 (558)
T PRK04972         81 FFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIG-----LTAGMLAGSMTSTPVLVGAGD  140 (558)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHhhccccCcHHHHHHHH
Confidence            54   5555666677777777777777776666543322     122223345577777766544

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=91.20  E-value=2.6  Score=49.89  Aligned_cols=117  Identities=18%  Similarity=0.283  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchh-hHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Q 003256          280 ILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGS-ALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALE  358 (836)
Q Consensus       280 il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~-~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~  358 (836)
                      .++.+.+...+++.+++++.++-+++|+++...+.... .+..   .....+++|......|+++|...+.  ..+..+.
T Consensus         6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~--~~~~~i~   80 (525)
T TIGR00831         6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELR--ENFRPIA   80 (525)
T ss_pred             HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHH
Confidence            33344455566777888888888888888764311110 1111   1223478888888889999998886  3333232


Q ss_pred             HHHHHHHH-HHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHH
Q 003256          359 LIIMAAYI-GKVVASILATTCFRTSFRNALLFSCFVNIKGVSEL  401 (836)
Q Consensus       359 ~ii~~~~~-~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l  401 (836)
                      .+.+...+ .-.+.++...+..++||..++.+|.++++...+..
T Consensus        81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav  124 (525)
T TIGR00831        81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV  124 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence            33222222 23333333334678999999999999988776654

This model is specific for the bacterial members of this family.

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain

Probab=90.29  E-value=1.8  Score=42.41  Aligned_cols=114  Identities=12%  Similarity=0.138  Sum_probs=66.4

Q ss_pred             CChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccc----hhhHHHHHH
Q 003256           74 QPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIK----KTYSVSLTV  149 (836)
Q Consensus        74 ~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~----~~~~ia~~~  149 (836)
                      +-...+-+++|+++|-  ++...... +-.|   ......+.++|+.+|++.+|++--.+.+..-.+    ....++..-
T Consensus        21 LG~~~G~L~vgL~~G~--~~~~~p~~-~~~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v   94 (154)
T TIGR01625        21 LGNAGGVLFVGLLLGH--FGATGPLT-WYIP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI   94 (154)
T ss_pred             ecccHHHHHHHHHHHh--ccccCCcc-eecC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence            3346788999999986  34321110 1122   346778899999999999999998866543222    233344444


Q ss_pred             HHHHHHHHHHHHHHhhccccccchHHHHHHH-hhccccHHHHHHHHHhcc
Q 003256          150 FIVPLLISLLVGHREQYKIPRIHDQGISISF-VASKCAYPVLVDAISELK  198 (836)
Q Consensus       150 ~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~-~ls~Ts~~vv~~iL~el~  198 (836)
                      .++|.+++..++.++.+..     .....|+ +=+.|++|.+....+..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~-----~~~~~G~~aGa~T~tpaL~aa~~~~~  139 (154)
T TIGR01625        95 TVVPTLLVAVALIKLLRIN-----YALTAGMLAGATTNTPALDAANDTLR  139 (154)
T ss_pred             HHHHHHHHHHHHHHHhCCC-----HHHHHHHHhccccChHHHHHHHHHhc
Confidence            4455555555544332211     2233333 456788888877655443

This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=88.24  E-value=4.1  Score=45.86  Aligned_cols=114  Identities=10%  Similarity=0.052  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhhccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH-HHhhhhhhH-HHHHH
Q 003256          328 SNFFLPFFYIHVGQQIDIYSINNW-RAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFS-CFVNIKGVS-ELVTF  404 (836)
Q Consensus       328 ~~~flPlFF~~~Gl~idl~~l~~~-~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg-~~m~~rG~v-~l~~~  404 (836)
                      .++|+-.||..+|+..++..+.+. ........+.....+...+.....+..++.++.-.+..| ..+ ..|+- +.++.
T Consensus        66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f-~GGhGTAaa~g  144 (368)
T PF03616_consen   66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGF-TGGHGTAAAFG  144 (368)
T ss_pred             HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccc-cCCccHHHHHH
Confidence            456777899999999998877522 222222222223334566555555677788776555443 222 22332 33334


Q ss_pred             hhhhhc-cccchhhHH--HHHHHHHHHHHhHHHHHHHhccc
Q 003256          405 LRWRQR-ELIDVQTYS--VLVLTNLAVTAIVTPLISVYYNP  442 (836)
Q Consensus       405 ~~~~~~-~ii~~~~~~--~~vl~~lv~t~i~~plv~~l~~p  442 (836)
                      ....+. |.-+.....  ...+..+.-.++-.|+.+++.|+
T Consensus       145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk  185 (368)
T PF03616_consen  145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRK  185 (368)
T ss_pred             HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444444 554333322  22333444456678999987753

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=87.72  E-value=37  Score=35.18  Aligned_cols=110  Identities=14%  Similarity=0.129  Sum_probs=74.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhh
Q 003256          317 SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIK  396 (836)
Q Consensus       317 ~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~r  396 (836)
                      +.+..-+++-+-.+..|+|       =+++.+.  ..|..+..-++++.+.-++.+++.+++++.+..  +..+  +.||
T Consensus        62 ~~i~~lLgPAtVAlAvPLY-------kq~~~ik--~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~S--l~Pk  128 (230)
T COG1346          62 QWINFLLGPATVALAVPLY-------KQRHLIK--RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LILS--LLPK  128 (230)
T ss_pred             HHHHHHHHHHHHHHhhHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHH--hccc
Confidence            4444555555556666766       2333443  456555555666667778888888999988753  3333  4699


Q ss_pred             hhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 003256          397 GVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVY  439 (836)
Q Consensus       397 G~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l  439 (836)
                      ....-+...+..+.|-+.+-+-..++++-++-+.+.+++++++
T Consensus       129 SvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~  171 (230)
T COG1346         129 SVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL  171 (230)
T ss_pred             ccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999888888888888877666666667777566666677765

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=87.19  E-value=37  Score=35.47  Aligned_cols=108  Identities=8%  Similarity=0.068  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhh
Q 003256          319 LVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGV  398 (836)
Q Consensus       319 l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~  398 (836)
                      +..-+.+-+-.+..|+|       -+...+.  +.|..+.+-++++.+.-++++++.++++|.+..  +.  ..|.+|..
T Consensus        67 l~~lLgPAtVALAvPLY-------~q~~~lk--~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~--~~--~Sl~pKSV  133 (232)
T PRK04288         67 ISFFLEPATIAFAIPLY-------KKRDVLK--KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA--VM--ASMLPQAA  133 (232)
T ss_pred             HHHHHHHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhHhh
Confidence            34445555555666666       2333443  445545555556666677778888888888752  33  33579999


Q ss_pred             HHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 003256          399 SELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVY  439 (836)
Q Consensus       399 v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l  439 (836)
                      ..=+...+..+.|-+..-.-..++++-++-.++.+++++++
T Consensus       134 TtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~  174 (232)
T PRK04288        134 TTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF  174 (232)
T ss_pred             hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            98888888888887665555556666666555566666664

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=86.83  E-value=3.9  Score=44.41  Aligned_cols=110  Identities=19%  Similarity=0.300  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHh
Q 003256          327 LSNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFL  405 (836)
Q Consensus       327 ~~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~  405 (836)
                      .++++=|+-|.-+|..+|+..+. ++...    ++-..+=++ +..+++.+...|++.+|+-.+|.+=..-|-.++.+.+
T Consensus        67 ~~~l~P~LIF~GIGAmtDFgpllanP~~~----llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~  141 (360)
T PF03977_consen   67 SNGLFPPLIFMGIGAMTDFGPLLANPKTL----LLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS  141 (360)
T ss_pred             hcchhhHHHHHHHhHHHhhHHHHhCHHHH----HHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence            46788888999999999998775 33321    111122222 2345566677799999999999998888888887766


Q ss_pred             hhhh--ccccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 003256          406 RWRQ--RELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRR  445 (836)
Q Consensus       406 ~~~~--~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p~~~  445 (836)
                      ..-.  .+-|.-..|+=   ++++ =.+-||++|.+-.+++|
T Consensus       142 ~LAp~LlgpIaVaAYsY---MaLv-PiiqPpimklLttkkeR  179 (360)
T PF03977_consen  142 KLAPHLLGPIAVAAYSY---MALV-PIIQPPIMKLLTTKKER  179 (360)
T ss_pred             hhhHHHHHHHHHHHHHH---HHHH-hhhhhHHHHHhcCHHHH
Confidence            4321  23333334433   3333 56789999988754443

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>COG2985 Predicted permease [General function prediction only]

Probab=86.53  E-value=3.3  Score=47.07  Aligned_cols=103  Identities=19%  Similarity=0.265  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhhhccCcch---hhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHH-HhhccccHHHH-
Q 003256          116 TIGGIYFVFINTVKMDKGM---IPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISIS-FVASKCAYPVL-  190 (836)
Q Consensus       116 ~iGl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg-~~ls~Ts~~vv-  190 (836)
                      ++|+++|.+.+|+|--+..   +++.+++-..+++.-    ++.+.+++++++..+..  +..+..| .+-+.||+|.+ 
T Consensus        62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~~--~~~~~~Gm~sGAlTsTP~L~  135 (544)
T COG2985          62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFGI--DLGLIAGMFSGALTSTPGLG  135 (544)
T ss_pred             hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcCC--CHHHhhhhhcccccCCchhH
Confidence            8999999999999999865   567777776665543    44444555555544442  2222222 22244555554 


Q ss_pred             --HHHHHhccccCChhH--HHHHHHHHHHHHHHHHHHH
Q 003256          191 --VDAISELKLLNSELG--QLAISSALLHEIVGLLRLL  224 (836)
Q Consensus       191 --~~iL~el~l~~s~~g--~l~ls~a~v~Di~~~~ll~  224 (836)
                        ..+|++++....-.-  ....+.+..--++++++.+
T Consensus       136 aa~~~L~~lg~~~~~~~~~~~gYamaYp~Gil~ii~~~  173 (544)
T COG2985         136 AAQDILRELGAPSQALDQMGMGYALAYPIGILGIILGA  173 (544)
T ss_pred             HHHHHHHhhccchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence              556777664311111  2334445555666666665

>COG3329 Predicted permease [General function prediction only]

Probab=85.95  E-value=22  Score=38.18  Aligned_cols=125  Identities=14%  Similarity=0.095  Sum_probs=72.8

Q ss_pred             hhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          296 VNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILA  375 (836)
Q Consensus       296 ~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~  375 (836)
                      +++.+.-|+.|++++-.. ..-++-+.+-...+..++--.-..-|+.+.-+.+.  .....++.-+.+.++.-++..++.
T Consensus        16 ~sP~llFf~~Gmlia~~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~--a~v~~~~~~~aL~~li~~ia~f~l   92 (372)
T COG3329          16 LSPTLLFFILGMLIAAFK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLT--AMVLPVALGVALGFLIVFIAYFLL   92 (372)
T ss_pred             ccchHHHHHHHHHHHHHh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            478888888888877542 11112222222212112211122234444444443  233334444556666778888888


Q ss_pred             HhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHH
Q 003256          376 TTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVL  423 (836)
Q Consensus       376 ~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl  423 (836)
                      .++.+++..|+...+-.-+.-..+.++.+..-++..-+..+-|...++
T Consensus        93 ~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~l  140 (372)
T COG3329          93 RKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAML  140 (372)
T ss_pred             HHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence            899999999999998877766777777666666655566666554433

>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes

Probab=85.86  E-value=69  Score=36.82  Aligned_cols=38  Identities=16%  Similarity=0.190  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 003256          187 YPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL  224 (836)
Q Consensus       187 ~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~  224 (836)
                      +|++..+.+.+|+.+.+.--.+++++.+.|..+.++-.
T Consensus       117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lpv  154 (423)
T PF02040_consen  117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLPV  154 (423)
T ss_pred             HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccccc
Confidence            58888888888875554556789999999999987654

Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=85.62  E-value=2.6  Score=45.68  Aligned_cols=76  Identities=14%  Similarity=0.130  Sum_probs=56.6

Q ss_pred             hHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHH
Q 003256           77 FVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLI  156 (836)
Q Consensus        77 iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~l  156 (836)
                      .+--++.|+++|+.    .+++.         +.++.-..+++.|+.|..|..+|++.+.+.+...+.+++..+.+.+.+
T Consensus       169 lilpILiGmilGNl----d~~~~---------~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~  235 (312)
T PRK12460        169 ALLPLVLGMILGNL----DPDMR---------KFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF  235 (312)
T ss_pred             HHHHHHHHHHHhcc----chhhH---------HHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            55567888888872    11111         122222334888999999999999999999999999999988888888


Q ss_pred             HHHHHHHhh
Q 003256          157 SLLVGHREQ  165 (836)
Q Consensus       157 g~~~~~~l~  165 (836)
                      ++.+..+++
T Consensus       236 ~~~i~rllg  244 (312)
T PRK12460        236 NIFADRLVG  244 (312)
T ss_pred             HHHHHHHhC
Confidence            888887663

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed

Probab=85.44  E-value=4.7  Score=42.93  Aligned_cols=108  Identities=11%  Similarity=0.069  Sum_probs=62.2

Q ss_pred             EccCCcchHHHHHHHHHhhcCCC-eEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEE-E--EcCChHH
Q 003256          634 FFIGGPDDREAMALVSHMSSNPG-VRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRR-I--DANDSNQ  709 (836)
Q Consensus       634 ~f~Gg~ddreAL~~A~rmA~~~~-~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e-~--~v~~g~~  709 (836)
                      ++.=.|.|+-||+.|.|+.++.+ .++|++.+-++...         +++.+++....  +.++....+ .  .-.|...
T Consensus        31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~---------~~~~lr~aLAm--GaD~avli~d~~~~g~D~~~   99 (256)
T PRK03359         31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT---------NAKGRKDVLSR--GPDELIVVIDDQFEQALPQQ   99 (256)
T ss_pred             ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh---------hHHHHHHHHHc--CCCEEEEEecCcccCcCHHH
Confidence            44448999999999999999764 89999999875321         11233332222  222222121 1  1124445


Q ss_pred             HHHHHHhc--ccCCcEEEEcccCCC-C----ccccccCCCCCCCCccccccch
Q 003256          710 LVNAFRSL--VSDNDLVIVGRQQPF-S----SRLLEETKPWVEYDELGIIGDM  755 (836)
Q Consensus       710 ~~~~i~~~--~~~~DLiivG~~~~~-~----~~~~~Gl~~w~e~~eLG~igd~  755 (836)
                      |..+|.+.  ..+||||+.|+..-. .    .++++++.+|   |-+..+-+.
T Consensus       100 tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~---P~vt~v~~l  149 (256)
T PRK03359        100 TASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNI---PAINGVSKI  149 (256)
T ss_pred             HHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCC---CceeeEEEE
Confidence            55555544  135999999997632 1    2344444444   666666654

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=85.20  E-value=7.4  Score=39.54  Aligned_cols=49  Identities=18%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHh
Q 003256          357 LELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFL  405 (836)
Q Consensus       357 ~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~  405 (836)
                      .+.+-+..+++-++++++.+++.+++++|++.++..++--...+..+..
T Consensus        58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~  106 (191)
T PF03956_consen   58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ  106 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence            4556667788999999999999999999999998877766666665544

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=84.54  E-value=8.8  Score=43.59  Aligned_cols=166  Identities=12%  Similarity=0.072  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcc--cCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhc
Q 003256           52 MLQVSLAFSISQILYILLRP--LKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVK  129 (836)
Q Consensus        52 llqi~lil~~s~l~~~ll~r--l~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle  129 (836)
                      +..+.+.+.+++.+...++.  +.+|.+++.+++|+++.+. +.....     .. -..+.++.++++.+-+++-.+=..
T Consensus       221 l~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni-~~~~~~-----~~-~~~~~i~~I~~~sLdlfl~~Alms  293 (398)
T TIGR00210       221 IALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNP-LSFKKF-----PW-VAERAVSVIGNVSLSLFLAIALMS  293 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-HHHhCc-----cc-cchHHHHHHHHHHHHHHHHHHHHh
Confidence            35566666677777777765  7799999999999999873 221110     00 123589999999999999888889


Q ss_pred             cCcchhhhccchhhHHHHHHHHHHHHHHHHHHH-HhhccccccchHHHHHHHhhccccHHHH--HHHHHhccccCChhHH
Q 003256          130 MDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGH-REQYKIPRIHDQGISISFVASKCAYPVL--VDAISELKLLNSELGQ  206 (836)
Q Consensus       130 ~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~-~l~~~~~~~~~~sl~lg~~ls~Ts~~vv--~~iL~el~l~~s~~g~  206 (836)
                      +++..+....-..+.+.+.+.+...+....+.+ .++..+....-.+-..|..+..|+.++.  -.+-++.|-.+...=-
T Consensus       294 L~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~i  373 (398)
T TIGR00210       294 LQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIV  373 (398)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceeh
Confidence            999999999988888888888887765544443 3444322000002456666666655444  2333445543333323


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 003256          207 LAISSALLHEIVGLLRLL  224 (836)
Q Consensus       207 l~ls~a~v~Di~~~~ll~  224 (836)
                      .=+-.+.+-|++...++.
T Consensus       374 vPlvgaf~id~~n~~~i~  391 (398)
T TIGR00210       374 VPLVGAFFIDIINALVIK  391 (398)
T ss_pred             hhhHHHHHHHHhhHHHHH
Confidence            334557777777666555

>PRK04972 putative transporter; Provisional

Probab=84.43  E-value=6.5  Score=46.81  Aligned_cols=115  Identities=14%  Similarity=0.099  Sum_probs=76.7

Q ss_pred             cCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcch---hhhccchhhHHHHH
Q 003256           72 LKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGM---IPRTIKKTYSVSLT  148 (836)
Q Consensus        72 l~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~  148 (836)
                      +++-.--|.+++|+++|-  ++...... +-.|   .....++.++|+.+|+..+|+.--.+.   +++.+.+.+.++..
T Consensus       408 ~~LG~agG~L~~gl~~g~--~~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~  481 (558)
T PRK04972        408 FGIGNAAGLLFAGIMLGF--LRANHPTF-GYIP---QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLI  481 (558)
T ss_pred             eeccccHHHHHHHHHHHh--ccccCCCc-eeeC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence            334455678899999885  44321111 1123   456778999999999999999877654   45566777778888


Q ss_pred             HHHHHHHHHHHHHHHhhccccccchHHHHHH-HhhccccHHHHHHHHHhc
Q 003256          149 VFIVPLLISLLVGHREQYKIPRIHDQGISIS-FVASKCAYPVLVDAISEL  197 (836)
Q Consensus       149 ~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg-~~ls~Ts~~vv~~iL~el  197 (836)
                      -.++|.++++.+++++.+...     ...+| ++-+.|++|.+.......
T Consensus       482 ~t~~~~~~~~~~~~~~~k~~~-----~~~~G~~aG~~t~~~~l~~~~~~~  526 (558)
T PRK04972        482 VSLVPVVICFLFGAYVLRMNR-----ALLFGAIMGARTCAPAMEIISDTA  526 (558)
T ss_pred             HHHHHHHHHHHHHHHHHcCCH-----HHHHHHHhCCCCCcHHHHHHHhhc
Confidence            888888888888865543322     23444 556778888887665443

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=84.01  E-value=18  Score=40.04  Aligned_cols=112  Identities=17%  Similarity=0.105  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHH
Q 003256          326 ILSNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTF  404 (836)
Q Consensus       326 ~~~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~  404 (836)
                      +.++++=|+-|.-+|..+|+..+. ++....+.   -..+=+|-+ .+++.+...|++.+|+-.+|.+=+.-|-.++.+.
T Consensus       102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~---gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s  177 (399)
T TIGR03136       102 FSNSLVACILFFGIGAMSDISFILARPWASITV---ALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS  177 (399)
T ss_pred             HhcccHHHHHHHhccHHhcchHHHhChHHHHHH---HHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence            456788899999999999998775 33322110   112222322 3445566779999999999999888888888776


Q ss_pred             hhhhh--ccccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 003256          405 LRWRQ--RELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRR  445 (836)
Q Consensus       405 ~~~~~--~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p~~~  445 (836)
                      +....  .+-|.-..|+=   ++++ =++-||++|.+-.+++|
T Consensus       178 ~kLAp~Llg~IaVAAYsY---MaLV-PiiqPpimklLttkkER  216 (399)
T TIGR03136       178 LILAKDLFVPISIIAYLY---LSLT-YAGYPYLIKLLVPKKYR  216 (399)
T ss_pred             HhhhhHhHHHHHHHHHHH---HHHH-hcccchHHHhhcCHHHH
Confidence            64321  23333334433   3333 56789999988754443

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)

Probab=83.94  E-value=2.6  Score=36.43  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=28.7

Q ss_pred             EEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEe
Q 003256          631 VAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIY  665 (836)
Q Consensus       631 I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~  665 (836)
                      |++++.||+|+..++.++.+.+ ..+.+++.+++.
T Consensus         1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~   34 (86)
T cd01984           1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV   34 (86)
T ss_pred             CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence            5789999999999999999987 446688877774

The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]

Probab=83.54  E-value=8  Score=38.76  Aligned_cols=93  Identities=9%  Similarity=0.174  Sum_probs=55.1

Q ss_pred             EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCC---
Q 003256          630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDAND---  706 (836)
Q Consensus       630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~---  706 (836)
                      +|+|.+-||+|.--.|.+...+.+..+.+++++++-..-..     +...+.++++++.+++.    +.+.......   
T Consensus         1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~-----~s~~~~~~v~~~~~~~~----i~~~~~~~~~~~~   71 (182)
T PF01171_consen    1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE-----ESDEEAEFVEEICEQLG----IPLYIVRIDEDRK   71 (182)
T ss_dssp             EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC-----CHHHHHHHHHHHHHHTT-----EEEEEE--CHCC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-----ccchhHHHHHHHHHhcC----CceEEEEeeeeec
Confidence            58899999999999999999999999999999999764321     23344567888887652    2222222221   


Q ss_pred             -h---HHHHH-----HHHhcc--cCCcEEEEcccCC
Q 003256          707 -S---NQLVN-----AFRSLV--SDNDLVIVGRQQP  731 (836)
Q Consensus       707 -g---~~~~~-----~i~~~~--~~~DLiivG~~~~  731 (836)
                       .   ++...     .+.+.+  .++|.++.|.|..
T Consensus        72 ~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d  107 (182)
T PF01171_consen   72 KGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD  107 (182)
T ss_dssp             TTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence             1   22222     233333  5589999999853

The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain

Probab=82.83  E-value=7.2  Score=39.20  Aligned_cols=57  Identities=12%  Similarity=0.174  Sum_probs=41.0

Q ss_pred             EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256          630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN  691 (836)
Q Consensus       630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~  691 (836)
                      ||+|.+.||.|.--++.++.+.++..+.++.++++-.....     +.+.+.+.++++.+.+
T Consensus         1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~-----~~~~~~~~~~~~~~~~   57 (189)
T TIGR02432         1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP-----ESDEEAEFVQQFCKKL   57 (189)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh-----hHHHHHHHHHHHHHHc
Confidence            58999999999999999999998887888999988643211     1122334555666554

The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=82.58  E-value=9.7  Score=42.95  Aligned_cols=107  Identities=12%  Similarity=0.118  Sum_probs=59.8

Q ss_pred             HHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHH-HhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003256          300 IGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYI-HVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTC  378 (836)
Q Consensus       300 lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~-~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~  378 (836)
                      +...++|.+..+.+-+.++-.+.+..++..+++|.+.. .++-..+...+.   .++.+.+...+..+.-++..++..++
T Consensus        10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (385)
T PF03547_consen   10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL---SLWFIPVFAFIIFILGLLLGFLLSRL   86 (385)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445666666555567777888899999999999854 444333333332   23333333333333345555666666


Q ss_pred             cCCChHHHH--HHHHHhhhhhhHHHHHHhhhhh
Q 003256          379 FRTSFRNAL--LFSCFVNIKGVSELVTFLRWRQ  409 (836)
Q Consensus       379 ~~~~~real--~lg~~m~~rG~v~l~~~~~~~~  409 (836)
                      ++.+.++.-  .++...+.-|.+.+-+....+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g  119 (385)
T PF03547_consen   87 FRLPKEWRGVFVLAASFGNTGFLGLPILQALFG  119 (385)
T ss_pred             cCCCcccceEEEecccCCcchhhHHHHHHHHhc
Confidence            666554433  3344445566666666554443

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PRK12342 hypothetical protein; Provisional

Probab=82.49  E-value=4.3  Score=43.11  Aligned_cols=107  Identities=14%  Similarity=0.080  Sum_probs=60.1

Q ss_pred             EEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCC-EEEEEEE--cCChHH
Q 003256          633 VFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPN-VVCRRID--ANDSNQ  709 (836)
Q Consensus       633 v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~-v~y~e~~--v~~g~~  709 (836)
                      +++.=.|.|+.||+.|.|+.+ .+.++|++.+-++..         .+++.+++....  +.++ +......  -.|...
T Consensus        29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a---------~~~~l~r~alam--GaD~avli~d~~~~g~D~~a   96 (254)
T PRK12342         29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGGSLL---------QNSKVRKDVLSR--GPHSLYLVQDAQLEHALPLD   96 (254)
T ss_pred             CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCChH---------hHHHHHHHHHHc--CCCEEEEEecCccCCCCHHH
Confidence            344458999999999999994 689999999987521         011122322221  2222 2222111  123333


Q ss_pred             HHHHHHhcc--cCCcEEEEcccCCCC-----ccccccCCCCCCCCccccccc
Q 003256          710 LVNAFRSLV--SDNDLVIVGRQQPFS-----SRLLEETKPWVEYDELGIIGD  754 (836)
Q Consensus       710 ~~~~i~~~~--~~~DLiivG~~~~~~-----~~~~~Gl~~w~e~~eLG~igd  754 (836)
                      |..+|...-  .+||||+.|+.....     .++++.+.+|   |-+..+-+
T Consensus        97 ta~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~---P~vt~v~~  145 (254)
T PRK12342         97 TAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQL---PVINAVSK  145 (254)
T ss_pred             HHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCC---CcEeeEEE
Confidence            344444431  359999999986432     3555555555   54444443

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=81.71  E-value=5.3  Score=39.18  Aligned_cols=97  Identities=12%  Similarity=0.103  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhcccCCC--hhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcch
Q 003256           57 LAFSISQILYILLRPLKQP--KFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGM  134 (836)
Q Consensus        57 lil~~s~l~~~ll~rl~~P--~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~  134 (836)
                      +.+.++.+.+.+++++++|  ..+|.++++.++.-  .|..+    .-.|       ..+.+++.+++=-.+|.+++.+.
T Consensus         2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~----~~~P-------~~~~~~~qviiG~~iG~~f~~~~   68 (156)
T TIGR03082         2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE----ITLP-------PWLLALAQVVIGILIGSRFTREV   68 (156)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc----CCCC-------HHHHHHHHHHHHHHHHccCCHHH
Confidence            3456777888899999988  66677766666552  22111    0112       23456677777799999999998


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003256          135 IPRTIKKTYSVSLTVFIVPLLISLLVGHREQYK  167 (836)
Q Consensus       135 l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~  167 (836)
                      +++..+... .++...++...++...++++.+.
T Consensus        69 l~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~  100 (156)
T TIGR03082        69 LAELKRLWP-AALLSTVLLLALSALLAWLLARL  100 (156)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            876655443 33444555555566666655543

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=81.53  E-value=11  Score=43.54  Aligned_cols=73  Identities=11%  Similarity=0.240  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhhhhhhHHHHH
Q 003256          329 NFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF--RTSFRNALLFSCFVNIKGVSELVT  403 (836)
Q Consensus       329 ~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~real~lg~~m~~rG~v~l~~  403 (836)
                      .+++|+-....|+++|...+.  +.+..+..+.....+...++.....++.  ++|+..++.+|.++++-.-+.+.-
T Consensus        64 ~l~l~ilLf~~g~~l~~~~l~--~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~  138 (429)
T COG0025          64 VLFLAILLFAGGLELDLRELR--RVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP  138 (429)
T ss_pred             HHHHHHHHHHhHhcCCHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence            566666666679999998886  3343333333334444444444444444  889999999999888877665543

>PRK03818 putative transporter; Validated

Probab=80.43  E-value=9.2  Score=45.52  Aligned_cols=106  Identities=17%  Similarity=0.125  Sum_probs=70.5

Q ss_pred             hHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhh----ccchhhHHHHHHHHH
Q 003256           77 FVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPR----TIKKTYSVSLTVFIV  152 (836)
Q Consensus        77 iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~l~  152 (836)
                      .-|.+++|+++|-  ++...... +-.|   ......+.++|+.+|+..+|++--.+.+..    .+.+...+|..-.++
T Consensus       403 ~~G~L~~gl~~g~--~~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~  476 (552)
T PRK03818        403 AGGPLIVALILGR--IGSIGKLY-WFMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV  476 (552)
T ss_pred             chHHHHHHHHHHh--ccCCCCce-eecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence            4578899999885  33321111 1233   356778899999999999999887765432    456667777777788


Q ss_pred             HHHHHHHHHHHhhccccccchHHHHHH-HhhccccHHHHHHH
Q 003256          153 PLLISLLVGHREQYKIPRIHDQGISIS-FVASKCAYPVLVDA  193 (836)
Q Consensus       153 p~~lg~~~~~~l~~~~~~~~~~sl~lg-~~ls~Ts~~vv~~i  193 (836)
                      |.++++.+++++.+..     ....+| .+-+.|++|.+...
T Consensus       477 ~~~~~~~~~~~~~~~~-----~~~~~G~~aG~~t~tp~l~~a  513 (552)
T PRK03818        477 PLLIVGILARMLAKMN-----YLTLCGMLAGSMTDPPALAFA  513 (552)
T ss_pred             HHHHHHHHHHHHHcCC-----HHHHHHHHhccCCCcHHHHHH
Confidence            8888888875543321     224444 45677888887665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	836
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 5e-10
 Identities = 100/695 (14%), Positives = 204/695 (29%), Gaps = 231/695 (33%)

Query: 188 PVLVDAISELKLLN----SELGQLAISSALLHEIV-------GLLRLLMAPLSKAK---Y 233
            V  DA   +   +     ++ +  +S   +  I+       G LRL    LSK +    
Sbjct: 23  SVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 234 RSV-------------AIRIELSLCAMSLFTFL----VLWPTIQWIIRR-IPERKPVKDF 275
           + V              I+ E    +M    ++     L+   Q   +  +   +P    
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK- 139

Query: 276 YIVAILTGALVMAVACDSMRVNYTI---GAAMLGIVIPAGPPLG-SALVE---KSEAILS 328
                L  AL+       +R    +   G  +LG         G + +      S  +  
Sbjct: 140 -----LRQALL------ELRPAKNVLIDG--VLGS--------GKTWVALDVCLSYKVQC 178

Query: 329 NFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALL 388
                 F++++                  E ++           +L    ++        
Sbjct: 179 KMDFKIFWLNLKNCNSP------------ETVLE----------MLQKLLYQIDPNWTSR 216

Query: 389 FSCFVNIK-----GVSELVTFLRWRQRE---LI--DVQTYSV----------LVLT-NLA 427
                NIK       +EL   L+ +  E   L+  +VQ              L+ T    
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 428 VTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNP 487
           VT  ++   + +         I++      L   E++ L            +       P
Sbjct: 277 VTDFLSAATTTH---------ISLDHHSMTLTPDEVKSLL--------LKYLDCRPQDLP 319

Query: 488 TEM---NPICAYVVHLVELVGRAAPVVETYST----------QKTKAMANSTDHIMRAVI 534
            E+   NP        + ++     + +  +T          + T  + +S + +  A  
Sbjct: 320 REVLTTNPR------RLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 535 K--YAEGS--NDAVTIQPFIMIS------QYETMHESICKLV------KDNC---ITLIL 575
           +  +   S    +  I P I++S          +   + KL       K      I++  
Sbjct: 372 RKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 576 LQF---IPPNEETEGRAACLHGLNNNVLG-YAPCTVGIFVDKRLNNCSNSAKPANFCYNV 631
           +     +    E       LH    +++  Y           +  +  +   P    Y  
Sbjct: 431 IYLELKVKLENEYA-----LH---RSIVDHYNI--------PKTFDSDDLIPPYLDQY-- 472

Query: 632 AVF-FIGGPDDREAMALVSHMSS-NPGVRITL-SRIYLEENLVEEEDDKCLDEVVMNDFM 688
             +  IG            H+ +     R+TL   ++L        D + L++ + +D  
Sbjct: 473 -FYSHIG-----------HHLKNIEHPERMTLFRMVFL--------DFRFLEQKIRHDST 512

Query: 689 ASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDE 748
           A N             N   QL   ++  + DND        P   RL+     ++   E
Sbjct: 513 AWN-------ASGSILNTLQQL-KFYKPYICDND--------PKYERLVNAILDFLPKIE 556

Query: 749 LGII----GDMLASADFAEGMVSVLVIQSVRILKK 779
             +I     D+L  A  AE     +  ++ + +++
Sbjct: 557 ENLICSKYTDLLRIALMAED--EAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	836
1zcd_A	388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.89
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	99.85
3olq_A	319	Universal stress protein E; structural genomics, P	99.83
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.82
3loq_A	294	Universal stress protein; structural genomics, PSI	99.81
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	99.78
3fdx_A	143	Putative filament protein / universal stress PROT;	99.17
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	99.15
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	99.13
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	99.11
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	99.1
2z08_A	137	Universal stress protein family; uncharacterized c	99.1
3tnj_A	150	Universal stress protein (USP); structural genomic	99.08
3dlo_A	155	Universal stress protein; unknown function, struct	99.07
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	99.07
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	99.06
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	99.05
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	99.03
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	99.03
3fg9_A	156	Protein of universal stress protein USPA family; A	99.02
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	99.02
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	99.02
2z08_A	137	Universal stress protein family; uncharacterized c	99.01
3dlo_A	155	Universal stress protein; unknown function, struct	99.01
3tnj_A	150	Universal stress protein (USP); structural genomic	98.99
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	98.99
3fdx_A	143	Putative filament protein / universal stress PROT;	98.97
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	98.97
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	98.93
3fg9_A	156	Protein of universal stress protein USPA family; A	98.93
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	98.76
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	98.74
3olq_A	319	Universal stress protein E; structural genomics, P	98.72
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	98.71
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	98.71
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	98.67
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	98.6
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	98.52
3loq_A	294	Universal stress protein; structural genomics, PSI	98.46
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	97.5
3g40_A	294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	96.31

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A

Probab=99.89  E-value=5.2e-24  Score=233.61  Aligned_cols=301  Identities=11%  Similarity=0.110  Sum_probs=215.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCcchh----hhccc--hhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256          110 FAQAASTIGGIYFVFINTVKMDKGMI----PRTIK--KTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS  183 (836)
Q Consensus       110 ~l~~l~~iGl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls  183 (836)
                      ....+.+-.+.+|||.+|+|+|.+.+    ++.+|  .....++.|+++|++++.    .+..  .  ...+.....+.+
T Consensus        59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~--~--~~~~~~gw~ip~  130 (388)
T 1zcd_A           59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNY--A--DPITREGWAIPA  130 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCC--S--STTHHHHTSSSS
T ss_pred             HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhc--C--ChhhhhhhHHHH
Confidence            45667888999999999999998866    55554  367889999999998832    2221  1  123566677778


Q ss_pred             cccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256          184 KCAYPVLVDAISELKL-LNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW  261 (836)
Q Consensus       184 ~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~  261 (836)
                      .|+.+....++..++. .++..++.+++.|++||+.+|++++ +++   ++.+  ..+... .+++.++.         +
T Consensus       131 ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~--~~~l~~-~~~~~~~~---------~  195 (388)
T 1zcd_A          131 ATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLS--MASLGV-AAVAIAVL---------A  195 (388)
T ss_dssp             CCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCC--HHHHHH-HHHHHHHH---------H
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcc--HHHHHH-HHHHHHHH---------H
Confidence            8999999999999764 4566679999999999999999999 654   1111  111111 11111111         2


Q ss_pred             HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC----CchhhHHHHHHHHHHHHHHHHH-H
Q 003256          262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP----PLGSALVEKSEAILSNFFLPFF-Y  336 (836)
Q Consensus       262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~----~~~~~l~~kl~~~~~~~flPlF-F  336 (836)
                      +.+|..    +++...+.++.  +.+.+.++..|+|+++|+|++|+++|..+    +..+++++++++++..+++|+| |
T Consensus       196 ~l~r~~----v~~~~~y~~lg--l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaF  269 (388)
T 1zcd_A          196 VLNLCG----ARRTGVYILVG--VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAF  269 (388)
T ss_dssp             HHHHTT----CCCTHHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHhc----chhHHHHHHHH--HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223321    12233344332  24457779999999999999999999853    3467899999999999999999 9


Q ss_pred             HHhhccccccccchhhHHHHHHHHHHHHHHHHHHH----HHHHHhhc------CCChHHHHHHHHHhhhhhhHHHHHHhh
Q 003256          337 IHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVA----SILATTCF------RTSFRNALLFSCFVNIKGVSELVTFLR  406 (836)
Q Consensus       337 ~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~----~~l~~~~~------~~~~real~lg~~m~~rG~v~l~~~~~  406 (836)
                      +..|+++|...+..... .....+++..+++|++|    +++..|+.      |++|+|...+|++++.+++++++++++
T Consensus       270 anaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~l  348 (388)
T 1zcd_A          270 ANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASL  348 (388)
T ss_dssp             HHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHH
T ss_pred             HhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHH
Confidence            99999999853321111 11223444558899988    55555555      999999999999999999999999999


Q ss_pred             hhhccc--cchhhHHHHHHHHHHHHHhHHHHHHHhc
Q 003256          407 WRQREL--IDVQTYSVLVLTNLAVTAIVTPLISVYY  440 (836)
Q Consensus       407 ~~~~~i--i~~~~~~~~vl~~lv~t~i~~plv~~l~  440 (836)
                      +++.+.  +.++.+..+++++++++++.+.++++.+
T Consensus       349 af~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~  384 (388)
T 1zcd_A          349 AFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL  384 (388)
T ss_dssp             HSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred             hccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998876  3567788888888887776666666544

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=99.85  E-value=3.7e-20  Score=199.19  Aligned_cols=255  Identities=11%  Similarity=0.055  Sum_probs=178.1

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND  542 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  542 (836)
                      -|||+|++.+++....++.+..++...  +..++++|+++      |     +.     .....++..+.+   ..   .
T Consensus         8 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~------~-----~~-----~~~~l~~~~~~~---~~---~   63 (290)
T 3mt0_A            8 RSILVVIEPDQLEGLALKRAQLIAGVT--QSHLHLLVCEK------R-----RD-----HSAALNDLAQEL---RE---E   63 (290)
T ss_dssp             CEEEEECCSSCSCCHHHHHHHHHHHHH--CCEEEEEEECS------S-----SC-----CHHHHHHHHHHH---HH---T
T ss_pred             ceEEEEeCCCccchHHHHHHHHHHHhc--CCeEEEEEeeC------c-----HH-----HHHHHHHHHHHH---hh---C
Confidence            489999999999999999988887543  56899999986      1     10     111122333322   22   3


Q ss_pred             ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCC
Q 003256          543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSA  622 (836)
Q Consensus       543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~  622 (836)
                      ++.++.....  .++.++.|++.|++.++||||||+|++++.   ++..+|++.++|++++||||.+ +..+..      
T Consensus        64 ~~~~~~~~~~--~g~~~~~i~~~a~~~~~dliV~G~~~~~~~---~~~~~gs~~~~vl~~~~~PVlv-v~~~~~------  131 (290)
T 3mt0_A           64 GYSVSTNQAW--KDSLHQTIIAEQQAEGCGLIIKQHFPDNPL---KKAILTPDDWKLLRFAPCPVLM-TKTARP------  131 (290)
T ss_dssp             TCCEEEEEEC--SSSHHHHHHHHHHHHTCSEEEEECCCSCTT---STTSCCHHHHHHHHHCSSCEEE-ECCCSC------
T ss_pred             CCeEEEEEEe--CCCHHHHHHHHHHhcCCCEEEEecccCCch---hhcccCHHHHHHHhcCCCCEEE-ecCCCC------
Confidence            4666655543  357899999999999999999999987544   3347999999999999999865 332222      


Q ss_pred             CCCCcccEEEEEccCCcc-------hHHHHHHHHHhhcCCCeEEEEEEEeecCCcc-------cchhhhhhHHHHHHHHH
Q 003256          623 KPANFCYNVAVFFIGGPD-------DREAMALVSHMSSNPGVRITLSRIYLEENLV-------EEEDDKCLDEVVMNDFM  688 (836)
Q Consensus       623 ~~~~~~~~I~v~f~Gg~d-------dreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~-------~~~~e~~~d~~~l~~~~  688 (836)
                        . ..++|+++++|++.       ++.|+++|.++|+..+++++++|+.++....       ..+..++..++.++++.
T Consensus       132 --~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  208 (290)
T 3mt0_A          132 --W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQ  208 (290)
T ss_dssp             --S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred             --C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHH
Confidence              1 36799999999998       8999999999999999999999998753211       01112333446677776


Q ss_pred             hhcCCCCCEEEEEEEcCChHHHHHHHHhc--ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcc
Q 003256          689 ASNFGNPNVVCRRIDANDSNQLVNAFRSL--VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMV  766 (836)
Q Consensus       689 ~~~~~~~~v~y~e~~v~~g~~~~~~i~~~--~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~  766 (836)
                      ++..- ..+.+.   +..|. ..+.|.+.  ..++||+|||++++.      |+.+|    -+|.+.+.+..    .+++
T Consensus       209 ~~~g~-~~~~~~---v~~g~-~~~~I~~~a~~~~~dLiVmG~~g~~------~~~~~----~~Gsv~~~vl~----~~~~  269 (290)
T 3mt0_A          209 AEYGF-SDEQLH---IEEGP-ADVLIPRTAQKLDAVVTVIGTVART------GLSGA----LIGNTAEVVLD----TLES  269 (290)
T ss_dssp             HHHTC-CTTTEE---EEESC-HHHHHHHHHHHHTCSEEEEECCSSC------CGGGC----CSCHHHHHHHT----TCSS
T ss_pred             HHcCC-CcceEE---EeccC-HHHHHHHHHHhcCCCEEEECCCCCc------CCcce----ecchHHHHHHh----cCCC
Confidence            66521 122222   11232 22333322  256999999999887      77776    69999999995    5889


Q ss_pred             eEEEEeecc
Q 003256          767 SVLVIQSVR  775 (836)
Q Consensus       767 SvLvvqq~~  775 (836)
                      +||||+.+.
T Consensus       270 pVLvv~~~~  278 (290)
T 3mt0_A          270 DVLVLKPDD  278 (290)
T ss_dssp             EEEEECCHH
T ss_pred             CEEEECCCC
Confidence            999998653

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=99.83  E-value=6e-20  Score=199.94  Aligned_cols=276  Identities=11%  Similarity=0.015  Sum_probs=180.8

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccc-c-ccCchHHHHHHHHHHhhcC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTK-A-MANSTDHIMRAVIKYAEGS  540 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~-~-~~~~~~~i~~af~~~~~~~  540 (836)
                      -|||+|++.+++....++.+..++...  ...++++|+++......+-.......+.. . .....++.++.+.....  
T Consensus         8 k~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--   83 (319)
T 3olq_A            8 QNLLVVIDPNQDDQPALRRAVYIVQRN--GGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYL--   83 (319)
T ss_dssp             CEEEEECCTTCSCCHHHHHHHHHHHHH--CCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ceEEEEECCCcccHHHHHHHHHHHHHc--CCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            489999999999999999888877543  56899999986321100000000000000 0 01112222222222111  


Q ss_pred             CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCC
Q 003256          541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSN  620 (836)
Q Consensus       541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~  620 (836)
                      ..++.++.....  .++..+.|++.|++.++||||||+|++++.   ++..+|++.++|++++||||.| +.++..    
T Consensus        84 ~~~v~~~~~~~~--~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~---~~~~~Gs~~~~vl~~~~~PVlv-v~~~~~----  153 (319)
T 3olq_A           84 EAGIQIDIKVIW--HNRPYEAIIEEVITDKHDLLIKMAHQHDKL---GSLIFTPLDWQLLRKCPAPVWM-VKDKEW----  153 (319)
T ss_dssp             HTTCCEEEEEEE--CSCHHHHHHHHHHHHTCSEEEEEEBCC--C---CSCBCCHHHHHHHHHCSSCEEE-EESSCC----
T ss_pred             hcCCeEEEEEEe--cCChHHHHHHHHHhcCCCEEEEecCcCchh---hcccccccHHHHHhcCCCCEEE-ecCccc----
Confidence            235666666552  368999999999999999999999987544   3347999999999999999975 333321    


Q ss_pred             CCCCCCcccEEEEEccCCcc-------hHHHHHHHHHhhcCC--CeEEEEEEEeecCCcc-------c-----chhhhhh
Q 003256          621 SAKPANFCYNVAVFFIGGPD-------DREAMALVSHMSSNP--GVRITLSRIYLEENLV-------E-----EEDDKCL  679 (836)
Q Consensus       621 ~~~~~~~~~~I~v~f~Gg~d-------dreAL~~A~rmA~~~--~~~Ltvvrv~~~~~~~-------~-----~~~e~~~  679 (836)
                           ...++|+++++|+++       ++.|+++|.++|+..  +++++++|+.++....       .     .+..++.
T Consensus       154 -----~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (319)
T 3olq_A          154 -----PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQ  228 (319)
T ss_dssp             -----CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHH
T ss_pred             -----ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHH
Confidence                 136799999999995       599999999999887  9999999998753221       0     0111233


Q ss_pred             HHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhc
Q 003256          680 DEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLAS  758 (836)
Q Consensus       680 d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las  758 (836)
                      .++.++++.+++.. ..+.+.   +..|.....+++.. ..++||+|||++++.      |+.+|    -+|.+.+.+..
T Consensus       229 ~~~~l~~~~~~~~~-~~~~~~---v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~------~~~~~----~~Gsv~~~vl~  294 (319)
T 3olq_A          229 HLIAMKELRQKFSI-PEEKTH---VKEGLPEQVIPQVCEELNAGIVVLGILGRT------GLSAA----FLGNTAEQLID  294 (319)
T ss_dssp             HHHHHHHHHHHTTC-CGGGEE---EEESCHHHHHHHHHHHTTEEEEEEECCSCC------STHHH----HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC-CcccEE---EecCCcHHHHHHHHHHhCCCEEEEeccCcc------CCccc----cccHHHHHHHh
Confidence            45667777766522 222222   12232222333322 257899999999887      77766    69999999995


Q ss_pred             cCCCCCcceEEEEeecc
Q 003256          759 ADFAEGMVSVLVIQSVR  775 (836)
Q Consensus       759 ~d~~~~~~SvLvvqq~~  775 (836)
                          .++++||||+.+.
T Consensus       295 ----~~~~pVLvv~~~~  307 (319)
T 3olq_A          295 ----HIKCDLLAIKPDG  307 (319)
T ss_dssp             ----TCCSEEEEECCTT
T ss_pred             ----hCCCCEEEECCCC
Confidence                5889999998764

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=99.82  E-value=2e-19  Score=195.18  Aligned_cols=277  Identities=15%  Similarity=0.125  Sum_probs=178.6

Q ss_pred             cceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccc-hhcccccccccccCchHHHHHHH-HHHhhc
Q 003256          462 ELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPV-VETYSTQKTKAMANSTDHIMRAV-IKYAEG  539 (836)
Q Consensus       462 elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~-~~~~~~~~~~~~~~~~~~i~~af-~~~~~~  539 (836)
                      .-+||+|++.+++...+++.+..++...  ...++++|+++......+. ....+..+.  .....++.++.+ +.+++.
T Consensus        19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~   94 (309)
T 3cis_A           19 SLGIIVGIDDSPAAQVAVRWAARDAELR--KIPLTLVHAVSPEVATWLEVPLPPGVLRW--QQDHGRHLIDDALKVVEQA   94 (309)
T ss_dssp             TTEEEEECCSSHHHHHHHHHHHHHHHHH--TCCEEEEEECCCCCCCTTCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHHHHhc--CCcEEEEEEecCcccccccCCCCchhhHH--HHHHHHHHHHHHHHHHHHh
Confidence            4589999999999999999887777433  4689999998732111010 000000000  011122333222 222221


Q ss_pred             C--CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCC
Q 003256          540 S--NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNN  617 (836)
Q Consensus       540 ~--~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~  617 (836)
                      .  ..++.++..+.   .++..+.|++.|+  ++||||||.|++++.   .+..+|++.++|++++||||.|+ ......
T Consensus        95 ~~~~~~~~~~~~~~---~g~~~~~I~~~a~--~~DliV~G~~g~~~~---~~~~~Gs~~~~vl~~~~~PVlvv-~~~~~~  165 (309)
T 3cis_A           95 SLRAGPPTVHSEIV---PAAAVPTLVDMSK--DAVLMVVGCLGSGRW---PGRLLGSVSSGLLRHAHCPVVII-HDEDSV  165 (309)
T ss_dssp             CSSSCCSCEEEEEE---SSCHHHHHHHHGG--GEEEEEEESSCTTCC---TTCCSCHHHHHHHHHCSSCEEEE-CTTCCC
T ss_pred             cccCCCceEEEEEe---cCCHHHHHHHHhc--CCCEEEECCCCCccc---cccccCcHHHHHHHhCCCCEEEE-cCCccc
Confidence            0  11456665544   3689999999996  899999999987554   33479999999999999999653 332210


Q ss_pred             CCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc---cc--hhhhhhHHHHHHHHHhhcC
Q 003256          618 CSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV---EE--EDDKCLDEVVMNDFMASNF  692 (836)
Q Consensus       618 ~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~---~~--~~e~~~d~~~l~~~~~~~~  692 (836)
                       .    .....++|+++++|++.++.|+++|.++|+..+++++++|+.++....   ..  +..++..++.+++......
T Consensus       166 -~----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  240 (309)
T 3cis_A          166 -M----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQ  240 (309)
T ss_dssp             -S----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHH
T ss_pred             -C----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence             0    012357999999999999999999999999999999999998753211   00  1112223344554443321


Q ss_pred             ---CCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEE
Q 003256          693 ---GNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVL  769 (836)
Q Consensus       693 ---~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvL  769 (836)
                         .+-.+.+.   +..|. ..+.|.+..+++||+|||++++.      ++.+|    -+|.+.+.+...    ++++||
T Consensus       241 ~~~~~~~~~~~---~~~g~-~~~~I~~~a~~adliV~G~~~~~------~~~~~----l~Gsv~~~vl~~----~~~pVl  302 (309)
T 3cis_A          241 ERYPNVAITRV---VVRDQ-PARQLVQRSEEAQLVVVGSRGRG------GYAGM----LVGSVGETVAQL----ARTPVI  302 (309)
T ss_dssp             HHCTTSCEEEE---EESSC-HHHHHHHHHTTCSEEEEESSCSS------CCTTC----SSCHHHHHHHHH----CSSCEE
T ss_pred             hhCCCCcEEEE---EEcCC-HHHHHHHhhCCCCEEEECCCCCC------Ccccc----ccCcHHHHHHhc----CCCCEE
Confidence               12234432   33443 33444444458999999999886      77776    699999999964    789999


Q ss_pred             EEeec
Q 003256          770 VIQSV  774 (836)
Q Consensus       770 vvqq~  774 (836)
                      ||+.+
T Consensus       303 vv~~~  307 (309)
T 3cis_A          303 VARES  307 (309)
T ss_dssp             EECC-
T ss_pred             EeCCC
Confidence            99753

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=99.81  E-value=5.1e-20  Score=198.38  Aligned_cols=265  Identities=11%  Similarity=0.062  Sum_probs=176.6

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhccccccc-ccccCchHHHHHHHHHHhhcCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKT-KAMANSTDHIMRAVIKYAEGSN  541 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~-~~~~~~~~~i~~af~~~~~~~~  541 (836)
                      -|||+|++.+++...+++.+..++..  ....++++|+++...... ........+. .......++.++.+.+..+.  
T Consensus        23 ~~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--   97 (294)
T 3loq_A           23 NAMLLPTDLSENSFKVLEYLGDFKKV--GVEEIGVLFVINLTKLST-VSGGIDIDHYIDEMSEKAEEVLPEVAQKIEA--   97 (294)
T ss_dssp             CEEEEECCSCTGGGGGGGGHHHHHHT--TCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ccEEEecCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCccccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            48999999999999999988888744  367999999998653211 1000000000 00112233344444333222  


Q ss_pred             CceeEEE-EEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCC
Q 003256          542 DAVTIQP-FIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSN  620 (836)
Q Consensus       542 ~~v~v~~-~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~  620 (836)
                      .++.++. .+.  ..++..+.|  .|+++++||||||.|++++.   .+..+|++.++|++++||||.| +.++...   
T Consensus        98 ~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~---~~~~~Gs~~~~vl~~~~~PVlv-v~~~~~~---  166 (294)
T 3loq_A           98 AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKF---KKILLGSVSEGVLHDSKVPVYI-FKHDMVV---  166 (294)
T ss_dssp             TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHH---HHHHHCCHHHHHHHHCSSCEEE-ECCCTTT---
T ss_pred             cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccc---cceeeccHHHHHHhcCCCCEEE-ecCcccc---
Confidence            3466655 222  135788999  99999999999999977443   3447899999999999999965 4433210   


Q ss_pred             CCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEE
Q 003256          621 SAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCR  700 (836)
Q Consensus       621 ~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~  700 (836)
                          ....++|+++++|++.+++|+++|.++|+..+++++++++.++..      .++.-++..+.+...   +-.+.+.
T Consensus       167 ----~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~~~~~~l~~~---~~~~~~~  233 (294)
T 3loq_A          167 ----NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLRVMEEVIGAE---GIEVHVH  233 (294)
T ss_dssp             ----TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHHHHHHHHHHT---TCCEEEE
T ss_pred             ----CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHHHHHHHHHHc---CCcEEEE
Confidence                123679999999999999999999999999999999999987533      111112222233221   2234432


Q ss_pred             EEEcCChHHHHHHHHhc--ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeec
Q 003256          701 RIDANDSNQLVNAFRSL--VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSV  774 (836)
Q Consensus       701 e~~v~~g~~~~~~i~~~--~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~  774 (836)
                         +..| +..+.|.+.  ..++||+|||++++.      ++.+|    -+|...+.+...    ++++||||++.
T Consensus       234 ---~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~~----~~~pvLvv~~~  291 (294)
T 3loq_A          234 ---IESG-TPHKAILAKREEINATTIFMGSRGAG------SVMTM----ILGSTSESVIRR----SPVPVFVCKRG  291 (294)
T ss_dssp             ---EECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH----HHHCHHHHHHHH----CSSCEEEECSC
T ss_pred             ---EecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce----eeCcHHHHHHhc----CCCCEEEECCC
Confidence               3344 333444433  257999999999876      66665    699999999964    88999999876

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=99.78  E-value=2.3e-18  Score=182.69  Aligned_cols=255  Identities=13%  Similarity=0.112  Sum_probs=167.5

Q ss_pred             eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCcc-chhc----ccc---cc--cccccCchHHHHHHH
Q 003256          464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAP-VVET----YST---QK--TKAMANSTDHIMRAV  533 (836)
Q Consensus       464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p-~~~~----~~~---~~--~~~~~~~~~~i~~af  533 (836)
                      |||+|++.+++...+++.+..++...  +..++++|+++......+ ....    .+.   ++  ........++.++.+
T Consensus         2 ~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (268)
T 3ab8_A            2 RILLATDGSPQARGAEALAEWLAYKL--SAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV   79 (268)
T ss_dssp             CEEEECCSCGGGHHHHHHHHHHHHHH--TCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEcCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999988887533  568999999875421000 0000    000   00  000111223344444


Q ss_pred             HHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCC-CcccccchhhhHHHHHHhccCCcceEEEEc
Q 003256          534 IKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPN-EETEGRAACLHGLNNNVLGYAPCTVGIFVD  612 (836)
Q Consensus       534 ~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~-g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvd  612 (836)
                      .+..+.  .++.++.....   ++..+.|++.  +.++||||||.|+++ +.   .+..+||+.++|++++||||.| +.
T Consensus        80 ~~~~~~--~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~---~~~~~Gs~~~~v~~~a~~PVlv-v~  148 (268)
T 3ab8_A           80 RQSALA--AGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGD---GFGGLGSTADRVLRASPVPVLL-AP  148 (268)
T ss_dssp             HHHHHH--TTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCT---TCCSCCHHHHHHHHHCSSCEEE-EC
T ss_pred             HHHHHh--CCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccc---cccccchhHHHHHHhCCCCEEE-EC
Confidence            333222  24556655543   5799999999  999999999999875 44   3347999999999999999965 43


Q ss_pred             CCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcC
Q 003256          613 KRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNF  692 (836)
Q Consensus       613 rg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~  692 (836)
                      ++..          ..++|+++++|++.++.|+++|.++|+..+++++++|+.++.+    +     .++.++++.....
T Consensus       149 ~~~~----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~----~-----~~~~l~~~~~~l~  209 (268)
T 3ab8_A          149 GEPV----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA----R-----AEAWALEAEAYLR  209 (268)
T ss_dssp             SSCC----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH----H-----HHHHHHHHHHHHH
T ss_pred             CCCC----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH----H-----HHHHHHHHHHHHH
Confidence            3221          2469999999999999999999999999999999999986421    1     1122333332221


Q ss_pred             -CCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEE
Q 003256          693 -GNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVI  771 (836)
Q Consensus       693 -~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvv  771 (836)
                       .+-++.+.   +..|. ..+.|.+..+++||++||+          |+.+|    -+|.+.+.+...    ++++||||
T Consensus       210 ~~~~~~~~~---~~~g~-~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~----~~~pvlvv  267 (268)
T 3ab8_A          210 DHGVEASAL---VLGGD-AADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN----AQGPVLTA  267 (268)
T ss_dssp             HTTCCEEEE---EECSC-HHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH----CSSCEEEE
T ss_pred             HcCCceEEE---EeCCC-hHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc----CCCCEEEe
Confidence             12234432   33453 3344444444449999999          33343    689999999964    88999998


Q ss_pred             e
Q 003256          772 Q  772 (836)
Q Consensus       772 q  772 (836)
                      +
T Consensus       268 ~  268 (268)
T 3ab8_A          268 R  268 (268)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=99.17  E-value=1e-10  Score=111.00  Aligned_cols=137  Identities=14%  Similarity=0.110  Sum_probs=91.0

Q ss_pred             ceeEEeecCCCC--hHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcC
Q 003256          463 LRILCGIHDEDH--ISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGS  540 (836)
Q Consensus       463 lriLvcv~~~~~--~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~  540 (836)
                      -|||+|++.+++  ...+++.+..++..  ....++++|+++......+.......... ......++..+.++++.+..
T Consensus         2 k~ILv~vD~s~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~   78 (143)
T 3fdx_A            2 NAILVPIDISDKEFTERIISHVESEARI--DDAEVHFLTVIPSLPYYASLGMAYTAELP-GMDELREGSETQLKEIAKKF   78 (143)
T ss_dssp             CEEEEECCTTCSSCCTTHHHHHHHHHHH--HTCEEEEEEEECC-----------------CHHHHHHHHHHHHHHHHTTS
T ss_pred             CEEEEEecCChHhhHHHHHHHHHHHHHh--cCCeEEEEEEecCCcccccccccccchhh-hHHHHHHHHHHHHHHHHHHc
Confidence            389999999999  88888887777643  35689999999864321111000000000 01122345566666665543


Q ss_pred             C-CceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          541 N-DAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       541 ~-~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                      . ..+.++.....   ++..+.|++.|++.++||||||.|+ ++.   .+..+||+.++|++++||||.|
T Consensus        79 ~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~-~~~---~~~~~Gs~~~~v~~~~~~pVlv  141 (143)
T 3fdx_A           79 SIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHR-PDI---TTYLLGSNAAAVVRHAECSVLV  141 (143)
T ss_dssp             CCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSC-TTC---CSCSSCHHHHHHHHHCSSEEEE
T ss_pred             CCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCC-CCC---eeeeeccHHHHHHHhCCCCEEE
Confidence            2 23555655554   5899999999999999999999994 443   3347999999999999999865

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=99.15  E-value=1.1e-10  Score=111.31  Aligned_cols=137  Identities=15%  Similarity=0.167  Sum_probs=92.7

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND  542 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  542 (836)
                      -|||+|++.+++...+++.+..++...  +..++++|+++........................++.++.+.+..+  ..
T Consensus         6 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~   81 (146)
T 3s3t_A            6 TNILVPVDSSDAAQAAFTEAVNIAQRH--QANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVA--TT   81 (146)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT--TS
T ss_pred             ceEEEEcCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHH--hc
Confidence            489999999999999999888877433  56899999998654321111000000000011223344444443322  23


Q ss_pred             ce-eEEEEEEEcCCcchHHHHHH-HHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          543 AV-TIQPFIMISQYETMHESICK-LVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       543 ~v-~v~~~t~vs~~~~m~~~I~~-~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                      ++ .++..+..   ++..+.|++ .|++.++||||||.|++++.   .+..+||+.++|++++||||.|
T Consensus        82 g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~---~~~~~Gs~~~~vl~~~~~pVlv  144 (146)
T 3s3t_A           82 SAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSP---HRVAVGSTTSYVVDHAPCNVIV  144 (146)
T ss_dssp             SCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCT---TTCSSCHHHHHHHHHCSSEEEE
T ss_pred             CCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCc---ceEEEcchHHHHhccCCCCEEE
Confidence            45 56655554   479999999 99999999999999987554   3347999999999999999865

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=99.13  E-value=1.7e-10  Score=109.82  Aligned_cols=129  Identities=10%  Similarity=0.045  Sum_probs=92.6

Q ss_pred             cccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc----------chhhhhhHHHHHHHHHhhcCCC-C
Q 003256          627 FCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE----------EEDDKCLDEVVMNDFMASNFGN-P  695 (836)
Q Consensus       627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~----------~~~e~~~d~~~l~~~~~~~~~~-~  695 (836)
                      ..++|+++++|+++++.|+++|.++|+..+++++++|+.++.....          .+..++..++.++++.+..... -
T Consensus         4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~   83 (146)
T 3s3t_A            4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSA   83 (146)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999999999999999999998633211          1122344556777777665332 1


Q ss_pred             -CEEEEEEEcCChHHHHHHHH-hc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          696 -NVVCRRIDANDSNQLVNAFR-SL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       696 -~v~y~e~~v~~g~~~~~~i~-~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                       .+.+.   +..|....++++ .. ..++||+|||++++.      ++.+|    -+|...+.+...    ++++||||+
T Consensus        84 ~~~~~~---~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~----~~~pVlvV~  146 (146)
T 3s3t_A           84 PNLKTE---ISYGIPKHTIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGSTTSYVVDH----APCNVIVIR  146 (146)
T ss_dssp             CCCEEE---EEEECHHHHHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHHHHHHHHH----CSSEEEEEC
T ss_pred             cceEEE---EecCChHHHHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcchHHHHhcc----CCCCEEEeC
Confidence             33433   233433334444 22 367999999999876      67665    699999999964    789999985

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=99.11  E-value=4.7e-10  Score=108.94  Aligned_cols=138  Identities=14%  Similarity=0.177  Sum_probs=90.9

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccC----CCccch-----h-ccc---cccc-ccccCchHH
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVG----RAAPVV-----E-TYS---TQKT-KAMANSTDH  528 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~----r~~p~~-----~-~~~---~~~~-~~~~~~~~~  528 (836)
                      -|||+|++.+++...+++.+..++...  ...++++|+++...    ...+..     . ..+   ..+. .......++
T Consensus         6 ~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (162)
T 1mjh_A            6 KKILYPTDFSETAEIALKHVKAFKTLK--AEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   83 (162)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTCCSS--CCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence            489999999999999999998888543  67999999998540    000110     0 110   0000 001112233


Q ss_pred             HHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceE
Q 003256          529 IMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVG  608 (836)
Q Consensus       529 i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVg  608 (836)
                      .++.+.+..+.  .++.++..+..   ++.++.|++.|++.++||||||.|++++.   .+..+||+.++|++++||||.
T Consensus        84 ~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~---~~~~~GSv~~~vl~~~~~pVl  155 (162)
T 1mjh_A           84 KMENIKKELED--VGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNL---KEILLGSVTENVIKKSNKPVL  155 (162)
T ss_dssp             HHHHHHHHHHH--TTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCC---TTCSSCHHHHHHHHHCCSCEE
T ss_pred             HHHHHHHHHHH--cCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCc---cceEecchHHHHHHhCCCCEE
Confidence            33333222121  34666655443   58999999999999999999999988554   334799999999999999997


Q ss_pred             EE
Q 003256          609 IF  610 (836)
Q Consensus       609 Il  610 (836)
                      |+
T Consensus       156 vv  157 (162)
T 1mjh_A          156 VV  157 (162)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=99.10  E-value=9.3e-11  Score=111.72  Aligned_cols=136  Identities=12%  Similarity=0.124  Sum_probs=90.6

Q ss_pred             eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccch--hccccccc-cc-ccCchHHHHHHHHHHhhc
Q 003256          464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVV--ETYSTQKT-KA-MANSTDHIMRAVIKYAEG  539 (836)
Q Consensus       464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~--~~~~~~~~-~~-~~~~~~~i~~af~~~~~~  539 (836)
                      |||+|++.+++...+++.+..++...  +..++++|+++.........  ......+. .. .....++.++.+.+..+.
T Consensus         4 ~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (147)
T 3hgm_A            4 RIMVPVDGSKGAVKALEKGVGLQQLT--GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE   81 (147)
T ss_dssp             EEEEECCSBHHHHHHHHHHHHHHHHH--CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999888777533  56899999987542000000  00000000 00 112234444444443332


Q ss_pred             CCCceeE---EEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          540 SNDAVTI---QPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       540 ~~~~v~v---~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                        .++.+   +.....   ++..+.|++.|++.++||||||.|++++..   +..+||+.++|++++||||.|
T Consensus        82 --~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~---~~~~Gs~~~~vl~~~~~pVlv  146 (147)
T 3hgm_A           82 --LGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDK---SLLLGSVAQRVAGSAHCPVLV  146 (147)
T ss_dssp             --TTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCS---CCCCCHHHHHHHHHCSSCEEE
T ss_pred             --cCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCcccc---ceeeccHHHHHHhhCCCCEEE
Confidence              24444   544443   589999999999999999999999885543   347999999999999999865

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=99.10  E-value=1.9e-10  Score=108.46  Aligned_cols=132  Identities=16%  Similarity=0.129  Sum_probs=86.8

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND  542 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  542 (836)
                      -|||+|++.+++...+++.+..++...  ...++++|+++....  +. .....++.  .....++..+.++++.+.  .
T Consensus         3 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~--~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~--~   73 (137)
T 2z08_A            3 KTILLAYDGSEHARRAAEVAKAEAEAH--GARLIVVHAYEPVPD--YL-GEPFFEEA--LRRRLERAEGVLEEARAL--T   73 (137)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEECC-------------------CHHHHHHHHHHHHHHHH--H
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCCCc--cc-cccchHHH--HHHHHHHHHHHHHHHHHH--c
Confidence            389999999999999998888777433  568999999873211  11 00000000  011112333344444332  2


Q ss_pred             ce-eEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          543 AV-TIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       543 ~v-~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                      ++ .++..+..   ++..+.|++.|++.++||||||.|++++.   .+..+||+.++|++++||||.|
T Consensus        74 g~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~---~~~~~Gs~~~~vl~~~~~pVlv  135 (137)
T 2z08_A           74 GVPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGAL---GSLFLGSQSQRVVAEAPCPVLL  135 (137)
T ss_dssp             CCCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCC---SCSSSCHHHHHHHHHCSSCEEE
T ss_pred             CCCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchh---hhhhhccHHHHHHhcCCCCEEE
Confidence            34 44444432   58999999999999999999999987554   3347999999999999999865

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=99.08  E-value=2.4e-10  Score=109.47  Aligned_cols=137  Identities=14%  Similarity=0.151  Sum_probs=83.3

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhccccccccc-ccCchHHHHHHHHHHhhcCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKA-MANSTDHIMRAVIKYAEGSN  541 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~  541 (836)
                      -|||+|++.+++...+++.+..++...  ...++++|+++......+............ .....++..+.++++.+.. 
T Consensus         7 ~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-   83 (150)
T 3tnj_A            7 HHILLAVDFSSEDSQVVQKVRNLASQI--GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL-   83 (150)
T ss_dssp             SEEEEECCCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc-
Confidence            489999999999999999988887543  568999999875321100000000000000 1111233344444443322 


Q ss_pred             Ccee-EEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          542 DAVT-IQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       542 ~~v~-v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                       ++. ++.....   ++..+.|++.|++.++||||||.|++++.   . ..+||+.++|++++||||.|+
T Consensus        84 -~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~---~-~~~Gs~~~~vl~~~~~pVlvv  145 (150)
T 3tnj_A           84 -GIDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGL---A-LLLGSTANSVLHYAKCDVLAV  145 (150)
T ss_dssp             -TCCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC------------CCCHHHHHHHHCSSEEEEE
T ss_pred             -CCCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCc---C-eEecchHHHHHHhCCCCEEEE
Confidence             222 2333332   58999999999999999999999987554   3 489999999999999999764

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=99.07  E-value=2.7e-10  Score=110.37  Aligned_cols=130  Identities=10%  Similarity=0.127  Sum_probs=90.7

Q ss_pred             cceeEEeecC-CCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcC
Q 003256          462 ELRILCGIHD-EDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGS  540 (836)
Q Consensus       462 elriLvcv~~-~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~  540 (836)
                      --|||+|++. ++....+++.+..++...  ...++++|+++.....     . +.     .....++.++.+.+..+. 
T Consensus        24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~-----~-~~-----~~~~~~~~l~~~~~~~~~-   89 (155)
T 3dlo_A           24 YMPIVVAVDKKSDRAERVLRFAAEEARLR--GVPVYVVHSLPGGGRT-----K-DE-----DIIEAKETLSWAVSIIRK-   89 (155)
T ss_dssp             CCCEEEECCSSSHHHHHHHHHHHHHHHHH--TCCEEEEEEECCSTTS-----C-HH-----HHHHHHHHHHHHHHHHHH-
T ss_pred             cCeEEEEECCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEcCCCcc-----c-HH-----HHHHHHHHHHHHHHHHHh-
Confidence            4589999999 999999999988887543  4588999998754211     0 10     111223333333333222 


Q ss_pred             CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                       .++.++..+.+ ..++..+.|++.|++.++||||||.|++++.   .+..+||+.++|++++||||.|+
T Consensus        90 -~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~---~~~~lGSv~~~vl~~a~~PVLvV  154 (155)
T 3dlo_A           90 -EGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPT---GKLIFGSVARDVILKANKPVICI  154 (155)
T ss_dssp             -TTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTT---SCEECCHHHHHHHHHCSSCEEEE
T ss_pred             -cCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCC---CCEEeccHHHHHHHhCCCCEEEe
Confidence             23444544444 2368999999999999999999999987554   33479999999999999998653

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=99.07  E-value=5.7e-10  Score=109.32  Aligned_cols=138  Identities=11%  Similarity=0.057  Sum_probs=89.1

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccc-hhc-------cccccc-ccccCchHHHHHHH
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPV-VET-------YSTQKT-KAMANSTDHIMRAV  533 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~-~~~-------~~~~~~-~~~~~~~~~i~~af  533 (836)
                      -|||+|++.+++...+++.+..++...  ...++++|+++........ -..       .+..+. .......++.++.+
T Consensus         6 ~~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (170)
T 2dum_A            6 RKVLFPTDFSEGAYRAVEVFEKRNKME--VGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK   83 (170)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHCCSC--CSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999998888543  5789999998753211000 000       000000 00111122333333


Q ss_pred             HHHhhcCCCceeEEE--EEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          534 IKYAEGSNDAVTIQP--FIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       534 ~~~~~~~~~~v~v~~--~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                      .+..+.  .++.++.  .+..   .+.++.|++.|++.++||||||.|++++.   .+..+|++.++|++++||||.|+
T Consensus        84 ~~~~~~--~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~---~~~~~Gsv~~~vl~~~~~PVlvv  154 (170)
T 2dum_A           84 AEEVKR--AFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSL---SHEFLGSTVMRVLRKTKKPVLII  154 (170)
T ss_dssp             HHHHHH--HTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC-----TTCCCHHHHHHHHHCSSCEEEE
T ss_pred             HHHHHH--cCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCcc---ccceechHHHHHHHhCCCCEEEE
Confidence            222111  1344554  3332   58999999999999999999999987554   33479999999999999999764

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=99.06  E-value=4.7e-10  Score=109.59  Aligned_cols=136  Identities=12%  Similarity=0.057  Sum_probs=89.9

Q ss_pred             cceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEE--EEeeccCCCccchh-cccccccccccCchHHHHHHHHHHhh
Q 003256          462 ELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVV--HLVELVGRAAPVVE-TYSTQKTKAMANSTDHIMRAVIKYAE  538 (836)
Q Consensus       462 elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~l--hlvel~~r~~p~~~-~~~~~~~~~~~~~~~~i~~af~~~~~  538 (836)
                      .-|||+|++.+++...+++.+..++. .  ...++++  |+++......+... ..+..+.  .....++.++.+.+..+
T Consensus        17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~--~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~   91 (163)
T 1tq8_A           17 YKTVVVGTDGSDSSMRAVDRAAQIAG-A--DAKLIIASAYLPQHEDARAADILKDESYKVT--GTAPIYEILHDAKERAH   91 (163)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHT-T--TSEEEEEEECCC----------------------CCTHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHHhC-C--CCEEEEEEeeeccCcccccccccccHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            45899999999999999999888875 3  5789999  88764321011100 0000000  12234445544444322


Q ss_pred             cCCCcee-EEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          539 GSNDAVT-IQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       539 ~~~~~v~-v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                      .  .++. ++..+..   .+..+.|++.|++.++||||||.|++++.   .+..+||+.++|++++||||.|+
T Consensus        92 ~--~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~---~~~~lGSva~~vl~~a~~PVlvV  156 (163)
T 1tq8_A           92 N--AGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTI---AGRLLGSVPANVSRRAKVDVLIV  156 (163)
T ss_dssp             T--TTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSH---HHHHTBBHHHHHHHHTTCEEEEE
T ss_pred             H--cCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcc---cceeeccHHHHHHHhCCCCEEEE
Confidence            2  3455 6655443   68999999999999999999999988554   44589999999999999999764

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=99.05  E-value=5.8e-10  Score=105.10  Aligned_cols=125  Identities=13%  Similarity=0.074  Sum_probs=88.7

Q ss_pred             cEEEEEccCCcchHHHHHHHHHhh-cCCCeEEEEEEEeecCCccc---------chhhh-hhHHHHHHHHHhhcCC-CCC
Q 003256          629 YNVAVFFIGGPDDREAMALVSHMS-SNPGVRITLSRIYLEENLVE---------EEDDK-CLDEVVMNDFMASNFG-NPN  696 (836)
Q Consensus       629 ~~I~v~f~Gg~ddreAL~~A~rmA-~~~~~~Ltvvrv~~~~~~~~---------~~~e~-~~d~~~l~~~~~~~~~-~~~  696 (836)
                      ++|+++++|++.++.|+++|.++| +..+++++++|+.++.....         .+..+ +..++.++++.+.... +-+
T Consensus         2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~   81 (138)
T 3idf_A            2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN   81 (138)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            689999999999999999999999 99999999999998643211         01112 3445667777665432 223


Q ss_pred             EEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          697 VVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       697 v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                      +.+.   +..|.....+++... ++||+|||++++.      ++.+|    - |.+.+.+...    ++++||||+
T Consensus        82 ~~~~---v~~g~~~~~I~~~a~-~~dliV~G~~~~~------~~~~~----~-Gs~~~~vl~~----~~~pVlvv~  138 (138)
T 3idf_A           82 PFVV---IKEGEPVEMVLEEAK-DYNLLIIGSSENS------FLNKI----F-ASHQDDFIQK----APIPVLIVK  138 (138)
T ss_dssp             CEEE---EEESCHHHHHHHHHT-TCSEEEEECCTTS------TTSSC----C-CCTTCHHHHH----CSSCEEEEC
T ss_pred             eEEE---EecCChHHHHHHHHh-cCCEEEEeCCCcc------hHHHH----h-CcHHHHHHhc----CCCCEEEeC
Confidence            3322   333433334444434 9999999999876      66665    4 9999999964    789999984

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=99.03  E-value=1e-09  Score=108.18  Aligned_cols=142  Identities=8%  Similarity=0.075  Sum_probs=84.6

Q ss_pred             ceeEEeecCCC---------ChHHHHHHHHHhCCCC-CCCceEEEEEEeeccCCCcc----chh-ccccccccc-ccCch
Q 003256          463 LRILCGIHDED---------HISGIIHLIKASNPTE-MNPICAYVVHLVELVGRAAP----VVE-TYSTQKTKA-MANST  526 (836)
Q Consensus       463 lriLvcv~~~~---------~~~~li~L~~~~~~~~-~s~~~v~~lhlvel~~r~~p----~~~-~~~~~~~~~-~~~~~  526 (836)
                      -|||+|++.++         ....+++.+..+.... .....++++|+++.......    ... ..+.++... .....
T Consensus         6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (175)
T 2gm3_A            6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG   85 (175)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred             cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence            48999999999         8888999988765322 24678999999864321100    000 000000000 00112


Q ss_pred             HHHHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcc
Q 003256          527 DHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCT  606 (836)
Q Consensus       527 ~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCs  606 (836)
                      ++.++.+.+..+.  .++.++..+..   ++..+.|++.|++.++||||||.|++++.   .+..+||+.++|++++|||
T Consensus        86 ~~~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~---~~~~~Gsva~~vl~~a~~p  157 (175)
T 2gm3_A           86 LHLLEFFVNKCHE--IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRF---QKVFVGTVSAFCVKHAECP  157 (175)
T ss_dssp             HHHHHHHHHHHHH--HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHH--CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChh---hhhhcCchHHHHHhCCCCC
Confidence            2333333322111  24556555443   57999999999999999999999988554   3347999999999999999


Q ss_pred             eEEEEc
Q 003256          607 VGIFVD  612 (836)
Q Consensus       607 VgIlvd  612 (836)
                      |.|+..
T Consensus       158 Vlvv~~  163 (175)
T 2gm3_A          158 VMTIKR  163 (175)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            976543

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=99.03  E-value=5.5e-10  Score=105.31  Aligned_cols=131  Identities=11%  Similarity=0.077  Sum_probs=89.7

Q ss_pred             eeEEeecCCCChHHHHHHHHHhC-CCCCCCceEEEEEEeeccCCCccc-hhccccccccccc-CchHHHHHHHHHHhhcC
Q 003256          464 RILCGIHDEDHISGIIHLIKASN-PTEMNPICAYVVHLVELVGRAAPV-VETYSTQKTKAMA-NSTDHIMRAVIKYAEGS  540 (836)
Q Consensus       464 riLvcv~~~~~~~~li~L~~~~~-~~~~s~~~v~~lhlvel~~r~~p~-~~~~~~~~~~~~~-~~~~~i~~af~~~~~~~  540 (836)
                      |||+|++.+++...+++.+..++ ...  ...++++|+++........ ....+..+  ... ...++.++.+.+..+  
T Consensus         3 ~ILv~~D~s~~s~~al~~a~~la~~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~--   76 (138)
T 3idf_A            3 KLLFAIDDTEACERAAQYILDMFGKDA--DCTLTLIHVKPEFMLYGEAVLAAYDEIE--MKEEEKAKLLTQKFSTFFT--   76 (138)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEEEEEECCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHhccCC--CCEEEEEEEecCCCcccccccCcHHHHH--HHHHHHHHHHHHHHHHHHH--
Confidence            79999999999999999998887 443  5799999999865322110 00000000  011 223344444444333  


Q ss_pred             CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                      ..++.++.....   ++..+.|++.|+  ++||||||.|++++..   +.. ||+.++|++++||||.|
T Consensus        77 ~~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~~---~~~-Gs~~~~vl~~~~~pVlv  136 (138)
T 3idf_A           77 EKGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFLN---KIF-ASHQDDFIQKAPIPVLI  136 (138)
T ss_dssp             TTTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTTS---SCC-CCTTCHHHHHCSSCEEE
T ss_pred             HCCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchHH---HHh-CcHHHHHHhcCCCCEEE
Confidence            235666655554   579999999999  9999999999885542   235 99999999999999865

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=99.02  E-value=3.2e-10  Score=109.44  Aligned_cols=136  Identities=12%  Similarity=0.076  Sum_probs=89.6

Q ss_pred             cceeEEeec--CCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhc
Q 003256          462 ELRILCGIH--DEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEG  539 (836)
Q Consensus       462 elriLvcv~--~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~  539 (836)
                      --|||+|++  .+++....++.+..++...  +..++++|+++............+..+.  .....++.++.+.+..+.
T Consensus        15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~   90 (156)
T 3fg9_A           15 YRRILLTVDEDDNTSSERAFRYATTLAHDY--DVPLGICSVLESEDINIFDSLTPSKIQA--KRKHVEDVVAEYVQLAEQ   90 (156)
T ss_dssp             CC-EEEECCSCCCHHHHHHHHHHHHHHHHH--TCCEEEEEEECCCCTTCCCSSHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEeCCCccccccCCHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            358999999  9999999999887777543  5689999999865321100000000000  112223334333332221


Q ss_pred             CCCce-eEEEEEEEcCCcchHHHHHHH-HHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          540 SNDAV-TIQPFIMISQYETMHESICKL-VKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       540 ~~~~v-~v~~~t~vs~~~~m~~~I~~~-A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                        .++ .++.....  .++..+.|++. |++.++||||||.|++++. +  . .+||+.++|++++||||.|
T Consensus        91 --~g~~~~~~~v~~--~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~-~--~-~~Gs~~~~vl~~a~~PVlv  154 (156)
T 3fg9_A           91 --RGVNQVEPLVYE--GGDVDDVILEQVIPEFKPDLLVTGADTEFPH-S--K-IAGAIGPRLARKAPISVIV  154 (156)
T ss_dssp             --HTCSSEEEEEEE--CSCHHHHHHHTHHHHHCCSEEEEETTCCCTT-S--S-SCSCHHHHHHHHCSSEEEE
T ss_pred             --cCCCceEEEEEe--CCCHHHHHHHHHHHhcCCCEEEECCCCCCcc-c--e-eecchHHHHHHhCCCCEEE
Confidence              234 35555544  25899999999 9999999999999988554 2  2 7999999999999999865

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=99.02  E-value=1.1e-09  Score=106.30  Aligned_cols=130  Identities=12%  Similarity=0.006  Sum_probs=89.7

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecC-----C--cc--------cc---------hhhhhhHHHH
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEE-----N--LV--------EE---------EDDKCLDEVV  683 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~-----~--~~--------~~---------~~e~~~d~~~  683 (836)
                      .++|+++++|+++++.|+++|.++|+..+++++++|+.++.     .  ..        ..         +..++..++.
T Consensus         5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (162)
T 1mjh_A            5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   84 (162)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999998753     1  00        11         0112234456


Q ss_pred             HHHHHhhcCC-CCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCC
Q 003256          684 MNDFMASNFG-NPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADF  761 (836)
Q Consensus       684 l~~~~~~~~~-~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~  761 (836)
                      ++++.+.... +-++.+.   +..|.....+++.. ..++||||||++++.      ++.+|    -+|.+.+.+...  
T Consensus        85 l~~~~~~~~~~g~~~~~~---v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~------~~~~~----~~GSv~~~vl~~--  149 (162)
T 1mjh_A           85 MENIKKELEDVGFKVKDI---IVVGIPHEEIVKIAEDEGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK--  149 (162)
T ss_dssp             HHHHHHHHHHTTCEEEEE---EEEECHHHHHHHHHHHTTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH--
T ss_pred             HHHHHHHHHHcCCceEEE---EcCCCHHHHHHHHHHHcCCCEEEEcCCCCC------Cccce----EecchHHHHHHh--
Confidence            7776655422 1233322   33343222333332 257999999999876      77666    699999999974  


Q ss_pred             CCCcceEEEEeec
Q 003256          762 AEGMVSVLVIQSV  774 (836)
Q Consensus       762 ~~~~~SvLvvqq~  774 (836)
                        ++++||||+..
T Consensus       150 --~~~pVlvv~~~  160 (162)
T 1mjh_A          150 --SNKPVLVVKRK  160 (162)
T ss_dssp             --CCSCEEEECCC
T ss_pred             --CCCCEEEEeCC
Confidence              78999999753

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=99.02  E-value=5.8e-10  Score=106.13  Aligned_cols=127  Identities=14%  Similarity=0.127  Sum_probs=88.2

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCC----------ccc----chhhhhhHHHHHHHHHhhcCC
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEEN----------LVE----EEDDKCLDEVVMNDFMASNFG  693 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~----------~~~----~~~e~~~d~~~l~~~~~~~~~  693 (836)
                      .++|+++++|++.++.|+++|.++|++.+++++++|+.++..          ...    .+..++..++.++++.+....
T Consensus         2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (147)
T 3hgm_A            2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE   81 (147)
T ss_dssp             CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            469999999999999999999999999999999999987532          000    122234445666666654322


Q ss_pred             -CCCE---EEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceE
Q 003256          694 -NPNV---VCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSV  768 (836)
Q Consensus       694 -~~~v---~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~Sv  768 (836)
                       +-.+   .+.   +..|.....+++.. ..++||+|||++++.      ++.+|    -+|...+.+...    ++++|
T Consensus        82 ~g~~~~~~~~~---~~~g~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~----~~~pV  144 (147)
T 3hgm_A           82 LGVPADKVRAF---VKGGRPSRTIVRFARKRECDLVVIGAQGTN------GDKSL----LLGSVAQRVAGS----AHCPV  144 (147)
T ss_dssp             TTCCGGGEEEE---EEESCHHHHHHHHHHHTTCSEEEECSSCTT------CCSCC----CCCHHHHHHHHH----CSSCE
T ss_pred             cCCCccceEEE---EecCCHHHHHHHHHHHhCCCEEEEeCCCCc------cccce----eeccHHHHHHhh----CCCCE
Confidence             2122   422   22333222333332 257999999999876      66665    699999999964    78999


Q ss_pred             EEE
Q 003256          769 LVI  771 (836)
Q Consensus       769 Lvv  771 (836)
                      |||
T Consensus       145 lvV  147 (147)
T 3hgm_A          145 LVV  147 (147)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            986

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=99.01  E-value=9.1e-10  Score=103.79  Aligned_cols=126  Identities=13%  Similarity=0.090  Sum_probs=86.8

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCc--c---c---chhhhhhHHHHHHHHHhhcCCCC-CEE
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL--V---E---EEDDKCLDEVVMNDFMASNFGNP-NVV  698 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~--~---~---~~~e~~~d~~~l~~~~~~~~~~~-~v~  698 (836)
                      .++|+++++|+++++.|+++|.++|+..+++++++|+.++...  .   .   .+..++..++.++++.++.  +- ++.
T Consensus         2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~   79 (137)
T 2z08_A            2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT--GVPKED   79 (137)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH--CCCGGG
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc--CCCccE
Confidence            4699999999999999999999999999999999999874321  0   0   1112334456777776541  22 333


Q ss_pred             EEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          699 CRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       699 y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                      +..   ..|.....+++.. ..++||+|||++++.      ++.++    -+|...+.+...    ++++||||+
T Consensus        80 ~~~---~~g~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~----~~~pVlvv~  137 (137)
T 2z08_A           80 ALL---LEGVPAEAILQAARAEKADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE----APCPVLLVR  137 (137)
T ss_dssp             EEE---EESSHHHHHHHHHHHTTCSEEEEESSCTT------CCSCS----SSCHHHHHHHHH----CSSCEEEEC
T ss_pred             EEE---EecCHHHHHHHHHHHcCCCEEEECCCCCc------hhhhh----hhccHHHHHHhc----CCCCEEEeC
Confidence            332   2232222333322 257999999999876      66655    699999999964    789999984

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=99.01  E-value=6.1e-10  Score=107.86  Aligned_cols=130  Identities=8%  Similarity=0.012  Sum_probs=92.1

Q ss_pred             cccEEEEEccC-CcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCC-CCCEEEEEEEc
Q 003256          627 FCYNVAVFFIG-GPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFG-NPNVVCRRIDA  704 (836)
Q Consensus       627 ~~~~I~v~f~G-g~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~-~~~v~y~e~~v  704 (836)
                      .+++|+|+++| ++.++.|+++|.++|+..+++|+++|+.++..... +..++..++.++++.+.... +..+... ..+
T Consensus        23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~~~-~~v  100 (155)
T 3dlo_A           23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK-DEDIIEAKETLSWAVSIIRKEGAEGEEH-LLV  100 (155)
T ss_dssp             CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC-HHHHHHHHHHHHHHHHHHHHTTCCEEEE-EEE
T ss_pred             ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc-HHHHHHHHHHHHHHHHHHHhcCCCceEE-EEe
Confidence            46799999999 99999999999999999999999999997543221 22333445566666554422 2234422 224


Q ss_pred             CChHHHHHHHHhcc-cCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          705 NDSNQLVNAFRSLV-SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       705 ~~g~~~~~~i~~~~-~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                      ..|....++++... .++||+|||++++.      ++.+|    -+|.+.+.+...    ++++||||+
T Consensus       101 ~~G~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSv~~~vl~~----a~~PVLvVr  155 (155)
T 3dlo_A          101 RGKEPPDDIVDFADEVDAIAIVIGIRKRS------PTGKL----IFGSVARDVILK----ANKPVICIK  155 (155)
T ss_dssp             SSSCHHHHHHHHHHHTTCSEEEEECCEEC------TTSCE----ECCHHHHHHHHH----CSSCEEEEC
T ss_pred             cCCCHHHHHHHHHHHcCCCEEEECCCCCC------CCCCE----EeccHHHHHHHh----CCCCEEEeC
Confidence            44443334444332 47999999999875      66665    699999999964    889999985

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=98.99  E-value=1.4e-09  Score=103.99  Aligned_cols=128  Identities=12%  Similarity=0.072  Sum_probs=83.9

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCc--------------ccchhhhhhHHHHHHHHHhhcCC
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL--------------VEEEDDKCLDEVVMNDFMASNFG  693 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~--------------~~~~~e~~~d~~~l~~~~~~~~~  693 (836)
                      .++|+|+++|++.++.|+++|.++|+..+++|+++|+.++...              +..+..++..++.++++.++...
T Consensus         6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   85 (150)
T 3tnj_A            6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI   85 (150)
T ss_dssp             CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6799999999999999999999999999999999999875221              01122234455677777766521


Q ss_pred             CCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          694 NPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       694 ~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                       ..+.+.   +..|.....+++.. ..++||+|||++++.      ++. |    -+|.+.+.+...    ++++||||+
T Consensus        86 -~~~~~~---~~~g~~~~~I~~~a~~~~~dliV~G~~~~~------~~~-~----~~Gs~~~~vl~~----~~~pVlvv~  146 (150)
T 3tnj_A           86 -DPAHRW---LVWGEPREEIIRIAEQENVDLIVVGSHGRH------GLA-L----LLGSTANSVLHY----AKCDVLAVR  146 (150)
T ss_dssp             -CGGGEE---EEESCHHHHHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHHH----CSSEEEEEE
T ss_pred             -CcceEE---EecCCHHHHHHHHHHHcCCCEEEEecCCCC------CcC-e----EecchHHHHHHh----CCCCEEEEe
Confidence             212222   22332222333332 257999999999876      655 4    699999999964    789999998


Q ss_pred             ec
Q 003256          773 SV  774 (836)
Q Consensus       773 q~  774 (836)
                      ..
T Consensus       147 ~~  148 (150)
T 3tnj_A          147 LR  148 (150)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=98.99  E-value=1.7e-09  Score=105.98  Aligned_cols=132  Identities=12%  Similarity=-0.052  Sum_probs=88.8

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc----------------c-c--hhhhhhHHHHHHHHH
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV----------------E-E--EDDKCLDEVVMNDFM  688 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~----------------~-~--~~e~~~d~~~l~~~~  688 (836)
                      .++|+++++|+++++.|+++|.++|+..+++|+++|+.++....                . +  +..++..++.++++.
T Consensus         5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (170)
T 2dum_A            5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA   84 (170)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999998753210                0 0  112233445666666


Q ss_pred             hhcCC-CCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcc
Q 003256          689 ASNFG-NPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMV  766 (836)
Q Consensus       689 ~~~~~-~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~  766 (836)
                      +.... +-++.+. ..+..|.....+++.. ..++||||||++++.      ++.++    -+|.+.+.+...    +++
T Consensus        85 ~~~~~~g~~~~~~-~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~------~~~~~----~~Gsv~~~vl~~----~~~  149 (170)
T 2dum_A           85 EEVKRAFRAKNVR-TIIRFGIPWDEIVKVAEEENVSLIILPSRGKL------SLSHE----FLGSTVMRVLRK----TKK  149 (170)
T ss_dssp             HHHHHHTTCSEEE-EEEEEECHHHHHHHHHHHTTCSEEEEESCCCC------C--TT----CCCHHHHHHHHH----CSS
T ss_pred             HHHHHcCCceeee-eEEecCChHHHHHHHHHHcCCCEEEECCCCCC------ccccc----eechHHHHHHHh----CCC
Confidence            54321 2234431 1122333222333322 257999999999876      66665    699999999964    789


Q ss_pred             eEEEEeec
Q 003256          767 SVLVIQSV  774 (836)
Q Consensus       767 SvLvvqq~  774 (836)
                      +||||+..
T Consensus       150 PVlvv~~~  157 (170)
T 2dum_A          150 PVLIIKEV  157 (170)
T ss_dssp             CEEEECCC
T ss_pred             CEEEEccC
Confidence            99999865

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=98.97  E-value=2.2e-09  Score=101.62  Aligned_cols=126  Identities=11%  Similarity=0.065  Sum_probs=84.0

Q ss_pred             cEEEEEccCCcc--hHHHHHHHHHhhcCCCeEEEEEEEeecCCcc---------c---chhhhhhHHHHHHHHHhhcCCC
Q 003256          629 YNVAVFFIGGPD--DREAMALVSHMSSNPGVRITLSRIYLEENLV---------E---EEDDKCLDEVVMNDFMASNFGN  694 (836)
Q Consensus       629 ~~I~v~f~Gg~d--dreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~---------~---~~~e~~~d~~~l~~~~~~~~~~  694 (836)
                      ++|+++++|+++  ++.|+++|.++|+..+++++++|+.++....         .   .+...+...+.++++..+....
T Consensus         2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (143)
T 3fdx_A            2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP   81 (143)
T ss_dssp             CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence            589999999999  9999999999999999999999998753210         0   0111222234455555443211


Q ss_pred             -CCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          695 -PNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       695 -~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                       .++.+.   +..|....++++.. ..++||+|||+++ .      |+.+|    -+|...+.+...    ++++||||+
T Consensus        82 ~~~v~~~---~~~g~~~~~I~~~a~~~~~dliV~G~~~-~------~~~~~----~~Gs~~~~v~~~----~~~pVlvv~  143 (143)
T 3fdx_A           82 EDRMHFH---VAEGSPKDKILALAKSLPADLVIIASHR-P------DITTY----LLGSNAAAVVRH----AECSVLVVR  143 (143)
T ss_dssp             GGGEEEE---EEESCHHHHHHHHHHHTTCSEEEEESSC-T------TCCSC----SSCHHHHHHHHH----CSSEEEEEC
T ss_pred             CCceEEE---EEecChHHHHHHHHHHhCCCEEEEeCCC-C------CCeee----eeccHHHHHHHh----CCCCEEEeC
Confidence             234433   22332222333322 2579999999994 4      76665    699999999964    889999984

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=98.97  E-value=2.5e-09  Score=101.13  Aligned_cols=133  Identities=8%  Similarity=0.038  Sum_probs=85.3

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeec-cCCCccchhcccccccccccCchHHHHHHHHHHhhcCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVEL-VGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSN  541 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel-~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~  541 (836)
                      -|||+|++.+++...+++.+..++..  .+..++++|+++. +...... ......+.  .....++..+.++++.+.. 
T Consensus         3 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~-   76 (141)
T 1jmv_A            3 KHILVAVDLSEESPILLKKAVGIAKR--HDAKLSIIHVDVNFSDLYTGL-IDVNMSSM--QDRISTETQKALLDLAESV-   76 (141)
T ss_dssp             SEEEEEECCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEECCGGGCCCC-EEHHHHHH--TTCCCCHHHHHHHHHHHHS-
T ss_pred             ceEEEEecCchhhHHHHHHHHHHHHh--cCCEEEEEEEecCchhhhccc-cccchHHH--HHHHHHHHHHHHHHHHHHc-
Confidence            37999999999999999988877743  2568999999842 2111010 00000000  0111223334444443322 


Q ss_pred             CceeE-EEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEE
Q 003256          542 DAVTI-QPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFV  611 (836)
Q Consensus       542 ~~v~v-~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlv  611 (836)
                       ++.+ +....   .++..+.|++.|++.++||||||.| +++.   .+  +||+.++|++++||||.|+-
T Consensus        77 -~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~-~~~~---~~--lgs~~~~vl~~~~~pVlvv~  137 (141)
T 1jmv_A           77 -DYPISEKLSG---SGDLGQVLSDAIEQYDVDLLVTGHH-QDFW---SK--LMSSTRQVMNTIKIDMLVVP  137 (141)
T ss_dssp             -SSCCCCEEEE---EECHHHHHHHHHHHTTCCEEEEEEC-CCCH---HH--HHHHHHHHHTTCCSEEEEEE
T ss_pred             -CCCceEEEEe---cCCHHHHHHHHHHhcCCCEEEEeCC-Cchh---hh--hcchHHHHHhcCCCCEEEee
Confidence             2333 22232   2578999999999999999999999 7432   22  58999999999999997643

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=98.93  E-value=1.8e-09  Score=105.50  Aligned_cols=130  Identities=13%  Similarity=0.119  Sum_probs=88.0

Q ss_pred             cccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEE--EEeecCCc-c-----c---chhhhhhHHHHHHHHHhhcCCC-
Q 003256          627 FCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLS--RIYLEENL-V-----E---EEDDKCLDEVVMNDFMASNFGN-  694 (836)
Q Consensus       627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvv--rv~~~~~~-~-----~---~~~e~~~d~~~l~~~~~~~~~~-  694 (836)
                      ..++|+|+++|++.++.|+++|.++|+ .+++++++  ++.++... .     .   .+..++..++.++++.+..... 
T Consensus        16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g   94 (163)
T 1tq8_A           16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAG   94 (163)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTT
T ss_pred             cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            467999999999999999999999999 99999999  88764221 0     0   0112334556777766554222 


Q ss_pred             CC-EEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          695 PN-VVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       695 ~~-v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                      -. +.+.   +..|....++++.. ..++||||||++++.      ++.+|    -+|.+.+.++..    ++++||||+
T Consensus        95 v~~v~~~---v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~~----a~~PVlvV~  157 (163)
T 1tq8_A           95 AKNVEER---PIVGAPVDALVNLADEEKADLLVVGNVGLS------TIAGR----LLGSVPANVSRR----AKVDVLIVH  157 (163)
T ss_dssp             CCEEEEE---EECSSHHHHHHHHHHHTTCSEEEEECCCCC------SHHHH----HTBBHHHHHHHH----TTCEEEEEC
T ss_pred             CCeEEEE---EecCCHHHHHHHHHHhcCCCEEEECCCCCC------cccce----eeccHHHHHHHh----CCCCEEEEe
Confidence            23 4433   33343333333333 367999999999876      65554    699999999974    789999998


Q ss_pred             ec
Q 003256          773 SV  774 (836)
Q Consensus       773 q~  774 (836)
                      ..
T Consensus       158 ~~  159 (163)
T 1tq8_A          158 TT  159 (163)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=98.93  E-value=1.9e-09  Score=104.05  Aligned_cols=129  Identities=14%  Similarity=0.163  Sum_probs=88.8

Q ss_pred             cccEEEEEcc--CCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc------c--chhhhhhHHHHHHHHHhhcCC-CC
Q 003256          627 FCYNVAVFFI--GGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV------E--EEDDKCLDEVVMNDFMASNFG-NP  695 (836)
Q Consensus       627 ~~~~I~v~f~--Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~------~--~~~e~~~d~~~l~~~~~~~~~-~~  695 (836)
                      ..++|+++++  |+++++.|+++|.++|+..+++++++|+.++....      .  .+..++..++.++++.+.... +-
T Consensus        14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~   93 (156)
T 3fg9_A           14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGV   93 (156)
T ss_dssp             CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4689999999  99999999999999999999999999999763211      0  112233445666666554322 11


Q ss_pred             -CEEEEEEEcCChHHHHHHHHh-c-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256          696 -NVVCRRIDANDSNQLVNAFRS-L-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ  772 (836)
Q Consensus       696 -~v~y~e~~v~~g~~~~~~i~~-~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq  772 (836)
                       .+.+...  .+|....++++. . ..++||||||++++.      ++. +    -+|.+.+.+...    ++++||||+
T Consensus        94 ~~~~~~v~--~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~------~~~-~----~~Gs~~~~vl~~----a~~PVlvV~  156 (156)
T 3fg9_A           94 NQVEPLVY--EGGDVDDVILEQVIPEFKPDLLVTGADTEF------PHS-K----IAGAIGPRLARK----APISVIVVR  156 (156)
T ss_dssp             SSEEEEEE--ECSCHHHHHHHTHHHHHCCSEEEEETTCCC------TTS-S----SCSCHHHHHHHH----CSSEEEEEC
T ss_pred             CceEEEEE--eCCCHHHHHHHHHHHhcCCCEEEECCCCCC------ccc-e----eecchHHHHHHh----CCCCEEEeC
Confidence             3443322  214333344443 2 377999999999876      553 2    599999999964    889999985

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=98.76  E-value=3.3e-08  Score=97.19  Aligned_cols=132  Identities=12%  Similarity=0.098  Sum_probs=80.5

Q ss_pred             cccEEEEEccCCc---------chHHHHHHHHHhh-cC--CCeEEEEEEEeecCCc---------c-cch------hhhh
Q 003256          627 FCYNVAVFFIGGP---------DDREAMALVSHMS-SN--PGVRITLSRIYLEENL---------V-EEE------DDKC  678 (836)
Q Consensus       627 ~~~~I~v~f~Gg~---------ddreAL~~A~rmA-~~--~~~~Ltvvrv~~~~~~---------~-~~~------~e~~  678 (836)
                      ..++|+|+++|++         .++.|+++|.+++ +.  .+++|+++|+.++...         . .++      ..++
T Consensus         4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (175)
T 2gm3_A            4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA   83 (175)
T ss_dssp             -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred             CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence            3679999999999         8999999999986 54  6999999999853211         0 000      1112


Q ss_pred             hHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcc-cCCcEEEEcccCCCCccccccCCCCCCCCccccccchhh
Q 003256          679 LDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLV-SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLA  757 (836)
Q Consensus       679 ~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~-~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~la  757 (836)
                      ..++.++++...... ..+.+.. .+..|.....+++... .++||||||++++.      ++.+|    -+|.+.+.+.
T Consensus        84 ~~~~~l~~~~~~~~~-~g~~~~~-~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~------~~~~~----~~Gsva~~vl  151 (175)
T 2gm3_A           84 KGLHLLEFFVNKCHE-IGVGCEA-WIKTGDPKDVICQEVKRVRPDFLVVGSRGLG------RFQKV----FVGTVSAFCV  151 (175)
T ss_dssp             HHHHHHHHHHHHHHH-HTCEEEE-EEEESCHHHHHHHHHHHHCCSEEEEEECCCC------------------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CCCceEE-EEecCCHHHHHHHHHHHhCCCEEEEeCCCCC------hhhhh----hcCchHHHHH
Confidence            234566666554321 1223222 2333433333333332 57999999999876      77665    6999999999


Q ss_pred             ccCCCCCcceEEEEeec
Q 003256          758 SADFAEGMVSVLVIQSV  774 (836)
Q Consensus       758 s~d~~~~~~SvLvvqq~  774 (836)
                      ..    ++++||||+..
T Consensus       152 ~~----a~~pVlvv~~~  164 (175)
T 2gm3_A          152 KH----AECPVMTIKRN  164 (175)
T ss_dssp             HH----CSSCEEEEECC
T ss_pred             hC----CCCCEEEEcCC
Confidence            74    78999999865

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=98.74  E-value=2.4e-08  Score=94.31  Aligned_cols=126  Identities=8%  Similarity=0.024  Sum_probs=83.8

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeec-CC-ccc---------chhhhhhHHHHHHHHHhhcCCCCC
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLE-EN-LVE---------EEDDKCLDEVVMNDFMASNFGNPN  696 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~-~~-~~~---------~~~e~~~d~~~l~~~~~~~~~~~~  696 (836)
                      .++|+++++|+++++.|+++|.++|+..+++++++|+.++ .. ...         .+..++..++.++++.++. + ..
T Consensus         2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~   79 (141)
T 1jmv_A            2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESV-D-YP   79 (141)
T ss_dssp             CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHS-S-SC
T ss_pred             CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHc-C-CC
Confidence            4699999999999999999999999999999999999843 11 100         0111233456777776654 2 12


Q ss_pred             EEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeec
Q 003256          697 VVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSV  774 (836)
Q Consensus       697 v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~  774 (836)
                      +.  +..+..|.....+++.. ..++||+|||++ +.      ++.      .+|...+.+..    .++++||||+..
T Consensus        80 ~~--~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~------~~~------~lgs~~~~vl~----~~~~pVlvv~~~  139 (141)
T 1jmv_A           80 IS--EKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QD------FWS------KLMSSTRQVMN----TIKIDMLVVPLR  139 (141)
T ss_dssp             CC--CEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CC------CHH------HHHHHHHHHHT----TCCSEEEEEECC
T ss_pred             ce--EEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cc------hhh------hhcchHHHHHh----cCCCCEEEeeCC
Confidence            21  11122333222333332 267999999999 64      332      26999999995    588999999864

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=98.72  E-value=3e-08  Score=107.14  Aligned_cols=146  Identities=7%  Similarity=-0.020  Sum_probs=91.2

Q ss_pred             cceeEEeecCCCC-------hHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHH
Q 003256          462 ELRILCGIHDEDH-------ISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVI  534 (836)
Q Consensus       462 elriLvcv~~~~~-------~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~  534 (836)
                      .-|||+|++.++.       ...+++.+..++........++++|+++........-......+.. .....++..+.++
T Consensus       156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~  234 (319)
T 3olq_A          156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLY-NNALRGQHLIAMK  234 (319)
T ss_dssp             TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHH-HHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHH-HHHHHHHHHHHHH
Confidence            4689999999885       3666666665553321145889999988653321100000000000 1111233444555


Q ss_pred             HHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCC
Q 003256          535 KYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKR  614 (836)
Q Consensus       535 ~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg  614 (836)
                      .+.+..... .++.....   ++..+.|++.|++.++||||||.|++++.   .+..+|++.++|++++||||.|+..++
T Consensus       235 ~~~~~~~~~-~~~~~v~~---g~~~~~I~~~a~~~~~dLiV~G~~g~~~~---~~~~~Gsv~~~vl~~~~~pVLvv~~~~  307 (319)
T 3olq_A          235 ELRQKFSIP-EEKTHVKE---GLPEQVIPQVCEELNAGIVVLGILGRTGL---SAAFLGNTAEQLIDHIKCDLLAIKPDG  307 (319)
T ss_dssp             HHHHHTTCC-GGGEEEEE---SCHHHHHHHHHHHTTEEEEEEECCSCCST---HHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred             HHHHHhCCC-cccEEEec---CCcHHHHHHHHHHhCCCEEEEeccCccCC---ccccccHHHHHHHhhCCCCEEEECCCC
Confidence            554433221 22333332   57899999999999999999999988665   444899999999999999997765555


Q ss_pred             C
Q 003256          615 L  615 (836)
Q Consensus       615 ~  615 (836)
                      .
T Consensus       308 ~  308 (319)
T 3olq_A          308 F  308 (319)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=98.71  E-value=4.5e-08  Score=92.10  Aligned_cols=128  Identities=9%  Similarity=0.003  Sum_probs=80.9

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEe-ec-cCCC-ccc-hhcccccccccccCchHHHHHHHHHHhh
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLV-EL-VGRA-APV-VETYSTQKTKAMANSTDHIMRAVIKYAE  538 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlv-el-~~r~-~p~-~~~~~~~~~~~~~~~~~~i~~af~~~~~  538 (836)
                      -|||+|++.++.....++.+..++..  .+..++++|++ +. +... ... -...............++.++.++.++.
T Consensus         5 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   82 (138)
T 1q77_A            5 KVLLVLTDAYSDCEKAITYAVNFSEK--LGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLT   82 (138)
T ss_dssp             EEEEEEESTTCCCHHHHHHHHHHHTT--TCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEccCCHhHHHHHHHHHHHHHH--cCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence            48999999999999999998888754  35799999998 63 1000 000 0000000000001112233333322201


Q ss_pred             cCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          539 GSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       539 ~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                       ...+ .++..+.   .++..+.|++.|++.++||||||.|++            |+.++|++++||||.|
T Consensus        83 -~~~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~g~------------sv~~~vl~~a~~PVlv  136 (138)
T 1q77_A           83 -GSTE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPS------------AYLCKVIDGLNLASLI  136 (138)
T ss_dssp             -SCCC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCG------------GGTHHHHHHSSSEEEE
T ss_pred             -ccCC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCCCC------------chHHHHHHhCCCceEe
Confidence             1223 4554443   368999999999999999999999843            7899999999999865

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=98.71  E-value=2.4e-08  Score=106.71  Aligned_cols=135  Identities=11%  Similarity=0.002  Sum_probs=86.6

Q ss_pred             cceeEEeecCCCC-------hHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHH
Q 003256          462 ELRILCGIHDEDH-------ISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVI  534 (836)
Q Consensus       462 elriLvcv~~~~~-------~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~  534 (836)
                      .-|||+|++.+++       ...+++.+..++...  +..++++|+++.......  .+.. . .  .....++..+.++
T Consensus       134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~--~~~~-~-~--~~~~~~~~~~~l~  205 (290)
T 3mt0_A          134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA--KATLHVISAHPSPMLSSA--DPTF-Q-L--SETIEARYREACR  205 (290)
T ss_dssp             TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEC-----------CH-H-H--HHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc--CCeEEEEEEecCcccccc--Cchh-H-H--HHHHHHHHHHHHH
Confidence            4599999999998       778888877776433  568999999885432111  0100 0 0  0011122233333


Q ss_pred             HHhhcCCCcee-EEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEc
Q 003256          535 KYAEGSNDAVT-IQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVD  612 (836)
Q Consensus       535 ~~~~~~~~~v~-v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvd  612 (836)
                      .+.+..  ++. ++.....   ++..+.|++.|++.++||||||.|++++.   .+..+||+.++|++++||||.|+.+
T Consensus       206 ~~~~~~--g~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiVmG~~g~~~~---~~~~~Gsv~~~vl~~~~~pVLvv~~  276 (290)
T 3mt0_A          206 TFQAEY--GFSDEQLHIEE---GPADVLIPRTAQKLDAVVTVIGTVARTGL---SGALIGNTAEVVLDTLESDVLVLKP  276 (290)
T ss_dssp             HHHHHH--TCCTTTEEEEE---SCHHHHHHHHHHHHTCSEEEEECCSSCCG---GGCCSCHHHHHHHTTCSSEEEEECC
T ss_pred             HHHHHc--CCCcceEEEec---cCHHHHHHHHHHhcCCCEEEECCCCCcCC---cceecchHHHHHHhcCCCCEEEECC
Confidence            343322  221 2222322   58999999999999999999999988665   3348999999999999999976533

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=98.67  E-value=8.7e-08  Score=90.10  Aligned_cols=119  Identities=11%  Similarity=-0.015  Sum_probs=78.3

Q ss_pred             cccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEe-ec---CC------cc-cc---hhhhhhHHHHHHHHHhh--
Q 003256          627 FCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIY-LE---EN------LV-EE---EDDKCLDEVVMNDFMAS--  690 (836)
Q Consensus       627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~-~~---~~------~~-~~---~~e~~~d~~~l~~~~~~--  690 (836)
                      ..++|+++++|+++++.|+++|.++|+..+++++++|+. +.   ..      .. ++   +..++..++.++++ ..  
T Consensus         3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~   81 (138)
T 1q77_A            3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKL   81 (138)
T ss_dssp             CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHh
Confidence            367999999999999999999999999999999999998 52   10      00 01   11123344666666 44  


Q ss_pred             cCCCCCEEEEEEEcCChHHHHHHHHhcc-cCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEE
Q 003256          691 NFGNPNVVCRRIDANDSNQLVNAFRSLV-SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVL  769 (836)
Q Consensus       691 ~~~~~~v~y~e~~v~~g~~~~~~i~~~~-~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvL  769 (836)
                      ....+.+.+.   +..|.....+++... .++||||||++++                   .+.+.+..    .++++||
T Consensus        82 ~~~~~~~~~~---~~~g~~~~~I~~~a~~~~~dliV~G~~g~-------------------sv~~~vl~----~a~~PVl  135 (138)
T 1q77_A           82 TGSTEIPGVE---YRIGPLSEEVKKFVEGKGYELVVWACYPS-------------------AYLCKVID----GLNLASL  135 (138)
T ss_dssp             HSCCCCCCEE---EECSCHHHHHHHHHTTSCCSEEEECSCCG-------------------GGTHHHHH----HSSSEEE
T ss_pred             hccCCcceEE---EEcCCHHHHHHHHHHhcCCCEEEEeCCCC-------------------chHHHHHH----hCCCceE
Confidence            1111144433   233433334444332 4799999999854                   56677775    4778999


Q ss_pred             EEe
Q 003256          770 VIQ  772 (836)
Q Consensus       770 vvq  772 (836)
                      ||+
T Consensus       136 vv~  138 (138)
T 1q77_A          136 IVK  138 (138)
T ss_dssp             ECC
T ss_pred             eeC
Confidence            974

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=98.60  E-value=5.7e-08  Score=104.73  Aligned_cols=132  Identities=14%  Similarity=0.097  Sum_probs=91.0

Q ss_pred             CcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc------cc---hhhhhhHHHHHHHHHhhcCC---
Q 003256          626 NFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV------EE---EDDKCLDEVVMNDFMASNFG---  693 (836)
Q Consensus       626 ~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~------~~---~~e~~~d~~~l~~~~~~~~~---  693 (836)
                      ...++|+|+.+|++.++.|+++|.++|++.+++|+++|++++....      ..   +..++..++.+++.++....   
T Consensus        17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   96 (309)
T 3cis_A           17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASL   96 (309)
T ss_dssp             -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3468999999999999999999999999999999999998742210      10   11223334555555543311   


Q ss_pred             ---CCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEE
Q 003256          694 ---NPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLV  770 (836)
Q Consensus       694 ---~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLv  770 (836)
                         +..+.+.   +..|... +.|.+..+++||||||++++.      ++.+|    -+|...+.++..    ++++|||
T Consensus        97 ~~~~~~~~~~---~~~g~~~-~~I~~~a~~~DliV~G~~g~~------~~~~~----~~Gs~~~~vl~~----~~~PVlv  158 (309)
T 3cis_A           97 RAGPPTVHSE---IVPAAAV-PTLVDMSKDAVLMVVGCLGSG------RWPGR----LLGSVSSGLLRH----AHCPVVI  158 (309)
T ss_dssp             SSCCSCEEEE---EESSCHH-HHHHHHGGGEEEEEEESSCTT------CCTTC----CSCHHHHHHHHH----CSSCEEE
T ss_pred             cCCCceEEEE---EecCCHH-HHHHHHhcCCCEEEECCCCCc------ccccc----ccCcHHHHHHHh----CCCCEEE
Confidence               2234432   3334333 344444458999999999875      66555    699999999964    7899999


Q ss_pred             Eeecc
Q 003256          771 IQSVR  775 (836)
Q Consensus       771 vqq~~  775 (836)
                      |+...
T Consensus       159 v~~~~  163 (309)
T 3cis_A          159 IHDED  163 (309)
T ss_dssp             ECTTC
T ss_pred             EcCCc
Confidence            98764

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=98.52  E-value=8.5e-08  Score=100.96  Aligned_cols=130  Identities=18%  Similarity=0.149  Sum_probs=88.3

Q ss_pred             cEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc------------c--------chhhhhhHHHHHHHHH
Q 003256          629 YNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV------------E--------EEDDKCLDEVVMNDFM  688 (836)
Q Consensus       629 ~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~------------~--------~~~e~~~d~~~l~~~~  688 (836)
                      ++|+++++|++.++.|+++|.++|++.+++++++|+.++....            +        .+..++..++.++++.
T Consensus         1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (268)
T 3ab8_A            1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR   80 (268)
T ss_dssp             CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999998742110            0        0111233345666666


Q ss_pred             hhcCC-CCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcce
Q 003256          689 ASNFG-NPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVS  767 (836)
Q Consensus       689 ~~~~~-~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~S  767 (836)
                      ..... +-.+.+.   +..|.....+++. ..++||+|||++++..     ++.+|    -+|...+.++..    ++++
T Consensus        81 ~~~~~~g~~~~~~---~~~g~~~~~I~~~-~~~~dliV~G~~g~~~-----~~~~~----~~Gs~~~~v~~~----a~~P  143 (268)
T 3ab8_A           81 QSALAAGVAVEAV---LEEGVPHEAILRR-ARAADLLVLGRSGEAH-----GDGFG----GLGSTADRVLRA----SPVP  143 (268)
T ss_dssp             HHHHHTTCCEEEE---EEEECHHHHHHHH-HTTCSEEEEESSCTTS-----CTTCC----SCCHHHHHHHHH----CSSC
T ss_pred             HHHHhCCCCeEEE---EecCCHHHHHHhh-ccCCCEEEEeccCCCc-----ccccc----ccchhHHHHHHh----CCCC
Confidence            54322 2234433   2234333344444 7889999999987520     34443    589999999964    8899


Q ss_pred             EEEEeecc
Q 003256          768 VLVIQSVR  775 (836)
Q Consensus       768 vLvvqq~~  775 (836)
                      ||||+...
T Consensus       144 Vlvv~~~~  151 (268)
T 3ab8_A          144 VLLAPGEP  151 (268)
T ss_dssp             EEEECSSC
T ss_pred             EEEECCCC
Confidence            99998653

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=98.46  E-value=6e-08  Score=103.73  Aligned_cols=133  Identities=9%  Similarity=0.034  Sum_probs=92.6

Q ss_pred             cccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc-------cc---hhhhhhHHHHHHHHHhhcCCCCC
Q 003256          627 FCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV-------EE---EDDKCLDEVVMNDFMASNFGNPN  696 (836)
Q Consensus       627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~-------~~---~~e~~~d~~~l~~~~~~~~~~~~  696 (836)
                      ..++|+|+++|++.++.|+++|.++|++.+++|+++|+.++....       .+   +..++..++.++++.+.... ..
T Consensus        21 m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~g   99 (294)
T 3loq_A           21 QSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEA-AG   99 (294)
T ss_dssp             TTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             hhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence            367999999999999999999999999999999999998753210       11   12233445677777665432 23


Q ss_pred             EEEEEEEcC-ChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeecc
Q 003256          697 VVCRRIDAN-DSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVR  775 (836)
Q Consensus       697 v~y~e~~v~-~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~~  775 (836)
                      +.+....+. .|.. .+.|...+.++||+|||++++.      ++.+|    -+|...+.++..    ++++||||....
T Consensus       100 ~~~~~~~v~~~g~~-~~~I~a~~~~~DliV~G~~g~~------~~~~~----~~Gs~~~~vl~~----~~~PVlvv~~~~  164 (294)
T 3loq_A          100 IKAEVIKPFPAGDP-VVEIIKASENYSFIAMGSRGAS------KFKKI----LLGSVSEGVLHD----SKVPVYIFKHDM  164 (294)
T ss_dssp             CEEEECSSCCEECH-HHHHHHHHTTSSEEEEECCCCC------HHHHH----HHCCHHHHHHHH----CSSCEEEECCCT
T ss_pred             CCcceeEeeccCCh-hHheeeccCCCCEEEEcCCCCc------cccce----eeccHHHHHHhc----CCCCEEEecCcc
Confidence            443320233 3322 3333333578999999999875      54443    589999999964    789999998874

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=97.50  E-value=0.065  Score=57.89  Aligned_cols=101  Identities=10%  Similarity=0.003  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHhhhccCcchhhhccch---hhHHHHHHHHHHHHHHHHHHHHhhccccccchHH-HHHHHhhccccHHHH
Q 003256          115 STIGGIYFVFINTVKMDKGMIPRTIKK---TYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQG-ISISFVASKCAYPVL  190 (836)
Q Consensus       115 ~~iGl~~llF~~Gle~d~~~l~~~~~~---~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~s-l~lg~~ls~Ts~~vv  190 (836)
                      ....+.+.||..|++++.+++++..++   ........+++-=+++++++..+.....  .... ++++++=+.++..+ 
T Consensus        45 i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~--~~~Glil~~~~P~~~~s~v-  121 (332)
T 3zux_A           45 IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAE--IAVGVILVGCCPGGTASNV-  121 (332)
T ss_dssp             HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHSCCCTHHHH-
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChH--HHHHHHHHhcCCchhHHHH-
Confidence            446788999999999999999864443   3332333443322345555555422111  0112 22333223333333 


Q ss_pred             HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 003256          191 VDAISELKLLNSELGQLAISSALLHEIVGLLRLL  224 (836)
Q Consensus       191 ~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~  224 (836)
                         +..+  .+.+ ..++++...++.+++.+.+-
T Consensus       122 ---~t~~--a~Gd-~~la~~~~~~stll~~~~~P  149 (332)
T 3zux_A          122 ---MTYL--ARGN-VALSVAVTSVSTLTSPLLTP  149 (332)
T ss_dssp             ---HHHH--TTCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHH--hCCC-HHHHHHHHHHHHHHHHHHHH
Confidence               3332  2233 25677778888888887766

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}

Probab=96.31  E-value=0.14  Score=53.20  Aligned_cols=246  Identities=8%  Similarity=0.018  Sum_probs=151.2

Q ss_pred             CccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhc
Q 003256          460 DSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEG  539 (836)
Q Consensus       460 ~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~  539 (836)
                      +-.-++||+...|..-.++++++..+...+.   .+.+.++.. .++. ..              ..++ ++.++.|-+.
T Consensus        18 nWrP~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~p-~~~~-~~--------------l~~q-l~~l~~~l~~   77 (294)
T 3g40_A           18 TWKANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLAG-NTDK-EN--------------LLSQ-LPSISEGFQE   77 (294)
T ss_dssp             -CCCEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC----CT-TC--------------HHHH-HHHHHHHHHH
T ss_pred             CCCCcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEcc-CCCc-cH--------------HHHH-HHHHHHHHHh
Confidence            3466899999999999999999999986653   566666631 1111 00              0122 2445555433


Q ss_pred             CCCceeEEEEEEEcCCcchHHHHHHHHHhc-----CCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCC
Q 003256          540 SNDAVTIQPFIMISQYETMHESICKLVKDN-----CITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKR  614 (836)
Q Consensus       540 ~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~-----~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg  614 (836)
                      .  ++  ..++.+-...+..+++....+..     +++.|+||+..+   .+ +...+..++.+.. ++--.|.||.+..
T Consensus        78 r--~v--~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~---~e-~~~~y~~~i~~~~-~~~~nVlil~~~~  148 (294)
T 3g40_A           78 E--GV--FSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPEN---RD-RDEEIREIIRKAS-MYRMGVLLFSKHP  148 (294)
T ss_dssp             T--TC--EEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSS---GG-GHHHHHHHHHHHH-HTTCEEEEEECCT
T ss_pred             C--Cc--eeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCC---hh-hhHHHHHHHHHHH-HhCceEEEEecCC
Confidence            2  23  44445544567889998888876     679999999754   12 3346778877755 4577787775432


Q ss_pred             CCCCCCCCCCCCcccEEEEEcc--------CC--cchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHH
Q 003256          615 LNNCSNSAKPANFCYNVAVFFI--------GG--PDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVM  684 (836)
Q Consensus       615 ~~~~~~~~~~~~~~~~I~v~f~--------Gg--~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l  684 (836)
                      .. +.      ...++|=+=..        ||  .+-.-++-+|-.+..+.++++.+..+++.      |.+++..++++
T Consensus       149 ~~-~f------g~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a~~~a~~~l  215 (294)
T 3g40_A          149 QA-GL------GRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQAQAAENFL  215 (294)
T ss_dssp             TT-TT------TTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHHHHHHHHHH
T ss_pred             cc-CC------CCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHHHHHHHHHH
Confidence            21 11      11345544422        22  34567888888888889999999999874      45677788999


Q ss_pred             HHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCC
Q 003256          685 NDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEG  764 (836)
Q Consensus       685 ~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~  764 (836)
                      +++.+..+-... .+ .  |.  .+-.+++++. .+.||+++|-...               |.+-.+-++.=-     +
T Consensus       216 ~~Lv~~~Ri~a~-~~-v--v~--~~F~~il~~s-~~ADL~flGl~~~---------------~df~~~~~~~~~-----~  268 (294)
T 3g40_A          216 QSLAELARIPNV-KM-Q--VL--RENPIKSSKL-PFASLHIFSLDPN---------------PDLDLARHLMEK-----A  268 (294)
T ss_dssp             HHHHHHHTCCSC-EE-E--EE--SSCTTTSSSC-CCCSEEEEECCSS---------------CCHHHHHHHHHH-----H
T ss_pred             HHHHHHhcCCce-EE-E--ec--CchHHHHhhC-cCCCEEEEcCCCC---------------CcHHHHHHHHHh-----c
Confidence            999987643322 22 2  22  3344666764 7799999998654               345555555542     3


Q ss_pred             cceEEEEeec
Q 003256          765 MVSVLVIQSV  774 (836)
Q Consensus       765 ~~SvLvvqq~  774 (836)
                      .+|-|.|...
T Consensus       269 ~ssc~f~~ds  278 (294)
T 3g40_A          269 GSSCIFALDS  278 (294)
T ss_dssp             TSEEEEEECC
T ss_pred             CCeEEEEecC
Confidence            3466666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	836
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.27
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.26
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	99.12
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.11
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.07
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	99.07
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.0
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.85
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	98.83
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.74
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.66
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	98.35
d1efpb_	246	Small, beta subunit of electron transfer flavoprot	82.99

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.27  E-value=1.2e-11  Score=118.07  Aligned_cols=140  Identities=13%  Similarity=0.133  Sum_probs=93.7

Q ss_pred             eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhccc----c-cccc-c-----ccCchHHHHHH
Q 003256          464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYS----T-QKTK-A-----MANSTDHIMRA  532 (836)
Q Consensus       464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~----~-~~~~-~-----~~~~~~~i~~a  532 (836)
                      |||+|++.++....+++.+..++...  +.+++++|+++.............    . .... .     .....++..+.
T Consensus         5 ~ILvavD~s~~s~~al~~a~~la~~~--~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (160)
T d1mjha_           5 KILYPTDFSETAEIALKHVKAFKTLK--AEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   82 (160)
T ss_dssp             EEEEECCSCHHHHHHHHHHHHTCCSS--CCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHHHHHhc--CCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999998887544  569999999987543221110000    0 0000 0     01111222233


Q ss_pred             HHHHhhcC-CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEE
Q 003256          533 VIKYAEGS-NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFV  611 (836)
Q Consensus       533 f~~~~~~~-~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlv  611 (836)
                      ++.+.+.. ..++.++.....   ++..+.||+.|++.++||||||.|++++..   +..+||+.++|++++||||.|+.
T Consensus        83 l~~~~~~~~~~gv~~~~~~~~---G~~~~~I~~~a~~~~~dliV~G~~~~~~~~---~~~~GS~a~~vl~~s~~pVlvV~  156 (160)
T d1mjha_          83 MENIKKELEDVGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLK---EILLGSVTENVIKKSNKPVLVVK  156 (160)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCT---TCSSCHHHHHHHHHCCSCEEEEC
T ss_pred             HHHHHHHHHhcCCeEEEEEEe---ccHHHHHhhhhhccccceEEeccCCCCccc---ccccCcHHHHHHhcCCCCEEEEc
Confidence            33332211 235666666654   589999999999999999999999886653   34789999999999999997643

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=3.7e-12  Score=117.94  Aligned_cols=132  Identities=15%  Similarity=0.114  Sum_probs=90.2

Q ss_pred             eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCCc
Q 003256          464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDA  543 (836)
Q Consensus       464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~  543 (836)
                      |||+|++.+++...+++.+..++...  +.+++++|+++......    .+...+.. .....++..+.++++.+..+. 
T Consensus         3 ~Ilv~~D~s~~s~~a~~~a~~~a~~~--~~~l~ll~V~~~~~~~~----~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-   74 (135)
T d2z3va1           3 TILLAYDGSEHARRAAEVAKAEAEAH--GARLIVVHAYEPVPDYL----GEPFFEEA-LRRRLERAEGVLEEARALTGV-   74 (135)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEECCCCTTC----CTTHHHHH-HHHHHHHHHHHHHHHHHHHCC-
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHc--CCEEEEEEEecCCcccc----ccchhHHH-HHHHHHHHHHHHHHHHHhcCC-
Confidence            79999999999999999988887443  56899999997543221    11110000 112234444555555433211 


Q ss_pred             eeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          544 VTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       544 v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                      ...+... .+  ++..+.||+.|+++++||||||+|++++..   +..+|++.++|++++||||.|
T Consensus        75 ~~~~~~~-~~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~---~~~~Gs~~~~ll~~~~~pVlv  134 (135)
T d2z3va1          75 PKEDALL-LE--GVPAEAILQAARAEKADLIVMGTRGLGALG---SLFLGSQSQRVVAEAPCPVLL  134 (135)
T ss_dssp             CGGGEEE-EE--SCHHHHHHHHHHHTTCSEEEEESSCSSSCB---CSSCBHHHHHHHHHCSSCEEE
T ss_pred             CeEEEEE-Ec--CChHHHHHHHhhhhheeeEEeccCCCCccc---ccccCcHHHHHHHhCCCCEEe
Confidence            1122222 22  578999999999999999999999886553   348999999999999999965

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=9.9e-11  Score=108.64  Aligned_cols=134  Identities=7%  Similarity=0.023  Sum_probs=90.3

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND  542 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~  542 (836)
                      -|||+|++.++....+++.+..++...  +..++++|+++......+-.......+.  .....++..+.++.+.+....
T Consensus         3 k~ILv~vD~s~~s~~al~~A~~~a~~~--~~~v~~lhv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   78 (140)
T d1jmva_           3 KHILVAVDLSEESPILLKKAVGIAKRH--DAKLSIIHVDVNFSDLYTGLIDVNMSSM--QDRISTETQKALLDLAESVDY   78 (140)
T ss_dssp             SEEEEEECCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEECCGGGCCCCEEHHHHHH--TTCCCCHHHHHHHHHHHHSSS
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHHHHc--CCeEEEEEEeeecccccccccccchHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence            389999999999999999988877443  5689999999865332211111110000  112234455555555443322


Q ss_pred             ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                        ........  .++..+.|++.|++.++|+||||.|++.+      ..+|++.+++++++||||.|.
T Consensus        79 --~~~~~~~~--~~~~~~~I~~~a~~~~~dliV~G~~~~~~------~~lgs~~~~li~~~~~pVliV  136 (140)
T d1jmva_          79 --PISEKLSG--SGDLGQVLSDAIEQYDVDLLVTGHHQDFW------SKLMSSTRQVMNTIKIDMLVV  136 (140)
T ss_dssp             --CCCCEEEE--EECHHHHHHHHHHHTTCCEEEEEECCCCH------HHHHHHHHHHHTTCCSEEEEE
T ss_pred             --ceEEEEEE--ecCHHHHHHHhhhhchhhEEEeccCCCCC------CCcccHHHHHHhccCCCEEEE
Confidence              22222222  35899999999999999999999997633      258999999999999999764

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=9.5e-11  Score=108.20  Aligned_cols=126  Identities=14%  Similarity=0.115  Sum_probs=87.1

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc------c--hhhhhhHHHHHHHHHhhcCCCCCEEE
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE------E--EDDKCLDEVVMNDFMASNFGNPNVVC  699 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~------~--~~e~~~d~~~l~~~~~~~~~~~~v~y  699 (836)
                      +++|++|++|++.++.|+++|.++|+..+++++++|+.++.....      +  +...+..++.+++++..... .....
T Consensus         1 yk~Ilv~~D~s~~s~~a~~~a~~~a~~~~~~l~ll~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~   79 (135)
T d2z3va1           1 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGV-PKEDA   79 (135)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECCCCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHCC-CGGGE
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccccccchhHHHHHHHHHHHHHHHHHHHHhcCC-CeEEE
Confidence            369999999999999999999999999999999999997532211      0  11223344566666654321 12211


Q ss_pred             EEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEE
Q 003256          700 RRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVI  771 (836)
Q Consensus       700 ~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvv  771 (836)
                      .   +..|.....+++.. ..++||+|||++++.      ++.+|    -+|...+.+...    ++++||||
T Consensus        80 ~---~~~g~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~ll~~----~~~pVlvV  135 (135)
T d2z3va1          80 L---LLEGVPAEAILQAARAEKADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE----APCPVLLV  135 (135)
T ss_dssp             E---EEESCHHHHHHHHHHHTTCSEEEEESSCSS------SCBCS----SCBHHHHHHHHH----CSSCEEEE
T ss_pred             E---EEcCChHHHHHHHhhhhheeeEEeccCCCC------ccccc----ccCcHHHHHHHh----CCCCEEeC
Confidence            1   22232222333322 367999999999886      77776    699999999964    88999997

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.07  E-value=1.8e-10  Score=109.55  Aligned_cols=131  Identities=13%  Similarity=0.051  Sum_probs=92.4

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc-----------------chhh-------hhhHHHH
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE-----------------EEDD-------KCLDEVV  683 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~-----------------~~~e-------~~~d~~~  683 (836)
                      ++||+|+.+|++.+++|+.+|..+|+..+++|+++|++++.....                 ++.+       .+..++.
T Consensus         3 ~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (160)
T d1mjha_           3 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK   82 (160)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999987522100                 0111       1222355


Q ss_pred             HHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCC
Q 003256          684 MNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFA  762 (836)
Q Consensus       684 l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~  762 (836)
                      ++++..+... ..+.+... +..|.....+++.. ..++||+|||+|++.      ++.+|    .+|...+.++..   
T Consensus        83 l~~~~~~~~~-~gv~~~~~-~~~G~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~GS~a~~vl~~---  147 (160)
T d1mjha_          83 MENIKKELED-VGFKVKDI-IVVGIPHEEIVKIAEDEGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK---  147 (160)
T ss_dssp             HHHHHHHHHH-TTCEEEEE-EEEECHHHHHHHHHHHTTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH---
T ss_pred             HHHHHHHHHh-cCCeEEEE-EEeccHHHHHhhhhhccccceEEeccCCCC------ccccc----ccCcHHHHHHhc---
Confidence            5555554322 23444333 33453333444433 367999999999886      77776    689999999964   


Q ss_pred             CCcceEEEEeec
Q 003256          763 EGMVSVLVIQSV  774 (836)
Q Consensus       763 ~~~~SvLvvqq~  774 (836)
                       ++++||||+.+
T Consensus       148 -s~~pVlvV~~~  158 (160)
T d1mjha_         148 -SNKPVLVVKRK  158 (160)
T ss_dssp             -CCSCEEEECCC
T ss_pred             -CCCCEEEEcCC
Confidence             89999999976

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.07  E-value=3.8e-10  Score=108.76  Aligned_cols=143  Identities=8%  Similarity=0.108  Sum_probs=83.1

Q ss_pred             ceeEEeecCCC---------ChHHHHHHHHH-hCCCCCCCceEEEEEEeeccCCCccchhcccc--ccccc----ccCch
Q 003256          463 LRILCGIHDED---------HISGIIHLIKA-SNPTEMNPICAYVVHLVELVGRAAPVVETYST--QKTKA----MANST  526 (836)
Q Consensus       463 lriLvcv~~~~---------~~~~li~L~~~-~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~--~~~~~----~~~~~  526 (836)
                      -|||||+++++         ....+++.+.. +.....+...++++|+.+......+.......  +....    ...+.
T Consensus         2 ~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (171)
T d2gm3a1           2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG   81 (171)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred             CEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccccccccCHHHHHHHHHHHHHHH
Confidence            48999999876         45667776533 33444456689999988754432221111100  00000    11122


Q ss_pred             HHHHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcc
Q 003256          527 DHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCT  606 (836)
Q Consensus       527 ~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCs  606 (836)
                      +++++.+..-..  ..++.++..+..   ++..+.||+.|++.++|+||||.|++++.   .+..+||+.++|++++|||
T Consensus        82 ~~~l~~~~~~~~--~~~~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~---~~~~lGSv~~~vi~~~~cp  153 (171)
T d2gm3a1          82 LHLLEFFVNKCH--EIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRF---QKVFVGTVSAFCVKHAECP  153 (171)
T ss_dssp             HHHHHHHHHHHH--HHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHH--hcCCceEEEEEe---CChHHHHHHHHhhcCCcEEEeccCCcccc---ccCccCcHHHHHHhCCCCC
Confidence            334433333222  234666666554   68999999999999999999999988543   3448999999999999999


Q ss_pred             eEEEEcCC
Q 003256          607 VGIFVDKR  614 (836)
Q Consensus       607 VgIlvdrg  614 (836)
                      |.| |.++
T Consensus       154 Vlv-V~~~  160 (171)
T d2gm3a1         154 VMT-IKRN  160 (171)
T ss_dssp             EEE-EECC
T ss_pred             EEE-EeCC
Confidence            976 4444

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=7.6e-10  Score=103.37  Aligned_cols=138  Identities=11%  Similarity=0.072  Sum_probs=86.7

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhccccccccc-ccCchHHHHHHHHHHhhcCC
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKA-MANSTDHIMRAVIKYAEGSN  541 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~  541 (836)
                      -|||+|++.++....+++.+..++..  ....+++++.++..... +........+... .....++.++.++...... 
T Consensus         6 k~ILv~vD~s~~s~~al~~A~~la~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-   81 (147)
T d1tq8a_           6 KTVVVGTDGSDSSMRAVDRAAQIAGA--DAKLIIASAYLPQHEDA-RAADILKDESYKVTGTAPIYEILHDAKERAHNA-   81 (147)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHTT--TSEEEEEEECCC---------------------CCTHHHHHHHHHHHHHTT-
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHhc--CCCEEEEEEEecccccc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHc-
Confidence            48999999999999999998887643  23344443433222211 1111111100001 2344556666666654432 


Q ss_pred             CceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256          542 DAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF  610 (836)
Q Consensus       542 ~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl  610 (836)
                      +...++....   .++..+.|++.|++.++||||||.|++++.   .+..+|++.++|++++||||.|+
T Consensus        82 ~~~~~~~~~~---~G~~~~~i~~~a~~~~~dlIv~g~~~~~~~---~~~l~Gs~~~~ll~~~~~pVlvV  144 (147)
T d1tq8a_          82 GAKNVEERPI---VGAPVDALVNLADEEKADLLVVGNVGLSTI---AGRLLGSVPANVSRRAKVDVLIV  144 (147)
T ss_dssp             TCCEEEEEEE---CSSHHHHHHHHHHHTTCSEEEEECCCCCSH---HHHHTBBHHHHHHHHTTCEEEEE
T ss_pred             CCCcEEEEEE---ecChHHHHHHhhhccceeEEEecCCCCCcc---cccccccHHHHHHHhCCCCEEEE
Confidence            2233444444   368999999999999999999999987554   34489999999999999998653

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=2e-09  Score=100.38  Aligned_cols=132  Identities=12%  Similarity=0.031  Sum_probs=86.7

Q ss_pred             cccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCc----------ccchhhhhhHHHHHHHHHhhcCCCCC
Q 003256          627 FCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL----------VEEEDDKCLDEVVMNDFMASNFGNPN  696 (836)
Q Consensus       627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~----------~~~~~e~~~d~~~l~~~~~~~~~~~~  696 (836)
                      .+++|+||.+|+++++.|+++|.++|+..+..+++.++.++...          ...+.+++..++.+++++......+ 
T Consensus         4 ~yk~ILv~vD~s~~s~~al~~A~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-   82 (147)
T d1tq8a_           4 AYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAG-   82 (147)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTT-
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHhcCCCEEEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence            36899999999999999999999999988888877666543111          0012233444556666655432222 


Q ss_pred             EEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEee
Q 003256          697 VVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQS  773 (836)
Q Consensus       697 v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq  773 (836)
                      +...+..+..|....++++.. ..++||||+|++++.      ++.++    -+|...+.++.    .++++||||+.
T Consensus        83 ~~~~~~~~~~G~~~~~i~~~a~~~~~dlIv~g~~~~~------~~~~~----l~Gs~~~~ll~----~~~~pVlvV~~  146 (147)
T d1tq8a_          83 AKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLS------TIAGR----LLGSVPANVSR----RAKVDVLIVHT  146 (147)
T ss_dssp             CCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCC------SHHHH----HTBBHHHHHHH----HTTCEEEEECC
T ss_pred             CCcEEEEEEecChHHHHHHhhhccceeEEEecCCCCC------ccccc----ccccHHHHHHH----hCCCCEEEEec
Confidence            111223344554444444433 377999999999875      55444    79999999996    48899999974

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.83  E-value=3.9e-09  Score=97.55  Aligned_cols=125  Identities=13%  Similarity=0.077  Sum_probs=84.0

Q ss_pred             ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc-----------chhhhhhHHHHHHHHHhhcCCCCC
Q 003256          628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE-----------EEDDKCLDEVVMNDFMASNFGNPN  696 (836)
Q Consensus       628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~-----------~~~e~~~d~~~l~~~~~~~~~~~~  696 (836)
                      ++||+|+.+|++.++.|+++|.++|++.+++++++|+.++.....           .+..++...+.+++...+... ..
T Consensus         2 yk~ILv~vD~s~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   80 (140)
T d1jmva_           2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDY-PI   80 (140)
T ss_dssp             CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSS-CC
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEEEeeecccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC-ce
Confidence            579999999999999999999999999999999999987532100           011122333555555555422 22


Q ss_pred             EEEEEEEcCCh-HHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEee
Q 003256          697 VVCRRIDANDS-NQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQS  773 (836)
Q Consensus       697 v~y~e~~v~~g-~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq  773 (836)
                      ...... ..+. ..+.+..+  ..++||+|||+|++.      |.       .+|...+.++.    .++++||||+.
T Consensus        81 ~~~~~~-~~~~~~~I~~~a~--~~~~dliV~G~~~~~------~~-------~lgs~~~~li~----~~~~pVliVp~  138 (140)
T d1jmva_          81 SEKLSG-SGDLGQVLSDAIE--QYDVDLLVTGHHQDF------WS-------KLMSSTRQVMN----TIKIDMLVVPL  138 (140)
T ss_dssp             CCEEEE-EECHHHHHHHHHH--HTTCCEEEEEECCCC------HH-------HHHHHHHHHHT----TCCSEEEEEEC
T ss_pred             EEEEEE-ecCHHHHHHHhhh--hchhhEEEeccCCCC------CC-------CcccHHHHHHh----ccCCCEEEEec
Confidence            222221 2232 22223333  266899999998764      32       38999999995    58899999975

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.74  E-value=2.1e-08  Score=92.02  Aligned_cols=120  Identities=10%  Similarity=0.013  Sum_probs=76.8

Q ss_pred             cccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCc-----------ccc---hhhhhhHHHHHHHHHhhcC
Q 003256          627 FCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL-----------VEE---EDDKCLDEVVMNDFMASNF  692 (836)
Q Consensus       627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~-----------~~~---~~e~~~d~~~l~~~~~~~~  692 (836)
                      ..++|+++.+|+++++.|+++|.++|+..+++++++|++++...           ...   +..++..++.++++..+..
T Consensus         3 ~mk~ILv~~D~S~~s~~al~~A~~~a~~~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~   82 (138)
T d1q77a_           3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLT   82 (138)
T ss_dssp             CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeCCHHHHHHHHHHHHhhhhccceEEEEEEccCcccccccccccccchhhhhhhhhhhhccccchhhccccc
Confidence            46899999999999999999999999999999999999864111           111   1112333455555555442


Q ss_pred             CC-CCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEE
Q 003256          693 GN-PNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLV  770 (836)
Q Consensus       693 ~~-~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLv  770 (836)
                      .. ..+.+.   +..|.....+++.. ..++||||||+|++.      +            +..+|-     ++++++||
T Consensus        83 ~~~~~~~~~---v~~G~~~~~I~~~a~~~~~DLIV~Gs~g~~------~------------l~r~l~-----g~~~~~li  136 (138)
T d1q77a_          83 GSTEIPGVE---YRIGPLSEEVKKFVEGKGYELVVWACYPSA------Y------------LCKVID-----GLNLASLI  136 (138)
T ss_dssp             SCCCCCCEE---EECSCHHHHHHHHHTTSCCSEEEECSCCGG------G------------THHHHH-----HSSSEEEE
T ss_pred             ccceeEEEe---eecchhHHHHHHhhhhccCCEEEEecCCCc------H------------HHHHhc-----CCCCCEEE
Confidence            22 233333   23343232333332 367999999998753      3            334555     46778888


Q ss_pred             Ee
Q 003256          771 IQ  772 (836)
Q Consensus       771 vq  772 (836)
                      |+
T Consensus       137 vk  138 (138)
T d1q77a_         137 VK  138 (138)
T ss_dssp             CC
T ss_pred             eC
Confidence            74

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.66  E-value=1.4e-08  Score=93.19  Aligned_cols=127  Identities=11%  Similarity=-0.011  Sum_probs=82.3

Q ss_pred             ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccc----cccCch-HHHHHHHHHHh
Q 003256          463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTK----AMANST-DHIMRAVIKYA  537 (836)
Q Consensus       463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~----~~~~~~-~~i~~af~~~~  537 (836)
                      -+||+|+|.+++...+++.+..++...  +.+++++|++|......+...........    ...... +.+.+..+.+.
T Consensus         5 k~ILv~~D~S~~s~~al~~A~~~a~~~--~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~   82 (138)
T d1q77a_           5 KVLLVLTDAYSDCEKAITYAVNFSEKL--GAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLT   82 (138)
T ss_dssp             EEEEEEESTTCCCHHHHHHHHHHHTTT--CCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeCCHHHHHHHHHHHHhhhhc--cceEEEEEEccCcccccccccccccchhhhhhhhhhhhccccchhhccccc
Confidence            489999999999999999999988554  57999999998542221111111110000    001111 22223333332


Q ss_pred             hcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256          538 EGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI  609 (836)
Q Consensus       538 ~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI  609 (836)
                      .   ....++..+..   ++..+.|++.|++.++||||||+|++            +...+++..+.||+.|
T Consensus        83 ~---~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIV~Gs~g~------------~~l~r~l~g~~~~~li  136 (138)
T d1q77a_          83 G---STEIPGVEYRI---GPLSEEVKKFVEGKGYELVVWACYPS------------AYLCKVIDGLNLASLI  136 (138)
T ss_dssp             S---CCCCCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCCG------------GGTHHHHHHSSSEEEE
T ss_pred             c---cceeEEEeeec---chhHHHHHHhhhhccCCEEEEecCCC------------cHHHHHhcCCCCCEEE
Confidence            2   23444444443   68999999999999999999999965            2345788899999854

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=6e-07  Score=85.68  Aligned_cols=129  Identities=10%  Similarity=0.083  Sum_probs=77.1

Q ss_pred             cEEEEEccCCc---------chHHHHHHHHHhhcCC---CeEEEEEEEeecCCc----------cc------chhhhhhH
Q 003256          629 YNVAVFFIGGP---------DDREAMALVSHMSSNP---GVRITLSRIYLEENL----------VE------EEDDKCLD  680 (836)
Q Consensus       629 ~~I~v~f~Gg~---------ddreAL~~A~rmA~~~---~~~Ltvvrv~~~~~~----------~~------~~~e~~~d  680 (836)
                      .||+|..+|+.         ..+.|+++|...+.+.   ...|+++|+.+....          ..      .+..++..
T Consensus         2 ~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (171)
T d2gm3a1           2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG   81 (171)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred             CEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccccccccCHHHHHHHHHHHHHHH
Confidence            58999999874         5799999999888554   447999998764211          00      11123334


Q ss_pred             HHHHHHHHhhcCC-CCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhc
Q 003256          681 EVVMNDFMASNFG-NPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLAS  758 (836)
Q Consensus       681 ~~~l~~~~~~~~~-~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las  758 (836)
                      ++++++++..... +..+.+.   +..|....++++.. ..++||+|||++++.      ++.++    -+|.+.+.+..
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~---v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~------~~~~~----~lGSv~~~vi~  148 (171)
T d2gm3a1          82 LHLLEFFVNKCHEIGVGCEAW---IKTGDPKDVICQEVKRVRPDFLVVGSRGLG------RFQKV----FVGTVSAFCVK  148 (171)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEE---EEESCHHHHHHHHHHHHCCSEEEEEECCCC------------------CHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCceEEE---EEeCChHHHHHHHHhhcCCcEEEeccCCcc------ccccC----ccCcHHHHHHh
Confidence            4666666655422 2233332   22333222333322 367999999999875      56554    69999999996


Q ss_pred             cCCCCCcceEEEEeec
Q 003256          759 ADFAEGMVSVLVIQSV  774 (836)
Q Consensus       759 ~d~~~~~~SvLvvqq~  774 (836)
                          .++|+||||+--
T Consensus       149 ----~~~cpVlvV~~~  160 (171)
T d2gm3a1         149 ----HAECPVMTIKRN  160 (171)
T ss_dssp             ----HCSSCEEEEECC
T ss_pred             ----CCCCCEEEEeCC
Confidence                488999999854

>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Small, beta subunit of electron transfer flavoprotein ETFP
species: Paracoccus denitrificans [TaxId: 266]

Probab=82.99  E-value=2.2  Score=41.15  Aligned_cols=101  Identities=13%  Similarity=0.199  Sum_probs=56.8

Q ss_pred             CcchHHHHHHHHHhhcCCC-eEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEE-----EcCChHHHH
Q 003256          638 GPDDREAMALVSHMSSNPG-VRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRI-----DANDSNQLV  711 (836)
Q Consensus       638 g~ddreAL~~A~rmA~~~~-~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~-----~v~~g~~~~  711 (836)
                      .|.|+-||+.|.|+.+..+ .++|++.+-++..           ++.+++-...  +.++.....-     ...|...+.
T Consensus        36 Np~D~~AlE~Al~lke~~~g~~Vtvls~Gp~~a-----------~~~lr~alAm--GaD~avli~~~~~~~~~~d~~ata  102 (246)
T d1efpb_          36 NPFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQA-----------AETLRTALAM--GADRAILVVAADDVQQDIEPLAVA  102 (246)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCSEEEEEEEESGGG-----------HHHHHHHHHH--TCSEEEEEECCSSTTCCCCHHHHH
T ss_pred             CccCHHHHHHHHHHhhcCCCeEEEEEEecCcch-----------HHHHHHHHhh--cCChheEEeeccccccccCHHHHH
Confidence            8999999999999998755 5999998876521           1233332222  2222221210     011223444


Q ss_pred             HHHHhc--ccCCcEEEEcccCCCC-----ccccccCCCCCCCCccccccc
Q 003256          712 NAFRSL--VSDNDLVIVGRQQPFS-----SRLLEETKPWVEYDELGIIGD  754 (836)
Q Consensus       712 ~~i~~~--~~~~DLiivG~~~~~~-----~~~~~Gl~~w~e~~eLG~igd  754 (836)
                      .++...  ..+||||+.|+..-..     .++++.+.+|   |-+..+-+
T Consensus       103 ~~la~~~~~~~~DLIl~G~~s~D~~tgqvg~~lAe~Lg~---P~vt~v~~  149 (246)
T d1efpb_         103 KILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW---AQATFASK  149 (246)
T ss_dssp             HHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC---EEEEEEEE
T ss_pred             HHHHHHHhhcCCCEEEEEeeeccccccchhHHHHHHhhc---cceeEEEE
Confidence            455544  2459999999986431     2334443344   55555544